Psyllid ID: psy12697

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600--
Protein Sequence
MTYSSDEVNFLVYRYLQESGFQHSAYTFGIESHISQSNIDGALVPPAALLSIIQKGLQYTEAEISVGENGQEQRPTESLSLIDAVLPDFVANRQNQLNSQRTNNPSTGPAITNGEEVHRLTLPLWDVERGECLNTLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKGTGGIFEVCWNSRGTPPNPPESMEVDASIEIPQSKATKLIGHESEVFICAWNPVKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFLATGSYDGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEGHTTGQLVHSYKGTGGIFEVCWNSRGDKVGASASDGSVFKNV
Secondary Structure (PSIPRED)
ccccHHHHHHHHHHHHHHHccHHHHHccccccccccccccccccccHHHHHHHHHccccccEEEccccccccccccccccccccccccEEEEccccccEEEEEEccccccEEEEEcccccEEEEEEccccEEEEEcccccccEEEEEEcccccEEEEEEccccEEEEEcccccEEEEEcccccEEEEEEcccccccccEEEccccccEEcccccccEEEcccccEEEEEEcccccEEEEEEccccEEEEEccccccccccccEEEEEEEEccccccccccccEEEEEEcccccEEEEEEccccEEEEccccccEEccccccccEEEEEEcccccEEEEEEccccEEEEEccccEEEEEcccccccEEEEEEccccEEEEEEccccEEEEEcccccEEEEEccccccEEEEEEcccccEEEEEEccccEEEEEccccEEEEEcccccccEEEEEEccccccEEEcccccEEEEEEccccccccEEEEEEcccccEEEEEEccccEEEEEccccEEEEEcccccccEEEEEEcccccEEEEEccccEEEEEcccccEEEEEEccccccEEccccccccEEEEEEcccccEEEEEEccccEEEcc
Secondary Structure Prediction (SSPRO)
cccccccEEEEEEEEcccccccEEEEEcccccEEEEEEcccEEEEcccEEEEccccccEEEEEEEccccccccccEEEEEcccccEEEEEccccccEEEEEEEEcccccEEEEEccccccEEEEEEcccccEEEEEEcccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEcccccEEEEEEcccccEEEEEEccccccEEEEEccccEEEEcccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEEEEEEccccccEEEEEccccccEEEEEEcccccEEEEEccccEEEEEEccccEEEEEccccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEEcccccEEEEEEccccEEEEEccccEEEEEEcccccEEEEEEcccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEccccccEEEEEEcccccEEEEcccccEEEEEEccccccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEEcccccEEEEEEccccEEEEEccccEEEEEEcccccEEEEEEcccccEEEEEEcccccEEEEEEcccccEEEEEccccEEEEEc
Coil and Loop (DISEMBL)
MTYSSDEVNFLVYRYLQEsgfqhsaytfgieshisqsnidgalvppAALLSIIQKGLQYTEaeisvgengqeqrpteslSLIDAVLPDFVANRqnqlnsqrtnnpstgpaitngeevhrltlplwdvergeclntltrhtepvysvafspdgkflasgsfdkCVHIWSARTGQlvhsykgtggifevcwnsrgtppnppesmevdasieipqskatklighesevficawnpvkdflasgsgdstariwdmtdstkkdpkELQIVLRHCIskggtevpsnkdvtsldwnnngsflatgsydgyariwtsdgslkstlgqhkgpifalkwnkrgnyilsagvdKTTIIWdaasgqceqqfsfhsapaldvdwqsntsfascstdqhihvcklhsdkpvksfeghtnevnaikwdpqglllascsddmtlKIWSLDKDNCVHDLQAhnkeiytikwsptgpetsnpnmSLIFILKStlgqhkgpifalkwnkrgnyilsagvdKTTIIWdaasgqceqqfsfhsapaldvdwqsntsfascstdqhihvcklhsdkpvksfeghttgqlvhsykgtggifevcwnsrgdkvgasasdgsvfknv
Flexible Loop (DISEMBL)
MTYSSDEVNFLVYRYLQESGFQHSAYTFGIESHISQSNIDGALVPPAALLSIIQKGLQYTEAEISVGENGQEQRPTESLSLIDAVLPDFVANRQNqlnsqrtnnpstgpaitngeevHRLTLPLWDVERGECLNTLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKGTGGIFEVCWNSRGTPPNPPESMEVDASIEIPQSKATKLIGHESEVFICAWNPVKDFLASGSGDSTARIWDMtdstkkdpkeLQIVLRHCiskggtevpsnkdvtsldWNNNGSFLATGSYDGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHDLQAHNKeiytikwsptgpetsNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEGHTTGQLVHSYKGTGGIFEVCWNSRGDkvgasasdgsvfknv
Low Complexity Region (SEG)
MTYSSDEVNFLVYRYLQESGFQHSAYTFGIESHISQSNIDGALVPPAALLSIIQKGLQYTEAEISVGENGQEQRPTESLSLIDAVLPDFVANRQNQLNSQRTNNPSTGPAITNGEEVHRLTLPLWDVERGECLNTLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKGTGGIFEVCWNSRGTPPNPPESMEVDASIEIPQSKATKLIGHESEVFICAWNPVKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFLATGSYDGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEGHTTGQLVHSYKGTGGIFEVCWNSRGDKVGASASDGSVFKNV
Disordered region (IsUnstruct)
*******VNFLVYRYLQESGFQHSAYTFGIESHISQSNIDGALVPPAALLSIIQKGLQYTEAEI****************LIDAVLPDFV*************************EVHRLTLPLWDVERGECLNTLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKGTGGIFEVCWN**************************KLIGHESEVFICAWNPVKDFLASGSGDSTARIWD***********LQIVLRHCISKGGTEVP*NKDVTSLDWNNNGSFLATGSYDGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHDLQAHNKEIYTIKWSPT*******NMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEGHTTGQLVHSYKGTGGIFEVCWNS******************
Disordered Region (DISOPRED)
**YSSDEVNFLVYRYLQESGFQHSAYTFGIESHISQSNIDGALVPPAALLSIIQKGLQYTEAEISVGENGQEQRPTESLSLIDAVLPDFVANRQNQLNSQRTNNPSTGPAITNGEEVHRLTLPLWDVERGECLNTLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKGTGGIFEVCWNSRGTPPNPPESMEVDASIEIPQSKATKLIGHESEVFICAWNPVKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFLATGSYDGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEGHTTGQLVHSYKGTGGIFEVCWNSRGDKVGASASDGSVFKNV
Disordered Region (DISEMBL)
MTYSSDEVNFLVYRYLQESGFQHSAYTFGIESHISQSNIDGALVPPAALLSIIQKGLQYTEAEIS***********ESLSLIDAVLPDFVANRQNQLNSQRTNNPSTGPAITNGEEVHRLTLPLWDVERGECLNTLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKGTGGIFEVCWNSRGTPPNPPESMEVDASIEIPQSKATKLIGHESEVFICAWNPVKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFLATGSYDGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEGHTTGQLVHSYKGTGGIFEVCWNSRGDKV*************
Disordered Region (DISPRO)
****SDEVNFLVYRYLQESGFQHSAYTFGIESHISQSNIDGALVPPAALLSIIQKGLQYTEAEISVGENGQEQRPTESLSLIDAVLPDFVANRQNQLNSQRTNNPSTGPAITNGEEVHRLTLPLWDVERGECLNTLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKGTGGIFEVCWNSRGTPPNPPESMEVDASIEIPQSKATKLIGHESEVFICAWNPVKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFLATGSYDGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEGHTTGQLVHSYKGTGGIFEVCWNSRGDKVGASASDGSVFKNV
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MTYSSDEVNFLVYRYLQESGFQHSAYTFGIESHISQSNIDGALVPPAALLSIIQKGLQYTEAEISVGENGQEQRPTESLSLIDAVLPDFVANRQNQLNSQRTNNPSTGPAITNGEEVHRLTLPLWDVERGECLNTLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKGTGGIFEVCWNSRGTPPNPPESMEVDASIEIPQSKATKLIGHESEVFICAWNPVKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFLATGSYDGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEGHTTGQLVHSYKGTGGIFEVCWNSRGDKVGASASDGSVFKNV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	602	2.2.26 [Sep-21-2011]
Q95RJ9	700	F-box-like/WD repeat-cont	yes	N/A	0.594	0.511	0.646	1e-147
O60907	577	F-box-like/WD repeat-cont	yes	N/A	0.602	0.629	0.625	1e-144
Q8BHJ5	514	F-box-like/WD repeat-cont	yes	N/A	0.602	0.706	0.627	1e-143
Q4R8H1	569	F-box-like/WD repeat-cont	N/A	N/A	0.602	0.637	0.620	1e-143
Q9QXE7	527	F-box-like/WD repeat-cont	no	N/A	0.602	0.688	0.627	1e-143
Q9BZK7	514	F-box-like/WD repeat-cont	no	N/A	0.602	0.706	0.625	1e-142
Q9BQ87	522	F-box-like/WD repeat-cont	no	N/A	0.602	0.695	0.617	1e-142
Q7SZM9	519	F-box-like/WD repeat-cont	N/A	N/A	0.602	0.699	0.625	1e-141
Q6GPC6	522	F-box-like/WD repeat-cont	N/A	N/A	0.602	0.695	0.625	1e-141
Q8YRI1	1526	Uncharacterized WD repeat	yes	N/A	0.639	0.252	0.283	1e-42

>sp|Q95RJ9|EBI_DROME F-box-like/WD repeat-containing protein ebi OS=Drosophila melanogaster GN=ebi PE=1 SV=2

 Score =  521 bits (1343), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 258/399 (64%), Positives = 296/399 (74%), Gaps = 41/399 (10%)

Query: 202 MEVDASIEIPQSKATKLIGHESEVFICAWNPVKDFLASGSGDSTARIWDMTDSTKKDPKE 261
           M++D +IEIP+SKA  L GHESEVFICAWNP +D LASGSGDSTARIWDM+D+   +   
Sbjct: 335 MDIDENIEIPESKARVLRGHESEVFICAWNPSRDLLASGSGDSTARIWDMSDA---NTNS 391

Query: 262 LQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFLATGSYDGYARIWTSDGSLKSTLGQHK 321
            Q+VLRHCI KGG EVPSNKDVTSLDWN +GS LATGSYDGYARIW +DG L STLGQHK
Sbjct: 392 NQLVLRHCIQKGGAEVPSNKDVTSLDWNCDGSLLATGSYDGYARIWKTDGRLASTLGQHK 451

Query: 322 GPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTSFASCS 381
           GPIFALKWNK GNYILSAGVDKTTIIWDA++GQC QQF+FHSAPALDVDWQ+N +FASCS
Sbjct: 452 GPIFALKWNKCGNYILSAGVDKTTIIWDASTGQCTQQFAFHSAPALDVDWQTNQAFASCS 511

Query: 382 TDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHD 441
           TDQ IHVC+L  ++P+K+F+GHTNEVNAIKW PQG LLASCSDDMTLKIWS+++D C HD
Sbjct: 512 TDQRIHVCRLGVNEPIKTFKGHTNEVNAIKWCPQGQLLASCSDDMTLKIWSMNRDRCCHD 571

Query: 442 LQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVD 501
           LQAH+KEIYTIKWSPTGP T+NPN +LI                         + SA  D
Sbjct: 572 LQAHSKEIYTIKWSPTGPGTNNPNTNLI-------------------------LASASFD 606

Query: 502 KTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTS-FASCSTDQHIHVCKLHSDKPVKSFE 560
            T  +WD   G C    + H+ P   V +  +    AS S D+ +H+             
Sbjct: 607 STVRLWDVERGSCIHTLTKHTEPVYSVAFSPDGKHLASGSFDKCVHIWSTQ--------- 657

Query: 561 GHTTGQLVHSYKGTGGIFEVCWNSRGDKVGASASDGSVF 599
              TGQLVHSYKGTGGIFEVCWNS+G KVGASASDGSVF
Sbjct: 658 ---TGQLVHSYKGTGGIFEVCWNSKGTKVGASASDGSVF 693

F-box-like component of E3 ubiquitin ligase complexes; involved in R7 photoreceptor cell differentiation, cone cell development and neuronal cell cycle control. E3 ubiquitin ligase complexes mediate ubiquitination and subsequent proteasomal degradation of target proteins. Required for specification of R7 photoreceptor cell fate in the eye by participating in the ubiquitination and subsequent proteasomal degradation of Tramtrack (ttk), a general inhibitor of photoreceptor differentiation. Required to block the S phase entry in the peripheral nervous system and central nervous system in a process that does not involve the degradation of ttk. Involved in cone cell development by preventing the transcriptional repression mediated by Su(H) on Dl, probably by participating in a E3 complex that contains sno and mediates the ubiquitination and subsequent proteasomal degradation of some component of the Su(H) repressor complex.
Drosophila melanogaster (taxid: 7227)

>sp|O60907|TBL1X_HUMAN F-box-like/WD repeat-containing protein TBL1X OS=Homo sapiens GN=TBL1X PE=1 SV=3

 Score =  513 bits (1320), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 252/403 (62%), Positives = 297/403 (73%), Gaps = 40/403 (9%)

Query: 197 NPPESMEVDASIEIPQSKATKLIGHESEVFICAWNPVKDFLASGSGDSTARIWDMTDSTK 256
           N  + ME+D  +EIP SKAT L GHESEVFICAWNPV D LASGSGDSTARIW++ +++ 
Sbjct: 207 NHAKPMEIDGEVEIPSSKATVLRGHESEVFICAWNPVSDLLASGSGDSTARIWNLNENS- 265

Query: 257 KDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFLATGSYDGYARIWTSDGSLKST 316
            +    Q+VLRHCI +GG +VPSNKDVTSLDWN NG+ LATGSYDG+ARIWT DG+L ST
Sbjct: 266 -NGGSTQLVLRHCIREGGHDVPSNKDVTSLDWNTNGTLLATGSYDGFARIWTEDGNLAST 324

Query: 317 LGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTS 376
           LGQHKGPIFALKWN++GNYILSAGVDKTTIIWDA +G+ +QQF FHSAPALDVDWQ+NT+
Sbjct: 325 LGQHKGPIFALKWNRKGNYILSAGVDKTTIIWDAHTGEAKQQFPFHSAPALDVDWQNNTT 384

Query: 377 FASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKD 436
           FASCSTD  IHVC+L  D+PVK+F+GHTNEVNAIKWDP G+LLASCSDDMTLKIWS+ ++
Sbjct: 385 FASCSTDMCIHVCRLGCDRPVKTFQGHTNEVNAIKWDPSGMLLASCSDDMTLKIWSMKQE 444

Query: 437 NCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYIL 496
            C+HDLQAHNKEIYTIKWSPTGP TSNPN +++                         + 
Sbjct: 445 VCIHDLQAHNKEIYTIKWSPTGPATSNPNSNIM-------------------------LA 479

Query: 497 SAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTSF-ASCSTDQHIHVCKLHSDKP 555
           SA  D T  +WD   G C    + H  P   V +  +  + AS S D+ +H+    S   
Sbjct: 480 SASFDSTVRLWDIERGVCTHTLTKHQEPVYSVAFSPDGKYLASGSFDKCVHIWNTQS--- 536

Query: 556 VKSFEGHTTGQLVHSYKGTGGIFEVCWNSRGDKVGASASDGSV 598
                    G LVHSY+GTGGIFEVCWN+RGDKVGASASDGSV
Sbjct: 537 ---------GNLVHSYRGTGGIFEVCWNARGDKVGASASDGSV 570

F-box-like protein involved in the recruitment of the ubiquitin/19S proteasome complex to nuclear receptor-regulated transcription units. Plays an essential role in transcription activation mediated by nuclear receptors. Probably acts as integral component of corepressor complexes that mediates the recruitment of the 19S proteasome complex, leading to the subsequent proteasomal degradation of transcription repressor complexes, thereby allowing cofactor exchange.

Homo sapiens (taxid: 9606)

>sp|Q8BHJ5|TBL1R_MOUSE F-box-like/WD repeat-containing protein TBL1XR1 OS=Mus musculus GN=Tbl1xr1 PE=2 SV=1

 Score =  509 bits (1312), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 253/403 (62%), Positives = 295/403 (73%), Gaps = 40/403 (9%)

Query: 197 NPPESMEVDASIEIPQSKATKLIGHESEVFICAWNPVKDFLASGSGDSTARIWDMTDSTK 256
           N  + MEVD  +EIP +KA  L GHESEVFICAWNPV D LASGSGDSTARIW++++++ 
Sbjct: 144 NHTDMMEVDGDVEIPSNKAVVLRGHESEVFICAWNPVSDLLASGSGDSTARIWNLSENST 203

Query: 257 KDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFLATGSYDGYARIWTSDGSLKST 316
             P   Q+VLRHCI +GG +VPSNKDVTSLDWN+ G+ LATGSYDG+ARIWT DG+L ST
Sbjct: 204 SGPT--QLVLRHCIREGGQDVPSNKDVTSLDWNSEGTLLATGSYDGFARIWTKDGNLAST 261

Query: 317 LGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTS 376
           LGQHKGPIFALKWNK+GN+ILSAGVDKTTIIWDA +G+ +QQF FHSAPALDVDWQSN +
Sbjct: 262 LGQHKGPIFALKWNKKGNFILSAGVDKTTIIWDAHTGEAKQQFPFHSAPALDVDWQSNNT 321

Query: 377 FASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKD 436
           FASCSTD  IHVCKL  D+P+K+F+GHTNEVNAIKWDP G LLASCSDDMTLKIWS+ +D
Sbjct: 322 FASCSTDMCIHVCKLGQDRPIKTFQGHTNEVNAIKWDPTGNLLASCSDDMTLKIWSMKQD 381

Query: 437 NCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYIL 496
           NCVHDLQAHNKEIYTIKWSPTGP T+NPN +L+                         + 
Sbjct: 382 NCVHDLQAHNKEIYTIKWSPTGPGTNNPNANLM-------------------------LA 416

Query: 497 SAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTSF-ASCSTDQHIHVCKLHSDKP 555
           SA  D T  +WD   G C    + H  P   V +  +  + AS S D+ +H+        
Sbjct: 417 SASFDSTVRLWDVDRGICIHTLTKHQEPVYSVAFSPDGRYLASGSFDKCVHIWNTQ---- 472

Query: 556 VKSFEGHTTGQLVHSYKGTGGIFEVCWNSRGDKVGASASDGSV 598
                   TG LVHSY+GTGGIFEVCWN+ GDKVGASASDGSV
Sbjct: 473 --------TGALVHSYRGTGGIFEVCWNAAGDKVGASASDGSV 507

F-box-like protein involved in the recruitment of the ubiquitin/19S proteasome complex to nuclear receptor-regulated transcription units. Plays an essential role in transcription activation mediated by nuclear receptors. Probably acts as integral component of the N-Cor corepressor complex that mediates the recruitment of the 19S proteasome complex, leading to the subsequent proteasomal degradation of N-Cor complex, thereby allowing cofactor exchange, and transcription activation.

Mus musculus (taxid: 10090)

>sp|Q4R8H1|TBL1X_MACFA F-box-like/WD repeat-containing protein TBL1X OS=Macaca fascicularis GN=TBL1X PE=2 SV=1

 Score =  509 bits (1312), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 250/403 (62%), Positives = 296/403 (73%), Gaps = 40/403 (9%)

Query: 197 NPPESMEVDASIEIPQSKATKLIGHESEVFICAWNPVKDFLASGSGDSTARIWDMTDSTK 256
           N  + ME+D  ++IP SKAT L GHESEVFICAWNPV D LASGSGDSTARIW++ +++ 
Sbjct: 199 NHAKPMEIDGEVDIPSSKATVLRGHESEVFICAWNPVSDLLASGSGDSTARIWNLNENS- 257

Query: 257 KDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFLATGSYDGYARIWTSDGSLKST 316
            +    Q+VLRHCI +GG +VPSNKDVTSLDWN NG+ LATGSYDG+ARIWT DG+L ST
Sbjct: 258 -NGGSTQLVLRHCIREGGHDVPSNKDVTSLDWNTNGTLLATGSYDGFARIWTEDGNLAST 316

Query: 317 LGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTS 376
           LGQHKGPIFALKWN++GNYILSAGVDKTTIIWDA +G+ +QQF FHSAPALDVDWQ+N +
Sbjct: 317 LGQHKGPIFALKWNRKGNYILSAGVDKTTIIWDAHTGEAKQQFPFHSAPALDVDWQNNMT 376

Query: 377 FASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKD 436
           FASCSTD  IHVC+L  D+PVK+F+GHTNEVNAIKWDP G+LLASCSDDMTLKIWS+ ++
Sbjct: 377 FASCSTDMCIHVCRLGCDRPVKTFQGHTNEVNAIKWDPSGMLLASCSDDMTLKIWSMKQE 436

Query: 437 NCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYIL 496
            C+HDLQAHNKEIYTIKWSPTGP TSNPN +++                         + 
Sbjct: 437 VCIHDLQAHNKEIYTIKWSPTGPATSNPNSNIM-------------------------LA 471

Query: 497 SAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTSF-ASCSTDQHIHVCKLHSDKP 555
           SA  D T  +WD   G C    + H  P   V +  +  + AS S D+ +H+    S   
Sbjct: 472 SASFDSTVRLWDIERGVCTHTLTKHQEPVYSVAFSPDGRYLASGSFDKCVHIWNTQS--- 528

Query: 556 VKSFEGHTTGQLVHSYKGTGGIFEVCWNSRGDKVGASASDGSV 598
                    G LVHSY+GTGGIFEVCWN+RGDKVGASASDGSV
Sbjct: 529 ---------GNLVHSYRGTGGIFEVCWNARGDKVGASASDGSV 562

F-box-like protein involved in the recruitment of the ubiquitin/19S proteasome complex to nuclear receptor-regulated transcription units. Plays an essential role in transcription activation mediated by nuclear receptors. Probably acts as integral component of corepressor complexes that mediates the recruitment of the 19S proteasome complex, leading to the subsequent proteasomal degradation of transcription repressor complexes, thereby allowing cofactor exchange.

Macaca fascicularis (taxid: 9541)

>sp|Q9QXE7|TBL1X_MOUSE F-box-like/WD repeat-containing protein TBL1X OS=Mus musculus GN=Tbl1x PE=2 SV=2

 Score =  509 bits (1311), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 253/403 (62%), Positives = 298/403 (73%), Gaps = 40/403 (9%)

Query: 197 NPPESMEVDASIEIPQSKATKLIGHESEVFICAWNPVKDFLASGSGDSTARIWDMTDSTK 256
           N  + ME+D  +EIP SKAT L GHESEVFICAWNPV D LASGSGDSTARIW++ +++ 
Sbjct: 157 NHSKPMEIDGDVEIPPSKATVLRGHESEVFICAWNPVSDLLASGSGDSTARIWNLNENS- 215

Query: 257 KDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFLATGSYDGYARIWTSDGSLKST 316
            +    Q+VLRHCI +GG +VPSNKDVTSLDWN++G+ LATGSYDG+ARIWT DG+L ST
Sbjct: 216 -NGGSTQLVLRHCIREGGHDVPSNKDVTSLDWNSDGTLLATGSYDGFARIWTEDGNLAST 274

Query: 317 LGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTS 376
           LGQHKGPIFALKWNK+GNYILSAGVDKTTIIWDA +G+ +QQF FHSAPALDVDWQ+NT+
Sbjct: 275 LGQHKGPIFALKWNKKGNYILSAGVDKTTIIWDAHTGEAKQQFPFHSAPALDVDWQNNTT 334

Query: 377 FASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKD 436
           FASCSTD  IHVC+L  D+PVK+F+GHTNEVNAIKWDP G+LLASCSDDMTLKIWS+ +D
Sbjct: 335 FASCSTDMCIHVCRLGCDRPVKTFQGHTNEVNAIKWDPSGMLLASCSDDMTLKIWSMKQD 394

Query: 437 NCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYIL 496
            CVHDLQAH+KEIYTIKWSPTGP TSNPN +++                         + 
Sbjct: 395 ACVHDLQAHSKEIYTIKWSPTGPATSNPNSNIM-------------------------LA 429

Query: 497 SAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTSF-ASCSTDQHIHVCKLHSDKP 555
           SA  D T  +WD   G C    + H  P   V +  +  + AS S D+ +H+    S   
Sbjct: 430 SASFDSTVRLWDVERGVCIHTLTKHQEPVYSVAFSPDGKYLASGSFDKCVHIWNTQS--- 486

Query: 556 VKSFEGHTTGQLVHSYKGTGGIFEVCWNSRGDKVGASASDGSV 598
                    G LVHSY+GTGGIFEVCWN+RGDKVGASASDGSV
Sbjct: 487 ---------GSLVHSYRGTGGIFEVCWNARGDKVGASASDGSV 520

F-box-like protein involved in the recruitment of the ubiquitin/19S proteasome complex to nuclear receptor-regulated transcription units. Plays an essential role in transcription activation mediated by nuclear receptors. Probably acts as integral component of corepressor complexes that mediates the recruitment of the 19S proteasome complex, leading to the subsequent proteasomal degradation of transcription repressor complexes, thereby allowing cofactor exchange.

Mus musculus (taxid: 10090)

>sp|Q9BZK7|TBL1R_HUMAN F-box-like/WD repeat-containing protein TBL1XR1 OS=Homo sapiens GN=TBL1XR1 PE=1 SV=1

 Score =  505 bits (1301), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 252/403 (62%), Positives = 294/403 (72%), Gaps = 40/403 (9%)

Query: 197 NPPESMEVDASIEIPQSKATKLIGHESEVFICAWNPVKDFLASGSGDSTARIWDMTDSTK 256
           N  + MEVD  +EIP +KA  L GHESEVFICAWNPV D LASGSGDSTARIW++++++ 
Sbjct: 144 NHTDMMEVDGDVEIPPNKAVVLRGHESEVFICAWNPVSDLLASGSGDSTARIWNLSENST 203

Query: 257 KDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFLATGSYDGYARIWTSDGSLKST 316
                 Q+VLRHCI +GG +VPSNKDVTSLDWN+ G+ LATGSYDG+ARIWT DG+L ST
Sbjct: 204 S--GSTQLVLRHCIREGGQDVPSNKDVTSLDWNSEGTLLATGSYDGFARIWTKDGNLAST 261

Query: 317 LGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTS 376
           LGQHKGPIFALKWNK+GN+ILSAGVDKTTIIWDA +G+ +QQF FHSAPALDVDWQSN +
Sbjct: 262 LGQHKGPIFALKWNKKGNFILSAGVDKTTIIWDAHTGEAKQQFPFHSAPALDVDWQSNNT 321

Query: 377 FASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKD 436
           FASCSTD  IHVCKL  D+P+K+F+GHTNEVNAIKWDP G LLASCSDDMTLKIWS+ +D
Sbjct: 322 FASCSTDMCIHVCKLGQDRPIKTFQGHTNEVNAIKWDPTGNLLASCSDDMTLKIWSMKQD 381

Query: 437 NCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYIL 496
           NCVHDLQAHNKEIYTIKWSPTGP T+NPN +L+                         + 
Sbjct: 382 NCVHDLQAHNKEIYTIKWSPTGPGTNNPNANLM-------------------------LA 416

Query: 497 SAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTSF-ASCSTDQHIHVCKLHSDKP 555
           SA  D T  +WD   G C    + H  P   V +  +  + AS S D+ +H+        
Sbjct: 417 SASFDSTVRLWDVDRGICIHTLTKHQEPVYSVAFSPDGRYLASGSFDKCVHIWNTQ---- 472

Query: 556 VKSFEGHTTGQLVHSYKGTGGIFEVCWNSRGDKVGASASDGSV 598
                   TG LVHSY+GTGGIFEVCWN+ GDKVGASASDGSV
Sbjct: 473 --------TGALVHSYRGTGGIFEVCWNAAGDKVGASASDGSV 507

F-box-like protein involved in the recruitment of the ubiquitin/19S proteasome complex to nuclear receptor-regulated transcription units. Plays an essential role in transcription activation mediated by nuclear receptors. Probably acts as integral component of the N-Cor corepressor complex that mediates the recruitment of the 19S proteasome complex, leading to the subsequent proteasomal degradation of N-Cor complex, thereby allowing cofactor exchange, and transcription activation.

Homo sapiens (taxid: 9606)

>sp|Q9BQ87|TBL1Y_HUMAN F-box-like/WD repeat-containing protein TBL1Y OS=Homo sapiens GN=TBL1Y PE=2 SV=1

 Score =  504 bits (1298), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 249/403 (61%), Positives = 295/403 (73%), Gaps = 40/403 (9%)

Query: 197 NPPESMEVDASIEIPQSKATKLIGHESEVFICAWNPVKDFLASGSGDSTARIWDMTDSTK 256
           N  + ME+D  +EIP +KAT L GHESEVFICAWNPV D LASGSGDSTARIW++ +++ 
Sbjct: 154 NHSKPMEIDGDVEIPPNKATVLRGHESEVFICAWNPVSDLLASGSGDSTARIWNLNENS- 212

Query: 257 KDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFLATGSYDGYARIWTSDGSLKST 316
            +    Q+VLRHCI +GG +VPSNKDVTSLDWN++G+ LA GSYDG+ARIWT +G+L ST
Sbjct: 213 -NGGSTQLVLRHCIREGGHDVPSNKDVTSLDWNSDGTLLAMGSYDGFARIWTENGNLAST 271

Query: 317 LGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTS 376
           LGQHKGPIFALKWNK+GNY+LSAGVDKTTIIWDA +G+ +QQF FHSAPALDVDWQ+N +
Sbjct: 272 LGQHKGPIFALKWNKKGNYVLSAGVDKTTIIWDAHTGEAKQQFPFHSAPALDVDWQNNMT 331

Query: 377 FASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKD 436
           FASCSTD  IHVC+L  D PVK+F+GHTNEVNAIKWDP G+LLASCSDDMTLKIWS+ +D
Sbjct: 332 FASCSTDMCIHVCRLGCDHPVKTFQGHTNEVNAIKWDPSGMLLASCSDDMTLKIWSMKQD 391

Query: 437 NCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYIL 496
            CVHDLQAH+KEIYTIKWSPTGP TSNPN S++                         + 
Sbjct: 392 ACVHDLQAHSKEIYTIKWSPTGPATSNPNSSIM-------------------------LA 426

Query: 497 SAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTSF-ASCSTDQHIHVCKLHSDKP 555
           SA  D T  +WD   G C      H  P   V +  +  + AS S D+++H+    S   
Sbjct: 427 SASFDSTVRLWDVEQGVCTHTLMKHQEPVYSVAFSPDGKYLASGSFDKYVHIWNTQS--- 483

Query: 556 VKSFEGHTTGQLVHSYKGTGGIFEVCWNSRGDKVGASASDGSV 598
                    G LVHSY+GTGGIFEVCWN+RGDKVGASASDGSV
Sbjct: 484 ---------GSLVHSYQGTGGIFEVCWNARGDKVGASASDGSV 517

F-box-like protein involved in the recruitment of the ubiquitin/19S proteasome complex to nuclear receptor-regulated transcription units. Plays an essential role in transcription activation mediated by nuclear receptors. Probably acts as integral component of corepressor complexes that mediates the recruitment of the 19S proteasome complex, leading to the subsequent proteasomal degradation of transcription repressor complexes, thereby allowing cofactor exchange.

Homo sapiens (taxid: 9606)

>sp|Q7SZM9|TB1RA_XENLA F-box-like/WD repeat-containing protein TBL1XR1-A OS=Xenopus laevis GN=tbl1xr1-a PE=1 SV=1

 Score =  503 bits (1296), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 252/403 (62%), Positives = 292/403 (72%), Gaps = 40/403 (9%)

Query: 197 NPPESMEVDASIEIPQSKATKLIGHESEVFICAWNPVKDFLASGSGDSTARIWDMTDSTK 256
           N  + MEVD  +EIP SKA  L GHESEVFICAWNPV D LASGSGDSTARIW++++++ 
Sbjct: 149 NHTDMMEVDGDVEIPSSKAVVLRGHESEVFICAWNPVSDLLASGSGDSTARIWNLSENST 208

Query: 257 KDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFLATGSYDGYARIWTSDGSLKST 316
                 Q+VLRHCI +GG +VPSNKDVTSLDWN+ G+ LATGSYDG+ARIWT DG+L ST
Sbjct: 209 S--GSTQLVLRHCIREGGQDVPSNKDVTSLDWNSEGTLLATGSYDGFARIWTKDGNLAST 266

Query: 317 LGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTS 376
           LGQHKGPIFALKWNK+GN+ILSAGVDKTTIIWDA +G+ +QQF FHSAPALDVDWQSN +
Sbjct: 267 LGQHKGPIFALKWNKKGNFILSAGVDKTTIIWDAHTGEAKQQFPFHSAPALDVDWQSNNT 326

Query: 377 FASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKD 436
           FASCSTD  IHVCKL  D+P+K+F+GHTNEVNAIKWDP G LLASCSDDMTLKIWS+  D
Sbjct: 327 FASCSTDMCIHVCKLGQDRPIKTFQGHTNEVNAIKWDPTGNLLASCSDDMTLKIWSMKHD 386

Query: 437 NCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYIL 496
            CVHDLQAHNKEIYTIKWSPTGP T+NPN +L+                         + 
Sbjct: 387 TCVHDLQAHNKEIYTIKWSPTGPGTNNPNANLM-------------------------LA 421

Query: 497 SAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTSF-ASCSTDQHIHVCKLHSDKP 555
           SA  D T  +WD   G C    + H  P   V +  +  + AS S D+ +H+        
Sbjct: 422 SASFDSTVRLWDVDRGICIHTLTKHQEPVYSVAFSPDGRYLASGSFDKCVHIWNTQ---- 477

Query: 556 VKSFEGHTTGQLVHSYKGTGGIFEVCWNSRGDKVGASASDGSV 598
                   TG LVHSY+GTGGIFEVCWN+ GDKVGASASDGSV
Sbjct: 478 --------TGALVHSYRGTGGIFEVCWNAAGDKVGASASDGSV 512

F-box-like protein which acts as an integral component of the N-CoR transcriptional corepressor complex. Probably regulates transcription activation mediated by nuclear receptors. May mediate the recruitment of the 19S proteasome complex, leading to the subsequent proteasomal degradation of the N-CoR complex, thereby allowing cofactor exchange and transcription activation.

Xenopus laevis (taxid: 8355)

>sp|Q6GPC6|TB1RB_XENLA F-box-like/WD repeat-containing protein TBL1XR1-B OS=Xenopus laevis GN=tbl1xr1-b PE=2 SV=1

 Score =  503 bits (1296), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 252/403 (62%), Positives = 292/403 (72%), Gaps = 40/403 (9%)

Query: 197 NPPESMEVDASIEIPQSKATKLIGHESEVFICAWNPVKDFLASGSGDSTARIWDMTDSTK 256
           N  + MEVD  +EIP SKA  L GHESEVFICAWNPV D LASGSGDSTARIW++++++ 
Sbjct: 152 NHTDMMEVDGDVEIPPSKAVVLRGHESEVFICAWNPVSDLLASGSGDSTARIWNLSENST 211

Query: 257 KDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFLATGSYDGYARIWTSDGSLKST 316
                 Q+VLRHCI +GG +VPSNKDVTSLDWN+ G+ LATGSYDG+ARIWT DG+L ST
Sbjct: 212 S--GSTQLVLRHCIREGGQDVPSNKDVTSLDWNSEGTLLATGSYDGFARIWTKDGNLAST 269

Query: 317 LGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTS 376
           LGQHKGPIFALKWNK+GN+ILSAGVDKTTIIWDA +G+ +QQF FHSAPALDVDWQSN +
Sbjct: 270 LGQHKGPIFALKWNKKGNFILSAGVDKTTIIWDAHTGEAKQQFPFHSAPALDVDWQSNNT 329

Query: 377 FASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKD 436
           FASCSTD  IHVCKL  D+P+K+F+GHTNEVNAIKWDP G LLASCSDDMTLKIWS+  D
Sbjct: 330 FASCSTDMCIHVCKLGQDRPIKTFQGHTNEVNAIKWDPTGNLLASCSDDMTLKIWSMKHD 389

Query: 437 NCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYIL 496
            CVHDLQAHNKEIYTIKWSPTGP T+NPN +L+                         + 
Sbjct: 390 TCVHDLQAHNKEIYTIKWSPTGPGTNNPNANLM-------------------------LA 424

Query: 497 SAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTSF-ASCSTDQHIHVCKLHSDKP 555
           SA  D T  +WD   G C    + H  P   V +  +  + AS S D+ +H+        
Sbjct: 425 SASFDSTVRLWDVDRGICIHTLTKHQEPVYSVAFSPDGRYLASGSFDKCVHIWNTQ---- 480

Query: 556 VKSFEGHTTGQLVHSYKGTGGIFEVCWNSRGDKVGASASDGSV 598
                   TG LVHSY+GTGGIFEVCWN+ GDKVGASASDGSV
Sbjct: 481 --------TGALVHSYRGTGGIFEVCWNAAGDKVGASASDGSV 515

F-box-like protein which acts as an integral component of the N-CoR transcriptional corepressor complex. Probably regulates transcription activation mediated by nuclear receptors. May mediate the recruitment of the 19S proteasome complex, leading to the subsequent proteasomal degradation of the N-CoR complex, thereby allowing cofactor exchange and transcription activation.

Xenopus laevis (taxid: 8355)

>sp|Q8YRI1|YY46_NOSS1 Uncharacterized WD repeat-containing protein alr3466 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=alr3466 PE=4 SV=1

 Score =  175 bits (443), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 130/458 (28%), Positives = 219/458 (47%), Gaps = 73/458 (15%)

Query: 121  TLPLWDVERGECLNTLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKG 180
            T+ LWD+  G+CL T   HT  V SV FSP+   LASGS D+ V +W   +G+ ++ ++G
Sbjct: 929  TVRLWDISSGQCLKTFKGHTSRVRSVVFSPNSLMLASGSSDQTVRLWDISSGECLYIFQG 988

Query: 181  -TGGIFEVCWNSRGTPPNPPESMEVDASIEIPQSKATKLIGHESEVFICAWNPVKDFLAS 239
             TG ++ V +N  G+                                          LA+
Sbjct: 989  HTGWVYSVAFNLDGS-----------------------------------------MLAT 1007

Query: 240  GSGDSTARIWDMTDSTKKDPKELQIVLRHC--ISKGGTEVPSNKDVTSLDWNNNGSFLAT 297
            GSGD T R+WD++ S              C  I +G T       V S+ ++++G+ LA+
Sbjct: 1008 GSGDQTVRLWDISSS-------------QCFYIFQGHTSC-----VRSVVFSSDGAMLAS 1049

Query: 298  GSYDGYARIW-TSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCE 356
            GS D   R+W  S G+   TL  H   + ++ ++  G  + S G D+   +WD +SG C 
Sbjct: 1050 GSDDQTVRLWDISSGNCLYTLQGHTSCVRSVVFSPDGAMLASGGDDQIVRLWDISSGNCL 1109

Query: 357  QQFSFHSAPALDVDWQSN-TSFASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQ 415
                 +++    + +  N  + A+ S+DQ + +  + S K + + +GHTN VNA+ + P 
Sbjct: 1110 YTLQGYTSWVRFLVFSPNGVTLANGSSDQIVRLWDISSKKCLYTLQGHTNWVNAVAFSPD 1169

Query: 416  GLLLASCSDDMTLKIWSLDKDNCVHDLQAHNKEIYTIKWSPTGPE----TSNPNMSLIFI 471
            G  LAS S D T+++W +    C++ LQ H   + ++ ++P G      +S+  + L  I
Sbjct: 1170 GATLASGSGDQTVRLWDISSSKCLYILQGHTSWVNSVVFNPDGSTLASGSSDQTVRLWEI 1229

Query: 472  LKS----TLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALD 527
              S    T   H   + ++ +N  G+ + S   DKT  +WD +S +C   F  H+     
Sbjct: 1230 NSSKCLCTFQGHTSWVNSVVFNPDGSMLASGSSDKTVRLWDISSSKCLHTFQGHTNWVNS 1289

Query: 528  VDWQSNTS-FASCSTDQHIHVCKLHSDKPVKSFEGHTT 564
            V +  + S  AS S DQ + + ++ S K + +F+GHT+
Sbjct: 1290 VAFNPDGSMLASGSGDQTVRLWEISSSKCLHTFQGHTS 1327

Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	602
380017571	504	PREDICTED: F-box-like/WD repeat-containi	0.823	0.984	0.603	0.0
295987193	560	hypothetical protein [Drosophila pseudoo	0.906	0.975	0.533	1e-166
295987187	560	hypothetical protein [Drosophila pseudoo	0.897	0.964	0.527	1e-166
295987191	560	hypothetical protein [Drosophila pseudoo	0.897	0.964	0.527	1e-166
195168990	560	GL13421 [Drosophila persimilis] gi|19410	0.906	0.975	0.531	1e-165
295987199	560	hypothetical protein [Drosophila pseudoo	0.897	0.964	0.527	1e-165
295987189	560	hypothetical protein [Drosophila pseudoo	0.906	0.975	0.531	1e-165
295987205	560	hypothetical protein [Drosophila pseudoo	0.906	0.975	0.531	1e-165
295987197	560	hypothetical protein [Drosophila pseudoo	0.906	0.975	0.531	1e-165
351705095	883	F-box-like/WD repeat-containing protein	0.833	0.568	0.515	1e-164

>gi|380017571|ref|XP_003692726.1| PREDICTED: F-box-like/WD repeat-containing protein TBL1XR1-like isoform 2 [Apis florea]

 Score =  660 bits (1704), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 362/600 (60%), Positives = 409/600 (68%), Gaps = 104/600 (17%)

Query: 1   MTYSSDEVNFLVYRYLQESGFQHSAYTFGIESHISQSNIDGALVPPAALLSIIQKGLQYT 60
           M++SSDEVNFLVYRYLQESGFQHSAYTFGIESHISQSNI+GALVPPAALLSI+QKGLQYT
Sbjct: 1   MSFSSDEVNFLVYRYLQESGFQHSAYTFGIESHISQSNINGALVPPAALLSILQKGLQYT 60

Query: 61  EAEISVGENGQEQRPTESLSLIDAVLPDFVANRQNQLNSQRTNNPSTGPAITNGEEVHRL 120
           EAEIS+GE+G EQR  ESLSLIDAV+PD VA+RQNQ  +Q+     T    TNGEE    
Sbjct: 61  EAEISIGEDGTEQRMVESLSLIDAVMPDVVASRQNQ-INQQKQQVKTEVQDTNGEE---- 115

Query: 121 TLPLWDVERGECLNTLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKG 180
                                          G F+   +F                 Y  
Sbjct: 116 -------------------------------GNFIYYNNF-----------------YNN 127

Query: 181 TGGIFEVCWNSRGTPPNPPESMEVDASIEIPQSKATKLIGHESEVFICAWNPVKDFLASG 240
               ++  ++  GTP           ++EIP +KAT L GHESEVFICAWNP  D LASG
Sbjct: 128 ISYNYQELFHYPGTP----------CAVEIPDTKATILRGHESEVFICAWNPTTDLLASG 177

Query: 241 SGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFLATGSY 300
           SGDSTARIWDM+ S++  P   Q+VLRHCI KGGTEVPSNKDVTSLDW  +G+ LATGSY
Sbjct: 178 SGDSTARIWDMSGSSQA-PN--QLVLRHCIQKGGTEVPSNKDVTSLDWKCDGTLLATGSY 234

Query: 301 DGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFS 360
           DGYARIW +DG L STLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDA SGQC QQFS
Sbjct: 235 DGYARIWKTDGKLASTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAESGQCTQQFS 294

Query: 361 FHSAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLA 420
           FH APALDVDWQ+NTSFASCSTDQ IHVCKL+ DKP+KSF+GHTNEVNAIKWDPQG LLA
Sbjct: 295 FHCAPALDVDWQTNTSFASCSTDQCIHVCKLNVDKPIKSFQGHTNEVNAIKWDPQGNLLA 354

Query: 421 SCSDDMTLKIWSLDKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHK 480
           SCSDDM+LKIWS+ +D  VHDLQAH+KEIYTIKWSPTGP T NPNM+L            
Sbjct: 355 SCSDDMSLKIWSMKQDTWVHDLQAHSKEIYTIKWSPTGPGTHNPNMNLT----------- 403

Query: 481 GPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTSF-ASC 539
                         + SA  D T  +WD   G C  + + H+ P   V +  +  F AS 
Sbjct: 404 --------------LASASFDSTVRLWDVERGACIHRLTKHTEPVYSVAFSPDGKFLASG 449

Query: 540 STDQHIHVCKLHSDKPVKSFEGHTTGQLVHSYKGTGGIFEVCWNSRGDKVGASASDGSVF 599
           S D+ +H+    +            GQLVHSY+GTGGIFEVCWNSRGDKVGASASDGSVF
Sbjct: 450 SFDKCVHIWSTQN------------GQLVHSYQGTGGIFEVCWNSRGDKVGASASDGSVF 497

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|295987193|gb|ADG65016.1| hypothetical protein [Drosophila pseudoobscura]

 Score =  591 bits (1524), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 323/606 (53%), Positives = 395/606 (65%), Gaps = 60/606 (9%)

Query: 1   MTYSSDEVNFLVYRYLQESGFQHSAYTFGIESHISQSNIDGALVPPAALLSIIQKGLQYT 60
           M++SSDEVNFLVYRYLQESGF HSAY FGIES+++++NI+G+LVPPAALL+I+QKGL YT
Sbjct: 1   MSFSSDEVNFLVYRYLQESGFLHSAYVFGIESNVARTNINGSLVPPAALLTILQKGLLYT 60

Query: 61  EAEISVGENGQEQRPTESLSLIDAVLPDFVANRQNQLNSQRTNNPSTGPAITNGEEVHRL 120
           E E SVG +G+  R  E LSLIDAV+PD           + T + ST  +   G      
Sbjct: 61  EVEWSVGTDGEVGRLIEGLSLIDAVMPD-------SKGPKATGSTSTAESTPEGGSRGSA 113

Query: 121 TLPLWDVERGECLNTLTRHTEPVYSVAFSPDGKFLASGSFDKCVH-IWSARTGQ--LVHS 177
             P      G   N   + +E   + A S D    ++      V   +  + G+  +V +
Sbjct: 114 ASP-----SGSRGNKNPQASESSNANATSIDDSIPSTSKKAVAVSTFYPKKPGKPSIVAA 168

Query: 178 YKG---TGGIFEVCWNSRGTPPNPPESMEVDASIEIPQSKATKLIGHESEVFICAWNPVK 234
           Y     +    E  +++ G+P  P E ME+  S+EIP+S+   L GHE EVFICAWNP +
Sbjct: 169 YTAPDHSPASSETDFSAGGSPA-PVEPMEIVGSVEIPESEVCALRGHEGEVFICAWNPNR 227

Query: 235 DFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSF 294
           D LASGSGDSTARIW+MT S        Q+VLRH I   G +   NKDVTSLDWN +GS 
Sbjct: 228 DLLASGSGDSTARIWNMTGSKAHSS---QLVLRHSIETDGPQFTGNKDVTSLDWNCDGSM 284

Query: 295 LATGSYDGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQ 354
           LATGSYDGYARIW +DGSL  TLGQHKGPIFALKWNK GNYI+SAGVDKTTIIWDA++G+
Sbjct: 285 LATGSYDGYARIWKTDGSLTLTLGQHKGPIFALKWNKYGNYIVSAGVDKTTIIWDASTGK 344

Query: 355 CEQQFSFHSAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDP 414
           C QQF+FHSAPALDVDWQ+N +FASCSTDQ I VC+L   +P+K+F GHTNEVNAIKW P
Sbjct: 345 CTQQFAFHSAPALDVDWQTNQAFASCSTDQRIFVCRLGETEPLKTFCGHTNEVNAIKWCP 404

Query: 415 QGLLLASCSDDMTLKIWSLDKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKS 474
           QGLLLASCSDD+TLKIW++++D C  DL AH+KEIYTIKWSPTGP T+NPNM+L+     
Sbjct: 405 QGLLLASCSDDLTLKIWTMNRDRCCQDLLAHSKEIYTIKWSPTGPSTNNPNMNLV----- 459

Query: 475 TLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNT 534
                               + SA  D T  +WD   G C    S H+ P   V +  + 
Sbjct: 460 --------------------LASASFDSTVRLWDVERGSCIYTLSKHTEPVYSVAFSPDG 499

Query: 535 S-FASCSTDQHIHVCKLHSDKPVKSFEGHTTGQLVHSYKGTGGIFEVCWNSRGDKVGASA 593
              AS S D+ +H+                TG+LVHSYKGTGGIFEVCWNS G KVGASA
Sbjct: 500 KHLASGSFDKCVHIWSTQ------------TGELVHSYKGTGGIFEVCWNSDGSKVGASA 547

Query: 594 SDGSVF 599
           SDG +F
Sbjct: 548 SDGDIF 553

Source: Drosophila pseudoobscura

Species: Drosophila pseudoobscura

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|295987187|gb|ADG65013.1| hypothetical protein [Drosophila pseudoobscura] gi|295987203|gb|ADG65021.1| hypothetical protein [Drosophila pseudoobscura] gi|295987207|gb|ADG65023.1| hypothetical protein [Drosophila pseudoobscura]

 Score =  590 bits (1520), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 323/612 (52%), Positives = 397/612 (64%), Gaps = 72/612 (11%)

Query: 1   MTYSSDEVNFLVYRYLQESGFQHSAYTFGIESHISQSNIDGALVPPAALLSIIQKGLQYT 60
           M++SSDEVNFLVYRYLQESGF HSAY FGIES+++++NI+G+LVPPAALL+I+QKGL YT
Sbjct: 1   MSFSSDEVNFLVYRYLQESGFLHSAYVFGIESNVARTNINGSLVPPAALLTILQKGLLYT 60

Query: 61  EAEISVGENGQEQRPTESLSLIDAVLPDFVANRQNQLNSQRTNNPSTG-------PAITN 113
           E E SVG +G+  R  E LSLIDAV+PD    +     S   + P  G       P+ + 
Sbjct: 61  EVEWSVGTDGEVGRLIEGLSLIDAVMPDSKGPKATGSTSTAESTPEGGSRGSAASPSGSR 120

Query: 114 GEEVHRLTLPLWDVERGECLNTLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQ 173
           G +  + +      E      T    + P      S   K +A  +F      +  + G+
Sbjct: 121 GSKNPQAS------ESSNANATSIDDSIP------STSKKAVAVSTF------YPKKPGK 162

Query: 174 --LVHSYKG---TGGIFEVCWNSRGTPPNPPESMEVDASIEIPQSKATKLIGHESEVFIC 228
             +V +Y     +    E  +++ G+P  P E ME+  S+EIP+S+   L GHE EVFIC
Sbjct: 163 PSIVAAYTAPDHSPASSETDFSAGGSPV-PVEPMEIVGSVEIPESEVCALRGHEGEVFIC 221

Query: 229 AWNPVKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDW 288
           AWNP +D LASGSGDSTARIW+MT S        Q+VLRH I   G +   NKDVTSLDW
Sbjct: 222 AWNPNRDLLASGSGDSTARIWNMTGSKAHSS---QLVLRHSIETDGPQFTGNKDVTSLDW 278

Query: 289 NNNGSFLATGSYDGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIW 348
           N +GS LATGSYDGYARIW +DGSL  TLGQHKGPIFALKWNK GNYI+SAGVDKTTIIW
Sbjct: 279 NCDGSMLATGSYDGYARIWKTDGSLTLTLGQHKGPIFALKWNKYGNYIVSAGVDKTTIIW 338

Query: 349 DAASGQCEQQFSFHSAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEGHTNEVN 408
           DA++G+C QQF+FHSAPALDVDWQ+N +FASCSTDQ I VC+L   +P+K+F GHTNEVN
Sbjct: 339 DASTGKCTQQFAFHSAPALDVDWQTNQAFASCSTDQRIFVCRLGETEPLKTFCGHTNEVN 398

Query: 409 AIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSL 468
           AIKW PQGLLLASCSDD+TLKIW++++D C  DL AH+KEIYTIKWSPTGP T+NPNM+L
Sbjct: 399 AIKWCPQGLLLASCSDDLTLKIWTMNRDRCCQDLLAHSKEIYTIKWSPTGPSTNNPNMNL 458

Query: 469 IFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDV 528
           +                         + SA  D T  +WD   G C    S H+ P   V
Sbjct: 459 V-------------------------LASASFDSTVRLWDVERGSCIYTLSKHTEPVYSV 493

Query: 529 DWQSNTS-FASCSTDQHIHVCKLHSDKPVKSFEGHTTGQLVHSYKGTGGIFEVCWNSRGD 587
            +  +    AS S D+ +H+                TG+LVHSYKGTGGIFEVCWNS G 
Sbjct: 494 AFSPDGKHLASGSFDKCVHIWSTQ------------TGELVHSYKGTGGIFEVCWNSDGS 541

Query: 588 KVGASASDGSVF 599
           KVGASASDG +F
Sbjct: 542 KVGASASDGDIF 553

Source: Drosophila pseudoobscura

Species: Drosophila pseudoobscura

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|295987191|gb|ADG65015.1| hypothetical protein [Drosophila pseudoobscura]

 Score =  590 bits (1520), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 323/612 (52%), Positives = 397/612 (64%), Gaps = 72/612 (11%)

Query: 1   MTYSSDEVNFLVYRYLQESGFQHSAYTFGIESHISQSNIDGALVPPAALLSIIQKGLQYT 60
           M++SSDEVNFLVYRYLQESGF HSAY FGIES+++++NI+G+LVPPAALL+I+QKGL YT
Sbjct: 1   MSFSSDEVNFLVYRYLQESGFLHSAYVFGIESNVARTNINGSLVPPAALLTILQKGLLYT 60

Query: 61  EAEISVGENGQEQRPTESLSLIDAVLPDFVANRQNQLNSQRTNNPSTG-------PAITN 113
           E E SVG +G+  R  E LSLIDAV+PD    +     S   + P  G       P+ + 
Sbjct: 61  EVEWSVGTDGEVGRLIEGLSLIDAVMPDSKGPKATGSTSTAESTPEGGSRGSAASPSGSR 120

Query: 114 GEEVHRLTLPLWDVERGECLNTLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQ 173
           G +  + +      E      T    + P      S   K +A  +F      +  + G+
Sbjct: 121 GNKNPQAS------ESSNANATTIDDSIP------STSKKAVAVSTF------YPKKPGK 162

Query: 174 --LVHSYKG---TGGIFEVCWNSRGTPPNPPESMEVDASIEIPQSKATKLIGHESEVFIC 228
             +V +Y     +    E  +++ G+P  P E ME+  S+EIP+S+   L GHE EVFIC
Sbjct: 163 PSIVAAYTAPDHSPASSETDFSAGGSPV-PVEPMEIVGSVEIPESEVCALRGHEGEVFIC 221

Query: 229 AWNPVKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDW 288
           AWNP +D LASGSGDSTARIW+MT S        Q+VLRH I   G +   NKDVTSLDW
Sbjct: 222 AWNPNRDLLASGSGDSTARIWNMTGSKAHSS---QLVLRHSIETDGPQFTGNKDVTSLDW 278

Query: 289 NNNGSFLATGSYDGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIW 348
           N +GS LATGSYDGYARIW +DGSL  TLGQHKGPIFALKWNK GNYI+SAGVDKTTIIW
Sbjct: 279 NCDGSMLATGSYDGYARIWKTDGSLTLTLGQHKGPIFALKWNKYGNYIVSAGVDKTTIIW 338

Query: 349 DAASGQCEQQFSFHSAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEGHTNEVN 408
           DA++G+C QQF+FHSAPALDVDWQ+N +FASCSTDQ I VC+L   +P+K+F GHTNEVN
Sbjct: 339 DASTGKCTQQFAFHSAPALDVDWQTNQAFASCSTDQRIFVCRLGETEPLKTFCGHTNEVN 398

Query: 409 AIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSL 468
           AIKW PQGLLLASCSDD+TLKIW++++D C  DL AH+KEIYTIKWSPTGP T+NPNM+L
Sbjct: 399 AIKWCPQGLLLASCSDDLTLKIWTMNRDRCCQDLLAHSKEIYTIKWSPTGPSTNNPNMNL 458

Query: 469 IFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDV 528
           +                         + SA  D T  +WD   G C    S H+ P   V
Sbjct: 459 V-------------------------LASASFDSTVRLWDVERGSCIYTLSKHTEPVYSV 493

Query: 529 DWQSNTS-FASCSTDQHIHVCKLHSDKPVKSFEGHTTGQLVHSYKGTGGIFEVCWNSRGD 587
            +  +    AS S D+ +H+                TG+LVHSYKGTGGIFEVCWNS G 
Sbjct: 494 AFSPDGKHLASGSFDKCVHIWSTQ------------TGELVHSYKGTGGIFEVCWNSDGS 541

Query: 588 KVGASASDGSVF 599
           KVGASASDG +F
Sbjct: 542 KVGASASDGDIF 553

Source: Drosophila pseudoobscura

Species: Drosophila pseudoobscura

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195168990|ref|XP_002025313.1| GL13421 [Drosophila persimilis] gi|194108769|gb|EDW30812.1| GL13421 [Drosophila persimilis]

 Score =  590 bits (1520), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 322/606 (53%), Positives = 396/606 (65%), Gaps = 60/606 (9%)

Query: 1   MTYSSDEVNFLVYRYLQESGFQHSAYTFGIESHISQSNIDGALVPPAALLSIIQKGLQYT 60
           M++SSDEVNFLVYRYLQESGF HSAY FGIES+++++NI+G+LVPPAALL+I+QKGL YT
Sbjct: 1   MSFSSDEVNFLVYRYLQESGFLHSAYVFGIESNVARTNINGSLVPPAALLTILQKGLLYT 60

Query: 61  EAEISVGENGQEQRPTESLSLIDAVLPDFVANRQNQLNSQRTNNPSTGPAITNGEEVHRL 120
           E E SVG +G+  R  E LSLIDAV+P       +    + T + ST  +   G      
Sbjct: 61  EVEWSVGTDGEVGRLIEGLSLIDAVMP-------DSKGPKATGSTSTAESTPEGGSRGSA 113

Query: 121 TLPLWDVERGECLNTLTRHTEPVYSVAFSPDGKFLASGSFDKCVH-IWSARTGQ--LVHS 177
             P      G   N   + +E   + A S D    ++      V   +  + G+  +V +
Sbjct: 114 ASP-----SGSRGNKNPQASESSNANATSIDDSIPSTSKKAVAVSTFYPKKPGKPSIVAA 168

Query: 178 YKG---TGGIFEVCWNSRGTPPNPPESMEVDASIEIPQSKATKLIGHESEVFICAWNPVK 234
           Y     +    E  +++ G+P  P E ME+  S+EIP+S+   L GHE EVFICAWNP +
Sbjct: 169 YTAPDHSPASSETDFSAGGSPV-PVEPMEIVGSVEIPESEVCALRGHEGEVFICAWNPNR 227

Query: 235 DFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSF 294
           D LASGSGDSTARIW+MT S        Q+VLRHCI   G +   NKDVTSLDWN +GS 
Sbjct: 228 DLLASGSGDSTARIWNMTGSKAHSS---QLVLRHCIETDGPQFTGNKDVTSLDWNCDGSM 284

Query: 295 LATGSYDGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQ 354
           LATGSYDGYARIW +DGSL  TLGQHKGPIFALKWNK GNYI+SAGVDKTTIIWDA++G+
Sbjct: 285 LATGSYDGYARIWKTDGSLTLTLGQHKGPIFALKWNKYGNYIVSAGVDKTTIIWDASTGK 344

Query: 355 CEQQFSFHSAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDP 414
           C QQF+FHSAPALDVDWQ++ +FASCSTDQ I VC+L   +P+K+F GHTNEVNAIKW P
Sbjct: 345 CTQQFAFHSAPALDVDWQTSQAFASCSTDQRIFVCRLGETEPLKTFCGHTNEVNAIKWCP 404

Query: 415 QGLLLASCSDDMTLKIWSLDKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKS 474
           QGLLLASCSDD+TLKIW++++D C  DL AH+KEIYTIKWSPTGP T+NPNM+L+     
Sbjct: 405 QGLLLASCSDDLTLKIWTMNRDRCCQDLLAHSKEIYTIKWSPTGPSTNNPNMNLV----- 459

Query: 475 TLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNT 534
                               + SA  D T  +WD   G C    S H+ P   V +  + 
Sbjct: 460 --------------------LASASFDSTVRLWDVERGSCIYTLSKHTEPVYSVAFSPDG 499

Query: 535 S-FASCSTDQHIHVCKLHSDKPVKSFEGHTTGQLVHSYKGTGGIFEVCWNSRGDKVGASA 593
              AS S D+ +H+                TG+LVHSYKGTGGIFEVCWNS G KVGASA
Sbjct: 500 KHLASGSFDKCVHIWSTQ------------TGELVHSYKGTGGIFEVCWNSDGSKVGASA 547

Query: 594 SDGSVF 599
           SDG +F
Sbjct: 548 SDGDIF 553

Source: Drosophila persimilis

Species: Drosophila persimilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|295987199|gb|ADG65019.1| hypothetical protein [Drosophila pseudoobscura]

 Score =  588 bits (1517), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 323/612 (52%), Positives = 396/612 (64%), Gaps = 72/612 (11%)

Query: 1   MTYSSDEVNFLVYRYLQESGFQHSAYTFGIESHISQSNIDGALVPPAALLSIIQKGLQYT 60
           M++SSDEVNFLVYRYLQESGF HSAY FGIES+++++NI+G+LVPPAALL+I+QKGL YT
Sbjct: 1   MSFSSDEVNFLVYRYLQESGFLHSAYVFGIESNVARTNINGSLVPPAALLTILQKGLLYT 60

Query: 61  EAEISVGENGQEQRPTESLSLIDAVLPDFVANRQNQLNSQRTNNPSTG-------PAITN 113
           E E SVG +G+  R  E LSLIDAV+PD    +     S   + P  G       P+ + 
Sbjct: 61  EVEWSVGTDGEVGRLIEGLSLIDAVMPDSKGPKATGSTSTAESTPEGGSRGSAASPSGSR 120

Query: 114 GEEVHRLTLPLWDVERGECLNTLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQ 173
           G +  + +      E      T    + P      S   K +A  +F      +  + G+
Sbjct: 121 GSKNPQAS------ESSNANATSIDDSIP------STSKKAVAVSTF------YPKKPGK 162

Query: 174 --LVHSYKG---TGGIFEVCWNSRGTPPNPPESMEVDASIEIPQSKATKLIGHESEVFIC 228
             +V +Y     +    E  +++ G+P  P E ME+  S+EIP+S+   L GHE EVFIC
Sbjct: 163 PSIVAAYTAPDHSPASSETDFSAGGSPV-PVEPMEIVGSVEIPESEVCALRGHEGEVFIC 221

Query: 229 AWNPVKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDW 288
           AWNP +D LASGSGDSTARIW+MT S        Q+VLRH I   G +   NKDVTSLDW
Sbjct: 222 AWNPNRDLLASGSGDSTARIWNMTGSKAHSS---QLVLRHSIETDGPQFTGNKDVTSLDW 278

Query: 289 NNNGSFLATGSYDGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIW 348
           N +GS LATGSYDGYARIW +DGSL  TLGQHKGPIFALKWNK GNYI+SAGVDKTTIIW
Sbjct: 279 NCDGSMLATGSYDGYARIWKTDGSLTLTLGQHKGPIFALKWNKYGNYIVSAGVDKTTIIW 338

Query: 349 DAASGQCEQQFSFHSAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEGHTNEVN 408
           DA +G+C QQF+FHSAPALDVDWQ+N +FASCSTDQ I VC+L   +P+K+F GHTNEVN
Sbjct: 339 DANTGKCTQQFAFHSAPALDVDWQTNQAFASCSTDQRIFVCRLGETEPLKTFCGHTNEVN 398

Query: 409 AIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSL 468
           AIKW PQGLLLASCSDD+TLKIW++++D C  DL AH+KEIYTIKWSPTGP T+NPNM+L
Sbjct: 399 AIKWCPQGLLLASCSDDLTLKIWTMNRDRCCQDLLAHSKEIYTIKWSPTGPSTNNPNMNL 458

Query: 469 IFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDV 528
           +                         + SA  D T  +WD   G C    S H+ P   V
Sbjct: 459 V-------------------------LASASFDSTVRLWDVERGSCIYTLSKHTEPVYSV 493

Query: 529 DWQSNTS-FASCSTDQHIHVCKLHSDKPVKSFEGHTTGQLVHSYKGTGGIFEVCWNSRGD 587
            +  +    AS S D+ +H+                TG+LVHSYKGTGGIFEVCWNS G 
Sbjct: 494 AFSPDGKHLASGSFDKCVHIWSTQ------------TGELVHSYKGTGGIFEVCWNSDGS 541

Query: 588 KVGASASDGSVF 599
           KVGASASDG +F
Sbjct: 542 KVGASASDGDIF 553

Source: Drosophila pseudoobscura

Species: Drosophila pseudoobscura

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|295987189|gb|ADG65014.1| hypothetical protein [Drosophila pseudoobscura] gi|295987195|gb|ADG65017.1| hypothetical protein [Drosophila pseudoobscura] gi|295987201|gb|ADG65020.1| hypothetical protein [Drosophila pseudoobscura]

 Score =  588 bits (1517), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 322/606 (53%), Positives = 395/606 (65%), Gaps = 60/606 (9%)

Query: 1   MTYSSDEVNFLVYRYLQESGFQHSAYTFGIESHISQSNIDGALVPPAALLSIIQKGLQYT 60
           M++SSDEVNFLVYRYLQESGF HSAY FGIES+++++NI+G+LVPPAALL+I+QKGL YT
Sbjct: 1   MSFSSDEVNFLVYRYLQESGFLHSAYVFGIESNVARTNINGSLVPPAALLTILQKGLLYT 60

Query: 61  EAEISVGENGQEQRPTESLSLIDAVLPDFVANRQNQLNSQRTNNPSTGPAITNGEEVHRL 120
           E E SVG +G+  R  E LSLIDAV+P       +    + T + ST  +   G      
Sbjct: 61  EVEWSVGTDGEVGRLIEGLSLIDAVMP-------DSKGPKATGSTSTAESTPEGGSRGSA 113

Query: 121 TLPLWDVERGECLNTLTRHTEPVYSVAFSPDGKFLASGSFDKCVH-IWSARTGQ--LVHS 177
             P      G   N   + +E   + A S D    ++      V   +  + G+  +V +
Sbjct: 114 ASP-----SGSRGNKNPQASESSNANATSIDDSIPSTSKKAVAVSTFYPKKPGKPSIVAA 168

Query: 178 YKG---TGGIFEVCWNSRGTPPNPPESMEVDASIEIPQSKATKLIGHESEVFICAWNPVK 234
           Y     +    E  +++ G+P  P E ME+  S+EIP+S+   L GHE EVFICAWNP +
Sbjct: 169 YTAPDHSPASSETDFSAGGSPV-PVEPMEIVGSVEIPESEVCALRGHEGEVFICAWNPNR 227

Query: 235 DFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSF 294
           D LASGSGDSTARIW+MT S        Q+VLRH I   G +   NKDVTSLDWN +GS 
Sbjct: 228 DLLASGSGDSTARIWNMTGSKAHSS---QLVLRHSIETDGPQFTGNKDVTSLDWNCDGSM 284

Query: 295 LATGSYDGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQ 354
           LATGSYDGYARIW +DGSL  TLGQHKGPIFALKWNK GNYI+SAGVDKTTIIWDA++G+
Sbjct: 285 LATGSYDGYARIWKTDGSLTLTLGQHKGPIFALKWNKYGNYIVSAGVDKTTIIWDASTGK 344

Query: 355 CEQQFSFHSAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDP 414
           C QQF+FHSAPALDVDWQ+N +FASCSTDQ I VC+L   +P+K+F GHTNEVNAIKW P
Sbjct: 345 CTQQFAFHSAPALDVDWQTNQAFASCSTDQRIFVCRLGETEPLKTFCGHTNEVNAIKWCP 404

Query: 415 QGLLLASCSDDMTLKIWSLDKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKS 474
           QGLLLASCSDD+TLKIW++++D C  DL AH+KEIYTIKWSPTGP T+NPNM+L+     
Sbjct: 405 QGLLLASCSDDLTLKIWTMNRDRCCQDLLAHSKEIYTIKWSPTGPSTNNPNMNLV----- 459

Query: 475 TLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNT 534
                               + SA  D T  +WD   G C    S H+ P   V +  + 
Sbjct: 460 --------------------LASASFDSTVRLWDVERGSCIYTLSKHTEPVYSVAFSPDG 499

Query: 535 S-FASCSTDQHIHVCKLHSDKPVKSFEGHTTGQLVHSYKGTGGIFEVCWNSRGDKVGASA 593
              AS S D+ +H+                TG+LVHSYKGTGGIFEVCWNS G KVGASA
Sbjct: 500 KHLASGSFDKCVHIWSTQ------------TGELVHSYKGTGGIFEVCWNSDGSKVGASA 547

Query: 594 SDGSVF 599
           SDG +F
Sbjct: 548 SDGDIF 553

Source: Drosophila pseudoobscura

Species: Drosophila pseudoobscura

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|295987205|gb|ADG65022.1| hypothetical protein [Drosophila pseudoobscura]

 Score =  587 bits (1513), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 322/606 (53%), Positives = 394/606 (65%), Gaps = 60/606 (9%)

Query: 1   MTYSSDEVNFLVYRYLQESGFQHSAYTFGIESHISQSNIDGALVPPAALLSIIQKGLQYT 60
           M++SSDEVNFLVYRYLQESGF HSAY FGIES+++++NI+G LVPPAALL+I+QKGL YT
Sbjct: 1   MSFSSDEVNFLVYRYLQESGFLHSAYVFGIESNVARTNINGNLVPPAALLTILQKGLLYT 60

Query: 61  EAEISVGENGQEQRPTESLSLIDAVLPDFVANRQNQLNSQRTNNPSTGPAITNGEEVHRL 120
           E E SVG +G+  R  E LSLIDAV+P       +    + T + ST  +   G      
Sbjct: 61  EVEWSVGTDGEVGRLIEGLSLIDAVMP-------DSKGPKATGSTSTAESTPEGGSRGSA 113

Query: 121 TLPLWDVERGECLNTLTRHTEPVYSVAFSPDGKFLASGSFDKCVH-IWSARTGQ--LVHS 177
             P      G   N   + +E   + A S D    ++      V   +  + G+  +V +
Sbjct: 114 ASP-----SGSRGNKNPQASESSNANATSIDDSIPSTSKKAVAVSTFYPKKPGKPSIVAA 168

Query: 178 YKG---TGGIFEVCWNSRGTPPNPPESMEVDASIEIPQSKATKLIGHESEVFICAWNPVK 234
           Y     +    E  +++ G+P  P E ME+  S+EIP+S+   L GHE EVFICAWNP +
Sbjct: 169 YTAPDHSPASSETDFSAGGSPV-PVEPMEIVGSVEIPESEVCALRGHEGEVFICAWNPNR 227

Query: 235 DFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSF 294
           D LASGSGDSTARIW+MT S        Q+VLRH I   G +   NKDVTSLDWN +GS 
Sbjct: 228 DLLASGSGDSTARIWNMTGSKAHSS---QLVLRHSIETDGPQFTGNKDVTSLDWNCDGSM 284

Query: 295 LATGSYDGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQ 354
           LATGSYDGYARIW +DGSL  TLGQHKGPIFALKWNK GNYI+SAGVDKTTIIWDA++G+
Sbjct: 285 LATGSYDGYARIWKTDGSLTLTLGQHKGPIFALKWNKYGNYIVSAGVDKTTIIWDASTGK 344

Query: 355 CEQQFSFHSAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDP 414
           C QQF+FHSAPALDVDWQ+N +FASCSTDQ I VC+L   +P+K+F GHTNEVNAIKW P
Sbjct: 345 CTQQFAFHSAPALDVDWQTNQAFASCSTDQRIFVCRLGETEPLKTFCGHTNEVNAIKWCP 404

Query: 415 QGLLLASCSDDMTLKIWSLDKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKS 474
           QGLLLASCSDD+TLKIW++++D C  DL AH+KEIYTIKWSPTGP T+NPNM+L+     
Sbjct: 405 QGLLLASCSDDLTLKIWTMNRDRCCQDLLAHSKEIYTIKWSPTGPSTNNPNMNLV----- 459

Query: 475 TLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNT 534
                               + SA  D T  +WD   G C    S H+ P   V +  + 
Sbjct: 460 --------------------LASASFDSTVRLWDVERGSCIYTLSKHTEPVYSVAFSPDG 499

Query: 535 S-FASCSTDQHIHVCKLHSDKPVKSFEGHTTGQLVHSYKGTGGIFEVCWNSRGDKVGASA 593
              AS S D+ +H+                TG+LVHSYKGTGGIFEVCWNS G KVGASA
Sbjct: 500 KHLASGSFDKCVHIWSTQ------------TGELVHSYKGTGGIFEVCWNSDGSKVGASA 547

Query: 594 SDGSVF 599
           SDG +F
Sbjct: 548 SDGDIF 553

Source: Drosophila pseudoobscura

Species: Drosophila pseudoobscura

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|295987197|gb|ADG65018.1| hypothetical protein [Drosophila pseudoobscura]

 Score =  587 bits (1513), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 322/606 (53%), Positives = 394/606 (65%), Gaps = 60/606 (9%)

Query: 1   MTYSSDEVNFLVYRYLQESGFQHSAYTFGIESHISQSNIDGALVPPAALLSIIQKGLQYT 60
           M++SSDEVNFLVYRYLQESGF HSAY FGIES+++++NI+G+LVPPAALL+I+QKGL YT
Sbjct: 1   MSFSSDEVNFLVYRYLQESGFLHSAYVFGIESNVARTNINGSLVPPAALLTILQKGLLYT 60

Query: 61  EAEISVGENGQEQRPTESLSLIDAVLPDFVANRQNQLNSQRTNNPSTGPAITNGEEVHRL 120
           E E SVG +G+  R  E LSLIDAV+P       +    + T + ST  +   G      
Sbjct: 61  EVEWSVGTDGEVGRLIEGLSLIDAVMP-------DSKGPKATGSTSTAESTPEGGSRGSA 113

Query: 121 TLPLWDVERGECLNTLTRHTEPVYSVAFSPDGKFLASGSFDKCVH-IWSARTGQ--LVHS 177
             P      G   N   + +E   + A S D    ++      V   +  + G+  +V +
Sbjct: 114 ASP-----SGSRGNKNPQASESSNANATSIDDSIPSTSKKAVAVSTFYPKKPGKPSIVAA 168

Query: 178 YKG---TGGIFEVCWNSRGTPPNPPESMEVDASIEIPQSKATKLIGHESEVFICAWNPVK 234
           Y     +    E  +++ G+P  P E ME+  S+EIP+S+   L GHE EVFICAWNP +
Sbjct: 169 YTAPDHSPASSETDFSAGGSPV-PVEPMEIVGSVEIPESEVCALRGHEGEVFICAWNPNR 227

Query: 235 DFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSF 294
           D LASGSGDSTARIW+MT S        Q+VLRH I   G +   NKDVTSLDWN +GS 
Sbjct: 228 DLLASGSGDSTARIWNMTGSKAHSS---QLVLRHSIETDGPQFTGNKDVTSLDWNCDGSM 284

Query: 295 LATGSYDGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQ 354
           LATGSYDGYARIW +DGSL  TLGQHKGPIFALKWNK GNYI+SAGVDKTTIIWDA +G+
Sbjct: 285 LATGSYDGYARIWKTDGSLTLTLGQHKGPIFALKWNKYGNYIVSAGVDKTTIIWDANTGK 344

Query: 355 CEQQFSFHSAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDP 414
           C QQF+FHSAPALDVDWQ+N +FASCSTDQ I VC+L   +P+K+F GHTNEVNAIKW P
Sbjct: 345 CTQQFAFHSAPALDVDWQTNQAFASCSTDQRIFVCRLGETEPLKTFCGHTNEVNAIKWCP 404

Query: 415 QGLLLASCSDDMTLKIWSLDKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKS 474
           QGLLLASCSDD+TLKIW++++D C  DL AH+KEIYTIKWSPTGP T+NPNM+L+     
Sbjct: 405 QGLLLASCSDDLTLKIWTMNRDRCCQDLLAHSKEIYTIKWSPTGPSTNNPNMNLV----- 459

Query: 475 TLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNT 534
                               + SA  D T  +WD   G C    S H+ P   V +  + 
Sbjct: 460 --------------------LASASFDSTVRLWDVERGSCIYTLSKHTEPVYSVAFSPDG 499

Query: 535 S-FASCSTDQHIHVCKLHSDKPVKSFEGHTTGQLVHSYKGTGGIFEVCWNSRGDKVGASA 593
              AS S D+ +H+                TG+LVHSYKGTGGIFEVCWNS G KVGASA
Sbjct: 500 KHLASGSFDKCVHIWSTQ------------TGELVHSYKGTGGIFEVCWNSDGSKVGASA 547

Query: 594 SDGSVF 599
           SDG +F
Sbjct: 548 SDGDIF 553

Source: Drosophila pseudoobscura

Species: Drosophila pseudoobscura

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|351705095|gb|EHB08014.1| F-box-like/WD repeat-containing protein TBL1X [Heterocephalus glaber]

 Score =  583 bits (1503), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 316/613 (51%), Positives = 378/613 (61%), Gaps = 111/613 (18%)

Query: 19  SGFQHSAYTFGIESHISQSNIDGALVPPAALLSIIQKGLQYTEAEISVGENGQ--EQRPT 76
           +GF HSA+TFGIESHISQSNI+G LVPPAAL+SI+QKGLQY EAEIS+ E+G   + RP 
Sbjct: 153 AGFSHSAFTFGIESHISQSNINGTLVPPAALISILQKGLQYVEAEISINEDGTVFDGRPI 212

Query: 77  ESLSLIDAVLPDFVANRQNQLNSQ-------------------------------RTNNP 105
           ESLSLIDAV+PD V  RQ     +                               + N P
Sbjct: 213 ESLSLIDAVMPDVVQTRQQAFREKLAQQQASAAASAAAAAAPTTTAAATAPAAVSQQNPP 272

Query: 106 STGPAITNGEEVHRLTLPLWDVERGECLNTLTRHTEPVYSVAFSPDGKFLASGSFDKCVH 165
             G A  NGEE   +                    E + S        FL          
Sbjct: 273 KNGEATVNGEENGAMK-------------------EKLLSCYLFLSSSFLP--------- 304

Query: 166 IWSARTGQLVHSYKGTGGIFEVCWNSRGTPPNPPESMEVDASIEIPQSKATKLIGHESEV 225
                       Y  T  +F   +  R + P     ME+D  +EI  SKAT L GHESEV
Sbjct: 305 ------------YAATSSVFLSGY--RHSKP-----MEIDGDVEIAPSKATVLRGHESEV 345

Query: 226 FICAWNPVKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTS 285
           FICAWNPV D LASGSGDSTARIW++ +S+   P   Q+VLRHCI +GG +VPSNKDVTS
Sbjct: 346 FICAWNPVSDLLASGSGDSTARIWNLNESSNGGPT--QLVLRHCIREGGHDVPSNKDVTS 403

Query: 286 LDWNNNGSFLATGSYDGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTT 345
           LDWN++G+ LATGSYDG+ARIWT DG+L STLGQHKGPIFALKWNK+GNYILSAGVDKTT
Sbjct: 404 LDWNSDGTLLATGSYDGFARIWTEDGNLASTLGQHKGPIFALKWNKKGNYILSAGVDKTT 463

Query: 346 IIWDAASGQCEQQFSFHSAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEGHTN 405
           IIWDA +G+ +QQF FHSAPALDVDWQ+N +FASCSTD  IHVC+L  D+PVK+F+GHTN
Sbjct: 464 IIWDAHTGEAKQQFPFHSAPALDVDWQNNMTFASCSTDMCIHVCRLGCDRPVKTFQGHTN 523

Query: 406 EVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHDLQAHNKEIYTIKWSPTGPETSNPN 465
           EVNAIKWDP G+LLASCSDDMTLKIWS+ +D CVHDLQAH+KEIYTIKWSPTGP TSNPN
Sbjct: 524 EVNAIKWDPSGMLLASCSDDMTLKIWSMKQDTCVHDLQAHSKEIYTIKWSPTGPATSNPN 583

Query: 466 MSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPA 525
            S++    +    H G                             + +        +APA
Sbjct: 584 ASIMLASGARPAAHPG-----------------------------AQETAHGLFPEAAPA 614

Query: 526 LDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEGHTTGQLVHSYKGTGGIFEVCWNSR 585
           LDVDWQ+N +FASCSTD  IHVC+L  D+PVK+F+GHT       +  +G +   C +  
Sbjct: 615 LDVDWQNNMTFASCSTDMCIHVCRLGCDRPVKTFQGHTNEVNAIKWDPSGMLLASCSDDM 674

Query: 586 GDKVGASASDGSV 598
             K+ +   D  V
Sbjct: 675 TLKIWSMKQDTCV 687

Source: Heterocephalus glaber

Species: Heterocephalus glaber

Genus: Heterocephalus

Family: Bathyergidae

Order: Rodentia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	602
FB|FBgn0263933	700	ebi "ebi" [Drosophila melanoga	0.453	0.39	0.761	1.2e-175
UNIPROTKB|E1BV27	523	TBL1X "Uncharacterized protein	0.450	0.518	0.747	3.9e-175
UNIPROTKB|B7TCI5	528	TBL1X "Transducin beta-like 1"	0.450	0.513	0.754	2.4e-153
UNIPROTKB|O60907	577	TBL1X "F-box-like/WD repeat-co	0.450	0.469	0.747	5e-153
MGI|MGI:1336172	527	Tbl1x "transducin (beta)-like	0.450	0.514	0.750	8.1e-153
RGD|1563868	527	Tbl1x "transducin (beta)-like	0.450	0.514	0.750	8.1e-153
UNIPROTKB|B8YE10	520	TBL1Y "Transducin (Beta)-like	0.450	0.521	0.743	2.5e-151
UNIPROTKB|C3UJQ7	524	TBL1Y "Transducin (Beta)-like	0.450	0.517	0.736	5.8e-150
UNIPROTKB|Q9BQ87	522	TBL1Y "F-box-like/WD repeat-co	0.450	0.519	0.736	1.5e-149
ZFIN|ZDB-GENE-040426-1192	511	tbl1xr1 "transducin (beta)-lik	0.445	0.524	0.748	4.6e-135

FB|FBgn0263933 ebi "ebi" [Drosophila melanogaster (taxid:7227)]

 Score = 1148 (409.2 bits), Expect = 1.2e-175, Sum P(3) = 1.2e-175
 Identities = 211/277 (76%), Positives = 238/277 (85%)

Query:   193 GTPPNPPESMEVDASIEIPQSKATKLIGHESEVFICAWNPVKDFLASGSGDSTARIWDMT 252
             GTP      M++D +IEIP+SKA  L GHESEVFICAWNP +D LASGSGDSTARIWDM+
Sbjct:   327 GTPA-ALVPMDIDENIEIPESKARVLRGHESEVFICAWNPSRDLLASGSGDSTARIWDMS 385

Query:   253 DSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFLATGSYDGYARIWTSDGS 312
             D+        Q+VLRHCI KGG EVPSNKDVTSLDWN +GS LATGSYDGYARIW +DG 
Sbjct:   386 DANTNSN---QLVLRHCIQKGGAEVPSNKDVTSLDWNCDGSLLATGSYDGYARIWKTDGR 442

Query:   313 LKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQ 372
             L STLGQHKGPIFALKWNK GNYILSAGVDKTTIIWDA++GQC QQF+FHSAPALDVDWQ
Sbjct:   443 LASTLGQHKGPIFALKWNKCGNYILSAGVDKTTIIWDASTGQCTQQFAFHSAPALDVDWQ 502

Query:   373 SNTSFASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWS 432
             +N +FASCSTDQ IHVC+L  ++P+K+F+GHTNEVNAIKW PQG LLASCSDDMTLKIWS
Sbjct:   503 TNQAFASCSTDQRIHVCRLGVNEPIKTFKGHTNEVNAIKWCPQGQLLASCSDDMTLKIWS 562

Query:   433 LDKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLI 469
             +++D C HDLQAH+KEIYTIKWSPTGP T+NPN +LI
Sbjct:   563 MNRDRCCHDLQAHSKEIYTIKWSPTGPGTNNPNTNLI 599

GO:0042058 "regulation of epidermal growth factor receptor signaling pathway" evidence=IMP

GO:0005634 "nucleus" evidence=IDA

GO:0005525 "GTP binding" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

GO:0051726 "regulation of cell cycle" evidence=IMP

GO:0007173 "epidermal growth factor receptor signaling pathway" evidence=TAS

GO:0030162 "regulation of proteolysis" evidence=TAS

GO:0042676 "compound eye cone cell fate commitment" evidence=TAS

GO:0007219 "Notch signaling pathway" evidence=TAS

GO:0017053 "transcriptional repressor complex" evidence=IGI;IPI

GO:0042461 "photoreceptor cell development" evidence=IMP

GO:0003682 "chromatin binding" evidence=IDA

GO:0031065 "positive regulation of histone deacetylation" evidence=IDA

GO:0070491 "repressing transcription factor binding" evidence=IPI

GO:0001106 "RNA polymerase II transcription corepressor activity" evidence=IPI

GO:0035220 "wing disc development" evidence=IGI;IMP

GO:0045747 "positive regulation of Notch signaling pathway" evidence=IGI;IDA

GO:0005700 "polytene chromosome" evidence=IDA

GO:0045572 "positive regulation of imaginal disc growth" evidence=IGI;IMP

GO:0022416 "chaeta development" evidence=IMP

UNIPROTKB|E1BV27 TBL1X "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 1146 (408.5 bits), Expect = 3.9e-175, Sum P(3) = 3.9e-175
 Identities = 204/273 (74%), Positives = 238/273 (87%)

Query:   197 NPPESMEVDASIEIPQSKATKLIGHESEVFICAWNPVKDFLASGSGDSTARIWDMTDSTK 256
             N  + ME+D  +EIP +KAT L GHESEVFICAWNPV D LASGSGDSTARIW++ +++ 
Sbjct:   153 NHSKPMEIDGDVEIPPNKATVLRGHESEVFICAWNPVSDLLASGSGDSTARIWNLNENSN 212

Query:   257 KDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFLATGSYDGYARIWTSDGSLKST 316
                   Q+VLRHCI +GG +VPSNKDVTSLDWN++G+ LATGSYDG+ARIWT DG+L ST
Sbjct:   213 SG--STQLVLRHCIREGGHDVPSNKDVTSLDWNSDGTLLATGSYDGFARIWTEDGNLAST 270

Query:   317 LGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTS 376
             LGQHKGPIFALKWNK+GNYILSAGVDKTTIIWDA +G+ +QQF FHSAPALDVDWQ+NT+
Sbjct:   271 LGQHKGPIFALKWNKKGNYILSAGVDKTTIIWDAHTGEAKQQFPFHSAPALDVDWQNNTT 330

Query:   377 FASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKD 436
             FASCSTD  IHVC+L  D+PVK+F+GHTNEVNAIKWDP G+LLASCSDDMTLKIWS+ +D
Sbjct:   331 FASCSTDMCIHVCRLGCDRPVKTFQGHTNEVNAIKWDPSGMLLASCSDDMTLKIWSMKQD 390

Query:   437 NCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLI 469
              CVHDLQAH+KEIYTIKWSPTGP TSNPN +++
Sbjct:   391 TCVHDLQAHSKEIYTIKWSPTGPGTSNPNSNIM 423

GO:0003682 "chromatin binding" evidence=IEA

GO:0003714 "transcription corepressor activity" evidence=IEA

GO:0005667 "transcription factor complex" evidence=IEA

GO:0043161 "proteasomal ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0043627 "response to estrogen stimulus" evidence=IEA

GO:0044212 "transcription regulatory region DNA binding" evidence=IEA

GO:0045444 "fat cell differentiation" evidence=IEA

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IEA

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IEA

UNIPROTKB|B7TCI5 TBL1X "Transducin beta-like 1" [Bos taurus (taxid:9913)]

 Score = 1151 (410.2 bits), Expect = 2.4e-153, Sum P(2) = 2.4e-153
 Identities = 206/273 (75%), Positives = 238/273 (87%)

Query:   197 NPPESMEVDASIEIPQSKATKLIGHESEVFICAWNPVKDFLASGSGDSTARIWDMTDSTK 256
             N  + ME+D  +EIP SKAT L GHESEVFICAWNPV D LASGSGDSTARIW++ +++ 
Sbjct:   158 NHSKPMEIDGDVEIPPSKATVLRGHESEVFICAWNPVSDLLASGSGDSTARIWNLNENSN 217

Query:   257 KDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFLATGSYDGYARIWTSDGSLKST 316
                   Q+VLRHCI +GG +VPSNKDVTSLDWN++G+ LATGSYDG+ARIWT DG+L ST
Sbjct:   218 GG--STQLVLRHCIREGGHDVPSNKDVTSLDWNSDGTLLATGSYDGFARIWTEDGNLAST 275

Query:   317 LGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTS 376
             LGQHKGPIFALKWNK+GNYILSAGVDKTTIIWDA +G+ +QQF FHSAPALDVDWQ+NT+
Sbjct:   276 LGQHKGPIFALKWNKKGNYILSAGVDKTTIIWDAHTGEAKQQFPFHSAPALDVDWQNNTT 335

Query:   377 FASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKD 436
             FASCSTD  IHVC+L  D+PVK+F+GHTNEVNAIKWDP G+LLASCSDDMTLKIWS+ +D
Sbjct:   336 FASCSTDMCIHVCRLGCDRPVKTFQGHTNEVNAIKWDPSGMLLASCSDDMTLKIWSMKQD 395

Query:   437 NCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLI 469
              CVHDLQAH+KEIYTIKWSPTGP TSNPN S++
Sbjct:   396 TCVHDLQAHSKEIYTIKWSPTGPATSNPNSSIM 428

GO:0006508 "proteolysis" evidence=ISS

GO:0007605 "sensory perception of sound" evidence=ISS

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=ISS

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=ISS

GO:0060070 "canonical Wnt receptor signaling pathway" evidence=ISS

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=ISS

GO:0003714 "transcription corepressor activity" evidence=ISS

GO:0008013 "beta-catenin binding" evidence=ISS

GO:0042393 "histone binding" evidence=ISS

GO:0005876 "spindle microtubule" evidence=ISS

GO:0017053 "transcriptional repressor complex" evidence=ISS

GO:0045444 "fat cell differentiation" evidence=IEA

GO:0044212 "transcription regulatory region DNA binding" evidence=IEA

GO:0043627 "response to estrogen stimulus" evidence=IEA

GO:0043161 "proteasomal ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0005667 "transcription factor complex" evidence=IEA

GO:0003682 "chromatin binding" evidence=IEA

UNIPROTKB|O60907 TBL1X "F-box-like/WD repeat-containing protein TBL1X" [Homo sapiens (taxid:9606)]

 Score = 1147 (408.8 bits), Expect = 5.0e-153, Sum P(2) = 5.0e-153
 Identities = 204/273 (74%), Positives = 237/273 (86%)

Query:   197 NPPESMEVDASIEIPQSKATKLIGHESEVFICAWNPVKDFLASGSGDSTARIWDMTDSTK 256
             N  + ME+D  +EIP SKAT L GHESEVFICAWNPV D LASGSGDSTARIW++ +++ 
Sbjct:   207 NHAKPMEIDGEVEIPSSKATVLRGHESEVFICAWNPVSDLLASGSGDSTARIWNLNENSN 266

Query:   257 KDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFLATGSYDGYARIWTSDGSLKST 316
                   Q+VLRHCI +GG +VPSNKDVTSLDWN NG+ LATGSYDG+ARIWT DG+L ST
Sbjct:   267 GG--STQLVLRHCIREGGHDVPSNKDVTSLDWNTNGTLLATGSYDGFARIWTEDGNLAST 324

Query:   317 LGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTS 376
             LGQHKGPIFALKWN++GNYILSAGVDKTTIIWDA +G+ +QQF FHSAPALDVDWQ+NT+
Sbjct:   325 LGQHKGPIFALKWNRKGNYILSAGVDKTTIIWDAHTGEAKQQFPFHSAPALDVDWQNNTT 384

Query:   377 FASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKD 436
             FASCSTD  IHVC+L  D+PVK+F+GHTNEVNAIKWDP G+LLASCSDDMTLKIWS+ ++
Sbjct:   385 FASCSTDMCIHVCRLGCDRPVKTFQGHTNEVNAIKWDPSGMLLASCSDDMTLKIWSMKQE 444

Query:   437 NCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLI 469
              C+HDLQAHNKEIYTIKWSPTGP TSNPN +++
Sbjct:   445 VCIHDLQAHNKEIYTIKWSPTGPATSNPNSNIM 477

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0060070 "canonical Wnt receptor signaling pathway" evidence=IMP

GO:0003714 "transcription corepressor activity" evidence=IGI;IDA

GO:0042393 "histone binding" evidence=IDA

GO:0017053 "transcriptional repressor complex" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0006508 "proteolysis" evidence=IMP

GO:0008022 "protein C-terminus binding" evidence=IPI

GO:0005876 "spindle microtubule" evidence=IDA

GO:0000118 "histone deacetylase complex" evidence=IDA

GO:0019904 "protein domain specific binding" evidence=IPI

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IDA

GO:0007605 "sensory perception of sound" evidence=IMP

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IDA

GO:0008013 "beta-catenin binding" evidence=IPI

GO:0008134 "transcription factor binding" evidence=IPI

GO:0044212 "transcription regulatory region DNA binding" evidence=IDA

GO:0043161 "proteasomal ubiquitin-dependent protein catabolic process" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

GO:0005654 "nucleoplasm" evidence=TAS

GO:0007219 "Notch signaling pathway" evidence=TAS

GO:0044255 "cellular lipid metabolic process" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

MGI|MGI:1336172 Tbl1x "transducin (beta)-like 1 X-linked" [Mus musculus (taxid:10090)]

 Score = 1146 (408.5 bits), Expect = 8.1e-153, Sum P(2) = 8.1e-153
 Identities = 205/273 (75%), Positives = 238/273 (87%)

Query:   197 NPPESMEVDASIEIPQSKATKLIGHESEVFICAWNPVKDFLASGSGDSTARIWDMTDSTK 256
             N  + ME+D  +EIP SKAT L GHESEVFICAWNPV D LASGSGDSTARIW++ +++ 
Sbjct:   157 NHSKPMEIDGDVEIPPSKATVLRGHESEVFICAWNPVSDLLASGSGDSTARIWNLNENSN 216

Query:   257 KDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFLATGSYDGYARIWTSDGSLKST 316
                   Q+VLRHCI +GG +VPSNKDVTSLDWN++G+ LATGSYDG+ARIWT DG+L ST
Sbjct:   217 GG--STQLVLRHCIREGGHDVPSNKDVTSLDWNSDGTLLATGSYDGFARIWTEDGNLAST 274

Query:   317 LGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTS 376
             LGQHKGPIFALKWNK+GNYILSAGVDKTTIIWDA +G+ +QQF FHSAPALDVDWQ+NT+
Sbjct:   275 LGQHKGPIFALKWNKKGNYILSAGVDKTTIIWDAHTGEAKQQFPFHSAPALDVDWQNNTT 334

Query:   377 FASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKD 436
             FASCSTD  IHVC+L  D+PVK+F+GHTNEVNAIKWDP G+LLASCSDDMTLKIWS+ +D
Sbjct:   335 FASCSTDMCIHVCRLGCDRPVKTFQGHTNEVNAIKWDPSGMLLASCSDDMTLKIWSMKQD 394

Query:   437 NCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLI 469
              CVHDLQAH+KEIYTIKWSPTGP TSNPN +++
Sbjct:   395 ACVHDLQAHSKEIYTIKWSPTGPATSNPNSNIM 427

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=ISO

GO:0003677 "DNA binding" evidence=IDA

GO:0003682 "chromatin binding" evidence=IDA

GO:0003714 "transcription corepressor activity" evidence=ISO;IMP

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=ISO

GO:0005667 "transcription factor complex" evidence=IDA

GO:0005876 "spindle microtubule" evidence=ISO

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=IGI

GO:0006508 "proteolysis" evidence=ISO

GO:0007605 "sensory perception of sound" evidence=ISO

GO:0008013 "beta-catenin binding" evidence=ISO

GO:0008022 "protein C-terminus binding" evidence=ISO

GO:0008134 "transcription factor binding" evidence=ISO

GO:0017053 "transcriptional repressor complex" evidence=ISO

GO:0019904 "protein domain specific binding" evidence=ISO

GO:0042393 "histone binding" evidence=ISO

GO:0043161 "proteasomal ubiquitin-dependent protein catabolic process" evidence=IMP

GO:0043627 "response to estrogen stimulus" evidence=IMP

GO:0044212 "transcription regulatory region DNA binding" evidence=ISO;IDA

GO:0045444 "fat cell differentiation" evidence=IMP

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IMP

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=ISO

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=ISO;IMP

GO:0048545 "response to steroid hormone stimulus" evidence=IMP

GO:0060070 "canonical Wnt receptor signaling pathway" evidence=ISO

RGD|1563868 Tbl1x "transducin (beta)-like 1 X-linked" [Rattus norvegicus (taxid:10116)]

 Score = 1146 (408.5 bits), Expect = 8.1e-153, Sum P(2) = 8.1e-153
 Identities = 205/273 (75%), Positives = 238/273 (87%)

Query:   197 NPPESMEVDASIEIPQSKATKLIGHESEVFICAWNPVKDFLASGSGDSTARIWDMTDSTK 256
             N  + ME+D  +EIP SKAT L GHESEVFICAWNPV D LASGSGDSTARIW++ +++ 
Sbjct:   157 NHSKPMEIDGDVEIPPSKATVLRGHESEVFICAWNPVSDLLASGSGDSTARIWNLNENSN 216

Query:   257 KDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFLATGSYDGYARIWTSDGSLKST 316
                   Q+VLRHCI +GG +VPSNKDVTSLDWN++G+ LATGSYDG+ARIWT DG+L ST
Sbjct:   217 GG--STQLVLRHCIREGGHDVPSNKDVTSLDWNSDGTLLATGSYDGFARIWTEDGNLAST 274

Query:   317 LGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTS 376
             LGQHKGPIFALKWNK+GNYILSAGVDKTTIIWDA +G+ +QQF FHSAPALDVDWQ+NT+
Sbjct:   275 LGQHKGPIFALKWNKKGNYILSAGVDKTTIIWDAHTGEAKQQFPFHSAPALDVDWQNNTT 334

Query:   377 FASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKD 436
             FASCSTD  IHVC+L  D+PVK+F+GHTNEVNAIKWDP G+LLASCSDDMTLKIWS+ +D
Sbjct:   335 FASCSTDMCIHVCRLGCDRPVKTFQGHTNEVNAIKWDPSGMLLASCSDDMTLKIWSMKQD 394

Query:   437 NCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLI 469
              CVHDLQAH+KEIYTIKWSPTGP TSNPN +++
Sbjct:   395 ACVHDLQAHSKEIYTIKWSPTGPATSNPNSNIM 427

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=ISO

GO:0003674 "molecular_function" evidence=ND

GO:0003677 "DNA binding" evidence=ISO

GO:0003682 "chromatin binding" evidence=IEA;ISO

GO:0003714 "transcription corepressor activity" evidence=IEA;ISO

GO:0005575 "cellular_component" evidence=ND

GO:0005634 "nucleus" evidence=ISO

GO:0005667 "transcription factor complex" evidence=IEA;ISO

GO:0005876 "spindle microtubule" evidence=ISO

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=ISO

GO:0006508 "proteolysis" evidence=ISO

GO:0007605 "sensory perception of sound" evidence=ISO

GO:0008013 "beta-catenin binding" evidence=ISO

GO:0008022 "protein C-terminus binding" evidence=ISO

GO:0008134 "transcription factor binding" evidence=ISO

GO:0008150 "biological_process" evidence=ND

GO:0017053 "transcriptional repressor complex" evidence=ISO

GO:0019904 "protein domain specific binding" evidence=ISO

GO:0042393 "histone binding" evidence=ISO

GO:0043161 "proteasomal ubiquitin-dependent protein catabolic process" evidence=IEA;ISO

GO:0043627 "response to estrogen stimulus" evidence=IEA;ISO

GO:0044212 "transcription regulatory region DNA binding" evidence=IEA;ISO

GO:0045444 "fat cell differentiation" evidence=IEA;ISO

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IEA;ISO

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=ISO

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IEA;ISO

GO:0048545 "response to steroid hormone stimulus" evidence=ISO

GO:0060070 "canonical Wnt receptor signaling pathway" evidence=ISO

GO:0000118 "histone deacetylase complex" evidence=ISO

UNIPROTKB|B8YE10 TBL1Y "Transducin (Beta)-like 1Y-linked" [Macaca mulatta (taxid:9544)]

 Score = 1136 (405.0 bits), Expect = 2.5e-151, Sum P(2) = 2.5e-151
 Identities = 203/273 (74%), Positives = 237/273 (86%)

Query:   197 NPPESMEVDASIEIPQSKATKLIGHESEVFICAWNPVKDFLASGSGDSTARIWDMTDSTK 256
             N  + ME+D  +EIP +KAT L GHESEVFICAWNPV D LASGSGDSTARIW++ ++  
Sbjct:   150 NHSKPMEIDGDVEIPPNKATVLRGHESEVFICAWNPVSDLLASGSGDSTARIWNLNENGS 209

Query:   257 KDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFLATGSYDGYARIWTSDGSLKST 316
             +     Q+VLRHCI +GG +VPSNKDVTSLDWN++G+ LATGSYDG+ARIWT +G+L ST
Sbjct:   210 R--ASTQLVLRHCIREGGHDVPSNKDVTSLDWNSDGTLLATGSYDGFARIWTENGNLAST 267

Query:   317 LGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTS 376
             LGQHKGPIFALKWNK+GNYILSAGVDKTTIIWDA +G+ +QQF FHSAPALDVDWQ+NT+
Sbjct:   268 LGQHKGPIFALKWNKKGNYILSAGVDKTTIIWDAHTGEAKQQFPFHSAPALDVDWQNNTT 327

Query:   377 FASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKD 436
             FASCSTD  IHVC+L  D+PVK+F+GHTNEVNAIKWDP G+LLASCSDDMTLKIWS+ +D
Sbjct:   328 FASCSTDMCIHVCRLGCDRPVKTFQGHTNEVNAIKWDPSGMLLASCSDDMTLKIWSMKQD 387

Query:   437 NCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLI 469
              CVH+LQAH KEIYTIKWSPTGP TSNPN S++
Sbjct:   388 ACVHNLQAHRKEIYTIKWSPTGPTTSNPNSSIM 420

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=ISS

GO:0003714 "transcription corepressor activity" evidence=ISS

GO:0005876 "spindle microtubule" evidence=ISS

GO:0006508 "proteolysis" evidence=ISS

GO:0007605 "sensory perception of sound" evidence=ISS

GO:0008013 "beta-catenin binding" evidence=ISS

GO:0017053 "transcriptional repressor complex" evidence=ISS

GO:0042393 "histone binding" evidence=ISS

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=ISS

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=ISS

GO:0060070 "canonical Wnt receptor signaling pathway" evidence=ISS

UNIPROTKB|C3UJQ7 TBL1Y "Transducin (Beta)-like 1 Y-linked" [Gorilla gorilla (taxid:9593)]

 Score = 1118 (398.6 bits), Expect = 5.8e-150, Sum P(2) = 5.8e-150
 Identities = 201/273 (73%), Positives = 234/273 (85%)

Query:   197 NPPESMEVDASIEIPQSKATKLIGHESEVFICAWNPVKDFLASGSGDSTARIWDMTDSTK 256
             N  + ME+D  +EIP +KAT L GHESEVFICAWNPV D LASGSGDSTARIW++ +++ 
Sbjct:   154 NHSKPMEIDRDVEIPPNKATVLRGHESEVFICAWNPVSDLLASGSGDSTARIWNLNENSN 213

Query:   257 KDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFLATGSYDGYARIWTSDGSLKST 316
                   Q+VLRHCI +G  +VPSNKDVTSLDWN++G+ LA GSYDG+ARIWT +G+L ST
Sbjct:   214 GG--STQLVLRHCIREGWHDVPSNKDVTSLDWNSDGTLLAMGSYDGFARIWTENGNLAST 271

Query:   317 LGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTS 376
             LGQHKGPIFALKWNK+GNYILSAGVDKTTIIWDA +G+ +QQF FHSAPALDVDWQ+NT+
Sbjct:   272 LGQHKGPIFALKWNKKGNYILSAGVDKTTIIWDAHTGEAKQQFPFHSAPALDVDWQNNTT 331

Query:   377 FASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKD 436
             FASC TD  IHVC+L  D PVK+F+GHTNEVNAIKWDP G+LLASCSDDMTLKIWS+ +D
Sbjct:   332 FASCGTDMCIHVCRLGCDLPVKTFQGHTNEVNAIKWDPSGMLLASCSDDMTLKIWSMKQD 391

Query:   437 NCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLI 469
              CVHDLQAH+KEIYTIKWSPTGP TSNPN S++
Sbjct:   392 ACVHDLQAHSKEIYTIKWSPTGPATSNPNSSIM 424

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=ISS

GO:0003714 "transcription corepressor activity" evidence=ISS

GO:0005876 "spindle microtubule" evidence=ISS

GO:0006508 "proteolysis" evidence=ISS

GO:0007605 "sensory perception of sound" evidence=ISS

GO:0008013 "beta-catenin binding" evidence=ISS

GO:0017053 "transcriptional repressor complex" evidence=ISS

GO:0042393 "histone binding" evidence=ISS

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=ISS

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=ISS

GO:0060070 "canonical Wnt receptor signaling pathway" evidence=ISS

UNIPROTKB|Q9BQ87 TBL1Y "F-box-like/WD repeat-containing protein TBL1Y" [Homo sapiens (taxid:9606)]

 Score = 1125 (401.1 bits), Expect = 1.5e-149, Sum P(2) = 1.5e-149
 Identities = 201/273 (73%), Positives = 235/273 (86%)

Query:   197 NPPESMEVDASIEIPQSKATKLIGHESEVFICAWNPVKDFLASGSGDSTARIWDMTDSTK 256
             N  + ME+D  +EIP +KAT L GHESEVFICAWNPV D LASGSGDSTARIW++ +++ 
Sbjct:   154 NHSKPMEIDGDVEIPPNKATVLRGHESEVFICAWNPVSDLLASGSGDSTARIWNLNENSN 213

Query:   257 KDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFLATGSYDGYARIWTSDGSLKST 316
                   Q+VLRHCI +GG +VPSNKDVTSLDWN++G+ LA GSYDG+ARIWT +G+L ST
Sbjct:   214 GG--STQLVLRHCIREGGHDVPSNKDVTSLDWNSDGTLLAMGSYDGFARIWTENGNLAST 271

Query:   317 LGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTS 376
             LGQHKGPIFALKWNK+GNY+LSAGVDKTTIIWDA +G+ +QQF FHSAPALDVDWQ+N +
Sbjct:   272 LGQHKGPIFALKWNKKGNYVLSAGVDKTTIIWDAHTGEAKQQFPFHSAPALDVDWQNNMT 331

Query:   377 FASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKD 436
             FASCSTD  IHVC+L  D PVK+F+GHTNEVNAIKWDP G+LLASCSDDMTLKIWS+ +D
Sbjct:   332 FASCSTDMCIHVCRLGCDHPVKTFQGHTNEVNAIKWDPSGMLLASCSDDMTLKIWSMKQD 391

Query:   437 NCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLI 469
              CVHDLQAH+KEIYTIKWSPTGP TSNPN S++
Sbjct:   392 ACVHDLQAHSKEIYTIKWSPTGPATSNPNSSIM 424

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

ZFIN|ZDB-GENE-040426-1192 tbl1xr1 "transducin (beta)-like 1 X-linked receptor 1" [Danio rerio (taxid:7955)]

 Score = 1127 (401.8 bits), Expect = 4.6e-135, Sum P(2) = 4.6e-135
 Identities = 202/270 (74%), Positives = 235/270 (87%)

Query:   200 ESMEVDASIEIPQSKATKLIGHESEVFICAWNPVKDFLASGSGDSTARIWDMTDSTKKDP 259
             + MEVD ++EIP SKA  L GHESEVFICAWNPV D LASGSGDSTARIW++++S+    
Sbjct:   143 DMMEVDRAVEIPASKAMVLRGHESEVFICAWNPVSDLLASGSGDSTARIWNLSESSTGG- 201

Query:   260 KELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFLATGSYDGYARIWTSDGSLKSTLGQ 319
                Q+VLRHCI +GG +VPSNKDVTSLDWN+ G+ LATGSYDG+ARIWT DG+L STLGQ
Sbjct:   202 -STQLVLRHCIREGGQDVPSNKDVTSLDWNSEGTLLATGSYDGFARIWTKDGNLASTLGQ 260

Query:   320 HKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTSFAS 379
             HKGPIFALKWNK+GN+ILSAGVDKTTIIWDA +G+ +QQF FHSAPALDVDWQSN +FAS
Sbjct:   261 HKGPIFALKWNKKGNFILSAGVDKTTIIWDAHTGEAKQQFPFHSAPALDVDWQSNNTFAS 320

Query:   380 CSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCV 439
             CSTD  IHVCKL  ++P+K+F+GHTNEVNAIKWDP G LLASCSDDMTLK+WS+ +D CV
Sbjct:   321 CSTDMCIHVCKLGQERPIKTFQGHTNEVNAIKWDPTGNLLASCSDDMTLKLWSMKQDTCV 380

Query:   440 HDLQAHNKEIYTIKWSPTGPETSNPNMSLI 469
             HDLQAH+KEIYTIKWSPTGP T+NPN +L+
Sbjct:   381 HDLQAHSKEIYTIKWSPTGPGTNNPNANLM 410

GO:0003674 "molecular_function" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8BHJ5	TBL1R_MOUSE	No assigned EC number	0.6277	0.6029	0.7062	yes	N/A
O60907	TBL1X_HUMAN	No assigned EC number	0.6253	0.6029	0.6291	yes	N/A
Q95RJ9	EBI_DROME	No assigned EC number	0.6466	0.5946	0.5114	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	602
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	2e-62
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	7e-61
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	2e-56
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	3e-47
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	3e-35
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	3e-34
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	1e-20
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	7e-18
smart00320	40	smart00320, WD40, WD40 repeats	2e-10
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	8e-10
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	4e-09
smart00320	40	smart00320, WD40, WD40 repeats	5e-09
PTZ00420	568	PTZ00420, PTZ00420, coronin; Provisional	2e-08
pfam08513	27	pfam08513, LisH, LisH	3e-08
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	7e-06
smart00320	40	smart00320, WD40, WD40 repeats	9e-06
smart00667	34	smart00667, LisH, Lissencephaly type-1-like homolo	1e-05
smart00320	40	smart00320, WD40, WD40 repeats	2e-05
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	3e-05
PTZ00420	568	PTZ00420, PTZ00420, coronin; Provisional	3e-05
smart00320	40	smart00320, WD40, WD40 repeats	4e-05
PTZ00420	568	PTZ00420, PTZ00420, coronin; Provisional	6e-05
PTZ00421	493	PTZ00421, PTZ00421, coronin; Provisional	7e-05
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	8e-05
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	9e-05
smart00320	40	smart00320, WD40, WD40 repeats	1e-04
pfam08662	194	pfam08662, eIF2A, Eukaryotic translation initiatio	2e-04
PLN00181	793	PLN00181, PLN00181, protein SPA1-RELATED; Provisio	3e-04
PTZ00421	493	PTZ00421, PTZ00421, coronin; Provisional	4e-04
PLN00181	793	PLN00181, PLN00181, protein SPA1-RELATED; Provisio	0.001
PTZ00421	493	PTZ00421, PTZ00421, coronin; Provisional	0.002

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  207 bits (529), Expect = 2e-62
 Identities = 91/331 (27%), Positives = 141/331 (42%), Gaps = 53/331 (16%)

Query: 220 GHESEVFICAWNPVKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPS 279
           GH   V   A++P    LA+GSGD T ++WD+      +  EL   L     KG T    
Sbjct: 7   GHTGGVTCVAFSPDGKLLATGSGDGTIKVWDL------ETGELLRTL-----KGHT---- 51

Query: 280 NKDVTSLDWNNNGSFLATGSYDGYARIW-TSDGSLKSTLGQHKGPIFALKWNKRGNYILS 338
              V  +  + +G++LA+GS D   R+W    G    TL  H   + ++ ++  G  + S
Sbjct: 52  -GPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSS 110

Query: 339 AGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTSF-ASCSTDQHIHVCKLHSDKPV 397
           +  DKT  +WD  +G+C      H+     V +  + +F AS S D  I +  L + K V
Sbjct: 111 SSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCV 170

Query: 398 KSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHDLQAHNKEIYTIKWSPT 457
            +  GHT EVN++ + P G  L S S D T+K+W L    C+  L+ H   + ++ +SP 
Sbjct: 171 ATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPD 230

Query: 458 GPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQ 517
           G                                    + S   D T  +WD  +G+C Q 
Sbjct: 231 G----------------------------------YLLASGSEDGTIRVWDLRTGECVQT 256

Query: 518 FSFHSAPALDVDWQSNTS-FASCSTDQHIHV 547
            S H+     + W  +    AS S D  I +
Sbjct: 257 LSGHTNSVTSLAWSPDGKRLASGSADGTIRI 287

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  203 bits (519), Expect = 7e-61
 Identities = 95/379 (25%), Positives = 150/379 (39%), Gaps = 92/379 (24%)

Query: 132 CLNTLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKGTGGIFEVCWNS 191
              TL  HT  V  VAFSPDGK LA+GS D  + +W   TG+L+ + KG           
Sbjct: 1   LRRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKG----------- 49

Query: 192 RGTPPNPPESMEVDASIEIPQSKATKLIGHESEVFICAWNPVKDFLASGSGDSTARIWDM 251
                                        H   V   A +    +LASGS D T R+WD+
Sbjct: 50  -----------------------------HTGPVRDVAASADGTYLASGSSDKTIRLWDL 80

Query: 252 TDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFLATGSYDGYARIW-TSD 310
                +  + ++ +  H              V+S+ ++ +G  L++ S D   ++W    
Sbjct: 81  -----ETGECVRTLTGHT-----------SYVSSVAFSPDGRILSSSSRDKTIKVWDVET 124

Query: 311 GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVD 370
           G   +TL  H   + ++ ++  G ++ S+  D T  +WD  +G+C    + H+     V 
Sbjct: 125 GKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVA 184

Query: 371 W-QSNTSFASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLK 429
           +        S S+D  I +  L + K + +  GH N VN++ + P G LLAS S+D T++
Sbjct: 185 FSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIR 244

Query: 430 IWSLDKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWN 489
           +W L    CV  L  H   + ++ WSP G                               
Sbjct: 245 VWDLRTGECVQTLSGHTNSVTSLAWSPDG------------------------------- 273

Query: 490 KRGNYILSAGVDKTTIIWD 508
                + S   D T  IWD
Sbjct: 274 ---KRLASGSADGTIRIWD 289

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  192 bits (489), Expect = 2e-56
 Identities = 93/314 (29%), Positives = 139/314 (44%), Gaps = 58/314 (18%)

Query: 121 TLPLWDVERGECLNTLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKG 180
           T+ +WD+E GE L TL  HT PV  VA S DG +LASGS DK + +W   TG+ V +  G
Sbjct: 32  TIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTG 91

Query: 181 TGGIFEVCWNSRGTPPNPPESMEVDASIEIPQSKATKLIGHESEVFICAWNPVKDFLASG 240
                                                   H S V   A++P    L+S 
Sbjct: 92  ----------------------------------------HTSYVSSVAFSPDGRILSSS 111

Query: 241 SGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFLATGSY 300
           S D T ++WD+         +    LR               V S+ ++ +G+F+A+ S 
Sbjct: 112 SRDKTIKVWDVET------GKCLTTLRGH----------TDWVNSVAFSPDGTFVASSSQ 155

Query: 301 DGYARIW-TSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQF 359
           DG  ++W    G   +TL  H G + ++ ++  G  +LS+  D T  +WD ++G+C    
Sbjct: 156 DGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTL 215

Query: 360 SFHSAPALDVDWQSNTS-FASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLL 418
             H      V +  +    AS S D  I V  L + + V++  GHTN V ++ W P G  
Sbjct: 216 RGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKR 275

Query: 419 LASCSDDMTLKIWS 432
           LAS S D T++IW 
Sbjct: 276 LASGSADGTIRIWD 289

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  167 bits (424), Expect = 3e-47
 Identities = 73/296 (24%), Positives = 144/296 (48%), Gaps = 21/296 (7%)

Query: 313 LKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQ 372
           L+ TL  H G +  + ++  G  + +   D T  +WD  +G+  +    H+ P  DV   
Sbjct: 1   LRRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAAS 60

Query: 373 SN-TSFASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIW 431
           ++ T  AS S+D+ I +  L + + V++  GHT+ V+++ + P G +L+S S D T+K+W
Sbjct: 61  ADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVW 120

Query: 432 SLDKDNCVHDLQAHNKEIYTIKWSPTGP--ETSNPNMSLIFI------LKSTLGQHKGPI 483
            ++   C+  L+ H   + ++ +SP G    +S+ + ++           +TL  H G +
Sbjct: 121 DVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEV 180

Query: 484 FALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTS-FASCSTD 542
            ++ ++  G  +LS+  D T  +WD ++G+C      H      V +  +    AS S D
Sbjct: 181 NSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSED 240

Query: 543 QHIHVCKLHSDKPVKSFEGHTTGQLVHSYKGTGGIFEVCWNSRGDKVGASASDGSV 598
             I V  L + + V++  GH           T  +  + W+  G ++ + ++DG++
Sbjct: 241 GTIRVWDLRTGECVQTLSGH-----------TNSVTSLAWSPDGKRLASGSADGTI 285

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score =  138 bits (348), Expect = 3e-35
 Identities = 100/366 (27%), Positives = 174/366 (47%), Gaps = 33/366 (9%)

Query: 83  DAVLPDFVANRQNQLNSQRTNNPSTGPAITNGEEVHRLTLPLWDVE-RGECLNTLTRHTE 141
           + ++        + ++    ++P     +     +   T+ LWD+   G+ + TL  H+E
Sbjct: 98  EKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDG-TVKLWDLSTPGKLIRTLEGHSE 156

Query: 142 PVYSVAFSPDGKFLASGS-FDKCVHIWSARTGQLVHSYKG-TGGIFEVCWNSRGTPPNPP 199
            V S+AFSPDGK LASGS  D  + +W  RTG+ + +  G T  +  + ++  G      
Sbjct: 157 SVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIAS 216

Query: 200 ESMEVDASIEI-----PQSKATKLIGHESEVFICAWNPVKDFLASGSGDSTARIWDMTDS 254
            S   D +I +      +   + L GH   V + +++P    LASGS D T R+WD    
Sbjct: 217 GSS--DGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWD---- 269

Query: 255 TKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFLATGSYDGYARIWTSDGSLK 314
            +     L+ +  H           +  V S+ ++ +G  LA+GS DG  R+W  +    
Sbjct: 270 LRSSSSLLRTLSGH-----------SSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKL 318

Query: 315 S---TLGQHKGPIFALKWNKRGNYILSAGV-DKTTIIWDAASGQCEQQFSFHSAPALDVD 370
               TL  H+GP+ +L ++  G+ ++S G  D T  +WD  +G+  +    HS   L V 
Sbjct: 319 LSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHS-NVLSVS 377

Query: 371 WQSNT-SFASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLK 429
           +  +    +S STD  + +  L +   +++ +GHT+ V ++ + P G  LAS S D T++
Sbjct: 378 FSPDGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIR 437

Query: 430 IWSLDK 435
           +W L  
Sbjct: 438 LWDLKT 443

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score =  135 bits (340), Expect = 3e-34
 Identities = 105/410 (25%), Positives = 182/410 (44%), Gaps = 43/410 (10%)

Query: 135 TLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQ-LVHSYKG--TGGIFEVCWNS 191
            L  H + + S+AFSPDG+ L SGS D  + +W    G+ L+ S +G     + ++  +S
Sbjct: 60  LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSS 119

Query: 192 RGTPPNPPESMEVDASIEI-----PQSKATKLIGHESEVFICAWNPVKDFLASGSG-DST 245
                    S  +D ++++     P      L GH   V   A++P    LASGS  D T
Sbjct: 120 PDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGT 179

Query: 246 ARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSF-LATGSYDGYA 304
            ++WD+     +  K L  +  H              V+SL ++ +G   +A+GS DG  
Sbjct: 180 IKLWDL-----RTGKPLSTLAGH-----------TDPVSSLAFSPDGGLLIASGSSDGTI 223

Query: 305 RIW--TSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASG-QCEQQFSF 361
           R+W  ++   L+STL  H   + +  ++  G+ + S   D T  +WD  S     +  S 
Sbjct: 224 RLWDLSTGKLLRSTLSGHSDSVVSS-FSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSG 282

Query: 362 HSAPALDVDWQSNTS-FASCSTDQHIHVCKL--HSDKPVKSFEGHTNEVNAIKWDPQG-L 417
           HS+  L V +  +    AS S+D  + +  L         + +GH   V+++ + P G L
Sbjct: 283 HSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSL 342

Query: 418 LLASCSDDMTLKIWSLDKDNCVHDLQAHNKEIYTIKWSPTGPE-TSNPNMSLIFI----- 471
           L++  SDD T+++W L     +  L+ H+  + ++ +SP G   +S      + +     
Sbjct: 343 LVSGGSDDGTIRLWDLRTGKPLKTLEGHS-NVLSVSFSPDGRVVSSGSTDGTVRLWDLST 401

Query: 472 --LKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFS 519
             L   L  H   + +L ++  G  + S   D T  +WD  +      FS
Sbjct: 402 GSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLKTSLKSVSFS 451

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 95.2 bits (235), Expect = 1e-20
 Identities = 65/295 (22%), Positives = 113/295 (38%), Gaps = 54/295 (18%)

Query: 314 KSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCE--QQFSFHSAPALDVDW 371
              L  H+  I ++ ++  G  +LS   D T  +WD  +G+         H +    +  
Sbjct: 58  SLLLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLAL 117

Query: 372 QSNTS----FASCSTDQHIHVCKLHSD-KPVKSFEGHTNEVNAIKWDPQGLLLASCSD-D 425
            S        AS S D  + +  L +  K +++ EGH+  V ++ + P G LLAS S  D
Sbjct: 118 SSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLD 177

Query: 426 MTLKIWSLDKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFA 485
            T+K+W L     +  L  H   + ++ +SP G                           
Sbjct: 178 GTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGG-------------------------- 211

Query: 486 LKWNKRGNYILSAGVDKTTIIWDAASGQCEQQ-FSFHSAPALDVDWQSNTSFASCSTDQH 544
                    I S   D T  +WD ++G+  +   S HS   +       +  AS S+D  
Sbjct: 212 -------LLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSSFSPDGSLLASGSSDGT 264

Query: 545 IHVCKLHSD-KPVKSFEGHTTGQLVHSYKGTGGIFEVCWNSRGDKVGASASDGSV 598
           I +  L S    +++  GH+             +  V ++  G  + + +SDG+V
Sbjct: 265 IRLWDLRSSSSLLRTLSGHS-----------SSVLSVAFSPDGKLLASGSSDGTV 308

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 86.3 bits (212), Expect = 7e-18
 Identities = 70/243 (28%), Positives = 98/243 (40%), Gaps = 58/243 (23%)

Query: 121 TLPLWDVERG-ECLNTLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYK 179
           T+ LWD+      L TL+ H+  V SVAFSPDGK LASGS D  V +W   TG+L+ S  
Sbjct: 264 TIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSS-- 321

Query: 180 GTGGIFEVCWNSRGTPPNPPESMEVDASIEIPQSKATKLIGHESEVFICAWNPVKDFLAS 239
                                                 L GHE  V   +++P    L S
Sbjct: 322 ------------------------------------LTLKGHEGPVSSLSFSPDGSLLVS 345

Query: 240 G-SGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFLATG 298
           G S D T R+WD+         E                    +V S+ ++ +G  +++G
Sbjct: 346 GGSDDGTIRLWDLRTGKPLKTLEGH-----------------SNVLSVSFSPDGRVVSSG 388

Query: 299 SYDGYARIW-TSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQ 357
           S DG  R+W  S GSL   L  H   + +L ++  G  + S   D T  +WD  +     
Sbjct: 389 STDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLKTSLKSV 448

Query: 358 QFS 360
            FS
Sbjct: 449 SFS 451

Length = 466

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 55.8 bits (135), Expect = 2e-10
 Identities = 25/39 (64%), Positives = 28/39 (71%)

Query: 130 GECLNTLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWS 168
           GE L TL  HT PV SVAFSPDGK+LASGS D  + +W 
Sbjct: 2   GELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 53.9 bits (130), Expect = 8e-10
 Identities = 24/39 (61%), Positives = 26/39 (66%)

Query: 130 GECLNTLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWS 168
           G+ L TL  HT PV SVAFSPDG  LASGS D  V +W 
Sbjct: 1   GKLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 52.0 bits (125), Expect = 4e-09
 Identities = 16/38 (42%), Positives = 26/38 (68%)

Query: 395 KPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWS 432
           K +++ +GHT  V ++ + P G LLAS SDD T+++W 
Sbjct: 2   KLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 51.9 bits (125), Expect = 5e-09
 Identities = 17/40 (42%), Positives = 26/40 (65%)

Query: 393 SDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWS 432
           S + +K+ +GHT  V ++ + P G  LAS SDD T+K+W 
Sbjct: 1   SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|240412 PTZ00420, PTZ00420, coronin; Provisional

 Score = 56.9 bits (137), Expect = 2e-08
 Identities = 44/151 (29%), Positives = 68/151 (45%), Gaps = 14/151 (9%)

Query: 217 KLIGHESEVFICAWNPV-KDFLASGSGDSTARIWDM--TDSTKKDPKELQIVLRHCISKG 273
           KL GH S +    +NP   + LASGS D T R+W++   D + K+ K+ Q     CI KG
Sbjct: 69  KLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQ-----CILKG 123

Query: 274 GTEVPSNKDVTSLDWNN-NGSFLATGSYDGYARIWTSDGSLKSTLGQHKGPIFALKWNKR 332
                  K ++ +DWN  N   + +  +D +  IW  +   ++        + +LKWN +
Sbjct: 124 -----HKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQINMPKKLSSLKWNIK 178

Query: 333 GNYILSAGVDKTTIIWDAASGQCEQQFSFHS 363
           GN +    V K   I D    +    F  H 
Sbjct: 179 GNLLSGTCVGKHMHIIDPRKQEIASSFHIHD 209

Length = 568

>gnl|CDD|149534 pfam08513, LisH, LisH

 Score = 49.2 bits (119), Expect = 3e-08
 Identities = 12/27 (44%), Positives = 19/27 (70%)

Query: 6  DEVNFLVYRYLQESGFQHSAYTFGIES 32
          +E+N L+Y YL +SG++ +A  F  ES
Sbjct: 1  EELNRLIYDYLVKSGYKETAEAFAKES 27

The LisH (lis homology) domain mediates protein dimerisation and tetramerisation. The LisH domain is found in Sif2, a component of the Set3 complex which is responsible for repressing meiotic genes. It has been shown that the LisH domain helps mediate interaction with components of the Set3 complex. Length = 27

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 42.7 bits (101), Expect = 7e-06
 Identities = 16/35 (45%), Positives = 20/35 (57%)

Query: 216 TKLIGHESEVFICAWNPVKDFLASGSGDSTARIWD 250
             L GH   V   A++P  + LASGS D T R+WD
Sbjct: 5   RTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 42.7 bits (101), Expect = 9e-06
 Identities = 14/40 (35%), Positives = 21/40 (52%)

Query: 310 DGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWD 349
            G L  TL  H GP+ ++ ++  G Y+ S   D T  +WD
Sbjct: 1   SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|128913 smart00667, LisH, Lissencephaly type-1-like homology motif

 Score = 42.0 bits (100), Expect = 1e-05
 Identities = 12/33 (36%), Positives = 19/33 (57%)

Query: 4  SSDEVNFLVYRYLQESGFQHSAYTFGIESHISQ 36
          S  E+N L+  YL  +G++ +A T   ES +S 
Sbjct: 2  SRSELNRLILEYLLRNGYEETAETLQKESGLSL 34

Alpha-helical motif present in Lis1, treacle, Nopp140, some katanin p60 subunits, muskelin, tonneau, LEUNIG and numerous WD40 repeat-containing proteins. It is suggested that LisH motifs contribute to the regulation of microtubule dynamics, either by mediating dimerisation, or else by binding cytoplasmic dynein heavy chain or microtubules directly. Length = 34

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 41.5 bits (98), Expect = 2e-05
 Identities = 15/33 (45%), Positives = 20/33 (60%)

Query: 218 LIGHESEVFICAWNPVKDFLASGSGDSTARIWD 250
           L GH   V   A++P   +LASGS D T ++WD
Sbjct: 8   LKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 40.8 bits (96), Expect = 3e-05
 Identities = 14/39 (35%), Positives = 21/39 (53%)

Query: 311 GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWD 349
           G L  TL  H GP+ ++ ++  GN + S   D T  +WD
Sbjct: 1   GKLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|240412 PTZ00420, PTZ00420, coronin; Provisional

 Score = 46.9 bits (111), Expect = 3e-05
 Identities = 41/163 (25%), Positives = 66/163 (40%), Gaps = 51/163 (31%)

Query: 136 LTRHTEPVYSVAFSP-DGKFLASGSFDKCVHIWSARTGQLVHSYKGTGGIFEVCWNSRGT 194
           L  HT  +  + F+P   + LASGS D  + +W                           
Sbjct: 70  LKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEI------------------------- 104

Query: 195 PPNPPESMEVDASIEIPQSKATKLIGHESEVFICAWNPVKDFLASGSG-DSTARIWDMTD 253
            P+  ES++    I+ PQ     L GH+ ++ I  WNP+  ++   SG DS   IWD+  
Sbjct: 105 -PHNDESVK---EIKDPQ---CILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDI-- 155

Query: 254 STKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFLA 296
             + + +  QI +              K ++SL WN  G+ L+
Sbjct: 156 --ENEKRAFQINM-------------PKKLSSLKWNIKGNLLS 183

Length = 568

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 40.8 bits (96), Expect = 4e-05
 Identities = 13/37 (35%), Positives = 20/37 (54%)

Query: 472 LKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWD 508
           L  TL  H GP+ ++ ++  G Y+ S   D T  +WD
Sbjct: 4   LLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|240412 PTZ00420, PTZ00420, coronin; Provisional

 Score = 45.7 bits (108), Expect = 6e-05
 Identities = 45/174 (25%), Positives = 77/174 (44%), Gaps = 30/174 (17%)

Query: 396 PVKSFEGHTNEVNAIKWDP-QGLLLASCSDDMTLKIWSLDKDNCVHDLQAHNKEIYTIKW 454
           PV   +GHT+ +  ++++P    +LAS S+D+T+++W +           HN E  ++K 
Sbjct: 66  PVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEI----------PHNDE--SVK- 112

Query: 455 SPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYIL-SAGVDKTTIIWDAASGQ 513
                E  +P      ILK     HK  I  + WN    YI+ S+G D    IWD  + +
Sbjct: 113 -----EIKDPQC----ILKG----HKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEK 159

Query: 514 CEQQFSF-HSAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEGHTTGQ 566
              Q +      +L  + + N    +C   +H+H+      +   SF  H  G+
Sbjct: 160 RAFQINMPKKLSSLKWNIKGNLLSGTC-VGKHMHIIDPRKQEIASSFHIHDGGK 212

Length = 568

>gnl|CDD|173611 PTZ00421, PTZ00421, coronin; Provisional

 Score = 45.3 bits (107), Expect = 7e-05
 Identities = 57/248 (22%), Positives = 91/248 (36%), Gaps = 41/248 (16%)

Query: 218 LIGHESEVFICAWNP-VKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTE 276
           L GH  +V I +++P   + LAS   D    +WD+                         
Sbjct: 121 LQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGK-----------------AVEV 163

Query: 277 VPSNKD-VTSLDWNNNGSFLATGSYDGYARIWT-SDGSLKSTLGQHKGPIFA-LKWNKRG 333
           +  + D +TSL+WN +GS L T S D    I    DG++ S++  H         W KR 
Sbjct: 164 IKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRK 223

Query: 334 NYILSAGVDKT----TIIWDAASGQCEQQFSFHSAPALDVDWQSNTSFASCSTDQHIHVC 389
           + I++ G  K+     ++WD    +    +S      +D+D  S         D ++   
Sbjct: 224 DLIITLGCSKSQQRQIMLWDTR--KMASPYS-----TVDLDQSSALFIPFFDEDTNLLYI 276

Query: 390 KLHSDKPVKSFEGHTNE--VNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHD--LQAH 445
               +  ++ FE   NE       +         C   M  K WSLD   C         
Sbjct: 277 GSKGEGNIRCFE-LMNERLTFCSSYSSVEPHKGLC---MMPK-WSLDTRKCEIARFYALT 331

Query: 446 NKEIYTIK 453
              +YTI+
Sbjct: 332 YHSLYTIQ 339

Length = 493

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 39.6 bits (93), Expect = 8e-05
 Identities = 12/28 (42%), Positives = 19/28 (67%)

Query: 280 NKDVTSLDWNNNGSFLATGSYDGYARIW 307
              VTS+ ++ +G+ LA+GS DG  R+W
Sbjct: 11  TGPVTSVAFSPDGNLLASGSDDGTVRVW 38

Length = 39

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 39.6 bits (93), Expect = 9e-05
 Identities = 13/37 (35%), Positives = 20/37 (54%)

Query: 472 LKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWD 508
           L  TL  H GP+ ++ ++  GN + S   D T  +WD
Sbjct: 3   LLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 39.6 bits (93), Expect = 1e-04
 Identities = 11/28 (39%), Positives = 19/28 (67%)

Query: 280 NKDVTSLDWNNNGSFLATGSYDGYARIW 307
              VTS+ ++ +G +LA+GS DG  ++W
Sbjct: 12  TGPVTSVAFSPDGKYLASGSDDGTIKLW 39

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|149648 pfam08662, eIF2A, Eukaryotic translation initiation factor eIF2A

 Score = 42.2 bits (100), Expect = 2e-04
 Identities = 42/197 (21%), Positives = 72/197 (36%), Gaps = 56/197 (28%)

Query: 410 IKWDPQG---LLLASCSDDMTLK----------IWSLDKDNCVHDLQAHNKEIYTIKWSP 456
           +KW+  G   L+L S   D T K          I      + V +L      I+   WSP
Sbjct: 11  MKWNKNGTYLLVLVSTDVDKTNKSYYGEFNLYLIGETGGPDEVVELDKEG-PIHDFAWSP 69

Query: 457 TGPE-----------TS--NPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAG---- 499
            G E            +  +   ++I  L       + P   + W+  G  +L AG    
Sbjct: 70  NGKEFAVIYGYMPAKITFFDLKGNVIHSLG------EQPRNTIFWSPFGRLVLLAGFGNL 123

Query: 500 ---VDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTS--FASCSTDQHIHVCKLHSDK 554
              ++     WD  +   ++  +  ++ A D +W S     F + +T       +L  D 
Sbjct: 124 AGQIE----FWDVKN--KKKIATAEASNATDCEW-SPDGRYFLTATT-----SPRLRVDN 171

Query: 555 PVKSFEGHTTGQLVHSY 571
             K +  H +G+LV+ Y
Sbjct: 172 GFKIW--HYSGKLVYKY 186

This is a family of eukaryotic translation initiation factors. Length = 194

>gnl|CDD|177776 PLN00181, PLN00181, protein SPA1-RELATED; Provisional

 Score = 43.5 bits (102), Expect = 3e-04
 Identities = 36/164 (21%), Positives = 82/164 (50%), Gaps = 8/164 (4%)

Query: 276 EVPSNKDVTSLDWNNN-GSFLATGSYDGYARIW-TSDGSLKSTLGQHKGPIFALKWNKRG 333
           E+ S   ++ + WN+   S +A+ +++G  ++W  +   L + + +H+  ++++ ++   
Sbjct: 528 ELASRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSAD 587

Query: 334 NYILSAGVDKTTI-IWDAASGQCEQQFSFHSAPALDVDWQSNT--SFASCSTDQHIHVCK 390
             +L++G D  ++ +W    G          A    V + S +  S A  S D  ++   
Sbjct: 588 PTLLASGSDDGSVKLWSINQGVSIGTIK-TKANICCVQFPSESGRSLAFGSADHKVYYYD 646

Query: 391 LHSDK-PVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSL 433
           L + K P+ +  GH+  V+ +++     L++S +D+ TLK+W L
Sbjct: 647 LRNPKLPLCTMIGHSKTVSYVRFVDSSTLVSSSTDN-TLKLWDL 689

Length = 793

>gnl|CDD|173611 PTZ00421, PTZ00421, coronin; Provisional

 Score = 43.0 bits (101), Expect = 4e-04
 Identities = 53/237 (22%), Positives = 88/237 (37%), Gaps = 57/237 (24%)

Query: 341 VDKTTIIWDAASG-QCEQQFSFHSAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKP-VK 398
           V  +T +WD ++   C  +F       + V WQ      S +  +H    KL S+ P + 
Sbjct: 23  VTPSTALWDCSNTIACNDRF-------IAVPWQQ---LGSTAVLKHTDYGKLASNPPILL 72

Query: 399 SFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDK--------DNCVHDLQAHNKEIY 450
             EG   +V    +DPQ L  AS  +D T+  W + +        D  VH LQ H K++ 
Sbjct: 73  GQEGPIIDVAFNPFDPQKLFTAS--EDGTIMGWGIPEEGLTQNISDPIVH-LQGHTKKVG 129

Query: 451 TIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAA 510
            + + P+                                   N + SAG D    +WD  
Sbjct: 130 IVSFHPSA---------------------------------MNVLASAGADMVVNVWDVE 156

Query: 511 SGQCEQQFSFHSAPALDVDWQSNTS-FASCSTDQHIHVCKLHSDKPVKSFEGHTTGQ 566
            G+  +    HS     ++W  + S   + S D+ +++        V S E H + +
Sbjct: 157 RGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAK 213

Length = 493

>gnl|CDD|177776 PLN00181, PLN00181, protein SPA1-RELATED; Provisional

 Score = 42.0 bits (98), Expect = 0.001
 Identities = 37/135 (27%), Positives = 59/135 (43%), Gaps = 5/135 (3%)

Query: 124 LWDVERGECLNTLTRHTEPVYSVAF-SPDGKFLASGSFDKCVHIWSARTGQLVHSYKGTG 182
           +WDV R + +  +  H + V+S+ + S D   LASGS D  V +WS   G  + + K   
Sbjct: 559 VWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTKA 618

Query: 183 GIFEVCWNS---RGTPPNPPESMEVDASIEIPQSKATKLIGHESEVFICAWNPVKDFLAS 239
            I  V + S   R       +       +  P+     +IGH   V    +      L S
Sbjct: 619 NICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFVD-SSTLVS 677

Query: 240 GSGDSTARIWDMTDS 254
            S D+T ++WD++ S
Sbjct: 678 SSTDNTLKLWDLSMS 692

Length = 793

>gnl|CDD|173611 PTZ00421, PTZ00421, coronin; Provisional

 Score = 41.0 bits (96), Expect = 0.002
 Identities = 19/54 (35%), Positives = 33/54 (61%)

Query: 124 LWDVERGECLNTLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHS 177
           +WDVERG+ +  +  H++ + S+ ++ DG  L + S DK ++I   R G +V S
Sbjct: 152 VWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSS 205

Length = 493

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	602
KOG0273|consensus	524		100.0
KOG0271|consensus	480		100.0
KOG0271|consensus	480		100.0
KOG0318|consensus	603		100.0
KOG0319|consensus	775		100.0
KOG0291|consensus	893		100.0
KOG0306|consensus	888		100.0
KOG0291|consensus	893		100.0
KOG0272|consensus	459		100.0
KOG0319|consensus	775		100.0
KOG0318|consensus	603		100.0
KOG0286|consensus	343		100.0
KOG0272|consensus	459		100.0
KOG0295|consensus	406		100.0
KOG0306|consensus	888		100.0
KOG0296|consensus	399		100.0
KOG0286|consensus	343		100.0
KOG1408|consensus	1080		100.0
KOG0279|consensus	315		100.0
KOG0293|consensus	519		100.0
KOG0315|consensus	311		100.0
KOG0279|consensus	315		100.0
KOG0315|consensus	311		100.0
KOG0273|consensus	524		100.0
KOG0263|consensus	707		100.0
KOG0296|consensus	399		100.0
KOG0284|consensus	464		100.0
KOG0284|consensus	464		100.0
KOG0285|consensus	460		100.0
KOG0265|consensus	338		100.0
KOG0645|consensus	312		100.0
KOG0276|consensus	794		100.0
KOG0263|consensus	707		100.0
KOG0295|consensus	406		100.0
KOG0265|consensus	338		100.0
KOG0282|consensus	503		100.0
KOG0285|consensus	460		100.0
KOG0645|consensus	312		100.0
KOG1539|consensus	910		100.0
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	100.0
KOG0275|consensus	508		100.0
KOG1408|consensus	1080		100.0
KOG0293|consensus	519		100.0
KOG0266|consensus	456		100.0
KOG0276|consensus	794		100.0
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	100.0
KOG0266|consensus	456		100.0
PLN00181	793	protein SPA1-RELATED; Provisional	100.0
KOG1063|consensus	764		100.0
PLN00181	793	protein SPA1-RELATED; Provisional	100.0
KOG0292|consensus	1202		100.0
KOG0281|consensus	499		100.0
KOG0316|consensus	307		100.0
KOG1063|consensus	764		100.0
KOG0316|consensus	307		100.0
KOG0640|consensus	430		100.0
KOG0282|consensus	503		100.0
KOG0313|consensus	423		100.0
KOG0278|consensus	334		100.0
KOG0643|consensus	327		100.0
KOG0313|consensus	423		100.0
KOG2106|consensus	626		100.0
KOG1407|consensus	313		100.0
KOG0292|consensus	1202		100.0
KOG0281|consensus	499		100.0
KOG0643|consensus	327		100.0
KOG0283|consensus	712		100.0
KOG0288|consensus	459		100.0
KOG1407|consensus	313		100.0
KOG0277|consensus	311		100.0
KOG0310|consensus	487		100.0
KOG2048|consensus	691		100.0
KOG0274|consensus	537		100.0
KOG2106|consensus	626		100.0
KOG0275|consensus	508		100.0
KOG0278|consensus	334		100.0
KOG0973|consensus	942		100.0
KOG0300|consensus	481		100.0
KOG1446|consensus	311		100.0
KOG1539|consensus	910		99.98
KOG1446|consensus	311		99.98
KOG0277|consensus	311		99.98
KOG0283|consensus	712		99.97
KOG0772|consensus	641		99.97
KOG0268|consensus	433		99.97
KOG0973|consensus	942		99.97
KOG0772|consensus	641		99.97
KOG0641|consensus	350		99.97
KOG0305|consensus	484		99.97
KOG0288|consensus	459		99.97
KOG0299|consensus	479		99.97
PTZ00421	493	coronin; Provisional	99.97
KOG0640|consensus	430		99.97
KOG0310|consensus	487		99.97
KOG0274|consensus	537		99.97
KOG0299|consensus	479		99.97
KOG2048|consensus	691		99.97
KOG2096|consensus	420		99.97
KOG0641|consensus	350		99.97
KOG0305|consensus	484		99.97
KOG0301|consensus	745		99.97
KOG0268|consensus	433		99.97
KOG0301|consensus	745		99.97
KOG0289|consensus	506		99.97
PTZ00421	493	coronin; Provisional	99.97
KOG0294|consensus	362		99.97
KOG0294|consensus	362		99.96
KOG0647|consensus	347		99.96
PTZ00420	568	coronin; Provisional	99.96
KOG1036|consensus	323		99.96
KOG1036|consensus	323		99.96
KOG0308|consensus	735		99.96
KOG1445|consensus	1012		99.96
KOG0289|consensus	506		99.96
KOG0647|consensus	347		99.96
PTZ00420	568	coronin; Provisional	99.96
KOG2096|consensus	420		99.96
KOG0308|consensus	735		99.96
KOG4283|consensus	397		99.96
KOG0639|consensus	705		99.96
KOG0646|consensus	476		99.96
KOG0650|consensus	733		99.96
KOG1332|consensus	299		99.95
KOG0639|consensus	705		99.95
KOG0300|consensus	481		99.95
KOG0264|consensus	422		99.95
KOG4283|consensus	397		99.95
KOG1963|consensus	792		99.95
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.95
KOG2055|consensus	514		99.95
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.95
KOG1332|consensus	299		99.95
KOG2055|consensus	514		99.95
KOG0269|consensus	839		99.94
KOG0264|consensus	422		99.94
KOG1274|consensus	933		99.94
KOG1273|consensus	405		99.94
KOG0267|consensus	825		99.94
KOG0646|consensus	476		99.94
KOG1274|consensus	933		99.94
KOG1273|consensus	405		99.93
KOG2445|consensus	361		99.93
KOG0269|consensus	839		99.93
KOG1538|consensus	1081		99.93
KOG4328|consensus	498		99.92
KOG4378|consensus	673		99.92
KOG0267|consensus	825		99.92
KOG2445|consensus	361		99.92
KOG1445|consensus	1012		99.92
KOG0302|consensus	440		99.92
KOG0650|consensus	733		99.92
KOG4328|consensus	498		99.92
KOG4378|consensus	673		99.92
KOG0321|consensus	720		99.91
COG2319	466	FOG: WD40 repeat [General function prediction only	99.91
KOG1009|consensus	434		99.91
KOG0270|consensus	463		99.91
KOG1034|consensus	385		99.91
KOG2919|consensus	406		99.91
KOG0307|consensus	1049		99.9
KOG4497|consensus	447		99.89
KOG0321|consensus	720		99.89
KOG2919|consensus	406		99.89
KOG0302|consensus	440		99.89
KOG1034|consensus	385		99.89
COG2319	466	FOG: WD40 repeat [General function prediction only	99.88
KOG0270|consensus	463		99.88
KOG1009|consensus	434		99.88
KOG1538|consensus	1081		99.88
KOG0322|consensus	323		99.88
KOG0307|consensus	1049		99.88
KOG1524|consensus	737		99.87
KOG1587|consensus	555		99.87
KOG1963|consensus	792		99.86
KOG1188|consensus	376		99.85
KOG1524|consensus	737		99.85
KOG0642|consensus	577		99.85
KOG0642|consensus	577		99.84
KOG1310|consensus	758		99.84
KOG1007|consensus	370		99.84
KOG4227|consensus	609		99.83
KOG0290|consensus	364		99.83
KOG0303|consensus	472		99.83
KOG0649|consensus	325		99.83
KOG0644|consensus	1113		99.83
KOG1587|consensus	555		99.83
KOG1007|consensus	370		99.82
KOG1188|consensus	376		99.82
KOG4227|consensus	609		99.82
KOG0649|consensus	325		99.82
KOG1240|consensus	1431		99.81
KOG0322|consensus	323		99.81
KOG1517|consensus	1387		99.81
KOG2110|consensus	391		99.81
KOG0290|consensus	364		99.81
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.8
KOG0644|consensus	1113		99.8
KOG1523|consensus	361		99.8
KOG0303|consensus	472		99.8
KOG1517|consensus	1387		99.8
PRK11028	330	6-phosphogluconolactonase; Provisional	99.79
KOG2110|consensus	391		99.79
KOG1334|consensus	559		99.78
PRK11028	330	6-phosphogluconolactonase; Provisional	99.78
KOG4497|consensus	447		99.78
KOG0771|consensus	398		99.78
KOG1272|consensus	545		99.77
PRK01742	429	tolB translocation protein TolB; Provisional	99.76
KOG1523|consensus	361		99.76
KOG0771|consensus	398		99.75
KOG1912|consensus	1062		99.74
PRK01742	429	tolB translocation protein TolB; Provisional	99.74
KOG2315|consensus	566		99.74
KOG1334|consensus	559		99.74
KOG2394|consensus	636		99.73
KOG1272|consensus	545		99.73
KOG2139|consensus	445		99.73
KOG2111|consensus	346		99.72
KOG2111|consensus	346		99.72
KOG2139|consensus	445		99.72
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.7
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	99.7
PRK03629	429	tolB translocation protein TolB; Provisional	99.68
PRK03629	429	tolB translocation protein TolB; Provisional	99.68
KOG2321|consensus	703		99.67
KOG2041|consensus	1189		99.67
PRK04922	433	tolB translocation protein TolB; Provisional	99.66
KOG1240|consensus	1431		99.66
KOG2321|consensus	703		99.65
PRK05137	435	tolB translocation protein TolB; Provisional	99.64
PRK05137	435	tolB translocation protein TolB; Provisional	99.64
PRK02889	427	tolB translocation protein TolB; Provisional	99.64
PRK04922	433	tolB translocation protein TolB; Provisional	99.63
KOG1354|consensus	433		99.63
KOG2394|consensus	636		99.63
PRK02889	427	tolB translocation protein TolB; Provisional	99.62
KOG1912|consensus	1062		99.62
KOG2315|consensus	566		99.62
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	99.61
KOG3881|consensus	412		99.61
KOG1409|consensus	404		99.61
KOG1310|consensus	758		99.61
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	99.58
KOG3881|consensus	412		99.58
KOG2314|consensus	698		99.57
KOG1354|consensus	433		99.57
KOG0974|consensus	967		99.57
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.57
KOG2314|consensus	698		99.57
KOG0974|consensus	967		99.54
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.54
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	99.51
KOG1409|consensus	404		99.51
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	99.5
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.49
PRK00178	430	tolB translocation protein TolB; Provisional	99.49
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	99.48
KOG2041|consensus	1189		99.48
PRK04792	448	tolB translocation protein TolB; Provisional	99.48
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.47
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.47
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.47
PRK00178	430	tolB translocation protein TolB; Provisional	99.46
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.45
KOG4547|consensus	541		99.45
PRK04792	448	tolB translocation protein TolB; Provisional	99.44
COG4946	668	Uncharacterized protein related to the periplasmic	99.42
PRK01029	428	tolB translocation protein TolB; Provisional	99.42
COG4946	668	Uncharacterized protein related to the periplasmic	99.4
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.4
PRK01029	428	tolB translocation protein TolB; Provisional	99.37
KOG0280|consensus	339		99.37
KOG1064|consensus	2439		99.35
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.31
KOG1064|consensus	2439		99.29
KOG4547|consensus	541		99.28
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.27
KOG0280|consensus	339		99.23
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	99.21
KOG4190|consensus	1034		99.18
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.18
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	99.15
KOG4190|consensus	1034		99.15
KOG4532|consensus	344		99.13
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	99.12
PF08513	27	LisH: LisH; InterPro: IPR013720 The LisH motif is	99.12
KOG4532|consensus	344		99.11
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.09
KOG0882|consensus	558		99.08
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	99.08
KOG3914|consensus	390		99.08
KOG0309|consensus	1081		99.07
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	99.07
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	99.06
PRK04043	419	tolB translocation protein TolB; Provisional	99.05
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	99.05
KOG3914|consensus	390		99.03
PRK04043	419	tolB translocation protein TolB; Provisional	99.01
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	98.99
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.98
KOG0309|consensus	1081		98.98
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.97
KOG4649|consensus	354		98.97
KOG0882|consensus	558		98.92
KOG4714|consensus	319		98.91
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.88
KOG2695|consensus	425		98.85
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.84
KOG1275|consensus	1118		98.83
KOG2114|consensus	933		98.82
KOG1920|consensus	1265		98.81
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.81
KOG4714|consensus	319		98.77
KOG3617|consensus	1416		98.75
KOG1645|consensus	463		98.75
KOG2066|consensus	846		98.73
KOG3621|consensus	726		98.73
KOG1920|consensus	1265		98.73
KOG1832|consensus	1516		98.72
KOG1645|consensus	463		98.69
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.69
KOG1275|consensus	1118		98.69
KOG2695|consensus	425		98.68
KOG1832|consensus	1516		98.67
KOG2066|consensus	846		98.66
KOG3617|consensus	1416		98.65
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	98.58
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	98.55
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	98.52
PRK02888	635	nitrous-oxide reductase; Validated	98.51
KOG3621|consensus	726		98.49
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	98.49
KOG4649|consensus	354		98.48
KOG2114|consensus	933		98.48
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	98.44
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	98.43
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	98.42
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	98.41
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	98.35
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	98.33
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.32
PRK02888	635	nitrous-oxide reductase; Validated	98.31
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	98.28
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	98.27
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	98.24
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	98.24
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.23
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	98.18
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	98.18
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	98.16
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	98.12
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	98.11
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	98.11
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	98.05
KOG1008|consensus	783		98.05
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	98.04
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	98.03
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	98.03
KOG1897|consensus	1096		97.94
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	97.91
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.87
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	97.87
smart00667	34	LisH Lissencephaly type-1-like homology motif. Alp	97.78
KOG1008|consensus	783		97.77
KOG1897|consensus	1096		97.68
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	97.65
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	97.64
PRK13616	591	lipoprotein LpqB; Provisional	97.61
COG3391	381	Uncharacterized conserved protein [Function unknow	97.59
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	97.56
KOG4640|consensus	665		97.54
KOG4640|consensus	665		97.53
PRK13616	591	lipoprotein LpqB; Provisional	97.52
COG3391	381	Uncharacterized conserved protein [Function unknow	97.51
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	97.51
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	97.5
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.5
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	97.49
KOG2079|consensus	1206		97.48
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	97.47
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	97.46
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	97.42
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	97.38
KOG4499|consensus	310		97.23
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	97.2
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	97.18
KOG2395|consensus	644		97.16
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	97.05
KOG2395|consensus	644		97.02
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	96.99
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	96.92
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	96.92
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	96.89
PHA02713	557	hypothetical protein; Provisional	96.83
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	96.81
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	96.78
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	96.76
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	96.58
KOG4441|consensus	571		96.54
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	96.53
KOG2444|consensus	238		96.52
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	96.46
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	96.46
PHA02713	557	hypothetical protein; Provisional	96.45
PRK13684	334	Ycf48-like protein; Provisional	96.4
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	96.4
KOG3630|consensus	1405		96.3
KOG4441|consensus	571		96.29
KOG2280|consensus	829		96.28
KOG2079|consensus	1206		96.25
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	96.23
KOG2444|consensus	238		96.03
KOG4499|consensus	310		96.02
PRK10115	686	protease 2; Provisional	95.98
PF10433	504	MMS1_N: Mono-functional DNA-alkylating methyl meth	95.91
PF14727	418	PHTB1_N: PTHB1 N-terminus	95.75
KOG1916|consensus	1283		95.64
KOG2280|consensus	829		95.54
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	95.17
KOG3630|consensus	1405		95.17
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	95.12
COG3292	671	Predicted periplasmic ligand-binding sensor domain	95.11
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	95.1
PHA03098	534	kelch-like protein; Provisional	95.08
PF14727	418	PHTB1_N: PTHB1 N-terminus	95.03
KOG3616|consensus	1636		94.97
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	94.95
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	94.94
COG1520	370	FOG: WD40-like repeat [Function unknown]	94.82
COG1520	370	FOG: WD40-like repeat [Function unknown]	94.77
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	94.67
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	94.45
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	94.19
KOG2377|consensus	657		94.01
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	93.86
PRK10115	686	protease 2; Provisional	93.7
PF07250	243	Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP	93.64
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	93.59
COG5290	1243	IkappaB kinase complex, IKAP component [Transcript	93.4
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	93.38
KOG2727|consensus	1244		93.3
KOG1916|consensus	1283		93.22
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	93.21
PHA02790	480	Kelch-like protein; Provisional	93.18
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	93.18
PHA02790	480	Kelch-like protein; Provisional	93.17
PHA03098	534	kelch-like protein; Provisional	92.94
COG5167	776	VID27 Protein involved in vacuole import and degra	92.78
PRK13684	334	Ycf48-like protein; Provisional	92.75
KOG2247|consensus	615		92.64
KOG4460|consensus	741		92.32
KOG1983|consensus	993		92.12
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	92.09
COG4590	733	ABC-type uncharacterized transport system, permeas	91.95
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	91.93
KOG2247|consensus	615		91.76
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	91.68
KOG1983|consensus	993		91.32
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	91.19
COG5167	776	VID27 Protein involved in vacuole import and degra	90.71
KOG1900|consensus	1311		90.71
PF11635	753	Med16: Mediator complex subunit 16; InterPro: IPR0	90.13
KOG1898|consensus	1205		89.81
KOG2659|consensus	228		89.47
KOG4460|consensus	741		89.45
PF05935	477	Arylsulfotrans: Arylsulfotransferase (ASST); Inter	88.97
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	88.93
PF03022	287	MRJP: Major royal jelly protein; InterPro: IPR0035	88.85
PF07676	39	PD40: WD40-like Beta Propeller Repeat; InterPro: I	88.83
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	88.74
PLN00033	398	photosystem II stability/assembly factor; Provisio	88.58
PF05935	477	Arylsulfotrans: Arylsulfotransferase (ASST); Inter	88.32
COG5290	1243	IkappaB kinase complex, IKAP component [Transcript	88.01
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	87.74
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	87.21
PF10214	765	Rrn6: RNA polymerase I-specific transcription-init	86.78
smart00036	302	CNH Domain found in NIK1-like kinases, mouse citro	86.64
PF08801	422	Nucleoporin_N: Nup133 N terminal like; InterPro: I	85.61
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	85.59
KOG1900|consensus	1311		85.4
PF13449	326	Phytase-like: Esterase-like activity of phytase	85.06
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	84.76
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	84.71
PF08801	422	Nucleoporin_N: Nup133 N terminal like; InterPro: I	84.39
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	84.15
KOG1898|consensus	1205		84.05
KOG3616|consensus	1636		83.9
PF09398	81	FOP_dimer: FOP N terminal dimerisation domain; Int	83.51
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	83.33
PF11635	753	Med16: Mediator complex subunit 16; InterPro: IPR0	83.3
PF10395	670	Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an	83.27
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	83.23
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	82.53
COG4590	733	ABC-type uncharacterized transport system, permeas	81.54
PF13449	326	Phytase-like: Esterase-like activity of phytase	81.35
PF07250	243	Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP	80.39
PLN00033	398	photosystem II stability/assembly factor; Provisio	80.27

>KOG0273|consensus

Probab=100.00  E-value=1.3e-83  Score=569.18  Aligned_cols=516  Identities=58%  Similarity=0.941  Sum_probs=412.2

Q ss_pred             CcccccchhhhhhhhhhhcCceeeeeccccccCCccCCCCCCcCCchhHHHHHHhhceeEEEeeeeCCCCccc-cccccc
Q psy12697          1 MTYSSDEVNFLVYRYLQESGFQHSAYTFGIESHISQSNIDGALVPPAALLSIIQKGLQYTEAEISVGENGQEQ-RPTESL   79 (602)
Q Consensus         1 ~~~~s~e~n~li~ryL~e~g~~~~a~~~~~e~~~~~~~~~~~~~~~~~li~~~qk~l~~~~~e~~~~~~~~~~-~~~~~~   79 (602)
                      ||||||||||||||||||+||.||||+|++|+++.+.+.+...+|||+||++|||||+|.|.|.++.+++... ++.+.+
T Consensus         1 msitsdEvN~LV~RYLqE~G~~hsaftf~~Et~is~~n~~~~~vp~gaLi~ivQKGLqY~E~E~~~~~~~~v~d~~~e~~   80 (524)
T KOG0273|consen    1 MSITSDEVNFLVWRYLQESGFSHSAFTFGIETGISQSNINGSLVPPGALISIVQKGLQYVEAEKHLNESGVVFDAPIESL   80 (524)
T ss_pred             CcccHHHHHHHHHHHHHHcCcceeeEEeeecccccccCCCccccChHHHHHHHHhhhhhhheeeeeccCCcccccccccc
Confidence            9999999999999999999999999999999999999999999999999999999999999999999988754 788888


Q ss_pred             cccccchhhHHHhhhhhhhccccCCCCCCCcccCCcceeccceeeeecccceeeeeeeccCCceEEEEECCCCCeEEEee
Q psy12697         80 SLIDAVLPDFVANRQNQLNSQRTNNPSTGPAITNGEEVHRLTLPLWDVERGECLNTLTRHTEPVYSVAFSPDGKFLASGS  159 (602)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vwd~~~~~~~~~l~~h~~~V~~~~~s~d~~~l~s~~  159 (602)
                      .+.+.+.++..+.+++......+.....          +...+. -|..++..       .        +|-|.  + .-
T Consensus        81 ~~~d~v~~~~~ql~~~~~~e~~s~~~~~----------~~~~~~-~~~~~~s~-------s--------~~ag~--~-~~  131 (524)
T KOG0273|consen   81 SLEDLVMEDVVQLRQQAFREKLSEEQFC----------AQLKIA-QDKESGST-------S--------TPAGS--I-SQ  131 (524)
T ss_pred             chhhhccccccccchhhhhhhccccchh----------hhhhhh-hhhccCCc-------C--------CCCCc--c-cc
Confidence            8877777666555433222111100000          000000 00000000       0        00000  0 00


Q ss_pred             CCceEEEEecCCceeEEEeeccCceEEEEeCCCCCCCCCCCCccccccccccCCcceEeeCCCcceEEEEEcCCCC-EEE
Q psy12697        160 FDKCVHIWSARTGQLVHSYKGTGGIFEVCWNSRGTPPNPPESMEVDASIEIPQSKATKLIGHESEVFICAWNPVKD-FLA  238 (602)
Q Consensus       160 ~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~-~l~  238 (602)
                      .|+....=+...++.-.       ...        .-......+.+....++......+. |..+|.+++|+|-.. .++
T Consensus       132 ~d~a~~~er~~n~eed~-------a~~--------I~~~~e~~~i~~~~~I~~~~~kvl~-~~~~V~~~~WnP~~~~lla  195 (524)
T KOG0273|consen  132 RDGAKTGERTSNGEEDK-------AMS--------IDVHTEPMEIDGGVEIPSSKAKVLR-HESEVFICAWNPLRDGLLA  195 (524)
T ss_pred             ccchhhcchhcccccCc-------ccc--------ccccccceeecccccccccceeecc-CCCceEEEecCchhhhhhh
Confidence            00000000000000000       000        0000111222334455666666666 999999999999876 999


Q ss_pred             EeeCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEeeCCCCCeEEEEeCCCeEEEEcCCCcceeecc
Q psy12697        239 SGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFLATGSYDGYARIWTSDGSLKSTLG  318 (602)
Q Consensus       239 s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~  318 (602)
                      +++.|.+.++|++.....  ....+..++|++...+...+.+..|++++|+.+|..||+|..||.+++|+..|.+..++.
T Consensus       196 sg~~~s~ari~~l~e~~~--~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~LatG~~~G~~riw~~~G~l~~tl~  273 (524)
T KOG0273|consen  196 SGSGDSTARIWNLLENSN--IGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLLATGSEDGEARIWNKDGNLISTLG  273 (524)
T ss_pred             ccCCccceeeeeehhhcc--ccchhhhhhhhhhhhcccCCccCCcceEEecCCCCeEEEeecCcEEEEEecCchhhhhhh
Confidence            999999999999976221  222344567788788888888999999999999999999999999999999999999999


Q ss_pred             cccCCeEEEEEccCCCEEEEEecCCcEEEEeCCCCceeEEeeeccCCeeeeeccCCCeEEEeeCCCeEEEEEcCCCceee
Q psy12697        319 QHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVK  398 (602)
Q Consensus       319 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~  398 (602)
                      .|.++|.++.|+..|+||++++.|+++.+||..+++..+.+..+..+..++.|..+..|++++.|+.|+++.+....|+.
T Consensus       274 ~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~  353 (524)
T KOG0273|consen  274 QHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSNDEFATSSTDGCIHVCKVGEDRPVK  353 (524)
T ss_pred             ccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEecCceEeecCCCceEEEEEecCCCcce
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EeccCCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeeeEeeccccccEEEEEECCCCCCCCCCCcceeeeeeeccCC
Q psy12697        399 SFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQ  478 (602)
Q Consensus       399 ~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  478 (602)
                      ++.+|.++|.++.|+|.|.+|+++++|++++||......+...++.|...|+.+.|+|+++....+.             
T Consensus       354 t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~-------------  420 (524)
T KOG0273|consen  354 TFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPN-------------  420 (524)
T ss_pred             eeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCc-------------
Confidence            9999999999999999999999999999999999999999999999999999999999987544433             


Q ss_pred             ccCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeeecccCCCeeEeeecCCc-eEEEeeCCCcEEEeecCCCCcee
Q psy12697        479 HKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNT-SFASCSTDQHIHVCKLHSDKPVK  557 (602)
Q Consensus       479 ~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~-~l~~~~~d~~i~iw~~~~~~~~~  557 (602)
                                  .+..+++++.|++|++||+..+.++..|..|..+|++++|+|+| ++|+|+.||.|.+|+.+++    
T Consensus       421 ------------~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~----  484 (524)
T KOG0273|consen  421 ------------MNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTG----  484 (524)
T ss_pred             ------------CCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccch----
Confidence                        44569999999999999999999999999999999999999999 9999999999999996554    


Q ss_pred             eeecccccceEEEEecCCcEEEEEECCCCCeEEEeccCCeEEe
Q psy12697        558 SFEGHTTGQLVHSYKGTGGIFEVCWNSRGDKVGASASDGSVFK  600 (602)
Q Consensus       558 ~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~v~i  600 (602)
                              +.++.+.+.+.|+.|+|+.+|.+|.++..||.+++
T Consensus       485 --------~l~~s~~~~~~Ifel~Wn~~G~kl~~~~sd~~vcv  519 (524)
T KOG0273|consen  485 --------KLVKSYQGTGGIFELCWNAAGDKLGACASDGSVCV  519 (524)
T ss_pred             --------heeEeecCCCeEEEEEEcCCCCEEEEEecCCCceE
Confidence                    44555555678999999999999999999998876

>KOG0271|consensus

Probab=100.00  E-value=1.5e-57  Score=392.95  Aligned_cols=330  Identities=30%  Similarity=0.502  Sum_probs=293.6

Q ss_pred             eeeeeeeccCCceEEEEECCCCCeEEEeeCCceEEEEecCCceeEEEeeccCceEEEEeCCCCCCCCCCCCccccccccc
Q psy12697        131 ECLNTLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKGTGGIFEVCWNSRGTPPNPPESMEVDASIEI  210 (602)
Q Consensus       131 ~~~~~l~~h~~~V~~~~~s~d~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (602)
                      .+-..+.||.++|.|++|+|+|+.||||+.|.++++||+.+..++                                   
T Consensus       106 rCssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~-----------------------------------  150 (480)
T KOG0271|consen  106 RCSSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPL-----------------------------------  150 (480)
T ss_pred             eeccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcc-----------------------------------
Confidence            455678999999999999999999999999999999999887766                                   


Q ss_pred             cCCcceEeeCCCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEeeCC
Q psy12697        211 PQSKATKLIGHESEVFICAWNPVKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNN  290 (602)
Q Consensus       211 ~~~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  290 (602)
                           .+..+|...|.|++|+||++.||+|+.||+|++||..++++..                                
T Consensus       151 -----~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g--------------------------------  193 (480)
T KOG0271|consen  151 -----FTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIG--------------------------------  193 (480)
T ss_pred             -----eeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCCccc--------------------------------
Confidence                 5567899999999999999999999999999999988776431                                


Q ss_pred             CCCeEEEEeCCCeEEEEcCCCcceeecccccCCeEEEEEc-----cCCCEEEEEecCCcEEEEeCCCCceeEEeeeccCC
Q psy12697        291 NGSFLATGSYDGYARIWTSDGSLKSTLGQHKGPIFALKWN-----KRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAP  365 (602)
Q Consensus       291 ~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~i~~~~~~-----~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~  365 (602)
                                              ..+.+|...|++++|.     |..++|++++.||.++|||+..+.++..+.+|..+
T Consensus       194 ------------------------~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~  249 (480)
T KOG0271|consen  194 ------------------------RALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTAS  249 (480)
T ss_pred             ------------------------ccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccc
Confidence                                    1344566666666664     45678999999999999999999999999999999


Q ss_pred             eeeeeccCCCeEEEeeCCCeEEEEEcCCCceeeEeccCCCCeEEEEEC-----------CCCC-----------------
Q psy12697        366 ALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWD-----------PQGL-----------------  417 (602)
Q Consensus       366 ~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~-----------~~~~-----------------  417 (602)
                      |+|+.|-.++.+++++.|++|++|+...++....+++|...|+.++.+           |.++                 
T Consensus       250 VTCvrwGG~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~  329 (480)
T KOG0271|consen  250 VTCVRWGGEGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYE  329 (480)
T ss_pred             eEEEEEcCCceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999887           2233                 


Q ss_pred             --------EEEEEECCCeEEEEeCCCC-eeeEeeccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEE
Q psy12697        418 --------LLASCSDDMTLKIWSLDKD-NCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKW  488 (602)
Q Consensus       418 --------~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~  488 (602)
                              .|++|++|.++.+|+.... +++..+.                                  +|..-|+.+.|
T Consensus       330 ~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmt----------------------------------gHq~lVn~V~f  375 (480)
T KOG0271|consen  330 AVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMT----------------------------------GHQALVNHVSF  375 (480)
T ss_pred             HhhccCcceeEEecCCceEEEecccccccchhhhh----------------------------------chhhheeeEEE
Confidence                    5999999999999986543 3444443                                  46667777888


Q ss_pred             ccCCCEEEEEeCCCeEEEEeCCCCceeeeecccCCCeeEeeecCCc-eEEEeeCCCcEEEeecCCCCceeeeecccccce
Q psy12697        489 NKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNT-SFASCSTDQHIHVCKLHSDKPVKSFEGHTTGQL  567 (602)
Q Consensus       489 s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~-~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~  567 (602)
                      |||++|+|+++.|..|++||..+|+.+.+|++|-++|+.++|+.|. +|++|+.|.+++||++++.+....+++|.    
T Consensus       376 SPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~----  451 (480)
T KOG0271|consen  376 SPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHA----  451 (480)
T ss_pred             CCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEeccCccEEEEcCCCceEEEEEeeeeeecccCCCCC----
Confidence            8899999999999999999999999999999999999999999999 99999999999999999999999999987    


Q ss_pred             EEEEecCCcEEEEEECCCCCeEEEeccCCeEEee
Q psy12697        568 VHSYKGTGGIFEVCWNSRGDKVGASASDGSVFKN  601 (602)
Q Consensus       568 ~~~~~~~~~i~~l~~spdg~~l~~~~~dg~v~i~  601 (602)
                             .+|+++.|+|||..+++|+.|..++++
T Consensus       452 -------DEVf~vDwspDG~rV~sggkdkv~~lw  478 (480)
T KOG0271|consen  452 -------DEVFAVDWSPDGQRVASGGKDKVLRLW  478 (480)
T ss_pred             -------ceEEEEEecCCCceeecCCCceEEEee
Confidence                   779999999999999999999999986

>KOG0271|consensus

Probab=100.00  E-value=6.8e-53  Score=364.25  Aligned_cols=314  Identities=28%  Similarity=0.521  Sum_probs=272.7

Q ss_pred             CCCcccCCcceeccceeeeecccceeeeeeeccCCceEEEEECCCCCeEEEeeCCceEEEEecCCceeEEEeeccCceEE
Q psy12697        107 TGPAITNGEEVHRLTLPLWDVERGECLNTLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKGTGGIFE  186 (602)
Q Consensus       107 ~~~~~~~~~~~~~~~i~vwd~~~~~~~~~l~~h~~~V~~~~~s~d~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~  186 (602)
                      ++..+++|.+  +.++|+||+.+..+.++.++|...|.|++|||||+.||+|+.||+|++||..+|+++.          
T Consensus       126 ~g~~l~tGsG--D~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g----------  193 (480)
T KOG0271|consen  126 TGSRLVTGSG--DTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIG----------  193 (480)
T ss_pred             CCceEEecCC--CceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCCccc----------
Confidence            5666676665  4799999999999999999999999999999999999999999999999999998763          


Q ss_pred             EEeCCCCCCCCCCCCccccccccccCCcceEeeCCCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCccceEEE
Q psy12697        187 VCWNSRGTPPNPPESMEVDASIEIPQSKATKLIGHESEVFICAWNPVKDFLASGSGDSTARIWDMTDSTKKDPKELQIVL  266 (602)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~  266 (602)
                                                   ..+.+|...|++++|.|-.                                
T Consensus       194 -----------------------------~~l~gH~K~It~Lawep~h--------------------------------  212 (480)
T KOG0271|consen  194 -----------------------------RALRGHKKWITALAWEPLH--------------------------------  212 (480)
T ss_pred             -----------------------------ccccCcccceeEEeecccc--------------------------------
Confidence                                         5678999999999998731                                


Q ss_pred             EEEecCCCcccCCCCceeEEeeCCCCCeEEEEeCCCeEEEEcCC-CcceeecccccCCeEEEEEccCCCEEEEEecCCcE
Q psy12697        267 RHCISKGGTEVPSNKDVTSLDWNNNGSFLATGSYDGYARIWTSD-GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTT  345 (602)
Q Consensus       267 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i  345 (602)
                                           ..|..++||+++.||.++|||.. +..+..+.+|..+|+|++|--+| +|++++.|++|
T Consensus       213 ---------------------l~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~g-liySgS~DrtI  270 (480)
T KOG0271|consen  213 ---------------------LVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEG-LIYSGSQDRTI  270 (480)
T ss_pred             ---------------------cCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCCc-eEEecCCCceE
Confidence                                 11233456666666666666655 45566778999999999997654 89999999999


Q ss_pred             EEEeCCCCceeEEeeeccCCeeeeeccC-------------------------------------CCeEEEeeCCCeEEE
Q psy12697        346 IIWDAASGQCEQQFSFHSAPALDVDWQS-------------------------------------NTSFASCSTDQHIHV  388 (602)
Q Consensus       346 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------------~~~~~~~~~~~~i~i  388 (602)
                      ++|+...|.+.+.+.+|...|..++.+.                                     ...+++|+.|.++.+
T Consensus       271 kvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlfl  350 (480)
T KOG0271|consen  271 KVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFL  350 (480)
T ss_pred             EEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEE
Confidence            9999999999999999998888777651                                     125899999999999


Q ss_pred             EEcCC-CceeeEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeeeEeeccccccEEEEEECCCCCCCCCCCcc
Q psy12697        389 CKLHS-DKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMS  467 (602)
Q Consensus       389 ~d~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~  467 (602)
                      |+... .+++..+.+|...|+.+.||||++++|+++-|..|++||.++|+.+.++++|-..|+.++|+            
T Consensus       351 W~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvaws------------  418 (480)
T KOG0271|consen  351 WNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWS------------  418 (480)
T ss_pred             ecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEec------------
Confidence            99764 45899999999999999999999999999999999999999999998888766666555554            


Q ss_pred             eeeeeeeccCCccCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeeecccCCCeeEeeecCCc-eEEEeeCCCcEE
Q psy12697        468 LIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNT-SFASCSTDQHIH  546 (602)
Q Consensus       468 ~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~-~l~~~~~d~~i~  546 (602)
                                            .|.++|++|+.|.++++||+++.++...+.+|.+.|.++.|+||| ++++|+.|..++
T Consensus       419 ----------------------aDsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vDwspDG~rV~sggkdkv~~  476 (480)
T KOG0271|consen  419 ----------------------ADSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFAVDWSPDGQRVASGGKDKVLR  476 (480)
T ss_pred             ----------------------cCccEEEEcCCCceEEEEEeeeeeecccCCCCCceEEEEEecCCCceeecCCCceEEE
Confidence                                  577899999999999999999999999999999999999999999 999999999999


Q ss_pred             Eee
Q psy12697        547 VCK  549 (602)
Q Consensus       547 iw~  549 (602)
                      +|.
T Consensus       477 lw~  479 (480)
T KOG0271|consen  477 LWR  479 (480)
T ss_pred             eec
Confidence            995

>KOG0318|consensus

Probab=100.00  E-value=1.5e-48  Score=351.11  Aligned_cols=455  Identities=19%  Similarity=0.293  Sum_probs=361.3

Q ss_pred             cceeeeecccceeeeeeeccCCceEEEEECCCCCeEEEeeCCceEEEEecCCceeEE--Eeec-cCceEEEEeCCCCCCC
Q psy12697        120 LTLPLWDVERGECLNTLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVH--SYKG-TGGIFEVCWNSRGTPP  196 (602)
Q Consensus       120 ~~i~vwd~~~~~~~~~l~~h~~~V~~~~~s~d~~~l~s~~~d~~v~iwd~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~  196 (602)
                      .+|.+-++++......+.+|..+++-..|||.|.|+|+|...|.|+|||....+.+.  +++. .+++..+.|+.++..+
T Consensus        39 ksv~ir~i~~~~~~~iYtEH~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI  118 (603)
T KOG0318|consen   39 KSVIIRNIDNPASVDIYTEHAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRI  118 (603)
T ss_pred             CEEEEEECCCccceeeeccccceeEEEEeCCCceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEE
Confidence            467788888888899999999999999999999999999999999999987754442  3332 5788999999999988


Q ss_pred             CCCCCcccccc---ccccCCcceEeeCCCcceEEEEEcCCCC-EEEEeeCCCcEEEEeCCCCCCCCCccceEEEEEEecC
Q psy12697        197 NPPESMEVDAS---IEIPQSKATKLIGHESEVFICAWNPVKD-FLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISK  272 (602)
Q Consensus       197 ~~~~~~~~~~~---~~~~~~~~~~l~~h~~~v~~~~~~~~~~-~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~  272 (602)
                      ...........   ..-.....-.+.||...|.+++|-|... .+++|+.|++|.+|+=.-.+      +.         
T Consensus       119 ~avGEGrerfg~~F~~DSG~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFK------Fk---------  183 (603)
T KOG0318|consen  119 AAVGEGRERFGHVFLWDSGNSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFK------FK---------  183 (603)
T ss_pred             EEEecCccceeEEEEecCCCccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCee------ee---------
Confidence            77665443322   2235566778999999999999999875 68999999999999643211      11         


Q ss_pred             CCcccCCCCceeEEeeCCCCCeEEEEeCCCeEEEEcC-CCcceeecc---cccCCeEEEEEccCCCEEEEEecCCcEEEE
Q psy12697        273 GGTEVPSNKDVTSLDWNNNGSFLATGSYDGYARIWTS-DGSLKSTLG---QHKGPIFALKWNKRGNYILSAGVDKTTIIW  348 (602)
Q Consensus       273 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~-~~~~~~~~~---~~~~~i~~~~~~~~~~~l~~~~~dg~i~~w  348 (602)
                       .....|..-|.|+.|+|||.++++.+.||.+.+||- .++.+..+.   +|.+.|.+++|+||+..+++++.|.++++|
T Consensus       184 -~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIW  262 (603)
T KOG0318|consen  184 -SSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIW  262 (603)
T ss_pred             -ecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEE
Confidence             122345678999999999999999999999999995 477777776   899999999999999999999999999999


Q ss_pred             eCCCCceeEEeeeccC---CeeeeeccCCCeEEEeeCCCeEEEEEcCCCceeeEeccCCCCeEEEEECCCCCEEEEEECC
Q psy12697        349 DAASGQCEQQFSFHSA---PALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDD  425 (602)
Q Consensus       349 d~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d  425 (602)
                      |+.+.++++++.....   ....+.|. +..+++.+.+|.|.+++.....+...+.+|...|+++..+|++++|++|+.|
T Consensus       263 dVs~~slv~t~~~~~~v~dqqvG~lWq-kd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyD  341 (603)
T KOG0318|consen  263 DVSTNSLVSTWPMGSTVEDQQVGCLWQ-KDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYD  341 (603)
T ss_pred             EeeccceEEEeecCCchhceEEEEEEe-CCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccC
Confidence            9999999998876543   34455666 8889999999999999999999999999999999999999999999999999


Q ss_pred             CeEEEEeCCCCeeeEee-ccccccEEEEEECCCCCCCCCC---------------------------------Cc--cee
Q psy12697        426 MTLKIWSLDKDNCVHDL-QAHNKEIYTIKWSPTGPETSNP---------------------------------NM--SLI  469 (602)
Q Consensus       426 g~i~iwd~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~---------------------------------~~--~~~  469 (602)
                      |.|.-|+..++..-+.. +.|...|.+++-+..+.....+                                 ..  ..+
T Consensus       342 G~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~av  421 (603)
T KOG0318|consen  342 GHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAV  421 (603)
T ss_pred             ceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEE
Confidence            99999999887554332 4555555555544422111100                                 00  000


Q ss_pred             eeee---eccC--------CccCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCcee--eeecccCCCeeEeeecCCc-e
Q psy12697        470 FILK---STLG--------QHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCE--QQFSFHSAPALDVDWQSNT-S  535 (602)
Q Consensus       470 ~~~~---~~~~--------~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~~~~~~~--~~~~~~~~~v~~~~~s~~~-~  535 (602)
                      ..+.   ..+.        .-.....+++++|+++.++.|+.||.|+||.+....+.  .....|.++|+++++|||+ +
T Consensus       422 v~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~y  501 (603)
T KOG0318|consen  422 VACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAY  501 (603)
T ss_pred             EEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcE
Confidence            0000   0011        12345678999999999999999999999999876543  4556799999999999999 9


Q ss_pred             EEEeeCCCcEEEeecCCCCceeeeecccccceEEEEecCCcEEEEEECCCCCeEEEeccCCeEEee
Q psy12697        536 FASCSTDQHIHVCKLHSDKPVKSFEGHTTGQLVHSYKGTGGIFEVCWNSRGDKVGASASDGSVFKN  601 (602)
Q Consensus       536 l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~v~i~  601 (602)
                      ||+|...+.+.+||+.+.+.....-.          -+...|.+|+|+|+..++|+|+-|-+|.|.
T Consensus       502 la~~Da~rkvv~yd~~s~~~~~~~w~----------FHtakI~~~aWsP~n~~vATGSlDt~Viiy  557 (603)
T KOG0318|consen  502 LAAGDASRKVVLYDVASREVKTNRWA----------FHTAKINCVAWSPNNKLVATGSLDTNVIIY  557 (603)
T ss_pred             EEEeccCCcEEEEEcccCceecceee----------eeeeeEEEEEeCCCceEEEeccccceEEEE
Confidence            99999999999999988765221111          124789999999999999999999998874

>KOG0319|consensus

Probab=100.00  E-value=1.9e-50  Score=378.02  Aligned_cols=439  Identities=21%  Similarity=0.341  Sum_probs=359.7

Q ss_pred             eccceeeeecccceeeeeeec-cCCceEEEEECCCCCeEEEeeCCceEEEEecCCceeEEEeecc-CceEEEEeCCCCCC
Q psy12697        118 HRLTLPLWDVERGECLNTLTR-HTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKGT-GGIFEVCWNSRGTP  195 (602)
Q Consensus       118 ~~~~i~vwd~~~~~~~~~l~~-h~~~V~~~~~s~d~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~  195 (602)
                      +..-+++|++++++.++.++. |++||.-++|+|.|.+|++|+.|+.|+|||+..+.+.+.|+++ +.+..+.|.|+-+.
T Consensus        82 rs~llrv~~L~tgk~irswKa~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~~th~fkG~gGvVssl~F~~~~~~  161 (775)
T KOG0319|consen   82 RSQLLRVWSLPTGKLIRSWKAIHEAPVITMAFDPTGTLLATGGADGRVKVWDIKNGYCTHSFKGHGGVVSSLLFHPHWNR  161 (775)
T ss_pred             ccceEEEEEcccchHhHhHhhccCCCeEEEEEcCCCceEEeccccceEEEEEeeCCEEEEEecCCCceEEEEEeCCccch
Confidence            346789999999999999998 9999999999999999999999999999999999999999995 55678899988776


Q ss_pred             CCCCCCcc--cccccccc--CCcceEeeCCCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCccceEEEEE---
Q psy12697        196 PNPPESME--VDASIEIP--QSKATKLIGHESEVFICAWNPVKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRH---  268 (602)
Q Consensus       196 ~~~~~~~~--~~~~~~~~--~~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~---  268 (602)
                      ........  ....+++.  ......+..|.+.|++++|++|+..++++++|..+.+||+.+.+.....+.......   
T Consensus       162 ~lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~  241 (775)
T KOG0319|consen  162 WLLASGATDGTVRVWNLNDKRTCLHTMILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESVVR  241 (775)
T ss_pred             hheeecCCCceEEEEEcccCchHHHHHHhhhhheeeeeeccCCceEEEeccCcEEEEeehhhhhhhheechhhheeeEEE
Confidence            33322222  22223332  223667889999999999999999999999999999999965443321111100000   


Q ss_pred             -----------EecC-----------------------------------------------------------CCcccC
Q psy12697        269 -----------CISK-----------------------------------------------------------GGTEVP  278 (602)
Q Consensus       269 -----------~~~~-----------------------------------------------------------~~~~~~  278 (602)
                                 .+..                                                           ......
T Consensus       242 l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG  321 (775)
T KOG0319|consen  242 LREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVG  321 (775)
T ss_pred             echhcCCcceEEEEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcC
Confidence                       0000                                                           000112


Q ss_pred             CCCceeEEee-CCCCCeEEEEeCCCeEEEEcCCCcceeecccccCCeEEEEEccCCCEEEEEecCCcEEEEeCCCC----
Q psy12697        279 SNKDVTSLDW-NNNGSFLATGSYDGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASG----  353 (602)
Q Consensus       279 ~~~~i~~~~~-~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~~----  353 (602)
                      .+..|..++| .|+.+++++++..+.+++|+..+.....+.+|...|.++....+|.+|++++.|.++++|.++.+    
T Consensus       322 ~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~  401 (775)
T KOG0319|consen  322 YNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKS  401 (775)
T ss_pred             CchhheeeeecCCccceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchh
Confidence            3456777776 56778999999999999999988888899999999999996667889999999999999977443    


Q ss_pred             ceeEEeeeccCCeeeeeccCC--CeEEEeeCCCeEEEEEcCCCce-----e----eEeccCCCCeEEEEECCCCCEEEEE
Q psy12697        354 QCEQQFSFHSAPALDVDWQSN--TSFASCSTDQHIHVCKLHSDKP-----V----KSFEGHTNEVNAIKWDPQGLLLASC  422 (602)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~i~i~d~~~~~~-----~----~~~~~~~~~i~~~~~~~~~~~l~~~  422 (602)
                      .++....+|...+.+++.+..  ..|++++.|+++++|++...+.     .    .....|...|++++++|+.+++|||
T Consensus       402 ~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~  481 (775)
T KOG0319|consen  402 LCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATG  481 (775)
T ss_pred             hhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEec
Confidence            345567889999999998665  4599999999999999976321     1    1335799999999999999999999


Q ss_pred             ECCCeEEEEeCCCCeeeEeeccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCCC
Q psy12697        423 SDDMTLKIWSLDKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDK  502 (602)
Q Consensus       423 ~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg  502 (602)
                      |.|.+.+||++.......++.+|                                  ...|.++.|+|..+.++|+|.|+
T Consensus       482 SqDktaKiW~le~~~l~~vLsGH----------------------------------~RGvw~V~Fs~~dq~laT~SgD~  527 (775)
T KOG0319|consen  482 SQDKTAKIWDLEQLRLLGVLSGH----------------------------------TRGVWCVSFSKNDQLLATCSGDK  527 (775)
T ss_pred             ccccceeeecccCceEEEEeeCC----------------------------------ccceEEEEeccccceeEeccCCc
Confidence            99999999999987777777665                                  55555666666778999999999


Q ss_pred             eEEEEeCCCCceeeeecccCCCeeEeeecCCc-eEEEeeCCCcEEEeecCCCCceeeeecccccceEEEEecCCcEEEEE
Q psy12697        503 TTIIWDAASGQCEQQFSFHSAPALDVDWQSNT-SFASCSTDQHIHVCKLHSDKPVKSFEGHTTGQLVHSYKGTGGIFEVC  581 (602)
Q Consensus       503 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~-~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~  581 (602)
                      +|+||.+.+..|+++|.+|...|..+.|-.++ .|++++.||-|++|++++..+++++..|.           ..|++++
T Consensus       528 TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD~H~-----------DrvWaL~  596 (775)
T KOG0319|consen  528 TVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLDAHN-----------DRVWALS  596 (775)
T ss_pred             eEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhhhcc-----------ceeEEEe
Confidence            99999999999999999999999999999999 99999999999999999999999999997           7799999


Q ss_pred             ECCCCCeEEEeccCCeEEee
Q psy12697        582 WNSRGDKVGASASDGSVFKN  601 (602)
Q Consensus       582 ~spdg~~l~~~~~dg~v~i~  601 (602)
                      -+|++.++++|+.||.|.++
T Consensus       597 ~~~~~~~~~tgg~Dg~i~~w  616 (775)
T KOG0319|consen  597 VSPLLDMFVTGGGDGRIIFW  616 (775)
T ss_pred             ecCccceeEecCCCeEEEEe
Confidence            99999999999999998764

>KOG0291|consensus

Probab=100.00  E-value=1.6e-45  Score=345.54  Aligned_cols=456  Identities=17%  Similarity=0.265  Sum_probs=379.5

Q ss_pred             cceeeeecccceeeeeeeccCCceEEEEECCCCCeEEEeeCCceEEEEecCCceeEEEeeccCceEEEEeCCCCCCCCCC
Q psy12697        120 LTLPLWDVERGECLNTLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKGTGGIFEVCWNSRGTPPNPP  199 (602)
Q Consensus       120 ~~i~vwd~~~~~~~~~l~~h~~~V~~~~~s~d~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (602)
                      +.|.|+|+.+.+....--.+...|++++.||+|.+|++....|...+-++.....++.+....++.++.|+|+|..++..
T Consensus        35 Nrvsv~dLknN~S~Tl~~e~~~NI~~ialSp~g~lllavdE~g~~~lvs~~~r~Vlh~f~fk~~v~~i~fSPng~~fav~  114 (893)
T KOG0291|consen   35 NRVSVFDLKNNKSYTLPLETRYNITRIALSPDGTLLLAVDERGRALLVSLLSRSVLHRFNFKRGVGAIKFSPNGKFFAVG  114 (893)
T ss_pred             CEEEEEEccCCcceeEEeecCCceEEEEeCCCceEEEEEcCCCcEEEEecccceeeEEEeecCccceEEECCCCcEEEEE
Confidence            46889999887776666678999999999999999999999999999999999999999999999999999999877665


Q ss_pred             CCcccccc-----c---cccCCcceEeeCCCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCccceEEEEEEec
Q psy12697        200 ESMEVDAS-----I---EIPQSKATKLIGHESEVFICAWNPVKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCIS  271 (602)
Q Consensus       200 ~~~~~~~~-----~---~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~  271 (602)
                      ........     +   ..+-...++..+|...|.++.|+.|.++|++|+.|.++++|.++..+.....           
T Consensus       115 ~gn~lqiw~~P~~~~~~~~pFvl~r~~~g~fddi~si~Ws~DSr~l~~gsrD~s~rl~~v~~~k~~~~~-----------  183 (893)
T KOG0291|consen  115 CGNLLQIWHAPGEIKNEFNPFVLHRTYLGHFDDITSIDWSDDSRLLVTGSRDLSARLFGVDGNKNLFTY-----------  183 (893)
T ss_pred             ecceeEEEecCcchhcccCcceEeeeecCCccceeEEEeccCCceEEeccccceEEEEEeccccccceE-----------
Confidence            54332111     1   1123344677899999999999999999999999999999999876542111           


Q ss_pred             CCCcccCCCCceeEEeeCCCCCeEEEEeCCCeEEEEcCC------------------------Ccc-----------eee
Q psy12697        272 KGGTEVPSNKDVTSLDWNNNGSFLATGSYDGYARIWTSD------------------------GSL-----------KST  316 (602)
Q Consensus       272 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~------------------------~~~-----------~~~  316 (602)
                         ....|...|.+.-|..+...+++.+.||.+.+|..+                        ++.           ..-
T Consensus       184 ---~l~gHkd~VvacfF~~~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~  260 (893)
T KOG0291|consen  184 ---ALNGHKDYVVACFFGANSLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHY  260 (893)
T ss_pred             ---eccCCCcceEEEEeccCcceEEEEecCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeee
Confidence               123467889999999999999999999999999754                        111           011


Q ss_pred             cccccCCeEEEEEccCCCEEEEEecCCcEEEEeCCCCceeEEeeeccCCeeeeeccCCCe-EEEeeCC-CeEEEEEcCCC
Q psy12697        317 LGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTS-FASCSTD-QHIHVCKLHSD  394 (602)
Q Consensus       317 ~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~i~i~d~~~~  394 (602)
                      +......+++.+|++..+.|+++-..|...+|++....++..+.....++..+.|+..+. ++.|+.. |.+.+|+..+.
T Consensus       261 ln~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsE  340 (893)
T KOG0291|consen  261 LNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSE  340 (893)
T ss_pred             ecccccceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeecc
Confidence            122336799999999999999999999999999999999999999999999999986544 5555544 79999999999


Q ss_pred             ceeeEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeeeEeeccccccEEEEEECCCCCCCCCCCcceeee---
Q psy12697        395 KPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFI---  471 (602)
Q Consensus       395 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~---  471 (602)
                      ..+.+.++|...+++++++|||+++|+|++||.|+|||..++-|+.++..|.+.++.+.|+..+..+..........   
T Consensus       341 sYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwD  420 (893)
T KOG0291|consen  341 SYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWD  420 (893)
T ss_pred             ceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeee
Confidence            99999999999999999999999999999999999999999999999999999999999999887654333222111   


Q ss_pred             ------eeeccCCccCCeEEEEEccCCCEEEEEeCCC-eEEEEeCCCCceeeeecccCCCeeEeeecCCc-eEEEeeCCC
Q psy12697        472 ------LKSTLGQHKGPIFALKWNKRGNYILSAGVDK-TTIIWDAASGQCEQQFSFHSAPALDVDWQSNT-SFASCSTDQ  543 (602)
Q Consensus       472 ------~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg-~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~-~l~~~~~d~  543 (602)
                            ++.-.........|++..|.|.++.+|+.|. .|.+|++.+|+++..+.+|.+||.+++|+|++ .|++++.|.
T Consensus       421 lkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDk  500 (893)
T KOG0291|consen  421 LKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDK  500 (893)
T ss_pred             ecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccc
Confidence                  1111223445667899999999999999886 69999999999999999999999999999999 999999999


Q ss_pred             cEEEeecCCCCceeeeecccccceEEEEecCCcEEEEEECCCCCeEEEeccCCeEEe
Q psy12697        544 HIHVCKLHSDKPVKSFEGHTTGQLVHSYKGTGGIFEVCWNSRGDKVGASASDGSVFK  600 (602)
Q Consensus       544 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~v~i  600 (602)
                      +|++||+-.           ......++.....+..++|+|||+.||+++-||.|.+
T Consensus       501 TVRiW~if~-----------s~~~vEtl~i~sdvl~vsfrPdG~elaVaTldgqItf  546 (893)
T KOG0291|consen  501 TVRIWDIFS-----------SSGTVETLEIRSDVLAVSFRPDGKELAVATLDGQITF  546 (893)
T ss_pred             eEEEEEeec-----------cCceeeeEeeccceeEEEEcCCCCeEEEEEecceEEE
Confidence            999999833           3334555666678999999999999999999998865

>KOG0306|consensus

Probab=100.00  E-value=1.1e-46  Score=353.11  Aligned_cols=417  Identities=19%  Similarity=0.322  Sum_probs=339.7

Q ss_pred             ccCCcceeccceeeeecccceeeeeeeccCCceEEEEECCCCCeEEEeeCCceEEEEecCCceeEEEeeccCceEEEEeC
Q psy12697        111 ITNGEEVHRLTLPLWDVERGECLNTLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKGTGGIFEVCWN  190 (602)
Q Consensus       111 ~~~~~~~~~~~i~vwd~~~~~~~~~l~~h~~~V~~~~~s~d~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~  190 (602)
                      ++.|.  .++.|+||+..++...-++.||..+|+++.|+..|..|||||.|+.|.+||+-.-.-+               
T Consensus        80 lAVGY--aDGsVqif~~~s~~~~~tfngHK~AVt~l~fd~~G~rlaSGskDt~IIvwDlV~E~Gl---------------  142 (888)
T KOG0306|consen   80 LAVGY--ADGSVQIFSLESEEILITFNGHKAAVTTLKFDKIGTRLASGSKDTDIIVWDLVGEEGL---------------  142 (888)
T ss_pred             EEEEe--cCceEEeeccCCCceeeeecccccceEEEEEcccCceEeecCCCccEEEEEeccceee---------------
Confidence            34444  4789999999999999999999999999999999999999999999999998654443               


Q ss_pred             CCCCCCCCCCCccccccccccCCcceEeeCCCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCccceEEEEEEe
Q psy12697        191 SRGTPPNPPESMEVDASIEIPQSKATKLIGHESEVFICAWNPVKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCI  270 (602)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~  270 (602)
                                               ..+.||...|+..-|..+.+++++.+.|+.|++||+++..+....          
T Consensus       143 -------------------------~rL~GHkd~iT~~~F~~~~~~lvS~sKDs~iK~WdL~tqhCf~Th----------  187 (888)
T KOG0306|consen  143 -------------------------FRLRGHKDSITQALFLNGDSFLVSVSKDSMIKFWDLETQHCFETH----------  187 (888)
T ss_pred             -------------------------EEeecchHHHhHHhccCCCeEEEEeccCceEEEEecccceeeeEE----------
Confidence                                     567889999999999998999999999999999999987654321          


Q ss_pred             cCCCcccCCCCceeEEeeCCCCCeEEEEeC--------------------------------------------------
Q psy12697        271 SKGGTEVPSNKDVTSLDWNNNGSFLATGSY--------------------------------------------------  300 (602)
Q Consensus       271 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~--------------------------------------------------  300 (602)
                            ..|.+.+.++++.+  +.+++++.                                                  
T Consensus       188 ------vd~r~Eiw~l~~~~--~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r~~  259 (888)
T KOG0306|consen  188 ------VDHRGEIWALVLDE--KLLVTAGTDSELKVWELAFEDDEKETNRYISTKLRGTFIRQSKGREINLVTDFSDRFL  259 (888)
T ss_pred             ------ecccceEEEEEEec--ceEEEEecCCceEEEEeecccccccccccceeeccceeeeccCCceeEEeecCcccEE
Confidence                  11223333333333  23333333                                                  


Q ss_pred             --------------------------------------------------------------------------------
Q psy12697        301 --------------------------------------------------------------------------------  300 (602)
Q Consensus       301 --------------------------------------------------------------------------------  300 (602)
                                                                                                      
T Consensus       260 ~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv  339 (888)
T KOG0306|consen  260 VCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIRTSAKIKSFDVTPSGGTENTLV  339 (888)
T ss_pred             EEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHheechhheeEEEEEecCCcceeEE
Confidence                                                                                            


Q ss_pred             ---CCeEEEEcCCC-cc---------eeecccccCCeEEEEEccCCCEEEEEecCCcEEEEeCCCCceeEEeeeccCCee
Q psy12697        301 ---DGYARIWTSDG-SL---------KSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPAL  367 (602)
Q Consensus       301 ---dg~i~i~~~~~-~~---------~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~  367 (602)
                         ++.+..|.++. ..         ...+.+|...|.++++|.+...++++ ..+++++|+..+.++++++...  .+.
T Consensus       340 ~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~~~~~Sg-a~~SikiWn~~t~kciRTi~~~--y~l  416 (888)
T KOG0306|consen  340 LLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSDSILLASG-AGESIKIWNRDTLKCIRTITCG--YIL  416 (888)
T ss_pred             EeecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeecCceeeeec-CCCcEEEEEccCcceeEEeccc--cEE
Confidence               33444443321 00         02344688889999999887655555 4678999999999999988755  777


Q ss_pred             eeeccCC-CeEEEeeCCCeEEEEEcCCCceeeEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEeCCC-----CeeeE-
Q psy12697        368 DVDWQSN-TSFASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDK-----DNCVH-  440 (602)
Q Consensus       368 ~~~~~~~-~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~-----~~~~~-  440 (602)
                      +..|.|+ ..+++|..+|.+.+||+.+...+.++++|.+.|.+++.+||++.+++||.|.+|++||..-     +...+ 
T Consensus       417 ~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~  496 (888)
T KOG0306|consen  417 ASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKV  496 (888)
T ss_pred             EEEecCCCceEEEeccCCceEEEEeehhhhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCccccee
Confidence            8888886 5588899999999999999999999999999999999999999999999999999999742     11111 


Q ss_pred             -e-----eccccccEEEEEECCCCCCCCCCCcce---ee-----eeeeccCCccCCeEEEEEccCCCEEEEEeCCCeEEE
Q psy12697        441 -D-----LQAHNKEIYTIKWSPTGPETSNPNMSL---IF-----ILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTII  506 (602)
Q Consensus       441 -~-----~~~~~~~i~~~~~~~~~~~~~~~~~~~---~~-----~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~i  506 (602)
                       .     .-.-...+.++.+|||+..++.+-.+.   ++     .+...+.+|.-||.|+.+|||+++++||+.|..|+|
T Consensus       497 lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKi  576 (888)
T KOG0306|consen  497 LSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKI  576 (888)
T ss_pred             eeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEE
Confidence             1     112356799999999999876653332   11     234578899999999999999999999999999999


Q ss_pred             EeCCCCceeeeecccCCCeeEeeecCCc-eEEEeeCCCcEEEeecCCCCceeeeecccccceEEEEecCCcEEEEEECCC
Q psy12697        507 WDAASGQCEQQFSFHSAPALDVDWQSNT-SFASCSTDQHIHVCKLHSDKPVKSFEGHTTGQLVHSYKGTGGIFEVCWNSR  585 (602)
Q Consensus       507 wd~~~~~~~~~~~~~~~~v~~~~~s~~~-~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd  585 (602)
                      |-+.-|.|-..+-+|.+.|.++.|-|.. .++++|.|+.|+-||-+.-+.++.+++|.           ..|++++.+|+
T Consensus       577 WGLdFGDCHKS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~-----------~ev~cLav~~~  645 (888)
T KOG0306|consen  577 WGLDFGDCHKSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHH-----------SEVWCLAVSPN  645 (888)
T ss_pred             eccccchhhhhhhcccCceeEEEEcccceeEEEecCcceEEeechhhhhhheeeccch-----------heeeeeEEcCC
Confidence            9999999999999999999999999998 99999999999999998889999998886           78999999999


Q ss_pred             CCeEEEeccCCeEEee
Q psy12697        586 GDKVGASASDGSVFKN  601 (602)
Q Consensus       586 g~~l~~~~~dg~v~i~  601 (602)
                      |.++++++.|.+|+++
T Consensus       646 G~~vvs~shD~sIRlw  661 (888)
T KOG0306|consen  646 GSFVVSSSHDKSIRLW  661 (888)
T ss_pred             CCeEEeccCCceeEee
Confidence            9999999999999875

>KOG0291|consensus

Probab=100.00  E-value=1e-44  Score=340.21  Aligned_cols=436  Identities=19%  Similarity=0.292  Sum_probs=358.6

Q ss_pred             cceeeeecccc--------eeeeeeeccCCceEEEEECCCCCeEEEeeCCceEEEEecCCceeEEEeeccCceEEEEeCC
Q psy12697        120 LTLPLWDVERG--------ECLNTLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKGTGGIFEVCWNS  191 (602)
Q Consensus       120 ~~i~vwd~~~~--------~~~~~l~~h~~~V~~~~~s~d~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~  191 (602)
                      .-+.||.....        ...+++.+|.+.|+++.|+.|.++|++|+.|.+++||+++..+.+..              
T Consensus       117 n~lqiw~~P~~~~~~~~pFvl~r~~~g~fddi~si~Ws~DSr~l~~gsrD~s~rl~~v~~~k~~~~--------------  182 (893)
T KOG0291|consen  117 NLLQIWHAPGEIKNEFNPFVLHRTYLGHFDDITSIDWSDDSRLLVTGSRDLSARLFGVDGNKNLFT--------------  182 (893)
T ss_pred             ceeEEEecCcchhcccCcceEeeeecCCccceeEEEeccCCceEEeccccceEEEEEeccccccce--------------
Confidence            45778876532        34578889999999999999999999999999999999876654322              


Q ss_pred             CCCCCCCCCCccccccccccCCcceEeeCCCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCC-------------
Q psy12697        192 RGTPPNPPESMEVDASIEIPQSKATKLIGHESEVFICAWNPVKDFLASGSGDSTARIWDMTDSTKKD-------------  258 (602)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~-------------  258 (602)
                                              ..+.+|...|..+-|..+...+++.+.||.+.+|.........             
T Consensus       183 ------------------------~~l~gHkd~VvacfF~~~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~  238 (893)
T KOG0291|consen  183 ------------------------YALNGHKDYVVACFFGANSLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDE  238 (893)
T ss_pred             ------------------------EeccCCCcceEEEEeccCcceEEEEecCceEEEEEecCCCcccccccccccccccc
Confidence                                    5578999999999999999999999999999999887221100             


Q ss_pred             -----------CccceEEEEEEecCCCcccCCCCceeEEeeCCCCCeEEEEeCCCeEEEEcCCC-cceeecccccCCeEE
Q psy12697        259 -----------PKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFLATGSYDGYARIWTSDG-SLKSTLGQHKGPIFA  326 (602)
Q Consensus       259 -----------~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~-~~~~~~~~~~~~i~~  326 (602)
                                 ........++.+      ......+++.+|++..+.|++|-..|...+|.+.+ ..+..+.-...+|..
T Consensus       239 ~~~~~~Eek~~~~~~~k~~k~~l------n~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t  312 (893)
T KOG0291|consen  239 EMDEDGEEKTHKIFWYKTKKHYL------NQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILT  312 (893)
T ss_pred             cccccchhhhcceEEEEEEeeee------cccccceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeecccceeeE
Confidence                       001111112221      12237899999999999999999999999999764 566777777789999


Q ss_pred             EEEccCCCEEEEEecC-CcEEEEeCCCCceeEEeeeccCCeeeeeccCCCe-EEEeeCCCeEEEEEcCCCceeeEeccCC
Q psy12697        327 LKWNKRGNYILSAGVD-KTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTS-FASCSTDQHIHVCKLHSDKPVKSFEGHT  404 (602)
Q Consensus       327 ~~~~~~~~~l~~~~~d-g~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~i~d~~~~~~~~~~~~~~  404 (602)
                      +.|+..|++|+.|+.. |.+.+|+..+...+...++|...+.+++++|++. +++|+.||.|++||..++-++.++..|.
T Consensus       313 ~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHt  392 (893)
T KOG0291|consen  313 VSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHT  392 (893)
T ss_pred             EEecccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCC
Confidence            9999999999988764 8999999999999999999999999999999965 7889999999999999999999999999


Q ss_pred             CCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeeeEeecccc-ccEEEEEECCCCCCCCCCCcceeee---------eee
Q psy12697        405 NEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHDLQAHN-KEIYTIKWSPTGPETSNPNMSLIFI---------LKS  474 (602)
Q Consensus       405 ~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~---------~~~  474 (602)
                      ..|+.+.|+..|+.+++.+-||+|+.||+...+..+++..+. -...+++..|.+..+..+.......         +..
T Consensus       393 s~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllD  472 (893)
T KOG0291|consen  393 SGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLD  472 (893)
T ss_pred             CceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeee
Confidence            999999999999999999999999999999999999987653 3567788888888766665544322         234


Q ss_pred             ccCCccCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCc-eeeeecccCCCeeEeeecCCc-eEEEeeCCCcEEEeecCC
Q psy12697        475 TLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQ-CEQQFSFHSAPALDVDWQSNT-SFASCSTDQHIHVCKLHS  552 (602)
Q Consensus       475 ~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~v~~~~~s~~~-~l~~~~~d~~i~iw~~~~  552 (602)
                      .+.+|++||.+++|+|++..|++++.|.+|++||+-... .+.++. +...++.++|+||| .|+++..||.|.+||.+.
T Consensus       473 iLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~-i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~  551 (893)
T KOG0291|consen  473 ILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETLE-IRSDVLAVSFRPDGKELAVATLDGQITFFDIKE  551 (893)
T ss_pred             hhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccCceeeeEe-eccceeEEEEcCCCCeEEEEEecceEEEEEhhh
Confidence            678999999999999999999999999999999986553 344444 67789999999999 999999999999999999


Q ss_pred             CCceeeeecccccceE----EEEe-----cCCcEEEEEECCCCCeEEEeccCCeEEe
Q psy12697        553 DKPVKSFEGHTTGQLV----HSYK-----GTGGIFEVCWNSRGDKVGASASDGSVFK  600 (602)
Q Consensus       553 ~~~~~~~~~~~~~~~~----~~~~-----~~~~i~~l~~spdg~~l~~~~~dg~v~i  600 (602)
                      +..+.++++..+-..-    ..+.     .....+.+++|+||..+++|+....|+|
T Consensus       552 ~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCi  608 (893)
T KOG0291|consen  552 AVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGESNSICI  608 (893)
T ss_pred             ceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEecCCcccEEE
Confidence            8888777664321110    1111     1356899999999999999999998876

>KOG0272|consensus

Probab=100.00  E-value=2.4e-47  Score=334.36  Aligned_cols=285  Identities=26%  Similarity=0.440  Sum_probs=255.4

Q ss_pred             eeeccCCceEEEEECCCCCeEEEeeCCceEEEEecCCceeEEEeeccCceEEEEeCCCCCCCCCCCCccccccccccCCc
Q psy12697        135 TLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKGTGGIFEVCWNSRGTPPNPPESMEVDASIEIPQSK  214 (602)
Q Consensus       135 ~l~~h~~~V~~~~~s~d~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  214 (602)
                      .-.|-+.+|..+.||+|++.|||||.+|.++||+..+...+                                       
T Consensus       170 SQ~gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~---------------------------------------  210 (459)
T KOG0272|consen  170 SQVGDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLL---------------------------------------  210 (459)
T ss_pred             hhccCCCcceeeEeecCCCeEEEeecCCceeEeecCCccee---------------------------------------
Confidence            33467889999999999999999999999999999988766                                       


Q ss_pred             ceEeeCCCcceEEEEEcCC--CCEEEEeeCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEeeCCCC
Q psy12697        215 ATKLIGHESEVFICAWNPV--KDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNG  292 (602)
Q Consensus       215 ~~~l~~h~~~v~~~~~~~~--~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  292 (602)
                       .++.||...|.++.|+|.  +..+++|+.||++++|++++.                                      
T Consensus       211 -~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e--------------------------------------  251 (459)
T KOG0272|consen  211 -QTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQE--------------------------------------  251 (459)
T ss_pred             -EEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCC--------------------------------------
Confidence             556789999999999996  356777777777777766533                                      


Q ss_pred             CeEEEEeCCCeEEEEcCCCcceeecccccCCeEEEEEccCCCEEEEEecCCcEEEEeCCCCceeEEeeeccCCeeeeecc
Q psy12697        293 SFLATGSYDGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQ  372 (602)
Q Consensus       293 ~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~  372 (602)
                                         ..+..+.+|...|..++|+|+|++|++++.|.+-++||++++..+....+|...+.+++|.
T Consensus       252 -------------------~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~  312 (459)
T KOG0272|consen  252 -------------------TPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQ  312 (459)
T ss_pred             -------------------cchhhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhHhhcccccccceeEec
Confidence                               2445677899999999999999999999999999999999999999999999999999999


Q ss_pred             CCCe-EEEeeCCCeEEEEEcCCCceeeEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeeeEeeccccccEEE
Q psy12697        373 SNTS-FASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHDLQAHNKEIYT  451 (602)
Q Consensus       373 ~~~~-~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~  451 (602)
                      +++. +++|+.|..-+|||+++++.+..+.+|..+|.+++|+|+|..|||||.|++++|||++....+.++.+|.+-|+.
T Consensus       313 ~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~  392 (459)
T KOG0272|consen  313 PDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQ  392 (459)
T ss_pred             CCCceeeccCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccchhhh
Confidence            9976 567888999999999999999999999999999999999999999999999999999998888888777666666


Q ss_pred             EEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeeecccCCCeeEeeec
Q psy12697        452 IKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQ  531 (602)
Q Consensus       452 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s  531 (602)
                      +.|+|.                                 .|.+|+|++.|++++||...++.+++.+.+|.+.|.++..+
T Consensus       393 Vk~~p~---------------------------------~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis  439 (459)
T KOG0272|consen  393 VKYSPQ---------------------------------EGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDIS  439 (459)
T ss_pred             eEeccc---------------------------------CCeEEEEcccCcceeeecCCCcccchhhcCCccceEEEEec
Confidence            665552                                 67899999999999999999999999999999999999999


Q ss_pred             CCc-eEEEeeCCCcEEEee
Q psy12697        532 SNT-SFASCSTDQHIHVCK  549 (602)
Q Consensus       532 ~~~-~l~~~~~d~~i~iw~  549 (602)
                      ||+ .+++++.|.++++|.
T Consensus       440 ~d~~~i~t~s~DRT~KLW~  458 (459)
T KOG0272|consen  440 PDSQAIATSSFDRTIKLWR  458 (459)
T ss_pred             cCCceEEEeccCceeeecc
Confidence            999 999999999999996

>KOG0319|consensus

Probab=100.00  E-value=1.8e-44  Score=338.06  Aligned_cols=454  Identities=22%  Similarity=0.332  Sum_probs=367.9

Q ss_pred             ceeeeeccccee-eeeee-ccCCceEEEEECCCCCeEEEeeCCceEEEEecCCceeEEEeec--cCceEEEEeCCCCCCC
Q psy12697        121 TLPLWDVERGEC-LNTLT-RHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKG--TGGIFEVCWNSRGTPP  196 (602)
Q Consensus       121 ~i~vwd~~~~~~-~~~l~-~h~~~V~~~~~s~d~~~l~s~~~d~~v~iwd~~~~~~~~~~~~--~~~~~~~~~~~~~~~~  196 (602)
                      .|.+-|+.+++. +.... .-...+++++.+||+++|++++..+-+++|++.+|+.++.++.  .+|+..++|.|.+..+
T Consensus        41 ~Vi~idv~t~~~~l~s~~~ed~d~ita~~l~~d~~~L~~a~rs~llrv~~L~tgk~irswKa~He~Pvi~ma~~~~g~Ll  120 (775)
T KOG0319|consen   41 RVIIIDVATGSIALPSGSNEDEDEITALALTPDEEVLVTASRSQLLRVWSLPTGKLIRSWKAIHEAPVITMAFDPTGTLL  120 (775)
T ss_pred             eEEEEEccCCceecccCCccchhhhheeeecCCccEEEEeeccceEEEEEcccchHhHhHhhccCCCeEEEEEcCCCceE
Confidence            477888888887 44443 3567899999999999999999999999999999999999887  7899999999999777


Q ss_pred             CCCCCcccccccccc-CCcceEeeCCCcceEEEEEcCCC--CEEEEeeCCCcEEEEeCCCCCCCCCccceEEEEEEecCC
Q psy12697        197 NPPESMEVDASIEIP-QSKATKLIGHESEVFICAWNPVK--DFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKG  273 (602)
Q Consensus       197 ~~~~~~~~~~~~~~~-~~~~~~l~~h~~~v~~~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~  273 (602)
                      ...........+++. ......+.||.+.|.++.|+|+-  ..|++|..|+++++||+.+....               .
T Consensus       121 AtggaD~~v~VWdi~~~~~th~fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~~~~tc---------------l  185 (775)
T KOG0319|consen  121 ATGGADGRVKVWDIKNGYCTHSFKGHGGVVSSLLFHPHWNRWLLASGATDGTVRVWNLNDKRTC---------------L  185 (775)
T ss_pred             EeccccceEEEEEeeCCEEEEEecCCCceEEEEEeCCccchhheeecCCCceEEEEEcccCchH---------------H
Confidence            777766666666664 44567899999999999999976  46899999999999999866530               0


Q ss_pred             CcccCCCCceeEEeeCCCCCeEEEEeCCCeEEEEcCCCcceeecccccCCeEEEEEccC-----CCEEEEEecCCcEEEE
Q psy12697        274 GTEVPSNKDVTSLDWNNNGSFLATGSYDGYARIWTSDGSLKSTLGQHKGPIFALKWNKR-----GNYILSAGVDKTTIIW  348 (602)
Q Consensus       274 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~i~~~~~~~~-----~~~l~~~~~dg~i~~w  348 (602)
                      .....|...|++++|++|+..+++++.|..+.+||+........-.-...+.++.+-++     +.++++++.+|.+++|
T Consensus       186 ~~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~  265 (775)
T KOG0319|consen  186 HTMILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESVVRLREELGGKGEYIITAGGSGVVQYW  265 (775)
T ss_pred             HHHHhhhhheeeeeeccCCceEEEeccCcEEEEeehhhhhhhheechhhheeeEEEechhcCCcceEEEEecCCceEEEE
Confidence            12234578899999999999999999999999999753222222233445666666666     6688899999999999


Q ss_pred             eCCCCceeEEee-------------------------------------------eccCCeeeeeccC--CCeEEEeeCC
Q psy12697        349 DAASGQCEQQFS-------------------------------------------FHSAPALDVDWQS--NTSFASCSTD  383 (602)
Q Consensus       349 d~~~~~~~~~~~-------------------------------------------~~~~~~~~~~~~~--~~~~~~~~~~  383 (602)
                      |.+++++.....                                           +....|.++.|..  +..++++++.
T Consensus       266 d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs  345 (775)
T KOG0319|consen  266 DSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHLAVATNS  345 (775)
T ss_pred             ecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhheeeeecCCccceEEEEeCC
Confidence            887765433221                                           1223345555543  3668999999


Q ss_pred             CeEEEEEcCCCceeeEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCC----eeeEeeccccccEEEEEECCCCC
Q psy12697        384 QHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKD----NCVHDLQAHNKEIYTIKWSPTGP  459 (602)
Q Consensus       384 ~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~----~~~~~~~~~~~~i~~~~~~~~~~  459 (602)
                      +.+++|+..+.... .+.+|...|.++....+|.+|++|+.|.++++|.++++    -++....+|.+.|.+++++..+.
T Consensus       346 ~~lr~y~~~~~~c~-ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~a  424 (775)
T KOG0319|consen  346 PELRLYTLPTSYCQ-IIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGA  424 (775)
T ss_pred             CceEEEecCCCceE-EEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCc
Confidence            99999988877654 88999999999997778899999999999999988543    34556678999999999976554


Q ss_pred             CC-CCCCcc-----------------eeeeeeeccCCccCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeeeccc
Q psy12697        460 ET-SNPNMS-----------------LIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFH  521 (602)
Q Consensus       460 ~~-~~~~~~-----------------~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~  521 (602)
                      .. +.....                 ..+....+...|...|++++++|+.+++||||.|.+.+||+++......++.+|
T Consensus       425 sffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH  504 (775)
T KOG0319|consen  425 SFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGH  504 (775)
T ss_pred             cEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCceEEEEeeCC
Confidence            32 111111                 122233355679999999999999999999999999999999999999999999


Q ss_pred             CCCeeEeeecCCc-eEEEeeCCCcEEEeecCCCCceeeeecccccceEEEEecCCcEEEEEECCCCCeEEEeccCCeEEe
Q psy12697        522 SAPALDVDWQSNT-SFASCSTDQHIHVCKLHSDKPVKSFEGHTTGQLVHSYKGTGGIFEVCWNSRGDKVGASASDGSVFK  600 (602)
Q Consensus       522 ~~~v~~~~~s~~~-~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~v~i  600 (602)
                      ...|.++.|+|.. .+++++.|++|+||.+.+..++++++||.           ..|....|-.+|+.|++++.||.++|
T Consensus       505 ~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~-----------~aVlra~F~~~~~qliS~~adGliKl  573 (775)
T KOG0319|consen  505 TRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHT-----------SAVLRASFIRNGKQLISAGADGLIKL  573 (775)
T ss_pred             ccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCcc-----------ceeEeeeeeeCCcEEEeccCCCcEEE
Confidence            9999999999999 99999999999999999999999999997           77999999999999999999999998


Q ss_pred             e
Q psy12697        601 N  601 (602)
Q Consensus       601 ~  601 (602)
                      +
T Consensus       574 W  574 (775)
T KOG0319|consen  574 W  574 (775)
T ss_pred             E
Confidence            5

>KOG0318|consensus

Probab=100.00  E-value=2.4e-43  Score=317.71  Aligned_cols=388  Identities=21%  Similarity=0.341  Sum_probs=306.5

Q ss_pred             eccceeeeecccceeeeeeeccCCceEEEEECCCCCeEEEeeCCceEEEEecCCceeEEEeeccCceEEEEeCCCCCCCC
Q psy12697        118 HRLTLPLWDVERGECLNTLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKGTGGIFEVCWNSRGTPPN  197 (602)
Q Consensus       118 ~~~~i~vwd~~~~~~~~~l~~h~~~V~~~~~s~d~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  197 (602)
                      ++.+|.+++=..-+.-.+++.|..-|.|+.|+|||.++||++.||+|.+||=.+|+.+..+..                 
T Consensus       168 dDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~-----------------  230 (603)
T KOG0318|consen  168 DDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELED-----------------  230 (603)
T ss_pred             CCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecC-----------------
Confidence            467888888777788889999999999999999999999999999999999999999977653                 


Q ss_pred             CCCCccccccccccCCcceEeeCCCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCccc
Q psy12697        198 PPESMEVDASIEIPQSKATKLIGHESEVFICAWNPVKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEV  277 (602)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (602)
                                          -.+|.+.|++++|+||+..+++++.|.+++|||+.+............            
T Consensus       231 --------------------~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~------------  278 (603)
T KOG0318|consen  231 --------------------SDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGST------------  278 (603)
T ss_pred             --------------------CCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCc------------
Confidence                                136999999999999999999999999999999998865433222111            


Q ss_pred             CCCCceeEEeeCCCCCeEEEEeCCCeEEEEcCC-CcceeecccccCCeEEEEEccCCCEEEEEecCCcEEEEeCCCCcee
Q psy12697        278 PSNKDVTSLDWNNNGSFLATGSYDGYARIWTSD-GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCE  356 (602)
Q Consensus       278 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~  356 (602)
                       -...-..+-|-  ...|++.+.+|.|.+++.. ......+.+|...|+++..+|++++|++|+.||.|.-|+..++..-
T Consensus       279 -v~dqqvG~lWq--kd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~  355 (603)
T KOG0318|consen  279 -VEDQQVGCLWQ--KDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSD  355 (603)
T ss_pred             -hhceEEEEEEe--CCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCcccc
Confidence             01233344454  5579999999999999976 5677888999999999999999999999999999999999998776


Q ss_pred             EEe-eeccCCeeeeeccCCCeEEEeeCCCeEEEEEcCCCceeeE-------------------------------eccC-
Q psy12697        357 QQF-SFHSAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKS-------------------------------FEGH-  403 (602)
Q Consensus       357 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~-------------------------------~~~~-  403 (602)
                      +.. ..|...|..++-...+.+++++.|.++++.++........                               ++.+ 
T Consensus       356 ~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~  435 (603)
T KOG0318|consen  356 RLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQT  435 (603)
T ss_pred             ccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCC
Confidence            554 6788899999988889999999999999997743211110                               1101 


Q ss_pred             -------CCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeeeEeeccccccEEEEEECCCCCCCCCCCcceeeeeeecc
Q psy12697        404 -------TNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTL  476 (602)
Q Consensus       404 -------~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  476 (602)
                             .-...+++++|++..+++|+.||.|+||.+........                                ..+
T Consensus       436 ~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee--------------------------------~~~  483 (603)
T KOG0318|consen  436 KVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEE--------------------------------AKL  483 (603)
T ss_pred             cceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcccce--------------------------------eee
Confidence                   11245566666666666666666666666654332111                                123


Q ss_pred             CCccCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCceee-eecccCCCeeEeeecCCc-eEEEeeCCCcEEEeecCCCC
Q psy12697        477 GQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQ-QFSFHSAPALDVDWQSNT-SFASCSTDQHIHVCKLHSDK  554 (602)
Q Consensus       477 ~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~~~v~~~~~s~~~-~l~~~~~d~~i~iw~~~~~~  554 (602)
                      ..|.++|+++++|||+.|||++...+.+.+||+.+++... .+..|...|.+++|+|+. ++|+|+-|-+|.||+++...
T Consensus       484 ~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~kP~  563 (603)
T KOG0318|consen  484 LEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTNRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYSVKKPA  563 (603)
T ss_pred             ecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCceecceeeeeeeeEEEEEeCCCceEEEeccccceEEEEEccChh
Confidence            3588899999999999999999999999999999887743 344599999999999999 99999999999999997653


Q ss_pred             ce-eeeecccccceEEEEecCCcEEEEEECCCCCeEEEeccCCeEEee
Q psy12697        555 PV-KSFEGHTTGQLVHSYKGTGGIFEVCWNSRGDKVGASASDGSVFKN  601 (602)
Q Consensus       555 ~~-~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~v~i~  601 (602)
                      .. .....|.           ..|+.+.|- |...|++++.|.+|+++
T Consensus       564 ~~i~iknAH~-----------~gVn~v~wl-de~tvvSsG~Da~iK~W  599 (603)
T KOG0318|consen  564 KHIIIKNAHL-----------GGVNSVAWL-DESTVVSSGQDANIKVW  599 (603)
T ss_pred             hheEeccccc-----------cCceeEEEe-cCceEEeccCcceeEEe
Confidence            32 2222333           459999997 66789999999999875

>KOG0286|consensus

Probab=100.00  E-value=3.5e-44  Score=299.71  Aligned_cols=285  Identities=22%  Similarity=0.380  Sum_probs=259.4

Q ss_pred             eEeeCCCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEeeCCCCCeE
Q psy12697        216 TKLIGHESEVFICAWNPVKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFL  295 (602)
Q Consensus       216 ~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l  295 (602)
                      +.|+||.+.|.++.|++|.+++++++.||.+.|||.-+.......+++                ...|..++|+|.|+++
T Consensus        49 r~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~----------------s~WVMtCA~sPSg~~V  112 (343)
T KOG0286|consen   49 RTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLP----------------SSWVMTCAYSPSGNFV  112 (343)
T ss_pred             EEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecC----------------ceeEEEEEECCCCCeE
Confidence            788999999999999999999999999999999998776654322222                4679999999999999


Q ss_pred             EEEeCCCeEEEEcCCC-------cceeecccccCCeEEEEEccCCCEEEEEecCCcEEEEeCCCCceeEEeeeccCCeee
Q psy12697        296 ATGSYDGYARIWTSDG-------SLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALD  368 (602)
Q Consensus       296 ~~~~~dg~i~i~~~~~-------~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~  368 (602)
                      |+|+-|+...||++..       .....+.+|.+.+.++.|.+| .+|++++.|.+..+||+++++....+.+|...|.+
T Consensus       113 AcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD-~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~s  191 (343)
T KOG0286|consen  113 ACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDD-NHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMS  191 (343)
T ss_pred             EecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcCC-CceEecCCCceEEEEEcccceEEEEecCCcccEEE
Confidence            9999999999999762       234568899999999999885 57999999999999999999999999999999999


Q ss_pred             eeccC-C-CeEEEeeCCCeEEEEEcCCCceeeEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeeeEeecccc
Q psy12697        369 VDWQS-N-TSFASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHDLQAHN  446 (602)
Q Consensus       369 ~~~~~-~-~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~  446 (602)
                      +.++| + +.|++|+.|+..++||++.+..++.|.+|+..|++++|.|+|.-+++|++|++.|+||++..+.+..+... 
T Consensus       192 lsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~-  270 (343)
T KOG0286|consen  192 LSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHD-  270 (343)
T ss_pred             EecCCCCCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccC-
Confidence            99998 3 67999999999999999999999999999999999999999999999999999999999998877766521 


Q ss_pred             ccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeeecccCCCee
Q psy12697        447 KEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPAL  526 (602)
Q Consensus       447 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~  526 (602)
                                                     ....+|++++||..|++|++|..|.++.+||.-.++.+..+.+|.+.|.
T Consensus       271 -------------------------------~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvS  319 (343)
T KOG0286|consen  271 -------------------------------SIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVS  319 (343)
T ss_pred             -------------------------------cccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEeeccCCeeE
Confidence                                           1346789999999999999999999999999999999999999999999


Q ss_pred             EeeecCCc-eEEEeeCCCcEEEee
Q psy12697        527 DVDWQSNT-SFASCSTDQHIHVCK  549 (602)
Q Consensus       527 ~~~~s~~~-~l~~~~~d~~i~iw~  549 (602)
                      ++..+||| -+++|+.|..++||.
T Consensus       320 cl~~s~DG~av~TgSWDs~lriW~  343 (343)
T KOG0286|consen  320 CLGVSPDGMAVATGSWDSTLRIWA  343 (343)
T ss_pred             EEEECCCCcEEEecchhHheeecC
Confidence            99999999 999999999999994

>KOG0272|consensus

Probab=100.00  E-value=2.5e-45  Score=321.77  Aligned_cols=278  Identities=21%  Similarity=0.356  Sum_probs=259.2

Q ss_pred             CCCceeEEeeCCCCCeEEEEeCCCeEEEEcCC-CcceeecccccCCeEEEEEccC--CCEEEEEecCCcEEEEeCCCCce
Q psy12697        279 SNKDVTSLDWNNNGSFLATGSYDGYARIWTSD-GSLKSTLGQHKGPIFALKWNKR--GNYILSAGVDKTTIIWDAASGQC  355 (602)
Q Consensus       279 ~~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~-~~~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~dg~i~~wd~~~~~~  355 (602)
                      ...+|..+.|+++++.|++|+.+|.+++|+.. .....++.+|...+.++.|+|.  +..+++++.||++++|++.+...
T Consensus       174 d~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~  253 (459)
T KOG0272|consen  174 DTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETP  253 (459)
T ss_pred             CCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcc
Confidence            36789999999999999999999999999975 6788899999999999999997  56899999999999999999999


Q ss_pred             eEEeeeccCCeeeeeccCCCe-EEEeeCCCeEEEEEcCCCceeeEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEeCC
Q psy12697        356 EQQFSFHSAPALDVDWQSNTS-FASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLD  434 (602)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~  434 (602)
                      +..+.+|...|..++|+|++. +++++.|.+-++||++++..+...+||...|.+++|.|||.++++|+.|..-+|||++
T Consensus       254 l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlR  333 (459)
T KOG0272|consen  254 LQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLR  333 (459)
T ss_pred             hhhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCccchhheeecc
Confidence            999999999999999999976 7789999999999999999999999999999999999999999999999999999999


Q ss_pred             CCeeeEeeccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCce
Q psy12697        435 KDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQC  514 (602)
Q Consensus       435 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~~~~~~  514 (602)
                      +++++..+.+|..+|                                  .+++|||+|..||||+.|++++|||++..++
T Consensus       334 tgr~im~L~gH~k~I----------------------------------~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~  379 (459)
T KOG0272|consen  334 TGRCIMFLAGHIKEI----------------------------------LSVAFSPNGYHLATGSSDNTCKVWDLRMRSE  379 (459)
T ss_pred             cCcEEEEecccccce----------------------------------eeEeECCCceEEeecCCCCcEEEeeeccccc
Confidence            999999888765555                                  4555556788999999999999999999999


Q ss_pred             eeeecccCCCeeEeeecCC-c-eEEEeeCCCcEEEeecCCCCceeeeecccccceEEEEecCCcEEEEEECCCCCeEEEe
Q psy12697        515 EQQFSFHSAPALDVDWQSN-T-SFASCSTDQHIHVCKLHSDKPVKSFEGHTTGQLVHSYKGTGGIFEVCWNSRGDKVGAS  592 (602)
Q Consensus       515 ~~~~~~~~~~v~~~~~s~~-~-~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~  592 (602)
                      +.++.+|.+-|+.++|+|+ | +|++++.|++++||.-.+..+++++.||.           +.|.++..+||+..++++
T Consensus       380 ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe-----------~kV~s~Dis~d~~~i~t~  448 (459)
T KOG0272|consen  380 LYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHE-----------GKVISLDISPDSQAIATS  448 (459)
T ss_pred             ceecccccchhhheEecccCCeEEEEcccCcceeeecCCCcccchhhcCCc-----------cceEEEEeccCCceEEEe
Confidence            9999999999999999994 4 99999999999999999999999999997           789999999999999999


Q ss_pred             ccCCeEEee
Q psy12697        593 ASDGSVFKN  601 (602)
Q Consensus       593 ~~dg~v~i~  601 (602)
                      +.|.+++++
T Consensus       449 s~DRT~KLW  457 (459)
T KOG0272|consen  449 SFDRTIKLW  457 (459)
T ss_pred             ccCceeeec
Confidence            999999985

>KOG0295|consensus

Probab=100.00  E-value=8.7e-43  Score=300.05  Aligned_cols=375  Identities=28%  Similarity=0.469  Sum_probs=303.1

Q ss_pred             ccchhhhhhhhhhhcCceeeeeccccccCCccCCC--CCCcC-CchhHHHHHHhhceeEEEeeeeCCCCccccccccccc
Q psy12697          5 SDEVNFLVYRYLQESGFQHSAYTFGIESHISQSNI--DGALV-PPAALLSIIQKGLQYTEAEISVGENGQEQRPTESLSL   81 (602)
Q Consensus         5 s~e~n~li~ryL~e~g~~~~a~~~~~e~~~~~~~~--~~~~~-~~~~li~~~qk~l~~~~~e~~~~~~~~~~~~~~~~~~   81 (602)
                      .||||+.|--|+..+||+++-..|-+|+.......  .+-.+ ....-+..+||.++..+....  +.+++-.+..    
T Consensus        10 ~~ei~~aiadl~g~n~~~es~~i~~~~~~~~~~~~~~~g~ll~kkwtSv~rlqKki~~Les~l~--~~~~el~~g~----   83 (406)
T KOG0295|consen   10 RDEINMAIADLSGSNGYSESDRIFHKEASLATEMRKKDGGLLEKKWTSVDRLQKKIRELESKLD--ETGDELIAGD----   83 (406)
T ss_pred             hHHHHHHHHhhhccccccccceeEeecCCCcccccccccceeeccccccchhHHHHHHHHhhhc--ccccccccCC----
Confidence            48999999999999999999999999988776221  22111 122344566666654432221  1111100000    


Q ss_pred             cccchhhHHHhhhhhhhccccCCCCCCCcccCCcceeccceeeeecccceeeeeeeccCCceEEEEECCCCCeEEEeeCC
Q psy12697         82 IDAVLPDFVANRQNQLNSQRTNNPSTGPAITNGEEVHRLTLPLWDVERGECLNTLTRHTEPVYSVAFSPDGKFLASGSFD  161 (602)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vwd~~~~~~~~~l~~h~~~V~~~~~s~d~~~l~s~~~d  161 (602)
                                             | .+..         ++--.| +......+.+.+|..+|+.+-|+|+-..+++++.|
T Consensus        84 -----------------------p-t~~~---------~~~~~w-ipRp~l~~~l~g~r~~vt~v~~hp~~~~v~~as~d  129 (406)
T KOG0295|consen   84 -----------------------P-TGSK---------RTPALW-IPRPNLVQKLAGHRSSVTRVIFHPSEALVVSASED  129 (406)
T ss_pred             -----------------------C-CcCc---------cChhhc-CCCCCchhhhhccccceeeeeeccCceEEEEecCC
Confidence                                   0 0000         000001 11224556778899999999999999999999999


Q ss_pred             ceEEEEecCCceeEEEeeccCceEEEEeCCCCCCCCCCCCccccccccccCCcceEeeCCCcceEEEEEcCCCCEEEEee
Q psy12697        162 KCVHIWSARTGQLVHSYKGTGGIFEVCWNSRGTPPNPPESMEVDASIEIPQSKATKLIGHESEVFICAWNPVKDFLASGS  241 (602)
Q Consensus       162 ~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~s~~  241 (602)
                      ++|++||..+|++.                                        ..+.||.+.|..++|+..|+++++++
T Consensus       130 ~tikv~D~~tg~~e----------------------------------------~~LrGHt~sv~di~~~a~Gk~l~tcS  169 (406)
T KOG0295|consen  130 ATIKVFDTETGELE----------------------------------------RSLRGHTDSVFDISFDASGKYLATCS  169 (406)
T ss_pred             ceEEEEEccchhhh----------------------------------------hhhhccccceeEEEEecCccEEEecC
Confidence            99999999999985                                        55678999999999999999999999


Q ss_pred             CCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEeeCCCCCeEEEEeCCCeEEEEcCCCcceeeccccc
Q psy12697        242 GDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFLATGSYDGYARIWTSDGSLKSTLGQHK  321 (602)
Q Consensus       242 ~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~  321 (602)
                      .|-.+++||.++..                                                        ..++.+.+|.
T Consensus       170 sDl~~~LWd~~~~~--------------------------------------------------------~c~ks~~gh~  193 (406)
T KOG0295|consen  170 SDLSAKLWDFDTFF--------------------------------------------------------RCIKSLIGHE  193 (406)
T ss_pred             CccchhheeHHHHH--------------------------------------------------------HHHHHhcCcc
Confidence            98888888875321                                                        2334556788


Q ss_pred             CCeEEEEEccCCCEEEEEecCCcEEEEeCCCCceeEEeeeccCCeeeeeccCCCe-EEEeeCCCeEEEEEcCCCceeeEe
Q psy12697        322 GPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTS-FASCSTDQHIHVCKLHSDKPVKSF  400 (602)
Q Consensus       322 ~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~i~d~~~~~~~~~~  400 (602)
                      ..|.+++|-|.|+++++++.|.+|+.|++.++.++.++..|...+..+....++. +++++.|.++++|-+.+++....+
T Consensus       194 h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~l  273 (406)
T KOG0295|consen  194 HGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAEL  273 (406)
T ss_pred             cceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhh
Confidence            8999999999999999999999999999999999999999999999999888865 778899999999999999988999


Q ss_pred             ccCCCCeEEEEECCC---------------CCEEEEEECCCeEEEEeCCCCeeeEeeccccccEEEEEECCCCCCCCCCC
Q psy12697        401 EGHTNEVNAIKWDPQ---------------GLLLASCSDDMTLKIWSLDKDNCVHDLQAHNKEIYTIKWSPTGPETSNPN  465 (602)
Q Consensus       401 ~~~~~~i~~~~~~~~---------------~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~  465 (602)
                      ..|+.+|.+++|-|.               ++++.+++.|++|++||+.++.++.++.+|                    
T Consensus       274 R~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~gh--------------------  333 (406)
T KOG0295|consen  274 REHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGH--------------------  333 (406)
T ss_pred             hccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecc--------------------
Confidence            999999999999873               359999999999999999999999888764                    


Q ss_pred             cceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeeecccCCCeeEeeecCCc-eEEEeeCCCc
Q psy12697        466 MSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNT-SFASCSTDQH  544 (602)
Q Consensus       466 ~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~-~l~~~~~d~~  544 (602)
                                    ...|..++|+|.|+||+++.+|+++++||+.++++...+..|..-++++.|+.+. ++++|+-|..
T Consensus       334 --------------dnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt  399 (406)
T KOG0295|consen  334 --------------DNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHKTAPYVVTGSVDQT  399 (406)
T ss_pred             --------------cceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEecCCCCceEEeccccce
Confidence                          5566666777789999999999999999999999999999999999999999998 9999999999


Q ss_pred             EEEee
Q psy12697        545 IHVCK  549 (602)
Q Consensus       545 i~iw~  549 (602)
                      +++|.
T Consensus       400 ~KvwE  404 (406)
T KOG0295|consen  400 VKVWE  404 (406)
T ss_pred             eeeee
Confidence            99997

>KOG0306|consensus

Probab=100.00  E-value=3.8e-41  Score=316.04  Aligned_cols=410  Identities=20%  Similarity=0.288  Sum_probs=340.5

Q ss_pred             cceeeeecccceeeeeeec--cCCceEEEEECCCCCeEEEeeCCceEEEEecCCceeEEEeeccCceEEEEeCCCCCCCC
Q psy12697        120 LTLPLWDVERGECLNTLTR--HTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKGTGGIFEVCWNSRGTPPN  197 (602)
Q Consensus       120 ~~i~vwd~~~~~~~~~l~~--h~~~V~~~~~s~d~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  197 (602)
                      ..|.+||+.+|+..+.+..  -...|+|+.-+||.-+||.|..||.|+||+..++...                      
T Consensus        43 E~vn~WdlRtge~~~~l~~~~~k~evt~l~~~~d~l~lAVGYaDGsVqif~~~s~~~~----------------------  100 (888)
T KOG0306|consen   43 EQVNIWDLRTGEIEKKLILLKKKAEVTCLRSSDDILLLAVGYADGSVQIFSLESEEIL----------------------  100 (888)
T ss_pred             ccEeEEeeecchhhhhhhhhcccceEEEeeccCCcceEEEEecCceEEeeccCCCcee----------------------
Confidence            4688999999977666543  4468999999999999999999999999999887655                      


Q ss_pred             CCCCccccccccccCCcceEeeCCCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCccc
Q psy12697        198 PPESMEVDASIEIPQSKATKLIGHESEVFICAWNPVKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEV  277 (602)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (602)
                                        .++.||...|+++.|...|..|++|+.|+.|.+||+-......                ...
T Consensus       101 ------------------~tfngHK~AVt~l~fd~~G~rlaSGskDt~IIvwDlV~E~Gl~----------------rL~  146 (888)
T KOG0306|consen  101 ------------------ITFNGHKAAVTTLKFDKIGTRLASGSKDTDIIVWDLVGEEGLF----------------RLR  146 (888)
T ss_pred             ------------------eeecccccceEEEEEcccCceEeecCCCccEEEEEeccceeeE----------------Eee
Confidence                              4567899999999999999999999999999999986543211                122


Q ss_pred             CCCCceeEEeeCCCCCeEEEEeCCCeEEEEcCCC-cceeecccccCCeEEEEEccCCCEEEEEecCCcEEEEeCCC----
Q psy12697        278 PSNKDVTSLDWNNNGSFLATGSYDGYARIWTSDG-SLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAAS----  352 (602)
Q Consensus       278 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~----  352 (602)
                      .|...|+.+-|..+.+++++.+.|+.|++||+.. .+..+...|.+.+..+++.+  +.+++++.|+.+++|++..    
T Consensus       147 GHkd~iT~~~F~~~~~~lvS~sKDs~iK~WdL~tqhCf~Thvd~r~Eiw~l~~~~--~~lvt~~~dse~~v~~L~~~~D~  224 (888)
T KOG0306|consen  147 GHKDSITQALFLNGDSFLVSVSKDSMIKFWDLETQHCFETHVDHRGEIWALVLDE--KLLVTAGTDSELKVWELAFEDDE  224 (888)
T ss_pred             cchHHHhHHhccCCCeEEEEeccCceEEEEecccceeeeEEecccceEEEEEEec--ceEEEEecCCceEEEEeeccccc
Confidence            4578899999999889999999999999999984 56677788999999999987  6899999999999998710    


Q ss_pred             --------------------CceeE-------------------------------------------------------
Q psy12697        353 --------------------GQCEQ-------------------------------------------------------  357 (602)
Q Consensus       353 --------------------~~~~~-------------------------------------------------------  357 (602)
                                          ++.+.                                                       
T Consensus       225 ~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~  304 (888)
T KOG0306|consen  225 KETNRYISTKLRGTFIRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVE  304 (888)
T ss_pred             ccccccceeeccceeeeccCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchh
Confidence                                00000                                                       


Q ss_pred             ---------------------------------------------------------------EeeeccCCeeeeeccCC
Q psy12697        358 ---------------------------------------------------------------QFSFHSAPALDVDWQSN  374 (602)
Q Consensus       358 ---------------------------------------------------------------~~~~~~~~~~~~~~~~~  374 (602)
                                                                                     .+.+|...|..++++.+
T Consensus       305 ~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d  384 (888)
T KOG0306|consen  305 KSLSDEIKRLETIRTSAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSD  384 (888)
T ss_pred             hhHHHHHHHHHheechhheeEEEEEecCCcceeEEEeecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeecC
Confidence                                                                           00011122444555556


Q ss_pred             CeEEEeeCCCeEEEEEcCCCceeeEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeeeEeeccccccEEEEEE
Q psy12697        375 TSFASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHDLQAHNKEIYTIKW  454 (602)
Q Consensus       375 ~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~  454 (602)
                      ..++..+..+.+.+|+..+.++++++...  .+.+..|-|.++++++|...|.+.+||+.+...+.+.+.|.+.+.+++.
T Consensus       385 ~~~~~Sga~~SikiWn~~t~kciRTi~~~--y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~  462 (888)
T KOG0306|consen  385 SILLASGAGESIKIWNRDTLKCIRTITCG--YILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISL  462 (888)
T ss_pred             ceeeeecCCCcEEEEEccCcceeEEeccc--cEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhccccceeeeee
Confidence            66666777889999999999999888744  7888999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCcceeeee---ee-----------------ccCCccCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCce
Q psy12697        455 SPTGPETSNPNMSLIFIL---KS-----------------TLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQC  514 (602)
Q Consensus       455 ~~~~~~~~~~~~~~~~~~---~~-----------------~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~~~~~~  514 (602)
                      +|++.....+.......+   ..                 ..-.-...|.|+.+||||++|+.+-.|.+++||-+.+-+.
T Consensus       463 ~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKF  542 (888)
T KOG0306|consen  463 SPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKF  542 (888)
T ss_pred             cCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecceee
Confidence            999988665554442211   10                 0112356789999999999999999999999999999999


Q ss_pred             eeeecccCCCeeEeeecCCc-eEEEeeCCCcEEEeecCCCCceeeeecccccceEEEEecCCcEEEEEECCCCCeEEEec
Q psy12697        515 EQQFSFHSAPALDVDWQSNT-SFASCSTDQHIHVCKLHSDKPVKSFEGHTTGQLVHSYKGTGGIFEVCWNSRGDKVGASA  593 (602)
Q Consensus       515 ~~~~~~~~~~v~~~~~s~~~-~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~  593 (602)
                      ...+.+|.-||.|+..|||+ .++||+.|.+|+||-++-|.+-+++-+|.           ..|.++.|-|+..++++++
T Consensus       543 flsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHd-----------DSvm~V~F~P~~~~FFt~g  611 (888)
T KOG0306|consen  543 FLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHD-----------DSVMSVQFLPKTHLFFTCG  611 (888)
T ss_pred             eeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhccc-----------CceeEEEEcccceeEEEec
Confidence            99999999999999999999 99999999999999999999988888886           7799999999999999999


Q ss_pred             cCCeEEe
Q psy12697        594 SDGSVFK  600 (602)
Q Consensus       594 ~dg~v~i  600 (602)
                      .||.|+-
T Consensus       612 KD~kvKq  618 (888)
T KOG0306|consen  612 KDGKVKQ  618 (888)
T ss_pred             CcceEEe
Confidence            9999874

>KOG0296|consensus

Probab=100.00  E-value=4.5e-41  Score=289.73  Aligned_cols=328  Identities=22%  Similarity=0.362  Sum_probs=276.9

Q ss_pred             eeeeeeeccCCceEEEEECCCCCeEEEeeCCceEEEEecCCceeEEEeeccCceEEEEeCCCCCCCCCCCCccccccccc
Q psy12697        131 ECLNTLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKGTGGIFEVCWNSRGTPPNPPESMEVDASIEI  210 (602)
Q Consensus       131 ~~~~~l~~h~~~V~~~~~s~d~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (602)
                      ..+.+|..|++.|.+++.+|+.+++|||+.|....||++.+|+..                                   
T Consensus        55 dS~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~-----------------------------------   99 (399)
T KOG0296|consen   55 DSLVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFA-----------------------------------   99 (399)
T ss_pred             cceeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcce-----------------------------------
Confidence            456789999999999999999999999999999999999999865                                   


Q ss_pred             cCCcceEeeCCCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEeeCC
Q psy12697        211 PQSKATKLIGHESEVFICAWNPVKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNN  290 (602)
Q Consensus       211 ~~~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  290 (602)
                           ..+.+|...|+++.|+.+|.+||+|..+|.|+||+..++.......                ..-..+.-+.|+|
T Consensus       100 -----~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~----------------~e~~dieWl~WHp  158 (399)
T KOG0296|consen  100 -----GELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLD----------------QEVEDIEWLKWHP  158 (399)
T ss_pred             -----eEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEee----------------cccCceEEEEecc
Confidence                 4567899999999999999999999999999999998876532211                1136789999999


Q ss_pred             CCCeEEEEeCCCeEEEEcCCC-cceeecccccCCeEEEEEccCCCEEEEEecCCcEEEEeCCCCceeEEeeecc-CCeee
Q psy12697        291 NGSFLATGSYDGYARIWTSDG-SLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHS-APALD  368 (602)
Q Consensus       291 ~~~~l~~~~~dg~i~i~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~-~~~~~  368 (602)
                      .+..|++|+.||.+.+|.+.. ...+.+.+|..++++=.|.|+|+.++++..||+|++||..++.++..+.... ....+
T Consensus       159 ~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~  238 (399)
T KOG0296|consen  159 RAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPC  238 (399)
T ss_pred             cccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCc
Confidence            999999999999999999875 7888899999999999999999999999999999999999999888776433 33455


Q ss_pred             eeccCC-CeEEEeeCCCeEEEEEcCCCceeeEec--------cCCCCeEEEEEC---CCCCEEEEEECCCeEEEEeCCCC
Q psy12697        369 VDWQSN-TSFASCSTDQHIHVCKLHSDKPVKSFE--------GHTNEVNAIKWD---PQGLLLASCSDDMTLKIWSLDKD  436 (602)
Q Consensus       369 ~~~~~~-~~~~~~~~~~~i~i~d~~~~~~~~~~~--------~~~~~i~~~~~~---~~~~~l~~~~~dg~i~iwd~~~~  436 (602)
                      +.++.. ..++.|..++.+++.+..+++.+....        .+...+.++.+.   ..-.+.|+|+-||+|.|||+...
T Consensus       239 ~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~  318 (399)
T KOG0296|consen  239 ISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAAS  318 (399)
T ss_pred             cccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccc
Confidence            555554 446778888888888888887766655        344445555544   45678899999999999999876


Q ss_pred             eeeEeeccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCceee
Q psy12697        437 NCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQ  516 (602)
Q Consensus       437 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~  516 (602)
                      +..+.. .                                  |+.+|..+.|-+ ..+|++++.+|.|+.||.++|+++.
T Consensus       319 ~~R~~c-~----------------------------------he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~  362 (399)
T KOG0296|consen  319 TLRHIC-E----------------------------------HEDGVTKLKWLN-TDYLLTACANGKVRQWDARTGQLKF  362 (399)
T ss_pred             hhheec-c----------------------------------CCCceEEEEEcC-cchheeeccCceEEeeeccccceEE
Confidence            554433 2                                  445556666665 5789999999999999999999999


Q ss_pred             eecccCCCeeEeeecCCc-eEEEeeCCCcEEEeec
Q psy12697        517 QFSFHSAPALDVDWQSNT-SFASCSTDQHIHVCKL  550 (602)
Q Consensus       517 ~~~~~~~~v~~~~~s~~~-~l~~~~~d~~i~iw~~  550 (602)
                      ++.+|...|.+++++|+. ++++++.|++.+||++
T Consensus       363 ~y~GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v  397 (399)
T KOG0296|consen  363 TYTGHQMGILDFALSPQKRLVVTVSDDNTALVFEV  397 (399)
T ss_pred             EEecCchheeEEEEcCCCcEEEEecCCCeEEEEec
Confidence            999999999999999999 9999999999999985

>KOG0286|consensus

Probab=100.00  E-value=1.2e-40  Score=278.68  Aligned_cols=280  Identities=16%  Similarity=0.286  Sum_probs=253.3

Q ss_pred             cCCCCceeEEeeCCCCCeEEEEeCCCeEEEEcCC-CcceeecccccCCeEEEEEccCCCEEEEEecCCcEEEEeCCCC--
Q psy12697        277 VPSNKDVTSLDWNNNGSFLATGSYDGYARIWTSD-GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASG--  353 (602)
Q Consensus       277 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~~--  353 (602)
                      ..|...|.++.|++|.+++++++.||.+.|||.- ......+.-....|..++|+|.|+++++|+.|+...||++.+.  
T Consensus        52 kGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~  131 (343)
T KOG0286|consen   52 KGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDA  131 (343)
T ss_pred             cccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEecccccc
Confidence            4567899999999999999999999999999954 5566667777889999999999999999999999999999865  


Q ss_pred             ----ceeEEeeeccCCeeeeeccCCCeEEEeeCCCeEEEEEcCCCceeeEeccCCCCeEEEEECC-CCCEEEEEECCCeE
Q psy12697        354 ----QCEQQFSFHSAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDP-QGLLLASCSDDMTL  428 (602)
Q Consensus       354 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i  428 (602)
                          ...+.+.+|...+.+..|.+++.+++++.|.+..+||+++++.+..+.+|.+.|.+++++| +++.+++|+-|+..
T Consensus       132 ~g~~~v~r~l~gHtgylScC~f~dD~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~a  211 (343)
T KOG0286|consen  132 EGNVRVSRELAGHTGYLSCCRFLDDNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSA  211 (343)
T ss_pred             cccceeeeeecCccceeEEEEEcCCCceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEecccccce
Confidence                3456788999999999999999999999999999999999999999999999999999999 99999999999999


Q ss_pred             EEEeCCCCeeeEeeccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCCCeEEEEe
Q psy12697        429 KIWSLDKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWD  508 (602)
Q Consensus       429 ~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd  508 (602)
                      ++||++.+.++++|.+|...|                                  +++.|.|+|.-+++|++|++.++||
T Consensus       212 klWD~R~~~c~qtF~ghesDI----------------------------------Nsv~ffP~G~afatGSDD~tcRlyD  257 (343)
T KOG0286|consen  212 KLWDVRSGQCVQTFEGHESDI----------------------------------NSVRFFPSGDAFATGSDDATCRLYD  257 (343)
T ss_pred             eeeeccCcceeEeeccccccc----------------------------------ceEEEccCCCeeeecCCCceeEEEe
Confidence            999999999999888765554                                  5555555777899999999999999


Q ss_pred             CCCCceeeeeccc--CCCeeEeeecCCc-eEEEeeCCCcEEEeecCCCCceeeeecccccceEEEEecCCcEEEEEECCC
Q psy12697        509 AASGQCEQQFSFH--SAPALDVDWQSNT-SFASCSTDQHIHVCKLHSDKPVKSFEGHTTGQLVHSYKGTGGIFEVCWNSR  585 (602)
Q Consensus       509 ~~~~~~~~~~~~~--~~~v~~~~~s~~~-~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd  585 (602)
                      ++..+.+..+...  ..+|++++||..| +|++|..|.++.+||.-.++.+..+.+|.           ..|++|..+||
T Consensus       258 lRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHe-----------NRvScl~~s~D  326 (343)
T KOG0286|consen  258 LRADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHE-----------NRVSCLGVSPD  326 (343)
T ss_pred             ecCCcEEeeeccCcccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEeeccC-----------CeeEEEEECCC
Confidence            9999888887732  3479999999999 88899999999999999999999998887           78999999999


Q ss_pred             CCeEEEeccCCeEEee
Q psy12697        586 GDKVGASASDGSVFKN  601 (602)
Q Consensus       586 g~~l~~~~~dg~v~i~  601 (602)
                      |.-|++|+-|.+++|+
T Consensus       327 G~av~TgSWDs~lriW  342 (343)
T KOG0286|consen  327 GMAVATGSWDSTLRIW  342 (343)
T ss_pred             CcEEEecchhHheeec
Confidence            9999999999999986

>KOG1408|consensus

Probab=100.00  E-value=2.4e-40  Score=308.71  Aligned_cols=485  Identities=17%  Similarity=0.212  Sum_probs=365.2

Q ss_pred             CCCCCCcccCCcceeccceeeeecccceeeeeeeccCCceEEEEECCCCCeEEEeeC--CceEEEEecCCceeEEEeecc
Q psy12697        104 NPSTGPAITNGEEVHRLTLPLWDVERGECLNTLTRHTEPVYSVAFSPDGKFLASGSF--DKCVHIWSARTGQLVHSYKGT  181 (602)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~i~vwd~~~~~~~~~l~~h~~~V~~~~~s~d~~~l~s~~~--d~~v~iwd~~~~~~~~~~~~~  181 (602)
                      ....|.+++.||-++.+.++||++.....+..|..|+-.|+|++|+|.++|+++.+.  |-.|.+||++..-....-+..
T Consensus        86 fS~~GryvatGEcG~~pa~kVw~la~h~vVAEfvdHKY~vtcvaFsp~~kyvvSVGsQHDMIVnv~dWr~N~~~asnkis  165 (1080)
T KOG1408|consen   86 FSQNGRYVATGECGRTPASKVWSLAFHGVVAEFVDHKYNVTCVAFSPGNKYVVSVGSQHDMIVNVNDWRVNSSGASNKIS  165 (1080)
T ss_pred             EcCCCcEEEecccCCCccceeeeeccccchhhhhhccccceeeeecCCCcEEEeeccccceEEEhhhhhhcccccccccc
Confidence            456789999999999999999999999999999999999999999999999998775  667889999888777777777


Q ss_pred             CceEEEEeCCCCCCCCCCCCccccccc-----------cccCC------------------------c--ceEeeCC---
Q psy12697        182 GGIFEVCWNSRGTPPNPPESMEVDASI-----------EIPQS------------------------K--ATKLIGH---  221 (602)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~------------------------~--~~~l~~h---  221 (602)
                      ..+..++|+.+|.++..........+.           .++..                        .  ..+-.||   
T Consensus       166 s~Vsav~fsEdgSYfvT~gnrHvk~wyl~~~~KykdpiPl~gRs~~lg~lr~n~f~avaCg~gicAestfait~qGhLvE  245 (1080)
T KOG1408|consen  166 SVVSAVAFSEDGSYFVTSGNRHVKLWYLQIQSKYKDPIPLPGRSYFLGNLRFNEFLAVACGVGICAESTFAITAQGHLVE  245 (1080)
T ss_pred             eeEEEEEEccCCceeeeeeeeeEEEEEeeccccccCCccccchhhhccccccchhhhhhhcCcccccceEEEecccceee
Confidence            888999999999776655443322111           00000                        0  0000111   


Q ss_pred             --------------CcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCccceEEEEEEecCC--------CcccCC
Q psy12697        222 --------------ESEVFICAWNPVKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKG--------GTEVPS  279 (602)
Q Consensus       222 --------------~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~  279 (602)
                                    +....|++.+  .++++.|+.+|.|++++..+-...........+.......        ......
T Consensus       246 FSsRRLLDKWVqcRTTnAnCIcVs--~r~I~cgCa~g~vrlFnp~tL~y~~Tlpr~halg~d~a~~~q~~~~~s~~~~a~  323 (1080)
T KOG1408|consen  246 FSSRRLLDKWVQCRTTNANCICVS--SRLIACGCAKGMVRLFNPETLDYAGTLPRSHALGSDTANLSQPEPKNSESSPAI  323 (1080)
T ss_pred             echhhhhhhhhhhhccccceeeee--cceEEEeeccceeeecCcchhhhccccccccccccchhhcccccccccccCccc
Confidence                          1122344443  6789999999999999987655443322221111110000        000111


Q ss_pred             CCceeEEeeCCCCCeEEEEeCCCeEEEEcCCC----cceeecccccCCeEEEEEccC-----------CCEEEEEecCCc
Q psy12697        280 NKDVTSLDWNNNGSFLATGSYDGYARIWTSDG----SLKSTLGQHKGPIFALKWNKR-----------GNYILSAGVDKT  344 (602)
Q Consensus       280 ~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~----~~~~~~~~~~~~i~~~~~~~~-----------~~~l~~~~~dg~  344 (602)
                      -....++.|++....+.+...|..+++||++.    .....+.-|...|+.+.--|.           ...+++++.|++
T Consensus       324 fPD~IA~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~T  403 (1080)
T KOG1408|consen  324 FPDAIACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGT  403 (1080)
T ss_pred             CCceeEEEecCCCceEEEEEcCceEEEEeccccccccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCc
Confidence            12456788999999999999999999999873    223344457777887766551           134889999999


Q ss_pred             EEEEeCCCCceeEEee-------------------------------------eccCCeeeeeccCCCe-EEEeeCCCeE
Q psy12697        345 TIIWDAASGQCEQQFS-------------------------------------FHSAPALDVDWQSNTS-FASCSTDQHI  386 (602)
Q Consensus       345 i~~wd~~~~~~~~~~~-------------------------------------~~~~~~~~~~~~~~~~-~~~~~~~~~i  386 (602)
                      |++||+..+..-..+.                                     .....+.+++.+|++. +++|...|.+
T Consensus       404 IRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~Gnl  483 (1080)
T KOG1408|consen  404 IRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNL  483 (1080)
T ss_pred             EEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCce
Confidence            9999987632111100                                     0113477888899865 8888889999


Q ss_pred             EEEEcCCCceeeEeccCCCCeEEEEECC---CCCEEEEEECCCeEEEEeCCC-CeeeEeeccccccEEEEEECCCCC--C
Q psy12697        387 HVCKLHSDKPVKSFEGHTNEVNAIKWDP---QGLLLASCSDDMTLKIWSLDK-DNCVHDLQAHNKEIYTIKWSPTGP--E  460 (602)
Q Consensus       387 ~i~d~~~~~~~~~~~~~~~~i~~~~~~~---~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~i~~~~~~~~~~--~  460 (602)
                      ++|++.+.+....+++|+.+|.|+.|+.   ..++||+++.|..|++||+.. -.++.++.+|...|+++.|.-.+.  .
T Consensus       484 rVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~  563 (1080)
T KOG1408|consen  484 RVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRK  563 (1080)
T ss_pred             EEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceE
Confidence            9999999999999999999999999986   457999999999999999864 467788999999999999987762  1


Q ss_pred             -CCCCCccee-ee-----------eeeccCCccCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeeecc---cCCC
Q psy12697        461 -TSNPNMSLI-FI-----------LKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSF---HSAP  524 (602)
Q Consensus       461 -~~~~~~~~~-~~-----------~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~---~~~~  524 (602)
                       +..+....+ +.           ...+-...+..+..++..|..+++++++.|..|+|||+++|+..+.|++   |.+.
T Consensus       564 MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~  643 (1080)
T KOG1408|consen  564 MISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGD  643 (1080)
T ss_pred             EEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCc
Confidence             111111111 11           1112223457789999999999999999999999999999999999986   6677


Q ss_pred             eeEeeecCCc-eEEEeeCCCcEEEeecCCCCceeeeecccccceEEEEecCCcEEEEEECCCCCeEEEeccCCeEEee
Q psy12697        525 ALDVDWQSNT-SFASCSTDQHIHVCKLHSDKPVKSFEGHTTGQLVHSYKGTGGIFEVCWNSRGDKVGASASDGSVFKN  601 (602)
Q Consensus       525 v~~~~~s~~~-~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~v~i~  601 (602)
                      ...+...|.| ++++...|.++.++|+.+++++....||.           ..|+.+.|++|-++|++.+.||+|.|+
T Consensus       644 lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHs-----------E~VTG~kF~nDCkHlISvsgDgCIFvW  710 (1080)
T KOG1408|consen  644 LIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHS-----------EAVTGVKFLNDCKHLISVSGDGCIFVW  710 (1080)
T ss_pred             eEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcCcc-----------hheeeeeecccchhheeecCCceEEEE
Confidence            8899999999 99999999999999999999999988886           679999999999999999999999986

>KOG0279|consensus

Probab=100.00  E-value=3.2e-40  Score=274.31  Aligned_cols=288  Identities=22%  Similarity=0.310  Sum_probs=246.0

Q ss_pred             ccCCCCceeEEeeCCC-CCeEEEEeCCCeEEEEcCC------CcceeecccccCCeEEEEEccCCCEEEEEecCCcEEEE
Q psy12697        276 EVPSNKDVTSLDWNNN-GSFLATGSYDGYARIWTSD------GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIW  348 (602)
Q Consensus       276 ~~~~~~~i~~~~~~~~-~~~l~~~~~dg~i~i~~~~------~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~w  348 (602)
                      ...|.+.|+.++..+. ...+++++.|..+.+|++.      |..++.+.+|...|..+..+++|++.++++.|+.+++|
T Consensus        11 l~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlW   90 (315)
T KOG0279|consen   11 LEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLW   90 (315)
T ss_pred             ecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccceEEEE
Confidence            3457889999999886 5678899999999999965      56688899999999999999999999999999999999


Q ss_pred             eCCCCceeEEeeeccCCeeeeeccCC-CeEEEeeCCCeEEEEEcCCCceeeEecc-CCCCeEEEEECCC--CCEEEEEEC
Q psy12697        349 DAASGQCEQQFSFHSAPALDVDWQSN-TSFASCSTDQHIHVCKLHSDKPVKSFEG-HTNEVNAIKWDPQ--GLLLASCSD  424 (602)
Q Consensus       349 d~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~i~d~~~~~~~~~~~~-~~~~i~~~~~~~~--~~~l~~~~~  424 (602)
                      |+.+++..+.+.+|...+.+++++++ ..+++|+.|.+|.+|+............ +.+.|+|+.|+|+  ..+|++++.
T Consensus        91 Dl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~  170 (315)
T KOG0279|consen   91 DLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESNPIIVSASW  170 (315)
T ss_pred             EecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccC
Confidence            99999999999999999999999997 5699999999999999987655444333 3789999999997  789999999


Q ss_pred             CCeEEEEeCCCCeeeEeeccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCCCeE
Q psy12697        425 DMTLKIWSLDKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTT  504 (602)
Q Consensus       425 dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i  504 (602)
                      |++|++||+++.+....+.+                                  |.+.++.+++||||.+.++|+.||.+
T Consensus       171 DktvKvWnl~~~~l~~~~~g----------------------------------h~~~v~t~~vSpDGslcasGgkdg~~  216 (315)
T KOG0279|consen  171 DKTVKVWNLRNCQLRTTFIG----------------------------------HSGYVNTVTVSPDGSLCASGGKDGEA  216 (315)
T ss_pred             CceEEEEccCCcchhhcccc----------------------------------ccccEEEEEECCCCCEEecCCCCceE
Confidence            99999999998776665554                                  56667777778899999999999999


Q ss_pred             EEEeCCCCceeeeecccCCCeeEeeecCCceEEEeeCCCcEEEeecCCCCceeeeecccccceEEEEec-CCcEEEEEEC
Q psy12697        505 IIWDAASGQCEQQFSFHSAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEGHTTGQLVHSYKG-TGGIFEVCWN  583 (602)
Q Consensus       505 ~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~l~~s  583 (602)
                      .+||++.++.+..+. |...|.+++|+|+.+.+....+..|+|||++++..+..++....|.   ..+. .-...+++|+
T Consensus       217 ~LwdL~~~k~lysl~-a~~~v~sl~fspnrywL~~at~~sIkIwdl~~~~~v~~l~~d~~g~---s~~~~~~~clslaws  292 (315)
T KOG0279|consen  217 MLWDLNEGKNLYSLE-AFDIVNSLCFSPNRYWLCAATATSIKIWDLESKAVVEELKLDGIGP---SSKAGDPICLSLAWS  292 (315)
T ss_pred             EEEEccCCceeEecc-CCCeEeeEEecCCceeEeeccCCceEEEeccchhhhhhcccccccc---ccccCCcEEEEEEEc
Confidence            999999999988887 7899999999999966666667779999999999888776544333   1111 2235688999


Q ss_pred             CCCCeEEEeccCCeEEee
Q psy12697        584 SRGDKVGASASDGSVFKN  601 (602)
Q Consensus       584 pdg~~l~~~~~dg~v~i~  601 (602)
                      +||..|+++..|+.|++.
T Consensus       293 ~dG~tLf~g~td~~irv~  310 (315)
T KOG0279|consen  293 ADGQTLFAGYTDNVIRVW  310 (315)
T ss_pred             CCCcEEEeeecCCcEEEE
Confidence            999999999999999874

>KOG0293|consensus

Probab=100.00  E-value=3.6e-41  Score=294.55  Aligned_cols=296  Identities=23%  Similarity=0.380  Sum_probs=247.9

Q ss_pred             ceeeeeeeccCCceEEEEECCCCCeEEEeeCCceEEEEecCCceeEEEeeccCceEEEEeCCCCCCCCCCCCcccccccc
Q psy12697        130 GECLNTLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKGTGGIFEVCWNSRGTPPNPPESMEVDASIE  209 (602)
Q Consensus       130 ~~~~~~l~~h~~~V~~~~~s~d~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (602)
                      .+..+.+..|++.|+-+.||++|+||||++.|.+..||.+.....+.-                                
T Consensus       214 ~qt~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl--------------------------------  261 (519)
T KOG0293|consen  214 SQTWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKL--------------------------------  261 (519)
T ss_pred             chhhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceee--------------------------------
Confidence            345567889999999999999999999999999999999865443211                                


Q ss_pred             ccCCcceEeeCCCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEeeC
Q psy12697        210 IPQSKATKLIGHESEVFICAWNPVKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWN  289 (602)
Q Consensus       210 ~~~~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  289 (602)
                           ..++.+|..+|..+.|+||+++|++|+.|..+++||+.++.........               +...+.+++|.
T Consensus       262 -----~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~---------------~~~S~~sc~W~  321 (519)
T KOG0293|consen  262 -----KKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSG---------------LGFSVSSCAWC  321 (519)
T ss_pred             -----eeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcccC---------------cCCCcceeEEc
Confidence                 1678899999999999999999999999999999999998764322211               24678999999


Q ss_pred             CCCCeEEEEeCCCeEEEEcCCCcceeeccccc-CCeEEEEEccCCCEEEEEecCCcEEEEeCCCCceeEEeeeccCCeee
Q psy12697        290 NNGSFLATGSYDGYARIWTSDGSLKSTLGQHK-GPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALD  368 (602)
Q Consensus       290 ~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~  368 (602)
                      |||..+++|+.|+.+..||++|+......+-. ..|.+++.++||+++++.+.|..+++++.++.....           
T Consensus       322 pDg~~~V~Gs~dr~i~~wdlDgn~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~-----------  390 (519)
T KOG0293|consen  322 PDGFRFVTGSPDRTIIMWDLDGNILGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRG-----------  390 (519)
T ss_pred             cCCceeEecCCCCcEEEecCCcchhhcccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhc-----------
Confidence            99999999999999999999998877666543 569999999999999999999999999877543221           


Q ss_pred             eeccCCCeEEEeeCCCeEEEEEcCCCceeeEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeeeEeecccccc
Q psy12697        369 VDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHDLQAHNKE  448 (602)
Q Consensus       369 ~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~  448 (602)
                                                     +.....+|+++++|.+++++++.-.+..+++||+.....+..+.+|...
T Consensus       391 -------------------------------lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~  439 (519)
T KOG0293|consen  391 -------------------------------LISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQG  439 (519)
T ss_pred             -------------------------------cccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhccccc
Confidence                                           1123457999999999999999999999999999988888888777543


Q ss_pred             EEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEcc-CCCEEEEEeCCCeEEEEeCCCCceeeeecccCCCeeE
Q psy12697        449 IYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNK-RGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALD  527 (602)
Q Consensus       449 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~  527 (602)
                      -.-+                                .-+|-- +.+++++|++|+.|+||+..+|+++..+.+|...|++
T Consensus       440 ~fiI--------------------------------rSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNc  487 (519)
T KOG0293|consen  440 HFII--------------------------------RSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNC  487 (519)
T ss_pred             ceEE--------------------------------EeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeE
Confidence            2222                                122221 5578999999999999999999999999999999999


Q ss_pred             eeecCCc--eEEEeeCCCcEEEeecC
Q psy12697        528 VDWQSNT--SFASCSTDQHIHVCKLH  551 (602)
Q Consensus       528 ~~~s~~~--~l~~~~~d~~i~iw~~~  551 (602)
                      ++|+|..  ++|+++.||+|+||...
T Consensus       488 VswNP~~p~m~ASasDDgtIRIWg~~  513 (519)
T KOG0293|consen  488 VSWNPADPEMFASASDDGTIRIWGPS  513 (519)
T ss_pred             EecCCCCHHHhhccCCCCeEEEecCC
Confidence            9999988  99999999999999864

>KOG0315|consensus

Probab=100.00  E-value=4.6e-40  Score=268.67  Aligned_cols=291  Identities=23%  Similarity=0.392  Sum_probs=249.1

Q ss_pred             CCeEEEeeCCceEEEEecCCceeEEEeeccCceEEEEeCCCCCCCCCCCCccccccccccCCcceEeeCCCcceEEEEEc
Q psy12697        152 GKFLASGSFDKCVHIWSARTGQLVHSYKGTGGIFEVCWNSRGTPPNPPESMEVDASIEIPQSKATKLIGHESEVFICAWN  231 (602)
Q Consensus       152 ~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~  231 (602)
                      .-+|||+|.|.+|++|...+|.+.++++.                                        ..+.|..+...
T Consensus        10 ~viLvsA~YDhTIRfWqa~tG~C~rTiqh----------------------------------------~dsqVNrLeiT   49 (311)
T KOG0315|consen   10 PVILVSAGYDHTIRFWQALTGICSRTIQH----------------------------------------PDSQVNRLEIT   49 (311)
T ss_pred             ceEEEeccCcceeeeeehhcCeEEEEEec----------------------------------------CccceeeEEEc
Confidence            34899999999999999999999977653                                        46679999999


Q ss_pred             CCCCEEEEeeCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEeeCCCCCeEEEEeCCCeEEEEcCCC
Q psy12697        232 PVKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFLATGSYDGYARIWTSDG  311 (602)
Q Consensus       232 ~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~  311 (602)
                      |+++.||+++. -.||+||+.++.......              ...|.+.|+++.|..+|+.+++|++||.++|||++.
T Consensus        50 pdk~~LAaa~~-qhvRlyD~~S~np~Pv~t--------------~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~  114 (311)
T KOG0315|consen   50 PDKKDLAAAGN-QHVRLYDLNSNNPNPVAT--------------FEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRS  114 (311)
T ss_pred             CCcchhhhccC-CeeEEEEccCCCCCceeE--------------EeccCCceEEEEEeecCeEEEecCCCceEEEEeccC
Confidence            99999998876 579999999887642211              123468899999999999999999999999999998


Q ss_pred             cceeecccccCCeEEEEEccCCCEEEEEecCCcEEEEeCCCCceeEEee-eccCCeeeeeccCCCe-EEEeeCCCeEEEE
Q psy12697        312 SLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFS-FHSAPALDVDWQSNTS-FASCSTDQHIHVC  389 (602)
Q Consensus       312 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~i~i~  389 (602)
                      ........|..+|+++..+|+...|+++..+|.|++||+....+...+- ....++.++...+++. ++.+...|..++|
T Consensus       115 ~~~qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW  194 (311)
T KOG0315|consen  115 LSCQRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVW  194 (311)
T ss_pred             cccchhccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEE
Confidence            7777777889999999999999999999999999999999887766553 3456788888888866 5566678999999


Q ss_pred             EcCCC------ceeeEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCC-eeeEeeccccccEEEEEECCCCCCCC
Q psy12697        390 KLHSD------KPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKD-NCVHDLQAHNKEIYTIKWSPTGPETS  462 (602)
Q Consensus       390 d~~~~------~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~  462 (602)
                      ++-+.      +|+.+++.|++-+..+.+||++++||++|.|.+++||+.++. +...                      
T Consensus       195 ~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~----------------------  252 (311)
T KOG0315|consen  195 RLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLEL----------------------  252 (311)
T ss_pred             EccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCceeeEE----------------------
Confidence            98654      477889999999999999999999999999999999999876 2222                      


Q ss_pred             CCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeeecccCCCeeEeeec
Q psy12697        463 NPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQ  531 (602)
Q Consensus       463 ~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s  531 (602)
                                  .+.+|...+...+||.||+||++|+.|+.+++||++.++.++.+.+|..+..|++..
T Consensus       253 ------------~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy~gh~K~~vc~~ln  309 (311)
T KOG0315|consen  253 ------------VLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQYQGHHKAAVCVALN  309 (311)
T ss_pred             ------------EeecCCceEEeeeeccCccEEEecCCCCceeecccccCceeeecCCcccccEEEEee
Confidence                        344577788889999999999999999999999999999999999999888887754

>KOG0279|consensus

Probab=100.00  E-value=5.5e-40  Score=272.92  Aligned_cols=289  Identities=22%  Similarity=0.322  Sum_probs=243.4

Q ss_pred             eEeeCCCcceEEEEEcCCC-CEEEEeeCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEeeCCCCCe
Q psy12697        216 TKLIGHESEVFICAWNPVK-DFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSF  294 (602)
Q Consensus       216 ~~l~~h~~~v~~~~~~~~~-~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  294 (602)
                      .++.+|++.|+.++..+.+ +.+++++.|.++.+|++.......-.....           ...|...|..++.++||++
T Consensus         9 ~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~-----------~~GHsH~v~dv~~s~dg~~   77 (315)
T KOG0279|consen    9 GTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRR-----------LTGHSHFVSDVVLSSDGNF   77 (315)
T ss_pred             eeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeee-----------eeccceEecceEEccCCce
Confidence            5688999999999999975 789999999999999998764332222221           2235778999999999999


Q ss_pred             EEEEeCCCeEEEEcCC-CcceeecccccCCeEEEEEccCCCEEEEEecCCcEEEEeCCCCceeEEeeec-cCCeeeeecc
Q psy12697        295 LATGSYDGYARIWTSD-GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFH-SAPALDVDWQ  372 (602)
Q Consensus       295 l~~~~~dg~i~i~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~-~~~~~~~~~~  372 (602)
                      +++++.|+.+++||+. ++....+.+|...|.+++|++|.+.+++|+.|.+|++|++............ ...|.++.|+
T Consensus        78 alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVscvrfs  157 (315)
T KOG0279|consen   78 ALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFS  157 (315)
T ss_pred             EEeccccceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecccEEEEEecCCCcCcEEEEEEc
Confidence            9999999999999987 4788889999999999999999999999999999999998754433333332 7789999999


Q ss_pred             CCC---eEEEeeCCCeEEEEEcCCCceeeEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeeeEeeccccccE
Q psy12697        373 SNT---SFASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHDLQAHNKEI  449 (602)
Q Consensus       373 ~~~---~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i  449 (602)
                      |+.   .++.++.|+++++||+++.+....+.+|.+.++.+++||||.++++|+.||.+.+||++.++.+..+.      
T Consensus       158 P~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~------  231 (315)
T KOG0279|consen  158 PNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLE------  231 (315)
T ss_pred             CCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEecc------
Confidence            984   58999999999999999999999999999999999999999999999999999999999999877764      


Q ss_pred             EEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeeecc----c----
Q psy12697        450 YTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSF----H----  521 (602)
Q Consensus       450 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~----~----  521 (602)
                                                   |...|.+++|+|+.-+|+.+. +..|+|||++++.++..++.    .    
T Consensus       232 -----------------------------a~~~v~sl~fspnrywL~~at-~~sIkIwdl~~~~~v~~l~~d~~g~s~~~  281 (315)
T KOG0279|consen  232 -----------------------------AFDIVNSLCFSPNRYWLCAAT-ATSIKIWDLESKAVVEELKLDGIGPSSKA  281 (315)
T ss_pred             -----------------------------CCCeEeeEEecCCceeEeecc-CCceEEEeccchhhhhhcccccccccccc
Confidence                                         455667777777766666654 45599999999988876653    1    


Q ss_pred             -CCCeeEeeecCCc-eEEEeeCCCcEEEeecC
Q psy12697        522 -SAPALDVDWQSNT-SFASCSTDQHIHVCKLH  551 (602)
Q Consensus       522 -~~~v~~~~~s~~~-~l~~~~~d~~i~iw~~~  551 (602)
                       .....+++|++|| .|++|-.|+.|++|.+.
T Consensus       282 ~~~~clslaws~dG~tLf~g~td~~irv~qv~  313 (315)
T KOG0279|consen  282 GDPICLSLAWSADGQTLFAGYTDNVIRVWQVA  313 (315)
T ss_pred             CCcEEEEEEEcCCCcEEEeeecCCcEEEEEee
Confidence             2235778999999 99999999999999863

>KOG0315|consensus

Probab=100.00  E-value=1.4e-39  Score=265.92  Aligned_cols=283  Identities=20%  Similarity=0.341  Sum_probs=241.9

Q ss_pred             CEEEEeeCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEeeCCCCCeEEEEeCCCeEEEEcCC---C
Q psy12697        235 DFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFLATGSYDGYARIWTSD---G  311 (602)
Q Consensus       235 ~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~---~  311 (602)
                      -+|++++.|.+||+|...++.+.....                .....|..+...|+++.||+++. ..|++||++   .
T Consensus        11 viLvsA~YDhTIRfWqa~tG~C~rTiq----------------h~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np   73 (311)
T KOG0315|consen   11 VILVSAGYDHTIRFWQALTGICSRTIQ----------------HPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNP   73 (311)
T ss_pred             eEEEeccCcceeeeeehhcCeEEEEEe----------------cCccceeeEEEcCCcchhhhccC-CeeEEEEccCCCC
Confidence            478999999999999999987643222                12578999999999999998875 569999987   2


Q ss_pred             cceeecccccCCeEEEEEccCCCEEEEEecCCcEEEEeCCCCceeEEeeeccCCeeeeeccCC-CeEEEeeCCCeEEEEE
Q psy12697        312 SLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSN-TSFASCSTDQHIHVCK  390 (602)
Q Consensus       312 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~i~d  390 (602)
                      ..+.++.+|...|+.+.|..+|+++++|+.||+++|||++...+.+.++.. .+|.++...|+ +.+++|..+|.|++||
T Consensus        74 ~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~~~-spVn~vvlhpnQteLis~dqsg~irvWD  152 (311)
T KOG0315|consen   74 NPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQHN-SPVNTVVLHPNQTELISGDQSGNIRVWD  152 (311)
T ss_pred             CceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCcccchhccCC-CCcceEEecCCcceEEeecCCCcEEEEE
Confidence            467889999999999999999999999999999999999997777776644 89999999998 5699999999999999


Q ss_pred             cCCCceeeEecc-CCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeeeEeeccccccEEEEEECCCCCCCCCCCccee
Q psy12697        391 LHSDKPVKSFEG-HTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLI  469 (602)
Q Consensus       391 ~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  469 (602)
                      +........+.. ....|.++...|||.+|+.+...|+.++|++-+......+..                         
T Consensus       153 l~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P-------------------------  207 (311)
T KOG0315|consen  153 LGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEP-------------------------  207 (311)
T ss_pred             ccCCccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceE-------------------------
Confidence            998866555443 345799999999999999999999999999876332222211                         


Q ss_pred             eeeeeccCCccCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCC-ceeeeecccCCCeeEeeecCCc-eEEEeeCCCcEEE
Q psy12697        470 FILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASG-QCEQQFSFHSAPALDVDWQSNT-SFASCSTDQHIHV  547 (602)
Q Consensus       470 ~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~~~~s~~~-~l~~~~~d~~i~i  547 (602)
                         ...+..|.+.+..+.+|||+++||+++.|.+++||+.++. +....+.+|...+...+||.|| +|++++.|+.+++
T Consensus       208 ---~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rl  284 (311)
T KOG0315|consen  208 ---VHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARL  284 (311)
T ss_pred             ---hhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCceeeEEEeecCCceEEeeeeccCccEEEecCCCCceee
Confidence               1134568888889999999999999999999999999987 6678889999999999999999 9999999999999


Q ss_pred             eecCCCCceeeeeccc
Q psy12697        548 CKLHSDKPVKSFEGHT  563 (602)
Q Consensus       548 w~~~~~~~~~~~~~~~  563 (602)
                      |++..++.++.+.+|.
T Consensus       285 W~~~~~k~v~qy~gh~  300 (311)
T KOG0315|consen  285 WDLSAGKEVRQYQGHH  300 (311)
T ss_pred             cccccCceeeecCCcc
Confidence            9999999999988886

>KOG0273|consensus

Probab=100.00  E-value=4.1e-39  Score=286.66  Aligned_cols=338  Identities=25%  Similarity=0.527  Sum_probs=279.7

Q ss_pred             eeeccCCceEEEEECCCCC-eEEEeeCCceEEEEecCCceeEEEeeccCceEEEEeCCCCCCCCCCCCccccccccccCC
Q psy12697        135 TLTRHTEPVYSVAFSPDGK-FLASGSFDKCVHIWSARTGQLVHSYKGTGGIFEVCWNSRGTPPNPPESMEVDASIEIPQS  213 (602)
Q Consensus       135 ~l~~h~~~V~~~~~s~d~~-~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  213 (602)
                      .+..|..+|.+.+|+|-.. .|++++.|-..++|++....-..+.+.   +.                   ...+...  
T Consensus       173 kvl~~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~---~l-------------------rh~~~~~--  228 (524)
T KOG0273|consen  173 KVLRHESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQL---VL-------------------RHCIREG--  228 (524)
T ss_pred             eeccCCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhh---hh-------------------hhhhhhh--
Confidence            3334999999999999666 999999999999999875111100000   00                   0000000  


Q ss_pred             cceEeeCCCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEeeCCCCC
Q psy12697        214 KATKLIGHESEVFICAWNPVKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGS  293 (602)
Q Consensus       214 ~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  293 (602)
                        ..-......|++++|+.+|..||+|+.||.+++|+.......                 ....|.++|.++.|+..|+
T Consensus       229 --~~s~~~nkdVT~L~Wn~~G~~LatG~~~G~~riw~~~G~l~~-----------------tl~~HkgPI~slKWnk~G~  289 (524)
T KOG0273|consen  229 --GKSVPSNKDVTSLDWNNDGTLLATGSEDGEARIWNKDGNLIS-----------------TLGQHKGPIFSLKWNKKGT  289 (524)
T ss_pred             --cccCCccCCcceEEecCCCCeEEEeecCcEEEEEecCchhhh-----------------hhhccCCceEEEEEcCCCC
Confidence              000113567999999999999999999999999998765432                 2234679999999999999


Q ss_pred             eEEEEeCCCeEEEEcCC-CcceeecccccCCeEEEEEccCCCEEEEEecCCcEEEEeCCCCceeEEeeeccCCeeeeecc
Q psy12697        294 FLATGSYDGYARIWTSD-GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQ  372 (602)
Q Consensus       294 ~l~~~~~dg~i~i~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~  372 (602)
                      +|++++.||++.+||.. +.....+..|..+-.++.|-.+ ..+++++.|+.|+++.+....+..++.+|...|.++.|.
T Consensus       290 yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~-~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n  368 (524)
T KOG0273|consen  290 YILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSN-DEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWN  368 (524)
T ss_pred             EEEeccCCccEEEEeccCceEEEeeeeccCCccceEEecC-ceEeecCCCceEEEEEecCCCcceeeecccCceEEEEEC
Confidence            99999999999999964 6777778888888788899765 468999999999999999999999999999999999999


Q ss_pred             CCC-eEEEeeCCCeEEEEEcCCCceeeEeccCCCCeEEEEECCCC---------CEEEEEECCCeEEEEeCCCCeeeEee
Q psy12697        373 SNT-SFASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQG---------LLLASCSDDMTLKIWSLDKDNCVHDL  442 (602)
Q Consensus       373 ~~~-~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~---------~~l~~~~~dg~i~iwd~~~~~~~~~~  442 (602)
                      |.+ .+++++.|++++||..........+.+|...|..+.|+|.|         ..+++++.|++|++||+..+.++.++
T Consensus       369 ~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f  448 (524)
T KOG0273|consen  369 PTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTL  448 (524)
T ss_pred             CCCceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEee
Confidence            975 57899999999999999999999999999999999999965         47999999999999999999999988


Q ss_pred             ccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeeecccC
Q psy12697        443 QAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHS  522 (602)
Q Consensus       443 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~  522 (602)
                      ..|..                                  +|.+++|||+|+|+|+|+.||.|.+|+..+++..+.+.+ .
T Consensus       449 ~kH~~----------------------------------pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~-~  493 (524)
T KOG0273|consen  449 MKHQE----------------------------------PVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQG-T  493 (524)
T ss_pred             ccCCC----------------------------------ceEEEEecCCCcEEEecCCCCeeEeccccchheeEeecC-C
Confidence            76555                                  555566666889999999999999999999999999885 5


Q ss_pred             CCeeEeeecCCc-eEEEeeCCCcEEEeecC
Q psy12697        523 APALDVDWQSNT-SFASCSTDQHIHVCKLH  551 (602)
Q Consensus       523 ~~v~~~~~s~~~-~l~~~~~d~~i~iw~~~  551 (602)
                      +.|..++|+.+| .|..+-.|+.+++-|++
T Consensus       494 ~~Ifel~Wn~~G~kl~~~~sd~~vcvldlr  523 (524)
T KOG0273|consen  494 GGIFELCWNAAGDKLGACASDGSVCVLDLR  523 (524)
T ss_pred             CeEEEEEEcCCCCEEEEEecCCCceEEEec
Confidence            669999999999 99999999999999874

>KOG0263|consensus

Probab=100.00  E-value=1.4e-39  Score=308.73  Aligned_cols=314  Identities=24%  Similarity=0.411  Sum_probs=257.7

Q ss_pred             eeCCCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEeeCCCCCeEEE
Q psy12697        218 LIGHESEVFICAWNPVKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFLAT  297 (602)
Q Consensus       218 l~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~  297 (602)
                      +..-...+.|..|++|+.+||.|..|..|++|.+...+.....                        ..++-   ..+=+
T Consensus       374 ~~nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk------------------------~~~~l---~~~d~  426 (707)
T KOG0263|consen  374 FHNTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLK------------------------DASDL---SNIDT  426 (707)
T ss_pred             EEEcCCcceeEeecCCcchhhccccccEEEEEecchhhhcccc------------------------chhhh---ccccc
Confidence            3344567899999999999999999999999999765432111                        11111   11112


Q ss_pred             EeCCCeEEEEcCC-CcceeecccccCCeEEEEEccCCCEEEEEecCCcEEEEeCCCCceeEEeeeccCCeeeeeccCCCe
Q psy12697        298 GSYDGYARIWTSD-GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTS  376 (602)
Q Consensus       298 ~~~dg~i~i~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~  376 (602)
                      .+.|-.+.+.|.+ ......+.+|.++|....|+|+.++|++++.|+++++|.+.+..++-.+.+|..|+.++.|+|.+.
T Consensus       427 ~sad~~~~~~D~~~~~~~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~Gy  506 (707)
T KOG0263|consen  427 ESADVDVDMLDDDSSGTSRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGY  506 (707)
T ss_pred             cccchhhhhccccCCceeEEeecCCCceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCce
Confidence            3333335555544 445566889999999999999999999999999999999999999999999999999999999875


Q ss_pred             -EEEeeCCCeEEEEEcCCCceeeEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeeeEeeccccccEEEEEEC
Q psy12697        377 -FASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHDLQAHNKEIYTIKWS  455 (602)
Q Consensus       377 -~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~  455 (602)
                       |++++.|++-++|.....++.+.+.+|.+.|.|+.|+|+..++++||.|.+||+||+.+|..++.+.+           
T Consensus       507 YFatas~D~tArLWs~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~G-----------  575 (707)
T KOG0263|consen  507 YFATASHDQTARLWSTDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTG-----------  575 (707)
T ss_pred             EEEecCCCceeeeeecccCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecC-----------
Confidence             88999999999999999999999999999999999999999999999999999999999998887765           


Q ss_pred             CCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeeecccCCCeeEeeecCCc-
Q psy12697        456 PTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNT-  534 (602)
Q Consensus       456 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~-  534 (602)
                                             |.++|.+++|||+|++|++|+.||.|.+||+.+++++..+.+|.+.|.++.||.|| 
T Consensus       576 -----------------------H~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~  632 (707)
T KOG0263|consen  576 -----------------------HKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGN  632 (707)
T ss_pred             -----------------------CCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhhcccCceeEEEEecCCC
Confidence                                   56677777788899999999999999999999999999999999999999999999 


Q ss_pred             eEEEeeCCCcEEEeecCCCCceeee------------ecccccceEEEEec-CCcEEEEEECCCCCeEEEe
Q psy12697        535 SFASCSTDQHIHVCKLHSDKPVKSF------------EGHTTGQLVHSYKG-TGGIFEVCWNSRGDKVGAS  592 (602)
Q Consensus       535 ~l~~~~~d~~i~iw~~~~~~~~~~~------------~~~~~~~~~~~~~~-~~~i~~l~~spdg~~l~~~  592 (602)
                      .||+|+.|.+|++||+.........            +......++..+.. ..+|..|.|....-.|++|
T Consensus       633 vLasgg~DnsV~lWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llgs~~tK~tpv~~l~FtrrNl~L~~g  703 (707)
T KOG0263|consen  633 VLASGGADNSVRLWDLTKVIELLNLGHISTSNSAITQENNASSLLLGSFYTKNTPVVGLHFTRRNLLLAVG  703 (707)
T ss_pred             EEEecCCCCeEEEEEchhhcccccccccccccccccccCCCCcceeeeeeecCceEEEEEEeccceeEEec
Confidence            9999999999999999764433000            01122334555544 5789999999777555554

>KOG0296|consensus

Probab=100.00  E-value=3.5e-38  Score=271.94  Aligned_cols=337  Identities=18%  Similarity=0.279  Sum_probs=284.5

Q ss_pred             CcceEeeCCCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEeeCCCC
Q psy12697        213 SKATKLIGHESEVFICAWNPVKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNG  292 (602)
Q Consensus       213 ~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  292 (602)
                      .....+..|.++|++++.+|+.+++++|+.|....+|++.++....                ....|...|+++.|+.+|
T Consensus        55 dS~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~----------------eltgHKDSVt~~~Fshdg  118 (399)
T KOG0296|consen   55 DSLVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAG----------------ELTGHKDSVTCCSFSHDG  118 (399)
T ss_pred             cceeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCccee----------------EecCCCCceEEEEEccCc
Confidence            3446788999999999999999999999999999999999887321                223467899999999999


Q ss_pred             CeEEEEeCCCeEEEEcCC-CcceeecccccCCeEEEEEccCCCEEEEEecCCcEEEEeCCCCceeEEeeeccCCeeeeec
Q psy12697        293 SFLATGSYDGYARIWTSD-GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDW  371 (602)
Q Consensus       293 ~~l~~~~~dg~i~i~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~  371 (602)
                      .+||+|..+|.|++|... +.....+...-..|.-+.|+|.+..|++|+.||.+.+|.+.++...+.+.+|..++.+-.|
T Consensus       119 tlLATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f  198 (399)
T KOG0296|consen  119 TLLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEF  198 (399)
T ss_pred             eEEEecCCCccEEEEEcccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccc
Confidence            999999999999999976 4555555556677889999999999999999999999999998888999999999999999


Q ss_pred             cCCC-eEEEeeCCCeEEEEEcCCCceeeEeccC-CCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeeeEeeccccccE
Q psy12697        372 QSNT-SFASCSTDQHIHVCKLHSDKPVKSFEGH-TNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHDLQAHNKEI  449 (602)
Q Consensus       372 ~~~~-~~~~~~~~~~i~i~d~~~~~~~~~~~~~-~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i  449 (602)
                      .|++ +++++..||+|++|+..+++++..+... .....++.++..+..++.|+.++.+++-+..+++.+....+.... 
T Consensus       199 ~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~-  277 (399)
T KOG0296|consen  199 IPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPE-  277 (399)
T ss_pred             cCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCcc-
Confidence            9985 5889999999999999999999888743 345788999999999999999999999999888877766531000 


Q ss_pred             EEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeeecccCCCeeEee
Q psy12697        450 YTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVD  529 (602)
Q Consensus       450 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~  529 (602)
                        +                    ..........|..+.+|..-.+.|+|+.||+|.|||+...++...+. |..+|+.+.
T Consensus       278 --l--------------------~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~-he~~V~~l~  334 (399)
T KOG0296|consen  278 --L--------------------KPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICE-HEDGVTKLK  334 (399)
T ss_pred             --c--------------------cccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheecc-CCCceEEEE
Confidence              0                    00011112334444455566789999999999999999888777776 889999999


Q ss_pred             ecCCceEEEeeCCCcEEEeecCCCCceeeeecccccceEEEEecCCcEEEEEECCCCCeEEEeccCCeEEe
Q psy12697        530 WQSNTSFASCSTDQHIHVCKLHSDKPVKSFEGHTTGQLVHSYKGTGGIFEVCWNSRGDKVGASASDGSVFK  600 (602)
Q Consensus       530 ~s~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~v~i  600 (602)
                      |-++.+|++++.+|.|+.||.++|+.+..+.||.           .+|.+++.+|+.+++++++.|++.+|
T Consensus       335 w~~t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~-----------~~Il~f~ls~~~~~vvT~s~D~~a~V  394 (399)
T KOG0296|consen  335 WLNTDYLLTACANGKVRQWDARTGQLKFTYTGHQ-----------MGILDFALSPQKRLVVTVSDDNTALV  394 (399)
T ss_pred             EcCcchheeeccCceEEeeeccccceEEEEecCc-----------hheeEEEEcCCCcEEEEecCCCeEEE
Confidence            9995599999999999999999999999999987           66999999999999999999999876

>KOG0284|consensus

Probab=100.00  E-value=1.1e-39  Score=285.08  Aligned_cols=281  Identities=21%  Similarity=0.379  Sum_probs=252.2

Q ss_pred             CCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEeeCCCCCeEEEEeC
Q psy12697        221 HESEVFICAWNPVKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFLATGSY  300 (602)
Q Consensus       221 h~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~  300 (602)
                      -..+|..+.|.|+|+.|++|+..|.+.+|+...-..                ......|...|+++.|+++|.++++|+.
T Consensus        95 vkc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnF----------------EtilQaHDs~Vr~m~ws~~g~wmiSgD~  158 (464)
T KOG0284|consen   95 VKCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNF----------------ETILQAHDSPVRTMKWSHNGTWMISGDK  158 (464)
T ss_pred             cccceeeEEEcCCCceeEeecccccEEEecCceeeH----------------HHHhhhhcccceeEEEccCCCEEEEcCC
Confidence            356799999999999999999999999998743211                1233457899999999999999999999


Q ss_pred             CCeEEEEcCCCcceeeccccc-CCeEEEEEccCCCEEEEEecCCcEEEEeCCCCceeEEeeeccCCeeeeeccCC-CeEE
Q psy12697        301 DGYARIWTSDGSLKSTLGQHK-GPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSN-TSFA  378 (602)
Q Consensus       301 dg~i~i~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  378 (602)
                      +|.|++|+.+...++.+..|. ..|++++|+|+...+++++.||+|+|||....+....+.+|.-.+.+++|.|. +.++
T Consensus       159 gG~iKyWqpnmnnVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLia  238 (464)
T KOG0284|consen  159 GGMIKYWQPNMNNVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIA  238 (464)
T ss_pred             CceEEecccchhhhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeE
Confidence            999999999977777777666 89999999999999999999999999999999999999999999999999997 6789


Q ss_pred             EeeCCCeEEEEEcCCCceeeEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeeeEeeccccccEEEEEECCCC
Q psy12697        379 SCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHDLQAHNKEIYTIKWSPTG  458 (602)
Q Consensus       379 ~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~  458 (602)
                      +++.|+.|++||.+++.++.++.+|...|..+.|+|++++|+++|.|..++++|+++.+.+.++++|...+.++.|+|- 
T Consensus       239 sgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~-  317 (464)
T KOG0284|consen  239 SGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPL-  317 (464)
T ss_pred             EccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhheeeccccc-
Confidence            9999999999999999999999999999999999999999999999999999999999999999988888888888875 


Q ss_pred             CCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeee-cccCCCeeEeeecCCc-eE
Q psy12697        459 PETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQF-SFHSAPALDVDWQSNT-SF  536 (602)
Q Consensus       459 ~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-~~~~~~v~~~~~s~~~-~l  536 (602)
                                                      ...+|.+|+.||.|..|.+...+++..+ .+|...|.+++|+|-| .|
T Consensus       318 --------------------------------~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil  365 (464)
T KOG0284|consen  318 --------------------------------NESLFTSGGSDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHIL  365 (464)
T ss_pred             --------------------------------cccceeeccCCCceEEEeccccccccCCCcccccceeeeeccccceeE
Confidence                                            3467999999999999999855555443 4699999999999999 99


Q ss_pred             EEeeCCCcEEEeec
Q psy12697        537 ASCSTDQHIHVCKL  550 (602)
Q Consensus       537 ~~~~~d~~i~iw~~  550 (602)
                      ++|+.|.++++|.-
T Consensus       366 ~tgsnd~t~rfw~r  379 (464)
T KOG0284|consen  366 ATGSNDRTVRFWTR  379 (464)
T ss_pred             eecCCCcceeeecc
Confidence            99999999999975

>KOG0284|consensus

Probab=100.00  E-value=1.3e-39  Score=284.69  Aligned_cols=278  Identities=22%  Similarity=0.461  Sum_probs=244.2

Q ss_pred             CCceeEEeeCCCCCeEEEEeCCCeEEEEcCCC-cceeecccccCCeEEEEEccCCCEEEEEecCCcEEEEeCCCCceeEE
Q psy12697        280 NKDVTSLDWNNNGSFLATGSYDGYARIWTSDG-SLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQ  358 (602)
Q Consensus       280 ~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~  358 (602)
                      ...|..+.|.|+|+.|++|+..|.+.+|+... .....+..|..+|+++.|++++.++++|+.+|.|++|+..-......
T Consensus        96 kc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnVk~~  175 (464)
T KOG0284|consen   96 KCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNNVKII  175 (464)
T ss_pred             ccceeeEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhhhHHh
Confidence            46799999999999999999999999999753 33345678999999999999999999999999999999765544444


Q ss_pred             eeeccCCeeeeeccCC-CeEEEeeCCCeEEEEEcCCCceeeEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCe
Q psy12697        359 FSFHSAPALDVDWQSN-TSFASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDN  437 (602)
Q Consensus       359 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~  437 (602)
                      ...|...|.+++|+|+ ..|++++.||.|+|||....+....+.+|.-.|.+++|+|...+|++||.|..|++||.+++.
T Consensus       176 ~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~  255 (464)
T KOG0284|consen  176 QAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGS  255 (464)
T ss_pred             hHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeecCCCcc
Confidence            4445589999999986 679999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeEeeccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCceeee
Q psy12697        438 CVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQ  517 (602)
Q Consensus       438 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~  517 (602)
                      ++.++..|.                                  ..|..+.|+|++++|++++.|..++++|+++.+.++.
T Consensus       256 cl~tlh~HK----------------------------------ntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~  301 (464)
T KOG0284|consen  256 CLATLHGHK----------------------------------NTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFT  301 (464)
T ss_pred             hhhhhhhcc----------------------------------ceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHH
Confidence            998887654                                  4555566666889999999999999999999999999


Q ss_pred             ecccCCCeeEeeecCCc--eEEEeeCCCcEEEeecCCCCceeeeecccccceEEEEecCCcEEEEEECCCCCeEEEeccC
Q psy12697        518 FSFHSAPALDVDWQSNT--SFASCSTDQHIHVCKLHSDKPVKSFEGHTTGQLVHSYKGTGGIFEVCWNSRGDKVGASASD  595 (602)
Q Consensus       518 ~~~~~~~v~~~~~s~~~--~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~d  595 (602)
                      +++|...|+++.|+|-.  .|.+|+.||.|..|.+...+++..++..          +.+.|++|+|+|=|.+|++|+.|
T Consensus       302 ~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~A----------Hd~~iwsl~~hPlGhil~tgsnd  371 (464)
T KOG0284|consen  302 YRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPPA----------HDGEIWSLAYHPLGHILATGSND  371 (464)
T ss_pred             hhcchhhheeeccccccccceeeccCCCceEEEeccccccccCCCcc----------cccceeeeeccccceeEeecCCC
Confidence            99999999999999976  8999999999999999866665554322          24779999999999999999999


Q ss_pred             CeEEee
Q psy12697        596 GSVFKN  601 (602)
Q Consensus       596 g~v~i~  601 (602)
                      .+++.+
T Consensus       372 ~t~rfw  377 (464)
T KOG0284|consen  372 RTVRFW  377 (464)
T ss_pred             cceeee
Confidence            999875

>KOG0285|consensus

Probab=100.00  E-value=4e-38  Score=270.59  Aligned_cols=289  Identities=24%  Similarity=0.379  Sum_probs=254.3

Q ss_pred             ceeeeeeeccCCceEEEEECCCCCeEEEeeCCceEEEEecCCceeEEEeeccCceEEEEeCCCCCCCCCCCCcccccccc
Q psy12697        130 GECLNTLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKGTGGIFEVCWNSRGTPPNPPESMEVDASIE  209 (602)
Q Consensus       130 ~~~~~~l~~h~~~V~~~~~s~d~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (602)
                      -+..+.+++|.+.|.|+++.|.+++++||+.|++|+|||+.+|++.                                  
T Consensus       141 wKl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~Lk----------------------------------  186 (460)
T KOG0285|consen  141 WKLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLK----------------------------------  186 (460)
T ss_pred             ceehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEE----------------------------------
Confidence            4566788999999999999999999999999999999999999987                                  


Q ss_pred             ccCCcceEeeCCCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEeeC
Q psy12697        210 IPQSKATKLIGHESEVFICAWNPVKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWN  289 (602)
Q Consensus       210 ~~~~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  289 (602)
                            .++.||-..|..+++++-..||++++.|+.|+.||++..+                                  
T Consensus       187 ------ltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~nk----------------------------------  226 (460)
T KOG0285|consen  187 ------LTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYNK----------------------------------  226 (460)
T ss_pred             ------EeecchhheeeeeeecccCceEEEecCCCeeEEEechhhh----------------------------------
Confidence                  4567899999999999988899999888888888886543                                  


Q ss_pred             CCCCeEEEEeCCCeEEEEcCCCcceeecccccCCeEEEEEccCCCEEEEEecCCcEEEEeCCCCceeEEeeeccCCeeee
Q psy12697        290 NNGSFLATGSYDGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDV  369 (602)
Q Consensus       290 ~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~  369 (602)
                                             .+..+.+|-+.|.+++..|.-+.|++++.|.++++||+++...+..+.+|..+|..+
T Consensus       227 -----------------------vIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V  283 (460)
T KOG0285|consen  227 -----------------------VIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASV  283 (460)
T ss_pred             -----------------------hHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeE
Confidence                                   233456788899999999999999999999999999999999999999999999999


Q ss_pred             eccC-CCeEEEeeCCCeEEEEEcCCCceeeEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeeeEeecccccc
Q psy12697        370 DWQS-NTSFASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHDLQAHNKE  448 (602)
Q Consensus       370 ~~~~-~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~  448 (602)
                      .+.+ +..+++|+.|++|++||++.++...++..|...+.+++.+|....+|+++.|. |+-|++..+..+..+.+|..-
T Consensus       284 ~~~~~dpqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~dn-ik~w~~p~g~f~~nlsgh~~i  362 (460)
T KOG0285|consen  284 MCQPTDPQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPDN-IKQWKLPEGEFLQNLSGHNAI  362 (460)
T ss_pred             EeecCCCceEEecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCcc-ceeccCCccchhhccccccce
Confidence            8876 57899999999999999999999999999999999999999999999999875 999999999888888777776


Q ss_pred             EEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeeecc--------
Q psy12697        449 IYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSF--------  520 (602)
Q Consensus       449 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~--------  520 (602)
                      +.+++...|                                   .++++|+++|.+..||.++|-..+....        
T Consensus       363 intl~~nsD-----------------------------------~v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~  407 (460)
T KOG0285|consen  363 INTLSVNSD-----------------------------------GVLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLE  407 (460)
T ss_pred             eeeeeeccC-----------------------------------ceEEEcCCceEEEEEecCcCcccccccccccCCccc
Confidence            666666554                                   3689999999999999999876655421        


Q ss_pred             cCCCeeEeeecCCc-eEEEeeCCCcEEEeecC
Q psy12697        521 HSAPALDVDWQSNT-SFASCSTDQHIHVCKLH  551 (602)
Q Consensus       521 ~~~~v~~~~~s~~~-~l~~~~~d~~i~iw~~~  551 (602)
                      ....|++.+|...| +|++|..|.+|++|.-+
T Consensus       408 sEagI~as~fDktg~rlit~eadKtIk~~keD  439 (460)
T KOG0285|consen  408 SEAGIFASCFDKTGSRLITGEADKTIKMYKED  439 (460)
T ss_pred             cccceeEEeecccCceEEeccCCcceEEEecc
Confidence            24468999999999 99999999999999843

>KOG0265|consensus

Probab=100.00  E-value=1.8e-37  Score=260.72  Aligned_cols=278  Identities=24%  Similarity=0.411  Sum_probs=244.9

Q ss_pred             cCCCCceeEEeeCCCCCeEEEEeCCCeEEEEcCCC--cceeecccccCCeEEEEEccCCCEEEEEecCCcEEEEeCCCCc
Q psy12697        277 VPSNKDVTSLDWNNNGSFLATGSYDGYARIWTSDG--SLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQ  354 (602)
Q Consensus       277 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~  354 (602)
                      ..|.+.|..+.|+|+|.+||+|+.|..|.+|+..+  +....+.+|.+.|..+.|.+|++.+++++.|.+++.||+++|+
T Consensus        44 ~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~  123 (338)
T KOG0265|consen   44 PGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETGK  123 (338)
T ss_pred             CCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEecccce
Confidence            45789999999999999999999999999999765  3455678999999999999999999999999999999999999


Q ss_pred             eeEEeeeccCCeeeeeccCCC--eEEEeeCCCeEEEEEcCCCceeeEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEe
Q psy12697        355 CEQQFSFHSAPALDVDWQSNT--SFASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWS  432 (602)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd  432 (602)
                      +.+.+..|..-+..+....-+  .+.+++.|+++++||+++...++++. ...+++++.|..++..+.+|+-|+.|++||
T Consensus       124 ~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~-~kyqltAv~f~d~s~qv~sggIdn~ikvWd  202 (338)
T KOG0265|consen  124 RIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFE-NKYQLTAVGFKDTSDQVISGGIDNDIKVWD  202 (338)
T ss_pred             eeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccc-cceeEEEEEecccccceeeccccCceeeec
Confidence            999999999999988855444  36778899999999999998888775 345799999999999999999999999999


Q ss_pred             CCCCeeeEeeccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCCCeEEEEeCCC-
Q psy12697        433 LDKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAAS-  511 (602)
Q Consensus       433 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~~~-  511 (602)
                      ++.....+.+.+|                                  ..+|+.+..+|+|.++.+-+.|.++++||++- 
T Consensus       203 ~r~~d~~~~lsGh----------------------------------~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~  248 (338)
T KOG0265|consen  203 LRKNDGLYTLSGH----------------------------------ADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPF  248 (338)
T ss_pred             cccCcceEEeecc----------------------------------cCceeeEEeccCCCccccccccceEEEEEeccc
Confidence            9998888877765                                  45566666677889999999999999999864 


Q ss_pred             ---CceeeeecccCC----CeeEeeecCCc-eEEEeeCCCcEEEeecCCCCceeeeecccccceEEEEecCCcEEEEEEC
Q psy12697        512 ---GQCEQQFSFHSA----PALDVDWQSNT-SFASCSTDQHIHVCKLHSDKPVKSFEGHTTGQLVHSYKGTGGIFEVCWN  583 (602)
Q Consensus       512 ---~~~~~~~~~~~~----~v~~~~~s~~~-~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s  583 (602)
                         .+++..+.+|..    ....++|+|++ .+.+|+.|..+++||..+...+..++||.           +.|.++.|+
T Consensus       249 ~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~-----------gsvn~~~Fh  317 (338)
T KOG0265|consen  249 APSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLPGHY-----------GSVNEVDFH  317 (338)
T ss_pred             CCCCceEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeecccccEEEEcCCcc-----------eeEEEeeec
Confidence               345777776543    36678999999 99999999999999999989999999987           889999999


Q ss_pred             CCCCeEEEeccCCeEEe
Q psy12697        584 SRGDKVGASASDGSVFK  600 (602)
Q Consensus       584 pdg~~l~~~~~dg~v~i  600 (602)
                      |...+|.+++.|.+|++
T Consensus       318 p~e~iils~~sdk~i~l  334 (338)
T KOG0265|consen  318 PTEPIILSCSSDKTIYL  334 (338)
T ss_pred             CCCcEEEEeccCceeEe
Confidence            99999999999999986

>KOG0645|consensus

Probab=100.00  E-value=1.9e-36  Score=250.83  Aligned_cols=293  Identities=28%  Similarity=0.461  Sum_probs=232.2

Q ss_pred             eeeeeeeccCCceEEEEECCC-CCeEEEeeCCceEEEEecCCceeEEEeeccCceEEEEeCCCCCCCCCCCCcccccccc
Q psy12697        131 ECLNTLTRHTEPVYSVAFSPD-GKFLASGSFDKCVHIWSARTGQLVHSYKGTGGIFEVCWNSRGTPPNPPESMEVDASIE  209 (602)
Q Consensus       131 ~~~~~l~~h~~~V~~~~~s~d-~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (602)
                      ..++.+++|.+.|..++|+|- |..|||++.|+.|+||+...+.......                              
T Consensus         5 ~~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~------------------------------   54 (312)
T KOG0645|consen    5 ILEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKT------------------------------   54 (312)
T ss_pred             eeEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEE------------------------------
Confidence            356788999999999999998 9999999999999999988533221100                              


Q ss_pred             ccCCcceEeeCCCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEeeC
Q psy12697        210 IPQSKATKLIGHESEVFICAWNPVKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWN  289 (602)
Q Consensus       210 ~~~~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  289 (602)
                            ..-.+|...|.+++|+|.|++|++++.|.++.||.-..++...              ....-.|...|.|++|+
T Consensus        55 ------vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efec--------------v~~lEGHEnEVK~Vaws  114 (312)
T KOG0645|consen   55 ------VLDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGEFEC--------------VATLEGHENEVKCVAWS  114 (312)
T ss_pred             ------eccccchheeeeeeecCCCcEEEEeeccceEEEeecCCCceeE--------------EeeeeccccceeEEEEc
Confidence                  1113699999999999999999999999999999876544221              11223568899999999


Q ss_pred             CCCCeEEEEeCCCeEEEEcCC----CcceeecccccCCeEEEEEccCCCEEEEEecCCcEEEEeCCCCceeEEeeeccCC
Q psy12697        290 NNGSFLATGSYDGYARIWTSD----GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAP  365 (602)
Q Consensus       290 ~~~~~l~~~~~dg~i~i~~~~----~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~  365 (602)
                      ++|++||+++.|..|.+|...    -.....+..|...|..+.|+|....|++++.|.+|++|+-..+.           
T Consensus       115 ~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dd-----------  183 (312)
T KOG0645|consen  115 ASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDD-----------  183 (312)
T ss_pred             CCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcceeEEeccCCeEEEEeecCCC-----------
Confidence            999999999999999999876    24567889999999999999999999999999999999754210           


Q ss_pred             eeeeeccCCCeEEEeeCCCeEEEEEcCCCceeeEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeeeEeeccc
Q psy12697        366 ALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHDLQAH  445 (602)
Q Consensus       366 ~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~  445 (602)
                                                 .-..+.++.+|.+.|.+++|+|.|..|+++++|++++||...+.-    -..|
T Consensus       184 ---------------------------dW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~~----~~~~  232 (312)
T KOG0645|consen  184 ---------------------------DWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTDL----SGMH  232 (312)
T ss_pred             ---------------------------CeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccCc----chhc
Confidence                                       123467788899999999999999999999999999999865211    0123


Q ss_pred             cccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCC------cee-eee
Q psy12697        446 NKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASG------QCE-QQF  518 (602)
Q Consensus       446 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~~~~------~~~-~~~  518 (602)
                      ...++.+                                  .|.  ...|++++.|+.|++|.-...      +++ ..-
T Consensus       233 sr~~Y~v----------------------------------~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~  276 (312)
T KOG0645|consen  233 SRALYDV----------------------------------PWD--NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKE  276 (312)
T ss_pred             ccceEee----------------------------------eec--ccceEeccCCCEEEEEEecCCCCCchHHHHHhhh
Confidence            3444444                                  444  246999999999999976643      111 233


Q ss_pred             cccCCCeeEeeecCCc--eEEEeeCCCcEEEeecC
Q psy12697        519 SFHSAPALDVDWQSNT--SFASCSTDQHIHVCKLH  551 (602)
Q Consensus       519 ~~~~~~v~~~~~s~~~--~l~~~~~d~~i~iw~~~  551 (602)
                      ..|...|+++.|.|..  +|++|+.||.|++|.+.
T Consensus       277 ~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~  311 (312)
T KOG0645|consen  277 GAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWELE  311 (312)
T ss_pred             cccccccceEEEcCCCCCceeecCCCceEEEEEec
Confidence            4588899999999953  99999999999999863

>KOG0276|consensus

Probab=100.00  E-value=2.3e-36  Score=278.26  Aligned_cols=390  Identities=20%  Similarity=0.316  Sum_probs=303.9

Q ss_pred             eeeeccCCceEEEEECCCCCeEEEeeCCceEEEEecCCceeEEEeeccCceEEEEeCCCCCCCCCCCCccccccccccCC
Q psy12697        134 NTLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKGTGGIFEVCWNSRGTPPNPPESMEVDASIEIPQS  213 (602)
Q Consensus       134 ~~l~~h~~~V~~~~~s~d~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  213 (602)
                      +++..|+..|.++.|+|...+++++-.+|.|.|||.++...++++.-                                 
T Consensus         7 rk~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV---------------------------------   53 (794)
T KOG0276|consen    7 RKFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEV---------------------------------   53 (794)
T ss_pred             hHhhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeee---------------------------------
Confidence            45666999999999999999999999999999999999998877652                                 


Q ss_pred             cceEeeCCCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEeeCCCCC
Q psy12697        214 KATKLIGHESEVFICAWNPVKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGS  293 (602)
Q Consensus       214 ~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  293 (602)
                             ..-+|.++.|-+..+++++|+.|..|++|+..+.+....+                -.|...|.|++.+|...
T Consensus        54 -------~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ekV~~F----------------eAH~DyIR~iavHPt~P  110 (794)
T KOG0276|consen   54 -------SEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEKVKTF----------------EAHSDYIRSIAVHPTLP  110 (794)
T ss_pred             -------cccchhhheeeeccceEEEecCCceEEEEecccceeeEEe----------------eccccceeeeeecCCCC
Confidence                   4567888999999999999999999999999988764322                23578899999999999


Q ss_pred             eEEEEeCCCeEEEEcCCC--cceeecccccCCeEEEEEcc-CCCEEEEEecCCcEEEEeCCCCceeEEeeeccCCeeeee
Q psy12697        294 FLATGSYDGYARIWTSDG--SLKSTLGQHKGPIFALKWNK-RGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVD  370 (602)
Q Consensus       294 ~l~~~~~dg~i~i~~~~~--~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~  370 (602)
                      ++++++.|-.|++||-++  .+.+++.+|...|.+++|.| |.+.+++++.|++|++|.+.+..+..++.+|...|.++.
T Consensus       111 ~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vd  190 (794)
T KOG0276|consen  111 YVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVD  190 (794)
T ss_pred             eEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCceeeeccccCcceEE
Confidence            999999999999999775  46778999999999999999 567899999999999999999999999999999999999


Q ss_pred             ccCCC---eEEEeeCCCeEEEEEcCCCceeeEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeeeEeeccccc
Q psy12697        371 WQSNT---SFASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHDLQAHNK  447 (602)
Q Consensus       371 ~~~~~---~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~  447 (602)
                      +.+.+   .+++|+.|..+++||..+..+++++.||...|+.+.|+|.-.++++|++||++|||+-.+-+...++...-.
T Consensus       191 yy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~gle  270 (794)
T KOG0276|consen  191 YYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNYGLE  270 (794)
T ss_pred             eccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccceEEEecCCCcEEEEecCCccEEEecCcceehhhhhhcCCc
Confidence            99887   799999999999999999999999999999999999999999999999999999999988887777777777


Q ss_pred             cEEEEEECCCCCCCCCCCcceeeeee-----------------------------ec-------------------cCCc
Q psy12697        448 EIYTIKWSPTGPETSNPNMSLIFILK-----------------------------ST-------------------LGQH  479 (602)
Q Consensus       448 ~i~~~~~~~~~~~~~~~~~~~~~~~~-----------------------------~~-------------------~~~~  479 (602)
                      .+.+++-.+....++.+.......+.                             .+                   +..-
T Consensus       271 RvW~I~~~k~~~~i~vG~Deg~i~v~lgreeP~vsMd~~gKIiwa~~~ei~~~~~ks~~~~~ev~DgErL~LsvKeLgs~  350 (794)
T KOG0276|consen  271 RVWCIAAHKGDGKIAVGFDEGSVTVKLGREEPAVSMDSNGKIIWAVHSEIQAVNLKSVGAQKEVTDGERLPLSVKELGSV  350 (794)
T ss_pred             eEEEEeecCCCCeEEEeccCCcEEEEccCCCCceeecCCccEEEEcCceeeeeeceeccCcccccCCccccchhhhcccc
Confidence            78887766655443322222111100                             00                   0001


Q ss_pred             cCCeEEEEEccCCCEEEEEeCCCeEEEEeCCC------Ccee-----------------------eeecccCCCeeEeee
Q psy12697        480 KGPIFALKWNKRGNYILSAGVDKTTIIWDAAS------GQCE-----------------------QQFSFHSAPALDVDW  530 (602)
Q Consensus       480 ~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~~~------~~~~-----------------------~~~~~~~~~v~~~~~  530 (602)
                      .-....++-||+|+++++++ ||.-.||-.-.      |+.+                       +.++.|.+  .+..+
T Consensus       351 eiyPq~L~hsPNGrfV~Vcg-dGEyiIyTala~RnK~fG~~~eFvw~~dsne~avRes~~~vki~knfke~ks--i~~~~  427 (794)
T KOG0276|consen  351 EIYPQTLAHSPNGRFVVVCG-DGEYIIYTALALRNKAFGSGLEFVWAADSNEFAVRESNGNVKIFKNFKEHKS--IRPDM  427 (794)
T ss_pred             ccchHHhccCCCCcEEEEec-CccEEEEEeeehhhcccccceeEEEcCCCCeEEEEecCCceEEEecceeccc--ccccc
Confidence            11123467789999877765 66666664211      1110                       01111110  00111


Q ss_pred             cC----CceEEEeeCCCcEEEeecCCCCceeeeecccccceEEEEecCCcEEEEEECCCCCeEEEeccCC
Q psy12697        531 QS----NTSFASCSTDQHIHVCKLHSDKPVKSFEGHTTGQLVHSYKGTGGIFEVCWNSRGDKVGASASDG  596 (602)
Q Consensus       531 s~----~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg  596 (602)
                      +.    .|.|+....++.+++||-++++.++.++..              ...+.|+-+|.+++.++.|.
T Consensus       428 ~~e~i~gg~Llg~~ss~~~~fydW~~~~lVrrI~v~--------------~k~v~w~d~g~lVai~~d~S  483 (794)
T KOG0276|consen  428 SAEGIFGGPLLGVRSSDFLCFYDWESGELVRRIEVT--------------SKHVYWSDNGELVAIAGDDS  483 (794)
T ss_pred             ceeeecCCceEEEEeCCeEEEEEcccceEEEEEeec--------------cceeEEecCCCEEEEEecCc
Confidence            11    124556666777888887777777666543              34688999999999998887

>KOG0263|consensus

Probab=100.00  E-value=1.4e-37  Score=295.18  Aligned_cols=280  Identities=28%  Similarity=0.513  Sum_probs=229.8

Q ss_pred             eeeeeeeccCCceEEEEECCCCCeEEEeeCCceEEEEecCCceeEEEeeccCceEEEEeCCCCCCCCCCCCcc--ccccc
Q psy12697        131 ECLNTLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKGTGGIFEVCWNSRGTPPNPPESME--VDASI  208 (602)
Q Consensus       131 ~~~~~l~~h~~~V~~~~~s~d~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~  208 (602)
                      -+..++..-...++|..||+|+.+||.|-.|..|++|.+...+ ++.++.......         + .....+  .+...
T Consensus       369 ic~YT~~nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~k-l~~lk~~~~l~~---------~-d~~sad~~~~~~D  437 (707)
T KOG0263|consen  369 ICMYTFHNTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKK-LKKLKDASDLSN---------I-DTESADVDVDMLD  437 (707)
T ss_pred             EEEEEEEEcCCcceeEeecCCcchhhccccccEEEEEecchhh-hccccchhhhcc---------c-cccccchhhhhcc
Confidence            4556676677889999999999999999999999999997543 222222111100         0 000001  11111


Q ss_pred             cccCCcceEeeCCCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEee
Q psy12697        209 EIPQSKATKLIGHESEVFICAWNPVKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDW  288 (602)
Q Consensus       209 ~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  288 (602)
                      .........+.||.++|+.+.|+|+.++|++++.|+++|+|.+.+...                                
T Consensus       438 ~~~~~~~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~--------------------------------  485 (707)
T KOG0263|consen  438 DDSSGTSRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSC--------------------------------  485 (707)
T ss_pred             ccCCceeEEeecCCCceeeeeecccccceeeccCCcceeeeeccccee--------------------------------
Confidence            223444566999999999999999999999999999999999875431                                


Q ss_pred             CCCCCeEEEEeCCCeEEEEcCCCcceeecccccCCeEEEEEccCCCEEEEEecCCcEEEEeCCCCceeEEeeeccCCeee
Q psy12697        289 NNNGSFLATGSYDGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALD  368 (602)
Q Consensus       289 ~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~  368 (602)
                                               .....+|..+|+.+.|+|.|-|+++++.|++.++|.......++.+.+|-..+.|
T Consensus       486 -------------------------~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~PlRifaghlsDV~c  540 (707)
T KOG0263|consen  486 -------------------------LVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKPLRIFAGHLSDVDC  540 (707)
T ss_pred             -------------------------EEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccCCchhhhcccccccce
Confidence                                     1133478999999999999999999999999999999999999999999999999


Q ss_pred             eeccCC-CeEEEeeCCCeEEEEEcCCCceeeEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeeeEeeccccc
Q psy12697        369 VDWQSN-TSFASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHDLQAHNK  447 (602)
Q Consensus       369 ~~~~~~-~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~  447 (602)
                      +.|+|+ ..+++|+.|.++++||+.++..++.|.||.++|.+++|||+|++|++|+.||.|.+||+.+++.+..+.+|  
T Consensus       541 v~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~H--  618 (707)
T KOG0263|consen  541 VSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLKGH--  618 (707)
T ss_pred             EEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhhcc--
Confidence            999999 56889999999999999999999999999999999999999999999999999999999999988877765  


Q ss_pred             cEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCC
Q psy12697        448 EIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASG  512 (602)
Q Consensus       448 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~~~~  512 (602)
                                                      .+.|.++.||.||..||+|+.|.+|++||+..-
T Consensus       619 --------------------------------t~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~  651 (707)
T KOG0263|consen  619 --------------------------------TGTIYSLSFSRDGNVLASGGADNSVRLWDLTKV  651 (707)
T ss_pred             --------------------------------cCceeEEEEecCCCEEEecCCCCeEEEEEchhh
Confidence                                            455666667778899999999999999998643

>KOG0295|consensus

Probab=100.00  E-value=1.1e-37  Score=268.62  Aligned_cols=293  Identities=23%  Similarity=0.424  Sum_probs=265.2

Q ss_pred             CCCceeEEeeCCCCCeEEEEeCCCeEEEEcCC-CcceeecccccCCeEEEEEccCCCEEEEEecCCcEEEEeCCC-Ccee
Q psy12697        279 SNKDVTSLDWNNNGSFLATGSYDGYARIWTSD-GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAAS-GQCE  356 (602)
Q Consensus       279 ~~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~-~~~~  356 (602)
                      +...|+.+-|+|+-..+++++.|++|++||.. ++....+.+|...+.++.|+..|+++++++.|-.+.+||..+ .+++
T Consensus       107 ~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~  186 (406)
T KOG0295|consen  107 HRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFFRCI  186 (406)
T ss_pred             cccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccchhheeHHHHHHHH
Confidence            56789999999999999999999999999975 778888999999999999999999999999999999999987 5777


Q ss_pred             EEeeeccCCeeeeeccCC-CeEEEeeCCCeEEEEEcCCCceeeEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEeCCC
Q psy12697        357 QQFSFHSAPALDVDWQSN-TSFASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDK  435 (602)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~  435 (602)
                      +...+|...+.++.+.|. ..+++++.|.+|+.|++.++-.+.++.+|...|..++.+.||.++|+++.|.+|++|-+.+
T Consensus       187 ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t  266 (406)
T KOG0295|consen  187 KSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVAT  266 (406)
T ss_pred             HHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEecCCCceEEEEEecc
Confidence            888889999999999886 5689999999999999999999999999999999999999999999999999999999999


Q ss_pred             CeeeEeeccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCcee
Q psy12697        436 DNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCE  515 (602)
Q Consensus       436 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~~~~~~~  515 (602)
                      +.+...++.|..++.+++|.|...+........           .        ...+.++.+++.|++|++||+.++.++
T Consensus       267 ~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~-----------~--------~~~~~~l~s~SrDktIk~wdv~tg~cL  327 (406)
T KOG0295|consen  267 KQCKAELREHEHPVECIAWAPESSYPSISEATG-----------S--------TNGGQVLGSGSRDKTIKIWDVSTGMCL  327 (406)
T ss_pred             chhhhhhhccccceEEEEecccccCcchhhccC-----------C--------CCCccEEEeecccceEEEEeccCCeEE
Confidence            999999999999999999998754321111000           0        004578999999999999999999999


Q ss_pred             eeecccCCCeeEeeecCCc-eEEEeeCCCcEEEeecCCCCceeeeecccccceEEEEecCCcEEEEEECCCCCeEEEecc
Q psy12697        516 QQFSFHSAPALDVDWQSNT-SFASCSTDQHIHVCKLHSDKPVKSFEGHTTGQLVHSYKGTGGIFEVCWNSRGDKVGASAS  594 (602)
Q Consensus       516 ~~~~~~~~~v~~~~~s~~~-~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~  594 (602)
                      .++.+|.+.|..++|+|.| +|+++..|+++++||+++++++..++.|.           .-++++.|..+-.++++|+-
T Consensus       328 ~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~-----------hfvt~lDfh~~~p~VvTGsV  396 (406)
T KOG0295|consen  328 FTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHE-----------HFVTSLDFHKTAPYVVTGSV  396 (406)
T ss_pred             EEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCc-----------ceeEEEecCCCCceEEeccc
Confidence            9999999999999999999 99999999999999999999999998776           56899999999999999999


Q ss_pred             CCeEEee
Q psy12697        595 DGSVFKN  601 (602)
Q Consensus       595 dg~v~i~  601 (602)
                      |.+++++
T Consensus       397 dqt~Kvw  403 (406)
T KOG0295|consen  397 DQTVKVW  403 (406)
T ss_pred             cceeeee
Confidence            9998875

>KOG0265|consensus

Probab=100.00  E-value=8.1e-37  Score=256.74  Aligned_cols=292  Identities=23%  Similarity=0.412  Sum_probs=240.4

Q ss_pred             eeeeeeccCCceEEEEECCCCCeEEEeeCCceEEEEecCCceeEEEeeccCceEEEEeCCCCCCCCCCCCcccccccccc
Q psy12697        132 CLNTLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKGTGGIFEVCWNSRGTPPNPPESMEVDASIEIP  211 (602)
Q Consensus       132 ~~~~l~~h~~~V~~~~~s~d~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (602)
                      ++-.+.+|.+.|..+.|+|+|.+||||+.|..|.+|++.....                                     
T Consensus        39 p~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdce-------------------------------------   81 (338)
T KOG0265|consen   39 PIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCE-------------------------------------   81 (338)
T ss_pred             hhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEecccccc-------------------------------------
Confidence            3455789999999999999999999999999999999643221                                     


Q ss_pred             CCcceEeeCCCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEeeCCC
Q psy12697        212 QSKATKLIGHESEVFICAWNPVKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNN  291 (602)
Q Consensus       212 ~~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  291 (602)
                        ....+.+|.+.|..+.|.+|++.+++++.|.+++.||+++++......                .|..-++++.-+.-
T Consensus        82 --N~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k----------------~h~~~vNs~~p~rr  143 (338)
T KOG0265|consen   82 --NFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETGKRIRKHK----------------GHTSFVNSLDPSRR  143 (338)
T ss_pred             --ceeeeccccceeEeeeeccCCCEEEEecCCceEEEEecccceeeehhc----------------cccceeeecCcccc
Confidence              114567999999999999999999999999999999999998754322                23456777774444


Q ss_pred             C-CeEEEEeCCCeEEEEcCCCcceeecccccCCeEEEEEccCCCEEEEEecCCcEEEEeCCCCceeEEeeeccCCeeeee
Q psy12697        292 G-SFLATGSYDGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVD  370 (602)
Q Consensus       292 ~-~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~  370 (602)
                      | .++.+|+.||++++||.+.+........+-+++++.|...+..+++|+-|+.|++||++.+..               
T Consensus       144 g~~lv~SgsdD~t~kl~D~R~k~~~~t~~~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~---------------  208 (338)
T KOG0265|consen  144 GPQLVCSGSDDGTLKLWDIRKKEAIKTFENKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDG---------------  208 (338)
T ss_pred             CCeEEEecCCCceEEEEeecccchhhccccceeEEEEEecccccceeeccccCceeeeccccCcc---------------
Confidence            4 456778889999999998655555555677899999999999999999999899888875543               


Q ss_pred             ccCCCeEEEeeCCCeEEEEEcCCCceeeEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCC----eeeEeecccc
Q psy12697        371 WQSNTSFASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKD----NCVHDLQAHN  446 (602)
Q Consensus       371 ~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~----~~~~~~~~~~  446 (602)
                                                ...+.||.+.|+.+..+|+|.++.+-+.|.++++||++..    +++..+.++.
T Consensus       209 --------------------------~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~  262 (338)
T KOG0265|consen  209 --------------------------LYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHI  262 (338)
T ss_pred             --------------------------eEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecch
Confidence                                      4667789999999999999999999999999999999753    3344444432


Q ss_pred             ccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeeecccCCCee
Q psy12697        447 KEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPAL  526 (602)
Q Consensus       447 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~  526 (602)
                      .                              ..+.....++|||+++.+.+|+.|..+++||......+..+.+|.+.|.
T Consensus       263 h------------------------------nfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn  312 (338)
T KOG0265|consen  263 H------------------------------NFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLPGHYGSVN  312 (338)
T ss_pred             h------------------------------hhhhhcceeeccCCCCccccccccceEEEeecccccEEEEcCCcceeEE
Confidence            2                              1234455678999999999999999999999999999999999999999


Q ss_pred             EeeecCCc-eEEEeeCCCcEEEee
Q psy12697        527 DVDWQSNT-SFASCSTDQHIHVCK  549 (602)
Q Consensus       527 ~~~~s~~~-~l~~~~~d~~i~iw~  549 (602)
                      ++.|+|.. .|.+++.|.+|++=.
T Consensus       313 ~~~Fhp~e~iils~~sdk~i~lge  336 (338)
T KOG0265|consen  313 EVDFHPTEPIILSCSSDKTIYLGE  336 (338)
T ss_pred             EeeecCCCcEEEEeccCceeEeec
Confidence            99999999 999999999998743

>KOG0282|consensus

Probab=100.00  E-value=1.1e-38  Score=285.21  Aligned_cols=291  Identities=21%  Similarity=0.372  Sum_probs=247.8

Q ss_pred             ceeeeeeeccCCceEEEEECC-CCCeEEEeeCCceEEEEecCC-ceeEEEeeccCceEEEEeCCCCCCCCCCCCcccccc
Q psy12697        130 GECLNTLTRHTEPVYSVAFSP-DGKFLASGSFDKCVHIWSART-GQLVHSYKGTGGIFEVCWNSRGTPPNPPESMEVDAS  207 (602)
Q Consensus       130 ~~~~~~l~~h~~~V~~~~~s~-d~~~l~s~~~d~~v~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  207 (602)
                      .+.++++.||+..|+++.|.| .+.+|++++.|+.|+||++.. ++++                                
T Consensus       204 kk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~l--------------------------------  251 (503)
T KOG0282|consen  204 KKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCL--------------------------------  251 (503)
T ss_pred             HhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCccee--------------------------------
Confidence            456788999999999999999 999999999999999999876 6666                                


Q ss_pred             ccccCCcceEeeCCCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEe
Q psy12697        208 IEIPQSKATKLIGHESEVFICAWNPVKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLD  287 (602)
Q Consensus       208 ~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  287 (602)
                              +++.||..+|..++|+++|..+++++.|+.+++||++++.+......                 ...++|+.
T Consensus       252 --------rtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~~-----------------~~~~~cvk  306 (503)
T KOG0282|consen  252 --------RTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFHL-----------------DKVPTCVK  306 (503)
T ss_pred             --------hhhhcchhhhhhhhccccCCeeeeeecceeeeeeccccceEEEEEec-----------------CCCceeee
Confidence                    45568999999999999999999999999999999999987533322                 46789999


Q ss_pred             eCCCC-CeEEEEeCCCeEEEEcCC-CcceeecccccCCeEEEEEccCCCEEEEEecCCcEEEEeCCCCceeEEeeeccCC
Q psy12697        288 WNNNG-SFLATGSYDGYARIWTSD-GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAP  365 (602)
Q Consensus       288 ~~~~~-~~l~~~~~dg~i~i~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~  365 (602)
                      |.|++ +.+++|+.|+.|+.||++ ++.++.+..|-+.|..+.|-++|+++++++.|+++++|+.+.+-.++...     
T Consensus       307 f~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~-----  381 (503)
T KOG0282|consen  307 FHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIA-----  381 (503)
T ss_pred             cCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCccchhhc-----
Confidence            99988 889999999999999987 67788888999999999999999999999999999999987654433211     


Q ss_pred             eeeeeccCCCeEEEeeCCCeEEEEEcCCCceeeEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCe---eeEee
Q psy12697        366 ALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDN---CVHDL  442 (602)
Q Consensus       366 ~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~---~~~~~  442 (602)
                                                         ..+.....++..+|++++++.-+.|+.|.+|.+...-   ....+
T Consensus       382 -----------------------------------~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~f  426 (503)
T KOG0282|consen  382 -----------------------------------DPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRF  426 (503)
T ss_pred             -----------------------------------chhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhh
Confidence                                               1122346688999999999999999999999865421   12223


Q ss_pred             ccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeeecccC
Q psy12697        443 QAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHS  522 (602)
Q Consensus       443 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~  522 (602)
                      .+|..                                .+.-..+.|||||++|++|+.||.+.+||..+-+.+..++.|.
T Consensus       427 eGh~v--------------------------------aGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~  474 (503)
T KOG0282|consen  427 EGHSV--------------------------------AGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHD  474 (503)
T ss_pred             cceec--------------------------------cCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccCC
Confidence            33322                                2344568899999999999999999999999999999999999


Q ss_pred             CCeeEeeecCCc--eEEEeeCCCcEEEee
Q psy12697        523 APALDVDWQSNT--SFASCSTDQHIHVCK  549 (602)
Q Consensus       523 ~~v~~~~~s~~~--~l~~~~~d~~i~iw~  549 (602)
                      .++..+.|+|..  .+|+|+.||.|++|+
T Consensus       475 ~~ci~v~wHP~e~Skvat~~w~G~Ikiwd  503 (503)
T KOG0282|consen  475 QPCIGVDWHPVEPSKVATCGWDGLIKIWD  503 (503)
T ss_pred             cceEEEEecCCCcceeEecccCceeEecC
Confidence            999999999988  999999999999996

>KOG0285|consensus

Probab=100.00  E-value=6e-37  Score=263.39  Aligned_cols=287  Identities=24%  Similarity=0.339  Sum_probs=254.9

Q ss_pred             cCCCCceeEEeeCCCCCeEEEEeCCCeEEEEcCC-CcceeecccccCCeEEEEEccCCCEEEEEecCCcEEEEeCCCCce
Q psy12697        277 VPSNKDVTSLDWNNNGSFLATGSYDGYARIWTSD-GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQC  355 (602)
Q Consensus       277 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~  355 (602)
                      ..|.+.|.|+++.|...+|++|+.|+++.|||+. +.+..++.+|...|..+++|+-..|+++++.|+.|+.||++..+.
T Consensus       148 ~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~nkv  227 (460)
T KOG0285|consen  148 SGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYNKV  227 (460)
T ss_pred             hhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEechhhhh
Confidence            4567899999999999999999999999999987 788889999999999999999999999999999999999999999


Q ss_pred             eEEeeeccCCeeeeeccCC-CeEEEeeCCCeEEEEEcCCCceeeEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEeCC
Q psy12697        356 EQQFSFHSAPALDVDWQSN-TSFASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLD  434 (602)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~  434 (602)
                      ++.+.+|-..|.+++..|. ..+++|+.|..+++||+++...+..+.+|..+|..+.+.|-...+++||.|++|++||++
T Consensus       228 IR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~  307 (460)
T KOG0285|consen  228 IRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLR  307 (460)
T ss_pred             HHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecCCceEEEeeec
Confidence            9999999999999999986 679999999999999999999999999999999999999988899999999999999999


Q ss_pred             CCeeeEeeccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCce
Q psy12697        435 KDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQC  514 (602)
Q Consensus       435 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~~~~~~  514 (602)
                      .++...++..|...                                  |.+++.+|....+|+++.|. |+-|++..|..
T Consensus       308 agkt~~tlt~hkks----------------------------------vral~lhP~e~~fASas~dn-ik~w~~p~g~f  352 (460)
T KOG0285|consen  308 AGKTMITLTHHKKS----------------------------------VRALCLHPKENLFASASPDN-IKQWKLPEGEF  352 (460)
T ss_pred             cCceeEeeecccce----------------------------------eeEEecCCchhhhhccCCcc-ceeccCCccch
Confidence            99988887765554                                  45555555667889998886 99999999999


Q ss_pred             eeeecccCCCeeEeeecCCceEEEeeCCCcEEEeecCCCCceeeeecccccceEEEEecCCcEEEEEECCCCCeEEEecc
Q psy12697        515 EQQFSFHSAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEGHTTGQLVHSYKGTGGIFEVCWNSRGDKVGASAS  594 (602)
Q Consensus       515 ~~~~~~~~~~v~~~~~s~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~  594 (602)
                      ++.+.+|...+.+++...|+.+++|+..|.+.+||.+++-.-+.....   .....+.....|++.+|+..|..|++|..
T Consensus       353 ~~nlsgh~~iintl~~nsD~v~~~G~dng~~~fwdwksg~nyQ~~~t~---vqpGSl~sEagI~as~fDktg~rlit~ea  429 (460)
T KOG0285|consen  353 LQNLSGHNAIINTLSVNSDGVLVSGGDNGSIMFWDWKSGHNYQRGQTI---VQPGSLESEAGIFASCFDKTGSRLITGEA  429 (460)
T ss_pred             hhccccccceeeeeeeccCceEEEcCCceEEEEEecCcCccccccccc---ccCCccccccceeEEeecccCceEEeccC
Confidence            999999999999999999999999999999999999988554433211   11123334577999999999999999999


Q ss_pred             CCeEEee
Q psy12697        595 DGSVFKN  601 (602)
Q Consensus       595 dg~v~i~  601 (602)
                      |.+|++.
T Consensus       430 dKtIk~~  436 (460)
T KOG0285|consen  430 DKTIKMY  436 (460)
T ss_pred             CcceEEE
Confidence            9999873

>KOG0645|consensus

Probab=100.00  E-value=1.2e-35  Score=246.19  Aligned_cols=291  Identities=27%  Similarity=0.493  Sum_probs=230.0

Q ss_pred             eEeeCCCcceEEEEEcCC-CCEEEEeeCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEeeCCCCCe
Q psy12697        216 TKLIGHESEVFICAWNPV-KDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSF  294 (602)
Q Consensus       216 ~~l~~h~~~v~~~~~~~~-~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  294 (602)
                      ..+.+|.+.+..++|+|- |..||+++.|+.|++|+...+..   ...    +..     ....|...|.+++|+|.|++
T Consensus         8 ~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s---~~c----k~v-----ld~~hkrsVRsvAwsp~g~~   75 (312)
T KOG0645|consen    8 QKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDS---WTC----KTV-----LDDGHKRSVRSVAWSPHGRY   75 (312)
T ss_pred             EeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCc---EEE----EEe-----ccccchheeeeeeecCCCcE
Confidence            677899999999999998 88999999999999999875321   111    111     12246789999999999999


Q ss_pred             EEEEeCCCeEEEEcCC---CcceeecccccCCeEEEEEccCCCEEEEEecCCcEEEEeCCCCceeEEeeeccCCeeeeec
Q psy12697        295 LATGSYDGYARIWTSD---GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDW  371 (602)
Q Consensus       295 l~~~~~dg~i~i~~~~---~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~  371 (602)
                      |++++.|.++.||...   -+....+.+|...|.+++|+++|++|++++.|++|-+|.+..+..                
T Consensus        76 La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddE----------------  139 (312)
T KOG0645|consen   76 LASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDE----------------  139 (312)
T ss_pred             EEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCc----------------
Confidence            9999999999999855   356788999999999999999999999999999999998764321                


Q ss_pred             cCCCeEEEeeCCCeEEEEEcCCCceeeEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEeCCC---CeeeEeecccccc
Q psy12697        372 QSNTSFASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDK---DNCVHDLQAHNKE  448 (602)
Q Consensus       372 ~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~---~~~~~~~~~~~~~  448 (602)
                                            .+....++.|...|..+.|+|...+|++++.|++|++|+-..   -.+..++      
T Consensus       140 ----------------------fec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl------  191 (312)
T KOG0645|consen  140 ----------------------FECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTL------  191 (312)
T ss_pred             ----------------------EEEEeeeccccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEe------
Confidence                                  123456788999999999999999999999999999998652   2344444      


Q ss_pred             EEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeeecccCCCeeEe
Q psy12697        449 IYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDV  528 (602)
Q Consensus       449 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~  528 (602)
                                                  .+|...|.+++|++.|..|++++.|++++||-..+.    .-..|+.+++.+
T Consensus       192 ----------------------------~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~----~~~~~sr~~Y~v  239 (312)
T KOG0645|consen  192 ----------------------------DGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTD----LSGMHSRALYDV  239 (312)
T ss_pred             ----------------------------cCccceEEEEEecCCCceEEEecCCcceEeeeeccC----cchhcccceEee
Confidence                                        446667777788888899999999999999986521    112377889999


Q ss_pred             eecCCceEEEeeCCCcEEEeecCCC--CceeeeecccccceEEEEecCCcEEEEEECCC-CCeEEEeccCCeEEee
Q psy12697        529 DWQSNTSFASCSTDQHIHVCKLHSD--KPVKSFEGHTTGQLVHSYKGTGGIFEVCWNSR-GDKVGASASDGSVFKN  601 (602)
Q Consensus       529 ~~s~~~~l~~~~~d~~i~iw~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd-g~~l~~~~~dg~v~i~  601 (602)
                      .|. ++.|++++.|+.|++|.-...  .+...+-...      ...+...|+++.|+|. ..+|+++++||.+++.
T Consensus       240 ~W~-~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~------~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W  308 (312)
T KOG0645|consen  240 PWD-NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKK------EGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFW  308 (312)
T ss_pred             eec-ccceEeccCCCEEEEEEecCCCCCchHHHHHhh------hcccccccceEEEcCCCCCceeecCCCceEEEE
Confidence            999 779999999999999986542  1111111111      1112357999999995 6789999999999874

>KOG1539|consensus

Probab=100.00  E-value=5.4e-35  Score=278.23  Aligned_cols=417  Identities=16%  Similarity=0.232  Sum_probs=331.6

Q ss_pred             eeccceeeeecccceeeeeeeccCCceEEEEECCCCCeEEEeeCCceEEEEecCCceeEEEeeccCceEEEEeCCCCCCC
Q psy12697        117 VHRLTLPLWDVERGECLNTLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKGTGGIFEVCWNSRGTPP  196 (602)
Q Consensus       117 ~~~~~i~vwd~~~~~~~~~l~~h~~~V~~~~~s~d~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (602)
                      ...+.+.+|++.+++.+++++++...|+++.=+|-=..+|.|..+|+|.|+|+..++.+.+|+                 
T Consensus       179 s~~G~lql~Nvrt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk-----------------  241 (910)
T KOG1539|consen  179 SSQGRLQLWNVRTGKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSFK-----------------  241 (910)
T ss_pred             ecCCcEEEEEeccCcEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEEE-----------------
Confidence            346789999999999999999999999999999999999999999999999999999998876                 


Q ss_pred             CCCCCccccccccccCCcceEeeCC-CcceEEEEEcCCCC-EEEEeeCCCcEEEEeCCCCCCCCCccceEEEEEEecCCC
Q psy12697        197 NPPESMEVDASIEIPQSKATKLIGH-ESEVFICAWNPVKD-FLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGG  274 (602)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~l~~h-~~~v~~~~~~~~~~-~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~  274 (602)
                                              | .+.|+.++|..||+ .+++++..|.+.+||++..+....               
T Consensus       242 ------------------------~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v---------------  282 (910)
T KOG1539|consen  242 ------------------------QDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINV---------------  282 (910)
T ss_pred             ------------------------ccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeee---------------
Confidence                                    4 47899999999985 566777789999999987664321               


Q ss_pred             cccCCCCceeEEeeCCCCCeEEEEeCCCeEEEEcCC---C--cceeecccccCCeEEEEEc-cCCCEEEEEecCCcEEEE
Q psy12697        275 TEVPSNKDVTSLDWNNNGSFLATGSYDGYARIWTSD---G--SLKSTLGQHKGPIFALKWN-KRGNYILSAGVDKTTIIW  348 (602)
Q Consensus       275 ~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~---~--~~~~~~~~~~~~i~~~~~~-~~~~~l~~~~~dg~i~~w  348 (602)
                      ....|.+.+....|.|....+++++.|+.+++|-.+   |  .......+|..+..++.|. .+|.++++++.|++++.+
T Consensus       283 ~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~f  362 (910)
T KOG1539|consen  283 TRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSF  362 (910)
T ss_pred             eeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhh
Confidence            112346788999999999999999999999988644   2  4566677999999999998 788999999999999988


Q ss_pred             eCCCCceeEE------------------eeeccCCeeeeeccC------CCeEEEeeCCCeEEEEEcCCCce-eeEec--
Q psy12697        349 DAASGQCEQQ------------------FSFHSAPALDVDWQS------NTSFASCSTDQHIHVCKLHSDKP-VKSFE--  401 (602)
Q Consensus       349 d~~~~~~~~~------------------~~~~~~~~~~~~~~~------~~~~~~~~~~~~i~i~d~~~~~~-~~~~~--  401 (602)
                      ++.....-+.                  ....-.++..+++..      ++.+.+.-.+...+.|+.++... ...+.  
T Consensus       363 s~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~  442 (910)
T KOG1539|consen  363 SVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPK  442 (910)
T ss_pred             hhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCc
Confidence            7653211110                  111223455555433      34566666778899999987654 22222  


Q ss_pred             ---cCCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeeeEee---ccccccEEEEEECCCCCCCCCCCcceeeeeee-
Q psy12697        402 ---GHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHDL---QAHNKEIYTIKWSPTGPETSNPNMSLIFILKS-  474 (602)
Q Consensus       402 ---~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~---~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-  474 (602)
                         .....+++++.++.|++.+.|...|.|-+|++.+|-...++   ..|..+|+.++....+..+.......+..+.. 
T Consensus       443 ~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f  522 (910)
T KOG1539|consen  443 RFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDF  522 (910)
T ss_pred             cccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEec
Confidence               23467999999999999999999999999999999888888   58999999999888776655544444332211 


Q ss_pred             ccC------CccCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeeecccCCCeeEeeecCCc-eEEEeeCCCcEEE
Q psy12697        475 TLG------QHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNT-SFASCSTDQHIHV  547 (602)
Q Consensus       475 ~~~------~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~-~l~~~~~d~~i~i  547 (602)
                      .-.      .-...+.++..+.....++.+..|-.|+++|..+.+.++.|.+|.+.|++++||||| +|++++.|++|++
T Consensus       523 ~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~  602 (910)
T KOG1539|consen  523 KKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRT  602 (910)
T ss_pred             CCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEE
Confidence            111      135677888888888889999999999999999999999999999999999999999 9999999999999


Q ss_pred             eecCCCCceeeeecccccceEEEEecCCcEEEEEECCCCCeEEEeccCC-eEEee
Q psy12697        548 CKLHSDKPVKSFEGHTTGQLVHSYKGTGGIFEVCWNSRGDKVGASASDG-SVFKN  601 (602)
Q Consensus       548 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg-~v~i~  601 (602)
                      ||+-++.++-.            +....++.++.|||+|.+||++..|+ -|+++
T Consensus       603 wDlpt~~lID~------------~~vd~~~~sls~SPngD~LAT~Hvd~~gIylW  645 (910)
T KOG1539|consen  603 WDLPTGTLIDG------------LLVDSPCTSLSFSPNGDFLATVHVDQNGIYLW  645 (910)
T ss_pred             EeccCcceeee------------EecCCcceeeEECCCCCEEEEEEecCceEEEE
Confidence            99866655443            33457899999999999999999984 44443

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=100.00  E-value=5.5e-35  Score=275.95  Aligned_cols=286  Identities=33%  Similarity=0.586  Sum_probs=248.5

Q ss_pred             eeeeeccCCceEEEEECCCCCeEEEeeCCceEEEEecCCceeEEEeeccCceEEEEeCCCCCCCCCCCCccccccccccC
Q psy12697        133 LNTLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKGTGGIFEVCWNSRGTPPNPPESMEVDASIEIPQ  212 (602)
Q Consensus       133 ~~~l~~h~~~V~~~~~s~d~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  212 (602)
                      ++++++|.++|++++|+|++++|++++.||.|++|++.+++..                                     
T Consensus         2 ~~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~-------------------------------------   44 (289)
T cd00200           2 RRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELL-------------------------------------   44 (289)
T ss_pred             chHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcE-------------------------------------
Confidence            3567899999999999999999999999999999999887644                                     


Q ss_pred             CcceEeeCCCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEeeCCCC
Q psy12697        213 SKATKLIGHESEVFICAWNPVKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNG  292 (602)
Q Consensus       213 ~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  292 (602)
                         ..+..|...+..+.|+|+++++++++.||.|++|++.++.....     .           ..+...+.++.|++++
T Consensus        45 ---~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~-----~-----------~~~~~~i~~~~~~~~~  105 (289)
T cd00200          45 ---RTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRT-----L-----------TGHTSYVSSVAFSPDG  105 (289)
T ss_pred             ---EEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccceEE-----E-----------eccCCcEEEEEEcCCC
Confidence               33456888899999999999999999999999999987532211     1           1235689999999998


Q ss_pred             CeEEEEeCCCeEEEEcCC-CcceeecccccCCeEEEEEccCCCEEEEEecCCcEEEEeCCCCceeEEeeeccCCeeeeec
Q psy12697        293 SFLATGSYDGYARIWTSD-GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDW  371 (602)
Q Consensus       293 ~~l~~~~~dg~i~i~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~  371 (602)
                      +++++++.+|.+.+|++. ++....+..|...+.+++|+|++.++++++.++.+.+||+++++....+..+...+.++.|
T Consensus       106 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~  185 (289)
T cd00200         106 RILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAF  185 (289)
T ss_pred             CEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccccceeEecCccccceEEE
Confidence            888888889999999987 6667777789999999999999888888888999999999999988888888889999999


Q ss_pred             cCCC-eEEEeeCCCeEEEEEcCCCceeeEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeeeEeeccccccEE
Q psy12697        372 QSNT-SFASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHDLQAHNKEIY  450 (602)
Q Consensus       372 ~~~~-~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~  450 (602)
                      .+++ .+++++.++.+++||+..++.+..+..|...+.+++|+|++.++++++.||.|++||+.+++....+..      
T Consensus       186 ~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~------  259 (289)
T cd00200         186 SPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSG------  259 (289)
T ss_pred             CCCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEccc------
Confidence            9987 788888899999999999999998888999999999999999999988899999999998777666654      


Q ss_pred             EEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCCCeEEEEe
Q psy12697        451 TIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWD  508 (602)
Q Consensus       451 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd  508 (602)
                                                  |...|.+++|+|++++|++++.||.+++|+
T Consensus       260 ----------------------------~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~  289 (289)
T cd00200         260 ----------------------------HTNSVTSLAWSPDGKRLASGSADGTIRIWD  289 (289)
T ss_pred             ----------------------------cCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence                                        445566777777888999999999999996

>KOG0275|consensus

Probab=100.00  E-value=5.9e-37  Score=260.10  Aligned_cols=294  Identities=22%  Similarity=0.385  Sum_probs=247.2

Q ss_pred             ccCCceEEEEECCCCCeEEEeeCCceEEEEecCCceeEEEeeccCceEEEEeCCCCCCCCCCCCccccccccccCCcceE
Q psy12697        138 RHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKGTGGIFEVCWNSRGTPPNPPESMEVDASIEIPQSKATK  217 (602)
Q Consensus       138 ~h~~~V~~~~~s~d~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  217 (602)
                      +...-+.|..|||||+||++|+.||-|.+||..+|+....++-.                                ....
T Consensus       211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQ--------------------------------Aqd~  258 (508)
T KOG0275|consen  211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQ--------------------------------AQDN  258 (508)
T ss_pred             ccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhh--------------------------------hhcc
Confidence            45677899999999999999999999999999999877654421                                1133


Q ss_pred             eeCCCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEeeCCCCCeEEE
Q psy12697        218 LIGHESEVFICAWNPVKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFLAT  297 (602)
Q Consensus       218 l~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~  297 (602)
                      +.-+...|.|+.|+.|...|++|+.||.|++|.+.++.+...+.               ..|...|+|+.|+.|+..+++
T Consensus       259 fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFd---------------rAHtkGvt~l~FSrD~SqiLS  323 (508)
T KOG0275|consen  259 FMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQCLRRFD---------------RAHTKGVTCLSFSRDNSQILS  323 (508)
T ss_pred             eeecccceEEEeecccHHHhhccCcCCcEEEEEEecchHHHHhh---------------hhhccCeeEEEEccCcchhhc
Confidence            45688999999999999999999999999999999998764432               235788999999999999999


Q ss_pred             EeCCCeEEEEcCC-CcceeecccccCCeEEEEEccCCCEEEEEecCCcEEEEeCCCCceeEEeeeccCCeeeeeccCCCe
Q psy12697        298 GSYDGYARIWTSD-GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTS  376 (602)
Q Consensus       298 ~~~dg~i~i~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~  376 (602)
                      ++.|..+++--+. |+..+.+.+|.+.|+...|+++|.++++++.||+|++|+..+.+|+.++....             
T Consensus       324 ~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~-------------  390 (508)
T KOG0275|consen  324 ASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLG-------------  390 (508)
T ss_pred             ccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCC-------------
Confidence            9999999999976 88899999999999999999999999999999999999999999887765321             


Q ss_pred             EEEeeCCCeEEEEEcCCCceeeEeccCCCCeEEEEECC-CCCEEEEEECCCeEEEEeCCCCeeeEeeccccccEEEEEEC
Q psy12697        377 FASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDP-QGLLLASCSDDMTLKIWSLDKDNCVHDLQAHNKEIYTIKWS  455 (602)
Q Consensus       377 ~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~  455 (602)
                                                ...+|.++-.-| +...++++...++|.|.++. |+.++++....         
T Consensus       391 --------------------------~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~q-GQvVrsfsSGk---------  434 (508)
T KOG0275|consen  391 --------------------------TDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQ-GQVVRSFSSGK---------  434 (508)
T ss_pred             --------------------------CcccceeEEEcCCCCceEEEEcCCCeEEEEecc-ceEEeeeccCC---------
Confidence                                      223355555555 45677888888888888875 45555553221         


Q ss_pred             CCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeeecccCCCeeEeeecCCc-
Q psy12697        456 PTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNT-  534 (602)
Q Consensus       456 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~-  534 (602)
                                            ...+...+.+.||.|.++...+.|+.++.+.+.+|++..++..|...+..++-+|.. 
T Consensus       435 ----------------------REgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhEkdvIGl~HHPHqN  492 (508)
T KOG0275|consen  435 ----------------------REGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEKDVIGLTHHPHQN  492 (508)
T ss_pred             ----------------------ccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeecccccccccccCcccc
Confidence                                  134556677889999999999999999999999999999999999999999999988 


Q ss_pred             eEEEeeCCCcEEEee
Q psy12697        535 SFASCSTDQHIHVCK  549 (602)
Q Consensus       535 ~l~~~~~d~~i~iw~  549 (602)
                      .+|+-+.||.+++|.
T Consensus       493 llAsYsEDgllKLWk  507 (508)
T KOG0275|consen  493 LLASYSEDGLLKLWK  507 (508)
T ss_pred             hhhhhcccchhhhcC
Confidence            999999999999995

>KOG1408|consensus

Probab=100.00  E-value=2.1e-34  Score=269.31  Aligned_cols=469  Identities=19%  Similarity=0.279  Sum_probs=332.8

Q ss_pred             cceeeeecccceeeeeeeccCCceEEEEECCCCCeEEEee--CCceEEEEecCCceeEEEeeccC-ceEEEEeCCCCCCC
Q psy12697        120 LTLPLWDVERGECLNTLTRHTEPVYSVAFSPDGKFLASGS--FDKCVHIWSARTGQLVHSYKGTG-GIFEVCWNSRGTPP  196 (602)
Q Consensus       120 ~~i~vwd~~~~~~~~~l~~h~~~V~~~~~s~d~~~l~s~~--~d~~v~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  196 (602)
                      -.|.++|++..+.-+.+..|..+++|++||++|+|+|+|-  ....++||++.....+..|..+. ++.+++|+|.++++
T Consensus        58 CvVVlfn~~~~tQ~hlvnssRk~~t~vAfS~~GryvatGEcG~~pa~kVw~la~h~vVAEfvdHKY~vtcvaFsp~~kyv  137 (1080)
T KOG1408|consen   58 CVVVLFNVDSCTQSHLVNSSRKPLTCVAFSQNGRYVATGECGRTPASKVWSLAFHGVVAEFVDHKYNVTCVAFSPGNKYV  137 (1080)
T ss_pred             cEEEEEcccccchhheecccCcceeEEEEcCCCcEEEecccCCCccceeeeeccccchhhhhhccccceeeeecCCCcEE
Confidence            4788999999999999999999999999999999999985  67889999999988887776654 78999999999988


Q ss_pred             CCCCCccccc--cccccCCcceEeeCCCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCccceEEEE-------
Q psy12697        197 NPPESMEVDA--SIEIPQSKATKLIGHESEVFICAWNPVKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLR-------  267 (602)
Q Consensus       197 ~~~~~~~~~~--~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~-------  267 (602)
                      ........-.  .+.........-..-...|..++|+.++.|+++.+. ..|++|.++.+...... .+...+       
T Consensus       138 vSVGsQHDMIVnv~dWr~N~~~asnkiss~Vsav~fsEdgSYfvT~gn-rHvk~wyl~~~~Kykdp-iPl~gRs~~lg~l  215 (1080)
T KOG1408|consen  138 VSVGSQHDMIVNVNDWRVNSSGASNKISSVVSAVAFSEDGSYFVTSGN-RHVKLWYLQIQSKYKDP-IPLPGRSYFLGNL  215 (1080)
T ss_pred             EeeccccceEEEhhhhhhcccccccccceeEEEEEEccCCceeeeeee-eeEEEEEeeccccccCC-ccccchhhhcccc
Confidence            7555443211  110011111111123567899999999999999865 78999999877632111 000000       


Q ss_pred             -------------------EEecCCCcccC-------------CCCceeEEeeCCCCCeEEEEeCCCeEEEEcCCCc-ce
Q psy12697        268 -------------------HCISKGGTEVP-------------SNKDVTSLDWNNNGSFLATGSYDGYARIWTSDGS-LK  314 (602)
Q Consensus       268 -------------------~~~~~~~~~~~-------------~~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~-~~  314 (602)
                                         .++...+....             ......|++.+  .++|++|+.+|.|++|+...- ..
T Consensus       216 r~n~f~avaCg~gicAestfait~qGhLvEFSsRRLLDKWVqcRTTnAnCIcVs--~r~I~cgCa~g~vrlFnp~tL~y~  293 (1080)
T KOG1408|consen  216 RFNEFLAVACGVGICAESTFAITAQGHLVEFSSRRLLDKWVQCRTTNANCICVS--SRLIACGCAKGMVRLFNPETLDYA  293 (1080)
T ss_pred             ccchhhhhhhcCcccccceEEEecccceeeechhhhhhhhhhhhccccceeeee--cceEEEeeccceeeecCcchhhhc
Confidence                               00000000000             01123444444  569999999999999984411 00


Q ss_pred             eecc---------------cc---------cCCeEEEEEccCCCEEEEEecCCcEEEEeCCCCceeE---EeeeccCCee
Q psy12697        315 STLG---------------QH---------KGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQ---QFSFHSAPAL  367 (602)
Q Consensus       315 ~~~~---------------~~---------~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~---~~~~~~~~~~  367 (602)
                      .++.               .|         -....++.|++....|.+.-.|..+++||+++-..+.   .+-.|...|+
T Consensus       294 ~Tlpr~halg~d~a~~~q~~~~~s~~~~a~fPD~IA~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW  373 (1080)
T KOG1408|consen  294 GTLPRSHALGSDTANLSQPEPKNSESSPAIFPDAIACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIW  373 (1080)
T ss_pred             cccccccccccchhhcccccccccccCcccCCceeEEEecCCCceEEEEEcCceEEEEeccccccccceeeeeeccceee
Confidence            0000               00         1123477899988999999999999999998754432   2334665555


Q ss_pred             eeec------------cCCCeEEEeeCCCeEEEEEcCCCceeeEe-----------------------------------
Q psy12697        368 DVDW------------QSNTSFASCSTDQHIHVCKLHSDKPVKSF-----------------------------------  400 (602)
Q Consensus       368 ~~~~------------~~~~~~~~~~~~~~i~i~d~~~~~~~~~~-----------------------------------  400 (602)
                      .+.-            .|.+.|++|+.|++|++|++.....-..+                                   
T Consensus       374 ~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~  453 (1080)
T KOG1408|consen  374 DVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALV  453 (1080)
T ss_pred             eeccccccccCcccccCCccceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccch
Confidence            5443            34567999999999999998752110000                                   


Q ss_pred             --ccCCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeeeEeeccccccEEEEEECCCCC---CCCCCCcc-eee----
Q psy12697        401 --EGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHDLQAHNKEIYTIKWSPTGP---ETSNPNMS-LIF----  470 (602)
Q Consensus       401 --~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~---~~~~~~~~-~~~----  470 (602)
                        -.....+.+++++|+|++||+|..-|++++|++...+....+..|..+|.++.|+....   .++..... .+.    
T Consensus       454 s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv  533 (1080)
T KOG1408|consen  454 STCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDV  533 (1080)
T ss_pred             hhcCcccceEEEEECCCcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEec
Confidence              01234699999999999999999999999999999999999999999999999985432   23333222 222    


Q ss_pred             ----eeeeccCCccCCeEEEEEccCC--CEEEEEeCCCeEEEEeCCCCceeeeeccc-----CCCeeEeeecCCc-eEEE
Q psy12697        471 ----ILKSTLGQHKGPIFALKWNKRG--NYILSAGVDKTTIIWDAASGQCEQQFSFH-----SAPALDVDWQSNT-SFAS  538 (602)
Q Consensus       471 ----~~~~~~~~~~~~v~~i~~s~~~--~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-----~~~v~~~~~s~~~-~l~~  538 (602)
                          .+..++.+|.+.|+++.|...|  ..+++++.|..|.+--......-..+..|     ...+++++..|.. ++++
T Consensus       534 ~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t  613 (1080)
T KOG1408|consen  534 KRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVT  613 (1080)
T ss_pred             ccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEE
Confidence                3456788999999999999887  78999999997765433321112222222     3468899999998 9999


Q ss_pred             eeCCCcEEEeecCCCCceeeeecccccceEEEEecCCcEEEEEECCCCCeEEEeccCCeEEe
Q psy12697        539 CSTDQHIHVCKLHSDKPVKSFEGHTTGQLVHSYKGTGGIFEVCWNSRGDKVGASASDGSVFK  600 (602)
Q Consensus       539 ~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~v~i  600 (602)
                      ++.|..|+||++++++..+.|++....        .+..-.+..+|.|.|||+.+.|.++.+
T Consensus       614 ~cQDrnirif~i~sgKq~k~FKgs~~~--------eG~lIKv~lDPSgiY~atScsdktl~~  667 (1080)
T KOG1408|consen  614 VCQDRNIRIFDIESGKQVKSFKGSRDH--------EGDLIKVILDPSGIYLATSCSDKTLCF  667 (1080)
T ss_pred             EecccceEEEeccccceeeeecccccC--------CCceEEEEECCCccEEEEeecCCceEE
Confidence            999999999999999999999876522        366778899999999999999999876

>KOG0293|consensus

Probab=100.00  E-value=4.4e-36  Score=262.85  Aligned_cols=292  Identities=22%  Similarity=0.356  Sum_probs=243.8

Q ss_pred             cccCCcceEeeCCCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEee
Q psy12697        209 EIPQSKATKLIGHESEVFICAWNPVKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDW  288 (602)
Q Consensus       209 ~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  288 (602)
                      .++....+.+..|.++|+.+.|+++|++||+++.|.+..+|.+...                                  
T Consensus       211 qip~qt~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d----------------------------------  256 (519)
T KOG0293|consen  211 QIPSQTWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYD----------------------------------  256 (519)
T ss_pred             cCCchhhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecC----------------------------------
Confidence            4556666778889999999999999999999999999999976321                                  


Q ss_pred             CCCCCeEEEEeCCCeEEEEcCCCcceeecccccCCeEEEEEccCCCEEEEEecCCcEEEEeCCCCceeEEeeec-cCCee
Q psy12697        289 NNNGSFLATGSYDGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFH-SAPAL  367 (602)
Q Consensus       289 ~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~-~~~~~  367 (602)
                                   +       .-++..++.+|..+|..+.||||.++|++++.|..+.+||+.+|.+...+... ...+.
T Consensus       257 -------------~-------~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~  316 (519)
T KOG0293|consen  257 -------------V-------HFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVS  316 (519)
T ss_pred             -------------c-------ceeeeeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcccCcCCCcc
Confidence                         1       11345677889999999999999999999999999999999999988877644 67889


Q ss_pred             eeeccCCCe-EEEeeCCCeEEEEEcCCCceeeEeccCC-CCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeeeEeeccc
Q psy12697        368 DVDWQSNTS-FASCSTDQHIHVCKLHSDKPVKSFEGHT-NEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHDLQAH  445 (602)
Q Consensus       368 ~~~~~~~~~-~~~~~~~~~i~i~d~~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~  445 (602)
                      +.+|.|++. +++|+.|+.+..||+.... ....++-. ..|.++++++||+++++.+.|..|++++..+.......   
T Consensus       317 sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~-~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~li---  392 (519)
T KOG0293|consen  317 SCAWCPDGFRFVTGSPDRTIIMWDLDGNI-LGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLI---  392 (519)
T ss_pred             eeEEccCCceeEecCCCCcEEEecCCcch-hhcccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhccc---
Confidence            999999864 9999999999999997543 33333332 46999999999999999999999999998765433222   


Q ss_pred             cccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeeecccCCC-
Q psy12697        446 NKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAP-  524 (602)
Q Consensus       446 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~-  524 (602)
                                                      ....+|+++++|.||+++++--.+..+.+||++..+.++.+.+|... 
T Consensus       393 --------------------------------se~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~  440 (519)
T KOG0293|consen  393 --------------------------------SEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGH  440 (519)
T ss_pred             --------------------------------cccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccc
Confidence                                            13567888889999999999999999999999999999999998764 


Q ss_pred             -eeEeeecC-Cc-eEEEeeCCCcEEEeecCCCCceeeeecccccceEEEEecCCcEEEEEECCCC-CeEEEeccCCeEEe
Q psy12697        525 -ALDVDWQS-NT-SFASCSTDQHIHVCKLHSDKPVKSFEGHTTGQLVHSYKGTGGIFEVCWNSRG-DKVGASASDGSVFK  600 (602)
Q Consensus       525 -v~~~~~s~-~~-~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg-~~l~~~~~dg~v~i  600 (602)
                       +..-||.- +. ++++|+.|+.|+||+..+++++..+.||.           ..|.+++|+|.. .++|+|++||+|+|
T Consensus       441 fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs-----------~~vNcVswNP~~p~m~ASasDDgtIRI  509 (519)
T KOG0293|consen  441 FIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHS-----------KTVNCVSWNPADPEMFASASDDGTIRI  509 (519)
T ss_pred             eEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCc-----------ceeeEEecCCCCHHHhhccCCCCeEEE
Confidence             45556644 32 99999999999999999999999999997           679999999976 57899999999998


Q ss_pred             e
Q psy12697        601 N  601 (602)
Q Consensus       601 ~  601 (602)
                      +
T Consensus       510 W  510 (519)
T KOG0293|consen  510 W  510 (519)
T ss_pred             e
Confidence            6

>KOG0266|consensus

Probab=100.00  E-value=6.8e-35  Score=286.33  Aligned_cols=291  Identities=32%  Similarity=0.496  Sum_probs=249.9

Q ss_pred             eeeeecc-CCceEEEEECCCCCeEEEeeCCceEEEEecCCce--eEEEeeccCceEEEEeCCCCCCCCCCCCcccccccc
Q psy12697        133 LNTLTRH-TEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQ--LVHSYKGTGGIFEVCWNSRGTPPNPPESMEVDASIE  209 (602)
Q Consensus       133 ~~~l~~h-~~~V~~~~~s~d~~~l~s~~~d~~v~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (602)
                      ...+.+| ...|.++.|+|+|++|++++.|+.+++|+..+++  .+                                  
T Consensus       151 ~~~~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~----------------------------------  196 (456)
T KOG0266|consen  151 EQTLAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLL----------------------------------  196 (456)
T ss_pred             eeeecccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhh----------------------------------
Confidence            4455454 8899999999999999999999999999996655  22                                  


Q ss_pred             ccCCcceEeeCCCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEeeC
Q psy12697        210 IPQSKATKLIGHESEVFICAWNPVKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWN  289 (602)
Q Consensus       210 ~~~~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  289 (602)
                            ..+.+|...|..++|+|+++++++++.|++|++||+...                                   
T Consensus       197 ------~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~-----------------------------------  235 (456)
T KOG0266|consen  197 ------RELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDD-----------------------------------  235 (456)
T ss_pred             ------ccccccccceeeeEECCCCcEEEEecCCceEEEeeccCC-----------------------------------
Confidence                  334678888888888888888888888888888887321                                   


Q ss_pred             CCCCeEEEEeCCCeEEEEcCCCcceeecccccCCeEEEEEccCCCEEEEEecCCcEEEEeCCCCceeEEeeeccCCeeee
Q psy12697        290 NNGSFLATGSYDGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDV  369 (602)
Q Consensus       290 ~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~  369 (602)
                                           +...+++.+|...|++++|+|+++.+++|+.|++|++||++++++...+..|...+..+
T Consensus       236 ---------------------~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~  294 (456)
T KOG0266|consen  236 ---------------------GRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGL  294 (456)
T ss_pred             ---------------------CeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEE
Confidence                                 12445677899999999999999999999999999999999999999999999999999


Q ss_pred             eccCCCe-EEEeeCCCeEEEEEcCCCc--eeeEeccCCCC--eEEEEECCCCCEEEEEECCCeEEEEeCCCCeeeEeecc
Q psy12697        370 DWQSNTS-FASCSTDQHIHVCKLHSDK--PVKSFEGHTNE--VNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHDLQA  444 (602)
Q Consensus       370 ~~~~~~~-~~~~~~~~~i~i~d~~~~~--~~~~~~~~~~~--i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~  444 (602)
                      +|++++. +++++.|+.|++||+.++.  +...+.++...  ++++.|+|+++++++++.|+.+++||+..+..+..+.+
T Consensus       295 ~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~  374 (456)
T KOG0266|consen  295 AFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTG  374 (456)
T ss_pred             EECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecc
Confidence            9999854 7777889999999999998  56777777665  99999999999999999999999999999999998888


Q ss_pred             ccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeeeccc-CC
Q psy12697        445 HNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFH-SA  523 (602)
Q Consensus       445 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~  523 (602)
                      |...+.                               .+.+...++.++++++|+.|+.|++||+.++..+..+.+| ..
T Consensus       375 ~~~~~~-------------------------------~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~  423 (456)
T KOG0266|consen  375 HSNLVR-------------------------------CIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHSKA  423 (456)
T ss_pred             cCCcce-------------------------------eEecccccCCCCeEEEEeCCceEEEEeCCccchhhhhcCCCCC
Confidence            766531                               1223344678999999999999999999999999999999 88


Q ss_pred             CeeEeeecCCc-eEEEee--CCCcEEEeec
Q psy12697        524 PALDVDWQSNT-SFASCS--TDQHIHVCKL  550 (602)
Q Consensus       524 ~v~~~~~s~~~-~l~~~~--~d~~i~iw~~  550 (602)
                      .+..+.++|.. .+++++  .|+.+++|..
T Consensus       424 ~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~  453 (456)
T KOG0266|consen  424 AVSDLSSHPTENLIASSSFEGDGLIRLWKY  453 (456)
T ss_pred             ceeccccCCCcCeeeecCcCCCceEEEecC
Confidence            99999999999 888887  7999999974

>KOG0276|consensus

Probab=100.00  E-value=4.1e-35  Score=270.03  Aligned_cols=293  Identities=23%  Similarity=0.400  Sum_probs=256.4

Q ss_pred             eEeeCCCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEeeCCCCCeE
Q psy12697        216 TKLIGHESEVFICAWNPVKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFL  295 (602)
Q Consensus       216 ~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l  295 (602)
                      +++..+...|.++.|+|...+++++-.+|.+.||+.++..........                .-+|.+..|-+..+++
T Consensus         7 rk~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~----------------~~PvRa~kfiaRknWi   70 (794)
T KOG0276|consen    7 RKFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVS----------------EVPVRAAKFIARKNWI   70 (794)
T ss_pred             hHhhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeec----------------ccchhhheeeeccceE
Confidence            345568999999999999999999999999999999988765544332                5678999999999999


Q ss_pred             EEEeCCCeEEEEcCC-CcceeecccccCCeEEEEEccCCCEEEEEecCCcEEEEeCCCC-ceeEEeeeccCCeeeeeccC
Q psy12697        296 ATGSYDGYARIWTSD-GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASG-QCEQQFSFHSAPALDVDWQS  373 (602)
Q Consensus       296 ~~~~~dg~i~i~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~~-~~~~~~~~~~~~~~~~~~~~  373 (602)
                      ++|+.|..|++|+.+ ++.+..+..|...|++++.+|...++++++.|-.|++||.+.+ .+.+.+.+|..-|.+++|.|
T Consensus        71 v~GsDD~~IrVfnynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnP  150 (794)
T KOG0276|consen   71 VTGSDDMQIRVFNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNP  150 (794)
T ss_pred             EEecCCceEEEEecccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecC
Confidence            999999999999987 7889999999999999999999999999999999999999865 77889999999999999998


Q ss_pred             C--CeEEEeeCCCeEEEEEcCCCceeeEeccCCCCeEEEEECC--CCCEEEEEECCCeEEEEeCCCCeeeEeeccccccE
Q psy12697        374 N--TSFASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDP--QGLLLASCSDDMTLKIWSLDKDNCVHDLQAHNKEI  449 (602)
Q Consensus       374 ~--~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i  449 (602)
                      .  +.|++++-|++|++|.+.+..+..++++|...|+|+.+-+  |..+|++|++|.+|+|||..+..|++++.+|...|
T Consensus       151 kD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nv  230 (794)
T KOG0276|consen  151 KDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNV  230 (794)
T ss_pred             CCccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccc
Confidence            6  6799999999999999999999999999999999999988  44799999999999999999999999988876666


Q ss_pred             EEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeeecccCCCeeEee
Q psy12697        450 YTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVD  529 (602)
Q Consensus       450 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~  529 (602)
                      ..+.|+|                                  .-.++++|++||+++||+..+-++..++.-.-..+.+++
T Consensus       231 s~v~fhp----------------------------------~lpiiisgsEDGTvriWhs~Ty~lE~tLn~gleRvW~I~  276 (794)
T KOG0276|consen  231 SFVFFHP----------------------------------ELPIIISGSEDGTVRIWNSKTYKLEKTLNYGLERVWCIA  276 (794)
T ss_pred             eEEEecC----------------------------------CCcEEEEecCCccEEEecCcceehhhhhhcCCceEEEEe
Confidence            6655555                                  556899999999999999999999998888888999999


Q ss_pred             ecCCc-eEEEeeCCCcEEEeecCCCCceeee
Q psy12697        530 WQSNT-SFASCSTDQHIHVCKLHSDKPVKSF  559 (602)
Q Consensus       530 ~s~~~-~l~~~~~d~~i~iw~~~~~~~~~~~  559 (602)
                      -.+.+ .++.|...|.|. ..+..++|..++
T Consensus       277 ~~k~~~~i~vG~Deg~i~-v~lgreeP~vsM  306 (794)
T KOG0276|consen  277 AHKGDGKIAVGFDEGSVT-VKLGREEPAVSM  306 (794)
T ss_pred             ecCCCCeEEEeccCCcEE-EEccCCCCceee
Confidence            98887 777776666554 456555554444

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=100.00  E-value=2.4e-34  Score=271.59  Aligned_cols=284  Identities=29%  Similarity=0.524  Sum_probs=247.4

Q ss_pred             eEeeCCCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEeeCCCCCeE
Q psy12697        216 TKLIGHESEVFICAWNPVKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFL  295 (602)
Q Consensus       216 ~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l  295 (602)
                      ..+.+|..+|.+++|+|++++|++++.||.+++|++.++...     ..           ...+...+..+.|+|+++.+
T Consensus         3 ~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~-----~~-----------~~~~~~~i~~~~~~~~~~~l   66 (289)
T cd00200           3 RTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELL-----RT-----------LKGHTGPVRDVAASADGTYL   66 (289)
T ss_pred             hHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcE-----EE-----------EecCCcceeEEEECCCCCEE
Confidence            345689999999999999999999999999999999876521     10           11235678899999999999


Q ss_pred             EEEeCCCeEEEEcCCC-cceeecccccCCeEEEEEccCCCEEEEEecCCcEEEEeCCCCceeEEeeeccCCeeeeeccCC
Q psy12697        296 ATGSYDGYARIWTSDG-SLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSN  374 (602)
Q Consensus       296 ~~~~~dg~i~i~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~  374 (602)
                      ++++.+|.|.+|+... .....+..|...+.++.|+++++++++++.++.+.+||+.+++....+..+...+.++.|+++
T Consensus        67 ~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  146 (289)
T cd00200          67 ASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPD  146 (289)
T ss_pred             EEEcCCCeEEEEEcCcccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCc
Confidence            9999999999999875 566777788889999999999888888888999999999999888888888889999999997


Q ss_pred             CeEEEeeC-CCeEEEEEcCCCceeeEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeeeEeeccccccEEEEE
Q psy12697        375 TSFASCST-DQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHDLQAHNKEIYTIK  453 (602)
Q Consensus       375 ~~~~~~~~-~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~  453 (602)
                      +.+++++. ++.+++||+++++.+..+..|...+.+++|+|+++.+++++.|+.|++||++.++.+..+..         
T Consensus       147 ~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~---------  217 (289)
T cd00200         147 GTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRG---------  217 (289)
T ss_pred             CCEEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhh---------
Confidence            66555555 99999999999999999999999999999999999999999999999999988776665544         


Q ss_pred             ECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeeecccCCCeeEeeecCC
Q psy12697        454 WSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSN  533 (602)
Q Consensus       454 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~  533 (602)
                                               |...+.++.|+|++.++++++.||.|++||+.+++....+..|...+.+++|+|+
T Consensus       218 -------------------------~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~  272 (289)
T cd00200         218 -------------------------HENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPD  272 (289)
T ss_pred             -------------------------cCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEccccCCcEEEEEECCC
Confidence                                     3445666777778788888888999999999999999999999999999999999


Q ss_pred             c-eEEEeeCCCcEEEee
Q psy12697        534 T-SFASCSTDQHIHVCK  549 (602)
Q Consensus       534 ~-~l~~~~~d~~i~iw~  549 (602)
                      + .+++++.|+.|++|+
T Consensus       273 ~~~l~~~~~d~~i~iw~  289 (289)
T cd00200         273 GKRLASGSADGTIRIWD  289 (289)
T ss_pred             CCEEEEecCCCeEEecC
Confidence            8 999999999999996

>KOG0266|consensus

Probab=100.00  E-value=1.1e-34  Score=284.90  Aligned_cols=280  Identities=26%  Similarity=0.462  Sum_probs=248.8

Q ss_pred             CCceeEEeeCCCCCeEEEEeCCCeEEEEcCC-Cc--ceeecccccCCeEEEEEccCCCEEEEEecCCcEEEEeC-CCCce
Q psy12697        280 NKDVTSLDWNNNGSFLATGSYDGYARIWTSD-GS--LKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDA-ASGQC  355 (602)
Q Consensus       280 ~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~-~~--~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~-~~~~~  355 (602)
                      ...|.++.|+++|+.+++++.++.+++|+.. ..  ....+.+|...|.+++|+|+++++++++.|+++++||+ ..+..
T Consensus       159 ~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~  238 (456)
T KOG0266|consen  159 CPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRN  238 (456)
T ss_pred             cCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeE
Confidence            5779999999999999999999999999985 33  45666889999999999999999999999999999999 55689


Q ss_pred             eEEeeeccCCeeeeeccCCC-eEEEeeCCCeEEEEEcCCCceeeEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEeCC
Q psy12697        356 EQQFSFHSAPALDVDWQSNT-SFASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLD  434 (602)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~  434 (602)
                      ++.+.+|...+.+++|+|.+ .+++|+.|++|++||+++++++..+.+|.+.|++++|++++++|++++.|+.|++||+.
T Consensus       239 ~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~  318 (456)
T KOG0266|consen  239 LKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLE  318 (456)
T ss_pred             EEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECC
Confidence            99999999999999999986 78999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCe--eeEeeccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCC
Q psy12697        435 KDN--CVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASG  512 (602)
Q Consensus       435 ~~~--~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~~~~  512 (602)
                      ++.  +...+..+..                               .. +++.+.|+|++++++++..|+.+++||+..+
T Consensus       319 ~~~~~~~~~~~~~~~-------------------------------~~-~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~  366 (456)
T KOG0266|consen  319 TGSKLCLKLLSGAEN-------------------------------SA-PVTSVQFSPNGKYLLSASLDRTLKLWDLRSG  366 (456)
T ss_pred             CCceeeeecccCCCC-------------------------------CC-ceeEEEECCCCcEEEEecCCCeEEEEEccCC
Confidence            987  3444443321                               12 6888899999999999999999999999999


Q ss_pred             ceeeeecccCCC---eeEeeecCCc-eEEEeeCCCcEEEeecCCCCceeeeecccccceEEEEecCCcEEEEEECCCCCe
Q psy12697        513 QCEQQFSFHSAP---ALDVDWQSNT-SFASCSTDQHIHVCKLHSDKPVKSFEGHTTGQLVHSYKGTGGIFEVCWNSRGDK  588 (602)
Q Consensus       513 ~~~~~~~~~~~~---v~~~~~s~~~-~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~  588 (602)
                      .+...+.+|...   +.+...++.+ .+++|+.|+.|++|++.++..+..+.+|.          ...+..++|+|..++
T Consensus       367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~----------~~~~~~~~~~~~~~~  436 (456)
T KOG0266|consen  367 KSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHS----------KAAVSDLSSHPTENL  436 (456)
T ss_pred             cceeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhhcCCC----------CCceeccccCCCcCe
Confidence            999999998885   3444557788 99999999999999999998888888883          167899999999999


Q ss_pred             EEEec--cCCeEEee
Q psy12697        589 VGASA--SDGSVFKN  601 (602)
Q Consensus       589 l~~~~--~dg~v~i~  601 (602)
                      +++++  .|+.++++
T Consensus       437 ~~s~s~~~d~~~~~w  451 (456)
T KOG0266|consen  437 IASSSFEGDGLIRLW  451 (456)
T ss_pred             eeecCcCCCceEEEe
Confidence            99999  67778765

>PLN00181 protein SPA1-RELATED; Provisional

Probab=100.00  E-value=1.9e-33  Score=297.89  Aligned_cols=294  Identities=17%  Similarity=0.306  Sum_probs=233.6

Q ss_pred             eeCCCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEeeCC-CCCeEE
Q psy12697        218 LIGHESEVFICAWNPVKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNN-NGSFLA  296 (602)
Q Consensus       218 l~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~  296 (602)
                      +..|...|.+++|+|++++|++|+.|+.|++|++..............         ....+...+.+++|++ ++.+|+
T Consensus       479 ~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~---------~~~~~~~~v~~l~~~~~~~~~la  549 (793)
T PLN00181        479 LLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPV---------VELASRSKLSGICWNSYIKSQVA  549 (793)
T ss_pred             ccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccce---------EEecccCceeeEEeccCCCCEEE
Confidence            456999999999999999999999999999999864311100000000         0111246789999987 478999


Q ss_pred             EEeCCCeEEEEcCC-CcceeecccccCCeEEEEEcc-CCCEEEEEecCCcEEEEeCCCCceeEEeeeccCCeeeeeccC-
Q psy12697        297 TGSYDGYARIWTSD-GSLKSTLGQHKGPIFALKWNK-RGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQS-  373 (602)
Q Consensus       297 ~~~~dg~i~i~~~~-~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~-  373 (602)
                      +++.||.|++||+. +.....+..|...|.+++|+| ++.+|++++.||.|++||++++..+..+..+ ..+.++.|.+ 
T Consensus       550 s~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~-~~v~~v~~~~~  628 (793)
T PLN00181        550 SSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTK-ANICCVQFPSE  628 (793)
T ss_pred             EEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecC-CCeEEEEEeCC
Confidence            99999999999986 566778889999999999997 7889999999999999999999888877654 5788888854 


Q ss_pred             -CCeEEEeeCCCeEEEEEcCCCc-eeeEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeeeEeeccccccEEE
Q psy12697        374 -NTSFASCSTDQHIHVCKLHSDK-PVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHDLQAHNKEIYT  451 (602)
Q Consensus       374 -~~~~~~~~~~~~i~i~d~~~~~-~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~  451 (602)
                       +..+++|+.||.|++||+++.+ ++..+.+|...|.++.|. ++.+|++++.|+.|++||++......    ...    
T Consensus       629 ~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~----~~~----  699 (793)
T PLN00181        629 SGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGI----NET----  699 (793)
T ss_pred             CCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCcccc----CCc----
Confidence             3579999999999999998765 577888999999999997 67899999999999999987531000    000    


Q ss_pred             EEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeee-------------
Q psy12697        452 IKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQF-------------  518 (602)
Q Consensus       452 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-------------  518 (602)
                                          ....+.+|...+..++|+|++++|++|+.|+.|++|+......+..+             
T Consensus       700 --------------------~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~  759 (793)
T PLN00181        700 --------------------PLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEV  759 (793)
T ss_pred             --------------------ceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCccccccc
Confidence                                01123457777888889999999999999999999998765443222             


Q ss_pred             cccCCCeeEeeecCCc-eEEEeeCCCcEEEeec
Q psy12697        519 SFHSAPALDVDWQSNT-SFASCSTDQHIHVCKL  550 (602)
Q Consensus       519 ~~~~~~v~~~~~s~~~-~l~~~~~d~~i~iw~~  550 (602)
                      ..|...|.+++|+|++ .|++|+.||.|+||++
T Consensus       760 ~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~~  792 (793)
T PLN00181        760 DDASQFISSVCWRGQSSTLVAANSTGNIKILEM  792 (793)
T ss_pred             CCCCcEEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence            2345569999999999 9999999999999996

>KOG1063|consensus

Probab=100.00  E-value=1.2e-33  Score=263.75  Aligned_cols=457  Identities=20%  Similarity=0.263  Sum_probs=312.5

Q ss_pred             ccceeeeecccceeeeeeeccCCceEEEEECCCCC---eEEEeeCCceEEEEecCCceeE--EEeeccCceEEEEeCCCC
Q psy12697        119 RLTLPLWDVERGECLNTLTRHTEPVYSVAFSPDGK---FLASGSFDKCVHIWSARTGQLV--HSYKGTGGIFEVCWNSRG  193 (602)
Q Consensus       119 ~~~i~vwd~~~~~~~~~l~~h~~~V~~~~~s~d~~---~l~s~~~d~~v~iwd~~~~~~~--~~~~~~~~~~~~~~~~~~  193 (602)
                      ...|.+||..+...+.++.||.++|+|+.|-|+.+   ++++|+.|+.|++|.++....+  ..+++ .....+++....
T Consensus        33 ~~~Iav~dp~k~~i~t~l~GH~a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~l~~~~~~~i~~~~g-~~~~~~cv~a~~  111 (764)
T KOG1063|consen   33 GPAIAVADPEKILIVTTLDGHVARVNCVHWLPTSEIVAEMVSGDSDGRVILWKLRDEYLIKIYTIQG-HCKECVCVVARS  111 (764)
T ss_pred             CceEEEeCcccceeEEeccCCccceEEEEEcccccccceEEEccCCCcEEEEEEeehheEEEEeecC-cceeEEEEEeee
Confidence            46899999999989999999999999999999888   8999999999999999854433  34444 123333333222


Q ss_pred             CCCCCCCCccccccccccCCcc-----eEeeCCCcceEEEEEcCC-CC-EEEEeeCCCcEEEEeCCCCCCCCCccceEEE
Q psy12697        194 TPPNPPESMEVDASIEIPQSKA-----TKLIGHESEVFICAWNPV-KD-FLASGSGDSTARIWDMTDSTKKDPKELQIVL  266 (602)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~-----~~l~~h~~~v~~~~~~~~-~~-~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~  266 (602)
                      ..............++..+...     ..+.-...--.|+++.|+ +. .++.|+.+..|.++.-...+.      ... 
T Consensus       112 ~~~~~~~ad~~v~vw~~~~~e~~~~~~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs~~~v~~~s~~~d~f------~~v-  184 (764)
T KOG1063|consen  112 SVMTCKAADGTVSVWDKQQDEVFLLAVLRFEIKEAIPLCLAALKNNKTFLLACGGSKFVVDLYSSSADSF------ARV-  184 (764)
T ss_pred             eEEEeeccCceEEEeecCCCceeeehheehhhhhHhhHHHhhhccCCcEEEEecCcceEEEEeccCCcce------eEE-
Confidence            2111111111111112111110     001111112235555663 33 445566677777775543211      111 


Q ss_pred             EEEecCCCcccCCCCceeEEeeCCCC---CeEEEEeCCCeEEEEcCC--C------------------------cce---
Q psy12697        267 RHCISKGGTEVPSNKDVTSLDWNNNG---SFLATGSYDGYARIWTSD--G------------------------SLK---  314 (602)
Q Consensus       267 ~~~~~~~~~~~~~~~~i~~~~~~~~~---~~l~~~~~dg~i~i~~~~--~------------------------~~~---  314 (602)
                             .....|.+.|.+++|...+   -++++++.|..|++|.+.  +                        ...   
T Consensus       185 -------~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~i  257 (764)
T KOG1063|consen  185 -------AELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRI  257 (764)
T ss_pred             -------EEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEE
Confidence                   1223567899999998744   478999999999999732  1                        000   


Q ss_pred             ---eecccccCCeEEEEEccCCCEEEEEecCCcEEEEeCCCC--ceeEEee-----eccCCeeeeeccCCC-eEEEeeCC
Q psy12697        315 ---STLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASG--QCEQQFS-----FHSAPALDVDWQSNT-SFASCSTD  383 (602)
Q Consensus       315 ---~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~~--~~~~~~~-----~~~~~~~~~~~~~~~-~~~~~~~~  383 (602)
                         ..+.+|...|.++.|+|.+..|++++.|.++.+|...+.  --+....     +.........|++++ .+++-+..
T Consensus       258 s~eall~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~  337 (764)
T KOG1063|consen  258 SFEALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRT  337 (764)
T ss_pred             ehhhhhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEeccc
Confidence               123489999999999999999999999999999976554  2332222     223446778888886 46667788


Q ss_pred             CeEEEEEcCCC---ceeeEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEeCCC----CeeeEeeccccccEEEEEECC
Q psy12697        384 QHIHVCKLHSD---KPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDK----DNCVHDLQAHNKEIYTIKWSP  456 (602)
Q Consensus       384 ~~i~i~d~~~~---~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~----~~~~~~~~~~~~~i~~~~~~~  456 (602)
                      |..++|.....   .+...+.||.+.|+.++|+|.|.+|++.+.|.+-|+|-.-.    ...+.+-+.|...++++++-+
T Consensus       338 Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn  417 (764)
T KOG1063|consen  338 GGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVN  417 (764)
T ss_pred             CcEEEEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehcc
Confidence            99999993332   24456679999999999999999999999999999986431    122333455666667776655


Q ss_pred             -CCCCCCCCCcceeee----------------------------------------------------------------
Q psy12697        457 -TGPETSNPNMSLIFI----------------------------------------------------------------  471 (602)
Q Consensus       457 -~~~~~~~~~~~~~~~----------------------------------------------------------------  471 (602)
                       +-.++..........                                                                
T Consensus       418 ~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p  497 (764)
T KOG1063|consen  418 EDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAP  497 (764)
T ss_pred             CCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCc
Confidence             211111100000000                                                                


Q ss_pred             -------------------eeeccCCccCCeEEEEEccCCCEEEEEeCC-----CeEEEEeCCCCceeeeecccCCCeeE
Q psy12697        472 -------------------LKSTLGQHKGPIFALKWNKRGNYILSAGVD-----KTTIIWDAASGQCEQQFSFHSAPALD  527 (602)
Q Consensus       472 -------------------~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~~~v~~  527 (602)
                                         -...+.+|...|.+++.+|+|+++|+++..     ..|++|+..+...++.+.+|+-.|+.
T Consensus       498 ~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~  577 (764)
T KOG1063|consen  498 CELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTR  577 (764)
T ss_pred             hhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEE
Confidence                               011245899999999999999999999764     45999999999999999999999999


Q ss_pred             eeecCCc-eEEEeeCCCcEEEeecCCCCc-eee---eecccccceEEEEecCCcEEEEEECCCCCeEEEeccCCeEEee
Q psy12697        528 VDWQSNT-SFASCSTDQHIHVCKLHSDKP-VKS---FEGHTTGQLVHSYKGTGGIFEVCWNSRGDKVGASASDGSVFKN  601 (602)
Q Consensus       528 ~~~s~~~-~l~~~~~d~~i~iw~~~~~~~-~~~---~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~v~i~  601 (602)
                      ++||||| +|++.+.|.++.+|....... -..   .+.|           ..-|++..|+||+.++|+++.|.+|+|.
T Consensus       578 l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~H-----------tRIIWdcsW~pde~~FaTaSRDK~VkVW  645 (764)
T KOG1063|consen  578 LAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAH-----------TRIIWDCSWSPDEKYFATASRDKKVKVW  645 (764)
T ss_pred             EEECCCCcEEEEeecCceEEeeeeecccchhhhhcccccc-----------ceEEEEcccCcccceeEEecCCceEEEE
Confidence            9999999 999999999999999754321 111   1222           3558999999999999999999999875

>PLN00181 protein SPA1-RELATED; Provisional

Probab=100.00  E-value=1.3e-33  Score=299.12  Aligned_cols=318  Identities=19%  Similarity=0.274  Sum_probs=247.4

Q ss_pred             cceeeeecccceeeee-----eeccCCceEEEEECCCCCeEEEeeCCceEEEEecCCceeEEEeeccCceEEEEeCCCCC
Q psy12697        120 LTLPLWDVERGECLNT-----LTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKGTGGIFEVCWNSRGT  194 (602)
Q Consensus       120 ~~i~vwd~~~~~~~~~-----l~~h~~~V~~~~~s~d~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (602)
                      +-.++|+..+.+....     +..|.+.|.+++|+|+|++||+|+.|+.|+|||..+...... .               
T Consensus       458 gl~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~-~---------------  521 (793)
T PLN00181        458 GLCKYLSFSKLRVKADLKQGDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGR-D---------------  521 (793)
T ss_pred             hhhhhhcccceEEEEeeccccccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCccccccc-c---------------
Confidence            4467788776665544     345899999999999999999999999999999764210000 0               


Q ss_pred             CCCCCCCccccccccccCCcceEeeCCCcceEEEEEcCC-CCEEEEeeCCCcEEEEeCCCCCCCCCccceEEEEEEecCC
Q psy12697        195 PPNPPESMEVDASIEIPQSKATKLIGHESEVFICAWNPV-KDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKG  273 (602)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~-~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~  273 (602)
                                      .......+ .+...|.+++|+|. +.+|++++.||+|++||+.++....               
T Consensus       522 ----------------~~~~~~~~-~~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~---------------  569 (793)
T PLN00181        522 ----------------IHYPVVEL-ASRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVT---------------  569 (793)
T ss_pred             ----------------cccceEEe-cccCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEE---------------
Confidence                            00000112 23467899999875 6899999999999999998654211               


Q ss_pred             CcccCCCCceeEEeeCC-CCCeEEEEeCCCeEEEEcCC-CcceeecccccCCeEEEEEc-cCCCEEEEEecCCcEEEEeC
Q psy12697        274 GTEVPSNKDVTSLDWNN-NGSFLATGSYDGYARIWTSD-GSLKSTLGQHKGPIFALKWN-KRGNYILSAGVDKTTIIWDA  350 (602)
Q Consensus       274 ~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~~~~-~~~~~~~~~~~~~i~~~~~~-~~~~~l~~~~~dg~i~~wd~  350 (602)
                       ....|...|++++|+| ++.+|++|+.||.|++||+. +.....+.. ...+.++.|+ +++.+|++|+.||.|++||+
T Consensus       570 -~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~-~~~v~~v~~~~~~g~~latgs~dg~I~iwD~  647 (793)
T PLN00181        570 -EMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKT-KANICCVQFPSESGRSLAFGSADHKVYYYDL  647 (793)
T ss_pred             -EecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEec-CCCeEEEEEeCCCCCEEEEEeCCCeEEEEEC
Confidence             1123578899999997 78999999999999999987 444555543 4679999995 57899999999999999999


Q ss_pred             CCCc-eeEEeeeccCCeeeeeccCCCeEEEeeCCCeEEEEEcCC------CceeeEeccCCCCeEEEEECCCCCEEEEEE
Q psy12697        351 ASGQ-CEQQFSFHSAPALDVDWQSNTSFASCSTDQHIHVCKLHS------DKPVKSFEGHTNEVNAIKWDPQGLLLASCS  423 (602)
Q Consensus       351 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~------~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  423 (602)
                      ++.+ ....+..|...+..+.|.++..+++++.|+.|++||+..      .+++..+.+|...+.+++|+|++++|++|+
T Consensus       648 ~~~~~~~~~~~~h~~~V~~v~f~~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs  727 (793)
T PLN00181        648 RNPKLPLCTMIGHSKTVSYVRFVDSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGS  727 (793)
T ss_pred             CCCCccceEecCCCCCEEEEEEeCCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEe
Confidence            8765 466777899999999999888999999999999999974      357788999999999999999999999999


Q ss_pred             CCCeEEEEeCCCCeeeEeecccc-ccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCCC
Q psy12697        424 DDMTLKIWSLDKDNCVHDLQAHN-KEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDK  502 (602)
Q Consensus       424 ~dg~i~iwd~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg  502 (602)
                      .|+.|++|+......+..+.... ..+..                      .....+...|.+++|+|++.+|++|+.||
T Consensus       728 ~D~~v~iw~~~~~~~~~s~~~~~~~~~~~----------------------~~~~~~~~~V~~v~ws~~~~~lva~~~dG  785 (793)
T PLN00181        728 ETNEVFVYHKAFPMPVLSYKFKTIDPVSG----------------------LEVDDASQFISSVCWRGQSSTLVAANSTG  785 (793)
T ss_pred             CCCEEEEEECCCCCceEEEecccCCcccc----------------------cccCCCCcEEEEEEEcCCCCeEEEecCCC
Confidence            99999999987654443332110 01100                      01234667899999999999999999999


Q ss_pred             eEEEEeC
Q psy12697        503 TTIIWDA  509 (602)
Q Consensus       503 ~i~iwd~  509 (602)
                      .|+||++
T Consensus       786 ~I~i~~~  792 (793)
T PLN00181        786 NIKILEM  792 (793)
T ss_pred             cEEEEec
Confidence            9999996

>KOG0292|consensus

Probab=100.00  E-value=5.6e-34  Score=272.65  Aligned_cols=357  Identities=18%  Similarity=0.306  Sum_probs=279.1

Q ss_pred             eeccCCceEEEEECCCCCeEEEeeCCceEEEEecCCceeEEEeeccCceEEEEeCCCCCCCCCCCCccccccccccCCcc
Q psy12697        136 LTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKGTGGIFEVCWNSRGTPPNPPESMEVDASIEIPQSKA  215 (602)
Q Consensus       136 l~~h~~~V~~~~~s~d~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  215 (602)
                      |...+..|..++|+|...+++++-..|.|++||.+-+.++..|                                     
T Consensus         5 fEskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rF-------------------------------------   47 (1202)
T KOG0292|consen    5 FESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRF-------------------------------------   47 (1202)
T ss_pred             hhcccccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhh-------------------------------------
Confidence            4456778899999999999999999999999999988887544                                     


Q ss_pred             eEeeCCCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEeeCCCCCeE
Q psy12697        216 TKLIGHESEVFICAWNPVKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFL  295 (602)
Q Consensus       216 ~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l  295 (602)
                         ..|.++|..++|+|+..++++|+.|-.|++|+..+.++..                ....|-..|..+.|++.-.++
T Consensus        48 ---deHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclf----------------tL~GHlDYVRt~~FHheyPWI  108 (1202)
T KOG0292|consen   48 ---DEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLF----------------TLLGHLDYVRTVFFHHEYPWI  108 (1202)
T ss_pred             ---hccCCccceeeecCCCCeEEecCCccEEEEEecccceehh----------------hhccccceeEEeeccCCCceE
Confidence               5699999999999999999999999999999998876642                223457889999999999999


Q ss_pred             EEEeCCCeEEEEcCC-CcceeecccccCCeEEEEEccCCCEEEEEecCCcEEEEeCCCCceeEEeeeccCCeeeeeccCC
Q psy12697        296 ATGSYDGYARIWTSD-GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSN  374 (602)
Q Consensus       296 ~~~~~dg~i~i~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~  374 (602)
                      ++++.|.+|+||+-. .+++..+.+|...|.|.+|+|....+++++.|.+|++||+...+....-.+.-..  .+.-.+.
T Consensus       109 lSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~--~~~~~~~  186 (1202)
T KOG0292|consen  109 LSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLED--QMRGQQG  186 (1202)
T ss_pred             EEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchh--hhhcccc
Confidence            999999999999965 7889999999999999999999999999999999999998754332211110000  0000000


Q ss_pred             CeEEEeeCCCeEEEEEcCCCceeeEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeeeEeeccccccEEEEEE
Q psy12697        375 TSFASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHDLQAHNKEIYTIKW  454 (602)
Q Consensus       375 ~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~  454 (602)
                      ..=+.|..|-.|          -..+.||...|+-++|+|.-.++++|++|..|++|.+...+.-               
T Consensus       187 ~~dLfg~~DaVV----------K~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaW---------------  241 (1202)
T KOG0292|consen  187 NSDLFGQTDAVV----------KHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAW---------------  241 (1202)
T ss_pred             chhhcCCcCeee----------eeeecccccccceEEecCCcceEEecCCcceeeEEEeccccce---------------
Confidence            000112222222          3567899999999999999999999999999999998643211               


Q ss_pred             CCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeeecccCCCeeEeeecCCc
Q psy12697        455 SPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNT  534 (602)
Q Consensus       455 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~  534 (602)
                                       -..+..+|.+.|.++-|+|..+++++.|+|++|+|||+.....+++++...+.-+.++.+|..
T Consensus       242 -----------------EvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrrendRFW~laahP~l  304 (1202)
T KOG0292|consen  242 -----------------EVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRRENDRFWILAAHPEL  304 (1202)
T ss_pred             -----------------eehhhhcccCCcceEEecCccceeEecCCCccEEEEecccccceeeeeccCCeEEEEEecCCc
Confidence                             112566788899999999999999999999999999999999999999888899999999999


Q ss_pred             eEEEeeCCCcEEEeecCCCCceeeeeccc----ccceE-------------EEEec----CCcEEEEEECCCCCeEEEe
Q psy12697        535 SFASCSTDQHIHVCKLHSDKPVKSFEGHT----TGQLV-------------HSYKG----TGGIFEVCWNSRGDKVGAS  592 (602)
Q Consensus       535 ~l~~~~~d~~i~iw~~~~~~~~~~~~~~~----~~~~~-------------~~~~~----~~~i~~l~~spdg~~l~~~  592 (602)
                      .|+.++.|+.+.||.++..++...+.+..    ....+             ..++.    ..++.++.++|...-+..+
T Consensus       305 NLfAAgHDsGm~VFkleRErpa~~v~~n~LfYvkd~~i~~~d~~t~~d~~v~~lr~~g~~~~~~~smsYNpae~~vlic  383 (1202)
T KOG0292|consen  305 NLFAAGHDSGMIVFKLERERPAYAVNGNGLFYVKDRFIRSYDLRTQKDTAVASLRRPGTLWQPPRSLSYNPAENAVLIC  383 (1202)
T ss_pred             ceeeeecCCceEEEEEcccCceEEEcCCEEEEEccceEEeeeccccccceeEeccCCCcccCCcceeeeccccCeEEEE
Confidence            78888889999999998666555443211    01112             22222    2467889999987655544

>KOG0281|consensus

Probab=100.00  E-value=2.5e-35  Score=252.49  Aligned_cols=283  Identities=24%  Similarity=0.443  Sum_probs=233.9

Q ss_pred             cCCceEEEEECCCCCeEEEeeCCceEEEEecCCceeEEEeeccCceEEEEeCCCCCCCCCCCCccccccccccCCcceEe
Q psy12697        139 HTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKGTGGIFEVCWNSRGTPPNPPESMEVDASIEIPQSKATKL  218 (602)
Q Consensus       139 h~~~V~~~~~s~d~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  218 (602)
                      ....|.|+++.  ...+++|..|++|+|||..+..++                                        ..+
T Consensus       196 ~skgVYClQYD--D~kiVSGlrDnTikiWD~n~~~c~----------------------------------------~~L  233 (499)
T KOG0281|consen  196 NSKGVYCLQYD--DEKIVSGLRDNTIKIWDKNSLECL----------------------------------------KIL  233 (499)
T ss_pred             cCCceEEEEec--chhhhcccccCceEEeccccHHHH----------------------------------------Hhh
Confidence            56789999875  568999999999999999887766                                        567


Q ss_pred             eCCCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEeeCCCCCeEEEE
Q psy12697        219 IGHESEVFICAWNPVKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFLATG  298 (602)
Q Consensus       219 ~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~  298 (602)
                      .||++.|.|+.|.  .+.+++|+.|.+|++||++++++...                ...|...|..+.|+.  .+++++
T Consensus       234 ~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~tge~l~t----------------lihHceaVLhlrf~n--g~mvtc  293 (499)
T KOG0281|consen  234 TGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNTGEPLNT----------------LIHHCEAVLHLRFSN--GYMVTC  293 (499)
T ss_pred             hcCCCcEEeeecc--ceEEEecCCCceEEEEeccCCchhhH----------------HhhhcceeEEEEEeC--CEEEEe
Confidence            8999999999996  56999999999999999999987532                234567888999975  489999


Q ss_pred             eCCCeEEEEcCCCc----ceeecccccCCeEEEEEccCCCEEEEEecCCcEEEEeCCCCceeEEeeeccCCeeeeeccCC
Q psy12697        299 SYDGYARIWTSDGS----LKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSN  374 (602)
Q Consensus       299 ~~dg~i~i~~~~~~----~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~  374 (602)
                      +.|..+.+||+...    +...+.+|...|+.+.|+  .+++++++.|.+|++|++.++++++.+.+|...+.|+.+. +
T Consensus       294 SkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd--~kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQYr-~  370 (499)
T KOG0281|consen  294 SKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQYR-D  370 (499)
T ss_pred             cCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc--cceEEEecCCceEEEEeccceeeehhhhcccccceehhcc-C
Confidence            99999999998743    345677999999999997  4599999999999999999999999999999999888763 5


Q ss_pred             CeEEEeeCCCeEEEEEcCCCceeeEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeeeEeeccccccEEEEEE
Q psy12697        375 TSFASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHDLQAHNKEIYTIKW  454 (602)
Q Consensus       375 ~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~  454 (602)
                      ..+++|+.|.+|++||+..|++++.++||+.-|.++.|+  .+.+++|+.||+|++||+..+...+...           
T Consensus       371 rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRFd--~krIVSGaYDGkikvWdl~aaldpra~~-----------  437 (499)
T KOG0281|consen  371 RLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFD--NKRIVSGAYDGKIKVWDLQAALDPRAPA-----------  437 (499)
T ss_pred             eEEEecCCCceEEEEeccccHHHHHHhchHHhhhheeec--CceeeeccccceEEEEecccccCCcccc-----------
Confidence            668899999999999999999999999999999999996  5689999999999999998653221100           


Q ss_pred             CCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCcee
Q psy12697        455 SPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCE  515 (602)
Q Consensus       455 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~~~~~~~  515 (602)
                                    ...+...+..|.+.|..+.|  |...+++++.|.+|.|||..++-.-
T Consensus       438 --------------~~~Cl~~lv~hsgRVFrLQF--D~fqIvsssHddtILiWdFl~~~~~  482 (499)
T KOG0281|consen  438 --------------STLCLRTLVEHSGRVFRLQF--DEFQIISSSHDDTILIWDFLNGPPS  482 (499)
T ss_pred             --------------cchHHHhhhhccceeEEEee--cceEEEeccCCCeEEEEEcCCCCcc
Confidence                          01122234456667777777  4467999999999999999876543

>KOG0316|consensus

Probab=100.00  E-value=1.7e-33  Score=228.41  Aligned_cols=284  Identities=19%  Similarity=0.330  Sum_probs=240.2

Q ss_pred             eeeeeeccCCceEEEEECCCCCeEEEeeCCceEEEEecCCceeEEEeeccCceEEEEeCCCCCCCCCCCCcccccccccc
Q psy12697        132 CLNTLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKGTGGIFEVCWNSRGTPPNPPESMEVDASIEIP  211 (602)
Q Consensus       132 ~~~~l~~h~~~V~~~~~s~d~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (602)
                      .++.+..|+++|.++.|+-||+|.++++.|++|++||...|.++++                                  
T Consensus         9 r~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~likt----------------------------------   54 (307)
T KOG0316|consen    9 RLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKT----------------------------------   54 (307)
T ss_pred             hceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeee----------------------------------
Confidence            4567889999999999999999999999999999999999999855                                  


Q ss_pred             CCcceEeeCCCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEeeCCC
Q psy12697        212 QSKATKLIGHESEVFICAWNPVKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNN  291 (602)
Q Consensus       212 ~~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  291 (602)
                            ..+|..+|..++.+.|+..+++|+.|..+.+||+.+++....                ...|.+.|+.+.|+.+
T Consensus        55 ------YsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr----------------~rgH~aqVNtV~fNee  112 (307)
T KOG0316|consen   55 ------YSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGKVDRR----------------FRGHLAQVNTVRFNEE  112 (307)
T ss_pred             ------ecCCCceeeeccccccccccccCCCCceEEEEEcccCeeeee----------------cccccceeeEEEecCc
Confidence                  457999999999999999999999999999999999976432                2346789999999999


Q ss_pred             CCeEEEEeCCCeEEEEcCC---CcceeecccccCCeEEEEEccCCCEEEEEecCCcEEEEeCCCCceeEEeeeccCCeee
Q psy12697        292 GSFLATGSYDGYARIWTSD---GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALD  368 (602)
Q Consensus       292 ~~~l~~~~~dg~i~i~~~~---~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~  368 (602)
                      ...+++|+.|..+++||-+   -++++.+......|.++..+  +..|++|+.||+++.||++.|.....+         
T Consensus       113 sSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~--~heIvaGS~DGtvRtydiR~G~l~sDy---------  181 (307)
T KOG0316|consen  113 SSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA--EHEIVAGSVDGTVRTYDIRKGTLSSDY---------  181 (307)
T ss_pred             ceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec--ccEEEeeccCCcEEEEEeecceeehhh---------
Confidence            9999999999999999966   45667777778889888876  567899999999999998877543211         


Q ss_pred             eeccCCCeEEEeeCCCeEEEEEcCCCceeeEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeeeEeecccccc
Q psy12697        369 VDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHDLQAHNKE  448 (602)
Q Consensus       369 ~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~  448 (602)
                                                        ...+|++++|+++++..+.++-|+++++.|-.+++.+..+++|.+.
T Consensus       182 ----------------------------------~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~  227 (307)
T KOG0316|consen  182 ----------------------------------FGHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNM  227 (307)
T ss_pred             ----------------------------------cCCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccc
Confidence                                              2357999999999999999999999999999999999999988765


Q ss_pred             EEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeeecccCCC-eeE
Q psy12697        449 IYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAP-ALD  527 (602)
Q Consensus       449 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~-v~~  527 (602)
                      -+.+.                                .+++.....+++|++||.|++||+.....+..+..+... +.+
T Consensus       228 eykld--------------------------------c~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v~v~d  275 (307)
T KOG0316|consen  228 EYKLD--------------------------------CCLNQSDTHVFSGSEDGKVYFWDLVDETQISKLSVVSTVIVTD  275 (307)
T ss_pred             eeeee--------------------------------eeecccceeEEeccCCceEEEEEeccceeeeeeccCCceeEEe
Confidence            44432                                344445567999999999999999999999999988887 899


Q ss_pred             eeecCCc-eEEEeeCCCcEEEee
Q psy12697        528 VDWQSNT-SFASCSTDQHIHVCK  549 (602)
Q Consensus       528 ~~~s~~~-~l~~~~~d~~i~iw~  549 (602)
                      +.++|.. .++++.. +.+..|-
T Consensus       276 l~~hp~~~~f~~A~~-~~~~~~~  297 (307)
T KOG0316|consen  276 LSCHPTMDDFITATG-HGDLFWY  297 (307)
T ss_pred             eecccCccceeEecC-Cceecee
Confidence            9999988 6666554 3455554

>KOG1063|consensus

Probab=100.00  E-value=1.4e-33  Score=263.15  Aligned_cols=453  Identities=20%  Similarity=0.271  Sum_probs=323.0

Q ss_pred             ceeeeeeeccCCceEEEEECCCCC---eEEEeeCCceEEEEecCCceeEEEeeccCceEEEEeCCCCCCCCCCCCccccc
Q psy12697        130 GECLNTLTRHTEPVYSVAFSPDGK---FLASGSFDKCVHIWSARTGQLVHSYKGTGGIFEVCWNSRGTPPNPPESMEVDA  206 (602)
Q Consensus       130 ~~~~~~l~~h~~~V~~~~~s~d~~---~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (602)
                      -+.+..+.||.+.|.+++|...+.   +|||+|.|..|+||.+.-+....+......   ..-.++.      ...-...
T Consensus       181 f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~---~t~~~~~------~~f~~l~  251 (764)
T KOG1063|consen  181 FARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDS---LTTLSNL------PVFMILE  251 (764)
T ss_pred             eeEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccc---cccccCC------ceeeeee
Confidence            367789999999999999987544   899999999999998864432211100000   0000000      0000000


Q ss_pred             cccccCCcceEeeCCCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEE
Q psy12697        207 SIEIPQSKATKLIGHESEVFICAWNPVKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSL  286 (602)
Q Consensus       207 ~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  286 (602)
                      .+.+.-.....+.||++.|+++.|+|.+..|++++.|.++.+|...+..........         .+............
T Consensus       252 ~i~~~is~eall~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vR---------lGe~gg~a~GF~g~  322 (764)
T KOG1063|consen  252 EIQYRISFEALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVR---------LGEVGGSAGGFWGG  322 (764)
T ss_pred             eEEEEEehhhhhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEE---------eecccccccceeeE
Confidence            111111122446699999999999999999999999999999988766433211111         11112334568889


Q ss_pred             eeCCCCCeEEEEeCCCeEEEEcCCC----cceeecccccCCeEEEEEccCCCEEEEEecCCcEEEEeCCCC----ceeEE
Q psy12697        287 DWNNNGSFLATGSYDGYARIWTSDG----SLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASG----QCEQQ  358 (602)
Q Consensus       287 ~~~~~~~~l~~~~~dg~i~i~~~~~----~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~~----~~~~~  358 (602)
                      .|+|+++.+++-+..|..++|....    .....+.+|.+.|+++.|.|.|.+|++.+.|.+-+++-.-..    ..+..
T Consensus       323 lw~~n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaR  402 (764)
T KOG1063|consen  323 LWSPNSNVIIAHGRTGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIAR  402 (764)
T ss_pred             EEcCCCCEEEEecccCcEEEEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecc
Confidence            9999999999999999999998332    234456799999999999999999999999999999864411    22333


Q ss_pred             eeeccCCeeeeeccC-CCeEEEeeCCCeEEEEEcCC--------------------------------Cce---------
Q psy12697        359 FSFHSAPALDVDWQS-NTSFASCSTDQHIHVCKLHS--------------------------------DKP---------  396 (602)
Q Consensus       359 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~i~d~~~--------------------------------~~~---------  396 (602)
                      -+.|...+.++++.+ +..|++|.....+++|+...                                .++         
T Consensus       403 PQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G  482 (764)
T KOG1063|consen  403 PQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTG  482 (764)
T ss_pred             cccccccceeeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccc
Confidence            456777889999988 77788888888899887521                                000         


Q ss_pred             -----------------------------------eeEeccCCCCeEEEEECCCCCEEEEEECC-----CeEEEEeCCCC
Q psy12697        397 -----------------------------------VKSFEGHTNEVNAIKWDPQGLLLASCSDD-----MTLKIWSLDKD  436 (602)
Q Consensus       397 -----------------------------------~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~  436 (602)
                                                         +.++.||...|.+++.+|+++++|+++..     ..|++|+..+.
T Consensus       483 ~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W  562 (764)
T KOG1063|consen  483 GEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANW  562 (764)
T ss_pred             cccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccch
Confidence                                               11223689999999999999999999864     35999999999


Q ss_pred             eeeEeeccccccEEEEEECCCCCCCCCCCcceeeeee------------eccCCccCCeEEEEEccCCCEEEEEeCCCeE
Q psy12697        437 NCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILK------------STLGQHKGPIFALKWNKRGNYILSAGVDKTT  504 (602)
Q Consensus       437 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i  504 (602)
                      .....+..|.-.|+.++|+|+++++........+.+.            ...+.|..-|.+..|+|++++++|++.|.+|
T Consensus       563 ~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~V  642 (764)
T KOG1063|consen  563 LQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKV  642 (764)
T ss_pred             hhhheecccceEEEEEEECCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceE
Confidence            8889999999999999999999987665554433221            1256799999999999999999999999999


Q ss_pred             EEEeCCCC--ceeee--ecccCCCeeEeeecCC-----c-eEEEeeCCCcEEEeecCCCC-ceeeeecccccceEEEEec
Q psy12697        505 IIWDAASG--QCEQQ--FSFHSAPALDVDWQSN-----T-SFASCSTDQHIHVCKLHSDK-PVKSFEGHTTGQLVHSYKG  573 (602)
Q Consensus       505 ~iwd~~~~--~~~~~--~~~~~~~v~~~~~s~~-----~-~l~~~~~d~~i~iw~~~~~~-~~~~~~~~~~~~~~~~~~~  573 (602)
                      ++|.....  +.+..  ...+..+|+.+++.|-     + .+++|-..|.|.+|...... ................+..
T Consensus       643 kVW~~~~~~d~~i~~~a~~~~~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~~~~~~~~~~~~~~~~~~~l~~~~~~  722 (764)
T KOG1063|consen  643 KVWEEPDLRDKYISRFACLKFSLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRRKREHRQVTVGTFNLDTRLCATIGP  722 (764)
T ss_pred             EEEeccCchhhhhhhhchhccCCceeeEEeeccccccccceEEEEecccEEEEEecccccccccceeeeeccccccccCh
Confidence            99998877  44432  2347889999998762     2 57888899999999965221 1111110111112222333


Q ss_pred             CCcEEEEEECCC----------CCeEEEeccCCeEEe
Q psy12697        574 TGGIFEVCWNSR----------GDKVGASASDGSVFK  600 (602)
Q Consensus       574 ~~~i~~l~~spd----------g~~l~~~~~dg~v~i  600 (602)
                      .+.|..++|+|.          ...|++|++|.+++|
T Consensus       723 ~~aV~rl~w~p~~~~~~~~~~~~l~la~~g~D~~vri  759 (764)
T KOG1063|consen  723 DSAVNRLLWRPTCSDDWVEDKEWLNLAVGGDDESVRI  759 (764)
T ss_pred             HHhhheeEeccccccccccccceeEEeeecccceeEE
Confidence            567999999975          235699999999987

>KOG0316|consensus

Probab=100.00  E-value=1.4e-33  Score=228.91  Aligned_cols=271  Identities=19%  Similarity=0.307  Sum_probs=238.6

Q ss_pred             CCCceeEEeeCCCCCeEEEEeCCCeEEEEcC-CCcceeecccccCCeEEEEEccCCCEEEEEecCCcEEEEeCCCCceeE
Q psy12697        279 SNKDVTSLDWNNNGSFLATGSYDGYARIWTS-DGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQ  357 (602)
Q Consensus       279 ~~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~  357 (602)
                      +.+.|.++.|+-+|++.++++.|.+|++|+. ++.++++..+|...|..++.+.|...+++++.|..+.+||+.+|+..+
T Consensus        16 ~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~R   95 (307)
T KOG0316|consen   16 AQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGKVDR   95 (307)
T ss_pred             cccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEcccCeeee
Confidence            4688999999999999999999999999995 589999999999999999999999999999999999999999999999


Q ss_pred             EeeeccCCeeeeeccCCC-eEEEeeCCCeEEEEEcCC--CceeeEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEeCC
Q psy12697        358 QFSFHSAPALDVDWQSNT-SFASCSTDQHIHVCKLHS--DKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLD  434 (602)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~i~d~~~--~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~  434 (602)
                      .+.+|...+..+.|..+. .+++|+.|..+++||.++  .+|++.+....+.|.++..+  +..+++|+.||++|.||++
T Consensus        96 r~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~--~heIvaGS~DGtvRtydiR  173 (307)
T KOG0316|consen   96 RFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA--EHEIVAGSVDGTVRTYDIR  173 (307)
T ss_pred             ecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec--ccEEEeeccCCcEEEEEee
Confidence            999999999999999875 578899999999999876  47889998888999999886  5689999999999999999


Q ss_pred             CCeeeEeeccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCce
Q psy12697        435 KDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQC  514 (602)
Q Consensus       435 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~~~~~~  514 (602)
                      .++.....-                                    ..+|++++||+|++..+.++.|+++++.|-++|++
T Consensus       174 ~G~l~sDy~------------------------------------g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGkl  217 (307)
T KOG0316|consen  174 KGTLSSDYF------------------------------------GHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKL  217 (307)
T ss_pred             cceeehhhc------------------------------------CCcceeEEecCCCCEEEEeeccceeeecccchhHH
Confidence            887654432                                    35788899999999999999999999999999999


Q ss_pred             eeeecccCCCeeE--eeecCCc-eEEEeeCCCcEEEeecCCCCceeeeecccccceEEEEecCCc-EEEEEECCCCCeEE
Q psy12697        515 EQQFSFHSAPALD--VDWQSNT-SFASCSTDQHIHVCKLHSDKPVKSFEGHTTGQLVHSYKGTGG-IFEVCWNSRGDKVG  590 (602)
Q Consensus       515 ~~~~~~~~~~v~~--~~~s~~~-~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~l~~spdg~~l~  590 (602)
                      ++.+++|.+.-..  .+++... .+++|+.||.|++||+.....+..++.+.           .. +.++++.|.-..++
T Consensus       218 L~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~-----------~v~v~dl~~hp~~~~f~  286 (307)
T KOG0316|consen  218 LKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQISKLSVVS-----------TVIVTDLSCHPTMDDFI  286 (307)
T ss_pred             HHHhcccccceeeeeeeecccceeEEeccCCceEEEEEeccceeeeeeccCC-----------ceeEEeeecccCcccee
Confidence            9999999886544  4555555 99999999999999998888777776553           33 78999999988887


Q ss_pred             EeccCCeE
Q psy12697        591 ASASDGSV  598 (602)
Q Consensus       591 ~~~~dg~v  598 (602)
                      ++...+.+
T Consensus       287 ~A~~~~~~  294 (307)
T KOG0316|consen  287 TATGHGDL  294 (307)
T ss_pred             EecCCcee
Confidence            77766544

>KOG0640|consensus

Probab=100.00  E-value=5.8e-34  Score=240.51  Aligned_cols=405  Identities=21%  Similarity=0.320  Sum_probs=283.3

Q ss_pred             cchhhhhhhhhhhcCceeeeeccccccCCccCCCCCCcCCchhHHHHHHhhceeEEEeeeeCCCCccccccccccccccc
Q psy12697          6 DEVNFLVYRYLQESGFQHSAYTFGIESHISQSNIDGALVPPAALLSIIQKGLQYTEAEISVGENGQEQRPTESLSLIDAV   85 (602)
Q Consensus         6 ~e~n~li~ryL~e~g~~~~a~~~~~e~~~~~~~~~~~~~~~~~li~~~qk~l~~~~~e~~~~~~~~~~~~~~~~~~~~~~   85 (602)
                      +.+-.||---|.=-|++.-|..+......+.+    ...|+..|..++.+|++..+............-...+.  ..++
T Consensus        12 e~lyrLiisqL~ydg~~qiA~~lan~~~~~~~----~~~PserLl~lv~~gmq~~~d~~~~~~~~S~~~~t~p~--~~gi   85 (430)
T KOG0640|consen   12 EILYRLIISQLRYDGLSQIASALANATMTPAN----ICAPSERLLHLVAKGMQAENDGDLRAVSSSVLLITTPV--TAGI   85 (430)
T ss_pred             HHHHHHHHHHHhhccHHHHHHHHHHhhcCcCC----CCCCHHHHHHHHHHHhhcccCcceecccccccceeccC--cCce
Confidence            44556788888888999988888876555543    34689999999999998866443332211100000000  0000


Q ss_pred             hhhHHHhhhhhhhccccCCCCCCCcccCCcceeccceeeeecccceeeeeeeccCCceEEEEECCCCCeEEEeeCCceEE
Q psy12697         86 LPDFVANRQNQLNSQRTNNPSTGPAITNGEEVHRLTLPLWDVERGECLNTLTRHTEPVYSVAFSPDGKFLASGSFDKCVH  165 (602)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vwd~~~~~~~~~l~~h~~~V~~~~~s~d~~~l~s~~~d~~v~  165 (602)
                      -.++.+..       +...|    - +                ..-....+..|++++.+.+|||||.++|||+.|.+|+
T Consensus        86 Dle~dada-------q~~s~----e-~----------------~~yEt~ylt~HK~~cR~aafs~DG~lvATGsaD~SIK  137 (430)
T KOG0640|consen   86 DLEFDADA-------QGSSP----E-P----------------SEYETKYLTSHKSPCRAAAFSPDGSLVATGSADASIK  137 (430)
T ss_pred             eeeecccc-------ccCCC----C-C----------------cccceEEEeecccceeeeeeCCCCcEEEccCCcceEE
Confidence            00010000       00000    0 0                1112345788999999999999999999999999999


Q ss_pred             EEecCCceeEEEeeccCceEEEEeCCCCCCCCCCCCccccccccccCCcceEeeCCCcceEEEEEcCCCCEEEEeeCCCc
Q psy12697        166 IWSARTGQLVHSYKGTGGIFEVCWNSRGTPPNPPESMEVDASIEIPQSKATKLIGHESEVFICAWNPVKDFLASGSGDST  245 (602)
Q Consensus       166 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~  245 (602)
                      |.|++.--...  +.    ..+  .+.+              -...-...+++..|..+|.++.|+|....|++++.|++
T Consensus       138 ildvermlaks--~~----~em--~~~~--------------~qa~hPvIRTlYDH~devn~l~FHPre~ILiS~srD~t  195 (430)
T KOG0640|consen  138 ILDVERMLAKS--KP----KEM--ISGD--------------TQARHPVIRTLYDHVDEVNDLDFHPRETILISGSRDNT  195 (430)
T ss_pred             Eeehhhhhhhc--ch----hhh--ccCC--------------cccCCceEeehhhccCcccceeecchhheEEeccCCCe
Confidence            99987311000  00    000  0000              00001223677889999999999999999999999999


Q ss_pred             EEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEeeCCCCCeEEEEeCCCeEEEEcCCCccee----eccccc
Q psy12697        246 ARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFLATGSYDGYARIWTSDGSLKS----TLGQHK  321 (602)
Q Consensus       246 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~----~~~~~~  321 (602)
                      |+++|+.....+....              ......+|.++.|+|.|.++++|..-..+++||++.-...    .-.+|.
T Consensus       196 vKlFDfsK~saKrA~K--------------~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht  261 (430)
T KOG0640|consen  196 VKLFDFSKTSAKRAFK--------------VFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHT  261 (430)
T ss_pred             EEEEecccHHHHHHHH--------------HhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccccc
Confidence            9999997654322111              1122467999999999999999999999999998743221    234789


Q ss_pred             CCeEEEEEccCCCEEEEEecCCcEEEEeCCCCceeEEeeeccCCeeeeeccCCCeEEEeeCCCeEEEEEcCCCceeeEec
Q psy12697        322 GPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFE  401 (602)
Q Consensus       322 ~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~  401 (602)
                      +.|+++.+++.++..++++.||.|++||--+++|+.++.                                        +
T Consensus       262 ~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~----------------------------------------~  301 (430)
T KOG0640|consen  262 GAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIG----------------------------------------N  301 (430)
T ss_pred             cceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHH----------------------------------------h
Confidence            999999999999999999999999999987777765543                                        2


Q ss_pred             cCC-CCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeeeEeeccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCcc
Q psy12697        402 GHT-NEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHK  480 (602)
Q Consensus       402 ~~~-~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  480 (602)
                      .|. ..|.+..|..+|+++++.+.|..+++|.+.+++++.++.+....                             +..
T Consensus       302 AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~t-----------------------------grq  352 (430)
T KOG0640|consen  302 AHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYTGAGTT-----------------------------GRQ  352 (430)
T ss_pred             hcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEEEecCCcc-----------------------------cch
Confidence            343 36889999999999999999999999999999999888654211                             011


Q ss_pred             CCeEEEEEccCCCEEEEEeC-CCeEEEEeCCCCceeeeec-ccCCCeeEeeecCCc-eEEEeeCCCcEEEee
Q psy12697        481 GPIFALKWNKRGNYILSAGV-DKTTIIWDAASGQCEQQFS-FHSAPALDVDWQSNT-SFASCSTDQHIHVCK  549 (602)
Q Consensus       481 ~~v~~i~~s~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~s~~~-~l~~~~~d~~i~iw~  549 (602)
                      .--+...|+....|++.-.+ .+.+.-||.++...+..+. +|.+.+..+.-||.+ -+++|+.|-.+++|-
T Consensus       353 ~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~raRFWy  424 (430)
T KOG0640|consen  353 KHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAFMTCSDDFRARFWY  424 (430)
T ss_pred             hhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCCceeeecccceeeeee
Confidence            11123345555666665543 4679999999987765443 699999999999999 999999999999996

>KOG0282|consensus

Probab=100.00  E-value=1.2e-34  Score=259.32  Aligned_cols=281  Identities=21%  Similarity=0.383  Sum_probs=244.3

Q ss_pred             ccCCCCceeEEeeCC-CCCeEEEEeCCCeEEEEcCC--CcceeecccccCCeEEEEEccCCCEEEEEecCCcEEEEeCCC
Q psy12697        276 EVPSNKDVTSLDWNN-NGSFLATGSYDGYARIWTSD--GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAAS  352 (602)
Q Consensus       276 ~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~~~~--~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~  352 (602)
                      ...|...|+++.|.| .+.+|++++.|+.|++|++.  +.++.++.+|..+|.+++|+++|..+++++.|+.+++||+++
T Consensus       210 ~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtET  289 (503)
T KOG0282|consen  210 LSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTET  289 (503)
T ss_pred             ccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeeeecccc
Confidence            345788999999999 89999999999999999964  788999999999999999999999999999999999999999


Q ss_pred             CceeEEeeeccCCeeeeeccCCC--eEEEeeCCCeEEEEEcCCCceeeEeccCCCCeEEEEECCCCCEEEEEECCCeEEE
Q psy12697        353 GQCEQQFSFHSAPALDVDWQSNT--SFASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKI  430 (602)
Q Consensus       353 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i  430 (602)
                      |++...+.. ...+.++.|.|++  .|++|+.|+.|+.||+++++.++.+..|-+.|..+.|-++|+++++.++|++++|
T Consensus       290 G~~~~~f~~-~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSDdks~ri  368 (503)
T KOG0282|consen  290 GQVLSRFHL-DKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRI  368 (503)
T ss_pred             ceEEEEEec-CCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeeccCccEEE
Confidence            999988864 3467788888874  6999999999999999999999999999999999999999999999999999999


Q ss_pred             EeCCCCeeeEeeccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCCCeEEEEeCC
Q psy12697        431 WSLDKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAA  510 (602)
Q Consensus       431 wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~~  510 (602)
                      |+.+....+.....+                                 +.....++..+|++++++.-+.|..|.++.+.
T Consensus       369 We~~~~v~ik~i~~~---------------------------------~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~  415 (503)
T KOG0282|consen  369 WENRIPVPIKNIADP---------------------------------EMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTV  415 (503)
T ss_pred             EEcCCCccchhhcch---------------------------------hhccCcceecCCCCCeehhhccCceEEEEecc
Confidence            999876554433211                                 23345577888899999999999999999875


Q ss_pred             CC---ceeeeecccCC--CeeEeeecCCc-eEEEeeCCCcEEEeecCCCCceeeeecccccceEEEEecCCcEEEEEECC
Q psy12697        511 SG---QCEQQFSFHSA--PALDVDWQSNT-SFASCSTDQHIHVCKLHSDKPVKSFEGHTTGQLVHSYKGTGGIFEVCWNS  584 (602)
Q Consensus       511 ~~---~~~~~~~~~~~--~v~~~~~s~~~-~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp  584 (602)
                      ..   .....+.+|..  .-..+.||||| +|++|+.||.+.+||.++.+.+..++.|.           +++..+.|.|
T Consensus       416 ~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~-----------~~ci~v~wHP  484 (503)
T KOG0282|consen  416 PPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHD-----------QPCIGVDWHP  484 (503)
T ss_pred             cccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccCC-----------cceEEEEecC
Confidence            43   23356777754  46678999999 99999999999999999999998888875           7799999999


Q ss_pred             CC-CeEEEeccCCeEEee
Q psy12697        585 RG-DKVGASASDGSVFKN  601 (602)
Q Consensus       585 dg-~~l~~~~~dg~v~i~  601 (602)
                      .. ..+|+|+-||.|+++
T Consensus       485 ~e~Skvat~~w~G~Ikiw  502 (503)
T KOG0282|consen  485 VEPSKVATCGWDGLIKIW  502 (503)
T ss_pred             CCcceeEecccCceeEec
Confidence            76 679999999999885

>KOG0313|consensus

Probab=100.00  E-value=6.7e-33  Score=240.57  Aligned_cols=309  Identities=23%  Similarity=0.386  Sum_probs=241.1

Q ss_pred             cCCceEEEEECCCCCeEEEeeCCceEEEEecCCceeEEEeeccCceEEEEeCCCCCCCCCCCCccccccccccCCcceEe
Q psy12697        139 HTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKGTGGIFEVCWNSRGTPPNPPESMEVDASIEIPQSKATKL  218 (602)
Q Consensus       139 h~~~V~~~~~s~d~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  218 (602)
                      |.+.|.++...  +++++||++||.++|||.. |+..                                        ..+
T Consensus       104 hdDWVSsv~~~--~~~IltgsYDg~~riWd~~-Gk~~----------------------------------------~~~  140 (423)
T KOG0313|consen  104 HDDWVSSVKGA--SKWILTGSYDGTSRIWDLK-GKSI----------------------------------------KTI  140 (423)
T ss_pred             chhhhhhhccc--CceEEEeecCCeeEEEecC-CceE----------------------------------------EEE
Confidence            77888888777  8899999999999999974 4444                                        456


Q ss_pred             eCCCcceEEEEEcCCC---CEEEEeeCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEeeCCCCCeE
Q psy12697        219 IGHESEVFICAWNPVK---DFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFL  295 (602)
Q Consensus       219 ~~h~~~v~~~~~~~~~---~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l  295 (602)
                      .||.++|..++|.-.+   ..|++++.|.++++|.++.+........            ....|...|.+++..++|..+
T Consensus       141 ~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~------------~~~GHk~~V~sVsv~~sgtr~  208 (423)
T KOG0313|consen  141 VGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALK------------VCRGHKRSVDSVSVDSSGTRF  208 (423)
T ss_pred             ecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHh------------HhcccccceeEEEecCCCCeE
Confidence            7899999988886544   3599999999999999987765422211            112678999999999999999


Q ss_pred             EEEeCCCeEEEEcCCCcceeecccccCCeEEEEEccCCCEEEEEecCCcEEEEeCCCCceeEEeeeccCCeeeeeccCCC
Q psy12697        296 ATGSYDGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNT  375 (602)
Q Consensus       296 ~~~~~dg~i~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~  375 (602)
                      ++|+.|..|.+|+........+.....       -+.++.-         +-=...++.++..+.+|..+|.++.|++..
T Consensus       209 ~SgS~D~~lkiWs~~~~~~~~~E~~s~-------~rrk~~~---------~~~~~~~r~P~vtl~GHt~~Vs~V~w~d~~  272 (423)
T KOG0313|consen  209 CSGSWDTMLKIWSVETDEEDELESSSN-------RRRKKQK---------REKEGGTRTPLVTLEGHTEPVSSVVWSDAT  272 (423)
T ss_pred             EeecccceeeecccCCCccccccccch-------hhhhhhh---------hhhcccccCceEEecccccceeeEEEcCCC
Confidence            999999999999944333322222111       0111100         000123456677889999999999999999


Q ss_pred             eEEEeeCCCeEEEEEcCCCceeeEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeeeEeeccccccEEEEEEC
Q psy12697        376 SFASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHDLQAHNKEIYTIKWS  455 (602)
Q Consensus       376 ~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~  455 (602)
                      .+++++.|.+|+.||+.++.....+.+ ...+.++.++|..++|++|+.|..|++||.+++.--         +      
T Consensus       273 v~yS~SwDHTIk~WDletg~~~~~~~~-~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs---------~------  336 (423)
T KOG0313|consen  273 VIYSVSWDHTIKVWDLETGGLKSTLTT-NKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGS---------V------  336 (423)
T ss_pred             ceEeecccceEEEEEeecccceeeeec-CcceeEeecccccceeeecCCCCceeecCCCCCCCc---------e------
Confidence            999999999999999999998877774 456999999999999999999999999999875211         1      


Q ss_pred             CCCCCCCCCCcceeeeeeeccCCccCCeEEEEEcc-CCCEEEEEeCCCeEEEEeCCCCc-eeeeecccCCCeeEeeecCC
Q psy12697        456 PTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNK-RGNYILSAGVDKTTIIWDAASGQ-CEQQFSFHSAPALDVDWQSN  533 (602)
Q Consensus       456 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~-~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~v~~~~~s~~  533 (602)
                                      ....+.+|.+.|.++.|+| +...|++|+.|+++++||+++.+ ++..+.+|.+.|.++.|...
T Consensus       337 ----------------v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~~~  400 (423)
T KOG0313|consen  337 ----------------VSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWNEG  400 (423)
T ss_pred             ----------------eEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEeccCC
Confidence                            1123344666666666666 34568899999999999999887 89999999999999999987


Q ss_pred             ceEEEeeCCCcEEEeec
Q psy12697        534 TSFASCSTDQHIHVCKL  550 (602)
Q Consensus       534 ~~l~~~~~d~~i~iw~~  550 (602)
                      +.+++|+.|++|+|+.-
T Consensus       401 ~~IvSGGaD~~l~i~~~  417 (423)
T KOG0313|consen  401 GLIVSGGADNKLRIFKG  417 (423)
T ss_pred             ceEEeccCcceEEEecc
Confidence            79999999999999873

>KOG0278|consensus

Probab=100.00  E-value=5.1e-34  Score=233.49  Aligned_cols=290  Identities=22%  Similarity=0.390  Sum_probs=252.9

Q ss_pred             eeeeccCCceEEEEECC---CCCeEEEeeCCceEEEEecCCceeEEEeeccCceEEEEeCCCCCCCCCCCCccccccccc
Q psy12697        134 NTLTRHTEPVYSVAFSP---DGKFLASGSFDKCVHIWSARTGQLVHSYKGTGGIFEVCWNSRGTPPNPPESMEVDASIEI  210 (602)
Q Consensus       134 ~~l~~h~~~V~~~~~s~---d~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (602)
                      .+..||+.+|..++|||   +|-+|++++.|+.-.+-+=++|..+.+                                 
T Consensus         8 l~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigt---------------------------------   54 (334)
T KOG0278|consen    8 LTCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGT---------------------------------   54 (334)
T ss_pred             eEEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEe---------------------------------
Confidence            45678999999999996   899999999999988888888887744                                 


Q ss_pred             cCCcceEeeCCCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEeeCC
Q psy12697        211 PQSKATKLIGHESEVFICAWNPVKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNN  290 (602)
Q Consensus       211 ~~~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  290 (602)
                             +.||.+.|+....+.+-..-++++.|-+.++||.-++.....+                 .|..-|.+++|+.
T Consensus        55 -------feghkgavw~~~l~~na~~aasaaadftakvw~a~tgdelhsf-----------------~hkhivk~~af~~  110 (334)
T KOG0278|consen   55 -------FEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGDELHSF-----------------EHKHIVKAVAFSQ  110 (334)
T ss_pred             -------eeccCcceeeeecCchhhhhhhhcccchhhhhhhhhhhhhhhh-----------------hhhheeeeEEecc
Confidence                   5679999999999988888999999999999999887654322                 2345689999999


Q ss_pred             CCCeEEEEeCCCeEEEEcCCC--cceeecccccCCeEEEEEccCCCEEEEEecCCcEEEEeCCCCceeEEeeeccCCeee
Q psy12697        291 NGSFLATGSYDGYARIWTSDG--SLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALD  368 (602)
Q Consensus       291 ~~~~l~~~~~dg~i~i~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~  368 (602)
                      |.++|++|+.+..+++||++.  .....+.+|.+.|..+.|....+.+++++.|++|++||.+++..++.+.. ..++.+
T Consensus       111 ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~-~s~VtS  189 (334)
T KOG0278|consen  111 DSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLEF-NSPVTS  189 (334)
T ss_pred             cchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEec-CCCCcc
Confidence            999999999999999999873  45667889999999999999999999999999999999999999998874 467899


Q ss_pred             eeccCCCeEEEeeCCCeEEEEEcCCCceeeEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeeeEeecccccc
Q psy12697        369 VDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHDLQAHNKE  448 (602)
Q Consensus       369 ~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~  448 (602)
                      +..++++.+++....+.|.+||..+..+++.++.. ..|.+..++|+...+++|+.|..++.||..+++.+..+      
T Consensus       190 lEvs~dG~ilTia~gssV~Fwdaksf~~lKs~k~P-~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~------  262 (334)
T KOG0278|consen  190 LEVSQDGRILTIAYGSSVKFWDAKSFGLLKSYKMP-CNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSY------  262 (334)
T ss_pred             eeeccCCCEEEEecCceeEEeccccccceeeccCc-cccccccccCCCceEEecCcceEEEEEeccCCceeeec------
Confidence            99999999999999999999999999988887743 45899999999999999999999999999999877653      


Q ss_pred             EEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCcee
Q psy12697        449 IYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCE  515 (602)
Q Consensus       449 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~~~~~~~  515 (602)
                                                 ..+|.++|.|+.|+|||...++|+.||+|++|....++..
T Consensus       263 ---------------------------nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~~~  302 (334)
T KOG0278|consen  263 ---------------------------NKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGKTY  302 (334)
T ss_pred             ---------------------------ccCCCCceEEEEECCCCceeeccCCCceEEEEEecCCCch
Confidence                                       1247778888888889999999999999999998766543

>KOG0643|consensus

Probab=100.00  E-value=5.8e-33  Score=229.67  Aligned_cols=285  Identities=18%  Similarity=0.319  Sum_probs=233.0

Q ss_pred             eeeccCCceEEEEECCCCCeEEEeeCCceEEEEecCCceeEEEeeccCceEEEEeCCCCCCCCCCCCccccccccccCCc
Q psy12697        135 TLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKGTGGIFEVCWNSRGTPPNPPESMEVDASIEIPQSK  214 (602)
Q Consensus       135 ~l~~h~~~V~~~~~s~d~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  214 (602)
                      .|.||..+++.+.++.+|.+|.+++.|.++.||-..+|+.+.                                      
T Consensus         5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlG--------------------------------------   46 (327)
T KOG0643|consen    5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLG--------------------------------------   46 (327)
T ss_pred             ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceee--------------------------------------
Confidence            368999999999999999999999999999999988888874                                      


Q ss_pred             ceEeeCCCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEeeCCCCCe
Q psy12697        215 ATKLIGHESEVFICAWNPVKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSF  294 (602)
Q Consensus       215 ~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  294 (602)
                        ++.||++.|+++...-+.+++++|+.|.++++||++++++.....                 ...+|..+.|+++|++
T Consensus        47 --ty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k-----------------~~~~Vk~~~F~~~gn~  107 (327)
T KOG0643|consen   47 --TYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATWK-----------------TNSPVKRVDFSFGGNL  107 (327)
T ss_pred             --eecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEee-----------------cCCeeEEEeeccCCcE
Confidence              456899999999999999999999999999999999998653322                 2477999999999998


Q ss_pred             EEEEeCC-----CeEEEEcCC--------CcceeecccccCCeEEEEEccCCCEEEEEecCCcEEEEeCCCCceeEEeee
Q psy12697        295 LATGSYD-----GYARIWTSD--------GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSF  361 (602)
Q Consensus       295 l~~~~~d-----g~i~i~~~~--------~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~  361 (602)
                      ++....+     +.|.++|++        ......+..+.+.++.+-|.|-+++|++|..||.|..||+++++..     
T Consensus       108 ~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~-----  182 (327)
T KOG0643|consen  108 ILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKEL-----  182 (327)
T ss_pred             EEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCcee-----
Confidence            8877654     679999876        2335667778899999999999999999999999999999887543     


Q ss_pred             ccCCeeeeeccCCCeEEEeeCCCeEEEEEcCCCceeeEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeeeEe
Q psy12697        362 HSAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHD  441 (602)
Q Consensus       362 ~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~  441 (602)
                                                         +...+.|...|+.++++|+..++++++.|.+-++||..+.+.+++
T Consensus       183 -----------------------------------v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kt  227 (327)
T KOG0643|consen  183 -----------------------------------VDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKT  227 (327)
T ss_pred             -----------------------------------eechhhhccccccccccCCcceEEecccCccceeeeccceeeEEE
Confidence                                               233345788899999999999999999999999999999988888


Q ss_pred             eccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCCCe--------------EEEE
Q psy12697        442 LQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKT--------------TIIW  507 (602)
Q Consensus       442 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~--------------i~iw  507 (602)
                      +..                                   ..||++.+++|-...++.|+.-..              -++|
T Consensus       228 y~t-----------------------------------e~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFy  272 (327)
T KOG0643|consen  228 YTT-----------------------------------ERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFY  272 (327)
T ss_pred             eee-----------------------------------cccccceecccccceEEecCCceeeeeeeecccccchhhhHH
Confidence            753                                   345666666665555554432211              1233


Q ss_pred             eCCCCceeeeecccCCCeeEeeecCCc-eEEEeeCCCcEEEeecC
Q psy12697        508 DAASGQCEQQFSFHSAPALDVDWQSNT-SFASCSTDQHIHVCKLH  551 (602)
Q Consensus       508 d~~~~~~~~~~~~~~~~v~~~~~s~~~-~l~~~~~d~~i~iw~~~  551 (602)
                      ++-..+.+..+++|-+||++++|+|+| ..++|+.||.|++.-++
T Consensus       273 h~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR~h~Fd  317 (327)
T KOG0643|consen  273 HLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRLHHFD  317 (327)
T ss_pred             HHHHHHHhccccccccCcceeEECCCCcccccCCCCceEEEEEec
Confidence            333334567788999999999999999 99999999999998654

>KOG0313|consensus

Probab=100.00  E-value=4.9e-33  Score=241.40  Aligned_cols=275  Identities=25%  Similarity=0.452  Sum_probs=236.4

Q ss_pred             cCCCCceeEEeeCCCCCeEEEEeCCCeEEEEcCCCcceeecccccCCeEEEEEccCC---CEEEEEecCCcEEEEeCCCC
Q psy12697        277 VPSNKDVTSLDWNNNGSFLATGSYDGYARIWTSDGSLKSTLGQHKGPIFALKWNKRG---NYILSAGVDKTTIIWDAASG  353 (602)
Q Consensus       277 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~i~~~~~~~~~---~~l~~~~~dg~i~~wd~~~~  353 (602)
                      ..|..-|.++...  ++.|++|++||.+++||..|+....+.+|.++|.+++|....   ..+++++.|.++++|..+.+
T Consensus       102 ~~hdDWVSsv~~~--~~~IltgsYDg~~riWd~~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~  179 (423)
T KOG0313|consen  102 FLHDDWVSSVKGA--SKWILTGSYDGTSRIWDLKGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVG  179 (423)
T ss_pred             ccchhhhhhhccc--CceEEEeecCCeeEEEecCCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCc
Confidence            4467778888877  679999999999999999999999999999999988885433   35999999999999988876


Q ss_pred             ce----eEEeeeccCCeeeeeccCC-CeEEEeeCCCeEEEEEcCC-------------------------CceeeEeccC
Q psy12697        354 QC----EQQFSFHSAPALDVDWQSN-TSFASCSTDQHIHVCKLHS-------------------------DKPVKSFEGH  403 (602)
Q Consensus       354 ~~----~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~i~d~~~-------------------------~~~~~~~~~~  403 (602)
                      +.    +..-.+|...|.++...++ ..+++|+.|.+|.+|+..+                         +.|+..+.+|
T Consensus       180 ~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GH  259 (423)
T KOG0313|consen  180 ENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGH  259 (423)
T ss_pred             hhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEeccc
Confidence            53    3334589999999996665 6799999999999999321                         2467788999


Q ss_pred             CCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeeeEeeccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCe
Q psy12697        404 TNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPI  483 (602)
Q Consensus       404 ~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  483 (602)
                      ..+|.++.|++ ...+++++.|.+|+.||+.++....++..                                   ...+
T Consensus       260 t~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~-----------------------------------~ksl  303 (423)
T KOG0313|consen  260 TEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTT-----------------------------------NKSL  303 (423)
T ss_pred             ccceeeEEEcC-CCceEeecccceEEEEEeecccceeeeec-----------------------------------Ccce
Confidence            99999999998 66899999999999999999888776653                                   3456


Q ss_pred             EEEEEccCCCEEEEEeCCCeEEEEeCCCCc---eeeeecccCCCeeEeeecCCc--eEEEeeCCCcEEEeecCCCC-cee
Q psy12697        484 FALKWNKRGNYILSAGVDKTTIIWDAASGQ---CEQQFSFHSAPALDVDWQSNT--SFASCSTDQHIHVCKLHSDK-PVK  557 (602)
Q Consensus       484 ~~i~~s~~~~~l~s~~~dg~i~iwd~~~~~---~~~~~~~~~~~v~~~~~s~~~--~l~~~~~d~~i~iw~~~~~~-~~~  557 (602)
                      +++..+|..++|++|+.|..+++||.+++.   ..+.+.+|.+.|.++.|+|..  .|++++.|+++++||+++.+ ++.
T Consensus       304 ~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~ply  383 (423)
T KOG0313|consen  304 NCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLY  383 (423)
T ss_pred             eEeecccccceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcce
Confidence            777788888999999999999999998763   347899999999999999988  89999999999999999987 888


Q ss_pred             eeecccccceEEEEecCCcEEEEEECCCCCeEEEeccCCeEEee
Q psy12697        558 SFEGHTTGQLVHSYKGTGGIFEVCWNSRGDKVGASASDGSVFKN  601 (602)
Q Consensus       558 ~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~v~i~  601 (602)
                      .+.+|.           ..|.++.|+ ++..+++|+.|.+++|.
T Consensus       384 dI~~h~-----------DKvl~vdW~-~~~~IvSGGaD~~l~i~  415 (423)
T KOG0313|consen  384 DIAGHN-----------DKVLSVDWN-EGGLIVSGGADNKLRIF  415 (423)
T ss_pred             eeccCC-----------ceEEEEecc-CCceEEeccCcceEEEe
Confidence            888885           779999998 67789999999999985

>KOG2106|consensus

Probab=100.00  E-value=2.6e-31  Score=239.02  Aligned_cols=378  Identities=18%  Similarity=0.297  Sum_probs=289.0

Q ss_pred             eccceeeeecccceeeeeeeccCCceEEEEECC--CCCeEEEe--eCCceEEEEecCCceeEEEeeccCceEEEEeCCCC
Q psy12697        118 HRLTLPLWDVERGECLNTLTRHTEPVYSVAFSP--DGKFLASG--SFDKCVHIWSARTGQLVHSYKGTGGIFEVCWNSRG  193 (602)
Q Consensus       118 ~~~~i~vwd~~~~~~~~~l~~h~~~V~~~~~s~--d~~~l~s~--~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  193 (602)
                      -++.+++||..+-..++.+-.-...|+|++||+  .|.+|+..  +.+..+.|||++.+......               
T Consensus       132 ~~phvriWdsv~L~TL~V~g~f~~GV~~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~~~~~~v---------------  196 (626)
T KOG2106|consen  132 LQPHVRIWDSVTLSTLHVIGFFDRGVTCVAFSKINGGSLLCAVDDSNPHMLSVWDWQKKAKLGPV---------------  196 (626)
T ss_pred             CCCeeeecccccceeeeeeccccccceeeeecccCCCceEEEecCCCccccchhhchhhhccCcc---------------
Confidence            357899999999999999988899999999998  45566554  46788999999887765332               


Q ss_pred             CCCCCCCCccccccccccCCcceEeeCCCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCccceEEEEEEecCC
Q psy12697        194 TPPNPPESMEVDASIEIPQSKATKLIGHESEVFICAWNPVKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKG  273 (602)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~  273 (602)
                                               ...+..|..+.|+|.+..|+.....+.+.+|+.+.+.......+           
T Consensus       197 -------------------------k~sne~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l~k~~~~-----------  240 (626)
T KOG2106|consen  197 -------------------------KTSNEVVFLATFHPTDPNLIITCGKGHLYFWTLRGGSLVKRQGI-----------  240 (626)
T ss_pred             -------------------------eeccceEEEEEeccCCCcEEEEeCCceEEEEEccCCceEEEeec-----------
Confidence                                     23456688899999887777777789999999887754321111           


Q ss_pred             CcccCCCCceeEEeeCCCCCeEEEEeCCCeEEEEcCCCc-ceeecccccCCeEEEEEccCCCEEEEEecCCcEEEEeCCC
Q psy12697        274 GTEVPSNKDVTSLDWNNNGSFLATGSYDGYARIWTSDGS-LKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAAS  352 (602)
Q Consensus       274 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~  352 (602)
                       .+......|.|++|.++|. +++|..+|.|.||+..+. ..+....|.+.|.+++...+|. |++|+.|..|..|| ..
T Consensus       241 -fek~ekk~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~Gt-llSGgKDRki~~Wd-~~  316 (626)
T KOG2106|consen  241 -FEKREKKFVLCVTFLENGD-VITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGT-LLSGGKDRKIILWD-DN  316 (626)
T ss_pred             -cccccceEEEEEEEcCCCC-EEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCcc-EeecCccceEEecc-cc
Confidence             1112236799999999986 889999999999998743 3344448999999999999986 55699999999999 44


Q ss_pred             CceeEEe--eeccCCeeeeeccCCCeEEEeeCCCeEEEEEcCCCceeeEeccCCCCeEEEEECCCCCEEEEEECCCeEEE
Q psy12697        353 GQCEQQF--SFHSAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKI  430 (602)
Q Consensus       353 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i  430 (602)
                      -+.++..  +...+++..++-...+ +++|...+.|..=.++++-.+ ...+|......++.+|+...+++++.|+.+++
T Consensus       317 y~k~r~~elPe~~G~iRtv~e~~~d-i~vGTtrN~iL~Gt~~~~f~~-~v~gh~delwgla~hps~~q~~T~gqdk~v~l  394 (626)
T KOG2106|consen  317 YRKLRETELPEQFGPIRTVAEGKGD-ILVGTTRNFILQGTLENGFTL-TVQGHGDELWGLATHPSKNQLLTCGQDKHVRL  394 (626)
T ss_pred             ccccccccCchhcCCeeEEecCCCc-EEEeeccceEEEeeecCCceE-EEEecccceeeEEcCCChhheeeccCcceEEE
Confidence            4444433  3344566666654444 888888888887777766543 44678889999999999999999999999999


Q ss_pred             EeCCCCeeeEeeccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCCCeEEEEeCC
Q psy12697        431 WSLDKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAA  510 (602)
Q Consensus       431 wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~~  510 (602)
                      |+  ..++..+..                                   -..+..++.|+|.| .+|.|...|...+.|.+
T Consensus       395 W~--~~k~~wt~~-----------------------------------~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e  436 (626)
T KOG2106|consen  395 WN--DHKLEWTKI-----------------------------------IEDPAECADFHPSG-VVAVGTATGRWFVLDTE  436 (626)
T ss_pred             cc--CCceeEEEE-----------------------------------ecCceeEeeccCcc-eEEEeeccceEEEEecc
Confidence            99  334433322                                   13455677777788 89999999999999999


Q ss_pred             CCceeeeecccCCCeeEeeecCCc-eEEEeeCCCcEEEeecCCCCceeeeecccccceEEEEecCCcEEEEEECCCCCeE
Q psy12697        511 SGQCEQQFSFHSAPALDVDWQSNT-SFASCSTDQHIHVCKLHSDKPVKSFEGHTTGQLVHSYKGTGGIFEVCWNSRGDKV  589 (602)
Q Consensus       511 ~~~~~~~~~~~~~~v~~~~~s~~~-~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l  589 (602)
                      +...+..-.. ..+++.+.|+|+| +||.|+.|+.|+||.+.......+.-+.        ..+ .+|+.|.||+|+++|
T Consensus       437 ~~~lv~~~~d-~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k--------~~g-s~ithLDwS~Ds~~~  506 (626)
T KOG2106|consen  437 TQDLVTIHTD-NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGK--------CSG-SPITHLDWSSDSQFL  506 (626)
T ss_pred             cceeEEEEec-CCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeee--------ecC-ceeEEeeecCCCceE
Confidence            9766665554 8899999999999 9999999999999998755333222111        112 789999999999999


Q ss_pred             EEeccCCeEEe
Q psy12697        590 GASASDGSVFK  600 (602)
Q Consensus       590 ~~~~~dg~v~i  600 (602)
                      .+-+.|-.+..
T Consensus       507 ~~~S~d~eiLy  517 (626)
T KOG2106|consen  507 VSNSGDYEILY  517 (626)
T ss_pred             EeccCceEEEE
Confidence            99888876543

>KOG1407|consensus

Probab=100.00  E-value=9.1e-33  Score=227.78  Aligned_cols=276  Identities=25%  Similarity=0.413  Sum_probs=230.4

Q ss_pred             eEeeCCCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEeeCC-CCCe
Q psy12697        216 TKLIGHESEVFICAWNPVKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNN-NGSF  294 (602)
Q Consensus       216 ~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~  294 (602)
                      +.+.+|.+.|.+++|+.+|..|++++.|+++++|+++........              ....|...|-.++|+| ....
T Consensus        14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~--------------~~~gh~~svdql~w~~~~~d~   79 (313)
T KOG1407|consen   14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKEL--------------VYRGHTDSVDQLCWDPKHPDL   79 (313)
T ss_pred             HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhh--------------cccCCCcchhhheeCCCCCcc
Confidence            556789999999999999999999999999999999876332111              1234567888899988 5678


Q ss_pred             EEEEeCCCeEEEEcCC-CcceeecccccCCeEEEEEccCCCEEEEEecCCcEEEEeCCCCceeEEeeeccCCeeeeecc-
Q psy12697        295 LATGSYDGYARIWTSD-GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQ-  372 (602)
Q Consensus       295 l~~~~~dg~i~i~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~-  372 (602)
                      +++++.|..|++||.+ ++........ +.=.-+.|+|+|+++++++.|..|.+.|.++.+.....+.... +..+.|. 
T Consensus        80 ~atas~dk~ir~wd~r~~k~~~~i~~~-~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e-~ne~~w~~  157 (313)
T KOG1407|consen   80 FATASGDKTIRIWDIRSGKCTARIETK-GENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKFE-VNEISWNN  157 (313)
T ss_pred             eEEecCCceEEEEEeccCcEEEEeecc-CcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhcccce-eeeeeecC
Confidence            9999999999999987 5555555433 3445688999999999999999999999999887776654433 4445554 


Q ss_pred             CCCeEEEeeCCCeEEEEEcCCCceeeEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeeeEeeccccccEEEE
Q psy12697        373 SNTSFASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHDLQAHNKEIYTI  452 (602)
Q Consensus       373 ~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~  452 (602)
                      ++..|+.....|.|.|.....-+++..+++|.....||.|+|+|++||+|+.|..+.+||+...-+++.+..        
T Consensus       158 ~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isR--------  229 (313)
T KOG1407|consen  158 SNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISR--------  229 (313)
T ss_pred             CCCEEEEecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeecc--------
Confidence            456677777779999999999999999999999999999999999999999999999999998777776654        


Q ss_pred             EECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeeecccCCCeeEeeecC
Q psy12697        453 KWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQS  532 (602)
Q Consensus       453 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~  532 (602)
                                                +.-+|..+.||.||++||++++|..|-|=++++|..+..+. +.++...++|+|
T Consensus       230 --------------------------ldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~-~~~~t~tVAWHP  282 (313)
T KOG1407|consen  230 --------------------------LDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIP-CEGPTFTVAWHP  282 (313)
T ss_pred             --------------------------ccCceEEEEeccCcceeeccCccceEEeEecccCCeEEEee-ccCCceeEEecC
Confidence                                      45567777788899999999999999999999999999988 789999999999


Q ss_pred             Cc-eEEEeeCC
Q psy12697        533 NT-SFASCSTD  542 (602)
Q Consensus       533 ~~-~l~~~~~d  542 (602)
                      .. +||.++.|
T Consensus       283 k~~LLAyA~dd  293 (313)
T KOG1407|consen  283 KRPLLAYACDD  293 (313)
T ss_pred             CCceeeEEecC
Confidence            99 88877665

>KOG0292|consensus

Probab=100.00  E-value=3e-33  Score=267.73  Aligned_cols=304  Identities=18%  Similarity=0.269  Sum_probs=257.9

Q ss_pred             CCceeEEeeCCCCCeEEEEeCCCeEEEEcCC-CcceeecccccCCeEEEEEccCCCEEEEEecCCcEEEEeCCCCceeEE
Q psy12697        280 NKDVTSLDWNNNGSFLATGSYDGYARIWTSD-GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQ  358 (602)
Q Consensus       280 ~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~  358 (602)
                      ...+..++|+|...+++++-..|.|++||.+ +.++..+..|.++|..++|+|.+..+++|+.|-.|++|+..+.+++.+
T Consensus         9 SsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclft   88 (1202)
T KOG0292|consen    9 SSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFT   88 (1202)
T ss_pred             cccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccceehhh
Confidence            4679999999999999999999999999987 778889999999999999999999999999999999999999999999


Q ss_pred             eeeccCCeeeeeccCCC-eEEEeeCCCeEEEEEcCCCceeeEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCe
Q psy12697        359 FSFHSAPALDVDWQSNT-SFASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDN  437 (602)
Q Consensus       359 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~  437 (602)
                      +.+|..-|..+.|++.- -+++++.|.+|+||+..+++++..+.||...|.|..|+|...+++++|-|.+||+||+...+
T Consensus        89 L~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLR  168 (1202)
T KOG0292|consen   89 LLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLR  168 (1202)
T ss_pred             hccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccceEEEEeecchh
Confidence            99999999999999884 58999999999999999999999999999999999999999999999999999999987533


Q ss_pred             eeEeeccccccEEEEEECCCCCCC-CCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCc--e
Q psy12697        438 CVHDLQAHNKEIYTIKWSPTGPET-SNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQ--C  514 (602)
Q Consensus       438 ~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~~~~~--~  514 (602)
                      ....-.+      ++.=...+... ..-....-.+.+..+.+|...|+-++|+|.-.++++|+.|+.|++|.+..-+  .
T Consensus       169 kk~~~pg------~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWE  242 (1202)
T KOG0292|consen  169 KKNKAPG------SLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWE  242 (1202)
T ss_pred             ccCCCCC------CchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEecccccee
Confidence            2211111      00000000000 0001111235667889999999999999999999999999999999986543  2


Q ss_pred             eeeecccCCCeeEeeecCCc-eEEEeeCCCcEEEeecCCCCceeeeecccccceEEEEecCCcEEEEEECCCCCeEEEec
Q psy12697        515 EQQFSFHSAPALDVDWQSNT-SFASCSTDQHIHVCKLHSDKPVKSFEGHTTGQLVHSYKGTGGIFEVCWNSRGDKVGASA  593 (602)
Q Consensus       515 ~~~~~~~~~~v~~~~~s~~~-~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~  593 (602)
                      +.+.++|.+.|.++-|+|.. .+++.+.|++|+|||+.....+.+++...           +..+.++-+|..+++|+|.
T Consensus       243 vDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrren-----------dRFW~laahP~lNLfAAgH  311 (1202)
T KOG0292|consen  243 VDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRREN-----------DRFWILAAHPELNLFAAGH  311 (1202)
T ss_pred             ehhhhcccCCcceEEecCccceeEecCCCccEEEEecccccceeeeeccC-----------CeEEEEEecCCcceeeeec
Confidence            46788999999999999977 99999999999999999888888876443           6789999999999999998


Q ss_pred             cCCeEEe
Q psy12697        594 SDGSVFK  600 (602)
Q Consensus       594 ~dg~v~i  600 (602)
                      +.|.+..
T Consensus       312 DsGm~VF  318 (1202)
T KOG0292|consen  312 DSGMIVF  318 (1202)
T ss_pred             CCceEEE
Confidence            8887654

>KOG0281|consensus

Probab=100.00  E-value=2.2e-34  Score=246.75  Aligned_cols=273  Identities=22%  Similarity=0.417  Sum_probs=230.5

Q ss_pred             CCceeEEeeCCCCCeEEEEeCCCeEEEEcCC-CcceeecccccCCeEEEEEccCCCEEEEEecCCcEEEEeCCCCceeEE
Q psy12697        280 NKDVTSLDWNNNGSFLATGSYDGYARIWTSD-GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQ  358 (602)
Q Consensus       280 ~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~  358 (602)
                      ...|.|+.+.  ...+++|..|++|++||.+ -.....+.+|.+.|.|+.|.  .+.+++|+.|.+|++||+++++++..
T Consensus       197 skgVYClQYD--D~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~tge~l~t  272 (499)
T KOG0281|consen  197 SKGVYCLQYD--DEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNTGEPLNT  272 (499)
T ss_pred             CCceEEEEec--chhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeecc--ceEEEecCCCceEEEEeccCCchhhH
Confidence            4678999885  4479999999999999987 45677889999999999986  45899999999999999999999999


Q ss_pred             eeeccCCeeeeeccCCCeEEEeeCCCeEEEEEcCCCc---eeeEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEeCCC
Q psy12697        359 FSFHSAPALDVDWQSNTSFASCSTDQHIHVCKLHSDK---PVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDK  435 (602)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~---~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~  435 (602)
                      +-.|...+..+.|+ ++.+++++.|.++.+||+....   ..+.+.||...|+.+.|+  .+++++++.|.+|++|++.+
T Consensus       273 lihHceaVLhlrf~-ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd--~kyIVsASgDRTikvW~~st  349 (499)
T KOG0281|consen  273 LIHHCEAVLHLRFS-NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWSTST  349 (499)
T ss_pred             HhhhcceeEEEEEe-CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc--cceEEEecCCceEEEEeccc
Confidence            99999999999886 6789999999999999998764   335678999999999996  45999999999999999999


Q ss_pred             CeeeEeeccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCcee
Q psy12697        436 DNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCE  515 (602)
Q Consensus       436 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~~~~~~~  515 (602)
                      .++++++.+|...|.|+.+                                    .|+++++|+.|.+|++||++.|.++
T Consensus       350 ~efvRtl~gHkRGIAClQY------------------------------------r~rlvVSGSSDntIRlwdi~~G~cL  393 (499)
T KOG0281|consen  350 CEFVRTLNGHKRGIACLQY------------------------------------RDRLVVSGSSDNTIRLWDIECGACL  393 (499)
T ss_pred             eeeehhhhcccccceehhc------------------------------------cCeEEEecCCCceEEEEeccccHHH
Confidence            9999999998888777665                                    6789999999999999999999999


Q ss_pred             eeecccCCCeeEeeecCCceEEEeeCCCcEEEeecCCCCceeeeecccccceE-EEEecCCcEEEEEECCCCCeEEEecc
Q psy12697        516 QQFSFHSAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEGHTTGQLV-HSYKGTGGIFEVCWNSRGDKVGASAS  594 (602)
Q Consensus       516 ~~~~~~~~~v~~~~~s~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~l~~spdg~~l~~~~~  594 (602)
                      +.+.+|..-|.++.|... .+++|+.||+|+|||+..+.......+   .-++ ....+.+.|..+.|.  ...+++++.
T Consensus       394 RvLeGHEeLvRciRFd~k-rIVSGaYDGkikvWdl~aaldpra~~~---~~Cl~~lv~hsgRVFrLQFD--~fqIvsssH  467 (499)
T KOG0281|consen  394 RVLEGHEELVRCIRFDNK-RIVSGAYDGKIKVWDLQAALDPRAPAS---TLCLRTLVEHSGRVFRLQFD--EFQIISSSH  467 (499)
T ss_pred             HHHhchHHhhhheeecCc-eeeeccccceEEEEecccccCCccccc---chHHHhhhhccceeEEEeec--ceEEEeccC
Confidence            999999999999999644 899999999999999987643322111   0011 112235789999985  667888888


Q ss_pred             CCeEEee
Q psy12697        595 DGSVFKN  601 (602)
Q Consensus       595 dg~v~i~  601 (602)
                      |.+|.|+
T Consensus       468 ddtILiW  474 (499)
T KOG0281|consen  468 DDTILIW  474 (499)
T ss_pred             CCeEEEE
Confidence            8887764

>KOG0643|consensus

Probab=100.00  E-value=4.2e-33  Score=230.47  Aligned_cols=278  Identities=17%  Similarity=0.336  Sum_probs=233.8

Q ss_pred             cCCCCceeEEeeCCCCCeEEEEeCCCeEEEEcC-CCcceeecccccCCeEEEEEccCCCEEEEEecCCcEEEEeCCCCce
Q psy12697        277 VPSNKDVTSLDWNNNGSFLATGSYDGYARIWTS-DGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQC  355 (602)
Q Consensus       277 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~  355 (602)
                      ..|..+++.+.++.+|.+|++++.|....+|-. +|+.+-++.+|.+.|+++..+-+.+++++|+.|.++++||+++|++
T Consensus         7 ~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~   86 (327)
T KOG0643|consen    7 QGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQ   86 (327)
T ss_pred             ccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcE
Confidence            357899999999999999999999999999975 8999999999999999999999999999999999999999999999


Q ss_pred             eEEeeeccCCeeeeeccCCCeEEEeeCC------CeEEEEEcC-------CCceeeEeccCCCCeEEEEECCCCCEEEEE
Q psy12697        356 EQQFSFHSAPALDVDWQSNTSFASCSTD------QHIHVCKLH-------SDKPVKSFEGHTNEVNAIKWDPQGLLLASC  422 (602)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~i~i~d~~-------~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~  422 (602)
                      +..+.. ..++..+.|+.++.++..+.|      +.|.++|++       ..+|...+..+.+.++.+-|.|-++.|++|
T Consensus        87 la~~k~-~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~G  165 (327)
T KOG0643|consen   87 LATWKT-NSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAG  165 (327)
T ss_pred             EEEeec-CCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEEEe
Confidence            988874 467889999998776666544      578999998       456788888899999999999999999999


Q ss_pred             ECCCeEEEEeCCCCeeeE-eeccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCC
Q psy12697        423 SDDMTLKIWSLDKDNCVH-DLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVD  501 (602)
Q Consensus       423 ~~dg~i~iwd~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d  501 (602)
                      .+||.|.+||++++..+. ..+.                                  |...|+.+.+++|..++++++.|
T Consensus       166 he~G~is~~da~~g~~~v~s~~~----------------------------------h~~~Ind~q~s~d~T~FiT~s~D  211 (327)
T KOG0643|consen  166 HEDGSISIYDARTGKELVDSDEE----------------------------------HSSKINDLQFSRDRTYFITGSKD  211 (327)
T ss_pred             cCCCcEEEEEcccCceeeechhh----------------------------------hccccccccccCCcceEEecccC
Confidence            999999999999975433 2232                                  56677888888899999999999


Q ss_pred             CeEEEEeCCCCceeeeecccCCCeeEeeecCCc-eEEEeeCCCc--------------EEEeecCCCCceeeeecccccc
Q psy12697        502 KTTIIWDAASGQCEQQFSFHSAPALDVDWQSNT-SFASCSTDQH--------------IHVCKLHSDKPVKSFEGHTTGQ  566 (602)
Q Consensus       502 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~-~l~~~~~d~~--------------i~iw~~~~~~~~~~~~~~~~~~  566 (602)
                      .+-++||..+-+++.++. -..||++.+++|-. .++.|+....              -++|++-..+.+...++|-   
T Consensus       212 ttakl~D~~tl~v~Kty~-te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHF---  287 (327)
T KOG0643|consen  212 TTAKLVDVRTLEVLKTYT-TERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHF---  287 (327)
T ss_pred             ccceeeeccceeeEEEee-ecccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccc---
Confidence            999999999999999988 56899999999977 5555443221              1223322233444455554   


Q ss_pred             eEEEEecCCcEEEEEECCCCCeEEEeccCCeEEee
Q psy12697        567 LVHSYKGTGGIFEVCWNSRGDKVGASASDGSVFKN  601 (602)
Q Consensus       567 ~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~v~i~  601 (602)
                              ++|++++|+|||+..++|++||.|+|.
T Consensus       288 --------GPINsvAfhPdGksYsSGGEDG~VR~h  314 (327)
T KOG0643|consen  288 --------GPINSVAFHPDGKSYSSGGEDGYVRLH  314 (327)
T ss_pred             --------cCcceeEECCCCcccccCCCCceEEEE
Confidence                    899999999999999999999999984

>KOG0283|consensus

Probab=100.00  E-value=6.4e-33  Score=266.00  Aligned_cols=288  Identities=18%  Similarity=0.335  Sum_probs=222.7

Q ss_pred             eeeeeee-ccCCceEEEEECCCCCeEEEeeCCceEEEEecCCceeEEEeeccCceEEEEeCCCCCC--------------
Q psy12697        131 ECLNTLT-RHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKGTGGIFEVCWNSRGTP--------------  195 (602)
Q Consensus       131 ~~~~~l~-~h~~~V~~~~~s~d~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------  195 (602)
                      ...+.+. .|.+.|+++.||+||+|||+||.|+.|+||.+...+....-..............+..              
T Consensus       257 ~~~Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~  336 (712)
T KOG0283|consen  257 TVVQEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRT  336 (712)
T ss_pred             EEeeccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccc
Confidence            3445666 8999999999999999999999999999999876443211111100000001111100              


Q ss_pred             CCCCC------CccccccccccCCcceEeeCCCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCccceEEEEEE
Q psy12697        196 PNPPE------SMEVDASIEIPQSKATKLIGHESEVFICAWNPVKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHC  269 (602)
Q Consensus       196 ~~~~~------~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~  269 (602)
                      .....      ..-......+...+...+.||.+.|..++|+. +.+|++++.|.+||+|++....+...          
T Consensus       337 s~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSK-n~fLLSSSMDKTVRLWh~~~~~CL~~----------  405 (712)
T KOG0283|consen  337 SSSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSK-NNFLLSSSMDKTVRLWHPGRKECLKV----------  405 (712)
T ss_pred             cccccccCCccccCCCccccccccchhhhhccchhheeccccc-CCeeEeccccccEEeecCCCcceeeE----------
Confidence            00000      01111223345667788999999999999996 56899999999999999987776421          


Q ss_pred             ecCCCcccCCCCceeEEeeCC-CCCeEEEEeCCCeEEEEcCCCcceeecccccCCeEEEEEccCCCEEEEEecCCcEEEE
Q psy12697        270 ISKGGTEVPSNKDVTSLDWNN-NGSFLATGSYDGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIW  348 (602)
Q Consensus       270 ~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~w  348 (602)
                             ..|..-|+|++|+| |.++|++|+-||.++||++....+.....-..-|++++|.|+|++.+.|+.+|.+++|
T Consensus       406 -------F~HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY  478 (712)
T KOG0283|consen  406 -------FSHNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFY  478 (712)
T ss_pred             -------EecCCeeEEEEecccCCCcEeecccccceEEeecCcCeeEeehhhhhhheeEEeccCCceEEEEEeccEEEEE
Confidence                   23578999999999 8899999999999999999988888777777899999999999999999999999999


Q ss_pred             eCCCCceeEEeeec--------cCCeeeeeccCCC--eEEEeeCCCeEEEEEcCCCceeeEeccCCCC--eEEEEECCCC
Q psy12697        349 DAASGQCEQQFSFH--------SAPALDVDWQSNT--SFASCSTDQHIHVCKLHSDKPVKSFEGHTNE--VNAIKWDPQG  416 (602)
Q Consensus       349 d~~~~~~~~~~~~~--------~~~~~~~~~~~~~--~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~--i~~~~~~~~~  416 (602)
                      ++...+.......+        ...|+.+.+.|..  .+++.+.|..|+|+|.++.+++.+++++.+.  -....|+.||
T Consensus       479 ~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dg  558 (712)
T KOG0283|consen  479 DTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDG  558 (712)
T ss_pred             EccCCeEEEeeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCC
Confidence            99988777655432        2368999888764  4999999999999999999999999986543  3467899999


Q ss_pred             CEEEEEECCCeEEEEeCCCC
Q psy12697        417 LLLASCSDDMTLKIWSLDKD  436 (602)
Q Consensus       417 ~~l~~~~~dg~i~iwd~~~~  436 (602)
                      ++|+++++|..|++|++...
T Consensus       559 k~IVs~seDs~VYiW~~~~~  578 (712)
T KOG0283|consen  559 KHIVSASEDSWVYIWKNDSF  578 (712)
T ss_pred             CEEEEeecCceEEEEeCCCC
Confidence            99999999999999998543

>KOG0288|consensus

Probab=100.00  E-value=8.1e-33  Score=242.63  Aligned_cols=294  Identities=21%  Similarity=0.344  Sum_probs=247.5

Q ss_pred             cccCCcceEeeCCCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEee
Q psy12697        209 EIPQSKATKLIGHESEVFICAWNPVKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDW  288 (602)
Q Consensus       209 ~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  288 (602)
                      .+|......+..|.+.+..+.|-++...|++|+.|..|++|++...+....              +......+.|++++|
T Consensus       162 ~lpS~~~~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~--------------~tLaGs~g~it~~d~  227 (459)
T KOG0288|consen  162 TLPSRALFVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELI--------------STLAGSLGNITSIDF  227 (459)
T ss_pred             ccchhhhhhhhccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhh--------------hhhhccCCCcceeee
Confidence            345555677888999999999999999999999999999999876652211              112233578999999


Q ss_pred             CCCCCeEEEEeCCCeEEEEcCC-CcceeecccccCCeEEEEEccCCCEEEEEecCCcEEEEeCCCCceeEEeeeccCCee
Q psy12697        289 NNNGSFLATGSYDGYARIWTSD-GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPAL  367 (602)
Q Consensus       289 ~~~~~~l~~~~~dg~i~i~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~  367 (602)
                      .++++.+++++.|+.+++|+++ .....++.+|.+.|+++.|......+++++.|.++++||+....|.+++-.. ..+.
T Consensus       228 d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~~-S~cn  306 (459)
T KOG0288|consen  228 DSDNKHVIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLPG-SQCN  306 (459)
T ss_pred             cCCCceEEeecCCCceeeeeccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheecccccc-cccc
Confidence            9999999999999999999987 6778899999999999999987777999999999999999998887765432 2233


Q ss_pred             eeeccCCCeEEEeeCCCeEEEEEcCCCceeeEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeeeEeeccccc
Q psy12697        368 DVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHDLQAHNK  447 (602)
Q Consensus       368 ~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~  447 (602)
                      ++... ...+++|..|+.|++||.++..+......+. .|+++..++++..|.+++.|.++.+.|+++.+....+.....
T Consensus       307 DI~~~-~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~  384 (459)
T KOG0288|consen  307 DIVCS-ISDVISGHFDKKVRFWDIRSADKTRSVPLGG-RVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGF  384 (459)
T ss_pred             ceEec-ceeeeecccccceEEEeccCCceeeEeecCc-ceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeecccc
Confidence            33333 5568889999999999999999999988776 899999999999999999999999999999887777654322


Q ss_pred             cEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeeecccCCC--e
Q psy12697        448 EIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAP--A  525 (602)
Q Consensus       448 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~--v  525 (602)
                      .                              -....+.+.|||++.|+++|+.||.|+||++.++++...+......  |
T Consensus       385 k------------------------------~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI  434 (459)
T KOG0288|consen  385 K------------------------------CASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAI  434 (459)
T ss_pred             c------------------------------cccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcce
Confidence            1                              1223678999999999999999999999999999999888765554  9


Q ss_pred             eEeeecCCc-eEEEeeCCCcEEEee
Q psy12697        526 LDVDWQSNT-SFASCSTDQHIHVCK  549 (602)
Q Consensus       526 ~~~~~s~~~-~l~~~~~d~~i~iw~  549 (602)
                      +++.|+|.| .+++++.++.+.+|.
T Consensus       435 ~s~~W~~sG~~Llsadk~~~v~lW~  459 (459)
T KOG0288|consen  435 TSLSWNPSGSGLLSADKQKAVTLWT  459 (459)
T ss_pred             EEEEEcCCCchhhcccCCcceEecC
Confidence            999999999 999999999999993

>KOG1407|consensus

Probab=100.00  E-value=4.4e-31  Score=217.88  Aligned_cols=272  Identities=22%  Similarity=0.365  Sum_probs=231.2

Q ss_pred             CCCCceeEEeeCCCCCeEEEEeCCCeEEEEcCCCcc---eeecccccCCeEEEEEcc-CCCEEEEEecCCcEEEEeCCCC
Q psy12697        278 PSNKDVTSLDWNNNGSFLATGSYDGYARIWTSDGSL---KSTLGQHKGPIFALKWNK-RGNYILSAGVDKTTIIWDAASG  353 (602)
Q Consensus       278 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~---~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~~wd~~~~  353 (602)
                      .|...+.+++|+.+|..+++|+.|+.+.+|+++...   .....+|.+.|..++|+| ..+.+++++.|.+|++||++.+
T Consensus        18 ~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~   97 (313)
T KOG1407|consen   18 GHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSG   97 (313)
T ss_pred             hhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccC
Confidence            356789999999999999999999999999987432   224567898999999987 4568899999999999999999


Q ss_pred             ceeEEeeeccCCeeeeeccCCCeEEEeeCCCeEEEEEcCCCceeeEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEeC
Q psy12697        354 QCEQQFSFHSAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSL  433 (602)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~  433 (602)
                      ++..........+...-+.+++.++++..|..|.+.|.++.+.....+ ....+..++|+.++.+++.....|.|.|...
T Consensus        98 k~~~~i~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~-~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsy  176 (313)
T KOG1407|consen   98 KCTARIETKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQ-FKFEVNEISWNNSNDLFFLTNGLGCVEILSY  176 (313)
T ss_pred             cEEEEeeccCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhc-ccceeeeeeecCCCCEEEEecCCceEEEEec
Confidence            999998877777766555566789999999999999999988766554 4456788899988888888888899999999


Q ss_pred             CCCeeeEeeccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCc
Q psy12697        434 DKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQ  513 (602)
Q Consensus       434 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~~~~~  513 (602)
                      ...+++.+++.|....                                  .||.|+|+|+|||+|+.|..+.+||++.--
T Consensus       177 psLkpv~si~AH~snC----------------------------------icI~f~p~GryfA~GsADAlvSLWD~~ELi  222 (313)
T KOG1407|consen  177 PSLKPVQSIKAHPSNC----------------------------------ICIEFDPDGRYFATGSADALVSLWDVDELI  222 (313)
T ss_pred             cccccccccccCCcce----------------------------------EEEEECCCCceEeeccccceeeccChhHhh
Confidence            9888888887765544                                  455666688999999999999999999999


Q ss_pred             eeeeecccCCCeeEeeecCCc-eEEEeeCCCcEEEeecCCCCceeeeecccccceEEEEecCCcEEEEEECCCCCeEEEe
Q psy12697        514 CEQQFSFHSAPALDVDWQSNT-SFASCSTDQHIHVCKLHSDKPVKSFEGHTTGQLVHSYKGTGGIFEVCWNSRGDKVGAS  592 (602)
Q Consensus       514 ~~~~~~~~~~~v~~~~~s~~~-~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~  592 (602)
                      |++.+..+.-+|..+.||.|| +||+++.|..|-|=++++|..+            +.++..++-..++|+|...+||.+
T Consensus       223 C~R~isRldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~------------~eI~~~~~t~tVAWHPk~~LLAyA  290 (313)
T KOG1407|consen  223 CERCISRLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRV------------WEIPCEGPTFTVAWHPKRPLLAYA  290 (313)
T ss_pred             hheeeccccCceEEEEeccCcceeeccCccceEEeEecccCCeE------------EEeeccCCceeEEecCCCceeeEE
Confidence            999999999999999999999 9999999999999996655544            445556889999999999999999


Q ss_pred             ccCC
Q psy12697        593 ASDG  596 (602)
Q Consensus       593 ~~dg  596 (602)
                      ++|.
T Consensus       291 ~ddk  294 (313)
T KOG1407|consen  291 CDDK  294 (313)
T ss_pred             ecCC
Confidence            8864

>KOG0277|consensus

Probab=100.00  E-value=8.1e-32  Score=221.27  Aligned_cols=278  Identities=22%  Similarity=0.382  Sum_probs=224.2

Q ss_pred             eEEEEEcCC-CCEEEEee-------CCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEeeCCC-CCeE
Q psy12697        225 VFICAWNPV-KDFLASGS-------GDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNN-GSFL  295 (602)
Q Consensus       225 v~~~~~~~~-~~~l~s~~-------~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l  295 (602)
                      =+++.|+|- .++|+.+.       ..|.+.|.++......     .....         ......+..++|+++ .+.+
T Consensus        11 GysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi-----~e~~s---------~d~~D~LfdV~Wse~~e~~~   76 (311)
T KOG0277|consen   11 GYSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGI-----QECQS---------YDTEDGLFDVAWSENHENQV   76 (311)
T ss_pred             cceeEecccccchhheeehhhcccccCceEEEEecCCCCCe-----EEEEe---------eecccceeEeeecCCCcceE
Confidence            356889983 24444332       3688999988643322     11111         112467899999995 5678


Q ss_pred             EEEeCCCeEEEEcCC--CcceeecccccCCeEEEEEcc-CCCEEEEEecCCcEEEEeCCCCceeEEeeeccCCeeeeecc
Q psy12697        296 ATGSYDGYARIWTSD--GSLKSTLGQHKGPIFALKWNK-RGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQ  372 (602)
Q Consensus       296 ~~~~~dg~i~i~~~~--~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~  372 (602)
                      ++++.||.+++||..  ...+..++.|..+|.++.|++ +++.+++++.|++|++|+...+..++++.+|...|....|+
T Consensus        77 ~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~s  156 (311)
T KOG0277|consen   77 IAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFS  156 (311)
T ss_pred             EEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecC
Confidence            899999999999965  467778899999999999998 45567888999999999999999999999999999999999


Q ss_pred             CC--CeEEEeeCCCeEEEEEcCCCceeeEeccCCCCeEEEEECC-CCCEEEEEECCCeEEEEeCCCC-eeeEeecccccc
Q psy12697        373 SN--TSFASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDP-QGLLLASCSDDMTLKIWSLDKD-NCVHDLQAHNKE  448 (602)
Q Consensus       373 ~~--~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~  448 (602)
                      |.  +.|++++.|+.+++||++.......+..|..+|.++.|+. +...|+||+.|+.|++||+++. .++..+.+|.-.
T Consensus       157 p~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~A  236 (311)
T KOG0277|consen  157 PHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLA  236 (311)
T ss_pred             CCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhccccceeecCCceE
Confidence            96  7899999999999999987655555999999999999998 6788999999999999999875 345556666655


Q ss_pred             EEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCC-ceeeeecccCCCeeE
Q psy12697        449 IYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASG-QCEQQFSFHSAPALD  527 (602)
Q Consensus       449 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~  527 (602)
                      |+.+.|+|.                                 ....|++++.|-+++|||...+ .++.+...|+.-+..
T Consensus       237 VRkvk~Sph---------------------------------~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g  283 (311)
T KOG0277|consen  237 VRKVKFSPH---------------------------------HASLLASASYDMTVRIWDPERQDSAIETVDHHTEFVCG  283 (311)
T ss_pred             EEEEecCcc---------------------------------hhhHhhhccccceEEecccccchhhhhhhhccceEEec
Confidence            655555553                                 2367999999999999999855 456777788899999


Q ss_pred             eeecCCc--eEEEeeCCCcEEEee
Q psy12697        528 VDWQSNT--SFASCSTDQHIHVCK  549 (602)
Q Consensus       528 ~~~s~~~--~l~~~~~d~~i~iw~  549 (602)
                      +.||+-.  ++|+++.|+.++||+
T Consensus       284 ~Dws~~~~~~vAs~gWDe~l~Vw~  307 (311)
T KOG0277|consen  284 LDWSLFDPGQVASTGWDELLYVWN  307 (311)
T ss_pred             cccccccCceeeecccccceeeec
Confidence            9999865  999999999999998

>KOG0310|consensus

Probab=100.00  E-value=3e-31  Score=238.10  Aligned_cols=274  Identities=20%  Similarity=0.289  Sum_probs=228.5

Q ss_pred             CCceeEEeeCCCCCeEEEEeCCCeEEEEcCCCc-ceeecccccCCeEEEEEccCCCEEEEEecCCcEEEEeCCCCceeEE
Q psy12697        280 NKDVTSLDWNNNGSFLATGSYDGYARIWTSDGS-LKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQ  358 (602)
Q Consensus       280 ~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~  358 (602)
                      ...|++++|+|...+=++.+..-.+.+|+.... ..+.+......+.++.|..||+.|++|+..|.|+++|+.+...++.
T Consensus        26 ~~~vssl~fsp~~P~d~aVt~S~rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~  105 (487)
T KOG0310|consen   26 HNSVSSLCFSPKHPYDFAVTSSVRVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVILRQ  105 (487)
T ss_pred             cCcceeEecCCCCCCceEEecccEEEEEecchhhhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEeccccHHHHHH
Confidence            478999999996654333334466889987654 3445777888999999999999999999999999999888778889


Q ss_pred             eeeccCCeeeeeccCC--CeEEEeeCCCeEEEEEcCCCceeeEeccCCCCeEEEEECC-CCCEEEEEECCCeEEEEeCCC
Q psy12697        359 FSFHSAPALDVDWQSN--TSFASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDP-QGLLLASCSDDMTLKIWSLDK  435 (602)
Q Consensus       359 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~iwd~~~  435 (602)
                      +..|..++....|+|.  ..+++|+.|+.+++||+.+......+.+|.+.|.|.+|+| ++.++++||.||.|++||++.
T Consensus       106 ~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~  185 (487)
T KOG0310|consen  106 LYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRS  185 (487)
T ss_pred             HhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEecc
Confidence            9999999999999885  5588899999999999999987778999999999999999 456899999999999999987


Q ss_pred             C-eeeEeeccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCce
Q psy12697        436 D-NCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQC  514 (602)
Q Consensus       436 ~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~~~~~~  514 (602)
                      . ..+.++.                                   |..+|..+.+-|.|..+++++. ..|+|||+.+|..
T Consensus       186 ~~~~v~eln-----------------------------------hg~pVe~vl~lpsgs~iasAgG-n~vkVWDl~~G~q  229 (487)
T KOG0310|consen  186 LTSRVVELN-----------------------------------HGCPVESVLALPSGSLIASAGG-NSVKVWDLTTGGQ  229 (487)
T ss_pred             CCceeEEec-----------------------------------CCCceeeEEEcCCCCEEEEcCC-CeEEEEEecCCce
Confidence            6 3343332                                   6677777888888889999875 4599999996654


Q ss_pred             -eeeecccCCCeeEeeecCCc-eEEEeeCCCcEEEeecCCCCceeeeecccccceEEEEecCCcEEEEEECCCCCeEEEe
Q psy12697        515 -EQQFSFHSAPALDVDWQSNT-SFASCSTDQHIHVCKLHSDKPVKSFEGHTTGQLVHSYKGTGGIFEVCWNSRGDKVGAS  592 (602)
Q Consensus       515 -~~~~~~~~~~v~~~~~s~~~-~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~  592 (602)
                       +..+..|...|+|+++..++ .|++++-|+.|++||+.+.+.+            ..+...++|.+++.+||++.+++|
T Consensus       230 ll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv------------~s~~~~~pvLsiavs~dd~t~viG  297 (487)
T KOG0310|consen  230 LLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVV------------HSWKYPGPVLSIAVSPDDQTVVIG  297 (487)
T ss_pred             ehhhhhcccceEEEEEeecCCceEeecccccceEEEEccceEEE------------EeeecccceeeEEecCCCceEEEe
Confidence             45555599999999999999 9999999999999996554444            445556899999999999999999


Q ss_pred             ccCCeEEee
Q psy12697        593 ASDGSVFKN  601 (602)
Q Consensus       593 ~~dg~v~i~  601 (602)
                      ..||.+.+.
T Consensus       298 msnGlv~~r  306 (487)
T KOG0310|consen  298 MSNGLVSIR  306 (487)
T ss_pred             cccceeeee
Confidence            999988764

>KOG2048|consensus

Probab=100.00  E-value=2.3e-29  Score=234.90  Aligned_cols=393  Identities=18%  Similarity=0.215  Sum_probs=286.3

Q ss_pred             cCCceEEEEECCCCCeEEEeeCCceEEEEecCCceeEEEeeccCceEEEEeCCCCCCCCCCCCccccccccccCCcceEe
Q psy12697        139 HTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKGTGGIFEVCWNSRGTPPNPPESMEVDASIEIPQSKATKL  218 (602)
Q Consensus       139 h~~~V~~~~~s~d~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  218 (602)
                      -..+|++|||+.+.+.||.+-.||.|.||++..+-...                                       ..+
T Consensus        24 ~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~---------------------------------------~vi   64 (691)
T KOG2048|consen   24 KPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLE---------------------------------------PVI   64 (691)
T ss_pred             eccceEEEEEeccCCceeeeccCCcEEEEccCCCceee---------------------------------------EEE
Confidence            35689999999999999999999999999998754332                                       222


Q ss_pred             eC-CCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEeeCCCCCeEEE
Q psy12697        219 IG-HESEVFICAWNPVKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFLAT  297 (602)
Q Consensus       219 ~~-h~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~  297 (602)
                      .+ ....|.+++|. ++..|++.+.+|.|.-||+.+.+......                ...+.|.+++.+|.+..+++
T Consensus        65 ~g~~drsIE~L~W~-e~~RLFS~g~sg~i~EwDl~~lk~~~~~d----------------~~gg~IWsiai~p~~~~l~I  127 (691)
T KOG2048|consen   65 HGPEDRSIESLAWA-EGGRLFSSGLSGSITEWDLHTLKQKYNID----------------SNGGAIWSIAINPENTILAI  127 (691)
T ss_pred             ecCCCCceeeEEEc-cCCeEEeecCCceEEEEecccCceeEEec----------------CCCcceeEEEeCCccceEEe
Confidence            33 35679999999 56678899999999999999876543221                23688999999999999999


Q ss_pred             EeCCCeEEEEcCCCcce---eecccccCCeEEEEEccCCCEEEEEecCCcEEEEeCCCCceeEEee-----e---ccCCe
Q psy12697        298 GSYDGYARIWTSDGSLK---STLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFS-----F---HSAPA  366 (602)
Q Consensus       298 ~~~dg~i~i~~~~~~~~---~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~-----~---~~~~~  366 (602)
                      |+.||.+..++.....+   ..+...++.|.++.|+|++..+++|+.||.|++||...+..+....     .   ...-+
T Consensus       128 gcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iV  207 (691)
T KOG2048|consen  128 GCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIV  207 (691)
T ss_pred             ecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEE
Confidence            99999777777654332   3344567899999999999999999999999999999988776221     1   22346


Q ss_pred             eeeeccCCCeEEEeeCCCeEEEEEcCCCceeeEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCee----eEee
Q psy12697        367 LDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNC----VHDL  442 (602)
Q Consensus       367 ~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~----~~~~  442 (602)
                      .++.+..++.+++|...|.|.+||...+..+..+..|...|.+++..+++.++++++.|+.|..|...+...    ....
T Consensus       208 WSv~~Lrd~tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r  287 (691)
T KOG2048|consen  208 WSVLFLRDSTIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRR  287 (691)
T ss_pred             EEEEEeecCcEEEecCCceEEEEcccCcchhhhhhhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCccceeeeccc
Confidence            778888899999999999999999999999999999999999999999999999999999999888766532    2233


Q ss_pred             ccccccEEEEEECCCCCCCC--------------------------------CCCcceeeeee-----------e-----
Q psy12697        443 QAHNKEIYTIKWSPTGPETS--------------------------------NPNMSLIFILK-----------S-----  474 (602)
Q Consensus       443 ~~~~~~i~~~~~~~~~~~~~--------------------------------~~~~~~~~~~~-----------~-----  474 (602)
                      ..|...+.+++..++.-...                                .........+.           .     
T Consensus       288 ~~h~hdvrs~av~~~~l~sgG~d~~l~i~~s~~~~~~~h~~~~~~p~~~~v~~a~~~~L~~~w~~h~v~lwrlGS~~~~g  367 (691)
T KOG2048|consen  288 DLHAHDVRSMAVIENALISGGRDFTLAICSSREFKNMDHRQKNLFPASDRVSVAPENRLLVLWKAHGVDLWRLGSVILQG  367 (691)
T ss_pred             cCCcccceeeeeecceEEecceeeEEEEccccccCchhhhccccccccceeecCccceEEEEeccccccceeccCccccc
Confidence            45666777776654410000                                00000000000           0     


Q ss_pred             ---------ccCCccCCeEEEEEccCCCEEEEEeCCCeEEEEeCCC----------------------------------
Q psy12697        475 ---------TLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAAS----------------------------------  511 (602)
Q Consensus       475 ---------~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~~~----------------------------------  511 (602)
                               ........|.+.+.||+|++++.+.-. .++||.+..                                  
T Consensus       368 ~~~~~~Llkl~~k~~~nIs~~aiSPdg~~Ia~st~~-~~~iy~L~~~~~vk~~~v~~~~~~~~~a~~i~ftid~~k~~~~  446 (691)
T KOG2048|consen  368 EYNYIHLLKLFTKEKENISCAAISPDGNLIAISTVS-RTKIYRLQPDPNVKVINVDDVPLALLDASAISFTIDKNKLFLV  446 (691)
T ss_pred             ccChhhheeeecCCccceeeeccCCCCCEEEEeecc-ceEEEEeccCcceeEEEeccchhhhccceeeEEEecCceEEEE
Confidence                     011234568899999999999987621 122332211                                  


Q ss_pred             --------------C--ceeeeec--ccCCCeeEeeecCCc-eEEEeeCCCcEEEeecCCCCceeeeecccccceEEEEe
Q psy12697        512 --------------G--QCEQQFS--FHSAPALDVDWQSNT-SFASCSTDQHIHVCKLHSDKPVKSFEGHTTGQLVHSYK  572 (602)
Q Consensus       512 --------------~--~~~~~~~--~~~~~v~~~~~s~~~-~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~  572 (602)
                                    .  +.+..+.  ....+|..+..||+| +||+.+.+|.|.+|++++.+........          
T Consensus       447 s~~~~~le~~el~~ps~kel~~~~~~~~~~~I~~l~~SsdG~yiaa~~t~g~I~v~nl~~~~~~~l~~rl----------  516 (691)
T KOG2048|consen  447 SKNIFSLEEFELETPSFKELKSIQSQAKCPSISRLVVSSDGNYIAAISTRGQIFVYNLETLESHLLKVRL----------  516 (691)
T ss_pred             ecccceeEEEEecCcchhhhhccccccCCCcceeEEEcCCCCEEEEEeccceEEEEEcccceeecchhcc----------
Confidence                          1  0000000  134468899999999 9999999999999999876533222111          


Q ss_pred             cCCcEEEEEECC-CCCeEEEeccCCeEE
Q psy12697        573 GTGGIFEVCWNS-RGDKVGASASDGSVF  599 (602)
Q Consensus       573 ~~~~i~~l~~sp-dg~~l~~~~~dg~v~  599 (602)
                       ...++.++|+| +.+.|+++..|+.+.
T Consensus       517 -n~~vTa~~~~~~~~~~lvvats~nQv~  543 (691)
T KOG2048|consen  517 -NIDVTAAAFSPFVRNRLVVATSNNQVF  543 (691)
T ss_pred             -CcceeeeeccccccCcEEEEecCCeEE
Confidence             25689999995 557788888888664

>KOG0274|consensus

Probab=100.00  E-value=8.4e-31  Score=255.50  Aligned_cols=288  Identities=28%  Similarity=0.470  Sum_probs=237.4

Q ss_pred             eeeeec-cCCceEEEEECCCCCeEEEeeCCceEEEEecCCceeEEEeeccCceEEEEeCCCCCCCCCCCCcccccccccc
Q psy12697        133 LNTLTR-HTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKGTGGIFEVCWNSRGTPPNPPESMEVDASIEIP  211 (602)
Q Consensus       133 ~~~l~~-h~~~V~~~~~s~d~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (602)
                      ...+.+ |...+.+..|.  ..++++++.|++|++||..++..+.                                   
T Consensus       200 ~~~~~~~~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~-----------------------------------  242 (537)
T KOG0274|consen  200 YKVLLGTDDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLIL-----------------------------------  242 (537)
T ss_pred             ceeecccCcchhhhheee--cCeEEecCCCceeEEeecccceEEE-----------------------------------
Confidence            344554 67788999998  7789999999999999999998874                                   


Q ss_pred             CCcceEeeCCCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEeeCCC
Q psy12697        212 QSKATKLIGHESEVFICAWNPVKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNN  291 (602)
Q Consensus       212 ~~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  291 (602)
                          ..+.||.+.|+++++..-+++|++|+.|.++++||..++.+                                   
T Consensus       243 ----~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C-----------------------------------  283 (537)
T KOG0274|consen  243 ----TRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGEC-----------------------------------  283 (537)
T ss_pred             ----eeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcE-----------------------------------
Confidence                33778999999999998788999999999999999876653                                   


Q ss_pred             CCeEEEEeCCCeEEEEcCCCcceeecccccCCeEEEEEccCCCEEEEEecCCcEEEEeCCCCceeEEeeeccCCeeeeec
Q psy12697        292 GSFLATGSYDGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDW  371 (602)
Q Consensus       292 ~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~  371 (602)
                                            ...+.+|...|.++...  ...+++|+.|.+|++|+++++.++..+.+|..+|.++..
T Consensus       284 ----------------------~~~l~gh~stv~~~~~~--~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~  339 (537)
T KOG0274|consen  284 ----------------------THSLQGHTSSVRCLTID--PFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQL  339 (537)
T ss_pred             ----------------------EEEecCCCceEEEEEcc--CceEeeccCCceEEEEeccCcceEEEeccccccEEEEEe
Confidence                                  22334566666666554  335666777777788877777777777777777777777


Q ss_pred             cCCCeEEEeeCCCeEEEEEcCCCceeeEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCC-eeeEeeccccccEE
Q psy12697        372 QSNTSFASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKD-NCVHDLQAHNKEIY  450 (602)
Q Consensus       372 ~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~i~  450 (602)
                      . +..+++|+.|+.|.+||+.+++++..+.+|...|.++.+.+. ..+++|+.|+.|++||+++. +++.++..|..-+.
T Consensus       340 ~-~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~  417 (537)
T KOG0274|consen  340 D-EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVS  417 (537)
T ss_pred             c-CCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhcCCccccc
Confidence            6 667777777888888888888888999999999999988876 79999999999999999999 89999888877665


Q ss_pred             EEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeeecc-cCCCeeEee
Q psy12697        451 TIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSF-HSAPALDVD  529 (602)
Q Consensus       451 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~~v~~~~  529 (602)
                      .+.+                                    .+++|++++.|++|++||..++++++.+.+ |...|..++
T Consensus       418 ~l~~------------------------------------~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~  461 (537)
T KOG0274|consen  418 SLLL------------------------------------RDNFLVSSSADGTIKLWDAEEGECLRTLEGRHVGGVSALA  461 (537)
T ss_pred             cccc------------------------------------ccceeEeccccccEEEeecccCceeeeeccCCcccEEEee
Confidence            4443                                    457899999999999999999999999998 678899998


Q ss_pred             ecCCceEEEeeCCCcEEEeecCCCCceeee
Q psy12697        530 WQSNTSFASCSTDQHIHVCKLHSDKPVKSF  559 (602)
Q Consensus       530 ~s~~~~l~~~~~d~~i~iw~~~~~~~~~~~  559 (602)
                      +. +..+++++.|+.+++||++++++...+
T Consensus       462 ~~-~~~il~s~~~~~~~l~dl~~~~~~~~l  490 (537)
T KOG0274|consen  462 LG-KEEILCSSDDGSVKLWDLRSGTLIRTL  490 (537)
T ss_pred             cC-cceEEEEecCCeeEEEecccCchhhhh
Confidence            87 338999999999999999999887766

>KOG2106|consensus

Probab=100.00  E-value=5.5e-29  Score=224.11  Aligned_cols=425  Identities=16%  Similarity=0.259  Sum_probs=312.7

Q ss_pred             cCCcceeccceeeeecccceeeeeeeccCCceEEEEECCCCCeEEEeeCCceEEEEecCCceeEEEee---c--cCceEE
Q psy12697        112 TNGEEVHRLTLPLWDVERGECLNTLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYK---G--TGGIFE  186 (602)
Q Consensus       112 ~~~~~~~~~~i~vwd~~~~~~~~~l~~h~~~V~~~~~s~d~~~l~s~~~d~~v~iwd~~~~~~~~~~~---~--~~~~~~  186 (602)
                      ..-....+.-+.|||++.+......+.-+..|..+.|+|.+.-|+.....+.+..|+++.+.+.+...   .  ..-+.+
T Consensus       172 ~~vD~s~~h~lSVWdWqk~~~~~~vk~sne~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~  251 (626)
T KOG2106|consen  172 CAVDDSNPHMLSVWDWQKKAKLGPVKTSNEVVFLATFHPTDPNLIITCGKGHLYFWTLRGGSLVKRQGIFEKREKKFVLC  251 (626)
T ss_pred             EEecCCCccccchhhchhhhccCcceeccceEEEEEeccCCCcEEEEeCCceEEEEEccCCceEEEeeccccccceEEEE
Confidence            33344456678899999999999999999999999999966555555556889999999987665432   2  244789


Q ss_pred             EEeCCCCCCCCCCCCccccccccccCCcceEeeCCCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCccceEEE
Q psy12697        187 VCWNSRGTPPNPPESMEVDASIEIPQSKATKLIGHESEVFICAWNPVKDFLASGSGDSTARIWDMTDSTKKDPKELQIVL  266 (602)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~  266 (602)
                      ++|.++|..+...........-.-..........|.+.|.+++...+|.+|- |+.|..|..|| ..-+.....+++.  
T Consensus       252 v~F~engdviTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~GtllS-GgKDRki~~Wd-~~y~k~r~~elPe--  327 (626)
T KOG2106|consen  252 VTFLENGDVITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGTLLS-GGKDRKIILWD-DNYRKLRETELPE--  327 (626)
T ss_pred             EEEcCCCCEEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCccEee-cCccceEEecc-ccccccccccCch--
Confidence            9999999877665554443332222233334448999999999999887555 99999999999 3332222222211  


Q ss_pred             EEEecCCCcccCCCCceeEEeeCCCCCeEEEEeCCCeEEEEcCCCcceeecccccCCeEEEEEccCCCEEEEEecCCcEE
Q psy12697        267 RHCISKGGTEVPSNKDVTSLDWNNNGSFLATGSYDGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTI  346 (602)
Q Consensus       267 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~  346 (602)
                                  ..+.|..++=...+  |++|+..+.|.-=.+++.......+|......++.+|+.+++++++.|+.++
T Consensus       328 ------------~~G~iRtv~e~~~d--i~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~  393 (626)
T KOG2106|consen  328 ------------QFGPIRTVAEGKGD--ILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVR  393 (626)
T ss_pred             ------------hcCCeeEEecCCCc--EEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEE
Confidence                        13566666644333  8888888888777788777778889999999999999999999999999999


Q ss_pred             EEeCCCCceeEEeeeccCCeeeeeccCCCeEEEeeCCCeEEEEEcCCCceeeEeccCCCCeEEEEECCCCCEEEEEECCC
Q psy12697        347 IWDAASGQCEQQFSFHSAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDM  426 (602)
Q Consensus       347 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg  426 (602)
                      +|+  ..+.+.. .....+..++.|.|.+.+++|...|...+.|.++...+..-.. ..++++++|+|+|.+||.|+.|+
T Consensus       394 lW~--~~k~~wt-~~~~d~~~~~~fhpsg~va~Gt~~G~w~V~d~e~~~lv~~~~d-~~~ls~v~ysp~G~~lAvgs~d~  469 (626)
T KOG2106|consen  394 LWN--DHKLEWT-KIIEDPAECADFHPSGVVAVGTATGRWFVLDTETQDLVTIHTD-NEQLSVVRYSPDGAFLAVGSHDN  469 (626)
T ss_pred             Ecc--CCceeEE-EEecCceeEeeccCcceEEEeeccceEEEEecccceeEEEEec-CCceEEEEEcCCCCEEEEecCCC
Confidence            999  3333333 3345678899999999999999999999999999666655554 88999999999999999999999


Q ss_pred             eEEEEeCCCCeeeE-eeccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCCCeEE
Q psy12697        427 TLKIWSLDKDNCVH-DLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTI  505 (602)
Q Consensus       427 ~i~iwd~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~  505 (602)
                      .|+||.+....... ....                                 .+.++|+.+.||+|+++|.+-+.|-.|.
T Consensus       470 ~iyiy~Vs~~g~~y~r~~k---------------------------------~~gs~ithLDwS~Ds~~~~~~S~d~eiL  516 (626)
T KOG2106|consen  470 HIYIYRVSANGRKYSRVGK---------------------------------CSGSPITHLDWSSDSQFLVSNSGDYEIL  516 (626)
T ss_pred             eEEEEEECCCCcEEEEeee---------------------------------ecCceeEEeeecCCCceEEeccCceEEE
Confidence            99999987543222 2211                                 1237788999999999999999999999


Q ss_pred             EEeCCCCceeeee------------------cccCCCeeEeeecCCc-eEEEeeCCCcEEEeecCCCCceeeeecccccc
Q psy12697        506 IWDAASGQCEQQF------------------SFHSAPALDVDWQSNT-SFASCSTDQHIHVCKLHSDKPVKSFEGHTTGQ  566 (602)
Q Consensus       506 iwd~~~~~~~~~~------------------~~~~~~v~~~~~s~~~-~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~  566 (602)
                      .|....-+.+...                  -.+...+..++-+.+. .+|+|...|.|++|...-.++...        
T Consensus       517 yW~~~~~~~~ts~kDvkW~t~~c~lGF~v~g~s~~t~i~a~~rs~~~~~lA~gdd~g~v~lf~yPc~s~rA~--------  588 (626)
T KOG2106|consen  517 YWKPSECKQITSVKDVKWATYTCTLGFEVFGGSDGTDINAVARSHCEKLLASGDDFGKVHLFSYPCSSPRAP--------  588 (626)
T ss_pred             EEccccCcccceecceeeeeeEEEEEEEEecccCCchHHHhhhhhhhhhhhccccCceEEEEccccCCCccc--------
Confidence            9954322211111                  1244456667777777 889999999999998643222111        


Q ss_pred             eEEEEec-CCcEEEEEECCCCCeEEEeccCCeEEe
Q psy12697        567 LVHSYKG-TGGIFEVCWNSRGDKVGASASDGSVFK  600 (602)
Q Consensus       567 ~~~~~~~-~~~i~~l~~spdg~~l~~~~~dg~v~i  600 (602)
                       .+.+.+ .+.|.+++|..+..+|.+.+.|.+|..
T Consensus       589 -~he~~ghs~~vt~V~Fl~~d~~li~tg~D~Si~q  622 (626)
T KOG2106|consen  589 -SHEYGGHSSHVTNVAFLCKDSHLISTGKDTSIMQ  622 (626)
T ss_pred             -ceeeccccceeEEEEEeeCCceEEecCCCceEEE
Confidence             112222 367999999999999999989988764

>KOG0275|consensus

Probab=100.00  E-value=3.5e-32  Score=231.20  Aligned_cols=278  Identities=19%  Similarity=0.353  Sum_probs=239.3

Q ss_pred             CCceeEEeeCCCCCeEEEEeCCCeEEEEcCC-Cccee--------ecccccCCeEEEEEccCCCEEEEEecCCcEEEEeC
Q psy12697        280 NKDVTSLDWNNNGSFLATGSYDGYARIWTSD-GSLKS--------TLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDA  350 (602)
Q Consensus       280 ~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~-~~~~~--------~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~  350 (602)
                      ...+.|..|+|||++|++|+.||.|.+|+.. |+..+        .+.-+..+|.|+.|+.|...+++|+.||.|++|.+
T Consensus       213 KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri  292 (508)
T KOG0275|consen  213 KSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRI  292 (508)
T ss_pred             ccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEEE
Confidence            4668899999999999999999999999954 44333        23457889999999999999999999999999999


Q ss_pred             CCCceeEEee-eccCCeeeeeccCCC-eEEEeeCCCeEEEEEcCCCceeeEeccCCCCeEEEEECCCCCEEEEEECCCeE
Q psy12697        351 ASGQCEQQFS-FHSAPALDVDWQSNT-SFASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTL  428 (602)
Q Consensus       351 ~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i  428 (602)
                      ++|.|++.+. .|...++++.|+.++ .+++++.|.++++--+++++.++.+++|.+.|+...|.++|..+++++.||+|
T Consensus       293 ~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgtv  372 (508)
T KOG0275|consen  293 ETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISASSDGTV  372 (508)
T ss_pred             ecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEecCCccE
Confidence            9999999987 799999999999874 59999999999999999999999999999999999999999999999999999


Q ss_pred             EEEeCCCCeeeEeeccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEcc-CCCEEEEEeCCCeEEEE
Q psy12697        429 KIWSLDKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNK-RGNYILSAGVDKTTIIW  507 (602)
Q Consensus       429 ~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~-~~~~l~s~~~dg~i~iw  507 (602)
                      ++|+.++.+++.+++....                                ..+|+.+..-| +-..++.+....+|+|.
T Consensus       373 kvW~~KtteC~~Tfk~~~~--------------------------------d~~vnsv~~~PKnpeh~iVCNrsntv~im  420 (508)
T KOG0275|consen  373 KVWHGKTTECLSTFKPLGT--------------------------------DYPVNSVILLPKNPEHFIVCNRSNTVYIM  420 (508)
T ss_pred             EEecCcchhhhhhccCCCC--------------------------------cccceeEEEcCCCCceEEEEcCCCeEEEE
Confidence            9999999999998875432                                22333333333 33568888889999999


Q ss_pred             eCCCCceeeeecc---cCCCeeEeeecCCc-eEEEeeCCCcEEEeecCCCCceeeeecccccceEEEEecCCcEEEEEEC
Q psy12697        508 DAASGQCEQQFSF---HSAPALDVDWQSNT-SFASCSTDQHIHVCKLHSDKPVKSFEGHTTGQLVHSYKGTGGIFEVCWN  583 (602)
Q Consensus       508 d~~~~~~~~~~~~---~~~~v~~~~~s~~~-~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s  583 (602)
                      ++. |+.++.+..   ..+...+.+.||.| ++.+.+.|+.++.|.+.+|+...++..|.           ..+..++-+
T Consensus       421 n~q-GQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhE-----------kdvIGl~HH  488 (508)
T KOG0275|consen  421 NMQ-GQVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHE-----------KDVIGLTHH  488 (508)
T ss_pred             ecc-ceEEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeeccc-----------ccccccccC
Confidence            986 777777764   34457778899999 99999999999999999998888887776           557789999


Q ss_pred             CCCCeEEEeccCCeEEee
Q psy12697        584 SRGDKVGASASDGSVFKN  601 (602)
Q Consensus       584 pdg~~l~~~~~dg~v~i~  601 (602)
                      |..+.||+-++||.++++
T Consensus       489 PHqNllAsYsEDgllKLW  506 (508)
T KOG0275|consen  489 PHQNLLASYSEDGLLKLW  506 (508)
T ss_pred             cccchhhhhcccchhhhc
Confidence            999999999999998765

>KOG0278|consensus

Probab=100.00  E-value=4.7e-32  Score=222.04  Aligned_cols=275  Identities=22%  Similarity=0.397  Sum_probs=241.4

Q ss_pred             CCCCceeEEeeCC---CCCeEEEEeCCCeEEEEcCC-CcceeecccccCCeEEEEEccCCCEEEEEecCCcEEEEeCCCC
Q psy12697        278 PSNKDVTSLDWNN---NGSFLATGSYDGYARIWTSD-GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASG  353 (602)
Q Consensus       278 ~~~~~i~~~~~~~---~~~~l~~~~~dg~i~i~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~~  353 (602)
                      .|..+|..++|+|   +|-+|++++.||.-.+-+-+ |.-+-++.+|.+.|++.+.+.+...-++++.|=+.++||.-+|
T Consensus        12 ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~na~~aasaaadftakvw~a~tg   91 (334)
T KOG0278|consen   12 GHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTG   91 (334)
T ss_pred             CCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhhhhhh
Confidence            4678999999987   88999999999988777654 7788899999999999999999888899999999999999999


Q ss_pred             ceeEEeeeccCCeeeeeccCC-CeEEEeeCCCeEEEEEcCCC-ceeeEeccCCCCeEEEEECCCCCEEEEEECCCeEEEE
Q psy12697        354 QCEQQFSFHSAPALDVDWQSN-TSFASCSTDQHIHVCKLHSD-KPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIW  431 (602)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~i~d~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw  431 (602)
                      ..+..+. |..-+..++|+.+ ..+++|+.+..+++||++.. .+...+.+|.+.|..+.|....+.+++.++|++||+|
T Consensus        92 delhsf~-hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLW  170 (334)
T KOG0278|consen   92 DELHSFE-HKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLW  170 (334)
T ss_pred             hhhhhhh-hhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeeccCCceEEE
Confidence            8887775 6677889999887 56999999999999999875 4778899999999999999999999999999999999


Q ss_pred             eCCCCeeeEeeccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCCCeEEEEeCCC
Q psy12697        432 SLDKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAAS  511 (602)
Q Consensus       432 d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~~~  511 (602)
                      |.+++..++++..                                   ..+|+++.++++|++|.++ ..+.|.+||..+
T Consensus       171 D~rTgt~v~sL~~-----------------------------------~s~VtSlEvs~dG~ilTia-~gssV~Fwdaks  214 (334)
T KOG0278|consen  171 DHRTGTEVQSLEF-----------------------------------NSPVTSLEVSQDGRILTIA-YGSSVKFWDAKS  214 (334)
T ss_pred             EeccCcEEEEEec-----------------------------------CCCCcceeeccCCCEEEEe-cCceeEEecccc
Confidence            9999998888753                                   4567777788888877665 466799999999


Q ss_pred             CceeeeecccCCCeeEeeecCCc-eEEEeeCCCcEEEeecCCCCceeee-ecccccceEEEEecCCcEEEEEECCCCCeE
Q psy12697        512 GQCEQQFSFHSAPALDVDWQSNT-SFASCSTDQHIHVCKLHSDKPVKSF-EGHTTGQLVHSYKGTGGIFEVCWNSRGDKV  589 (602)
Q Consensus       512 ~~~~~~~~~~~~~v~~~~~s~~~-~l~~~~~d~~i~iw~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~l~~spdg~~l  589 (602)
                      ..++..+.. ...|.+..++|+. .+++|+.|..++.||..+++.+..+ ++|.           ++|-++.|+|||...
T Consensus       215 f~~lKs~k~-P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~-----------gpVhcVrFSPdGE~y  282 (334)
T KOG0278|consen  215 FGLLKSYKM-PCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHF-----------GPVHCVRFSPDGELY  282 (334)
T ss_pred             ccceeeccC-ccccccccccCCCceEEecCcceEEEEEeccCCceeeecccCCC-----------CceEEEEECCCCcee
Confidence            999888773 4568999999999 9999999999999999999887775 5554           899999999999999


Q ss_pred             EEeccCCeEEee
Q psy12697        590 GASASDGSVFKN  601 (602)
Q Consensus       590 ~~~~~dg~v~i~  601 (602)
                      |+|+.||+|+|+
T Consensus       283 AsGSEDGTirlW  294 (334)
T KOG0278|consen  283 ASGSEDGTIRLW  294 (334)
T ss_pred             eccCCCceEEEE
Confidence            999999999987

>KOG0973|consensus

Probab=100.00  E-value=7.6e-31  Score=258.42  Aligned_cols=283  Identities=25%  Similarity=0.424  Sum_probs=238.7

Q ss_pred             CCceeEEeeCCCCCeEEEEe--CCCeEEEEcCCC-------------cceeecccccCCeEEEEEccCCCEEEEEecCCc
Q psy12697        280 NKDVTSLDWNNNGSFLATGS--YDGYARIWTSDG-------------SLKSTLGQHKGPIFALKWNKRGNYILSAGVDKT  344 (602)
Q Consensus       280 ~~~i~~~~~~~~~~~l~~~~--~dg~i~i~~~~~-------------~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~  344 (602)
                      ...|.+++.+|+|..+++|+  .||.+++|+.+.             +.+.....|.+.|.|+.|+|||++|++|+.|+.
T Consensus        13 ~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~   92 (942)
T KOG0973|consen   13 EKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRL   92 (942)
T ss_pred             CeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCcce
Confidence            45699999999999999999  899999998441             234456689999999999999999999999999


Q ss_pred             EEEEeCCC------------------CceeEEeeeccCCeeeeeccCCCe-EEEeeCCCeEEEEEcCCCceeeEeccCCC
Q psy12697        345 TIIWDAAS------------------GQCEQQFSFHSAPALDVDWQSNTS-FASCSTDQHIHVCKLHSDKPVKSFEGHTN  405 (602)
Q Consensus       345 i~~wd~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~i~d~~~~~~~~~~~~~~~  405 (602)
                      |.+|+-..                  .++...+..|...|.+++|+|++. +++++.|++|.+|+..+.+.+..+.+|.+
T Consensus        93 v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s  172 (942)
T KOG0973|consen   93 VMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLRGHQS  172 (942)
T ss_pred             EEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccceeeeeeecccc
Confidence            99998762                  135667788999999999999854 78899999999999999999999999999


Q ss_pred             CeEEEEECCCCCEEEEEECCCeEEEEeCCCCeeeEeeccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEE
Q psy12697        406 EVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFA  485 (602)
Q Consensus       406 ~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  485 (602)
                      .|..+.|+|-|++||+-++|++|++|++.+....+.+..+-...                            .....+..
T Consensus       173 ~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~----------------------------~~~T~f~R  224 (942)
T KOG0973|consen  173 LVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEES----------------------------PLTTFFLR  224 (942)
T ss_pred             cccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhC----------------------------CCcceeee
Confidence            99999999999999999999999999988777776665543211                            12345677


Q ss_pred             EEEccCCCEEEEEeC----CCeEEEEeCCCCceeeeecccCCCeeEeeecCC------c------------eEEEeeCCC
Q psy12697        486 LKWNKRGNYILSAGV----DKTTIIWDAASGQCEQQFSFHSAPALDVDWQSN------T------------SFASCSTDQ  543 (602)
Q Consensus       486 i~~s~~~~~l~s~~~----dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~------~------------~l~~~~~d~  543 (602)
                      +.|||||++|++.-.    -.++.|.+-.+.+.-..+-+|.+++.++.|+|.      .            .+|+|+.|+
T Consensus       225 lSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDr  304 (942)
T KOG0973|consen  225 LSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDR  304 (942)
T ss_pred             cccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCc
Confidence            889999999998632    346889998888888999999999999999872      1            478899999


Q ss_pred             cEEEeecCCCCceeeeecccccceEEEEecCCcEEEEEECCCCCeEEEeccCCeEEe
Q psy12697        544 HIHVCKLHSDKPVKSFEGHTTGQLVHSYKGTGGIFEVCWNSRGDKVGASASDGSVFK  600 (602)
Q Consensus       544 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~v~i  600 (602)
                      +|-||.....+|+.......          ...|.+++|+|||..|++++-||+|.+
T Consensus       305 SlSVW~T~~~RPl~vi~~lf----------~~SI~DmsWspdG~~LfacS~DGtV~~  351 (942)
T KOG0973|consen  305 SLSVWNTALPRPLFVIHNLF----------NKSIVDMSWSPDGFSLFACSLDGTVAL  351 (942)
T ss_pred             cEEEEecCCCCchhhhhhhh----------cCceeeeeEcCCCCeEEEEecCCeEEE
Confidence            99999987777776554322          367999999999999999999999875

>KOG0300|consensus

Probab=100.00  E-value=6.8e-31  Score=222.75  Aligned_cols=326  Identities=19%  Similarity=0.319  Sum_probs=250.8

Q ss_pred             eeeeeeeccCCceEEEEECCCCCeEEEeeCCceEEEEecCCceeEEEeeccCceEEEEeCCCCCCCCCCCCccccccccc
Q psy12697        131 ECLNTLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKGTGGIFEVCWNSRGTPPNPPESMEVDASIEI  210 (602)
Q Consensus       131 ~~~~~l~~h~~~V~~~~~s~d~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (602)
                      +.++.+.||.+.|+.++.......+.+++.|.+.+||.+++|.++.                                  
T Consensus       139 ~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~----------------------------------  184 (481)
T KOG0300|consen  139 RLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLA----------------------------------  184 (481)
T ss_pred             eehhhhcccccceeeehhhcCCcceeecccccceeEEeecccccee----------------------------------
Confidence            5677889999999999998888899999999999999999999984                                  


Q ss_pred             cCCcceEeeCCCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEeeCC
Q psy12697        211 PQSKATKLIGHESEVFICAWNPVKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNN  290 (602)
Q Consensus       211 ~~~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  290 (602)
                            .+.||.+.|.++.|++.+.++++++.|++..||...-.-........  ..+.   .      .....+-   .
T Consensus       185 ------~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~--~~hS---s------EeE~e~s---D  244 (481)
T KOG0300|consen  185 ------TYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAP--SDHS---S------EEEEEHS---D  244 (481)
T ss_pred             ------eecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCC--CCCC---c------hhhhhcc---c
Confidence                  45689999999999999999999999999999984322111110000  0000   0      0000000   0


Q ss_pred             CCCeEEEE--eCC-CeEEEEcCCCcceeecccccCCeEEEEEccCCCEEEEEecCCcEEEEeCCCCceeEEeeeccCCee
Q psy12697        291 NGSFLATG--SYD-GYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPAL  367 (602)
Q Consensus       291 ~~~~l~~~--~~d-g~i~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~  367 (602)
                      .......+  ..| ..|++      .+..+.+|.+.|.+..|...|+.+++++.|.+..+||+++++.+..+.+|.....
T Consensus       245 e~~~d~d~~~~sD~~tiRv------Pl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELt  318 (481)
T KOG0300|consen  245 EHNRDTDSSEKSDGHTIRV------PLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELT  318 (481)
T ss_pred             ccccccccccccCCceeee------eeeeeeccccceEehhhhcCcceeeeeeccccceeeeeccCceeccccCcchhcc
Confidence            00000000  111 12332      4556778999999999999999999999999999999999999999999999999


Q ss_pred             eeeccCCCe-EEEeeCCCeEEEEEcCCC-ceeeEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCe-eeEeecc
Q psy12697        368 DVDWQSNTS-FASCSTDQHIHVCKLHSD-KPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDN-CVHDLQA  444 (602)
Q Consensus       368 ~~~~~~~~~-~~~~~~~~~i~i~d~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~  444 (602)
                      .++-.|... +++.+.|.+.++||.+.. ..+..|++|.+.|+++.|..+. .+++|++|.+|++||+++.+ ++.+++ 
T Consensus       319 HcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd-~vVSgSDDrTvKvWdLrNMRsplATIR-  396 (481)
T KOG0300|consen  319 HCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDD-RVVSGSDDRTVKVWDLRNMRSPLATIR-  396 (481)
T ss_pred             ccccCCcceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEecCC-ceeecCCCceEEEeeeccccCcceeee-
Confidence            888888865 567788999999999854 4578899999999999998765 58899999999999998764 333332 


Q ss_pred             ccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCceee----eecc
Q psy12697        445 HNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQ----QFSF  520 (602)
Q Consensus       445 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~----~~~~  520 (602)
                                                        -.++++.++.+..+..++.--.+..|++||+...++.+    .-.+
T Consensus       397 ----------------------------------tdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqg  442 (481)
T KOG0300|consen  397 ----------------------------------TDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLARLPRTSRQG  442 (481)
T ss_pred             ----------------------------------cCCccceeEeecCCceEEeccCCceEEEEecCCCccccCCcccccc
Confidence                                              23556677777777889988889999999997444322    2347


Q ss_pred             cCCCeeEeeecCCc---eEEEeeCCCcEEEeecCC
Q psy12697        521 HSAPALDVDWQSNT---SFASCSTDQHIHVCKLHS  552 (602)
Q Consensus       521 ~~~~v~~~~~s~~~---~l~~~~~d~~i~iw~~~~  552 (602)
                      |..-|+|++|..+.   .|++|+.|..+.-|++..
T Consensus       443 HrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in~  477 (481)
T KOG0300|consen  443 HRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKINT  477 (481)
T ss_pred             cceeeeeeeccccCcccccccccccceeeeeEecc
Confidence            88899999998765   799999999999999754

>KOG1446|consensus

Probab=100.00  E-value=5.4e-29  Score=212.11  Aligned_cols=289  Identities=16%  Similarity=0.262  Sum_probs=222.0

Q ss_pred             eeeeeeeccCCceEEEEECCCCCeEEEeeCCceEEEEecCCceeEEEeeccCceEEEEeCCCCCCCCCCCCccccccccc
Q psy12697        131 ECLNTLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKGTGGIFEVCWNSRGTPPNPPESMEVDASIEI  210 (602)
Q Consensus       131 ~~~~~l~~h~~~V~~~~~s~d~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (602)
                      +..+.+..-.+.|+++.|+++|.+|++++.|.+++|||..+|+.++++.                               
T Consensus         5 ~~ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~-------------------------------   53 (311)
T KOG1446|consen    5 RPAKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTIN-------------------------------   53 (311)
T ss_pred             ccccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEee-------------------------------
Confidence            3445566678899999999999999999999999999999999886543                               


Q ss_pred             cCCcceEeeCCCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEeeCC
Q psy12697        211 PQSKATKLIGHESEVFICAWNPVKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNN  290 (602)
Q Consensus       211 ~~~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  290 (602)
                               .+...+..+.|....+.++.++.                                                
T Consensus        54 ---------skkyG~~~~~Fth~~~~~i~sSt------------------------------------------------   76 (311)
T KOG1446|consen   54 ---------SKKYGVDLACFTHHSNTVIHSST------------------------------------------------   76 (311)
T ss_pred             ---------cccccccEEEEecCCceEEEccC------------------------------------------------
Confidence                     34445555666555544444443                                                


Q ss_pred             CCCeEEEEeCCCeEEEEcCC-CcceeecccccCCeEEEEEccCCCEEEEEecCCcEEEEeCCCCceeEEeeeccCCeeee
Q psy12697        291 NGSFLATGSYDGYARIWTSD-GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDV  369 (602)
Q Consensus       291 ~~~~l~~~~~dg~i~i~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~  369 (602)
                              -.|..|++.++. .+.++.+.+|...|.+++.+|-++.+++++.|++|++||++..++...+.....+  .+
T Consensus        77 --------k~d~tIryLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~p--i~  146 (311)
T KOG1446|consen   77 --------KEDDTIRYLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRP--IA  146 (311)
T ss_pred             --------CCCCceEEEEeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCCc--ce
Confidence                    012233333332 3456677899999999999999999999999999999999988887766655444  45


Q ss_pred             eccCCCeEEEeeC-CCeEEEEEcCCC--ceeeEecc---CCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeeeEeec
Q psy12697        370 DWQSNTSFASCST-DQHIHVCKLHSD--KPVKSFEG---HTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHDLQ  443 (602)
Q Consensus       370 ~~~~~~~~~~~~~-~~~i~i~d~~~~--~~~~~~~~---~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  443 (602)
                      +|.|.+.+++.+. .+.|++||++..  .|..++.-   ...+.+.+.|+|||++++.+...+.+++.|.-+|....++.
T Consensus       147 AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs  226 (311)
T KOG1446|consen  147 AFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFS  226 (311)
T ss_pred             eECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEe
Confidence            6788887555544 449999999864  35454443   36679999999999999999999999999999998877776


Q ss_pred             cccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeeecc-cC
Q psy12697        444 AHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSF-HS  522 (602)
Q Consensus       444 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~  522 (602)
                      .+...                              ...+ ...+|+||++++++|+.||+|.+|+++++..+..+.+ +.
T Consensus       227 ~~~~~------------------------------~~~~-~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~  275 (311)
T KOG1446|consen  227 GYPNA------------------------------GNLP-LSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNG  275 (311)
T ss_pred             eccCC------------------------------CCcc-eeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCCCC
Confidence            54331                              1111 4678999999999999999999999999999999998 68


Q ss_pred             CCeeEeeecCCc-eEEEeeCCCcEEEeec
Q psy12697        523 APALDVDWQSNT-SFASCSTDQHIHVCKL  550 (602)
Q Consensus       523 ~~v~~~~~s~~~-~l~~~~~d~~i~iw~~  550 (602)
                      .++.++.|+|.- .++++  +..+.+|=.
T Consensus       276 ~~~~~~~fnP~~~mf~sa--~s~l~fw~p  302 (311)
T KOG1446|consen  276 GPVSCVRFNPRYAMFVSA--SSNLVFWLP  302 (311)
T ss_pred             CCccccccCCceeeeeec--CceEEEEec
Confidence            899999999997 55554  456777854

>KOG1539|consensus

Probab=99.98  E-value=7.8e-30  Score=243.28  Aligned_cols=400  Identities=15%  Similarity=0.206  Sum_probs=300.9

Q ss_pred             ceeccceeeeecccceeeeeeeccCCceEEEEECCCCC-eEEEeeCCceEEEEecCCceeEEEeec--cCceEEEEeCCC
Q psy12697        116 EVHRLTLPLWDVERGECLNTLTRHTEPVYSVAFSPDGK-FLASGSFDKCVHIWSARTGQLVHSYKG--TGGIFEVCWNSR  192 (602)
Q Consensus       116 ~~~~~~i~vwd~~~~~~~~~l~~h~~~V~~~~~s~d~~-~l~s~~~d~~v~iwd~~~~~~~~~~~~--~~~~~~~~~~~~  192 (602)
                      +...++|.|++++.++.+.+|+...+.|++++|..||+ .||+|+..|.+.+||++..+++.....  .+++....|.+.
T Consensus       220 G~~~G~ViifNlK~dkil~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~  299 (910)
T KOG1539|consen  220 GLENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPG  299 (910)
T ss_pred             eccCceEEEEEcccCcEEEEEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCC
Confidence            44578999999999999999997789999999999998 567777889999999999888776652  245555555554


Q ss_pred             CCCCCCCCCccccccc--cc---cCCcceEeeCCCcceEEEEEc-CCCCEEEEeeCCCcEEEEeCCCCCCCCCccceEEE
Q psy12697        193 GTPPNPPESMEVDASI--EI---PQSKATKLIGHESEVFICAWN-PVKDFLASGSGDSTARIWDMTDSTKKDPKELQIVL  266 (602)
Q Consensus       193 ~~~~~~~~~~~~~~~~--~~---~~~~~~~l~~h~~~v~~~~~~-~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~  266 (602)
                      ...+...........+  +.   .....+.-.||..+..++.|. .++..+.+++.|++.+.+++...............
T Consensus       300 epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~  379 (910)
T KOG1539|consen  300 EPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNK  379 (910)
T ss_pred             CceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccc
Confidence            4433332222211111  11   123345566999999999998 57899999999999999887554332221110000


Q ss_pred             EEEecCC--CcccCCCCceeEEeeCCC-----CCeEEEEeCCCeEEEEcCCCcce--e-----ecccccCCeEEEEEccC
Q psy12697        267 RHCISKG--GTEVPSNKDVTSLDWNNN-----GSFLATGSYDGYARIWTSDGSLK--S-----TLGQHKGPIFALKWNKR  332 (602)
Q Consensus       267 ~~~~~~~--~~~~~~~~~i~~~~~~~~-----~~~l~~~~~dg~i~i~~~~~~~~--~-----~~~~~~~~i~~~~~~~~  332 (602)
                      ......+  ......-.+|..+++...     .+.+++.-.+...+.|+.+....  .     .+......+++++.++.
T Consensus       380 ~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~C  459 (910)
T KOG1539|consen  380 KRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFC  459 (910)
T ss_pred             cccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEecc
Confidence            0000000  011122356777777652     34455555667899999774332  1     12224477999999999


Q ss_pred             CCEEEEEecCCcEEEEeCCCCceeEEe---eeccCCeeeeeccCC-CeEEEeeCCCeEEEEEcCCCceeeEeccCCCCeE
Q psy12697        333 GNYILSAGVDKTTIIWDAASGQCEQQF---SFHSAPALDVDWQSN-TSFASCSTDQHIHVCKLHSDKPVKSFEGHTNEVN  408 (602)
Q Consensus       333 ~~~l~~~~~dg~i~~wd~~~~~~~~~~---~~~~~~~~~~~~~~~-~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~  408 (602)
                      |++.+.|...|.|-+|++++|.....+   ..|..++..++...- ..+++++.+|.+.+||.....++..+. -...+.
T Consensus       460 GNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~-l~~~~~  538 (910)
T KOG1539|consen  460 GNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLR-LGSSIT  538 (910)
T ss_pred             CceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeec-cCCCcc
Confidence            999999999999999999999888888   578999999988764 568899999999999999988777766 345688


Q ss_pred             EEEECCCCCEEEEEECCCeEEEEeCCCCeeeEeeccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEE
Q psy12697        409 AIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKW  488 (602)
Q Consensus       409 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~  488 (602)
                      ++..+.....++.+.+|-.|+++|..+.+.++.+.+|                                  ...|++++|
T Consensus       539 ~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh----------------------------------~nritd~~F  584 (910)
T KOG1539|consen  539 GIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGH----------------------------------GNRITDMTF  584 (910)
T ss_pred             eeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhcc----------------------------------ccceeeeEe
Confidence            8888888889999999999999999988888777664                                  555666777


Q ss_pred             ccCCCEEEEEeCCCeEEEEeCCCCceeeeecccCCCeeEeeecCCc-eEEEeeCC-CcEEEeecC
Q psy12697        489 NKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNT-SFASCSTD-QHIHVCKLH  551 (602)
Q Consensus       489 s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~-~l~~~~~d-~~i~iw~~~  551 (602)
                      ||||++|++++.|++|++||+.++.++..+. -..+.+++.|||+| +||+...| ..|++|.=.
T Consensus       585 S~DgrWlisasmD~tIr~wDlpt~~lID~~~-vd~~~~sls~SPngD~LAT~Hvd~~gIylWsNk  648 (910)
T KOG1539|consen  585 SPDGRWLISASMDSTIRTWDLPTGTLIDGLL-VDSPCTSLSFSPNGDFLATVHVDQNGIYLWSNK  648 (910)
T ss_pred             CCCCcEEEEeecCCcEEEEeccCcceeeeEe-cCCcceeeEECCCCCEEEEEEecCceEEEEEch
Confidence            7799999999999999999999999998776 56789999999999 99999988 679999743

>KOG1446|consensus

Probab=99.98  E-value=6.6e-29  Score=211.55  Aligned_cols=274  Identities=21%  Similarity=0.263  Sum_probs=232.7

Q ss_pred             CCceeEEeeCCCCCeEEEEeCCCeEEEEcCC-CcceeecccccCCeEEEEEccCCCEEEEEec--CCcEEEEeCCCCcee
Q psy12697        280 NKDVTSLDWNNNGSFLATGSYDGYARIWTSD-GSLKSTLGQHKGPIFALKWNKRGNYILSAGV--DKTTIIWDAASGQCE  356 (602)
Q Consensus       280 ~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~--dg~i~~wd~~~~~~~  356 (602)
                      ...|.++.|+++|.++++++.|..+++||.. +....++..++-.+..++|....+.++.++.  |.+|+..++.+.+.+
T Consensus        14 ~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dNkyl   93 (311)
T KOG1446|consen   14 NGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDNKYL   93 (311)
T ss_pred             CCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEeecCceE
Confidence            5789999999999999999999999999965 7888888888888999999888888887776  889999999999999


Q ss_pred             EEeeeccCCeeeeeccCC-CeEEEeeCCCeEEEEEcCCCceeeEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEeCCC
Q psy12697        357 QQFSFHSAPALDVDWQSN-TSFASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDK  435 (602)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~  435 (602)
                      +.+.+|...|..+..+|. ..|++++.|++|++||++..++...+....  -..++|+|+|-++|++.....|++||++.
T Consensus        94 RYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~--~pi~AfDp~GLifA~~~~~~~IkLyD~Rs  171 (311)
T KOG1446|consen   94 RYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSG--RPIAAFDPEGLIFALANGSELIKLYDLRS  171 (311)
T ss_pred             EEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCC--CcceeECCCCcEEEEecCCCeEEEEEecc
Confidence            999999999999999985 679999999999999999877766554333  34578999999999999888999999986


Q ss_pred             C--eeeEeeccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCc
Q psy12697        436 D--NCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQ  513 (602)
Q Consensus       436 ~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~~~~~  513 (602)
                      .  .+..++...                               .+.....+.+.|||||++|+.+...+.+++.|.-+|.
T Consensus       172 ~dkgPF~tf~i~-------------------------------~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~  220 (311)
T KOG1446|consen  172 FDKGPFTTFSIT-------------------------------DNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGT  220 (311)
T ss_pred             cCCCCceeEccC-------------------------------CCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCc
Confidence            3  223222211                               0234567889999999999999999999999999999


Q ss_pred             eeeeecccCCCe---eEeeecCCc-eEEEeeCCCcEEEeecCCCCceeeeecccccceEEEEecCCcEEEEEECCCCCeE
Q psy12697        514 CEQQFSFHSAPA---LDVDWQSNT-SFASCSTDQHIHVCKLHSDKPVKSFEGHTTGQLVHSYKGTGGIFEVCWNSRGDKV  589 (602)
Q Consensus       514 ~~~~~~~~~~~v---~~~~~s~~~-~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l  589 (602)
                      .+.++..+...-   ...+|+||+ .+++|+.||+|.+|++++++.+..+.+..          .+++.++.|+|.-.++
T Consensus       221 ~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~----------~~~~~~~~fnP~~~mf  290 (311)
T KOG1446|consen  221 VKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGPN----------GGPVSCVRFNPRYAMF  290 (311)
T ss_pred             EeeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCCC----------CCCccccccCCceeee
Confidence            999988876543   678999999 99999999999999999999998888752          3678899999999888


Q ss_pred             EEeccCC
Q psy12697        590 GASASDG  596 (602)
Q Consensus       590 ~~~~~dg  596 (602)
                      ++++..=
T Consensus       291 ~sa~s~l  297 (311)
T KOG1446|consen  291 VSASSNL  297 (311)
T ss_pred             eecCceE
Confidence            8877643

>KOG0277|consensus

Probab=99.98  E-value=4.3e-30  Score=211.20  Aligned_cols=241  Identities=25%  Similarity=0.478  Sum_probs=198.5

Q ss_pred             CCcceEEEEEcCCC-CEEEEeeCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEeeCC-CCCeEEEE
Q psy12697        221 HESEVFICAWNPVK-DFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNN-NGSFLATG  298 (602)
Q Consensus       221 h~~~v~~~~~~~~~-~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~  298 (602)
                      -.+.++.++|+++. +.+++++.||++++||+.....    ++.           ....|...|.++.|++ ++..++++
T Consensus        59 ~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~----Pi~-----------~~kEH~~EV~Svdwn~~~r~~~lts  123 (311)
T KOG0277|consen   59 TEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSK----PIH-----------KFKEHKREVYSVDWNTVRRRIFLTS  123 (311)
T ss_pred             cccceeEeeecCCCcceEEEEecCceEEEeccCCCCc----chh-----------HHHhhhhheEEeccccccceeEEee
Confidence            35678889999865 7889999999999999543322    111           2234678999999999 56678888


Q ss_pred             eCCCeEEEEcCC-CcceeecccccCCeEEEEEcc-CCCEEEEEecCCcEEEEeCCCCceeEEeeeccCCeeeeeccCC--
Q psy12697        299 SYDGYARIWTSD-GSLKSTLGQHKGPIFALKWNK-RGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSN--  374 (602)
Q Consensus       299 ~~dg~i~i~~~~-~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~--  374 (602)
                      +.|++|++|+.. .+.+.++.+|...|...+|+| ..+.+++++.|+.+++||++..-....+..|...+.++.|+.-  
T Consensus       124 SWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~  203 (311)
T KOG0277|consen  124 SWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNH  203 (311)
T ss_pred             ccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCC
Confidence            999999999976 678889999999999999999 5678899999999999999876555568899999999999864  


Q ss_pred             CeEEEeeCCCeEEEEEcCCC-ceeeEeccCCCCeEEEEECCC-CCEEEEEECCCeEEEEeCCCC-eeeEeeccccccEEE
Q psy12697        375 TSFASCSTDQHIHVCKLHSD-KPVKSFEGHTNEVNAIKWDPQ-GLLLASCSDDMTLKIWSLDKD-NCVHDLQAHNKEIYT  451 (602)
Q Consensus       375 ~~~~~~~~~~~i~i~d~~~~-~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~i~~  451 (602)
                      ..+++|+.|+.|+.||+++. .++..+.+|.-.|+.+.|||. ..+|++++.|-+++|||...+ ..+.+...|...+..
T Consensus       204 ~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g  283 (311)
T KOG0277|consen  204 NVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHHTEFVCG  283 (311)
T ss_pred             cEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhccccceEEecccccchhhhhhhhccceEEec
Confidence            66999999999999999875 578899999999999999994 468999999999999998744 445555556666665


Q ss_pred             EEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCCCeEEEEeC
Q psy12697        452 IKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDA  509 (602)
Q Consensus       452 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~  509 (602)
                      +.|++-                                 ++.++|+++.|+.++||+.
T Consensus       284 ~Dws~~---------------------------------~~~~vAs~gWDe~l~Vw~p  308 (311)
T KOG0277|consen  284 LDWSLF---------------------------------DPGQVASTGWDELLYVWNP  308 (311)
T ss_pred             cccccc---------------------------------cCceeeecccccceeeecc
Confidence            655553                                 5578999999999999984

>KOG0283|consensus

Probab=99.97  E-value=1.7e-30  Score=249.51  Aligned_cols=289  Identities=19%  Similarity=0.342  Sum_probs=209.9

Q ss_pred             CCCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEeeCC-----CCCe
Q psy12697        220 GHESEVFICAWNPVKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNN-----NGSF  294 (602)
Q Consensus       220 ~h~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-----~~~~  294 (602)
                      .|.+.|+++.|++||+|||+|+.|+.|+||.+...+........ .  .+...   .......+..+.-++     ....
T Consensus       265 ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~-~--~~~~~---~~~~~s~~~p~~s~~~~~~~~~s~  338 (712)
T KOG0283|consen  265 AHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGD-S--SCMYF---EYNANSQIEPSTSSEEKISSRTSS  338 (712)
T ss_pred             ccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccc-c--chhhh---hhhhccccCccccccccccccccc
Confidence            79999999999999999999999999999998763321100000 0  00000   000000011111111     0001


Q ss_pred             EEEEeCCCeEEE----EcCCCcceeecccccCCeEEEEEccCCCEEEEEecCCcEEEEeCCCCceeEEeeeccCCeeeee
Q psy12697        295 LATGSYDGYARI----WTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVD  370 (602)
Q Consensus       295 l~~~~~dg~i~i----~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~  370 (602)
                      .-.+.....+.+    +-+..+....+.+|.+.|.++.||.+ ++|++++.|.+|+||++...+|+..|.          
T Consensus       339 ~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn-~fLLSSSMDKTVRLWh~~~~~CL~~F~----------  407 (712)
T KOG0283|consen  339 SRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKN-NFLLSSSMDKTVRLWHPGRKECLKVFS----------  407 (712)
T ss_pred             cccccCCccccCCCccccccccchhhhhccchhheecccccC-CeeEeccccccEEeecCCCcceeeEEe----------
Confidence            111112222111    12335667788899999999999976 589999999999999998877766553          


Q ss_pred             ccCCCeEEEeeCCCeEEEEEcCCCceeeEeccCCCCeEEEEECC-CCCEEEEEECCCeEEEEeCCCCeeeEeeccccccE
Q psy12697        371 WQSNTSFASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDP-QGLLLASCSDDMTLKIWSLDKDNCVHDLQAHNKEI  449 (602)
Q Consensus       371 ~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i  449 (602)
                                                      |.+.|+|++|+| |.+++++|+-||.||||++...+.+.-...     
T Consensus       408 --------------------------------HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl-----  450 (712)
T KOG0283|consen  408 --------------------------------HNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDL-----  450 (712)
T ss_pred             --------------------------------cCCeeEEEEecccCCCcEeecccccceEEeecCcCeeEeehhh-----
Confidence                                            889999999999 889999999999999999987665543322     


Q ss_pred             EEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeeecc--c------
Q psy12697        450 YTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSF--H------  521 (602)
Q Consensus       450 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~--~------  521 (602)
                                                    ..-|++++|+|||++.+.|+.+|.+++|+....+....+..  |      
T Consensus       451 ------------------------------~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~  500 (712)
T KOG0283|consen  451 ------------------------------RDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQ  500 (712)
T ss_pred             ------------------------------hhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCcccc
Confidence                                          35678889999999999999999999999988776654432  1      


Q ss_pred             CCCeeEeeecCCc--eEEEeeCCCcEEEeecCCCCceeeeecccccceEEEEecCCcEEEEEECCCCCeEEEeccCCeEE
Q psy12697        522 SAPALDVDWQSNT--SFASCSTDQHIHVCKLHSDKPVKSFEGHTTGQLVHSYKGTGGIFEVCWNSRGDKVGASASDGSVF  599 (602)
Q Consensus       522 ~~~v~~~~~s~~~--~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~v~  599 (602)
                      ...|+.+.|.|..  .+++.+.|..|||+|+++..++..|+|....         ..=..-.|+.||++|+++++|..|+
T Consensus       501 ~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~---------~SQ~~Asfs~Dgk~IVs~seDs~VY  571 (712)
T KOG0283|consen  501 GKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNT---------SSQISASFSSDGKHIVSASEDSWVY  571 (712)
T ss_pred             CceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccC---------CcceeeeEccCCCEEEEeecCceEE
Confidence            2279999999876  6999999999999999998999888887644         2234567999999999999999999


Q ss_pred             ee
Q psy12697        600 KN  601 (602)
Q Consensus       600 i~  601 (602)
                      |+
T Consensus       572 iW  573 (712)
T KOG0283|consen  572 IW  573 (712)
T ss_pred             EE
Confidence            86

>KOG0772|consensus

Probab=99.97  E-value=5.4e-30  Score=231.17  Aligned_cols=297  Identities=20%  Similarity=0.251  Sum_probs=236.0

Q ss_pred             cccCCcceEeeCCCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEee
Q psy12697        209 EIPQSKATKLIGHESEVFICAWNPVKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDW  288 (602)
Q Consensus       209 ~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  288 (602)
                      .++......+.+|+..|.++++.|.|..|++|+.|.+|++||+......... ...          ........|.++.|
T Consensus       154 ~IP~shEi~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~-fr~----------l~P~E~h~i~sl~y  222 (641)
T KOG0772|consen  154 LIPGSHEIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRS-FRQ----------LQPCETHQINSLQY  222 (641)
T ss_pred             cCCccceEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchh-hhc----------cCcccccccceeee
Confidence            3566677888999999999999999999999999999999999765432211 110          11122467999999


Q ss_pred             CCCCCeEEEEeCCCeEEEEcCCCccee-------------ecccccCCeEEEEEccCC-CEEEEEecCCcEEEEeCCCCc
Q psy12697        289 NNNGSFLATGSYDGYARIWTSDGSLKS-------------TLGQHKGPIFALKWNKRG-NYILSAGVDKTTIIWDAASGQ  354 (602)
Q Consensus       289 ~~~~~~l~~~~~dg~i~i~~~~~~~~~-------------~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~~wd~~~~~  354 (602)
                      ++.|..|++.+.....+++|.+|..+.             ...+|...+++.+|+|.. +.+++++.||++++||+...+
T Consensus       223 s~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k  302 (641)
T KOG0772|consen  223 SVTGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTK  302 (641)
T ss_pred             cCCCCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCch
Confidence            999999999999999999998875443             335799999999999965 568899999999999998765


Q ss_pred             eeEE-e-----eeccCCeeeeeccCCCe-EEEeeCCCeEEEEEcCCCc---eeeEeccCCC--CeEEEEECCCCCEEEEE
Q psy12697        355 CEQQ-F-----SFHSAPALDVDWQSNTS-FASCSTDQHIHVCKLHSDK---PVKSFEGHTN--EVNAIKWDPQGLLLASC  422 (602)
Q Consensus       355 ~~~~-~-----~~~~~~~~~~~~~~~~~-~~~~~~~~~i~i~d~~~~~---~~~~~~~~~~--~i~~~~~~~~~~~l~~~  422 (602)
                      .... +     .+...++..++|++++. +++|..||.|.+|+..+..   ....-.+|..  .|+|+.||++|++|++=
T Consensus       303 ~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSR  382 (641)
T KOG0772|consen  303 SQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSR  382 (641)
T ss_pred             hheeEEeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhc
Confidence            3322 2     22345788899999865 7888899999999975432   2334457777  89999999999999999


Q ss_pred             ECCCeEEEEeCCCCe-eeEeeccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeC-
Q psy12697        423 SDDMTLKIWSLDKDN-CVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGV-  500 (602)
Q Consensus       423 ~~dg~i~iwd~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~-  500 (602)
                      +.|+++++||++..+ ++....+..                                ...+-+.++|||+.++|++|.. 
T Consensus       383 g~D~tLKvWDLrq~kkpL~~~tgL~--------------------------------t~~~~tdc~FSPd~kli~TGtS~  430 (641)
T KOG0772|consen  383 GFDDTLKVWDLRQFKKPLNVRTGLP--------------------------------TPFPGTDCCFSPDDKLILTGTSA  430 (641)
T ss_pred             cCCCceeeeeccccccchhhhcCCC--------------------------------ccCCCCccccCCCceEEEecccc
Confidence            999999999998753 333332211                                1234567889999999999854 


Q ss_pred             -----CCeEEEEeCCCCceeeeecccCCCeeEeeecCCc-eEEEeeCCCcEEEe
Q psy12697        501 -----DKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNT-SFASCSTDQHIHVC  548 (602)
Q Consensus       501 -----dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~-~l~~~~~d~~i~iw  548 (602)
                           .|.+.+||..+.+.+..+......|..+.|+|.- .|++|+.||.++||
T Consensus       431 ~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~WhpkLNQi~~gsgdG~~~vy  484 (641)
T KOG0772|consen  431 PNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPKLNQIFAGSGDGTAHVY  484 (641)
T ss_pred             cCCCCCceEEEEeccceeeEEEecCCCceEEEEeecchhhheeeecCCCceEEE
Confidence                 5789999999999999988888899999999988 99999999999987

>KOG0268|consensus

Probab=99.97  E-value=4.1e-31  Score=228.10  Aligned_cols=288  Identities=18%  Similarity=0.342  Sum_probs=231.8

Q ss_pred             eeeeeeeccCCceEEEEECCCC-CeEEEeeCCceEEEEecCCceeEEEeeccCceEEEEeCCCCCCCCCCCCcccccccc
Q psy12697        131 ECLNTLTRHTEPVYSVAFSPDG-KFLASGSFDKCVHIWSARTGQLVHSYKGTGGIFEVCWNSRGTPPNPPESMEVDASIE  209 (602)
Q Consensus       131 ~~~~~l~~h~~~V~~~~~s~d~-~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (602)
                      ..+..|.||.++|.|++=+|.. ..+|||+.||.|+|||+.+.+++.+                                
T Consensus        57 PFv~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~--------------------------------  104 (433)
T KOG0268|consen   57 PFVGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRT--------------------------------  104 (433)
T ss_pred             cchhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhhe--------------------------------
Confidence            3456689999999999999977 7999999999999999998887744                                


Q ss_pred             ccCCcceEeeCCCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEeeC
Q psy12697        210 IPQSKATKLIGHESEVFICAWNPVKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWN  289 (602)
Q Consensus       210 ~~~~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  289 (602)
                              +..|.+.|..+++..  ..+++++.|.+|+.|.++...      ...            ......+..+.-+
T Consensus       105 --------f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~~~p------~~t------------ilg~s~~~gIdh~  156 (433)
T KOG0268|consen  105 --------FKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKIDGPP------LHT------------ILGKSVYLGIDHH  156 (433)
T ss_pred             --------eecccCceeeEEecc--cceEEecCCcceeeeeccCCc------cee------------eeccccccccccc
Confidence                    456999999999986  779999999999999987631      111            1113556677777


Q ss_pred             CCCCeEEEEeCCCeEEEEcCC-CcceeecccccCCeEEEEEccCCC-EEEEEecCCcEEEEeCCCCceeEEeeeccCCee
Q psy12697        290 NNGSFLATGSYDGYARIWTSD-GSLKSTLGQHKGPIFALKWNKRGN-YILSAGVDKTTIIWDAASGQCEQQFSFHSAPAL  367 (602)
Q Consensus       290 ~~~~~l~~~~~dg~i~i~~~~-~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~  367 (602)
                      ..+..+++++.  .|.|||.. ...+..+.-....|.++.|+|... .|++++.|+.|.+||++++.+++..... ....
T Consensus       157 ~~~~~FaTcGe--~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~-mRTN  233 (433)
T KOG0268|consen  157 RKNSVFATCGE--QIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVILT-MRTN  233 (433)
T ss_pred             cccccccccCc--eeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccceeeee-cccc
Confidence            77778888775  58999976 556667776778899999999665 4566679999999999999888776533 3456


Q ss_pred             eeeccCCCe-EEEeeCCCeEEEEEcCCC-ceeeEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeeeEeeccc
Q psy12697        368 DVDWQSNTS-FASCSTDQHIHVCKLHSD-KPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHDLQAH  445 (602)
Q Consensus       368 ~~~~~~~~~-~~~~~~~~~i~i~d~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~  445 (602)
                      .++|+|+.. |+++++|..++.+|++.. .++....+|.+.|.++.|||.|+-+++||.|.+|+||..+.+.....+.. 
T Consensus       234 ~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYht-  312 (433)
T KOG0268|consen  234 TICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHT-  312 (433)
T ss_pred             ceecCccccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhccccccceEEEeecCCCcchhhhhH-
Confidence            789999644 889999999999999875 57888899999999999999999999999999999999886643322211 


Q ss_pred             cccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCce
Q psy12697        446 NKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQC  514 (602)
Q Consensus       446 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~~~~~~  514 (602)
                                                      .....|.++.||.|.+|+++|+.|+.|++|.....+.
T Consensus       313 --------------------------------kRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~Asek  349 (433)
T KOG0268|consen  313 --------------------------------KRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKASEK  349 (433)
T ss_pred             --------------------------------hhhheeeEEEEeccccEEEecCCCcceeeeecchhhh
Confidence                                            1235678899999999999999999999998765443

>KOG0973|consensus

Probab=99.97  E-value=1e-29  Score=250.55  Aligned_cols=312  Identities=19%  Similarity=0.328  Sum_probs=240.0

Q ss_pred             cCCceEEEEECCCCCeEEEee--CCceEEEEecCCceeEEEeeccCceEEEEeCCCCCCCCCCCCccccccccc-cCCcc
Q psy12697        139 HTEPVYSVAFSPDGKFLASGS--FDKCVHIWSARTGQLVHSYKGTGGIFEVCWNSRGTPPNPPESMEVDASIEI-PQSKA  215 (602)
Q Consensus       139 h~~~V~~~~~s~d~~~l~s~~--~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  215 (602)
                      +...|.++..+|||..+|||+  .|+.++||+.+.--.-                             ....+. -....
T Consensus        12 ~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~-----------------------------~~~~~~~l~k~l   62 (942)
T KOG0973|consen   12 NEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDE-----------------------------KEEKNENLPKHL   62 (942)
T ss_pred             CCeeEEEEEecCCceeEecCCccccccceeeccccccch-----------------------------hhhhhcccchhh
Confidence            456789999999999999999  8999999987531100                             000001 23334


Q ss_pred             eEeeCCCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCccc--eEEEEEEecCCCcccCCCCceeEEeeCCCCC
Q psy12697        216 TKLIGHESEVFICAWNPVKDFLASGSGDSTARIWDMTDSTKKDPKEL--QIVLRHCISKGGTEVPSNKDVTSLDWNNNGS  293 (602)
Q Consensus       216 ~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  293 (602)
                      .....|.+.|.|+.|+|||.+||+|+.|+.|.||.............  .......+........|...|..++|+|++.
T Consensus        63 ~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~  142 (942)
T KOG0973|consen   63 CTMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDS  142 (942)
T ss_pred             eeeccccCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCcc
Confidence            66778999999999999999999999999999999874110000000  0000000111112334789999999999999


Q ss_pred             eEEEEeCCCeEEEEcCC-CcceeecccccCCeEEEEEccCCCEEEEEecCCcEEEEeCCCCceeEEeeecc------CCe
Q psy12697        294 FLATGSYDGYARIWTSD-GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHS------APA  366 (602)
Q Consensus       294 ~l~~~~~dg~i~i~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~------~~~  366 (602)
                      ++++++.|+.|.+|+.. .+....+.+|.+.|..+.|.|-|+||++-+.|++|++|++.+..+.+.+..+.      ...
T Consensus       143 ~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f  222 (942)
T KOG0973|consen  143 LLVSVSLDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFF  222 (942)
T ss_pred             EEEEecccceEEEEccccceeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCccee
Confidence            99999999999999965 67888999999999999999999999999999999999988877776665432      346


Q ss_pred             eeeeccCCCeEEEee-----CCCeEEEEEcCCCceeeEeccCCCCeEEEEECC-----CCC------------EEEEEEC
Q psy12697        367 LDVDWQSNTSFASCS-----TDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDP-----QGL------------LLASCSD  424 (602)
Q Consensus       367 ~~~~~~~~~~~~~~~-----~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~-----~~~------------~l~~~~~  424 (602)
                      ..+.|+|++.+++..     ....+.|.+-.+-+.-..+-||..++.+++|+|     +.+            .+|+|+.
T Consensus       223 ~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSq  302 (942)
T KOG0973|consen  223 LRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQ  302 (942)
T ss_pred             eecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecC
Confidence            788999998866543     235688888888888889999999999999998     111            6899999


Q ss_pred             CCeEEEEeCCCCeeeEeeccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCCCeE
Q psy12697        425 DMTLKIWSLDKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTT  504 (602)
Q Consensus       425 dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i  504 (602)
                      |++|-||.....+++.....-                                 -...|.+++|+|||..|++++.||+|
T Consensus       303 DrSlSVW~T~~~RPl~vi~~l---------------------------------f~~SI~DmsWspdG~~LfacS~DGtV  349 (942)
T KOG0973|consen  303 DRSLSVWNTALPRPLFVIHNL---------------------------------FNKSIVDMSWSPDGFSLFACSLDGTV  349 (942)
T ss_pred             CccEEEEecCCCCchhhhhhh---------------------------------hcCceeeeeEcCCCCeEEEEecCCeE
Confidence            999999998777766554321                                 24567788888899999999999999


Q ss_pred             EEEeCCCC
Q psy12697        505 IIWDAASG  512 (602)
Q Consensus       505 ~iwd~~~~  512 (602)
                      .+..++..
T Consensus       350 ~~i~Fee~  357 (942)
T KOG0973|consen  350 ALIHFEEK  357 (942)
T ss_pred             EEEEcchH
Confidence            99988753

>KOG0772|consensus

Probab=99.97  E-value=3.6e-30  Score=232.30  Aligned_cols=294  Identities=22%  Similarity=0.321  Sum_probs=223.8

Q ss_pred             cceeeeeeeccCCceEEEEECCCCCeEEEeeCCceEEEEecCCcee-EEEeec-----cCceEEEEeCCCCCCCCCCCCc
Q psy12697        129 RGECLNTLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQL-VHSYKG-----TGGIFEVCWNSRGTPPNPPESM  202 (602)
Q Consensus       129 ~~~~~~~l~~h~~~V~~~~~s~d~~~l~s~~~d~~v~iwd~~~~~~-~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~  202 (602)
                      .+.+-..|++|+..|.++++.|.|-.++||+.|.+|++||++.-.. .+.|+.     ...+.++.|++.|..+......
T Consensus       156 P~shEi~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~  235 (641)
T KOG0772|consen  156 PGSHEIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGS  235 (641)
T ss_pred             CccceEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecC
Confidence            4556678899999999999999999999999999999999975421 112221     2357889999988877655544


Q ss_pred             cccccccccCC-------------cceEeeCCCcceEEEEEcCCC-CEEEEeeCCCcEEEEeCCCCCCCCCccceEEEEE
Q psy12697        203 EVDASIEIPQS-------------KATKLIGHESEVFICAWNPVK-DFLASGSGDSTARIWDMTDSTKKDPKELQIVLRH  268 (602)
Q Consensus       203 ~~~~~~~~~~~-------------~~~~l~~h~~~v~~~~~~~~~-~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~  268 (602)
                      .....+.....             ......||...+++.+|+|+. ..+++++.||++|+|++...+..     ..+..+
T Consensus       236 aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q-----~qVik~  310 (641)
T KOG0772|consen  236 AQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQ-----LQVIKT  310 (641)
T ss_pred             cceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhh-----eeEEee
Confidence            33222221111             123346899999999999987 68999999999999999876532     111111


Q ss_pred             EecCCCcccCCCCceeEEeeCCCCCeEEEEeCCCeEEEEcCCCc----ceeecccccC--CeEEEEEccCCCEEEEEecC
Q psy12697        269 CISKGGTEVPSNKDVTSLDWNNNGSFLATGSYDGYARIWTSDGS----LKSTLGQHKG--PIFALKWNKRGNYILSAGVD  342 (602)
Q Consensus       269 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~----~~~~~~~~~~--~i~~~~~~~~~~~l~~~~~d  342 (602)
                      .     ...+..-.++.++|+++|++||+|+.||.|.+|+..+.    ....-..|..  .|+++.||++|++|++-+.|
T Consensus       311 k-----~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D  385 (641)
T KOG0772|consen  311 K-----PAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFD  385 (641)
T ss_pred             c-----cCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCC
Confidence            1     11133457899999999999999999999999997532    2334456776  89999999999999999999


Q ss_pred             CcEEEEeCCCCc-eeEEeee--ccCCeeeeeccCCCeEEEee-------CCCeEEEEEcCCCceeeEeccCCCCeEEEEE
Q psy12697        343 KTTIIWDAASGQ-CEQQFSF--HSAPALDVDWQSNTSFASCS-------TDQHIHVCKLHSDKPVKSFEGHTNEVNAIKW  412 (602)
Q Consensus       343 g~i~~wd~~~~~-~~~~~~~--~~~~~~~~~~~~~~~~~~~~-------~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~  412 (602)
                      +++++||++..+ ++....+  ...+-+.++|+|+..++..+       ..|.+.+||..+...+.++.-....|..+.|
T Consensus       386 ~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~W  465 (641)
T KOG0772|consen  386 DTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLW  465 (641)
T ss_pred             CceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEee
Confidence            999999999764 3333332  33456788999997755443       2478999999999999888877888999999


Q ss_pred             CCCCCEEEEEECCCeEEEEe
Q psy12697        413 DPQGLLLASCSDDMTLKIWS  432 (602)
Q Consensus       413 ~~~~~~l~~~~~dg~i~iwd  432 (602)
                      +|.-+.|+.|+.||.+++|=
T Consensus       466 hpkLNQi~~gsgdG~~~vyY  485 (641)
T KOG0772|consen  466 HPKLNQIFAGSGDGTAHVYY  485 (641)
T ss_pred             cchhhheeeecCCCceEEEE
Confidence            99999999999999999874

>KOG0641|consensus

Probab=99.97  E-value=3.5e-28  Score=196.43  Aligned_cols=291  Identities=23%  Similarity=0.349  Sum_probs=232.5

Q ss_pred             eeCCCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCC------CCCccceEEEEEEecCCCcccCCCCceeEEeeCCC
Q psy12697        218 LIGHESEVFICAWNPVKDFLASGSGDSTARIWDMTDSTK------KDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNN  291 (602)
Q Consensus       218 l~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  291 (602)
                      .......|.+++|+|.|.+.+.|+...+++|-....-..      ..........+       ....|.+.|.|.+|+|+
T Consensus        28 ~l~dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~k-------r~khhkgsiyc~~ws~~  100 (350)
T KOG0641|consen   28 ILEDSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCK-------RNKHHKGSIYCTAWSPC  100 (350)
T ss_pred             EecchhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEee-------eccccCccEEEEEecCc
Confidence            445677899999999999999999999999875432211      11111111111       12346789999999999


Q ss_pred             CCeEEEEeCCCeEEEEcCCC------cceeecccccCCeEEEEEccC----CCEEEEEe-cCCcEEEEeCCCCceeEEee
Q psy12697        292 GSFLATGSYDGYARIWTSDG------SLKSTLGQHKGPIFALKWNKR----GNYILSAG-VDKTTIIWDAASGQCEQQFS  360 (602)
Q Consensus       292 ~~~l~~~~~dg~i~i~~~~~------~~~~~~~~~~~~i~~~~~~~~----~~~l~~~~-~dg~i~~wd~~~~~~~~~~~  360 (602)
                      |.++++|+.|..|++...+.      ..-..+..|.+.|..++|..+    +..|++++ .|..|.+-|..+|+....+.
T Consensus       101 geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~s  180 (350)
T KOG0641|consen  101 GELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALS  180 (350)
T ss_pred             cCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeec
Confidence            99999999999999986542      233456779999999999643    45666655 46778888999999999999


Q ss_pred             eccCCeeeeeccCCCeEEEeeCCCeEEEEEcCCCceeeEecc-------CCCCeEEEEECCCCCEEEEEECCCeEEEEeC
Q psy12697        361 FHSAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEG-------HTNEVNAIKWDPQGLLLASCSDDMTLKIWSL  433 (602)
Q Consensus       361 ~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~-------~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~  433 (602)
                      +|.+.+..+---.+-.|++|+.|.+|++||++-...+.++..       ....|.+++..|.|++|++|-.|....+||+
T Consensus       181 ghtghilalyswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydi  260 (350)
T KOG0641|consen  181 GHTGHILALYSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDI  260 (350)
T ss_pred             CCcccEEEEEEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEe
Confidence            999999998777788899999999999999998877776642       2356999999999999999999999999999


Q ss_pred             CCCeeeEeeccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCc
Q psy12697        434 DKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQ  513 (602)
Q Consensus       434 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~~~~~  513 (602)
                      +.++.++.+..|...|.++.|+                                  |...|+++++.|..|++-|+. |.
T Consensus       261 rg~r~iq~f~phsadir~vrfs----------------------------------p~a~yllt~syd~~ikltdlq-gd  305 (350)
T KOG0641|consen  261 RGGRMIQRFHPHSADIRCVRFS----------------------------------PGAHYLLTCSYDMKIKLTDLQ-GD  305 (350)
T ss_pred             eCCceeeeeCCCccceeEEEeC----------------------------------CCceEEEEecccceEEEeecc-cc
Confidence            9999999988766666555555                                  466799999999999999986 33


Q ss_pred             e-----eeeecccCCCeeEeeecCCc-eEEEeeCCCcEEEeec
Q psy12697        514 C-----EQQFSFHSAPALDVDWQSNT-SFASCSTDQHIHVCKL  550 (602)
Q Consensus       514 ~-----~~~~~~~~~~v~~~~~s~~~-~l~~~~~d~~i~iw~~  550 (602)
                      +     +.....|.+.+..+.|+|.. .+++.+.|.++.+|-+
T Consensus       306 la~el~~~vv~ehkdk~i~~rwh~~d~sfisssadkt~tlwa~  348 (350)
T KOG0641|consen  306 LAHELPIMVVAEHKDKAIQCRWHPQDFSFISSSADKTATLWAL  348 (350)
T ss_pred             hhhcCceEEEEeccCceEEEEecCccceeeeccCcceEEEecc
Confidence            2     34445689999999999999 9999999999999975

>KOG0305|consensus

Probab=99.97  E-value=1.5e-29  Score=236.74  Aligned_cols=272  Identities=21%  Similarity=0.385  Sum_probs=231.8

Q ss_pred             ceeEEeeCCCCCeEEEEeCCCeEEEEcCCCccee-ecccccCCeEEEEEccCCCEEEEEecCCcEEEEeCCCCceeEEee
Q psy12697        282 DVTSLDWNNNGSFLATGSYDGYARIWTSDGSLKS-TLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFS  360 (602)
Q Consensus       282 ~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~  360 (602)
                      ...-++|+. .+.+++|. ...|++|+.....+. ....+...|+++.|+++|.+|++|..+|.|.|||..+.+.+..+.
T Consensus       179 Y~nlldWss-~n~laVal-g~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~  256 (484)
T KOG0305|consen  179 YLNLLDWSS-ANVLAVAL-GQSVYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLR  256 (484)
T ss_pred             hhhHhhccc-CCeEEEEe-cceEEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhcccccccc
Confidence            345577884 34555553 457999997644433 333448899999999999999999999999999999999999998


Q ss_pred             e-ccCCeeeeeccCCCeEEEeeCCCeEEEEEcCCCceeeE-eccCCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCee
Q psy12697        361 F-HSAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKS-FEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNC  438 (602)
Q Consensus       361 ~-~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~-~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~  438 (602)
                      . |...+.+++|. ...+.+|+.++.|..+|++..+.... +.+|...|..+.|++|+++||+|+.|+.+.|||....++
T Consensus       257 ~~h~~rvg~laW~-~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p  335 (484)
T KOG0305|consen  257 GSHASRVGSLAWN-SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEP  335 (484)
T ss_pred             CCcCceeEEEecc-CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccc
Confidence            8 99999999999 77789999999999999998876655 889999999999999999999999999999999988888


Q ss_pred             eEeeccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEe--CCCeEEEEeCCCCceee
Q psy12697        439 VHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAG--VDKTTIIWDAASGQCEQ  516 (602)
Q Consensus       439 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~--~dg~i~iwd~~~~~~~~  516 (602)
                      ...+..|...|..++|+|-                                 ...+||+|+  .|+.|++||..++..+.
T Consensus       336 ~~~~~~H~aAVKA~awcP~---------------------------------q~~lLAsGGGs~D~~i~fwn~~~g~~i~  382 (484)
T KOG0305|consen  336 KFTFTEHTAAVKALAWCPW---------------------------------QSGLLATGGGSADRCIKFWNTNTGARID  382 (484)
T ss_pred             cEEEeccceeeeEeeeCCC---------------------------------ccCceEEcCCCcccEEEEEEcCCCcEec
Confidence            8888887777777777774                                 346788865  59999999999999998


Q ss_pred             eecccCCCeeEeeecCCc-eEEE--eeCCCcEEEeecCCCCceeeeecccccceEEEEecCCcEEEEEECCCCCeEEEec
Q psy12697        517 QFSFHSAPALDVDWQSNT-SFAS--CSTDQHIHVCKLHSDKPVKSFEGHTTGQLVHSYKGTGGIFEVCWNSRGDKVGASA  593 (602)
Q Consensus       517 ~~~~~~~~v~~~~~s~~~-~l~~--~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~  593 (602)
                      .+. -.+.|.++.|++.. .|++  |..++.|.||+..+.+++..+.+|.           ..|..+++||||..+++|+
T Consensus       383 ~vd-tgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~-----------~RVl~la~SPdg~~i~t~a  450 (484)
T KOG0305|consen  383 SVD-TGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHT-----------SRVLYLALSPDGETIVTGA  450 (484)
T ss_pred             ccc-cCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCc-----------ceeEEEEECCCCCEEEEec
Confidence            887 46789999999998 4544  4467889999999988888888887           7799999999999999999


Q ss_pred             cCCeEEee
Q psy12697        594 SDGSVFKN  601 (602)
Q Consensus       594 ~dg~v~i~  601 (602)
                      .|.++++.
T Consensus       451 ~DETlrfw  458 (484)
T KOG0305|consen  451 ADETLRFW  458 (484)
T ss_pred             ccCcEEec
Confidence            99999874

>KOG0288|consensus

Probab=99.97  E-value=1.5e-30  Score=228.55  Aligned_cols=276  Identities=21%  Similarity=0.283  Sum_probs=236.4

Q ss_pred             CCCceeEEeeCCCCCeEEEEeCCCeEEEEcCCCc---ceeecccccCCeEEEEEccCCCEEEEEecCCcEEEEeCCCCce
Q psy12697        279 SNKDVTSLDWNNNGSFLATGSYDGYARIWTSDGS---LKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQC  355 (602)
Q Consensus       279 ~~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~  355 (602)
                      |.+.+..+.|-++...|++|+.|..|++|+..+.   ...++.+..+.|+.+.|.++++++++++.|+.+++|++...+.
T Consensus       174 h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~  253 (459)
T KOG0288|consen  174 HEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRL  253 (459)
T ss_pred             cccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccchhh
Confidence            4678999999999899999999999999998754   4567777888999999999999999999999999999999999


Q ss_pred             eEEeeeccCCeeeeeccCCCe-EEEeeCCCeEEEEEcCCCceeeEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEeCC
Q psy12697        356 EQQFSFHSAPALDVDWQSNTS-FASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLD  434 (602)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~  434 (602)
                      ..++.+|...++++.|..... +++|+.|.+|+.||+....+.+++. ....+..|+.+  ...+++|-.|++|++||.+
T Consensus       254 ~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l-~~S~cnDI~~~--~~~~~SgH~DkkvRfwD~R  330 (459)
T KOG0288|consen  254 RHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVL-PGSQCNDIVCS--ISDVISGHFDKKVRFWDIR  330 (459)
T ss_pred             hhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheecccc-ccccccceEec--ceeeeecccccceEEEecc
Confidence            999999999999999987755 9999999999999999877766554 33445566665  5578899999999999999


Q ss_pred             CCeeeEeeccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCce
Q psy12697        435 KDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQC  514 (602)
Q Consensus       435 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~~~~~~  514 (602)
                      +..+......+                                   +.|+++..+++|..|.+++.|.++.+.|+.+.+.
T Consensus       331 s~~~~~sv~~g-----------------------------------g~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI  375 (459)
T KOG0288|consen  331 SADKTRSVPLG-----------------------------------GRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEI  375 (459)
T ss_pred             CCceeeEeecC-----------------------------------cceeeEeeccCCeEEeeecCCCceeeeecccccE
Confidence            98888776543                                   3566777777888999999999999999999988


Q ss_pred             eeeeccc----CCCeeEeeecCCc-eEEEeeCCCcEEEeecCCCCceeeeecccccceEEEEecCCcEEEEEECCCCCeE
Q psy12697        515 EQQFSFH----SAPALDVDWQSNT-SFASCSTDQHIHVCKLHSDKPVKSFEGHTTGQLVHSYKGTGGIFEVCWNSRGDKV  589 (602)
Q Consensus       515 ~~~~~~~----~~~v~~~~~s~~~-~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l  589 (602)
                      ...+...    ....+.+.|||++ ++++|+.||.|+||++.++++...+.....         +..|++++|+|.|..|
T Consensus       376 ~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s---------~~aI~s~~W~~sG~~L  446 (459)
T KOG0288|consen  376 RQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTS---------NAAITSLSWNPSGSGL  446 (459)
T ss_pred             EEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCC---------CcceEEEEEcCCCchh
Confidence            8777642    2348899999999 999999999999999999988777765431         2369999999999999


Q ss_pred             EEeccCCeEEee
Q psy12697        590 GASASDGSVFKN  601 (602)
Q Consensus       590 ~~~~~dg~v~i~  601 (602)
                      ++++.++.+.++
T Consensus       447 lsadk~~~v~lW  458 (459)
T KOG0288|consen  447 LSADKQKAVTLW  458 (459)
T ss_pred             hcccCCcceEec
Confidence            999999988875

>KOG0299|consensus

Probab=99.97  E-value=3.3e-29  Score=223.33  Aligned_cols=309  Identities=18%  Similarity=0.237  Sum_probs=244.8

Q ss_pred             eEeeCCCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCC-ccceEEEE-EEecCCCcccCCCCceeEEeeCCCCC
Q psy12697        216 TKLIGHESEVFICAWNPVKDFLASGSGDSTARIWDMTDSTKKDP-KELQIVLR-HCISKGGTEVPSNKDVTSLDWNNNGS  293 (602)
Q Consensus       216 ~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~  293 (602)
                      ..+..|.-++.+++++|++++.++++.+++|.-|++.++..... .+...... +..........|...+.+++.++||+
T Consensus       136 ~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgk  215 (479)
T KOG0299|consen  136 RVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGK  215 (479)
T ss_pred             eeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCc
Confidence            56678999999999999999999999999999999998875421 11111111 11111111126778999999999999


Q ss_pred             eEEEEeCCCeEEEEcCC-CcceeecccccCCeEEEEEccCCCEEEEEecCCcEEEEeCCCCceeEEeeeccCCeeeeecc
Q psy12697        294 FLATGSYDGYARIWTSD-GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQ  372 (602)
Q Consensus       294 ~l~~~~~dg~i~i~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~  372 (602)
                      +|++|+.|..|.||+.+ .+.++.+.+|.+.|.+++|-...+.|++++.|+++++|++.....+.++-+|...|..+.-.
T Consensus       216 ylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~IdaL  295 (479)
T KOG0299|consen  216 YLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGIDAL  295 (479)
T ss_pred             EEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCCccceeeechh
Confidence            99999999999999987 66777889999999999999988999999999999999999999999999999999999888


Q ss_pred             CCCeEEEee-CCCeEEEEEcCCCceeeEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeeeEeeccccccEEE
Q psy12697        373 SNTSFASCS-TDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHDLQAHNKEIYT  451 (602)
Q Consensus       373 ~~~~~~~~~-~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~  451 (602)
                      ....+++.+ .|+++++|++.. +....+.++.+.+.|++|-.+ ..+++|+++|.|.+|++.+.+++.+.+...+-+..
T Consensus       296 ~reR~vtVGgrDrT~rlwKi~e-esqlifrg~~~sidcv~~In~-~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~  373 (479)
T KOG0299|consen  296 SRERCVTVGGRDRTVRLWKIPE-ESQLIFRGGEGSIDCVAFIND-EHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPE  373 (479)
T ss_pred             cccceEEeccccceeEEEeccc-cceeeeeCCCCCeeeEEEecc-cceeeccCCceEEEeeecccCceeEeeccccccCC
Confidence            777666555 999999999943 444567788989999999754 57899999999999999999988876543322111


Q ss_pred             EEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCC----ceeeeecccCCCeeE
Q psy12697        452 IKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASG----QCEQQFSFHSAPALD  527 (602)
Q Consensus       452 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~~~~----~~~~~~~~~~~~v~~  527 (602)
                      .                      ....+..+|++++..|...++++|+.+|.|++|-++.+    +++..+. -.+-|++
T Consensus       374 ~----------------------~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls-~~GfVNs  430 (479)
T KOG0299|consen  374 L----------------------DPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLS-LVGFVNS  430 (479)
T ss_pred             c----------------------cccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecc-cccEEEE
Confidence            0                      11124479999999999999999999999999999887    3444554 5677999


Q ss_pred             eeecCCc-eEEEe-eCCCcEEEee
Q psy12697        528 VDWQSNT-SFASC-STDQHIHVCK  549 (602)
Q Consensus       528 ~~~s~~~-~l~~~-~~d~~i~iw~  549 (602)
                      ++|+++| .+++| +....+-=|-
T Consensus       431 l~f~~sgk~ivagiGkEhRlGRW~  454 (479)
T KOG0299|consen  431 LAFSNSGKRIVAGIGKEHRLGRWW  454 (479)
T ss_pred             EEEccCCCEEEEecccccccceee
Confidence            9999999 55554 4444444443

>PTZ00421 coronin; Provisional

Probab=99.97  E-value=2.2e-28  Score=238.63  Aligned_cols=246  Identities=20%  Similarity=0.272  Sum_probs=191.5

Q ss_pred             CceeEEeeCCCCCeEEEEeCCCeEEEEcCCCcc--------------eeecccccCCeEEEEEcc-CCCEEEEEecCCcE
Q psy12697        281 KDVTSLDWNNNGSFLATGSYDGYARIWTSDGSL--------------KSTLGQHKGPIFALKWNK-RGNYILSAGVDKTT  345 (602)
Q Consensus       281 ~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~--------------~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i  345 (602)
                      ..|.....++++..+++++.+.....|+..|..              ...+.+|.+.|.+++|+| ++++|++++.|++|
T Consensus        21 ~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtI  100 (493)
T PTZ00421         21 LNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDGTI  100 (493)
T ss_pred             eccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEE
Confidence            345555566666666666666666666643321              123568999999999999 88999999999999


Q ss_pred             EEEeCCCC-------ceeEEeeeccCCeeeeeccCC--CeEEEeeCCCeEEEEEcCCCceeeEeccCCCCeEEEEECCCC
Q psy12697        346 IIWDAASG-------QCEQQFSFHSAPALDVDWQSN--TSFASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQG  416 (602)
Q Consensus       346 ~~wd~~~~-------~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~  416 (602)
                      ++||+.++       +.+..+..|...|.++.|+|.  +.+++++.|+.|++||+.+++.+..+.+|...|.+++|+|+|
T Consensus       101 kIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spdG  180 (493)
T PTZ00421        101 MGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDG  180 (493)
T ss_pred             EEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEECCC
Confidence            99999765       345677889999999999986  479999999999999999999999999999999999999999


Q ss_pred             CEEEEEECCCeEEEEeCCCCeeeEeeccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEE
Q psy12697        417 LLLASCSDDMTLKIWSLDKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYIL  496 (602)
Q Consensus       417 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~  496 (602)
                      .+|++++.|+.|++||+++++.+..+..|....                                 +..+.|.+++..++
T Consensus       181 ~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~---------------------------------~~~~~w~~~~~~iv  227 (493)
T PTZ00421        181 SLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAK---------------------------------SQRCLWAKRKDLII  227 (493)
T ss_pred             CEEEEecCCCEEEEEECCCCcEEEEEecCCCCc---------------------------------ceEEEEcCCCCeEE
Confidence            999999999999999999988887776654321                                 22345556666677


Q ss_pred             EEe----CCCeEEEEeCCCCc-eeeeeccc-CCCeeEeeecCCc-eEEEee-CCCcEEEeecCCCCceeee
Q psy12697        497 SAG----VDKTTIIWDAASGQ-CEQQFSFH-SAPALDVDWQSNT-SFASCS-TDQHIHVCKLHSDKPVKSF  559 (602)
Q Consensus       497 s~~----~dg~i~iwd~~~~~-~~~~~~~~-~~~v~~~~~s~~~-~l~~~~-~d~~i~iw~~~~~~~~~~~  559 (602)
                      +++    .|+.|++||+++.. ++.....+ ...+....|++++ .|++++ .|+.|++||+.+++++...
T Consensus       228 t~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~  298 (493)
T PTZ00421        228 TLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCS  298 (493)
T ss_pred             EEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEe
Confidence            654    47899999998754 33333333 3345666789999 777777 5999999999988766554

>KOG0640|consensus

Probab=99.97  E-value=6e-29  Score=210.30  Aligned_cols=303  Identities=18%  Similarity=0.301  Sum_probs=232.6

Q ss_pred             ceEeeCCCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCC------CccceEEEEEEecCCCcccCCCCceeEEee
Q psy12697        215 ATKLIGHESEVFICAWNPVKDFLASGSGDSTARIWDMTDSTKKD------PKELQIVLRHCISKGGTEVPSNKDVTSLDW  288 (602)
Q Consensus       215 ~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  288 (602)
                      ...+..|.+++.+.+|+|||.++++|+.|..|+|.|++..-...      ....+.  .|  ........|..+|+++.|
T Consensus       105 t~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa--~h--PvIRTlYDH~devn~l~F  180 (430)
T KOG0640|consen  105 TKYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQA--RH--PVIRTLYDHVDEVNDLDF  180 (430)
T ss_pred             eEEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCccc--CC--ceEeehhhccCcccceee
Confidence            36678899999999999999999999999999999987321110      000000  00  001133457789999999


Q ss_pred             CCCCCeEEEEeCCCeEEEEcCCCccee---ecccccCCeEEEEEccCCCEEEEEecCCcEEEEeCCCCceeEEeeeccCC
Q psy12697        289 NNNGSFLATGSYDGYARIWTSDGSLKS---TLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAP  365 (602)
Q Consensus       289 ~~~~~~l~~~~~dg~i~i~~~~~~~~~---~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~  365 (602)
                      +|....|++|+.|+.|++||......+   .......+|.++.|+|.|.+|+.|....++++||+.+.++...-.     
T Consensus       181 HPre~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~Qcfvsan-----  255 (430)
T KOG0640|consen  181 HPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSAN-----  255 (430)
T ss_pred             cchhheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecC-----
Confidence            999999999999999999997643221   122345689999999999999999999999999998876532211     


Q ss_pred             eeeeeccCCCeEEEeeCCCeEEEEEcCCCceeeEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeeeEeeccc
Q psy12697        366 ALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHDLQAH  445 (602)
Q Consensus       366 ~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~  445 (602)
                                                       .-..|.+.|+++.+++.+++.++++.||.|++||--+++|+.++...
T Consensus       256 ---------------------------------Pd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~A  302 (430)
T KOG0640|consen  256 ---------------------------------PDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNA  302 (430)
T ss_pred             ---------------------------------cccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhh
Confidence                                             01348889999999999999999999999999999898998887532


Q ss_pred             cccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeeecccCC--
Q psy12697        446 NKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSA--  523 (602)
Q Consensus       446 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~--  523 (602)
                      .                                ..+.|.+..|+.+|+|+++.+.|..+++|.+.+++++..+.+...  
T Consensus       303 H--------------------------------~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tg  350 (430)
T KOG0640|consen  303 H--------------------------------GGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYTGAGTTG  350 (430)
T ss_pred             c--------------------------------CCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEEEecCCccc
Confidence            1                                235678888999999999999999999999999999998876421  


Q ss_pred             ---CeeEeeecCCc-eEEEe-eCCCcEEEeecCCCCceeeeecccccceEEEEecCCcEEEEEECCCCCeEEEeccCCeE
Q psy12697        524 ---PALDVDWQSNT-SFASC-STDQHIHVCKLHSDKPVKSFEGHTTGQLVHSYKGTGGIFEVCWNSRGDKVGASASDGSV  598 (602)
Q Consensus       524 ---~v~~~~~s~~~-~l~~~-~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~v  598 (602)
                         --+...|+... +++.- -..+.+.-||.++...+..+.          +.+++.+..+.-||.+.-+.+|+.|-.+
T Consensus       351 rq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~s----------lgHn~a~R~i~HSP~~p~FmTcsdD~ra  420 (430)
T KOG0640|consen  351 RQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLS----------LGHNGAVRWIVHSPVEPAFMTCSDDFRA  420 (430)
T ss_pred             chhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcc----------cCCCCCceEEEeCCCCCceeeeccccee
Confidence               12345566555 44443 345778999988775554433          2235889999999999999999999988


Q ss_pred             Eee
Q psy12697        599 FKN  601 (602)
Q Consensus       599 ~i~  601 (602)
                      +.+
T Consensus       421 RFW  423 (430)
T KOG0640|consen  421 RFW  423 (430)
T ss_pred             eee
Confidence            765

>KOG0310|consensus

Probab=99.97  E-value=4.4e-29  Score=224.29  Aligned_cols=281  Identities=16%  Similarity=0.278  Sum_probs=228.5

Q ss_pred             CCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEeeCCCCCeEEEEeC
Q psy12697        221 HESEVFICAWNPVKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFLATGSY  300 (602)
Q Consensus       221 h~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~  300 (602)
                      ..+.|.+++|+|...+=++.+..-.+.+|+..+........                .....+.+++|..||+++++|..
T Consensus        25 e~~~vssl~fsp~~P~d~aVt~S~rvqly~~~~~~~~k~~s----------------rFk~~v~s~~fR~DG~LlaaGD~   88 (487)
T KOG0310|consen   25 EHNSVSSLCFSPKHPYDFAVTSSVRVQLYSSVTRSVRKTFS----------------RFKDVVYSVDFRSDGRLLAAGDE   88 (487)
T ss_pred             ccCcceeEecCCCCCCceEEecccEEEEEecchhhhhhhHH----------------hhccceeEEEeecCCeEEEccCC
Confidence            45789999999977543333334578899877654432111                11467999999999999999999


Q ss_pred             CCeEEEEcCCC-cceeecccccCCeEEEEEccCCC-EEEEEecCCcEEEEeCCCCceeEEeeeccCCeeeeeccCCC--e
Q psy12697        301 DGYARIWTSDG-SLKSTLGQHKGPIFALKWNKRGN-YILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNT--S  376 (602)
Q Consensus       301 dg~i~i~~~~~-~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~--~  376 (602)
                      .|.|++||.+. ..+..+..|..++..+.|+|+++ .+++|+.|+.+++||+.+......+..|...+.+.+|+|.+  .
T Consensus        89 sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hi  168 (487)
T KOG0310|consen   89 SGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHI  168 (487)
T ss_pred             cCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeE
Confidence            99999999654 35567889999999999999765 56678888999999999998766889999999999999864  5


Q ss_pred             EEEeeCCCeEEEEEcCCC-ceeeEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeeeEeeccccccEEEEEEC
Q psy12697        377 FASCSTDQHIHVCKLHSD-KPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHDLQAHNKEIYTIKWS  455 (602)
Q Consensus       377 ~~~~~~~~~i~i~d~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~  455 (602)
                      +++|+.||.|++||.+.. ..+.++. |..+|..+.+-|.|..+|+++. ..|++||+-+|........           
T Consensus       169 vvtGsYDg~vrl~DtR~~~~~v~eln-hg~pVe~vl~lpsgs~iasAgG-n~vkVWDl~~G~qll~~~~-----------  235 (487)
T KOG0310|consen  169 VVTGSYDGKVRLWDTRSLTSRVVELN-HGCPVESVLALPSGSLIASAGG-NSVKVWDLTTGGQLLTSMF-----------  235 (487)
T ss_pred             EEecCCCceEEEEEeccCCceeEEec-CCCceeeEEEcCCCCEEEEcCC-CeEEEEEecCCceehhhhh-----------
Confidence            999999999999999987 5666665 9999999999999999999976 4799999986654433222           


Q ss_pred             CCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeeecccCCCeeEeeecCCc-
Q psy12697        456 PTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNT-  534 (602)
Q Consensus       456 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~-  534 (602)
                                            .|...|+|+++..++..|++++.|+.|++||+.+.+.+..+. ..++|.+++.+|++ 
T Consensus       236 ----------------------~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~-~~~pvLsiavs~dd~  292 (487)
T KOG0310|consen  236 ----------------------NHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWK-YPGPVLSIAVSPDDQ  292 (487)
T ss_pred             ----------------------cccceEEEEEeecCCceEeecccccceEEEEccceEEEEeee-cccceeeEEecCCCc
Confidence                                  255566666666688899999999999999999999998887 67899999999999 


Q ss_pred             eEEEeeCCCcEEEeecCCC
Q psy12697        535 SFASCSTDQHIHVCKLHSD  553 (602)
Q Consensus       535 ~l~~~~~d~~i~iw~~~~~  553 (602)
                      .++.|..+|.+.+-+...+
T Consensus       293 t~viGmsnGlv~~rr~~~k  311 (487)
T KOG0310|consen  293 TVVIGMSNGLVSIRRREVK  311 (487)
T ss_pred             eEEEecccceeeeehhhcc
Confidence            9999999999888755443

>KOG0274|consensus

Probab=99.97  E-value=8.2e-29  Score=241.60  Aligned_cols=269  Identities=26%  Similarity=0.454  Sum_probs=235.1

Q ss_pred             CCceeEEeeCCCCCeEEEEeCCCeEEEEcCC-Ccceee-cccccCCeEEEEEccCCCEEEEEecCCcEEEEeCCCCceeE
Q psy12697        280 NKDVTSLDWNNNGSFLATGSYDGYARIWTSD-GSLKST-LGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQ  357 (602)
Q Consensus       280 ~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~-~~~~~~-~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~  357 (602)
                      ...+.+..|.  ..++++++.++.|++|+.. +..+.. +.+|.+.|.++++..-+..|++|+.|.++++||..++++..
T Consensus       208 ~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~  285 (537)
T KOG0274|consen  208 DHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTH  285 (537)
T ss_pred             cchhhhheee--cCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEE
Confidence            5667888888  5589999999999999965 666666 89999999999998878899999999999999999999999


Q ss_pred             EeeeccCCeeeeeccCCCeEEEeeCCCeEEEEEcCCCceeeEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCe
Q psy12697        358 QFSFHSAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDN  437 (602)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~  437 (602)
                      .+.+|...+.++... ...+++|+.|.+|++|++.+++.+..+.+|.++|.++..+  +.++++|+.|++|++||+.+++
T Consensus       286 ~l~gh~stv~~~~~~-~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~  362 (537)
T KOG0274|consen  286 SLQGHTSSVRCLTID-PFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTGK  362 (537)
T ss_pred             EecCCCceEEEEEcc-CceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec--CCEEEEEecCceEEEEEhhhce
Confidence            999999999888754 3456678999999999999999999999999999999998  7799999999999999999999


Q ss_pred             eeEeeccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCC-ceee
Q psy12697        438 CVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASG-QCEQ  516 (602)
Q Consensus       438 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~~~~-~~~~  516 (602)
                      ++.++.+|...|+++.+.+                                  . .++++|+.|+.|++||+++. +++.
T Consensus       363 cl~sl~gH~~~V~sl~~~~----------------------------------~-~~~~Sgs~D~~IkvWdl~~~~~c~~  407 (537)
T KOG0274|consen  363 CLKSLSGHTGRVYSLIVDS----------------------------------E-NRLLSGSLDTTIKVWDLRTKRKCIH  407 (537)
T ss_pred             eeeeecCCcceEEEEEecC----------------------------------c-ceEEeeeeccceEeecCCchhhhhh
Confidence            9999998887777776533                                  2 67999999999999999999 9999


Q ss_pred             eecccCCCeeEeeecCCceEEEeeCCCcEEEeecCCCCceeeeecccccceEEEEecCCcEEEEEECCCCCeEEEeccCC
Q psy12697        517 QFSFHSAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEGHTTGQLVHSYKGTGGIFEVCWNSRGDKVGASASDG  596 (602)
Q Consensus       517 ~~~~~~~~v~~~~~s~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg  596 (602)
                      ++.+|.+-+..+.+... .|++++.|+.|++||..++++++.+.++.          .+.|..+++.  ...+++++.||
T Consensus       408 tl~~h~~~v~~l~~~~~-~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~----------~~~v~~l~~~--~~~il~s~~~~  474 (537)
T KOG0274|consen  408 TLQGHTSLVSSLLLRDN-FLVSSSADGTIKLWDAEEGECLRTLEGRH----------VGGVSALALG--KEEILCSSDDG  474 (537)
T ss_pred             hhcCCcccccccccccc-eeEeccccccEEEeecccCceeeeeccCC----------cccEEEeecC--cceEEEEecCC
Confidence            99999998877666433 89999999999999999998888887731          2668888876  56788999999


Q ss_pred             eEEee
Q psy12697        597 SVFKN  601 (602)
Q Consensus       597 ~v~i~  601 (602)
                      ++.+.
T Consensus       475 ~~~l~  479 (537)
T KOG0274|consen  475 SVKLW  479 (537)
T ss_pred             eeEEE
Confidence            98863

>KOG0299|consensus

Probab=99.97  E-value=1e-28  Score=220.26  Aligned_cols=304  Identities=23%  Similarity=0.325  Sum_probs=238.5

Q ss_pred             eeeeeccCCceEEEEECCCCCeEEEeeCCceEEEEecCCceeEEEeeccCceEEEEeCCCCCCCCCCCCccccccccccC
Q psy12697        133 LNTLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKGTGGIFEVCWNSRGTPPNPPESMEVDASIEIPQ  212 (602)
Q Consensus       133 ~~~l~~h~~~V~~~~~s~d~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  212 (602)
                      ...+..|.-+|+|++++||+++.++++.|++|.=|++.+|+....+-....+...                    -..+.
T Consensus       135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~--------------------~~~~~  194 (479)
T KOG0299|consen  135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKS--------------------HGNPL  194 (479)
T ss_pred             ceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhh--------------------ccCCC
Confidence            6677889999999999999999999999999999999999866322110000000                    00011


Q ss_pred             CcceEeeCCCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEeeCCCC
Q psy12697        213 SKATKLIGHESEVFICAWNPVKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNG  292 (602)
Q Consensus       213 ~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  292 (602)
                      . ... .+|...+.+++.++|++||++|+.|..|.||+.++.+....                ...|.+.|.+++|-...
T Consensus       195 k-~~r-~~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~----------------~~ghr~~V~~L~fr~gt  256 (479)
T KOG0299|consen  195 K-ESR-KGHVKEILTLAVSSDGKYLATGGRDRHVQIWDCDTLEHVKV----------------FKGHRGAVSSLAFRKGT  256 (479)
T ss_pred             C-ccc-ccccceeEEEEEcCCCcEEEecCCCceEEEecCcccchhhc----------------ccccccceeeeeeecCc
Confidence            1 111 48999999999999999999999999999999998775432                23457899999999988


Q ss_pred             CeEEEEeCCCeEEEEcCC-CcceeecccccCCeEEEEEccCCCEEEEEecCCcEEEEeCCCCceeEEeeeccCCeeeeec
Q psy12697        293 SFLATGSYDGYARIWTSD-GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDW  371 (602)
Q Consensus       293 ~~l~~~~~dg~i~i~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~  371 (602)
                      ..+++++.|+.+++|+++ ...+.++.+|+..|..+....-++.+-+|+.|+++++|++. .+....+..+...+-+++|
T Consensus       257 ~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~-eesqlifrg~~~sidcv~~  335 (479)
T KOG0299|consen  257 SELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIP-EESQLIFRGGEGSIDCVAF  335 (479)
T ss_pred             cceeeeecCCceEEEehhHhHHHHHHhCCccceeeechhcccceEEeccccceeEEEecc-ccceeeeeCCCCCeeeEEE
Confidence            899999999999999987 56677889999999999998888877778899999999994 3444556778889999999


Q ss_pred             cCCCeEEEeeCCCeEEEEEcCCCceeeEecc-C-----------CCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCee-
Q psy12697        372 QSNTSFASCSTDQHIHVCKLHSDKPVKSFEG-H-----------TNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNC-  438 (602)
Q Consensus       372 ~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~-~-----------~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-  438 (602)
                      -.+..|++|+.+|.|.+|++...+++.+... |           ...|++++..|...++|+|+.+|.|++|-+..+-. 
T Consensus       336 In~~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~  415 (479)
T KOG0299|consen  336 INDEHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRA  415 (479)
T ss_pred             ecccceeeccCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccc
Confidence            9999999999999999999999988876542 1           23799999999999999999999999999877621 


Q ss_pred             eEeeccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEE-eCCCeEEEE
Q psy12697        439 VHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSA-GVDKTTIIW  507 (602)
Q Consensus       439 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~~dg~i~iw  507 (602)
                      +.-+       ..+.                         -.+.|++++|+++|+++++| +....+--|
T Consensus       416 i~~l-------~~ls-------------------------~~GfVNsl~f~~sgk~ivagiGkEhRlGRW  453 (479)
T KOG0299|consen  416 INLL-------YSLS-------------------------LVGFVNSLAFSNSGKRIVAGIGKEHRLGRW  453 (479)
T ss_pred             ccee-------eecc-------------------------cccEEEEEEEccCCCEEEEeccccccccee
Confidence            1111       1111                         34678888888899865554 444444444

>KOG2048|consensus

Probab=99.97  E-value=7.3e-27  Score=218.29  Aligned_cols=428  Identities=16%  Similarity=0.227  Sum_probs=300.4

Q ss_pred             ccceeeeecccceeeeeeeccCCceEEEEECCCCCeEEEeeCCceEEEEecCCceeEEEeeccCceEEEEeCCCCCCCCC
Q psy12697        119 RLTLPLWDVERGECLNTLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKGTGGIFEVCWNSRGTPPNP  198 (602)
Q Consensus       119 ~~~i~vwd~~~~~~~~~l~~h~~~V~~~~~s~d~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (602)
                      .++|.-||+.+++.+..+....+.|++++.+|.++.++.|+.||.+...+...++....                     
T Consensus        89 sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~---------------------  147 (691)
T KOG2048|consen   89 SGSITEWDLHTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYK---------------------  147 (691)
T ss_pred             CceEEEEecccCceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEE---------------------
Confidence            57899999999999999999999999999999999999999999888887777665543                     


Q ss_pred             CCCccccccccccCCcceEeeCCCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccC
Q psy12697        199 PESMEVDASIEIPQSKATKLIGHESEVFICAWNPVKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVP  278 (602)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (602)
                                       ..+...++.|.+++|+|++..+++|+.||.|++||...+........        ...+....
T Consensus       148 -----------------r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~--------~~d~l~k~  202 (691)
T KOG2048|consen  148 -----------------RSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITM--------QLDRLSKR  202 (691)
T ss_pred             -----------------eecccccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeee--------cccccccC
Confidence                             34445678999999999999999999999999999988765431110        00111111


Q ss_pred             CCCceeEEeeCCCCCeEEEEeCCCeEEEEcCC-CcceeecccccCCeEEEEEccCCCEEEEEecCCcEEEEeCCCCce--
Q psy12697        279 SNKDVTSLDWNNNGSFLATGSYDGYARIWTSD-GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQC--  355 (602)
Q Consensus       279 ~~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~--  355 (602)
                      ...-|.++.|-.++ .|++|...|.|.+||.. +.+......|.+.|.+++..++++++++++.|+.+..+...++..  
T Consensus       203 ~~~iVWSv~~Lrd~-tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~w  281 (691)
T KOG2048|consen  203 EPTIVWSVLFLRDS-TIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSEW  281 (691)
T ss_pred             CceEEEEEEEeecC-cEEEecCCceEEEEcccCcchhhhhhhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCccce
Confidence            23447778777555 69999999999999965 788889999999999999999999999999999999998776643  


Q ss_pred             --eEEeeeccCCeeeeeccCCCeEEEeeCCCeEEEEEcCCCceeeEeccCCC-Ce-EEEEECCCCCEEEEEECCCeEEEE
Q psy12697        356 --EQQFSFHSAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEGHTN-EV-NAIKWDPQGLLLASCSDDMTLKIW  431 (602)
Q Consensus       356 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~-~i-~~~~~~~~~~~l~~~~~dg~i~iw  431 (602)
                        ......|...+.+++..++ .+++|+.|..+.+...+..+...... +.. +- ..+...|.. +|..--.+..+.+|
T Consensus       282 v~~~~r~~h~hdvrs~av~~~-~l~sgG~d~~l~i~~s~~~~~~~h~~-~~~~p~~~~v~~a~~~-~L~~~w~~h~v~lw  358 (691)
T KOG2048|consen  282 VINSRRDLHAHDVRSMAVIEN-ALISGGRDFTLAICSSREFKNMDHRQ-KNLFPASDRVSVAPEN-RLLVLWKAHGVDLW  358 (691)
T ss_pred             eeeccccCCcccceeeeeecc-eEEecceeeEEEEccccccCchhhhc-cccccccceeecCccc-eEEEEeccccccce
Confidence              2234567788888888777 88899999999988766522111000 000 00 112233333 33333345567777


Q ss_pred             eCCCCe---------eeEeeccccccEEEEEECCCCCCCCCCCcceeee-------------------------------
Q psy12697        432 SLDKDN---------CVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFI-------------------------------  471 (602)
Q Consensus       432 d~~~~~---------~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-------------------------------  471 (602)
                      .+.+..         ..+-.......|.+.+.+|++..++.........                               
T Consensus       359 rlGS~~~~g~~~~~~Llkl~~k~~~nIs~~aiSPdg~~Ia~st~~~~~iy~L~~~~~vk~~~v~~~~~~~~~a~~i~fti  438 (691)
T KOG2048|consen  359 RLGSVILQGEYNYIHLLKLFTKEKENISCAAISPDGNLIAISTVSRTKIYRLQPDPNVKVINVDDVPLALLDASAISFTI  438 (691)
T ss_pred             eccCcccccccChhhheeeecCCccceeeeccCCCCCEEEEeeccceEEEEeccCcceeEEEeccchhhhccceeeEEEe
Confidence            765541         1222234456788888888887654433111000                               


Q ss_pred             -------ee----------e-----------ccCCccCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeeecccCC
Q psy12697        472 -------LK----------S-----------TLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSA  523 (602)
Q Consensus       472 -------~~----------~-----------~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~  523 (602)
                             ..          .           ........|..+..||+|+|||+.+.+|.|.+|++++++.......-..
T Consensus       439 d~~k~~~~s~~~~~le~~el~~ps~kel~~~~~~~~~~~I~~l~~SsdG~yiaa~~t~g~I~v~nl~~~~~~~l~~rln~  518 (691)
T KOG2048|consen  439 DKNKLFLVSKNIFSLEEFELETPSFKELKSIQSQAKCPSISRLVVSSDGNYIAAISTRGQIFVYNLETLESHLLKVRLNI  518 (691)
T ss_pred             cCceEEEEecccceeEEEEecCcchhhhhccccccCCCcceeEEEcCCCCEEEEEeccceEEEEEcccceeecchhccCc
Confidence                   00          0           0112456789999999999999999999999999998876655544558


Q ss_pred             CeeEeeecCCc--eEEEeeCCCcEEEeecCCCCceeeeecccccceEEEE-ecCCcEEEEEECCCCCeEEEeccCCe
Q psy12697        524 PALDVDWQSNT--SFASCSTDQHIHVCKLHSDKPVKSFEGHTTGQLVHSY-KGTGGIFEVCWNSRGDKVGASASDGS  597 (602)
Q Consensus       524 ~v~~~~~s~~~--~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~l~~spdg~~l~~~~~dg~  597 (602)
                      .++.++++|..  .++.+..++++.-||++..+ +..+....+..+...+ ....++..+.|+|..+..+...+.+-
T Consensus       519 ~vTa~~~~~~~~~~lvvats~nQv~efdi~~~~-l~~ws~~nt~nlpk~~~~l~~~~~gisfd~~n~s~~~~~~a~w  594 (691)
T KOG2048|consen  519 DVTAAAFSPFVRNRLVVATSNNQVFEFDIEARN-LTRWSKNNTRNLPKEPKTLIPGIPGISFDPKNSSRFIVYDAHW  594 (691)
T ss_pred             ceeeeeccccccCcEEEEecCCeEEEEecchhh-hhhhhhccccccccChhhcCCCCceEEeCCCCccEEEEEcCcE
Confidence            89999999765  89999999999999995443 2222222221111111 11456778888877665444444433

>KOG2096|consensus

Probab=99.97  E-value=1.8e-28  Score=208.20  Aligned_cols=315  Identities=18%  Similarity=0.283  Sum_probs=224.4

Q ss_pred             eeeeeccCCceEEEEECCCCCeEEEeeCCceEEEEecCCceeEEEeeccCceEEEEeCCCCCCCCCCCCccccccccccC
Q psy12697        133 LNTLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKGTGGIFEVCWNSRGTPPNPPESMEVDASIEIPQ  212 (602)
Q Consensus       133 ~~~l~~h~~~V~~~~~s~d~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  212 (602)
                      +..|++|.+.|++++||.||++|||++.|++|+||++++.....    +.-                             
T Consensus        79 ~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~e----Hr~-----------------------------  125 (420)
T KOG2096|consen   79 VSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKE----HRC-----------------------------  125 (420)
T ss_pred             hhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhh----hhH-----------------------------
Confidence            45689999999999999999999999999999999998633210    000                             


Q ss_pred             CcceEeeCCCcceEEEEEcCCCC-EEEEeeCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEeeCCC
Q psy12697        213 SKATKLIGHESEVFICAWNPVKD-FLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNN  291 (602)
Q Consensus       213 ~~~~~l~~h~~~v~~~~~~~~~~-~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  291 (602)
                         ....-.-+..+.+.|.||-+ .++++-...++++|.+...+... .......   ......+..|.-.+..+-....
T Consensus       126 ---~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~vyk~~K~~dG~-~~~~~v~---~D~~~f~~kh~v~~i~iGiA~~  198 (420)
T KOG2096|consen  126 ---IRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLCVYKLVKKTDGS-GSHHFVH---IDNLEFERKHQVDIINIGIAGN  198 (420)
T ss_pred             ---hhccccCCCceEEEECCCcceEEEEEccCCEEEEEEeeecccCC-CCccccc---ccccccchhcccceEEEeecCC
Confidence               00000122456789999975 45555667789999876443311 1110000   0001122234566777888889


Q ss_pred             CCeEEEEeCCCeEEEEcCCCcceeecccccCCeEEEEEccCCCEEEEEecCCcEEEEeCCCCceeEEeeeccCCeeeeec
Q psy12697        292 GSFLATGSYDGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDW  371 (602)
Q Consensus       292 ~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~  371 (602)
                      +.+|++++.|..|.+|++.|+.+..+......-...+.||+|+++++++..-.|++|.+--+                  
T Consensus       199 ~k~imsas~dt~i~lw~lkGq~L~~idtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~------------------  260 (420)
T KOG2096|consen  199 AKYIMSASLDTKICLWDLKGQLLQSIDTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFT------------------  260 (420)
T ss_pred             ceEEEEecCCCcEEEEecCCceeeeeccccccccceeeCCCCcEEEEecCCCCceEEEEEec------------------
Confidence            99999999999999999999999998888888888999999999999999889999975311                  


Q ss_pred             cCCCeEEEeeCCCeEEEEEcCCCceeeEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCee----eEeeccccc
Q psy12697        372 QSNTSFASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNC----VHDLQAHNK  447 (602)
Q Consensus       372 ~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~----~~~~~~~~~  447 (602)
                                .||++     ..-+.+..+++|...|..++|+|+...+++.+.||+++|||.+-.-.    ...++... 
T Consensus       261 ----------kdG~f-----qev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~-  324 (420)
T KOG2096|consen  261 ----------KDGTF-----QEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGS-  324 (420)
T ss_pred             ----------cCcch-----hhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCchHhhcCC-
Confidence                      12211     12234677899999999999999999999999999999999763211    01111000 


Q ss_pred             cEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeeec-ccCCCee
Q psy12697        448 EIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFS-FHSAPAL  526 (602)
Q Consensus       448 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~  526 (602)
                                                ..+....+.-..+.++|+|+.||.+. ...+.++..++|+...++. .|...|.
T Consensus       325 --------------------------~pl~aag~~p~RL~lsP~g~~lA~s~-gs~l~~~~se~g~~~~~~e~~h~~~Is  377 (420)
T KOG2096|consen  325 --------------------------APLHAAGSEPVRLELSPSGDSLAVSF-GSDLKVFASEDGKDYPELEDIHSTTIS  377 (420)
T ss_pred             --------------------------cchhhcCCCceEEEeCCCCcEEEeec-CCceEEEEcccCccchhHHHhhcCcee
Confidence                                      01112223334889999999888764 4569999999998876665 4899999


Q ss_pred             EeeecCCc-eEEEeeCCCcEEEee
Q psy12697        527 DVDWQSNT-SFASCSTDQHIHVCK  549 (602)
Q Consensus       527 ~~~~s~~~-~l~~~~~d~~i~iw~  549 (602)
                      +++|+++| ++++++ |..+++..
T Consensus       378 ~is~~~~g~~~atcG-dr~vrv~~  400 (420)
T KOG2096|consen  378 SISYSSDGKYIATCG-DRYVRVIR  400 (420)
T ss_pred             eEEecCCCcEEeeec-ceeeeeec
Confidence            99999999 666655 67788776

>KOG0641|consensus

Probab=99.97  E-value=2.5e-27  Score=191.44  Aligned_cols=283  Identities=22%  Similarity=0.391  Sum_probs=228.7

Q ss_pred             CCceeEEeeCCCCCeEEEEeCCCeEEEEcCC-------C---------cceeecccccCCeEEEEEccCCCEEEEEecCC
Q psy12697        280 NKDVTSLDWNNNGSFLATGSYDGYARIWTSD-------G---------SLKSTLGQHKGPIFALKWNKRGNYILSAGVDK  343 (602)
Q Consensus       280 ~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~-------~---------~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg  343 (602)
                      ...|.+++|+|.|.+.++|+...++++....       +         -..+.-+.|.+.|.|.+|+|+|+.|++|+.|.
T Consensus        32 sqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatgsndk  111 (350)
T KOG0641|consen   32 SQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGSNDK  111 (350)
T ss_pred             hhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEecCCCc
Confidence            4679999999999999999999998887421       0         12234457899999999999999999999999


Q ss_pred             cEEEEeCCCCce-----eEEeeeccCCeeeeeccCC----Ce-EEEe-eCCCeEEEEEcCCCceeeEeccCCCCeEEEEE
Q psy12697        344 TTIIWDAASGQC-----EQQFSFHSAPALDVDWQSN----TS-FASC-STDQHIHVCKLHSDKPVKSFEGHTNEVNAIKW  412 (602)
Q Consensus       344 ~i~~wd~~~~~~-----~~~~~~~~~~~~~~~~~~~----~~-~~~~-~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~  412 (602)
                      +|++.......+     ...+..|.+.+.+++|..+    +. ++++ ..|..|++-|...++....+.+|.+-|.++ +
T Consensus       112 ~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sghtghilal-y  190 (350)
T KOG0641|consen  112 TIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGHTGHILAL-Y  190 (350)
T ss_pred             eEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecCCcccEEEE-E
Confidence            999976554333     2356778999999999764    23 4443 357789999999999999999999999876 4


Q ss_pred             CCCCCEEEEEECCCeEEEEeCCCCeeeEeeccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCC
Q psy12697        413 DPQGLLLASCSDDMTLKIWSLDKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRG  492 (602)
Q Consensus       413 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~  492 (602)
                      +-++-++++|+.|.+|++||++-..++.++.....        .                   -.-..+.|.+++..|.|
T Consensus       191 swn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~--------~-------------------~glessavaav~vdpsg  243 (350)
T KOG0641|consen  191 SWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFH--------D-------------------GGLESSAVAAVAVDPSG  243 (350)
T ss_pred             EecCcEEEccCCCceEEEEeeeccceeeeccCccc--------C-------------------CCcccceeEEEEECCCc
Confidence            45688999999999999999998877776642110        0                   01134678899999999


Q ss_pred             CEEEEEeCCCeEEEEeCCCCceeeeecccCCCeeEeeecCCc-eEEEeeCCCcEEEeecCCCC----ceeeeecccccce
Q psy12697        493 NYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNT-SFASCSTDQHIHVCKLHSDK----PVKSFEGHTTGQL  567 (602)
Q Consensus       493 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~-~l~~~~~d~~i~iw~~~~~~----~~~~~~~~~~~~~  567 (602)
                      ++|++|-.|....+||++.++.++.+..|...|.++.|||.. ++++|+.|..|++-|+...-    ++.....      
T Consensus       244 rll~sg~~dssc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~e------  317 (350)
T KOG0641|consen  244 RLLASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAE------  317 (350)
T ss_pred             ceeeeccCCCceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEe------
Confidence            999999999999999999999999999999999999999999 99999999999999986531    1122222      


Q ss_pred             EEEEecCCcEEEEEECCCCCeEEEeccCCeEEee
Q psy12697        568 VHSYKGTGGIFEVCWNSRGDKVGASASDGSVFKN  601 (602)
Q Consensus       568 ~~~~~~~~~i~~l~~spdg~~l~~~~~dg~v~i~  601 (602)
                           +...+..+.|.|..--+++.+.|.++.++
T Consensus       318 -----hkdk~i~~rwh~~d~sfisssadkt~tlw  346 (350)
T KOG0641|consen  318 -----HKDKAIQCRWHPQDFSFISSSADKTATLW  346 (350)
T ss_pred             -----ccCceEEEEecCccceeeeccCcceEEEe
Confidence                 23667788999999889999999988765

>KOG0305|consensus

Probab=99.97  E-value=1.2e-28  Score=230.68  Aligned_cols=273  Identities=22%  Similarity=0.404  Sum_probs=227.6

Q ss_pred             EEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEeeCCCCCeEEEEeCCCeEE
Q psy12697        226 FICAWNPVKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFLATGSYDGYAR  305 (602)
Q Consensus       226 ~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~  305 (602)
                      .-+.|+. .+.|+.+. ...|.+|+-.++........                +...|+++.|+++|.+|++|..+|.|.
T Consensus       181 nlldWss-~n~laVal-g~~vylW~~~s~~v~~l~~~----------------~~~~vtSv~ws~~G~~LavG~~~g~v~  242 (484)
T KOG0305|consen  181 NLLDWSS-ANVLAVAL-GQSVYLWSASSGSVTELCSF----------------GEELVTSVKWSPDGSHLAVGTSDGTVQ  242 (484)
T ss_pred             hHhhccc-CCeEEEEe-cceEEEEecCCCceEEeEec----------------CCCceEEEEECCCCCEEEEeecCCeEE
Confidence            3467773 44555554 45799999887763211100                147899999999999999999999999


Q ss_pred             EEcCC-Ccceeeccc-ccCCeEEEEEccCCCEEEEEecCCcEEEEeCCCCceeEE-eeeccCCeeeeeccCC-CeEEEee
Q psy12697        306 IWTSD-GSLKSTLGQ-HKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQ-FSFHSAPALDVDWQSN-TSFASCS  381 (602)
Q Consensus       306 i~~~~-~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~  381 (602)
                      |||.. .+....+.. |...|.+++|.  +..+.+|+.|+.|..+|++..+.... +..|...|..+.|+++ ..+++|+
T Consensus       243 iwD~~~~k~~~~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGg  320 (484)
T KOG0305|consen  243 IWDVKEQKKTRTLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGG  320 (484)
T ss_pred             EEehhhccccccccCCcCceeEEEecc--CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCC
Confidence            99976 455556666 99999999998  56899999999999999998876665 8889999999999998 4589999


Q ss_pred             CCCeEEEEEcCCCceeeEeccCCCCeEEEEECC-CCCEEEEEE--CCCeEEEEeCCCCeeeEeeccccccEEEEEECCCC
Q psy12697        382 TDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDP-QGLLLASCS--DDMTLKIWSLDKDNCVHDLQAHNKEIYTIKWSPTG  458 (602)
Q Consensus       382 ~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~  458 (602)
                      .|+.+.|||.....+...+..|...|.+++|+| ...+||+|+  .|+.|++||..++..+..+..              
T Consensus       321 nDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdt--------------  386 (484)
T KOG0305|consen  321 NDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDT--------------  386 (484)
T ss_pred             CccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEeccccc--------------
Confidence            999999999999999999999999999999999 667888875  589999999999888776643              


Q ss_pred             CCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEE--eCCCeEEEEeCCCCceeeeecccCCCeeEeeecCCc-e
Q psy12697        459 PETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSA--GVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNT-S  535 (602)
Q Consensus       459 ~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~--~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~-~  535 (602)
                                           .+.|..+.|++..+-|+++  ..+..|.||+..+.+.+..+.+|...|..++++||| .
T Consensus       387 ---------------------gsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~  445 (484)
T KOG0305|consen  387 ---------------------GSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHTSRVLYLALSPDGET  445 (484)
T ss_pred             ---------------------CCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCcceeEEEEECCCCCE
Confidence                                 3456667777766556553  456789999999999999999999999999999999 9


Q ss_pred             EEEeeCCCcEEEeecCCC
Q psy12697        536 FASCSTDQHIHVCKLHSD  553 (602)
Q Consensus       536 l~~~~~d~~i~iw~~~~~  553 (602)
                      +++|+.|.++++|++-+.
T Consensus       446 i~t~a~DETlrfw~~f~~  463 (484)
T KOG0305|consen  446 IVTGAADETLRFWNLFDE  463 (484)
T ss_pred             EEEecccCcEEeccccCC
Confidence            999999999999998664

>KOG0301|consensus

Probab=99.97  E-value=1.6e-28  Score=229.79  Aligned_cols=279  Identities=22%  Similarity=0.372  Sum_probs=234.3

Q ss_pred             eEeeCCCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeE-EeeCC-CCC
Q psy12697        216 TKLIGHESEVFICAWNPVKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTS-LDWNN-NGS  293 (602)
Q Consensus       216 ~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~-~~~  293 (602)
                      ..+.||...|..++..+. ..++++++||++++|+-...+.......              ..+.+-|.+ +++.+ ++-
T Consensus         8 ~~l~gH~~DVr~v~~~~~-~~i~s~sRd~t~~vw~~~~~~~l~~~~~--------------~~~~g~i~~~i~y~e~~~~   72 (745)
T KOG0301|consen    8 HELEGHKSDVRAVAVTDG-VCIISGSRDGTVKVWAKKGKQYLETHAF--------------EGPKGFIANSICYAESDKG   72 (745)
T ss_pred             EEeccCccchheeEecCC-eEEeecCCCCceeeeeccCcccccceec--------------ccCcceeeccceeccccCc
Confidence            678899999999987754 4799999999999999765544321111              112233444 66665 455


Q ss_pred             eEEEEeCCCeEEEEcCC-CcceeecccccCCeEEEEEccCCCEEEEEecCCcEEEEeCCCCceeEEeeeccCCeeeeecc
Q psy12697        294 FLATGSYDGYARIWTSD-GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQ  372 (602)
Q Consensus       294 ~l~~~~~dg~i~i~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~  372 (602)
                      .+++|+.|+.+.+|... ......+.+|...|.++....++. +++|+.|.++++|..  +++...+.+|...|..+...
T Consensus        73 ~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~--~~l~~~l~gH~asVWAv~~l  149 (745)
T KOG0301|consen   73 RLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRI--GELVYSLQGHTASVWAVASL  149 (745)
T ss_pred             ceEeecccceEEEEecCCCCchhhhhccccceeeeecCCcCc-eEecccccceEEecc--hhhhcccCCcchheeeeeec
Confidence            69999999999999976 567889999999999999888877 999999999999965  56667799999999999999


Q ss_pred             CCCeEEEeeCCCeEEEEEcCCCceeeEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeeeEeeccccccEEEE
Q psy12697        373 SNTSFASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHDLQAHNKEIYTI  452 (602)
Q Consensus       373 ~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~  452 (602)
                      |++.+++|+.|..|++|.-  ++.++++.+|.+.|+.+++-+++ .+++++.||.|++|++ +++++.++.+|...++++
T Consensus       150 ~e~~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~-~flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsi  225 (745)
T KOG0301|consen  150 PENTYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDS-HFLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSI  225 (745)
T ss_pred             CCCcEEeccCcceeeeccC--CchhhhhccchhheeeeEEecCC-CeEeecCCceEEEEec-cCceeeeeeccceEEEEE
Confidence            9999999999999999986  77889999999999999999875 5789999999999998 788998888887777777


Q ss_pred             EECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeeecccCCCeeEeeecC
Q psy12697        453 KWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQS  532 (602)
Q Consensus       453 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~  532 (602)
                      ....                                  ++..++++++|++++||+..  ++.+.+......|+++.+-+
T Consensus       226 s~~~----------------------------------~~~~Ivs~gEDrtlriW~~~--e~~q~I~lPttsiWsa~~L~  269 (745)
T KOG0301|consen  226 SMAL----------------------------------SDGLIVSTGEDRTLRIWKKD--ECVQVITLPTTSIWSAKVLL  269 (745)
T ss_pred             EecC----------------------------------CCCeEEEecCCceEEEeecC--ceEEEEecCccceEEEEEee
Confidence            6433                                  55679999999999999976  88888886666899999999


Q ss_pred             CceEEEeeCCCcEEEeecCC
Q psy12697        533 NTSFASCSTDQHIHVCKLHS  552 (602)
Q Consensus       533 ~~~l~~~~~d~~i~iw~~~~  552 (602)
                      +|.+++|++||.||||..+.
T Consensus       270 NgDIvvg~SDG~VrVfT~~k  289 (745)
T KOG0301|consen  270 NGDIVVGGSDGRVRVFTVDK  289 (745)
T ss_pred             CCCEEEeccCceEEEEEecc
Confidence            99999999999999998873

>KOG0268|consensus

Probab=99.97  E-value=9.5e-30  Score=219.71  Aligned_cols=290  Identities=19%  Similarity=0.311  Sum_probs=235.0

Q ss_pred             CCcceEeeCCCcceEEEEEcCCC-CEEEEeeCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEeeCC
Q psy12697        212 QSKATKLIGHESEVFICAWNPVK-DFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNN  290 (602)
Q Consensus       212 ~~~~~~l~~h~~~v~~~~~~~~~-~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  290 (602)
                      ...+..|.||...|.+++=+|.. ..+++|+.||.|++||+....+....                ..|.+.|..+++..
T Consensus        56 kPFv~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f----------------~AH~G~V~Gi~v~~  119 (433)
T KOG0268|consen   56 KPFVGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTF----------------KAHEGLVRGICVTQ  119 (433)
T ss_pred             ccchhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhhee----------------ecccCceeeEEecc
Confidence            34456778999999999999987 88999999999999999876654322                23578899999987


Q ss_pred             CCCeEEEEeCCCeEEEEcCCCcceeecccccCCeEEEEEccCCCEEEEEecCCcEEEEeCCCCceeEEeeeccCCeeeee
Q psy12697        291 NGSFLATGSYDGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVD  370 (602)
Q Consensus       291 ~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~  370 (602)
                        ..+++++.|.+|+.|..++....++.+ ...+..+.-+..++.++++|.  .|.|||.+...++..+.-....+.++.
T Consensus       120 --~~~~tvgdDKtvK~wk~~~~p~~tilg-~s~~~gIdh~~~~~~FaTcGe--~i~IWD~~R~~Pv~smswG~Dti~svk  194 (433)
T KOG0268|consen  120 --TSFFTVGDDKTVKQWKIDGPPLHTILG-KSVYLGIDHHRKNSVFATCGE--QIDIWDEQRDNPVSSMSWGADSISSVK  194 (433)
T ss_pred             --cceEEecCCcceeeeeccCCcceeeec-cccccccccccccccccccCc--eeeecccccCCccceeecCCCceeEEe
Confidence              678999999999999999876665543 445667776666777888875  499999999999999998899999999


Q ss_pred             ccCC--CeEEEeeCCCeEEEEEcCCCceeeEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCe-eeEeeccccc
Q psy12697        371 WQSN--TSFASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDN-CVHDLQAHNK  447 (602)
Q Consensus       371 ~~~~--~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~  447 (602)
                      |+|.  ..+++|..|+.|.+||+++..+++++. -....+.|+|+|.+-.++++++|..++.||++... ++..      
T Consensus       195 fNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi-~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v------  267 (433)
T KOG0268|consen  195 FNPVETSILASCASDRSIVLYDLRQASPLKKVI-LTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNV------  267 (433)
T ss_pred             cCCCcchheeeeccCCceEEEecccCCccceee-eeccccceecCccccceeeccccccceehhhhhhcccchh------
Confidence            9997  457788899999999999999887765 34456789999998899999999999999998642 2322      


Q ss_pred             cEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeeecc-cCCCee
Q psy12697        448 EIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSF-HSAPAL  526 (602)
Q Consensus       448 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~~v~  526 (602)
                                                  ..+|.+.|.++.|||.|+-+++|+.|.+|+||.+..+.....+.. ....|.
T Consensus       268 ----------------------------~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~  319 (433)
T KOG0268|consen  268 ----------------------------HKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVF  319 (433)
T ss_pred             ----------------------------hcccceeEEEeccCCCcchhccccccceEEEeecCCCcchhhhhHhhhheee
Confidence                                        234667777888888889999999999999999987765443321 234699


Q ss_pred             EeeecCCc-eEEEeeCCCcEEEeecCCCCcee
Q psy12697        527 DVDWQSNT-SFASCSTDQHIHVCKLHSDKPVK  557 (602)
Q Consensus       527 ~~~~s~~~-~l~~~~~d~~i~iw~~~~~~~~~  557 (602)
                      ++.||.|. ++++|+.|+.|++|...-.+.+.
T Consensus       320 ~Vk~S~Dskyi~SGSdd~nvRlWka~Aseklg  351 (433)
T KOG0268|consen  320 CVKYSMDSKYIISGSDDGNVRLWKAKASEKLG  351 (433)
T ss_pred             EEEEeccccEEEecCCCcceeeeecchhhhcC
Confidence            99999999 99999999999999976554433

>KOG0301|consensus

Probab=99.97  E-value=4.6e-28  Score=226.71  Aligned_cols=284  Identities=25%  Similarity=0.384  Sum_probs=237.9

Q ss_pred             ceeeeeeeccCCceEEEEECCCCCeEEEeeCCceEEEEecCCceeEEEeeccCceEEEEeCCCCCCCCCCCCcccccccc
Q psy12697        130 GECLNTLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKGTGGIFEVCWNSRGTPPNPPESMEVDASIE  209 (602)
Q Consensus       130 ~~~~~~l~~h~~~V~~~~~s~d~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (602)
                      -+..+.+.||...|..+++.++. .++++|.||++++|+-..++.+..                                
T Consensus         4 Y~ls~~l~gH~~DVr~v~~~~~~-~i~s~sRd~t~~vw~~~~~~~l~~--------------------------------   50 (745)
T KOG0301|consen    4 YKLSHELEGHKSDVRAVAVTDGV-CIISGSRDGTVKVWAKKGKQYLET--------------------------------   50 (745)
T ss_pred             ceeEEEeccCccchheeEecCCe-EEeecCCCCceeeeeccCcccccc--------------------------------
Confidence            35667899999999988876554 899999999999999766554432                                


Q ss_pred             ccCCcceEeeCCCcceEE-EEEcC-CCCEEEEeeCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEe
Q psy12697        210 IPQSKATKLIGHESEVFI-CAWNP-VKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLD  287 (602)
Q Consensus       210 ~~~~~~~~l~~h~~~v~~-~~~~~-~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  287 (602)
                            ..+.+|.+.|.. +++.+ ++-.+++|+.|++|.+|......+..                ....|...|.|++
T Consensus        51 ------~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~----------------~LkgH~snVC~ls  108 (745)
T KOG0301|consen   51 ------HAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAEPLY----------------TLKGHKSNVCSLS  108 (745)
T ss_pred             ------eecccCcceeeccceeccccCcceEeecccceEEEEecCCCCchh----------------hhhccccceeeee
Confidence                  234456666666 77775 44569999999999999988776532                2334678899999


Q ss_pred             eCCCCCeEEEEeCCCeEEEEcCCCcceeecccccCCeEEEEEccCCCEEEEEecCCcEEEEeCCCCceeEEeeeccCCee
Q psy12697        288 WNNNGSFLATGSYDGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPAL  367 (602)
Q Consensus       288 ~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~  367 (602)
                      ...++. +++|+.|.++++|... ++...+.+|...|+++..-|++ .++||+.|.+|++|.-  ++.++++.+|...|.
T Consensus       109 ~~~~~~-~iSgSWD~TakvW~~~-~l~~~l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VR  183 (745)
T KOG0301|consen  109 IGEDGT-LISGSWDSTAKVWRIG-ELVYSLQGHTASVWAVASLPEN-TYVTGSADKTIKLWKG--GTLLKTFSGHTDCVR  183 (745)
T ss_pred             cCCcCc-eEecccccceEEecch-hhhcccCCcchheeeeeecCCC-cEEeccCcceeeeccC--Cchhhhhccchhhee
Confidence            888887 9999999999999754 4556699999999999999987 7999999999999975  788999999999999


Q ss_pred             eeeccCCCeEEEeeCCCeEEEEEcCCCceeeEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeeeEeeccccc
Q psy12697        368 DVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHDLQAHNK  447 (602)
Q Consensus       368 ~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~  447 (602)
                      .++..++..|++++.||.|+.|++ +++.+..+.+|.+-|.+++..+++..++++++|++++||+..  ++.+.+..+..
T Consensus       184 gL~vl~~~~flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lPtt  260 (745)
T KOG0301|consen  184 GLAVLDDSHFLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVITLPTT  260 (745)
T ss_pred             eeEEecCCCeEeecCCceEEEEec-cCceeeeeeccceEEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEecCcc
Confidence            999999999999999999999999 888999999999999999988888999999999999999876  77777776666


Q ss_pred             cEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCCCeEEEEeCCC
Q psy12697        448 EIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAAS  511 (602)
Q Consensus       448 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~~~  511 (602)
                      .+.++.+-+++.                                   +++|+.||.|+||....
T Consensus       261 siWsa~~L~NgD-----------------------------------Ivvg~SDG~VrVfT~~k  289 (745)
T KOG0301|consen  261 SIWSAKVLLNGD-----------------------------------IVVGGSDGRVRVFTVDK  289 (745)
T ss_pred             ceEEEEEeeCCC-----------------------------------EEEeccCceEEEEEecc
Confidence            666666555443                                   88899999999998763

>KOG0289|consensus

Probab=99.97  E-value=6.5e-28  Score=213.27  Aligned_cols=280  Identities=24%  Similarity=0.344  Sum_probs=240.3

Q ss_pred             CcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEeeCCCCCeEEEEeCC
Q psy12697        222 ESEVFICAWNPVKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFLATGSYD  301 (602)
Q Consensus       222 ~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d  301 (602)
                      ...+.++...|..+.+++|+.|..+.++|...++.....                .+|...|+.+.++|+...+++++.|
T Consensus       219 ~pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~----------------~Gh~kki~~v~~~~~~~~v~~aSad  282 (506)
T KOG0289|consen  219 TPGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILATL----------------KGHTKKITSVKFHKDLDTVITASAD  282 (506)
T ss_pred             CCCeeEEeecCCCCcceecCCCCceEEEecchhhhhhhc----------------cCcceEEEEEEeccchhheeecCCc
Confidence            346788888888889999999999999999887654321                2356789999999999999999999


Q ss_pred             CeEEEEcCC-CcceeecccccCCeEEEEEccCCCEEEEEecCCcEEEEeCCCCceeEEeeec--cCCeeeeeccCCCe-E
Q psy12697        302 GYARIWTSD-GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFH--SAPALDVDWQSNTS-F  377 (602)
Q Consensus       302 g~i~i~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~--~~~~~~~~~~~~~~-~  377 (602)
                      -.|++|... .........|..+|+.+..+|.|.||++++.||+..+.|++++..+......  ...+.+..|+|++. |
T Consensus       283 ~~i~vws~~~~s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLif  362 (506)
T KOG0289|consen  283 EIIRVWSVPLSSEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIF  362 (506)
T ss_pred             ceEEeeccccccCccccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEE
Confidence            999999976 4455667789999999999999999999999999999999999988776653  34688999999987 6


Q ss_pred             EEeeCCCeEEEEEcCCCceeeEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeeeEeeccccccEEEEEECCC
Q psy12697        378 ASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHDLQAHNKEIYTIKWSPT  457 (602)
Q Consensus       378 ~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~  457 (602)
                      .+|..|+.+++||+.+...+..|.+|.++|..++|+.+|-+|+++++|+.|++||++..+...++...            
T Consensus       363 gtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~------------  430 (506)
T KOG0289|consen  363 GTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLD------------  430 (506)
T ss_pred             eccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeecc------------
Confidence            78889999999999999999999999999999999999999999999999999999987766665432            


Q ss_pred             CCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCCCeEEEEeC--CCCceeeeecccCCCeeEeeecCCc-
Q psy12697        458 GPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDA--ASGQCEQQFSFHSAPALDVDWQSNT-  534 (602)
Q Consensus       458 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~--~~~~~~~~~~~~~~~v~~~~~s~~~-  534 (602)
                                           ...++.++.|.+.|.+|+.++.|=.|++++-  .++.++..+..|.+..+.+.|.... 
T Consensus       431 ---------------------~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq  489 (506)
T KOG0289|consen  431 ---------------------EKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKELADHSGLSTGVRFGEHAQ  489 (506)
T ss_pred             ---------------------ccccceeEEEcCCCCeEEeecceeEEEEEecccccceeeehhhhcccccceeeecccce
Confidence                                 2236778888889999999988866777663  3567788888899999999999888 


Q ss_pred             eEEEeeCCCcEEEeec
Q psy12697        535 SFASCSTDQHIHVCKL  550 (602)
Q Consensus       535 ~l~~~~~d~~i~iw~~  550 (602)
                      ++++++.|..++++.+
T Consensus       490 ~l~s~smd~~l~~~a~  505 (506)
T KOG0289|consen  490 YLASTSMDAILRLYAL  505 (506)
T ss_pred             EEeeccchhheEEeec
Confidence            9999999999988864

>PTZ00421 coronin; Provisional

Probab=99.97  E-value=3.3e-27  Score=230.46  Aligned_cols=283  Identities=16%  Similarity=0.183  Sum_probs=209.7

Q ss_pred             cCCceEEEEECCCCCeEEEeeCCceEEEEecCCceeEEEeeccCceEEEEeCCCCCCCCCCCCccccccccccCCcceEe
Q psy12697        139 HTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKGTGGIFEVCWNSRGTPPNPPESMEVDASIEIPQSKATKL  218 (602)
Q Consensus       139 h~~~V~~~~~s~d~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  218 (602)
                      |-..|.....++|+..+++++.+..+..|+...+..+..+...           |               ..+ .....+
T Consensus        19 ~~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~-----------G---------------~~~-~~~~~l   71 (493)
T PTZ00421         19 HFLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDY-----------G---------------KLA-SNPPIL   71 (493)
T ss_pred             ceeccccccccCCCCCcEeECCceEEEEEecCCceEEeecccc-----------c---------------cCC-CCCceE
Confidence            4456677778889888899999999999987665433221110           0               000 112457


Q ss_pred             eCCCcceEEEEEcC-CCCEEEEeeCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEeeCCCC-CeEE
Q psy12697        219 IGHESEVFICAWNP-VKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNG-SFLA  296 (602)
Q Consensus       219 ~~h~~~v~~~~~~~-~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~  296 (602)
                      .+|.+.|.+++|+| ++++|++++.|++|++||+.+..........         ......|...|.+++|+|++ ++|+
T Consensus        72 ~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~---------l~~L~gH~~~V~~l~f~P~~~~iLa  142 (493)
T PTZ00421         72 LGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDP---------IVHLQGHTKKVGIVSFHPSAMNVLA  142 (493)
T ss_pred             eCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcc---------eEEecCCCCcEEEEEeCcCCCCEEE
Confidence            89999999999999 7899999999999999999765321110000         01123467889999999975 6899


Q ss_pred             EEeCCCeEEEEcCC-CcceeecccccCCeEEEEEccCCCEEEEEecCCcEEEEeCCCCceeEEeeeccCC-eeeeeccCC
Q psy12697        297 TGSYDGYARIWTSD-GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAP-ALDVDWQSN  374 (602)
Q Consensus       297 ~~~~dg~i~i~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~-~~~~~~~~~  374 (602)
                      +++.|+.|++||+. +.....+..|...|.+++|+|++++|++++.|+.|++||+++++.+..+..|... ...+.|.++
T Consensus       143 Sgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~  222 (493)
T PTZ00421        143 SAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKR  222 (493)
T ss_pred             EEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCC
Confidence            99999999999987 5566778889999999999999999999999999999999999998888877654 345667765


Q ss_pred             -CeEEEee----CCCeEEEEEcCCCc-eeeEeccCC-CCeEEEEECCCCCEEEEEE-CCCeEEEEeCCCCeeeEeecc-c
Q psy12697        375 -TSFASCS----TDQHIHVCKLHSDK-PVKSFEGHT-NEVNAIKWDPQGLLLASCS-DDMTLKIWSLDKDNCVHDLQA-H  445 (602)
Q Consensus       375 -~~~~~~~----~~~~i~i~d~~~~~-~~~~~~~~~-~~i~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~-~  445 (602)
                       +.+++++    .|+.|++||+++.. ++.....+. ..+....|++++++|++++ .|+.|++||+.+++.+..... .
T Consensus       223 ~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~s  302 (493)
T PTZ00421        223 KDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYSS  302 (493)
T ss_pred             CCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeeccC
Confidence             4555543    47899999998754 444443333 4566678999999999988 499999999998877665433 2


Q ss_pred             cccEEEEEECCC
Q psy12697        446 NKEIYTIKWSPT  457 (602)
Q Consensus       446 ~~~i~~~~~~~~  457 (602)
                      ..+...++|.|.
T Consensus       303 ~~~~~g~~~~pk  314 (493)
T PTZ00421        303 VEPHKGLCMMPK  314 (493)
T ss_pred             CCCCcceEeccc
Confidence            334555555553

>KOG0294|consensus

Probab=99.97  E-value=4.6e-28  Score=205.63  Aligned_cols=245  Identities=22%  Similarity=0.365  Sum_probs=203.7

Q ss_pred             eeeeeeeccCCceEEEEECCCCCeEEEeeCCceEEEEecCCceeEEEeeccCceEEEEeCCCCCCCCCCCCccccccccc
Q psy12697        131 ECLNTLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKGTGGIFEVCWNSRGTPPNPPESMEVDASIEI  210 (602)
Q Consensus       131 ~~~~~l~~h~~~V~~~~~s~d~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (602)
                      .++..+..|.++|++++.+  +.++|+||.|.+|+|||+++...+                                   
T Consensus        34 ~~lF~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~ql-----------------------------------   76 (362)
T KOG0294|consen   34 KPLFAFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQL-----------------------------------   76 (362)
T ss_pred             eccccccccccceeEEEec--ceeEeccCCCCcEEEEeccchhhh-----------------------------------
Confidence            3456778899999999987  999999999999999999887665                                   


Q ss_pred             cCCcceEeeCCCcceEEEEEcCCCC--EEEEeeCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEee
Q psy12697        211 PQSKATKLIGHESEVFICAWNPVKD--FLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDW  288 (602)
Q Consensus       211 ~~~~~~~l~~h~~~v~~~~~~~~~~--~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  288 (602)
                           ..+..|.+.|+++.|.+.-.  .|++|+.||.|.+|+...-....                ...+|.+.|+.++.
T Consensus        77 -----g~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~----------------slK~H~~~Vt~lsi  135 (362)
T KOG0294|consen   77 -----GILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLK----------------SLKAHKGQVTDLSI  135 (362)
T ss_pred             -----cceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEee----------------eecccccccceeEe
Confidence                 44567999999999999764  99999999999999987654321                22345678999999


Q ss_pred             CCCCCeEEEEeCCCeEEEEcCC-CcceeecccccCCeEEEEEccCCCEEEEEecCCcEEEEeCCCCceeEEeeeccCCee
Q psy12697        289 NNNGSFLATGSYDGYARIWTSD-GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPAL  367 (602)
Q Consensus       289 ~~~~~~l~~~~~dg~i~i~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~  367 (602)
                      +|.+++.++.+.|+.+++||+- |+....+. -...-+.+.|+|.|.+++.++.+ .|-+|.+.+-.....+... ..+.
T Consensus       136 HPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~-L~~~at~v~w~~~Gd~F~v~~~~-~i~i~q~d~A~v~~~i~~~-~r~l  212 (362)
T KOG0294|consen  136 HPSGKLALSVGGDQVLRTWNLVRGRVAFVLN-LKNKATLVSWSPQGDHFVVSGRN-KIDIYQLDNASVFREIENP-KRIL  212 (362)
T ss_pred             cCCCceEEEEcCCceeeeehhhcCccceeec-cCCcceeeEEcCCCCEEEEEecc-EEEEEecccHhHhhhhhcc-ccce
Confidence            9999999999999999999964 43332222 22333459999999999988876 5899998877665554433 5688


Q ss_pred             eeeccCCCeEEEeeCCCeEEEEEcCCCceeeEeccCCCCeEEEEE--CCCCCEEEEEECCCeEEEEeCCCC
Q psy12697        368 DVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKW--DPQGLLLASCSDDMTLKIWSLDKD  436 (602)
Q Consensus       368 ~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~--~~~~~~l~~~~~dg~i~iwd~~~~  436 (602)
                      ++.|...+.+++|..|+.|.+||..+..+...+.+|..+|..+.+  .|++.+|+++|.||.|++||++..
T Consensus       213 ~~~~l~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~  283 (362)
T KOG0294|consen  213 CATFLDGSELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDME  283 (362)
T ss_pred             eeeecCCceEEEecCCceEEEeccCCCccceeeecchhheeeeEEEecCCceEEEEeccCceEEEEEcccc
Confidence            889999999999999999999999999999999999999999984  567899999999999999999865

>KOG0294|consensus

Probab=99.96  E-value=1.9e-27  Score=201.92  Aligned_cols=256  Identities=21%  Similarity=0.300  Sum_probs=209.3

Q ss_pred             eEEEEeCCCeEEEEcCCCc-------------ceeecccccCCeEEEEEccCCCEEEEEecCCcEEEEeCCCCceeEEee
Q psy12697        294 FLATGSYDGYARIWTSDGS-------------LKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFS  360 (602)
Q Consensus       294 ~l~~~~~dg~i~i~~~~~~-------------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~  360 (602)
                      .|++|++...|.-+++.-.             ....+..|.+.|++++.+  +.++++|+.|-+|+|||++....+..+.
T Consensus         3 ~iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg~ll   80 (362)
T KOG0294|consen    3 EIIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQLGILL   80 (362)
T ss_pred             eEEEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEec--ceeEeccCCCCcEEEEeccchhhhccee
Confidence            3667777776666654321             133456899999999986  8899999999999999999999999999


Q ss_pred             eccCCeeeeeccCCC---eEEEeeCCCeEEEEEcCCCceeeEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCe
Q psy12697        361 FHSAPALDVDWQSNT---SFASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDN  437 (602)
Q Consensus       361 ~~~~~~~~~~~~~~~---~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~  437 (602)
                      .|.+.++++.|.++.   .+++|+.||.|.+|+......+..+++|.+.|+.++.+|.+++-++.+.|+.+++||+-.++
T Consensus        81 ~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr  160 (362)
T KOG0294|consen   81 SHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGR  160 (362)
T ss_pred             ccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCc
Confidence            999999999998875   79999999999999999999999999999999999999999999999999999999999887


Q ss_pred             eeEeeccccccEEEEEECCCCCCCCCCCcceeeeeeec----cCC--ccCCeEEEEEccCCCEEEEEeCCCeEEEEeCCC
Q psy12697        438 CVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKST----LGQ--HKGPIFALKWNKRGNYILSAGVDKTTIIWDAAS  511 (602)
Q Consensus       438 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~--~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~~~  511 (602)
                      .-..+.... .-..+.|+|.+..........+..+...    +..  ....+.++.|- ++.+|++|+.|+.|.+||..+
T Consensus       161 ~a~v~~L~~-~at~v~w~~~Gd~F~v~~~~~i~i~q~d~A~v~~~i~~~~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds  238 (362)
T KOG0294|consen  161 VAFVLNLKN-KATLVSWSPQGDHFVVSGRNKIDIYQLDNASVFREIENPKRILCATFL-DGSELLVGGDNEWISLKDTDS  238 (362)
T ss_pred             cceeeccCC-cceeeEEcCCCCEEEEEeccEEEEEecccHhHhhhhhccccceeeeec-CCceEEEecCCceEEEeccCC
Confidence            665554332 2344999999886554444444333221    111  22345566665 567899999999999999999


Q ss_pred             CceeeeecccCCCeeEeee--cCCc-eEEEeeCCCcEEEeecCCC
Q psy12697        512 GQCEQQFSFHSAPALDVDW--QSNT-SFASCSTDQHIHVCKLHSD  553 (602)
Q Consensus       512 ~~~~~~~~~~~~~v~~~~~--s~~~-~l~~~~~d~~i~iw~~~~~  553 (602)
                      ..+...+.+|...|.++.+  .|++ +|+++++||.|+|||++..
T Consensus       239 ~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~  283 (362)
T KOG0294|consen  239 DTPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDME  283 (362)
T ss_pred             CccceeeecchhheeeeEEEecCCceEEEEeccCceEEEEEcccc
Confidence            9999999999999999985  5667 9999999999999999865

>KOG0647|consensus

Probab=99.96  E-value=1.9e-27  Score=200.66  Aligned_cols=278  Identities=20%  Similarity=0.295  Sum_probs=217.9

Q ss_pred             CCcceEEEEEcCC-CCEEEEeeCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEeeCCCCCeEEEEe
Q psy12697        221 HESEVFICAWNPV-KDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFLATGS  299 (602)
Q Consensus       221 h~~~v~~~~~~~~-~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  299 (602)
                      ..+.|.+++|||. ..+++++|.|++||+|+++.......              .....+.++|.+++|+.||..+++|+
T Consensus        26 P~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~--------------ka~~~~~~PvL~v~WsddgskVf~g~   91 (347)
T KOG0647|consen   26 PEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVP--------------KAQQSHDGPVLDVCWSDDGSKVFSGG   91 (347)
T ss_pred             cccchheeEeccccCceEEecccCCceEEEEEecCCcccc--------------hhhhccCCCeEEEEEccCCceEEeec
Confidence            4678999999994 46666899999999999987532211              12234579999999999999999999


Q ss_pred             CCCeEEEEcCCCcceeecccccCCeEEEEEccCCC--EEEEEecCCcEEEEeCCCCceeEEeeeccCCeeeeeccCCCeE
Q psy12697        300 YDGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGN--YILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTSF  377 (602)
Q Consensus       300 ~dg~i~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  377 (602)
                      .|+.+++||+.......+..|.++|..+.|-+...  .|++|+.|++|+.||++....+.++.... .+.++.. -...+
T Consensus        92 ~Dk~~k~wDL~S~Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPe-RvYa~Dv-~~pm~  169 (347)
T KOG0647|consen   92 CDKQAKLWDLASGQVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPE-RVYAADV-LYPMA  169 (347)
T ss_pred             cCCceEEEEccCCCeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccc-eeeehhc-cCcee
Confidence            99999999999888899999999999999988665  79999999999999999888887776543 2333322 12457


Q ss_pred             EEeeCCCeEEEEEcCCCceeeE-ec-cCCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCC--eeeEeeccccccEEEEE
Q psy12697        378 ASCSTDQHIHVCKLHSDKPVKS-FE-GHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKD--NCVHDLQAHNKEIYTIK  453 (602)
Q Consensus       378 ~~~~~~~~i~i~d~~~~~~~~~-~~-~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~--~~~~~~~~~~~~i~~~~  453 (602)
                      +++..+..|.+|+++++..... .. .-.-.++|++..++....+.|+-+|++.|..++.+  +.-.+++.|...-.   
T Consensus       170 vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~---  246 (347)
T KOG0647|consen  170 VVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNS---  246 (347)
T ss_pred             EEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCC---
Confidence            7888899999999977643221 11 12235899999999888899999999999998876  33344444432100   


Q ss_pred             ECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeeecccCCCeeEeeecCC
Q psy12697        454 WSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSN  533 (602)
Q Consensus       454 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~  533 (602)
                                            ..+.-..|++|+|+|.-..|+|+|.||+..+||-.....+.+...|..+|++.+|+.+
T Consensus       247 ----------------------~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc~fn~~  304 (347)
T KOG0647|consen  247 ----------------------VNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQPITCCSFNRN  304 (347)
T ss_pred             ----------------------CCCceEEecceEeecccceEEEecCCceEEEecchhhhhhhccCcCCCccceeEecCC
Confidence                                  0012346788999998889999999999999999988888998999999999999999


Q ss_pred             c-eEEEe
Q psy12697        534 T-SFASC  539 (602)
Q Consensus       534 ~-~l~~~  539 (602)
                      | .+|.+
T Consensus       305 G~ifaYA  311 (347)
T KOG0647|consen  305 GSIFAYA  311 (347)
T ss_pred             CCEEEEE
Confidence            9 55544

>PTZ00420 coronin; Provisional

Probab=99.96  E-value=7.6e-27  Score=228.58  Aligned_cols=250  Identities=18%  Similarity=0.266  Sum_probs=193.7

Q ss_pred             EeCCCeEEEEcCC-CcceeecccccCCeEEEEEccC-CCEEEEEecCCcEEEEeCCCCc--------eeEEeeeccCCee
Q psy12697        298 GSYDGYARIWTSD-GSLKSTLGQHKGPIFALKWNKR-GNYILSAGVDKTTIIWDAASGQ--------CEQQFSFHSAPAL  367 (602)
Q Consensus       298 ~~~dg~i~i~~~~-~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~i~~wd~~~~~--------~~~~~~~~~~~~~  367 (602)
                      |+.++.+++|+.. ......+.+|.+.|.+++|+|+ +++|++|+.|++|++||+.++.        .+..+..|...+.
T Consensus        50 GG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~  129 (568)
T PTZ00420         50 GGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKIS  129 (568)
T ss_pred             CCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEE
Confidence            5667889999864 4456678899999999999996 7899999999999999998642        2345677889999


Q ss_pred             eeeccCCCe--EEEeeCCCeEEEEEcCCCceeeEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeeeEeeccc
Q psy12697        368 DVDWQSNTS--FASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHDLQAH  445 (602)
Q Consensus       368 ~~~~~~~~~--~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~  445 (602)
                      ++.|+|++.  +++++.|+.|++||+++++.+..+. |...|.+++|+|+|.+|++++.|+.|+|||+++++.+.++.+|
T Consensus       130 sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH  208 (568)
T PTZ00420        130 IIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIH  208 (568)
T ss_pred             EEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEecc
Confidence            999999753  5688999999999999998777776 5678999999999999999999999999999999988888877


Q ss_pred             cccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCCC----eEEEEeCCC-Cceeeeecc
Q psy12697        446 NKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDK----TTIIWDAAS-GQCEQQFSF  520 (602)
Q Consensus       446 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg----~i~iwd~~~-~~~~~~~~~  520 (602)
                      .+.+....                             +....|++++++|++++.|+    .|+|||+++ ++++..+..
T Consensus       209 ~g~~~s~~-----------------------------v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~l  259 (568)
T PTZ00420        209 DGGKNTKN-----------------------------IWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSI  259 (568)
T ss_pred             cCCceeEE-----------------------------EEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEe
Confidence            66543322                             12234667889999988774    799999985 556655443


Q ss_pred             --cCCCeeEeeecCCc-eEEEeeCCCcEEEeecCCCCceeeeecccccceEEEEecCCcEEEEEECCCCC
Q psy12697        521 --HSAPALDVDWQSNT-SFASCSTDQHIHVCKLHSDKPVKSFEGHTTGQLVHSYKGTGGIFEVCWNSRGD  587 (602)
Q Consensus       521 --~~~~v~~~~~s~~~-~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~  587 (602)
                        +.+.+......+++ ++++|+.|+.|++|++..+. +..+         ..+....+...++|.|+..
T Consensus       260 d~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~-~~~l---------~~~~s~~p~~g~~f~Pkr~  319 (568)
T PTZ00420        260 DNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLGS-IRKV---------NEYKSCSPFRSFGFLPKQI  319 (568)
T ss_pred             cCCccceEEeeeCCCCCEEEEEECCCeEEEEEccCCc-EEee---------cccccCCCccceEEccccc
Confidence              33334444445667 88899999999999997653 2222         2233346778889988753

>KOG1036|consensus

Probab=99.96  E-value=3e-27  Score=200.37  Aligned_cols=269  Identities=16%  Similarity=0.240  Sum_probs=218.8

Q ss_pred             CCCCceeEEeeCCCCCeEEEEeCCCeEEEEcCCCcceeecccccCCeEEEEEccCCCEEEEEecCCcEEEEeCCCCceeE
Q psy12697        278 PSNKDVTSLDWNNNGSFLATGSYDGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQ  357 (602)
Q Consensus       278 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~  357 (602)
                      +....|+++.|+|.+..|++++.||.+++|+.........-.|..++.+++|.++ ..+++|+.||.|+.+|+.++... 
T Consensus        11 pP~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~~~~plL~c~F~d~-~~~~~G~~dg~vr~~Dln~~~~~-   88 (323)
T KOG1036|consen   11 PPEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFKHGAPLLDCAFADE-STIVTGGLDGQVRRYDLNTGNED-   88 (323)
T ss_pred             CChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhheecCCceeeeeccCC-ceEEEeccCceEEEEEecCCcce-
Confidence            3457899999999999999999999999999987766666679999999999874 67999999999999999987644 


Q ss_pred             EeeeccCCeeeeeccCC-CeEEEeeCCCeEEEEEcCCCceeeEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCC
Q psy12697        358 QFSFHSAPALDVDWQSN-TSFASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKD  436 (602)
Q Consensus       358 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~  436 (602)
                      .+..|..++.++.+.+. +.+++|+.|+.|++||.+.......+.. ...|.++..+  |..|++|+.|..+.+||+++.
T Consensus        89 ~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~-~kkVy~~~v~--g~~LvVg~~~r~v~iyDLRn~  165 (323)
T KOG1036|consen   89 QIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQ-GKKVYCMDVS--GNRLVVGTSDRKVLIYDLRNL  165 (323)
T ss_pred             eeccCCCceEEEEeeccCCeEEEcccCccEEEEecccccccccccc-CceEEEEecc--CCEEEEeecCceEEEEEcccc
Confidence            45668899999999875 7899999999999999998655555553 3378777765  678999999999999999986


Q ss_pred             eeeEeeccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCC----
Q psy12697        437 NCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASG----  512 (602)
Q Consensus       437 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~~~~----  512 (602)
                      ....+.+..                                .-+..+.++++-|++.=++.++-||.|.+=.++..    
T Consensus       166 ~~~~q~reS--------------------------------~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~  213 (323)
T KOG1036|consen  166 DEPFQRRES--------------------------------SLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQ  213 (323)
T ss_pred             cchhhhccc--------------------------------cceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHh
Confidence            544322211                                12345667777777777899999999998777665    


Q ss_pred             ceeeeecccCC---------CeeEeeecCCc-eEEEeeCCCcEEEeecCCCCceeeeecccccceEEEEecCCcEEEEEE
Q psy12697        513 QCEQQFSFHSA---------PALDVDWQSNT-SFASCSTDQHIHVCKLHSDKPVKSFEGHTTGQLVHSYKGTGGIFEVCW  582 (602)
Q Consensus       513 ~~~~~~~~~~~---------~v~~~~~s~~~-~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~  582 (602)
                      +....|+.|..         ||.+++|+|-. .|+||+.||.|.+||+.+.+.+..+....           ..|.+++|
T Consensus       214 skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~-----------~SI~slsf  282 (323)
T KOG1036|consen  214 SKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKYE-----------TSISSLSF  282 (323)
T ss_pred             hhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchhhhhhccCCC-----------CceEEEEe
Confidence            33345666643         79999999987 99999999999999999988887776553           66999999


Q ss_pred             CCCCCeEEEecc
Q psy12697        583 NSRGDKVGASAS  594 (602)
Q Consensus       583 spdg~~l~~~~~  594 (602)
                      +.||..||++++
T Consensus       283 s~dG~~LAia~s  294 (323)
T KOG1036|consen  283 SMDGSLLAIASS  294 (323)
T ss_pred             ccCCCeEEEEec
Confidence            999999999875

>KOG1036|consensus

Probab=99.96  E-value=2.9e-27  Score=200.52  Aligned_cols=276  Identities=15%  Similarity=0.199  Sum_probs=221.0

Q ss_pred             CCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEeeCCCCCeEEEEeC
Q psy12697        221 HESEVFICAWNPVKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFLATGSY  300 (602)
Q Consensus       221 h~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~  300 (602)
                      ....|..+.|+|.+..|++++.||++++|++........                 ..+..++.+++|.++ ..+++|+.
T Consensus        12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~-----------------~~~~~plL~c~F~d~-~~~~~G~~   73 (323)
T KOG1036|consen   12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLK-----------------FKHGAPLLDCAFADE-STIVTGGL   73 (323)
T ss_pred             ChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhh-----------------eecCCceeeeeccCC-ceEEEecc
Confidence            356799999999999999999999999999987743321                 234688999999884 57999999


Q ss_pred             CCeEEEEcCCCcceeecccccCCeEEEEEccCCCEEEEEecCCcEEEEeCCCCceeEEeeeccCCeeeeeccCCCeEEEe
Q psy12697        301 DGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTSFASC  380 (602)
Q Consensus       301 dg~i~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  380 (602)
                      ||.|+.+|++......+..|..+|.++.+++....+++|+.|++|++||.+.......+.... .|.++... ++.+++|
T Consensus        74 dg~vr~~Dln~~~~~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~k-kVy~~~v~-g~~LvVg  151 (323)
T KOG1036|consen   74 DGQVRRYDLNTGNEDQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQGK-KVYCMDVS-GNRLVVG  151 (323)
T ss_pred             CceEEEEEecCCcceeeccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccccCc-eEEEEecc-CCEEEEe
Confidence            999999999988888999999999999999988899999999999999999754444443332 66666643 5678889


Q ss_pred             eCCCeEEEEEcCCCceeeEec--cCCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCC----eeeEeeccccccEEEEEE
Q psy12697        381 STDQHIHVCKLHSDKPVKSFE--GHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKD----NCVHDLQAHNKEIYTIKW  454 (602)
Q Consensus       381 ~~~~~i~i~d~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~----~~~~~~~~~~~~i~~~~~  454 (602)
                      +.+..+.+||+++.....+..  .-.-.++++++-|++.-.++++-||+|.+=.++..    +....++.|...-     
T Consensus       152 ~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~-----  226 (323)
T KOG1036|consen  152 TSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSE-----  226 (323)
T ss_pred             ecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeeccc-----
Confidence            999999999999875433222  23346899999999989999999999988766654    2233344442210     


Q ss_pred             CCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeeecccCCCeeEeeecCCc
Q psy12697        455 SPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNT  534 (602)
Q Consensus       455 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~  534 (602)
                        +                  -..--.+|++|+|+|--..|+||+.||.|.+||+.+.+.+..+......|.+++|+.||
T Consensus       227 --~------------------~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG  286 (323)
T KOG1036|consen  227 --K------------------DTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSMDG  286 (323)
T ss_pred             --C------------------CceEEEEeceeEeccccceEEecCCCceEEEccCcchhhhhhccCCCCceEEEEeccCC
Confidence              0                  01123578999999998999999999999999999999999998888889999999999


Q ss_pred             -eEEEeeC
Q psy12697        535 -SFASCST  541 (602)
Q Consensus       535 -~l~~~~~  541 (602)
                       .||.++.
T Consensus       287 ~~LAia~s  294 (323)
T KOG1036|consen  287 SLLAIASS  294 (323)
T ss_pred             CeEEEEec
Confidence             8888764

>KOG0308|consensus

Probab=99.96  E-value=1.5e-28  Score=228.10  Aligned_cols=347  Identities=18%  Similarity=0.259  Sum_probs=257.3

Q ss_pred             eeccceeeeecccce------eeeeeeccCCceEEEEECCCCCeEEEeeCCceEEEEecCCceeEEEeeccCceEEEEeC
Q psy12697        117 VHRLTLPLWDVERGE------CLNTLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKGTGGIFEVCWN  190 (602)
Q Consensus       117 ~~~~~i~vwd~~~~~------~~~~l~~h~~~V~~~~~s~d~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~  190 (602)
                      ++++.|++|+...-.      .+.++..|++.|..++...+++.|+++|.|-+|++|+...+...               
T Consensus        44 GRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~---------------  108 (735)
T KOG0308|consen   44 GRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTF---------------  108 (735)
T ss_pred             CCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcch---------------
Confidence            457899999986432      47889999999999999999999999999999999998765311               


Q ss_pred             CCCCCCCCCCCccccccccccCCcceEeeCCCcceEEEEE-cCCCCEEEEeeCCCcEEEEeCCCCCC--CCCccceEEEE
Q psy12697        191 SRGTPPNPPESMEVDASIEIPQSKATKLIGHESEVFICAW-NPVKDFLASGSGDSTARIWDMTDSTK--KDPKELQIVLR  267 (602)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~-~~~~~~l~s~~~dg~i~iw~~~~~~~--~~~~~~~~~~~  267 (602)
                                             ....+..|.+.|.|+++ .++...+|+|+-|+.|.+||++++..  .......    
T Consensus       109 -----------------------c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~----  161 (735)
T KOG0308|consen  109 -----------------------CMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNV----  161 (735)
T ss_pred             -----------------------hHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhcccc----
Confidence                                   01456679999999999 78889999999999999999998743  1111110    


Q ss_pred             EEecCCCcccCCCCceeEEeeCCCCCeEEEEeCCCeEEEEcCC-CcceeecccccCCeEEEEEccCCCEEEEEecCCcEE
Q psy12697        268 HCISKGGTEVPSNKDVTSLDWNNNGSFLATGSYDGYARIWTSD-GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTI  346 (602)
Q Consensus       268 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~  346 (602)
                         ........+...|.+++.++.|..+++|+.++.+++||.. .+.+..+.+|...|.++..++||..+++++.||+|+
T Consensus       162 ---t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIr  238 (735)
T KOG0308|consen  162 ---TVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIR  238 (735)
T ss_pred             ---ccccCCCCCccceeeeecCCcceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEE
Confidence               0011112456889999999999999999999999999976 667778889999999999999999999999999999


Q ss_pred             EEeCCCCceeEEeeeccCCeeeeeccCC-CeEEEeeCCCeEEEEEcCCCceeeEeccCCCCeEEEEECCCCCEEEEEECC
Q psy12697        347 IWDAASGQCEQQFSFHSAPALDVDWQSN-TSFASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDD  425 (602)
Q Consensus       347 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d  425 (602)
                      +||+...+|+.++..|...+.++..+++ ..+.+|+.||.|+.-|+++......+-....+|..+..+.+.+-+-+++.|
T Consensus       239 lWdLgqQrCl~T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tlick~daPv~~l~~~~~~~~~WvtTtd  318 (735)
T KOG0308|consen  239 LWDLGQQRCLATYIVHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAKSTLICKEDAPVLKLHLHEHDNSVWVTTTD  318 (735)
T ss_pred             eeeccccceeeeEEeccCceEEEeeCCCcceEEecCCCCcEEecccCCchhheEeecCCCchhhhhhccccCCceeeecc
Confidence            9999999999999999999999998887 669999999999999999864444444456678888877655556788889


Q ss_pred             CeEEEEeCCCCeeeEeeccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCCCeEE
Q psy12697        426 MTLKIWSLDKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTI  505 (602)
Q Consensus       426 g~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~  505 (602)
                      +.|+-|-..-...+....   . ...  ++.+...-......   .-. .......+|...+.-.|.+.++|-...|.+.
T Consensus       319 s~I~rW~~~~~~~l~~s~---~-~~~--~~T~~~~~~~~~~~---tp~-~vi~Gg~ai~k~~mL~dkRhVlTkDa~gnv~  388 (735)
T KOG0308|consen  319 SSIKRWKLEPDIALSVSG---D-LDF--FSTDSNNHSCDLTN---TPD-SVIPGGAAIKKHAMLNDKRHVLTKDAKGNVA  388 (735)
T ss_pred             ccceecCCccccccccCC---C-CCc--ccccCCCccccccC---CCc-eeccCchhhhhhhhhcCcceEeeecCCCCEE
Confidence            999999765322111100   0 000  00000000000000   000 0011223344445556888999999999999


Q ss_pred             EEeCCCCceeeee
Q psy12697        506 IWDAASGQCEQQF  518 (602)
Q Consensus       506 iwd~~~~~~~~~~  518 (602)
                      +||+-....+..+
T Consensus       389 lwDIl~~~~~~d~  401 (735)
T KOG0308|consen  389 LWDILACVKVEDF  401 (735)
T ss_pred             EEEeeeeeehhhc
Confidence            9999776655544

>KOG1445|consensus

Probab=99.96  E-value=2.7e-27  Score=219.06  Aligned_cols=172  Identities=22%  Similarity=0.319  Sum_probs=128.7

Q ss_pred             eeeeeeeccCCceEEEEECC-CCCeEEEeeCCceEEEEecCCceeEEEeeccCceEEEEeCCCCCCCCCCCCcccccccc
Q psy12697        131 ECLNTLTRHTEPVYSVAFSP-DGKFLASGSFDKCVHIWSARTGQLVHSYKGTGGIFEVCWNSRGTPPNPPESMEVDASIE  209 (602)
Q Consensus       131 ~~~~~l~~h~~~V~~~~~s~-d~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (602)
                      +.+..|.+|.+.|+.+.|+| +..+||||+.|..|+||.+..|-... +..                             
T Consensus        70 r~i~~l~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~-LSa-----------------------------  119 (1012)
T KOG1445|consen   70 RDIGILAAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQK-LSA-----------------------------  119 (1012)
T ss_pred             cccceeecccceeeccCccccchhhhhcccCCCeeEEEecCCCcccc-cCC-----------------------------
Confidence            35667889999999999999 66799999999999999987443211 100                             


Q ss_pred             ccCCcceEeeCCCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEeeC
Q psy12697        210 IPQSKATKLIGHESEVFICAWNPVKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWN  289 (602)
Q Consensus       210 ~~~~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  289 (602)
                          ....+.+..-.|.++.|+|..+-|+..+..|+++|||+.+++...                ....|...|.+..|+
T Consensus       120 ----pe~~~g~~~~~vE~l~fHpTaDgil~s~a~g~v~i~D~stqk~~~----------------el~~h~d~vQSa~Ws  179 (1012)
T KOG1445|consen  120 ----PEIDVGGGNVIVECLRFHPTADGILASGAHGSVYITDISTQKTAV----------------ELSGHTDKVQSADWS  179 (1012)
T ss_pred             ----cceeecCCceEEEEeecccCcCceEEeccCceEEEEEcccCceee----------------cccCCchhhhccccc
Confidence                002233445578899999988777777778999999999876532                123457889999999


Q ss_pred             CCCCeEEEEeCCCeEEEEcCC--CcceeecccccCC-eEEEEEccCCCEEEEEecC----CcEEEEeCCC
Q psy12697        290 NNGSFLATGSYDGYARIWTSD--GSLKSTLGQHKGP-IFALKWNKRGNYILSAGVD----KTTIIWDAAS  352 (602)
Q Consensus       290 ~~~~~l~~~~~dg~i~i~~~~--~~~~~~~~~~~~~-i~~~~~~~~~~~l~~~~~d----g~i~~wd~~~  352 (602)
                      .||.++++.+.|..|+|||.+  +..++...+|.+. =..+.|.-+-..|++.+.+    ..|++||.+.
T Consensus       180 eDG~llatscKdkqirifDPRa~~~piQ~te~H~~~rdsRv~w~Gn~~rlisTGF~~~R~reV~~~Dtr~  249 (1012)
T KOG1445|consen  180 EDGKLLATSCKDKQIRIFDPRASMEPIQTTEGHGGMRDSRVLWAGNWERLISTGFTTKRIREVRAYDTRK  249 (1012)
T ss_pred             cCCceEeeecCCcceEEeCCccCCCccccccccccchhheeeeccchhhhhhcccchhhheeeeeeeccc
Confidence            999999999999999999976  5666677777653 2346676555577776654    5788998764

>KOG0289|consensus

Probab=99.96  E-value=3.6e-27  Score=208.65  Aligned_cols=276  Identities=17%  Similarity=0.313  Sum_probs=231.9

Q ss_pred             CceeEEeeCCCCCeEEEEeCCCeEEEEcCC-CcceeecccccCCeEEEEEccCCCEEEEEecCCcEEEEeCCCCceeEEe
Q psy12697        281 KDVTSLDWNNNGSFLATGSYDGYARIWTSD-GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQF  359 (602)
Q Consensus       281 ~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~  359 (602)
                      ..++++...|....+++|+.|..+.++|.. ++....+.+|...|+.+.++|+...+++++.|..|++|...........
T Consensus       220 pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~  299 (506)
T KOG0289|consen  220 PGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSS  299 (506)
T ss_pred             CCeeEEeecCCCCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCcccc
Confidence            568889888888899999999999999976 6778889999999999999999999999999999999999988888888


Q ss_pred             eeccCCeeeeeccCCC-eEEEeeCCCeEEEEEcCCCceeeEeccC--CCCeEEEEECCCCCEEEEEECCCeEEEEeCCCC
Q psy12697        360 SFHSAPALDVDWQSNT-SFASCSTDQHIHVCKLHSDKPVKSFEGH--TNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKD  436 (602)
Q Consensus       360 ~~~~~~~~~~~~~~~~-~~~~~~~~~~i~i~d~~~~~~~~~~~~~--~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~  436 (602)
                      ..|..+|..+...|.+ .|++++.|+...+.|++++..+......  .-.+++.+|+|||.+|.+|..||.|+|||+.++
T Consensus       300 ~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~  379 (506)
T KOG0289|consen  300 RPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQ  379 (506)
T ss_pred             ccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCc
Confidence            9999999999999875 5888999999999999999887766542  235899999999999999999999999999987


Q ss_pred             eeeEeeccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCceee
Q psy12697        437 NCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQ  516 (602)
Q Consensus       437 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~  516 (602)
                      ..+..|.+                                  |.++|..++|+.+|.||+++.+|+.|++||++.-+...
T Consensus       380 ~~~a~Fpg----------------------------------ht~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~k  425 (506)
T KOG0289|consen  380 TNVAKFPG----------------------------------HTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFK  425 (506)
T ss_pred             cccccCCC----------------------------------CCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccc
Confidence            76666554                                  66667777777789999999999999999999888777


Q ss_pred             eecccC-CCeeEeeecCCc-eEEEeeCCCcEEEeecCCCCceeeeecccccceEEEEec-CCcEEEEEECCCCCeEEEec
Q psy12697        517 QFSFHS-APALDVDWQSNT-SFASCSTDQHIHVCKLHSDKPVKSFEGHTTGQLVHSYKG-TGGIFEVCWNSRGDKVGASA  593 (602)
Q Consensus       517 ~~~~~~-~~v~~~~~s~~~-~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~l~~spdg~~l~~~~  593 (602)
                      ++.... .++.++.|.+.| +|+.++.|=.|++++-.+.          .+..+..+.. .+..+.+.|..+.++|++++
T Consensus       426 t~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k----------~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~s  495 (506)
T KOG0289|consen  426 TIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTK----------SWTEIKELADHSGLSTGVRFGEHAQYLASTS  495 (506)
T ss_pred             eeeccccccceeEEEcCCCCeEEeecceeEEEEEecccc----------cceeeehhhhcccccceeeecccceEEeecc
Confidence            776433 369999999999 9999988877777663322          2222222222 25788999999999999999


Q ss_pred             cCCeEEe
Q psy12697        594 SDGSVFK  600 (602)
Q Consensus       594 ~dg~v~i  600 (602)
                      -|..+++
T Consensus       496 md~~l~~  502 (506)
T KOG0289|consen  496 MDAILRL  502 (506)
T ss_pred             chhheEE
Confidence            9998775

>KOG0647|consensus

Probab=99.96  E-value=4.1e-27  Score=198.74  Aligned_cols=269  Identities=19%  Similarity=0.332  Sum_probs=213.9

Q ss_pred             CCCCceeEEeeCC-CCCeEEEEeCCCeEEEEcCCC--cc-eeecccccCCeEEEEEccCCCEEEEEecCCcEEEEeCCCC
Q psy12697        278 PSNKDVTSLDWNN-NGSFLATGSYDGYARIWTSDG--SL-KSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASG  353 (602)
Q Consensus       278 ~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~~~~~--~~-~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~~  353 (602)
                      +..+.|.+++||| ...++++++.||+|++|+++.  .. -+....|.++|.+++|+.+|..+++|+.|+.+++||+.++
T Consensus        25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~  104 (347)
T KOG0647|consen   25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASG  104 (347)
T ss_pred             CcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCC
Confidence            3467899999999 556677999999999999874  22 2345679999999999999999999999999999999999


Q ss_pred             ceeEEeeeccCCeeeeeccCC---CeEEEeeCCCeEEEEEcCCCceeeEeccCCCCeEEEEECCCCCEEEEEECCCeEEE
Q psy12697        354 QCEQQFSFHSAPALDVDWQSN---TSFASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKI  430 (602)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i  430 (602)
                       ....+..|..++..+.|.+.   ..+++|+.|.+|+.||.+...++.++.-. +++.++..  ...+++++..+..|.+
T Consensus       105 -Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LP-eRvYa~Dv--~~pm~vVata~r~i~v  180 (347)
T KOG0647|consen  105 -QVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLP-ERVYAADV--LYPMAVVATAERHIAV  180 (347)
T ss_pred             -CeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeecc-ceeeehhc--cCceeEEEecCCcEEE
Confidence             56778889999999999876   35899999999999999999998887743 44555544  3458888999999999


Q ss_pred             EeCCCCeeeEeeccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCCCeEEEEeCC
Q psy12697        431 WSLDKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAA  510 (602)
Q Consensus       431 wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~~  510 (602)
                      |+++++.....  .+.++                              -+-.+.+++.-+|.+..+.|+-+|.+.|..+.
T Consensus       181 ynL~n~~te~k--~~~Sp------------------------------Lk~Q~R~va~f~d~~~~alGsiEGrv~iq~id  228 (347)
T KOG0647|consen  181 YNLENPPTEFK--RIESP------------------------------LKWQTRCVACFQDKDGFALGSIEGRVAIQYID  228 (347)
T ss_pred             EEcCCCcchhh--hhcCc------------------------------ccceeeEEEEEecCCceEeeeecceEEEEecC
Confidence            99976543221  11111                              23345677777777778999999999999998


Q ss_pred             CC--ceeeeecccCC---------CeeEeeecCCc-eEEEeeCCCcEEEeecCCCCceeeeecccccceEEEEecCCcEE
Q psy12697        511 SG--QCEQQFSFHSA---------PALDVDWQSNT-SFASCSTDQHIHVCKLHSDKPVKSFEGHTTGQLVHSYKGTGGIF  578 (602)
Q Consensus       511 ~~--~~~~~~~~~~~---------~v~~~~~s~~~-~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  578 (602)
                      .+  +.-.+|+.|..         .|.+++|+|.. .|+++|.||++.+||-+....+.+.+.+.           .+|+
T Consensus       229 ~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~-----------qpIt  297 (347)
T KOG0647|consen  229 DPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETHP-----------QPIT  297 (347)
T ss_pred             CCCccCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhhhhhccCcCC-----------Cccc
Confidence            87  33456666653         47889999987 99999999999999977666665555443           7899


Q ss_pred             EEEECCCCCeEEEec
Q psy12697        579 EVCWNSRGDKVGASA  593 (602)
Q Consensus       579 ~l~~spdg~~l~~~~  593 (602)
                      +.+|+.+|.++|.+.
T Consensus       298 cc~fn~~G~ifaYA~  312 (347)
T KOG0647|consen  298 CCSFNRNGSIFAYAL  312 (347)
T ss_pred             eeEecCCCCEEEEEe
Confidence            999999999988764

>PTZ00420 coronin; Provisional

Probab=99.96  E-value=5.2e-26  Score=222.74  Aligned_cols=241  Identities=19%  Similarity=0.347  Sum_probs=171.5

Q ss_pred             eEeeCCCcceEEEEEcCC-CCEEEEeeCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEeeCCCCCe
Q psy12697        216 TKLIGHESEVFICAWNPV-KDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSF  294 (602)
Q Consensus       216 ~~l~~h~~~v~~~~~~~~-~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  294 (602)
                      ..+.+|...|.+++|+|+ +.+|++|+.|++|++||+.++...... ....       ......|...|.+++|+|++..
T Consensus        68 ~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~-i~~p-------~~~L~gH~~~V~sVaf~P~g~~  139 (568)
T PTZ00420         68 IKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKE-IKDP-------QCILKGHKKKISIIDWNPMNYY  139 (568)
T ss_pred             EEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccc-cccc-------eEEeecCCCcEEEEEECCCCCe
Confidence            456789999999999997 789999999999999999864321100 0000       0012245788999999998875


Q ss_pred             -EEEEeCCCeEEEEcCCCc-ceeecccccCCeEEEEEccCCCEEEEEecCCcEEEEeCCCCceeEEeeeccCCeeeeecc
Q psy12697        295 -LATGSYDGYARIWTSDGS-LKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQ  372 (602)
Q Consensus       295 -l~~~~~dg~i~i~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~  372 (602)
                       +++++.|+.|++||+... ....+. |...|.+++|+|+|++|++++.|+.|++||+++++.+..+..|...+...   
T Consensus       140 iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~---  215 (568)
T PTZ00420        140 IMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTK---  215 (568)
T ss_pred             EEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEecccCCceeE---
Confidence             578899999999998744 333443 66789999999999999999999999999999887766555443321110   


Q ss_pred             CCCeEEEeeCCCeEEEEEcCCCceeeEeccCCCCeEEEEECCCCCEEEEEECCC----eEEEEeCCC-CeeeEeeccccc
Q psy12697        373 SNTSFASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDM----TLKIWSLDK-DNCVHDLQAHNK  447 (602)
Q Consensus       373 ~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg----~i~iwd~~~-~~~~~~~~~~~~  447 (602)
                                                       .+....|++++.+|++++.|+    .|+|||+++ .+++..+..+  
T Consensus       216 ---------------------------------~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld--  260 (568)
T PTZ00420        216 ---------------------------------NIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSID--  260 (568)
T ss_pred             ---------------------------------EEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEec--
Confidence                                             122335678999999988774    799999985 3444333211  


Q ss_pred             cEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCcee--eeecccCCCe
Q psy12697        448 EIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCE--QQFSFHSAPA  525 (602)
Q Consensus       448 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~~~~~~~--~~~~~~~~~v  525 (602)
                                                    .+.+.+......++|.++++|+.|+.|++|++..+...  ..+. +..+.
T Consensus       261 ------------------------------~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~~~~l~~~~-s~~p~  309 (568)
T PTZ00420        261 ------------------------------NASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLGSIRKVNEYK-SCSPF  309 (568)
T ss_pred             ------------------------------CCccceEEeeeCCCCCEEEEEECCCeEEEEEccCCcEEeecccc-cCCCc
Confidence                                          12222333333456889999999999999999876432  2222 56788


Q ss_pred             eEeeecCCc
Q psy12697        526 LDVDWQSNT  534 (602)
Q Consensus       526 ~~~~~s~~~  534 (602)
                      .+++|.|..
T Consensus       310 ~g~~f~Pkr  318 (568)
T PTZ00420        310 RSFGFLPKQ  318 (568)
T ss_pred             cceEEcccc
Confidence            899999975

>KOG2096|consensus

Probab=99.96  E-value=4.4e-27  Score=199.88  Aligned_cols=290  Identities=18%  Similarity=0.252  Sum_probs=199.1

Q ss_pred             eEeeCCCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEeeCCCCCeE
Q psy12697        216 TKLIGHESEVFICAWNPVKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFL  295 (602)
Q Consensus       216 ~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l  295 (602)
                      ..|.+|...|++++|+.||++|++++.|++|++|++++........+...         .+   -+..+.+.|.||-+-+
T Consensus        80 ~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~n---------ve---~dhpT~V~FapDc~s~  147 (420)
T KOG2096|consen   80 SVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQN---------VE---YDHPTRVVFAPDCKSV  147 (420)
T ss_pred             hhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhcc---------cc---CCCceEEEECCCcceE
Confidence            56889999999999999999999999999999999987544322111111         11   2357899999998777


Q ss_pred             EEEeCC-CeEEEEcCC----Cccee---------ecccccCCeEEEEEccCCCEEEEEecCCcEEEEeCCCCceeEEeee
Q psy12697        296 ATGSYD-GYARIWTSD----GSLKS---------TLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSF  361 (602)
Q Consensus       296 ~~~~~d-g~i~i~~~~----~~~~~---------~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~  361 (602)
                      ++.... ..+++|.+.    |....         .-..|...+..+-...++.+|++++.|..|.+|+++ |+.+.    
T Consensus       148 vv~~~~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~----  222 (420)
T KOG2096|consen  148 VVSVKRGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQ----  222 (420)
T ss_pred             EEEEccCCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceee----
Confidence            665544 578888743    21111         112344555556556666777777777777777766 44443    


Q ss_pred             ccCCeeeeeccCCCeEEEeeCCCeEEEEEcCCCceeeEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeeeEe
Q psy12697        362 HSAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHD  441 (602)
Q Consensus       362 ~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~  441 (602)
                                                           .+......-...+.||+|+++++++-.-.|++|.+--     .
T Consensus       223 -------------------------------------~idtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f-----~  260 (420)
T KOG2096|consen  223 -------------------------------------SIDTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIF-----T  260 (420)
T ss_pred             -------------------------------------eeccccccccceeeCCCCcEEEEecCCCCceEEEEEe-----c
Confidence                                                 3333333455678999999999999988899997521     1


Q ss_pred             eccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCC-------ce
Q psy12697        442 LQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASG-------QC  514 (602)
Q Consensus       442 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~~~~-------~~  514 (602)
                      -.+.-..+                     .....+.+|.+.|..++||++...+++.+.||+++|||..-.       +.
T Consensus       261 kdG~fqev---------------------~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~  319 (420)
T KOG2096|consen  261 KDGTFQEV---------------------KRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKI  319 (420)
T ss_pred             cCcchhhh---------------------hhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCchH
Confidence            11100000                     011246789999999999999999999999999999997532       22


Q ss_pred             eeee----cccCCCeeEeeecCCceEEEeeCCCcEEEeecCCCCceeeeecccccceEEEEecCCcEEEEEECCCCCeEE
Q psy12697        515 EQQF----SFHSAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEGHTTGQLVHSYKGTGGIFEVCWNSRGDKVG  590 (602)
Q Consensus       515 ~~~~----~~~~~~v~~~~~s~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~  590 (602)
                      +.+.    ....+.-..+..+|+|.+++.+....++++..++++..-.++.-          +.+.|.+++|++||++++
T Consensus       320 Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~gs~l~~~~se~g~~~~~~e~~----------h~~~Is~is~~~~g~~~a  389 (420)
T KOG2096|consen  320 LKEGSAPLHAAGSEPVRLELSPSGDSLAVSFGSDLKVFASEDGKDYPELEDI----------HSTTISSISYSSDGKYIA  389 (420)
T ss_pred             hhcCCcchhhcCCCceEEEeCCCCcEEEeecCCceEEEEcccCccchhHHHh----------hcCceeeEEecCCCcEEe
Confidence            2222    11222344899999996666667778999998877655544432          136799999999999999


Q ss_pred             EeccC
Q psy12697        591 ASASD  595 (602)
Q Consensus       591 ~~~~d  595 (602)
                      ++++.
T Consensus       390 tcGdr  394 (420)
T KOG2096|consen  390 TCGDR  394 (420)
T ss_pred             eecce
Confidence            88764

>KOG0308|consensus

Probab=99.96  E-value=9.8e-28  Score=222.80  Aligned_cols=326  Identities=19%  Similarity=0.296  Sum_probs=248.9

Q ss_pred             CCCCEEEEeeCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEeeCCCCCeEEEEeCCCeEEEEcCCC
Q psy12697        232 PVKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFLATGSYDGYARIWTSDG  311 (602)
Q Consensus       232 ~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~  311 (602)
                      |.+++|++|++||.|++|++..........          .......|...|..++...+++.|++++.|-+|++|+...
T Consensus        35 ~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~----------~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~  104 (735)
T KOG0308|consen   35 PNGRYLFTGGRDGIIRLWSVTQDSNEPSTP----------YIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHK  104 (735)
T ss_pred             CCCceEEecCCCceEEEeccccccCCcccc----------hhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeeccc
Confidence            356789999999999999987654432111          0112334678899999999999999999999999999763


Q ss_pred             ---cceeecccccCCeEEEEE-ccCCCEEEEEecCCcEEEEeCCCCce--eEE--------ee-eccCCeeeeeccCCCe
Q psy12697        312 ---SLKSTLGQHKGPIFALKW-NKRGNYILSAGVDKTTIIWDAASGQC--EQQ--------FS-FHSAPALDVDWQSNTS  376 (602)
Q Consensus       312 ---~~~~~~~~~~~~i~~~~~-~~~~~~l~~~~~dg~i~~wd~~~~~~--~~~--------~~-~~~~~~~~~~~~~~~~  376 (602)
                         ....++..|...|.|+++ -++...+++||.|+.|.+||+.++..  +..        +. ++..++.+++..+.+.
T Consensus       105 ~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t  184 (735)
T KOG0308|consen  105 DNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGT  184 (735)
T ss_pred             CcchhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcce
Confidence               467788899999999999 77888999999999999999998732  222        22 5566788888887754


Q ss_pred             -EEEeeCCCeEEEEEcCCCceeeEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeeeEeeccccccEEEEEEC
Q psy12697        377 -FASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHDLQAHNKEIYTIKWS  455 (602)
Q Consensus       377 -~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~  455 (602)
                       ++.|+.++.+++||.++.+.+..++||...|..+..++||..++++|.||+|++||+...+++.++..|...+.++.  
T Consensus       185 ~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~--  262 (735)
T KOG0308|consen  185 IIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQ--  262 (735)
T ss_pred             EEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccCceEEEe--
Confidence             77888999999999999999999999999999999999999999999999999999999999999887766555554  


Q ss_pred             CCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeeecccCCCeeEeeecCCc-
Q psy12697        456 PTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNT-  534 (602)
Q Consensus       456 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~-  534 (602)
                                                      .+|+-..+.+|+.||.|..=|+.+......+-....+|..+..+... 
T Consensus       263 --------------------------------~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tlick~daPv~~l~~~~~~~  310 (735)
T KOG0308|consen  263 --------------------------------SSPSFTHVYSGGRDGNIYRTDLRNPAKSTLICKEDAPVLKLHLHEHDN  310 (735)
T ss_pred             --------------------------------eCCCcceEEecCCCCcEEecccCCchhheEeecCCCchhhhhhccccC
Confidence                                            44566789999999999999999853333333366788888887555 


Q ss_pred             eEEEeeCCCcEEEeecCCCCceeeeec---ccc----------cceEEEEecCCcEEEEEECCCCCeEEEeccCCeEEee
Q psy12697        535 SFASCSTDQHIHVCKLHSDKPVKSFEG---HTT----------GQLVHSYKGTGGIFEVCWNSRGDKVGASASDGSVFKN  601 (602)
Q Consensus       535 ~l~~~~~d~~i~iw~~~~~~~~~~~~~---~~~----------~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~v~i~  601 (602)
                      .+-+++.|+.|+-|...-.-.+.....   +.+          ...-..+++..+|..-+.-.|.+++++-...|.+.++
T Consensus       311 ~~WvtTtds~I~rW~~~~~~~l~~s~~~~~~~T~~~~~~~~~~~tp~~vi~Gg~ai~k~~mL~dkRhVlTkDa~gnv~lw  390 (735)
T KOG0308|consen  311 SVWVTTTDSSIKRWKLEPDIALSVSGDLDFFSTDSNNHSCDLTNTPDSVIPGGAAIKKHAMLNDKRHVLTKDAKGNVALW  390 (735)
T ss_pred             CceeeeccccceecCCccccccccCCCCCcccccCCCccccccCCCceeccCchhhhhhhhhcCcceEeeecCCCCEEEE
Confidence            557778899999998764322111110   000          0111223344455556666788899998888887653

>KOG4283|consensus

Probab=99.96  E-value=1.5e-26  Score=194.56  Aligned_cols=316  Identities=18%  Similarity=0.311  Sum_probs=229.9

Q ss_pred             eeccCCceEEEEECC-CCCeEEEeeCCceEEEEecCCceeEEEeeccCceEEEEeCCCCCCCCCCCCccccccccccCCc
Q psy12697        136 LTRHTEPVYSVAFSP-DGKFLASGSFDKCVHIWSARTGQLVHSYKGTGGIFEVCWNSRGTPPNPPESMEVDASIEIPQSK  214 (602)
Q Consensus       136 l~~h~~~V~~~~~s~-d~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  214 (602)
                      .+.|.+.|+++...+ .|+|+++|+.||.|.|||++.......-   +-+.                   ... .+  -.
T Consensus        39 ~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s---~li~-------------------k~~-c~--v~   93 (397)
T KOG4283|consen   39 VRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEAS---GLIA-------------------KHK-CI--VA   93 (397)
T ss_pred             eccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhc---ccee-------------------hee-ee--cc
Confidence            356899999999998 8999999999999999999764311000   0000                   000 00  00


Q ss_pred             ceEeeCCCcceEEEEEcCC-CCEEEEeeCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEeeCCC--
Q psy12697        215 ATKLIGHESEVFICAWNPV-KDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNN--  291 (602)
Q Consensus       215 ~~~l~~h~~~v~~~~~~~~-~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--  291 (602)
                      ...-.+|...|..+.|-|- ...+.+++-|.++++||..+.+....+..                 .+.|.+-+++|-  
T Consensus        94 ~~h~~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ~a~~F~m-----------------e~~VYshamSp~a~  156 (397)
T KOG4283|consen   94 KQHENGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQEAVDFKM-----------------EGKVYSHAMSPMAM  156 (397)
T ss_pred             ccCCccceeeeeeeEEeeecCceeecccccceEEEeecccceeeEEeec-----------------CceeehhhcChhhh
Confidence            1223478999999999994 46788889999999999988664322221                 466888888883  


Q ss_pred             -CCeEEEEeCCCeEEEEcCC-CcceeecccccCCeEEEEEccCCCEE-EEEecCCcEEEEeCCCCceeEEeeeccCCeee
Q psy12697        292 -GSFLATGSYDGYARIWTSD-GSLKSTLGQHKGPIFALKWNKRGNYI-LSAGVDKTTIIWDAASGQCEQQFSFHSAPALD  368 (602)
Q Consensus       292 -~~~l~~~~~dg~i~i~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l-~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~  368 (602)
                       -.++|+|..+-.|++.|+. |.....+.+|.+.|.++.|+|...++ ++|+.||.+++||++.-               
T Consensus       157 sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRra---------------  221 (397)
T KOG4283|consen  157 SHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRA---------------  221 (397)
T ss_pred             cceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecc---------------
Confidence             4578889999999999987 78889999999999999999988874 58899999999999853               


Q ss_pred             eeccCCCeEEEeeCCCeEEEEEcCCCce---eeEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeeeEeeccc
Q psy12697        369 VDWQSNTSFASCSTDQHIHVCKLHSDKP---VKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHDLQAH  445 (602)
Q Consensus       369 ~~~~~~~~~~~~~~~~~i~i~d~~~~~~---~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~  445 (602)
                                    .|..++.|..+++.   ++.-..|.+.+..++|+.++.++++++.|..+++|+..+|+....-.+.
T Consensus       222 --------------sgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~ntl~~~g~  287 (397)
T KOG4283|consen  222 --------------SGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGRNTLREFGP  287 (397)
T ss_pred             --------------cceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeecccCccccccccc
Confidence                          12333344433221   2334578999999999999999999999999999999887543221110


Q ss_pred             cccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeeecccCCCe
Q psy12697        446 NKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPA  525 (602)
Q Consensus       446 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v  525 (602)
                        .+..-                          ..+.-..+. +.+...++---.++.+.++++-.+..+..+..|-..+
T Consensus       288 --~~~n~--------------------------~~~~~~~~~-~~~s~vfv~~p~~~~lall~~~sgs~ir~l~~h~k~i  338 (397)
T KOG4283|consen  288 --IIHNQ--------------------------TTSFAVHIQ-SMDSDVFVLFPNDGSLALLNLLEGSFVRRLSTHLKRI  338 (397)
T ss_pred             --ccccc--------------------------cccceEEEe-ecccceEEEEecCCeEEEEEccCceEEEeeeccccee
Confidence              00000                          000000011 2233445555567889999999999999999998889


Q ss_pred             eEeeecCCc-eEEEeeCCCcEEEeecC
Q psy12697        526 LDVDWQSNT-SFASCSTDQHIHVCKLH  551 (602)
Q Consensus       526 ~~~~~s~~~-~l~~~~~d~~i~iw~~~  551 (602)
                      .+.++-|+- ...++..|+.|..|-..
T Consensus       339 ~c~~~~~~fq~~~tg~~d~ni~~w~p~  365 (397)
T KOG4283|consen  339 NCAAYRPDFEQCFTGDMNGNIYMWSPA  365 (397)
T ss_pred             eEEeecCchhhhhccccCCcccccccc
Confidence            999999988 89999999999999863

>KOG0639|consensus

Probab=99.96  E-value=2.6e-27  Score=213.20  Aligned_cols=283  Identities=18%  Similarity=0.297  Sum_probs=233.5

Q ss_pred             eCCCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEeeCCCCCeEEEE
Q psy12697        219 IGHESEVFICAWNPVKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFLATG  298 (602)
Q Consensus       219 ~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~  298 (602)
                      ..|..-|.++..+...+++++|+. |.|+|||+.......+.....    |       ......|.++...|||+.|++|
T Consensus       416 L~HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k~PvsqLd----c-------l~rdnyiRSckL~pdgrtLivG  483 (705)
T KOG0639|consen  416 LAHGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGNKSPVSQLD----C-------LNRDNYIRSCKLLPDGRTLIVG  483 (705)
T ss_pred             hccCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCCCCcccccc----c-------cCcccceeeeEecCCCceEEec
Confidence            468888999999999999999876 789999998764432221110    1       1124679999999999999999


Q ss_pred             eCCCeEEEEcCCCcce---eecccccCCeEEEEEccCCCEEEEEecCCcEEEEeCCCCceeEEeeeccCCeeeeeccCCC
Q psy12697        299 SYDGYARIWTSDGSLK---STLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNT  375 (602)
Q Consensus       299 ~~dg~i~i~~~~~~~~---~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~  375 (602)
                      +.-.++.|||+.....   ..+....-....++.+||.+..+++..||.|.|||+.+...++.+++|...+.|+..++++
T Consensus       484 GeastlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dG  563 (705)
T KOG0639|consen  484 GEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDG  563 (705)
T ss_pred             cccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCC
Confidence            9999999999874332   2333333456788999999999999999999999999999999999999999999999875


Q ss_pred             -eEEEeeCCCeEEEEEcCCCceeeEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeeeEeeccccccEEEEEE
Q psy12697        376 -SFASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHDLQAHNKEIYTIKW  454 (602)
Q Consensus       376 -~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~  454 (602)
                       .+-+|+-|++|+.||+++++.+.... ....|.++..+|++.+|++|-.++.+.+......+ .+              
T Consensus       564 tklWTGGlDntvRcWDlregrqlqqhd-F~SQIfSLg~cP~~dWlavGMens~vevlh~skp~-ky--------------  627 (705)
T KOG0639|consen  564 TKLWTGGLDNTVRCWDLREGRQLQQHD-FSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPE-KY--------------  627 (705)
T ss_pred             ceeecCCCccceeehhhhhhhhhhhhh-hhhhheecccCCCccceeeecccCcEEEEecCCcc-ce--------------
Confidence             59999999999999999987665543 45679999999999999999999988887754322 12              


Q ss_pred             CCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeeecccCCCeeEeeecCCc
Q psy12697        455 SPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNT  534 (602)
Q Consensus       455 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~  534 (602)
                                          .+..|++.|.++.|++.|+++++.+.|..+..|...-|..+...+ ..++|.++.+|.|.
T Consensus       628 --------------------qlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqsk-E~SsVlsCDIS~dd  686 (705)
T KOG0639|consen  628 --------------------QLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK-ESSSVLSCDISFDD  686 (705)
T ss_pred             --------------------eecccccEEEEEEecccCceeeecCchhhhhhccCccccceeecc-ccCcceeeeeccCc
Confidence                                233477888888899999999999999999999999998887776 57789999999999


Q ss_pred             -eEEEeeCCCcEEEeec
Q psy12697        535 -SFASCSTDQHIHVCKL  550 (602)
Q Consensus       535 -~l~~~~~d~~i~iw~~  550 (602)
                       ++++|+.|+...||.+
T Consensus       687 kyIVTGSGdkkATVYeV  703 (705)
T KOG0639|consen  687 KYIVTGSGDKKATVYEV  703 (705)
T ss_pred             eEEEecCCCcceEEEEE
Confidence             9999999999998874

>KOG0646|consensus

Probab=99.96  E-value=8.1e-27  Score=208.60  Aligned_cols=282  Identities=19%  Similarity=0.258  Sum_probs=218.2

Q ss_pred             CEEEEeeC-CCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEeeCCCCCeEEEEeCCCeEEEEcCC-Cc
Q psy12697        235 DFLASGSG-DSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFLATGSYDGYARIWTSD-GS  312 (602)
Q Consensus       235 ~~l~s~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~-~~  312 (602)
                      .+++++.. ...+.+|.+.........                .-..+++.+++-+|+|.+++.|+..|.+++|.+. |.
T Consensus        51 ~yllsaq~~rp~l~vw~i~k~~~~~q~----------------~v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~  114 (476)
T KOG0646|consen   51 EYLLSAQLKRPLLHVWEILKKDQVVQY----------------IVLPGPVHALASSNLGYFLLAGTISGNLYLWELSSGI  114 (476)
T ss_pred             hheeeecccCccccccccCchhhhhhh----------------cccccceeeeecCCCceEEEeecccCcEEEEEecccc
Confidence            45555543 457889988755433210                0114789999999999999999999999999987 88


Q ss_pred             ceeecccccCCeEEEEEccCCCEEEEEecCCcEEEEeCC---------CCceeEEeeeccCCeeeeeccCC---CeEEEe
Q psy12697        313 LKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAA---------SGQCEQQFSFHSAPALDVDWQSN---TSFASC  380 (602)
Q Consensus       313 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~---------~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~  380 (602)
                      ++..+..|-..|+++.|+.||.+|++|+.||.|.+|++.         +-+....+..|.-+|+++...++   .+++++
T Consensus       115 LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~Ta  194 (476)
T KOG0646|consen  115 LLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTA  194 (476)
T ss_pred             HHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEe
Confidence            888899999999999999999999999999999999764         23566778889999999887665   679999


Q ss_pred             eCCCeEEEEEcCCCceeeEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeeeEeeccccccEEEEEECCCCCC
Q psy12697        381 STDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHDLQAHNKEIYTIKWSPTGPE  460 (602)
Q Consensus       381 ~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~  460 (602)
                      +.|.++++||+..+..+.++. ....+.+++++|-++.+.+|+.+|.|.+.++......      ...+..=.+++.   
T Consensus       195 S~D~t~k~wdlS~g~LLlti~-fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~------~~~v~~k~~~~~---  264 (476)
T KOG0646|consen  195 SEDRTIKLWDLSLGVLLLTIT-FPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQ------SAGVNQKGRHEE---  264 (476)
T ss_pred             cCCceEEEEEeccceeeEEEe-cCCcceeEEEcccccEEEecCCcceEEeeehhcCCcc------cccccccccccc---
Confidence            999999999999999887776 5567999999999999999999999999887643210      000100011111   


Q ss_pred             CCCCCcceeeeeeeccCCccC--CeEEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeeecccCCCeeEeeecCCc--eE
Q psy12697        461 TSNPNMSLIFILKSTLGQHKG--PIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNT--SF  536 (602)
Q Consensus       461 ~~~~~~~~~~~~~~~~~~~~~--~v~~i~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~--~l  536 (602)
                               ......+.+|.+  .|+|++++-||.+|++|+.||.|+|||+.+.++++++....++|+.+.+.|-.  .+
T Consensus       265 ---------~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~~~kgpVtnL~i~~~~~~~~  335 (476)
T KOG0646|consen  265 ---------NTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQTSKGPVTNLQINPLERGII  335 (476)
T ss_pred             ---------cceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHHHhhhccccceeEeecccccee
Confidence                     111234556776  99999999999999999999999999999999999998778899999996644  33


Q ss_pred             EEeeCCCcEEEeecC
Q psy12697        537 ASCSTDQHIHVCKLH  551 (602)
Q Consensus       537 ~~~~~d~~i~iw~~~  551 (602)
                      ..-.....+..|++.
T Consensus       336 l~~~~~ps~~~~~lk  350 (476)
T KOG0646|consen  336 LFEHKQPSLPNPHLK  350 (476)
T ss_pred             cccccCccCCchHhh
Confidence            333344445555543

>KOG0650|consensus

Probab=99.96  E-value=1.1e-26  Score=213.86  Aligned_cols=313  Identities=23%  Similarity=0.353  Sum_probs=237.1

Q ss_pred             eeeeeeeccCCceEEEEECCCCCeEEEeeCCceEEEEecCCceeEEEeeccCceEEEEeCCCCCCCCCCCCccccccccc
Q psy12697        131 ECLNTLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKGTGGIFEVCWNSRGTPPNPPESMEVDASIEI  210 (602)
Q Consensus       131 ~~~~~l~~h~~~V~~~~~s~d~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (602)
                      .+-..++||++.|.|+...|.|.+||+|+.||+|+||.+.+|.+++.+..                              
T Consensus       391 ~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~------------------------------  440 (733)
T KOG0650|consen  391 RCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQF------------------------------  440 (733)
T ss_pred             eeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEee------------------------------
Confidence            34456789999999999999999999999999999999999999987653                              


Q ss_pred             cCCcceEeeCCCcceEEEEEcCCCC--EEEEeeCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEee
Q psy12697        211 PQSKATKLIGHESEVFICAWNPVKD--FLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDW  288 (602)
Q Consensus       211 ~~~~~~~l~~h~~~v~~~~~~~~~~--~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  288 (602)
                                 .+.|.+++|+|.++  .||++-. ..+.|-+..-+........                          
T Consensus       441 -----------d~~I~~vaw~P~~~~~vLAvA~~-~~~~ivnp~~G~~~e~~~t--------------------------  482 (733)
T KOG0650|consen  441 -----------DSEIRSVAWNPLSDLCVLAVAVG-ECVLIVNPIFGDRLEVGPT--------------------------  482 (733)
T ss_pred             -----------cceeEEEEecCCCCceeEEEEec-CceEEeCccccchhhhcch--------------------------
Confidence                       44688888888763  3444443 3355555433321111000                          


Q ss_pred             CCCCCeEEEE----eCCCeEEEEcCC-----CcceeecccccCCeEEEEEccCCCEEEEEecC---CcEEEEeCCCCcee
Q psy12697        289 NNNGSFLATG----SYDGYARIWTSD-----GSLKSTLGQHKGPIFALKWNKRGNYILSAGVD---KTTIIWDAASGQCE  356 (602)
Q Consensus       289 ~~~~~~l~~~----~~dg~i~i~~~~-----~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---g~i~~wd~~~~~~~  356 (602)
                         ...|+.+    ..++.+..|...     ..-+.....|...|..+.|+..|.||++...+   ..|.|.++......
T Consensus       483 ---~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~sQ  559 (733)
T KOG0650|consen  483 ---KELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRKSQ  559 (733)
T ss_pred             ---hhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEEEeccccccc
Confidence               0111111    223456677633     11134455689999999999999999987653   57889999888777


Q ss_pred             EEeeeccCCeeeeeccCCCeEEEeeCCCeEEEEEcCCCceeeEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCC
Q psy12697        357 QQFSFHSAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKD  436 (602)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~  436 (602)
                      ..+....+.+.++.|+|....+..+....|++||+.....++++......|..++++|.|.-|+.|+.|+.+..||+.-.
T Consensus       560 ~PF~kskG~vq~v~FHPs~p~lfVaTq~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~gs~d~k~~WfDldls  639 (733)
T KOG0650|consen  560 SPFRKSKGLVQRVKFHPSKPYLFVATQRSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLS  639 (733)
T ss_pred             CchhhcCCceeEEEecCCCceEEEEeccceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEEecCCCeeEEEEcccC
Confidence            77777888899999999988777788899999999998888888878888999999999999999999999999999754


Q ss_pred             -eeeEeeccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCCCeEEEEeCC-----
Q psy12697        437 -NCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAA-----  510 (602)
Q Consensus       437 -~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~~-----  510 (602)
                       ++.+++..|..                                  .+++++|++.-.++++|+.||++.|+.-.     
T Consensus       640 skPyk~lr~H~~----------------------------------avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl  685 (733)
T KOG0650|consen  640 SKPYKTLRLHEK----------------------------------AVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDL  685 (733)
T ss_pred             cchhHHhhhhhh----------------------------------hhhhhhhccccceeeeecCCCcEEEEeeeeehhh
Confidence             45555555544                                  44555555566689999999999998522     


Q ss_pred             -CC---ceeeeecccCCC----eeEeeecCCc-eEEEeeCCCcEEEe
Q psy12697        511 -SG---QCEQQFSFHSAP----ALDVDWQSNT-SFASCSTDQHIHVC  548 (602)
Q Consensus       511 -~~---~~~~~~~~~~~~----v~~~~~s~~~-~l~~~~~d~~i~iw  548 (602)
                       ..   -++..+.+|...    |..+.|+|.. +|++++.||+|++|
T Consensus       686 ~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf  732 (733)
T KOG0650|consen  686 LQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF  732 (733)
T ss_pred             hcCCceEeeeeccCceeecccceEeecccCCCceEEecCCCceEEee
Confidence             11   234677788765    9999999999 99999999999998

>KOG1332|consensus

Probab=99.95  E-value=3.4e-27  Score=193.07  Aligned_cols=247  Identities=26%  Similarity=0.412  Sum_probs=201.8

Q ss_pred             eccCCceEEEEECCCCCeEEEeeCCceEEEEecCCceeEEEeeccCceEEEEeCCCCCCCCCCCCccccccccccCCcce
Q psy12697        137 TRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKGTGGIFEVCWNSRGTPPNPPESMEVDASIEIPQSKAT  216 (602)
Q Consensus       137 ~~h~~~V~~~~~s~d~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  216 (602)
                      ..|.+.|..+...--|+.|||++.|++|+|+..+......                                     ...
T Consensus         8 t~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~-------------------------------------ll~   50 (299)
T KOG1332|consen    8 TQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSK-------------------------------------LLA   50 (299)
T ss_pred             hhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCce-------------------------------------eee
Confidence            5699999999999999999999999999999987654321                                     126


Q ss_pred             EeeCCCcceEEEEEcC--CCCEEEEeeCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEeeCCC--C
Q psy12697        217 KLIGHESEVFICAWNP--VKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNN--G  292 (602)
Q Consensus       217 ~l~~h~~~v~~~~~~~--~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~  292 (602)
                      .|.||.++|+.++|..  .|.+||+++.||.|.||.-+++.-....              ....|...|++++|.|.  |
T Consensus        51 ~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~~--------------e~~~h~~SVNsV~wapheyg  116 (299)
T KOG1332|consen   51 ELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTKAY--------------EHAAHSASVNSVAWAPHEYG  116 (299)
T ss_pred             EecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCchhhhh--------------hhhhhcccceeecccccccc
Confidence            7889999999999976  7899999999999999998877432211              22346788999999994  6


Q ss_pred             CeEEEEeCCCeEEEEcCCCc----ceeecccccCCeEEEEEccC---C-----------CEEEEEecCCcEEEEeCCCCc
Q psy12697        293 SFLATGSYDGYARIWTSDGS----LKSTLGQHKGPIFALKWNKR---G-----------NYILSAGVDKTTIIWDAASGQ  354 (602)
Q Consensus       293 ~~l~~~~~dg~i~i~~~~~~----~~~~~~~~~~~i~~~~~~~~---~-----------~~l~~~~~dg~i~~wd~~~~~  354 (602)
                      -.|++++.||.|.+.+.+..    .......|.-.|++++|.|.   |           +.|++|+.|..|+||+..+++
T Consensus       117 l~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~  196 (299)
T KOG1332|consen  117 LLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDS  196 (299)
T ss_pred             eEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcc
Confidence            78999999999999986633    33456689999999999986   4           569999999999999988763


Q ss_pred             --eeEEeeeccCCeeeeeccCC-----CeEEEeeCCCeEEEEEcCCC-c--eeeEeccCCCCeEEEEECCCCCEEEEEEC
Q psy12697        355 --CEQQFSFHSAPALDVDWQSN-----TSFASCSTDQHIHVCKLHSD-K--PVKSFEGHTNEVNAIKWDPQGLLLASCSD  424 (602)
Q Consensus       355 --~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~i~i~d~~~~-~--~~~~~~~~~~~i~~~~~~~~~~~l~~~~~  424 (602)
                        ....+..|..-+.+++|.|.     ..+++++.||++.||..... +  ....+......+..+.||+.|+.|++++.
T Consensus       197 w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~G  276 (299)
T KOG1332|consen  197 WKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGG  276 (299)
T ss_pred             hhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCcccccccccCCcceEEEEEeccccEEEEecC
Confidence              34458889999999999886     45999999999999987632 1  12233445677999999999999999999


Q ss_pred             CCeEEEEeCC
Q psy12697        425 DMTLKIWSLD  434 (602)
Q Consensus       425 dg~i~iwd~~  434 (602)
                      |+.|.+|.-.
T Consensus       277 dNkvtlwke~  286 (299)
T KOG1332|consen  277 DNKVTLWKEN  286 (299)
T ss_pred             CcEEEEEEeC
Confidence            9999999744

>KOG0639|consensus

Probab=99.95  E-value=3.3e-27  Score=212.58  Aligned_cols=274  Identities=18%  Similarity=0.297  Sum_probs=226.0

Q ss_pred             ccCCCCceeEEeeCCCCCeEEEEeCCCeEEEEcCCCc----ceeecc--cccCCeEEEEEccCCCEEEEEecCCcEEEEe
Q psy12697        276 EVPSNKDVTSLDWNNNGSFLATGSYDGYARIWTSDGS----LKSTLG--QHKGPIFALKWNKRGNYILSAGVDKTTIIWD  349 (602)
Q Consensus       276 ~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~----~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~dg~i~~wd  349 (602)
                      ...|..-|.++.++...+.+++|+. |.|+|||+.+.    .+..+.  .....|+++...|||+.|++|+.-.++.|||
T Consensus       415 tL~HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWD  493 (705)
T KOG0639|consen  415 TLAHGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWD  493 (705)
T ss_pred             hhccCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeee
Confidence            3456777888999999999998875 77999998743    222222  2456799999999999999999999999999


Q ss_pred             CCCCceeEEeeecc--CCeeeeeccCCCe-EEEeeCCCeEEEEEcCCCceeeEeccCCCCeEEEEECCCCCEEEEEECCC
Q psy12697        350 AASGQCEQQFSFHS--APALDVDWQSNTS-FASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDM  426 (602)
Q Consensus       350 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg  426 (602)
                      +.............  .....++.+|+.. .+++..||.|.|||+.+...++.|++|.+.+.||.+++||..|.+|+-|+
T Consensus       494 LAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlDn  573 (705)
T KOG0639|consen  494 LAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDN  573 (705)
T ss_pred             ccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecCCCcc
Confidence            98765544333333  4566778888854 67888999999999999999999999999999999999999999999999


Q ss_pred             eEEEEeCCCCeeeEeeccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCCCeEEE
Q psy12697        427 TLKIWSLDKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTII  506 (602)
Q Consensus       427 ~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~i  506 (602)
                      +||.||++.++.+....                                   ..+.|.++..+|++.+|+.|-.++.+.|
T Consensus       574 tvRcWDlregrqlqqhd-----------------------------------F~SQIfSLg~cP~~dWlavGMens~vev  618 (705)
T KOG0639|consen  574 TVRCWDLREGRQLQQHD-----------------------------------FSSQIFSLGYCPTGDWLAVGMENSNVEV  618 (705)
T ss_pred             ceeehhhhhhhhhhhhh-----------------------------------hhhhheecccCCCccceeeecccCcEEE
Confidence            99999999887654322                                   2456777888889999999999999998


Q ss_pred             EeCCCCceeeeecccCCCeeEeeecCCc-eEEEeeCCCcEEEeecCCCCceeeeecccccceEEEEecCCcEEEEEECCC
Q psy12697        507 WDAASGQCEQQFSFHSAPALDVDWQSNT-SFASCSTDQHIHVCKLHSDKPVKSFEGHTTGQLVHSYKGTGGIFEVCWNSR  585 (602)
Q Consensus       507 wd~~~~~~~~~~~~~~~~v~~~~~s~~~-~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd  585 (602)
                      -... +.....+..|.+.|.++.|++.| ++++.+.|+-+..|..            ..|..+...+....|.+...|-|
T Consensus       619 lh~s-kp~kyqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrt------------PyGasiFqskE~SsVlsCDIS~d  685 (705)
T KOG0639|consen  619 LHTS-KPEKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRT------------PYGASIFQSKESSSVLSCDISFD  685 (705)
T ss_pred             EecC-CccceeecccccEEEEEEecccCceeeecCchhhhhhccC------------ccccceeeccccCcceeeeeccC
Confidence            8865 44445666799999999999999 9999999999999994            45666666666788999999999


Q ss_pred             CCeEEEeccCCeE
Q psy12697        586 GDKVGASASDGSV  598 (602)
Q Consensus       586 g~~l~~~~~dg~v  598 (602)
                      .+++++|+.|...
T Consensus       686 dkyIVTGSGdkkA  698 (705)
T KOG0639|consen  686 DKYIVTGSGDKKA  698 (705)
T ss_pred             ceEEEecCCCcce
Confidence            9999999999654

>KOG0300|consensus

Probab=99.95  E-value=9.3e-27  Score=197.77  Aligned_cols=300  Identities=22%  Similarity=0.331  Sum_probs=222.9

Q ss_pred             cceeccceeeeecccceeeeeeeccCCceEEEEECCCCCeEEEeeCCceEEEEecCCceeEEEeeccCce---EEEEeCC
Q psy12697        115 EEVHRLTLPLWDVERGECLNTLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKGTGGI---FEVCWNS  191 (602)
Q Consensus       115 ~~~~~~~i~vwd~~~~~~~~~l~~h~~~V~~~~~s~d~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~---~~~~~~~  191 (602)
                      ....+.+-+||.+++|.|+.++.||.+.|+++.|++.+.++++++.|++..||...-.-.+-.-..+.+.   ....-+ 
T Consensus       165 tASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~s-  243 (481)
T KOG0300|consen  165 TASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHS-  243 (481)
T ss_pred             ecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcc-
Confidence            3345678999999999999999999999999999999999999999999999973211111000000000   000000 


Q ss_pred             CCCCCCCCCC-ccccccccccCCcceEeeCCCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCccceEEEEEEe
Q psy12697        192 RGTPPNPPES-MEVDASIEIPQSKATKLIGHESEVFICAWNPVKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCI  270 (602)
Q Consensus       192 ~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~  270 (602)
                      +......... ......+   ..+...+.+|.+.|.++.|...++.+++++.|.+..+||++++.....           
T Consensus       244 De~~~d~d~~~~sD~~ti---RvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~-----------  309 (481)
T KOG0300|consen  244 DEHNRDTDSSEKSDGHTI---RVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNI-----------  309 (481)
T ss_pred             cccccccccccccCCcee---eeeeeeeeccccceEehhhhcCcceeeeeeccccceeeeeccCceecc-----------
Confidence            0000000000 0000111   123467889999999999999999999999999999999999876532           


Q ss_pred             cCCCcccCCCCceeEEeeCCCCCeEEEEeCCCeEEEEcCCC--cceeecccccCCeEEEEEccCCCEEEEEecCCcEEEE
Q psy12697        271 SKGGTEVPSNKDVTSLDWNNNGSFLATGSYDGYARIWTSDG--SLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIW  348 (602)
Q Consensus       271 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~w  348 (602)
                           ...|....+.++-+|..+++++.+.|.+.++||.+.  ..+..+.+|...|+++.|..+. .+++++.|.+|++|
T Consensus       310 -----LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd-~vVSgSDDrTvKvW  383 (481)
T KOG0300|consen  310 -----LTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDD-RVVSGSDDRTVKVW  383 (481)
T ss_pred             -----ccCcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEecCC-ceeecCCCceEEEe
Confidence                 234567888899999999999999999999999873  4567789999999999998765 59999999999999


Q ss_pred             eCCCCceeEEeeeccCCeeeeeccCCCe-EEEeeCCCeEEEEEcCCCce----eeEeccCCCCeEEEEECCCC--CEEEE
Q psy12697        349 DAASGQCEQQFSFHSAPALDVDWQSNTS-FASCSTDQHIHVCKLHSDKP----VKSFEGHTNEVNAIKWDPQG--LLLAS  421 (602)
Q Consensus       349 d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~i~d~~~~~~----~~~~~~~~~~i~~~~~~~~~--~~l~~  421 (602)
                      |+++.+.....-....++..++.+.+.. ++.-..+..|++||++....    ....++|...|+|.+|..+.  .-|++
T Consensus       384 dLrNMRsplATIRtdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqgHrRMV~c~AW~eehp~cnLft  463 (481)
T KOG0300|consen  384 DLRNMRSPLATIRTDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLARLPRTSRQGHRRMVTCCAWLEEHPACNLFT  463 (481)
T ss_pred             eeccccCcceeeecCCccceeEeecCCceEEeccCCceEEEEecCCCccccCCcccccccceeeeeeeccccCccccccc
Confidence            9998765443334556777788877764 55566678899999987543    33557899999999998654  34788


Q ss_pred             EECCCeEEEEeCCC
Q psy12697        422 CSDDMTLKIWSLDK  435 (602)
Q Consensus       422 ~~~dg~i~iwd~~~  435 (602)
                      ++.|..+.-|.+..
T Consensus       464 cGFDR~v~gW~in~  477 (481)
T KOG0300|consen  464 CGFDRMVAGWKINT  477 (481)
T ss_pred             ccccceeeeeEecc
Confidence            99999999998764

>KOG0264|consensus

Probab=99.95  E-value=1.9e-26  Score=205.90  Aligned_cols=242  Identities=24%  Similarity=0.471  Sum_probs=199.0

Q ss_pred             cCCCCceeEEeeCCCC-CeEEEEeCCCeEEEEcCCC-----------cceeecccccCCeEEEEEccCCC-EEEEEecCC
Q psy12697        277 VPSNKDVTSLDWNNNG-SFLATGSYDGYARIWTSDG-----------SLKSTLGQHKGPIFALKWNKRGN-YILSAGVDK  343 (602)
Q Consensus       277 ~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~i~~~~~-----------~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg  343 (602)
                      +.|.+.|+.+..-|+. ..+++++..+.+.|||...           ....++.+|...-.+++|++... .|++++.|+
T Consensus       121 i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~  200 (422)
T KOG0264|consen  121 INHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDH  200 (422)
T ss_pred             ccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCC
Confidence            3467888899888855 5566778889999999541           11236778988888899998543 688999999


Q ss_pred             cEEEEeCCCCce-------eEEeeeccCCeeeeeccCC--CeEEEeeCCCeEEEEEcC--CCceeeEeccCCCCeEEEEE
Q psy12697        344 TTIIWDAASGQC-------EQQFSFHSAPALDVDWQSN--TSFASCSTDQHIHVCKLH--SDKPVKSFEGHTNEVNAIKW  412 (602)
Q Consensus       344 ~i~~wd~~~~~~-------~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~i~i~d~~--~~~~~~~~~~~~~~i~~~~~  412 (602)
                      .|++||+.....       ...+..|...+..++|.+-  ..|++++.|+.+.|||++  +.++.....+|..+|.|++|
T Consensus       201 ~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~f  280 (422)
T KOG0264|consen  201 TICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAF  280 (422)
T ss_pred             cEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEe
Confidence            999999975432       4467789999999999875  679999999999999999  66777888999999999999


Q ss_pred             CC-CCCEEEEEECCCeEEEEeCCCC-eeeEeeccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEcc
Q psy12697        413 DP-QGLLLASCSDDMTLKIWSLDKD-NCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNK  490 (602)
Q Consensus       413 ~~-~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~  490 (602)
                      +| ++..||+||.|++|.+||+++. .++.++.+|...|.++.|+|.                                 
T Consensus       281 np~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh---------------------------------  327 (422)
T KOG0264|consen  281 NPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPH---------------------------------  327 (422)
T ss_pred             CCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCC---------------------------------
Confidence            99 6778999999999999999975 456777777777777777765                                 


Q ss_pred             CCCEEEEEeCCCeEEEEeCCCC--------------ceeeeecccCCCeeEeeecCCc--eEEEeeCCCcEEEeecC
Q psy12697        491 RGNYILSAGVDKTTIIWDAASG--------------QCEQQFSFHSAPALDVDWQSNT--SFASCSTDQHIHVCKLH  551 (602)
Q Consensus       491 ~~~~l~s~~~dg~i~iwd~~~~--------------~~~~~~~~~~~~v~~~~~s~~~--~l~~~~~d~~i~iw~~~  551 (602)
                      ....||+++.|+.+.|||+..-              +++..-.+|...|..+.|+|+.  .|++.+.|+.+.||++.
T Consensus       328 ~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s  404 (422)
T KOG0264|consen  328 NETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMA  404 (422)
T ss_pred             CCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence            3467999999999999998642              2345666899999999999999  88999999999999974

>KOG4283|consensus

Probab=99.95  E-value=9.2e-26  Score=189.80  Aligned_cols=292  Identities=21%  Similarity=0.387  Sum_probs=221.7

Q ss_pred             cCCCCceeEEeeCC-CCCeEEEEeCCCeEEEEcCCCcc----------------eeecccccCCeEEEEEcc-CCCEEEE
Q psy12697        277 VPSNKDVTSLDWNN-NGSFLATGSYDGYARIWTSDGSL----------------KSTLGQHKGPIFALKWNK-RGNYILS  338 (602)
Q Consensus       277 ~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~~~~~~~----------------~~~~~~~~~~i~~~~~~~-~~~~l~~  338 (602)
                      .+|.+.|+++...+ .|+++++|+.||.|.+||++...                .....+|.-.|.++.|-| |.-.+.+
T Consensus        40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFts  119 (397)
T KOG4283|consen   40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTS  119 (397)
T ss_pred             ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeec
Confidence            45678899999988 78999999999999999976321                011235778899999998 4457788


Q ss_pred             EecCCcEEEEeCCCCceeEEeeeccCCeeeeeccCC----CeEEEeeCCCeEEEEEcCCCceeeEeccCCCCeEEEEECC
Q psy12697        339 AGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSN----TSFASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDP  414 (602)
Q Consensus       339 ~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~  414 (602)
                      ++.|.++++||..+.+....+.. +..|.+-+++|-    ..+++|..+-.|+++|+.+|..-..+.+|.+.|.++.|+|
T Consensus       120 sSFDhtlKVWDtnTlQ~a~~F~m-e~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp  198 (397)
T KOG4283|consen  120 SSFDHTLKVWDTNTLQEAVDFKM-EGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSP  198 (397)
T ss_pred             ccccceEEEeecccceeeEEeec-CceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEecc
Confidence            89999999999999887766653 345666677764    4478888899999999999999999999999999999999


Q ss_pred             CCC-EEEEEECCCeEEEEeCCCC-eeeEeeccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCC
Q psy12697        415 QGL-LLASCSDDMTLKIWSLDKD-NCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRG  492 (602)
Q Consensus       415 ~~~-~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~  492 (602)
                      ... .|++|+.||.|++||++.. .+...+..|+..-     .|               ....-..|.+.|..++|+.++
T Consensus       199 ~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~-----~p---------------~~~~n~ah~gkvngla~tSd~  258 (397)
T KOG4283|consen  199 SSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKR-----PP---------------ILKTNTAHYGKVNGLAWTSDA  258 (397)
T ss_pred             CceeEEEecCCCceEEEEEeecccceeEEeecccCcc-----Cc---------------cccccccccceeeeeeecccc
Confidence            765 5789999999999999865 6777777765410     01               011334689999999999999


Q ss_pred             CEEEEEeCCCeEEEEeCCCCceeeeecc---cCC---CeeEeeecCCc-eEEEeeCCCcEEEeecCCCCceeeeeccccc
Q psy12697        493 NYILSAGVDKTTIIWDAASGQCEQQFSF---HSA---PALDVDWQSNT-SFASCSTDQHIHVCKLHSDKPVKSFEGHTTG  565 (602)
Q Consensus       493 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~---~~~---~v~~~~~s~~~-~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~  565 (602)
                      .++++++.|..+++|+..+|+....-.+   |..   .-..+. +.+. .++---.++.+.++++-++..+..+..|.  
T Consensus       259 ~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~~~-~~~s~vfv~~p~~~~lall~~~sgs~ir~l~~h~--  335 (397)
T KOG4283|consen  259 RYLASCGTDDRIRVWNMESGRNTLREFGPIIHNQTTSFAVHIQ-SMDSDVFVLFPNDGSLALLNLLEGSFVRRLSTHL--  335 (397)
T ss_pred             hhhhhccCccceEEeecccCcccccccccccccccccceEEEe-ecccceEEEEecCCeEEEEEccCceEEEeeeccc--
Confidence            9999999999999999998864321111   111   111122 2222 34444455888888888888777777774  


Q ss_pred             ceEEEEecCCcEEEEEECCCCCeEEEeccCCeEEee
Q psy12697        566 QLVHSYKGTGGIFEVCWNSRGDKVGASASDGSVFKN  601 (602)
Q Consensus       566 ~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~v~i~  601 (602)
                               ..|.+.++.|+=+.+.++.-|+.+..+
T Consensus       336 ---------k~i~c~~~~~~fq~~~tg~~d~ni~~w  362 (397)
T KOG4283|consen  336 ---------KRINCAAYRPDFEQCFTGDMNGNIYMW  362 (397)
T ss_pred             ---------ceeeEEeecCchhhhhccccCCccccc
Confidence                     457788888888888888888887654

>KOG1963|consensus

Probab=99.95  E-value=1.8e-24  Score=208.94  Aligned_cols=442  Identities=18%  Similarity=0.293  Sum_probs=301.5

Q ss_pred             ccceeeeecccceeeeeeeccCCceEEEEECCCC---CeEEEeeCCceEEEEecCCceeEEEeeccCceEEEEeCCCCCC
Q psy12697        119 RLTLPLWDVERGECLNTLTRHTEPVYSVAFSPDG---KFLASGSFDKCVHIWSARTGQLVHSYKGTGGIFEVCWNSRGTP  195 (602)
Q Consensus       119 ~~~i~vwd~~~~~~~~~l~~h~~~V~~~~~s~d~---~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (602)
                      ...|.||...+|+++..|.+|..+++.+.+.|..   .++.+++.||.|++||...+.+++++....++..+.+.+.-..
T Consensus        36 ~~~V~VyS~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~~~~~~v~~~~~~~~~a~  115 (792)
T KOG1963|consen   36 GNFVKVYSTATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLKTFDNNLPVHALVYKPAQAD  115 (792)
T ss_pred             CCEEEEEecchHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEEEEecCCceeEEEechhHhC
Confidence            4689999999999999999999999999998854   4788999999999999999999999998888777766421110


Q ss_pred             ---CC--CCCCcccccc--ccc------------cCCcceEeeCCCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCC
Q psy12697        196 ---PN--PPESMEVDAS--IEI------------PQSKATKLIGHESEVFICAWNPVKDFLASGSGDSTARIWDMTDSTK  256 (602)
Q Consensus       196 ---~~--~~~~~~~~~~--~~~------------~~~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~  256 (602)
                         ..  ..........  ..+            ...+...+.+|.. -.++.+++.+.+....-. ..+.+|...... 
T Consensus       116 ~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~-~~~I~~~~~ge~~~i~~~-~~~~~~~v~~~~-  192 (792)
T KOG1963|consen  116 ISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQE-PKSIVDNNSGEFKGIVHM-CKIHIYFVPKHT-  192 (792)
T ss_pred             ccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcC-CccEEEcCCceEEEEEEe-eeEEEEEecccc-
Confidence               00  0000000000  000            0111111222322 456777777776655544 568888887654 


Q ss_pred             CCCccceEEEEEEecCCCcccCCCCceeEEeeCCCCCeEEEEeCCCeEEEEcCCC-----cceeecccccCCeEEEEEcc
Q psy12697        257 KDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFLATGSYDGYARIWTSDG-----SLKSTLGQHKGPIFALKWNK  331 (602)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~-----~~~~~~~~~~~~i~~~~~~~  331 (602)
                      ....           .......|...++|.+++|+++++|+|..||.|.+|.--+     .....+.=|..+|.++.|++
T Consensus       193 ~~~~-----------~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~  261 (792)
T KOG1963|consen  193 KHTS-----------SRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSS  261 (792)
T ss_pred             eeec-----------cchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEec
Confidence            1110           0112223455689999999999999999999999997433     33455666889999999999


Q ss_pred             CCCEEEEEecCCcEEEEeCCCCceeEEeeeccCCeeeeeccCCC-eEEEeeCCCeEEEEEcCCCceeeEecc--------
Q psy12697        332 RGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNT-SFASCSTDQHIHVCKLHSDKPVKSFEG--------  402 (602)
Q Consensus       332 ~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~i~d~~~~~~~~~~~~--------  402 (602)
                      +|.+|++|+.+|.+.+|.+.+++ .+-++.-..++..+.++|++ .+++...|+.|.+....+.....++.+        
T Consensus       262 ~G~~LlSGG~E~VLv~Wq~~T~~-kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~  340 (792)
T KOG1963|consen  262 DGAYLLSGGREGVLVLWQLETGK-KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPST  340 (792)
T ss_pred             CCceEeecccceEEEEEeecCCC-cccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccc
Confidence            99999999999999999999998 56667778899999999985 467788899999988765543333322        


Q ss_pred             ---CCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeeeEeeccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCc
Q psy12697        403 ---HTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQH  479 (602)
Q Consensus       403 ---~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  479 (602)
                         ..+-.+.++++|.-+.++-.+..|.|.+||+-+.+.+..++.-..     ..+++                  ...+
T Consensus       341 k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~-----n~~~~------------------~~n~  397 (792)
T KOG1963|consen  341 KTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDE-----NYSDG------------------DVNI  397 (792)
T ss_pred             cccccccceeEEEcCCCCceeecCCCceEEEEeccccceeeeEEEEee-----cccCC------------------ccee
Confidence               234477899999878888999999999999988776665542110     00000                  0024


Q ss_pred             cCCeEEEEEccCCCEEEEEeC--------C--CeEEEEeCCCCcee-----eeecccCCCeeEeeecCC--c-eEEEeeC
Q psy12697        480 KGPIFALKWNKRGNYILSAGV--------D--KTTIIWDAASGQCE-----QQFSFHSAPALDVDWQSN--T-SFASCST  541 (602)
Q Consensus       480 ~~~v~~i~~s~~~~~l~s~~~--------d--g~i~iwd~~~~~~~-----~~~~~~~~~v~~~~~s~~--~-~l~~~~~  541 (602)
                      .-.++.++.+..|.+++|.-.        |  -.+++|-......-     .....|...+...++.+.  . ..++++.
T Consensus       398 ~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~  477 (792)
T KOG1963|consen  398 QVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASV  477 (792)
T ss_pred             EEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEecc
Confidence            456778888888999998742        3  35788876543322     222347776666665432  3 8999999


Q ss_pred             CCcEEEeecCCCCceeeeecccccceEEEEecCCcEEEEEECCCCCeEEEeccCCeEEe
Q psy12697        542 DQHIHVCKLHSDKPVKSFEGHTTGQLVHSYKGTGGIFEVCWNSRGDKVGASASDGSVFK  600 (602)
Q Consensus       542 d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~v~i  600 (602)
                      ||.++||-+.+.+.+..-...-.-..+..+ ...++..++|+.||..|+++. |++|.|
T Consensus       478 dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy-~k~~i~a~~fs~dGslla~s~-~~~Iti  534 (792)
T KOG1963|consen  478 DGDFKIWVFTDDSNIYKKSSNWTCKAIGSY-HKTPITALCFSQDGSLLAVSF-DDTITI  534 (792)
T ss_pred             CCeEEEEEEecccccCcCccceEEeeeecc-ccCcccchhhcCCCcEEEEec-CCEEEE
Confidence            999999998655433221111111112222 357899999999998776655 444444

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.95  E-value=1.9e-24  Score=205.27  Aligned_cols=285  Identities=11%  Similarity=0.110  Sum_probs=206.0

Q ss_pred             CCeEEEeeCCceEEEEecCCceeEEEeeccCceEEEEeCCCCCCCCCCCCccccccccccCCcceEeeCCCcceEEEEEc
Q psy12697        152 GKFLASGSFDKCVHIWSARTGQLVHSYKGTGGIFEVCWNSRGTPPNPPESMEVDASIEIPQSKATKLIGHESEVFICAWN  231 (602)
Q Consensus       152 ~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~  231 (602)
                      ++++++++.|+.|++||+.+++.+..+.                                        .+ ..+..++|+
T Consensus         1 ~~~~~s~~~d~~v~~~d~~t~~~~~~~~----------------------------------------~~-~~~~~l~~~   39 (300)
T TIGR03866         1 EKAYVSNEKDNTISVIDTATLEVTRTFP----------------------------------------VG-QRPRGITLS   39 (300)
T ss_pred             CcEEEEecCCCEEEEEECCCCceEEEEE----------------------------------------CC-CCCCceEEC
Confidence            3578899999999999999988765443                                        22 235678999


Q ss_pred             CCCCEE-EEeeCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEeeCCCCCeEEEE-eCCCeEEEEcC
Q psy12697        232 PVKDFL-ASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFLATG-SYDGYARIWTS  309 (602)
Q Consensus       232 ~~~~~l-~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~i~~~  309 (602)
                      |+++.+ ++++.++.|++||..+++.....                 +....+..++|+|+++.++++ ..++.+++||+
T Consensus        40 ~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~-----------------~~~~~~~~~~~~~~g~~l~~~~~~~~~l~~~d~  102 (300)
T TIGR03866        40 KDGKLLYVCASDSDTIQVIDLATGEVIGTL-----------------PSGPDPELFALHPNGKILYIANEDDNLVTVIDI  102 (300)
T ss_pred             CCCCEEEEEECCCCeEEEEECCCCcEEEec-----------------cCCCCccEEEECCCCCEEEEEcCCCCeEEEEEC
Confidence            999876 56678899999999876432100                 011335678999999977655 56899999998


Q ss_pred             CCc-ceeecccccCCeEEEEEccCCCEEEEEecCC-cEEEEeCCCCceeEEeeeccCCeeeeeccCCCe-EEEe-eCCCe
Q psy12697        310 DGS-LKSTLGQHKGPIFALKWNKRGNYILSAGVDK-TTIIWDAASGQCEQQFSFHSAPALDVDWQSNTS-FASC-STDQH  385 (602)
Q Consensus       310 ~~~-~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg-~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~  385 (602)
                      ... ....+. +...+.+++|+|+++.+++++.++ .+.+||..+++....... ......+.|++++. ++++ ..++.
T Consensus       103 ~~~~~~~~~~-~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~  180 (300)
T TIGR03866       103 ETRKVLAEIP-VGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLV-DQRPRFAEFTADGKELWVSSEIGGT  180 (300)
T ss_pred             CCCeEEeEee-CCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEc-CCCccEEEECCCCCEEEEEcCCCCE
Confidence            753 333333 334568899999999999888765 466789988877655433 23456788888865 4334 46899


Q ss_pred             EEEEEcCCCceeeEeccCC-----C--CeEEEEECCCCCEEEEE-ECCCeEEEEeCCCCeeeEeeccccccEEEEEECCC
Q psy12697        386 IHVCKLHSDKPVKSFEGHT-----N--EVNAIKWDPQGLLLASC-SDDMTLKIWSLDKDNCVHDLQAHNKEIYTIKWSPT  457 (602)
Q Consensus       386 i~i~d~~~~~~~~~~~~~~-----~--~i~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~  457 (602)
                      |++||+.+++.+..+..+.     .  ....++|+|++++++++ +.++.+.+||+++++.+..+.              
T Consensus       181 v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~--------------  246 (300)
T TIGR03866       181 VSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLL--------------  246 (300)
T ss_pred             EEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEE--------------
Confidence            9999999988766654321     1  23568899999986554 556789999998876654331              


Q ss_pred             CCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEE-eCCCeEEEEeCCCCceeeeecccCCCeeEeeecC
Q psy12697        458 GPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSA-GVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQS  532 (602)
Q Consensus       458 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~  532 (602)
                                           +...+.+++|+|+|++|+++ +.+|.|.+||+.+++++..+... ...+.++++|
T Consensus       247 ---------------------~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~~~~  300 (300)
T TIGR03866       247 ---------------------VGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKVG-RLPWGVVVRP  300 (300)
T ss_pred             ---------------------eCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEcc-cccceeEeCC
Confidence                                 12245677888899998876 56899999999999999988754 5558888775

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG2055|consensus

Probab=99.95  E-value=1e-25  Score=201.16  Aligned_cols=288  Identities=13%  Similarity=0.251  Sum_probs=226.7

Q ss_pred             CCceEEEEECCCCCeEEEeeCCceEEEEecCCceeEEEeeccCceEEEEeCCCCCCCCCCCCccccccccccCCcceEee
Q psy12697        140 TEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKGTGGIFEVCWNSRGTPPNPPESMEVDASIEIPQSKATKLI  219 (602)
Q Consensus       140 ~~~V~~~~~s~d~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  219 (602)
                      .++|+++.|+|...+|++++.|++++||.+......                                      ..+.+.
T Consensus       213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~--------------------------------------~lqS~~  254 (514)
T KOG2055|consen  213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNP--------------------------------------KLQSIH  254 (514)
T ss_pred             cCCceEEEecCCCceEEEecCCCcEEEEEecCccCh--------------------------------------hheeee
Confidence            578999999999999999999999999987543211                                      113333


Q ss_pred             CCCcceEEEEEcCCCC-EEEEeeCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEeeCCCCCeEEEE
Q psy12697        220 GHESEVFICAWNPVKD-FLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFLATG  298 (602)
Q Consensus       220 ~h~~~v~~~~~~~~~~-~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~  298 (602)
                      -...+|.++.|.|+|. .+++++....+..||+.+.+......+...             ....+..+..++++++|+..
T Consensus       255 l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~-------------e~~~~e~FeVShd~~fia~~  321 (514)
T KOG2055|consen  255 LEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGV-------------EEKSMERFEVSHDSNFIAIA  321 (514)
T ss_pred             eccCccceeeecCCCceEEEecccceEEEEeeccccccccccCCCCc-------------ccchhheeEecCCCCeEEEc
Confidence            3567899999999998 899999999999999988765433222111             13457788899999999999


Q ss_pred             eCCCeEEEEcCCC-cceeecccccCCeEEEEEccCCCEEEEEecCCcEEEEeCCCCceeEEeeeccC-CeeeeeccCC-C
Q psy12697        299 SYDGYARIWTSDG-SLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSA-PALDVDWQSN-T  375 (602)
Q Consensus       299 ~~dg~i~i~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~-~~~~~~~~~~-~  375 (602)
                      +..|.|.+..... +.+..+ .-.+.|..++|+.+++.|++++.+|.|.+||++...++..+..... .-+.++.+.+ .
T Consensus       322 G~~G~I~lLhakT~eli~s~-KieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~  400 (514)
T KOG2055|consen  322 GNNGHIHLLHAKTKELITSF-KIEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGS  400 (514)
T ss_pred             ccCceEEeehhhhhhhhhee-eeccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCc
Confidence            9999999998664 444444 4567899999999999999999999999999999999888765433 3345555565 4


Q ss_pred             eEEEeeCCCeEEEEEcCC------CceeeEeccCCCCeEEEEECCCCCEEEEEEC--CCeEEEEeCCCCeeeEeeccccc
Q psy12697        376 SFASCSTDQHIHVCKLHS------DKPVKSFEGHTNEVNAIKWDPQGLLLASCSD--DMTLKIWSLDKDNCVHDLQAHNK  447 (602)
Q Consensus       376 ~~~~~~~~~~i~i~d~~~------~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~  447 (602)
                      .+++|+..|.|.|||..+      .+|+..+..-...|+++.|+|++++||.+|.  +..+|+-.+.+......+...+ 
T Consensus       401 ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n-  479 (514)
T KOG2055|consen  401 YLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSN-  479 (514)
T ss_pred             eEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCC-
Confidence            688899999999999653      4677777777788999999999999998875  5678888877655444443322 


Q ss_pred             cEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCCCeEEEEeCC
Q psy12697        448 EIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAA  510 (602)
Q Consensus       448 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~~  510 (602)
                                                    ..-+.|+|++|||.|.+||.|-.+|.+.+|.+.
T Consensus       480 ------------------------------~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~  512 (514)
T KOG2055|consen  480 ------------------------------TKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH  512 (514)
T ss_pred             ------------------------------CcccceEEEEecCCCceEEeecCCCceeeEeec
Confidence                                          234678999999999999999999999999874

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.95  E-value=1.2e-24  Score=206.70  Aligned_cols=278  Identities=11%  Similarity=0.145  Sum_probs=204.2

Q ss_pred             eccceeeeecccceeeeeeeccCCceEEEEECCCCCeE-EEeeCCceEEEEecCCceeEEEeeccCceEEEEeCCCCCCC
Q psy12697        118 HRLTLPLWDVERGECLNTLTRHTEPVYSVAFSPDGKFL-ASGSFDKCVHIWSARTGQLVHSYKGTGGIFEVCWNSRGTPP  196 (602)
Q Consensus       118 ~~~~i~vwd~~~~~~~~~l~~h~~~V~~~~~s~d~~~l-~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (602)
                      .++.|.+||+.+++.+..+.+|.. +.+++|+|+++.+ ++++.++.|++||..+++.+..+.                 
T Consensus         9 ~d~~v~~~d~~t~~~~~~~~~~~~-~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~-----------------   70 (300)
T TIGR03866         9 KDNTISVIDTATLEVTRTFPVGQR-PRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLP-----------------   70 (300)
T ss_pred             CCCEEEEEECCCCceEEEEECCCC-CCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEecc-----------------
Confidence            356899999999999999987654 6789999999976 567789999999999887664332                 


Q ss_pred             CCCCCccccccccccCCcceEeeCCCcceEEEEEcCCCCEEEEe-eCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCc
Q psy12697        197 NPPESMEVDASIEIPQSKATKLIGHESEVFICAWNPVKDFLASG-SGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGT  275 (602)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~s~-~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (602)
                                             .+. .+..++|+|+++.++++ +.++.+++||+.+.......               
T Consensus        71 -----------------------~~~-~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~---------------  111 (300)
T TIGR03866        71 -----------------------SGP-DPELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEI---------------  111 (300)
T ss_pred             -----------------------CCC-CccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEe---------------
Confidence                                   122 24568899999877654 56899999999765321100               


Q ss_pred             ccCCCCceeEEeeCCCCCeEEEEeCCC-eEEEEcCCCcceeecccccCCeEEEEEccCCCEEEEE-ecCCcEEEEeCCCC
Q psy12697        276 EVPSNKDVTSLDWNNNGSFLATGSYDG-YARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSA-GVDKTTIIWDAASG  353 (602)
Q Consensus       276 ~~~~~~~i~~~~~~~~~~~l~~~~~dg-~i~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~~wd~~~~  353 (602)
                        +....+.+++|+|++++++++..++ .+.+||...............+..++|+|++++|+++ ..++.+.+||++++
T Consensus       112 --~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~  189 (300)
T TIGR03866       112 --PVGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLVDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATR  189 (300)
T ss_pred             --eCCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEcCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcc
Confidence              1123467899999999999988775 4667787643332211223456789999999988655 46899999999999


Q ss_pred             ceeEEeeeccC-------CeeeeeccCCCeE--EEeeCCCeEEEEEcCCCceeeEeccCCCCeEEEEECCCCCEEEEE-E
Q psy12697        354 QCEQQFSFHSA-------PALDVDWQSNTSF--ASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASC-S  423 (602)
Q Consensus       354 ~~~~~~~~~~~-------~~~~~~~~~~~~~--~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~  423 (602)
                      +....+..+..       ....+.|++++..  ++...++.+.+||+.+++.+..+. +...+.+++|+|+|++|+++ +
T Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~  268 (300)
T TIGR03866       190 KVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLL-VGQRVWQLAFTPDEKYLLTTNG  268 (300)
T ss_pred             eeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEE-eCCCcceEEECCCCCEEEEEcC
Confidence            87776653211       2345778888663  444567789999999888766553 44578999999999999886 4


Q ss_pred             CCCeEEEEeCCCCeeeEeeccccccEEEEEECC
Q psy12697        424 DDMTLKIWSLDKDNCVHDLQAHNKEIYTIKWSP  456 (602)
Q Consensus       424 ~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~  456 (602)
                      .+|.|++||+++++.+..+... ...+.++++|
T Consensus       269 ~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~~~~  300 (300)
T TIGR03866       269 VSNDVSVIDVAALKVIKSIKVG-RLPWGVVVRP  300 (300)
T ss_pred             CCCeEEEEECCCCcEEEEEEcc-cccceeEeCC
Confidence            6899999999999998888653 4446666543

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG1332|consensus

Probab=99.95  E-value=3.4e-26  Score=187.27  Aligned_cols=254  Identities=23%  Similarity=0.402  Sum_probs=199.4

Q ss_pred             cccccCCeEEEEEccCCCEEEEEecCCcEEEEeCCCC---ceeEEeeeccCCeeeeeccC---CCeEEEeeCCCeEEEEE
Q psy12697        317 LGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASG---QCEQQFSFHSAPALDVDWQS---NTSFASCSTDQHIHVCK  390 (602)
Q Consensus       317 ~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~~---~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~i~i~d  390 (602)
                      -..|...|.++...-.|++|++++.|++|+|+.++..   +.+..+.+|.+|+..+.|..   ++.+++++.||.|.||.
T Consensus         7 dt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWk   86 (299)
T KOG1332|consen    7 DTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWK   86 (299)
T ss_pred             hhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEe
Confidence            3468888988888888999999999999999999865   45678899999999999976   46799999999999999


Q ss_pred             cCCCc--eeeEeccCCCCeEEEEECCC--CCEEEEEECCCeEEEEeCCCC---eeeEeeccccccEEEEEECCCCCC---
Q psy12697        391 LHSDK--PVKSFEGHTNEVNAIKWDPQ--GLLLASCSDDMTLKIWSLDKD---NCVHDLQAHNKEIYTIKWSPTGPE---  460 (602)
Q Consensus       391 ~~~~~--~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~dg~i~iwd~~~~---~~~~~~~~~~~~i~~~~~~~~~~~---  460 (602)
                      -.+++  .......|...|++++|.|.  |-.|++++.||.|.|.+.++.   ........|.-.+.+++|.|....   
T Consensus        87 e~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~  166 (299)
T KOG1332|consen   87 EENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSL  166 (299)
T ss_pred             cCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccc
Confidence            98874  34566789999999999994  678999999999999998764   222334567778888888875321   


Q ss_pred             CCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCc--eeeeecccCCCeeEeeecCCc----
Q psy12697        461 TSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQ--CEQQFSFHSAPALDVDWQSNT----  534 (602)
Q Consensus       461 ~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~~~~~--~~~~~~~~~~~v~~~~~s~~~----  534 (602)
                      ...+...                       .-+.|++|+.|..|+||+..+++  ...++.+|.+-|..++|.|.-    
T Consensus       167 ~~~~~~~-----------------------~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~  223 (299)
T KOG1332|consen  167 VDQGPAA-----------------------KVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPK  223 (299)
T ss_pred             cccCccc-----------------------ccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCc
Confidence            1100000                       12579999999999999998763  346689999999999999963    


Q ss_pred             -eEEEeeCCCcEEEeecCCCCceeeeecccccceEEEEecCCcEEEEEECCCCCeEEEeccCCeEEee
Q psy12697        535 -SFASCSTDQHIHVCKLHSDKPVKSFEGHTTGQLVHSYKGTGGIFEVCWNSRGDKVGASASDGSVFKN  601 (602)
Q Consensus       535 -~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~v~i~  601 (602)
                       .||+++.||++.||..+....      .-...++..  ....+..+.||+.|+.|++++.|..|.+.
T Consensus       224 s~iAS~SqDg~viIwt~~~e~e------~wk~tll~~--f~~~~w~vSWS~sGn~LaVs~GdNkvtlw  283 (299)
T KOG1332|consen  224 STIASCSQDGTVIIWTKDEEYE------PWKKTLLEE--FPDVVWRVSWSLSGNILAVSGGDNKVTLW  283 (299)
T ss_pred             eeeEEecCCCcEEEEEecCccC------ccccccccc--CCcceEEEEEeccccEEEEecCCcEEEEE
Confidence             799999999999998652211      011112222  24679999999999999999999998875

>KOG2055|consensus

Probab=99.95  E-value=1.8e-25  Score=199.60  Aligned_cols=282  Identities=16%  Similarity=0.273  Sum_probs=226.6

Q ss_pred             CCCCceeEEeeCCCCCeEEEEeCCCeEEEEcCCCcc---eeecccccCCeEEEEEccCCC-EEEEEecCCcEEEEeCCCC
Q psy12697        278 PSNKDVTSLDWNNNGSFLATGSYDGYARIWTSDGSL---KSTLGQHKGPIFALKWNKRGN-YILSAGVDKTTIIWDAASG  353 (602)
Q Consensus       278 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~---~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~~wd~~~~  353 (602)
                      +..+.|+++.|+|....+++++.||.+++|.++|+.   +..+.-...+|.+.+|.|+|. .+++++....+..||+.+.
T Consensus       211 ps~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~a  290 (514)
T KOG2055|consen  211 PSHGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETA  290 (514)
T ss_pred             cCcCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeecccc
Confidence            446889999999999999999999999999988654   444445678999999999999 8899999999999999988


Q ss_pred             ceeEEeee--c-cCCeeeeeccCC-CeEEEeeCCCeEEEEEcCCCceeeEeccCCCCeEEEEECCCCCEEEEEECCCeEE
Q psy12697        354 QCEQQFSF--H-SAPALDVDWQSN-TSFASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLK  429 (602)
Q Consensus       354 ~~~~~~~~--~-~~~~~~~~~~~~-~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~  429 (602)
                      +..+.-..  . ...+..+..+++ ..++..+..|.|.+....+++.+..++ -.+.|..++|+.+++.|++++.+|.|.
T Consensus       291 k~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~K-ieG~v~~~~fsSdsk~l~~~~~~GeV~  369 (514)
T KOG2055|consen  291 KVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFK-IEGVVSDFTFSSDSKELLASGGTGEVY  369 (514)
T ss_pred             ccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheee-eccEEeeEEEecCCcEEEEEcCCceEE
Confidence            76543222  2 223445555565 568889999999999999999988887 567799999999999999999999999


Q ss_pred             EEeCCCCeeeEeeccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCCCeEEEEeC
Q psy12697        430 IWSLDKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDA  509 (602)
Q Consensus       430 iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~  509 (602)
                      +||++...+++.+....+ +                                .=++++.|++|.|||+|+..|.|.|||.
T Consensus       370 v~nl~~~~~~~rf~D~G~-v--------------------------------~gts~~~S~ng~ylA~GS~~GiVNIYd~  416 (514)
T KOG2055|consen  370 VWNLRQNSCLHRFVDDGS-V--------------------------------HGTSLCISLNGSYLATGSDSGIVNIYDG  416 (514)
T ss_pred             EEecCCcceEEEEeecCc-c--------------------------------ceeeeeecCCCceEEeccCcceEEEecc
Confidence            999999988887754221 1                                1246777889999999999999999996


Q ss_pred             CC------CceeeeecccCCCeeEeeecCCc-eEEEee--CCCcEEEeecCCCCceeeeecccccceEEEEecCCcEEEE
Q psy12697        510 AS------GQCEQQFSFHSAPALDVDWQSNT-SFASCS--TDQHIHVCKLHSDKPVKSFEGHTTGQLVHSYKGTGGIFEV  580 (602)
Q Consensus       510 ~~------~~~~~~~~~~~~~v~~~~~s~~~-~l~~~~--~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l  580 (602)
                      .+      .+++..+..-...|+++.|+||+ .||.++  .+..+++-.+.+......|+.....        -+.|+||
T Consensus       417 ~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~--------vg~vtc~  488 (514)
T KOG2055|consen  417 NSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTK--------VGHVTCM  488 (514)
T ss_pred             chhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCc--------ccceEEE
Confidence            53      45666776677789999999999 666555  5778999988777666555543211        2669999


Q ss_pred             EECCCCCeEEEeccCCeEEee
Q psy12697        581 CWNSRGDKVGASASDGSVFKN  601 (602)
Q Consensus       581 ~~spdg~~l~~~~~dg~v~i~  601 (602)
                      +|||.|.+||+|..+|.+.+.
T Consensus       489 aFSP~sG~lAvGNe~grv~l~  509 (514)
T KOG2055|consen  489 AFSPNSGYLAVGNEAGRVHLF  509 (514)
T ss_pred             EecCCCceEEeecCCCceeeE
Confidence            999999999999999998764

>KOG0269|consensus

Probab=99.94  E-value=3.1e-26  Score=217.20  Aligned_cols=289  Identities=18%  Similarity=0.341  Sum_probs=219.9

Q ss_pred             CcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEeeCC-CCCeEEEEeC
Q psy12697        222 ESEVFICAWNPVKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNN-NGSFLATGSY  300 (602)
Q Consensus       222 ~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~  300 (602)
                      ......++..++-..++.++. ..++++.+.............         +......-.+..+.|.. +.++||+++.
T Consensus        39 k~~~nAIs~nr~~~qiv~AGr-s~lklyai~~~~~~~~~~~~~---------k~kqn~~~S~~DVkW~~~~~NlIAT~s~  108 (839)
T KOG0269|consen   39 KAKANAISVNRDINQIVVAGR-SLLKLYAINPNDFSEKCNHRF---------KTKQNKFYSAADVKWGQLYSNLIATCST  108 (839)
T ss_pred             ccccceEeecCCcceeEEecc-cceeeEeeCcccCCcceeeec---------ccccceeeehhhcccccchhhhheeecC
Confidence            345666777788877777765 568888876654432211110         00001113356677875 5689999999


Q ss_pred             CCeEEEEcCCC----cceeecccccCCeEEEEEccC-CCEEEEEecCCcEEEEeCCCCceeEEeeeccCCeeeeeccCC-
Q psy12697        301 DGYARIWTSDG----SLKSTLGQHKGPIFALKWNKR-GNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSN-  374 (602)
Q Consensus       301 dg~i~i~~~~~----~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~-  374 (602)
                      +|.|.+||+..    ++...+..|...+.++.|++. .++|++|+.||.|++||++..+....+......+.++.|+|. 
T Consensus       109 nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~  188 (839)
T KOG0269|consen  109 NGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGY  188 (839)
T ss_pred             CCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCC
Confidence            99999999763    455678899999999999874 467889999999999999999999999999999999999986 


Q ss_pred             -CeEEEeeCCCeEEEEEcCCC-ceeeEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeeeEeecc-ccccEEE
Q psy12697        375 -TSFASCSTDQHIHVCKLHSD-KPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHDLQA-HNKEIYT  451 (602)
Q Consensus       375 -~~~~~~~~~~~i~i~d~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~i~~  451 (602)
                       ..|+++...|.+++||++.. ++..++.+|.++|.|+.|+|++.+||||+.|+.|+|||+.+.+....... ...++..
T Consensus       189 ~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~r  268 (839)
T KOG0269|consen  189 GNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGR  268 (839)
T ss_pred             CceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEEeecceeee
Confidence             67999999999999999865 56788999999999999999999999999999999999986543222111 1234444


Q ss_pred             EEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEe--CCCeEEEEeCCCCc-eeeeecccCCCeeEe
Q psy12697        452 IKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAG--VDKTTIIWDAASGQ-CEQQFSFHSAPALDV  528 (602)
Q Consensus       452 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~--~dg~i~iwd~~~~~-~~~~~~~~~~~v~~~  528 (602)
                      +.|.|..+                                 ..||+++  .|-.|+|||++..- +..++..|...++.+
T Consensus       269 VkWRP~~~---------------------------------~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i  315 (839)
T KOG0269|consen  269 VKWRPARS---------------------------------YHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGI  315 (839)
T ss_pred             eeeccCcc---------------------------------chhhhhhccccceEEEEeeccccccceeeeccCccccce
Confidence            44444322                                 3466654  47889999998653 457888999999999


Q ss_pred             eecC-Cc-eEEEeeCCCcEEEeecCCC
Q psy12697        529 DWQS-NT-SFASCSTDQHIHVCKLHSD  553 (602)
Q Consensus       529 ~~s~-~~-~l~~~~~d~~i~iw~~~~~  553 (602)
                      +|-. |. .+.+++.||.|..-.+++.
T Consensus       316 ~W~~~d~~~l~s~sKD~tv~qh~~kna  342 (839)
T KOG0269|consen  316 AWDSGDRINLWSCSKDGTVLQHLFKNA  342 (839)
T ss_pred             eccCCCceeeEeecCccHHHHhhhhcc
Confidence            9966 33 8999999999987766554

>KOG0264|consensus

Probab=99.94  E-value=1.3e-25  Score=200.64  Aligned_cols=250  Identities=20%  Similarity=0.367  Sum_probs=192.2

Q ss_pred             ccccCCeEEEEEccCCCE-EEEEecCCcEEEEeCCCCce----------eEEeeeccCCeeeeeccCC--CeEEEeeCCC
Q psy12697        318 GQHKGPIFALKWNKRGNY-ILSAGVDKTTIIWDAASGQC----------EQQFSFHSAPALDVDWQSN--TSFASCSTDQ  384 (602)
Q Consensus       318 ~~~~~~i~~~~~~~~~~~-l~~~~~dg~i~~wd~~~~~~----------~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~  384 (602)
                      ..|.+.|+.+.+-|.... +++.+..+.+.|||......          ...+.+|...-..++|++.  +.+++++.|+
T Consensus       121 i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~  200 (422)
T KOG0264|consen  121 INHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDH  200 (422)
T ss_pred             ccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCC
Confidence            458899999999986654 55667789999999764321          2256677777788899875  7799999999


Q ss_pred             eEEEEEcCCC-------ceeeEeccCCCCeEEEEECC-CCCEEEEEECCCeEEEEeCCC--CeeeEeeccccccEEEEEE
Q psy12697        385 HIHVCKLHSD-------KPVKSFEGHTNEVNAIKWDP-QGLLLASCSDDMTLKIWSLDK--DNCVHDLQAHNKEIYTIKW  454 (602)
Q Consensus       385 ~i~i~d~~~~-------~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~iwd~~~--~~~~~~~~~~~~~i~~~~~  454 (602)
                      .|.+||+...       .+...+.+|...|..++|+| +..+++++++|+.+.|||+++  .++.....+          
T Consensus       201 ~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~a----------  270 (422)
T KOG0264|consen  201 TICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKA----------  270 (422)
T ss_pred             cEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccc----------
Confidence            9999999753       34567889999999999999 567889999999999999994  444444444          


Q ss_pred             CCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEcc-CCCEEEEEeCCCeEEEEeCCCC-ceeeeecccCCCeeEeeecC
Q psy12697        455 SPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNK-RGNYILSAGVDKTTIIWDAASG-QCEQQFSFHSAPALDVDWQS  532 (602)
Q Consensus       455 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~-~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~~~~s~  532 (602)
                                              |.+.|.|++|+| ++..||+|+.|++|.+||+++- +++.++.+|...|.++.|||
T Consensus       271 ------------------------h~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSP  326 (422)
T KOG0264|consen  271 ------------------------HSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSP  326 (422)
T ss_pred             ------------------------cCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCC
Confidence                                    445555555555 5567999999999999999875 46789999999999999999


Q ss_pred             Cc--eEEEeeCCCcEEEeecCCCCceeeeecccccceE--EEEec-CCcEEEEEECCCCCe-EEEeccCCeEEee
Q psy12697        533 NT--SFASCSTDQHIHVCKLHSDKPVKSFEGHTTGQLV--HSYKG-TGGIFEVCWNSRGDK-VGASASDGSVFKN  601 (602)
Q Consensus       533 ~~--~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~i~~l~~spdg~~-l~~~~~dg~v~i~  601 (602)
                      ..  .||+++.|+.+.|||+..-...+.......+..-  ....+ ...|..+.|+|...+ ++++++|+.+.|+
T Consensus       327 h~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW  401 (422)
T KOG0264|consen  327 HNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIW  401 (422)
T ss_pred             CCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEe
Confidence            88  8999999999999999764333322222223222  22222 467999999999876 6788889988875

>KOG1274|consensus

Probab=99.94  E-value=7.4e-25  Score=212.05  Aligned_cols=282  Identities=18%  Similarity=0.336  Sum_probs=218.0

Q ss_pred             eccCCceEEEEECCCCCeEEEeeCCceEEEEecCCce-eEEEeeccCceEEEEeCCCCCCCCCCCCccccccccccCCcc
Q psy12697        137 TRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQ-LVHSYKGTGGIFEVCWNSRGTPPNPPESMEVDASIEIPQSKA  215 (602)
Q Consensus       137 ~~h~~~V~~~~~s~d~~~l~s~~~d~~v~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  215 (602)
                      .+|+.+-+.++|.|+|.+|.+++.||.|++|+..+-. .-                                        
T Consensus        10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P----------------------------------------   49 (933)
T KOG1274|consen   10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEP----------------------------------------   49 (933)
T ss_pred             hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCC----------------------------------------
Confidence            3689999999999999999999999999999875431 11                                        


Q ss_pred             eEeeCCCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEeeCCCCCeE
Q psy12697        216 TKLIGHESEVFICAWNPVKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFL  295 (602)
Q Consensus       216 ~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l  295 (602)
                      ..+.-+...|.+++..  +.+|++++.+++|.+|.+.++......     .+           ..-++.+++++.+|+++
T Consensus        50 ~ti~~~g~~v~~ia~~--s~~f~~~s~~~tv~~y~fps~~~~~iL-----~R-----------ftlp~r~~~v~g~g~~i  111 (933)
T KOG1274|consen   50 ETIDISGELVSSIACY--SNHFLTGSEQNTVLRYKFPSGEEDTIL-----AR-----------FTLPIRDLAVSGSGKMI  111 (933)
T ss_pred             chhhccCceeEEEeec--ccceEEeeccceEEEeeCCCCCcccee-----ee-----------eeccceEEEEecCCcEE
Confidence            1111256667777654  559999999999999999887653211     11           14679999999999999


Q ss_pred             EEEeCCCeEEEEcCC-CcceeecccccCCeEEEEEccCCCEEEEEecCCcEEEEeCCCCceeEEeeeccCCeeeeeccCC
Q psy12697        296 ATGSYDGYARIWTSD-GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSN  374 (602)
Q Consensus       296 ~~~~~dg~i~i~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~  374 (602)
                      |.|+.|-.|++.+.. ......+.+|.++|.++.|+|++++|++.+.||.|++||+.++.+...+..-...         
T Consensus       112 aagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~---------  182 (933)
T KOG1274|consen  112 AAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKD---------  182 (933)
T ss_pred             EeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCcc---------
Confidence            999999999999975 6677889999999999999999999999999999999999988776655421110         


Q ss_pred             CeEEEeeCCCeEEEEEcCCCceeeEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeeeEeeccccccEEEEEE
Q psy12697        375 TSFASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHDLQAHNKEIYTIKW  454 (602)
Q Consensus       375 ~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~  454 (602)
                      .              +..          ....+..++|+|+|..|+..+.|+.|++|+..+.+....+...         
T Consensus       183 n--------------~~~----------~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~---------  229 (933)
T KOG1274|consen  183 N--------------EFI----------LSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDK---------  229 (933)
T ss_pred             c--------------ccc----------ccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeeccc---------
Confidence            0              000          0234677999999888899999999999999988877766532         


Q ss_pred             CCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeeecccCCCeeEeeecCCc
Q psy12697        455 SPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNT  534 (602)
Q Consensus       455 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~  534 (602)
                                             .+...+..+.|||+|+|||+++.||.|.|||.++-+.    ......|.+++|.|+.
T Consensus       230 -----------------------~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~~----~~~~~~Vc~~aw~p~~  282 (933)
T KOG1274|consen  230 -----------------------LSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDTHER----HEFKRAVCCEAWKPNA  282 (933)
T ss_pred             -----------------------ccccceEEEEEcCCCcEEeeeccCCcEEEEecccchh----ccccceeEEEecCCCC
Confidence                                   1334488899999999999999999999999997322    2234579999999987


Q ss_pred             -eEEEeeCCCcE
Q psy12697        535 -SFASCSTDQHI  545 (602)
Q Consensus       535 -~l~~~~~d~~i  545 (602)
                       .+-.....|..
T Consensus       283 n~it~~~~~g~~  294 (933)
T KOG1274|consen  283 NAITLITALGTL  294 (933)
T ss_pred             CeeEEEeecccc
Confidence             44333333333

>KOG1273|consensus

Probab=99.94  E-value=3.8e-25  Score=187.91  Aligned_cols=282  Identities=16%  Similarity=0.267  Sum_probs=197.2

Q ss_pred             eEEEEECCCCCeEEEeeCCceEEEEecCCceeEEEeeccCceEEEEeCCCCCCCCCCCCccccccccccCCcceEeeCCC
Q psy12697        143 VYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKGTGGIFEVCWNSRGTPPNPPESMEVDASIEIPQSKATKLIGHE  222 (602)
Q Consensus       143 V~~~~~s~d~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~  222 (602)
                      -.|+.|++.|.+||+|+.||.|.|||+.|...-                                        ..+.+|.
T Consensus        26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~ia----------------------------------------r~lsaH~   65 (405)
T KOG1273|consen   26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIA----------------------------------------RMLSAHV   65 (405)
T ss_pred             cceEEeccCcceeeeeccCCcEEEEEccccchh----------------------------------------hhhhccc
Confidence            679999999999999999999999999875532                                        5567899


Q ss_pred             cceEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEeeCCCC-CeEEEEeCC
Q psy12697        223 SEVFICAWNPVKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNG-SFLATGSYD  301 (602)
Q Consensus       223 ~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~d  301 (602)
                      .+|.+++|+++|+.|++++.|..|.+||+..+.......+                 ..+|....|+|.. +..++.-.+
T Consensus        66 ~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rirf-----------------~spv~~~q~hp~k~n~~va~~~~  128 (405)
T KOG1273|consen   66 RPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIRF-----------------DSPVWGAQWHPRKRNKCVATIME  128 (405)
T ss_pred             cceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEEc-----------------cCccceeeeccccCCeEEEEEec
Confidence            9999999999999999999999999999998875432222                 4789999999943 333333333


Q ss_pred             CeEEEEcCCCcceeecccc-----cCCeEEEEEccCCCEEEEEecCCcEEEEeCCCCceeEEeeeccCCeeeeeccCCCe
Q psy12697        302 GYARIWTSDGSLKSTLGQH-----KGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTS  376 (602)
Q Consensus       302 g~i~i~~~~~~~~~~~~~~-----~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~  376 (602)
                      ..-.+.+........+...     ...-.+..|.+.|+++++|...|.+.++|..+.+++..+                 
T Consensus       129 ~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~-----------------  191 (405)
T KOG1273|consen  129 ESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETLECVASF-----------------  191 (405)
T ss_pred             CCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEecchheeeeee-----------------
Confidence            3233333322111111110     011112245666666666666666666666665544433                 


Q ss_pred             EEEeeCCCeEEEEEcCCCceeeEeccCC-CCeEEEEECCCCCEEEEEECCCeEEEEeCCCCee------eEeeccccccE
Q psy12697        377 FASCSTDQHIHVCKLHSDKPVKSFEGHT-NEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNC------VHDLQAHNKEI  449 (602)
Q Consensus       377 ~~~~~~~~~i~i~d~~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~------~~~~~~~~~~i  449 (602)
                                              +-.. ..|..+.++..|+.|+.-+.|..||.|+++.--.      +........-|
T Consensus       192 ------------------------rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvV  247 (405)
T KOG1273|consen  192 ------------------------RITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVV  247 (405)
T ss_pred             ------------------------eechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHH
Confidence                                    2222 4578899999999999999999999999863110      00000001111


Q ss_pred             EEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeC-CCeEEEEeCCCCceeeeecccC-CCeeE
Q psy12697        450 YTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGV-DKTTIIWDAASGQCEQQFSFHS-APALD  527 (602)
Q Consensus       450 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~-~~v~~  527 (602)
                                                   .+..-.+++||.+|.|+++++. ...++||.-..|.+++.+.+.. .....
T Consensus       248 -----------------------------Nk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~D  298 (405)
T KOG1273|consen  248 -----------------------------NKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKGEELLD  298 (405)
T ss_pred             -----------------------------hhhhhhheeecCCccEEEeccccceeEEEEecCCcceeeeecCCchhheee
Confidence                                         1233356889999999988764 4679999999999999999877 56889


Q ss_pred             eeecCCc-eEEEeeCCCcEEEeecCC
Q psy12697        528 VDWQSNT-SFASCSTDQHIHVCKLHS  552 (602)
Q Consensus       528 ~~~s~~~-~l~~~~~d~~i~iw~~~~  552 (602)
                      +.|+|-. .+++- ..|.|+||....
T Consensus       299 V~whp~rp~i~si-~sg~v~iw~~~~  323 (405)
T KOG1273|consen  299 VNWHPVRPIIASI-ASGVVYIWAVVQ  323 (405)
T ss_pred             cccccceeeeeec-cCCceEEEEeec
Confidence            9999998 55555 889999999754

>KOG0267|consensus

Probab=99.94  E-value=7.3e-27  Score=219.65  Aligned_cols=253  Identities=23%  Similarity=0.429  Sum_probs=217.8

Q ss_pred             eEEEEeCCCeEEEEcCCCcceeecccccCCeEEEEEccCCCEEEEEecCCcEEEEeCCCCceeEEeeeccCCeeeeeccC
Q psy12697        294 FLATGSYDGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQS  373 (602)
Q Consensus       294 ~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~  373 (602)
                      +++.+...-.+++|+.+     .+..|...+.++..-..++.+++|+.|..+-+|.+.....+..+.+|..+|.++.|..
T Consensus         6 ~~m~~~~~t~Lr~~~~~-----~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~   80 (825)
T KOG0267|consen    6 FLMKTKRATKLRVWDTR-----EFVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDT   80 (825)
T ss_pred             ccceeeeeeccccccch-----hhhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCcceeeecCc
Confidence            34444444556677654     3446788888888877888999999999999999988888888999999999999998


Q ss_pred             CC-eEEEeeCCCeEEEEEcCCCceeeEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeeeEeeccccccEEEE
Q psy12697        374 NT-SFASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHDLQAHNKEIYTI  452 (602)
Q Consensus       374 ~~-~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~  452 (602)
                      .. .+++|+.+|.|++||+...+.++++.+|...+.++.|+|-+.+.++|+.|+.+++||.+...+.+.+.+|       
T Consensus        81 ~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~-------  153 (825)
T KOG0267|consen   81 SERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSH-------  153 (825)
T ss_pred             chhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceeeecCC-------
Confidence            74 5778889999999999999999999999999999999999999999999999999999988888777654       


Q ss_pred             EECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeeecccCCCeeEeeecC
Q psy12697        453 KWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQS  532 (602)
Q Consensus       453 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~  532 (602)
                                                 ...+..+.|+|+|+|++++++|..++|||+..|+....|..|...+.++.|+|
T Consensus       154 ---------------------------~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp  206 (825)
T KOG0267|consen  154 ---------------------------TRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHP  206 (825)
T ss_pred             ---------------------------cceeEEEeecCCCceeeccCCcceeeeecccccccccccccccccccccccCc
Confidence                                       45566667777999999999999999999999999999999999999999999


Q ss_pred             Cc-eEEEeeCCCcEEEeecCCCCceeeeecccccceEEEEecCCcEEEEEECCCCCeEEEeccCC
Q psy12697        533 NT-SFASCSTDQHIHVCKLHSDKPVKSFEGHTTGQLVHSYKGTGGIFEVCWNSRGDKVGASASDG  596 (602)
Q Consensus       533 ~~-~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg  596 (602)
                      .. .+++|+.|+++++||+++-+.+...+...           ..|.+++|+|+++.+++|....
T Consensus       207 ~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~~-----------~~v~~~~fn~~~~~~~~G~q~s  260 (825)
T KOG0267|consen  207 LEVLLAPGSSDRTVRFWDLETFEVISSGKPET-----------DGVRSLAFNPDGKIVLSGEQIS  260 (825)
T ss_pred             hhhhhccCCCCceeeeeccceeEEeeccCCcc-----------CCceeeeecCCceeeecCchhh
Confidence            99 99999999999999998776665554433           6699999999999998887654

>KOG0646|consensus

Probab=99.94  E-value=5.4e-25  Score=197.04  Aligned_cols=286  Identities=18%  Similarity=0.310  Sum_probs=224.6

Q ss_pred             cceeccceeeeecccceeeeeeeccCCceEEEEECCCCCeEEEee-CCceEEEEecCCceeEEEeeccCceEEEEeCCCC
Q psy12697        115 EEVHRLTLPLWDVERGECLNTLTRHTEPVYSVAFSPDGKFLASGS-FDKCVHIWSARTGQLVHSYKGTGGIFEVCWNSRG  193 (602)
Q Consensus       115 ~~~~~~~i~vwd~~~~~~~~~l~~h~~~V~~~~~s~d~~~l~s~~-~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  193 (602)
                      ...+..++.+||+.+|...-++++-.....+-.-.-.+.|++++. .-..|.+|.+........                
T Consensus        13 sS~d~~~~~~~dl~TGt~~~~ykg~~~a~~~sl~~l~~~yllsaq~~rp~l~vw~i~k~~~~~q----------------   76 (476)
T KOG0646|consen   13 SSFDPINCIVWDLRTGTSLLQYKGSYLAQAASLTALNNEYLLSAQLKRPLLHVWEILKKDQVVQ----------------   76 (476)
T ss_pred             cCCCCcceeEEecCCCceeEEecCcccccchhhhhhchhheeeecccCccccccccCchhhhhh----------------
Confidence            334556799999999999999887522211111111246777765 345788998865443321                


Q ss_pred             CCCCCCCCccccccccccCCcceEeeCCCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCccceEEEEEEecCC
Q psy12697        194 TPPNPPESMEVDASIEIPQSKATKLIGHESEVFICAWNPVKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKG  273 (602)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~  273 (602)
                                              ..--.++|.+++-+|+|.+|+.|+..|.|.+|.+.++......             
T Consensus        77 ------------------------~~v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~-------------  119 (476)
T KOG0646|consen   77 ------------------------YIVLPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVL-------------  119 (476)
T ss_pred             ------------------------hcccccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHH-------------
Confidence                                    1113567999999999999999999999999999999865322             


Q ss_pred             CcccCCCCceeEEeeCCCCCeEEEEeCCCeEEEEcCC----------CcceeecccccCCeEEEEEccC--CCEEEEEec
Q psy12697        274 GTEVPSNKDVTSLDWNNNGSFLATGSYDGYARIWTSD----------GSLKSTLGQHKGPIFALKWNKR--GNYILSAGV  341 (602)
Q Consensus       274 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~----------~~~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~  341 (602)
                         ..|-..|+|+.|+.||.+|++|+.||.|.+|.+.          ......+..|.-+|+++...+.  ..++++++.
T Consensus       120 ---~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~  196 (476)
T KOG0646|consen  120 ---SAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASE  196 (476)
T ss_pred             ---HhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecC
Confidence               2356889999999999999999999999999742          2456678899999999998765  358999999


Q ss_pred             CCcEEEEeCCCCceeEEeeeccCCeeeeeccCC-CeEEEeeCCCeEEEEEcCCC----------------ceeeEeccCC
Q psy12697        342 DKTTIIWDAASGQCEQQFSFHSAPALDVDWQSN-TSFASCSTDQHIHVCKLHSD----------------KPVKSFEGHT  404 (602)
Q Consensus       342 dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~i~d~~~~----------------~~~~~~~~~~  404 (602)
                      |.++++||+..+..+..+.. +..+.+++..|. ..+++|+.+|.|.+.++...                ..+..+.+|.
T Consensus       197 D~t~k~wdlS~g~LLlti~f-p~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~  275 (476)
T KOG0646|consen  197 DRTIKLWDLSLGVLLLTITF-PSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHE  275 (476)
T ss_pred             CceEEEEEeccceeeEEEec-CCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeecccc
Confidence            99999999999988877764 456778888886 55889999999999887432                2456677898


Q ss_pred             C--CeEEEEECCCCCEEEEEECCCeEEEEeCCCCeeeEeeccccccEEEEEECCC
Q psy12697        405 N--EVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHDLQAHNKEIYTIKWSPT  457 (602)
Q Consensus       405 ~--~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~  457 (602)
                      +  .|+|++++-||.+|++|+.||.|.|||+.+.++++++....++|+.+.+.|-
T Consensus       276 ~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~~~kgpVtnL~i~~~  330 (476)
T KOG0646|consen  276 NESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQTSKGPVTNLQINPL  330 (476)
T ss_pred             CCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHHHhhhccccceeEeecc
Confidence            8  9999999999999999999999999999999999998877778888777553

>KOG1274|consensus

Probab=99.94  E-value=4.6e-24  Score=206.63  Aligned_cols=278  Identities=19%  Similarity=0.311  Sum_probs=225.4

Q ss_pred             CCCCceeEEeeCCCCCeEEEEeCCCeEEEEcCCC--cceeecccccCCeEEEEEccCCCEEEEEecCCcEEEEeCCCCce
Q psy12697        278 PSNKDVTSLDWNNNGSFLATGSYDGYARIWTSDG--SLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQC  355 (602)
Q Consensus       278 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~  355 (602)
                      .|....+.++|.|+|.+|++++.||.|++|+...  .....+..+...|.+++-.  +.+|++++.+++|.+|....++.
T Consensus        11 aht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~--s~~f~~~s~~~tv~~y~fps~~~   88 (933)
T KOG1274|consen   11 AHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACY--SNHFLTGSEQNTVLRYKFPSGEE   88 (933)
T ss_pred             hccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeec--ccceEEeeccceEEEeeCCCCCc
Confidence            3567789999999999999999999999998553  2333344477777777654  55899999999999999999887


Q ss_pred             eEEeeeccCCeeeeeccCCC-eEEEeeCCCeEEEEEcCCCceeeEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEeCC
Q psy12697        356 EQQFSFHSAPALDVDWQSNT-SFASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLD  434 (602)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~  434 (602)
                      -..+.....++.+++++.++ .++.|+.|-.|++.++........+.+|..+|.++.|+|++.+||+.+-||.|++||+.
T Consensus        89 ~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~  168 (933)
T KOG1274|consen   89 DTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQ  168 (933)
T ss_pred             cceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEcc
Confidence            76677777889999998875 47788888999999999999999999999999999999999999999999999999999


Q ss_pred             CCeeeEeeccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCce
Q psy12697        435 KDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQC  514 (602)
Q Consensus       435 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~~~~~~  514 (602)
                      ++.+..++..-...-.                          ......+..++|+|+|..++..+.|+.|++|+..+++.
T Consensus       169 ~~~~~~tl~~v~k~n~--------------------------~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~  222 (933)
T KOG1274|consen  169 DGILSKTLTGVDKDNE--------------------------FILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWEL  222 (933)
T ss_pred             cchhhhhcccCCcccc--------------------------ccccceeeeeeecCCCCeEEeeccCCeEEEEccCCcee
Confidence            9887777654211100                          00134567789999988888888999999999999998


Q ss_pred             eeeecc--cCCCeeEeeecCCc-eEEEeeCCCcEEEeecCCCCceeeeecccccceEEEEecCCcEEEEEECCCCCeEEE
Q psy12697        515 EQQFSF--HSAPALDVDWQSNT-SFASCSTDQHIHVCKLHSDKPVKSFEGHTTGQLVHSYKGTGGIFEVCWNSRGDKVGA  591 (602)
Q Consensus       515 ~~~~~~--~~~~v~~~~~s~~~-~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~  591 (602)
                      ...+..  +...+..+.|+|+| +||+++.||.|.|||+++-..      |.         ....|.+++|-|+.+-+-.
T Consensus       223 ~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~~------~~---------~~~~Vc~~aw~p~~n~it~  287 (933)
T KOG1274|consen  223 QFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDTHER------HE---------FKRAVCCEAWKPNANAITL  287 (933)
T ss_pred             heeecccccccceEEEEEcCCCcEEeeeccCCcEEEEecccchh------cc---------ccceeEEEecCCCCCeeEE
Confidence            877764  44458999999999 999999999999999876111      22         1256999999999987766


Q ss_pred             eccCCeE
Q psy12697        592 SASDGSV  598 (602)
Q Consensus       592 ~~~dg~v  598 (602)
                      ....|..
T Consensus       288 ~~~~g~~  294 (933)
T KOG1274|consen  288 ITALGTL  294 (933)
T ss_pred             Eeecccc
Confidence            6555543

>KOG1273|consensus

Probab=99.93  E-value=5.1e-24  Score=181.11  Aligned_cols=274  Identities=15%  Similarity=0.299  Sum_probs=207.2

Q ss_pred             eeEEeeCCCCCeEEEEeCCCeEEEEcCCC-cceeecccccCCeEEEEEccCCCEEEEEecCCcEEEEeCCCCceeEEeee
Q psy12697        283 VTSLDWNNNGSFLATGSYDGYARIWTSDG-SLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSF  361 (602)
Q Consensus       283 i~~~~~~~~~~~l~~~~~dg~i~i~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~  361 (602)
                      ..|+.|++.|.+||+|+.||.|.+||+.. .....+.+|..+|.+++||++|+.|++++.|..+.+||+..|.+++.+.+
T Consensus        26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rirf  105 (405)
T KOG1273|consen   26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIRF  105 (405)
T ss_pred             cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEEc
Confidence            78999999999999999999999999763 45567889999999999999999999999999999999999998888874


Q ss_pred             ccCCeeeeeccCC--CeEEEeeCCCeEEEEEcCCCceeeEeccC----CCCeEEEEECCCCCEEEEEECCCeEEEEeCCC
Q psy12697        362 HSAPALDVDWQSN--TSFASCSTDQHIHVCKLHSDKPVKSFEGH----TNEVNAIKWDPQGLLLASCSDDMTLKIWSLDK  435 (602)
Q Consensus       362 ~~~~~~~~~~~~~--~~~~~~~~~~~i~i~d~~~~~~~~~~~~~----~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~  435 (602)
                       ..++..+.|.|.  +.+++.-.+..-.+.++...+....-...    +....+..|++.|+++++|...|.+.++|..+
T Consensus       106 -~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t  184 (405)
T KOG1273|consen  106 -DSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAET  184 (405)
T ss_pred             -cCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEecch
Confidence             568888999885  44555555555555565543211111111    11223346899999999999999999999999


Q ss_pred             CeeeEeeccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCC---
Q psy12697        436 DNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASG---  512 (602)
Q Consensus       436 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~~~~---  512 (602)
                      .+++..++...                                 ...|..+.++..|++|+.-+.|+.|+.|+++.-   
T Consensus       185 ~e~vas~rits---------------------------------~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~  231 (405)
T KOG1273|consen  185 LECVASFRITS---------------------------------VQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDE  231 (405)
T ss_pred             heeeeeeeech---------------------------------heeeeEEEEeccCcEEEEecCCceEEEEehhhhccc
Confidence            88887765432                                 234667777789999999999999999997621   


Q ss_pred             ----cee--eeecc--cCCCeeEeeecCCc-eEEEee-CCCcEEEeecCCCCceeeeecccccceEEEEecCCcEEEEEE
Q psy12697        513 ----QCE--QQFSF--HSAPALDVDWQSNT-SFASCS-TDQHIHVCKLHSDKPVKSFEGHTTGQLVHSYKGTGGIFEVCW  582 (602)
Q Consensus       513 ----~~~--~~~~~--~~~~v~~~~~s~~~-~l~~~~-~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~  582 (602)
                          ++.  +.+..  ....-.+++||.+| +++.++ ....++||.-..|..++.+.|.+          .....++.|
T Consensus       232 ~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~k----------gE~l~DV~w  301 (405)
T KOG1273|consen  232 GRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTK----------GEELLDVNW  301 (405)
T ss_pred             CccCCcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCCcceeeeecCCc----------hhheeeccc
Confidence                111  22211  12234678999999 655554 45679999988888888887754          234678899


Q ss_pred             CCCCCeEEEeccCCeEEee
Q psy12697        583 NSRGDKVGASASDGSVFKN  601 (602)
Q Consensus       583 spdg~~l~~~~~dg~v~i~  601 (602)
                      .|-...+++- ..|.++|+
T Consensus       302 hp~rp~i~si-~sg~v~iw  319 (405)
T KOG1273|consen  302 HPVRPIIASI-ASGVVYIW  319 (405)
T ss_pred             ccceeeeeec-cCCceEEE
Confidence            9999888877 77888775

>KOG2445|consensus

Probab=99.93  E-value=3.6e-23  Score=175.50  Aligned_cols=254  Identities=24%  Similarity=0.456  Sum_probs=190.2

Q ss_pred             eccCCceEEEEECCCCCeEEEeeCCceEEEEecCCceeEEEeeccCceEEEEeCCCCCCCCCCCCccccccccccCCcce
Q psy12697        137 TRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKGTGGIFEVCWNSRGTPPNPPESMEVDASIEIPQSKAT  216 (602)
Q Consensus       137 ~~h~~~V~~~~~s~d~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  216 (602)
                      .+|.+-|+++.|.+-|+.+|||+.|++|+|||.++.......                                    ..
T Consensus        10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~------------------------------------Ts   53 (361)
T KOG2445|consen   10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSC------------------------------------TS   53 (361)
T ss_pred             cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEE------------------------------------ee
Confidence            469999999999999999999999999999997543321111                                    14


Q ss_pred             EeeCCCcceEEEEEcC--CCCEEEEeeCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEeeCC--CC
Q psy12697        217 KLIGHESEVFICAWNP--VKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNN--NG  292 (602)
Q Consensus       217 ~l~~h~~~v~~~~~~~--~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~  292 (602)
                      ....|.+.|..+.|.+  -|+.+|+++.|+++.||.-........ ...-....      ........|+.+.|.|  -|
T Consensus        54 ~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~~~~-~~~Wv~~t------tl~DsrssV~DV~FaP~hlG  126 (361)
T KOG2445|consen   54 SWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSEEAH-GRRWVRRT------TLVDSRSSVTDVKFAPKHLG  126 (361)
T ss_pred             eEEecCCcEEEEEecCccccceEEEEecCCceeeeeecccccccc-cceeEEEE------EeecCCcceeEEEecchhcc
Confidence            5677999999999976  479999999999999998642221110 01111111      1223467899999999  57


Q ss_pred             CeEEEEeCCCeEEEEcCCC-------cceee-------cccccCCeEEEEEccC---CCEEEEEecC-----CcEEEEeC
Q psy12697        293 SFLATGSYDGYARIWTSDG-------SLKST-------LGQHKGPIFALKWNKR---GNYILSAGVD-----KTTIIWDA  350 (602)
Q Consensus       293 ~~l~~~~~dg~i~i~~~~~-------~~~~~-------~~~~~~~i~~~~~~~~---~~~l~~~~~d-----g~i~~wd~  350 (602)
                      -.+|+++.||.++||+.-.       .+...       ...+..+..|+.|+|.   ..+|+.|+.+     +.++||..
T Consensus       127 LklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~  206 (361)
T KOG2445|consen  127 LKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEY  206 (361)
T ss_pred             eEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEe
Confidence            7899999999999998431       11111       2246677889999974   3567777655     47888865


Q ss_pred             CCCc----eeEEeeeccCCeeeeeccCC-----CeEEEeeCCCeEEEEEcCCC--------------------ceeeEec
Q psy12697        351 ASGQ----CEQQFSFHSAPALDVDWQSN-----TSFASCSTDQHIHVCKLHSD--------------------KPVKSFE  401 (602)
Q Consensus       351 ~~~~----~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~i~i~d~~~~--------------------~~~~~~~  401 (602)
                      ..+.    .+..+..+..+|.+++|.|+     ..+++++.|| |+||.+...                    +.+..+.
T Consensus       207 ~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~  285 (361)
T KOG2445|consen  207 NENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELD  285 (361)
T ss_pred             cCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeecc
Confidence            5432    34456789999999999997     3489999999 999998731                    2345677


Q ss_pred             cCCCCeEEEEECCCCCEEEEEECCCeEEEEeCC
Q psy12697        402 GHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLD  434 (602)
Q Consensus       402 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~  434 (602)
                      +|+++|..+.|+-.|..|++.+.||.||+|...
T Consensus       286 ~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkan  318 (361)
T KOG2445|consen  286 DHNGEVWRVRWNMTGTILSSTGDDGCVRLWKAN  318 (361)
T ss_pred             CCCCceEEEEEeeeeeEEeecCCCceeeehhhh
Confidence            899999999999999999999999999999754

>KOG0269|consensus

Probab=99.93  E-value=9.3e-25  Score=207.27  Aligned_cols=274  Identities=22%  Similarity=0.464  Sum_probs=209.5

Q ss_pred             CceeEEeeCCCCCeEEEEeCCCeEEEEcCCCc-----ceeeccc---ccCCeEEEEEcc-CCCEEEEEecCCcEEEEeCC
Q psy12697        281 KDVTSLDWNNNGSFLATGSYDGYARIWTSDGS-----LKSTLGQ---HKGPIFALKWNK-RGNYILSAGVDKTTIIWDAA  351 (602)
Q Consensus       281 ~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~-----~~~~~~~---~~~~i~~~~~~~-~~~~l~~~~~dg~i~~wd~~  351 (602)
                      ....++..+++-..+++++.. .+.+|.....     .......   -...+..+.|.. +.++|++++..|.|.+||+.
T Consensus        40 ~~~nAIs~nr~~~qiv~AGrs-~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWdln  118 (839)
T KOG0269|consen   40 AKANAISVNRDINQIVVAGRS-LLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWDLN  118 (839)
T ss_pred             cccceEeecCCcceeEEeccc-ceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEEecC
Confidence            556778888887777777653 4556654311     1111111   112345677764 45789999999999999998


Q ss_pred             C---CceeEEeeeccCCeeeeeccCC--CeEEEeeCCCeEEEEEcCCCceeeEeccCCCCeEEEEECC-CCCEEEEEECC
Q psy12697        352 S---GQCEQQFSFHSAPALDVDWQSN--TSFASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDP-QGLLLASCSDD  425 (602)
Q Consensus       352 ~---~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d  425 (602)
                      .   .+.+..+..|...+.+++|++-  ..+++|+.||.|++||++..+...++.+....|+.+.|+| .+..++++.+.
T Consensus       119 k~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~ds  198 (839)
T KOG0269|consen  119 KSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDS  198 (839)
T ss_pred             ccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEEecCC
Confidence            7   5566678889999999999875  6799999999999999999999999999889999999999 67889999999


Q ss_pred             CeEEEEeCCCC-eeeEeeccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCCCeE
Q psy12697        426 MTLKIWSLDKD-NCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTT  504 (602)
Q Consensus       426 g~i~iwd~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i  504 (602)
                      |.+++||++.. ++...+                                  ..|.++|.++.|+|++.+|||||.|+.|
T Consensus       199 G~lqlWDlRqp~r~~~k~----------------------------------~AH~GpV~c~nwhPnr~~lATGGRDK~v  244 (839)
T KOG0269|consen  199 GYLQLWDLRQPDRCEKKL----------------------------------TAHNGPVLCLNWHPNREWLATGGRDKMV  244 (839)
T ss_pred             ceEEEeeccCchhHHHHh----------------------------------hcccCceEEEeecCCCceeeecCCCccE
Confidence            99999999854 333333                                  3466777777777788999999999999


Q ss_pred             EEEeCCCCceeeeecc-cCCCeeEeeecCCc--eEEEee--CCCcEEEeecCCC-CceeeeecccccceEEEEecCCcEE
Q psy12697        505 IIWDAASGQCEQQFSF-HSAPALDVDWQSNT--SFASCS--TDQHIHVCKLHSD-KPVKSFEGHTTGQLVHSYKGTGGIF  578 (602)
Q Consensus       505 ~iwd~~~~~~~~~~~~-~~~~v~~~~~s~~~--~l~~~~--~d~~i~iw~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~  578 (602)
                      +|||+.+++.-..... ...+|.++.|-|+.  .|++++  .|-.|+|||++.. -|-.++..|.           ..++
T Consensus       245 kiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~-----------~~vt  313 (839)
T KOG0269|consen  245 KIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHT-----------DSVT  313 (839)
T ss_pred             EEEeccCCCccceeEEeecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeeccC-----------cccc
Confidence            9999987654433322 35689999999998  788776  4788999999754 4555555554           6688


Q ss_pred             EEEECC-CCCeEEEeccCCeEEe
Q psy12697        579 EVCWNS-RGDKVGASASDGSVFK  600 (602)
Q Consensus       579 ~l~~sp-dg~~l~~~~~dg~v~i  600 (602)
                      .++|.. |...|.+++.||+|..
T Consensus       314 ~i~W~~~d~~~l~s~sKD~tv~q  336 (839)
T KOG0269|consen  314 GIAWDSGDRINLWSCSKDGTVLQ  336 (839)
T ss_pred             ceeccCCCceeeEeecCccHHHH
Confidence            899976 5567899999998753

>KOG1538|consensus

Probab=99.93  E-value=1.2e-22  Score=189.80  Aligned_cols=253  Identities=21%  Similarity=0.371  Sum_probs=200.8

Q ss_pred             ccceeeeecccceeeeeeeccCCceEEEEECCCCCeEEEeeCCceEEEEecCCceeEEEeeccCceEEEEeCCCCCCCCC
Q psy12697        119 RLTLPLWDVERGECLNTLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKGTGGIFEVCWNSRGTPPNP  198 (602)
Q Consensus       119 ~~~i~vwd~~~~~~~~~l~~h~~~V~~~~~s~d~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (602)
                      ...+.|||+..|..+++|++|.+.|.|++|+.||+.+|+|+.|..|.+|+..--..+                       
T Consensus        32 g~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~L-----------------------   88 (1081)
T KOG1538|consen   32 GSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGIL-----------------------   88 (1081)
T ss_pred             CCEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEeccccccee-----------------------
Confidence            356899999999999999999999999999999999999999999999986432211                       


Q ss_pred             CCCccccccccccCCcceEeeCCCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccC
Q psy12697        199 PESMEVDASIEIPQSKATKLIGHESEVFICAWNPVKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVP  278 (602)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (602)
                                         -..|.+.|.|+.|+|-...|++++-. ..-+|..+.......                  .
T Consensus        89 -------------------kYSH~D~IQCMsFNP~~h~LasCsLs-dFglWS~~qK~V~K~------------------k  130 (1081)
T KOG1538|consen   89 -------------------KYSHNDAIQCMSFNPITHQLASCSLS-DFGLWSPEQKSVSKH------------------K  130 (1081)
T ss_pred             -------------------eeccCCeeeEeecCchHHHhhhcchh-hccccChhhhhHHhh------------------h
Confidence                               13599999999999999999998763 467887765433211                  1


Q ss_pred             CCCceeEEeeCCCCCeEEEEeCCCeEEEEcCCCcceeecc---cccCCeEEEEEccCC-----CEEEEEecCCcEEEEeC
Q psy12697        279 SNKDVTSLDWNNNGSFLATGSYDGYARIWTSDGSLKSTLG---QHKGPIFALKWNKRG-----NYILSAGVDKTTIIWDA  350 (602)
Q Consensus       279 ~~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~---~~~~~i~~~~~~~~~-----~~l~~~~~dg~i~~wd~  350 (602)
                      ....+.+++|..||++++.|-.+|+|.+-+..++....+.   +..++|.+++|+|..     ..+++.....++.++.+
T Consensus       131 ss~R~~~CsWtnDGqylalG~~nGTIsiRNk~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~L  210 (1081)
T KOG1538|consen  131 SSSRIICCSWTNDGQYLALGMFNGTISIRNKNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQL  210 (1081)
T ss_pred             hheeEEEeeecCCCcEEEEeccCceEEeecCCCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEe
Confidence            1356899999999999999999999999998776655444   477899999999964     46778888888888876


Q ss_pred             CCCceeEEeeeccCCeeeeeccCCC-eEEEeeCCCeEEEEEcCCCceeeEeccCCCCeEEEEECCCCCEEEEEECCCeEE
Q psy12697        351 ASGQCEQQFSFHSAPALDVDWQSNT-SFASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLK  429 (602)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~  429 (602)
                      . |+.+..-..-.....|+.+.+++ .++.|+.|+.+.+|.- .|-.+.++......|..++..|+++.++.|+.||+|.
T Consensus       211 s-G~~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fTR-~GvrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiA  288 (1081)
T KOG1538|consen  211 S-GKQIGKDRALNFDPCCISYFTNGEYILLGGSDKQLSLFTR-DGVRLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIA  288 (1081)
T ss_pred             c-ceeecccccCCCCchhheeccCCcEEEEccCCCceEEEee-cCeEEeeccccceeEEEEEEccCCceEEEEEccCeee
Confidence            5 44433333333445677777765 5788999999999864 4445566666778999999999999999999999999


Q ss_pred             EEeCC
Q psy12697        430 IWSLD  434 (602)
Q Consensus       430 iwd~~  434 (602)
                      .|++-
T Consensus       289 CyNl~  293 (1081)
T KOG1538|consen  289 CYNLI  293 (1081)
T ss_pred             hhhhH
Confidence            99874

>KOG4328|consensus

Probab=99.92  E-value=2.5e-23  Score=185.82  Aligned_cols=310  Identities=21%  Similarity=0.269  Sum_probs=225.7

Q ss_pred             eecccceeeeeeeccCCceEEEEECCCC--CeEEEeeCCceEEEEecCCceeEEEeeccCceEEEEeCCCCCCCCCCCCc
Q psy12697        125 WDVERGECLNTLTRHTEPVYSVAFSPDG--KFLASGSFDKCVHIWSARTGQLVHSYKGTGGIFEVCWNSRGTPPNPPESM  202 (602)
Q Consensus       125 wd~~~~~~~~~l~~h~~~V~~~~~s~d~--~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  202 (602)
                      .|+.+-......+-|.+.|++++|+|..  +++|+|..-|.|-+||+.+.+..                           
T Consensus       171 l~l~~~~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d---------------------------  223 (498)
T KOG4328|consen  171 LDLDDYRILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKD---------------------------  223 (498)
T ss_pred             cccccceecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCc---------------------------
Confidence            4455566677788899999999999944  58889999999999999633221                           


Q ss_pred             cccccccccCCcceEeeCCCcceEEEEEcCCC-CEEEEeeCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCC
Q psy12697        203 EVDASIEIPQSKATKLIGHESEVFICAWNPVK-DFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNK  281 (602)
Q Consensus       203 ~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~-~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  281 (602)
                               ......+..|..+|.++.|+|.+ ..+++.+.||+|++-|++...........              ....
T Consensus       224 ---------~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~--------------~d~~  280 (498)
T KOG4328|consen  224 ---------KDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEGNISEEVLSLD--------------TDNI  280 (498)
T ss_pred             ---------cCceEEeccCCccccceEecCCChhheeeeccCceeeeeeecchhhHHHhhcC--------------ccce
Confidence                     11124456799999999999976 78999999999999999876543222111              1134


Q ss_pred             ceeEEeeCCCCCeEEEEeCCCeEEEEcCC--CcceeecccccCCeEEEEEccCC-CEEEEEecCCcEEEEeCCCCceeEE
Q psy12697        282 DVTSLDWNNNGSFLATGSYDGYARIWTSD--GSLKSTLGQHKGPIFALKWNKRG-NYILSAGVDKTTIIWDAASGQCEQQ  358 (602)
Q Consensus       282 ~i~~~~~~~~~~~l~~~~~dg~i~i~~~~--~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~~wd~~~~~~~~~  358 (602)
                      .+..+.|+.+...++.+..=|...+||.+  +.....+.-|...|.+++++|.. .+|++++.|++++|||++.......
T Consensus       281 ~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~s  360 (498)
T KOG4328|consen  281 WFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKAS  360 (498)
T ss_pred             eeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCC
Confidence            57888899888888888888899999976  45566677788999999999965 4688999999999999986432111


Q ss_pred             eeeccCCeeeeeccCCCeEEEeeCCCeEEEEEcCCCceeeEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEeCC----
Q psy12697        359 FSFHSAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLD----  434 (602)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~----  434 (602)
                                                           ++.....|...|.+..|||.+-.|++.+.|..|+|||..    
T Consensus       361 -------------------------------------p~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa  403 (498)
T KOG4328|consen  361 -------------------------------------PFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISA  403 (498)
T ss_pred             -------------------------------------cceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccc
Confidence                                                 122234588899999999988889999999999999974    


Q ss_pred             CCeeeEeeccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCce
Q psy12697        435 KDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQC  514 (602)
Q Consensus       435 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~~~~~~  514 (602)
                      ...+..++. |+..                            .+.--......|.|+..++++|-.-..|-|+|-..++.
T Consensus       404 ~~~p~~~I~-Hn~~----------------------------t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~  454 (498)
T KOG4328|consen  404 KDEPLGTIP-HNNR----------------------------TGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQM  454 (498)
T ss_pred             cCCccceee-ccCc----------------------------ccccccchhheeCCCccEEEEeccCcceeEEcCCCCEE
Confidence            222222221 1110                            00111223457888999999999999999999998887


Q ss_pred             eeeecccCC-CeeE-eeecCCc-eEEE-eeCCCcEEEeec
Q psy12697        515 EQQFSFHSA-PALD-VDWQSNT-SFAS-CSTDQHIHVCKL  550 (602)
Q Consensus       515 ~~~~~~~~~-~v~~-~~~s~~~-~l~~-~~~d~~i~iw~~  550 (602)
                      +..+..... .|.+ ..|+|-+ .+++ ++..|.|+||--
T Consensus       455 v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~vft~  494 (498)
T KOG4328|consen  455 VCELHDPESSTIPSVNEFHPMRDTLAAGGNSSGKIYVFTN  494 (498)
T ss_pred             eeeccCccccccccceeecccccceeccCCccceEEEEec
Confidence            777654333 4544 4789987 3554 456788998863

>KOG4378|consensus

Probab=99.92  E-value=9.5e-24  Score=190.21  Aligned_cols=289  Identities=18%  Similarity=0.280  Sum_probs=216.4

Q ss_pred             EeeCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEeeCCCCCe-EEEEeCCCeEEEEcCCCcc---e
Q psy12697        239 SGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSF-LATGSYDGYARIWTSDGSL---K  314 (602)
Q Consensus       239 s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-l~~~~~dg~i~i~~~~~~~---~  314 (602)
                      .++....+++||+............             . ....+.++.|+....+ ++..+.|..+++|...++.   .
T Consensus         7 ~aS~gd~~kl~D~s~~~~~~~~~~~-------------t-~~pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp   72 (673)
T KOG4378|consen    7 VASTGDKTKLSDFSDLETKSEYVHQ-------------T-AEPGDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVP   72 (673)
T ss_pred             eeccCCceEEeecccccCccccccC-------------C-CCCcceeeeccccceEEEeecCCceeEEEecccCCCCccc
Confidence            3334456999999876654322211             0 1233889999886642 2334567789999877652   1


Q ss_pred             eecccccCCeEEEEEccCCCEEEEEecCCcEEEEeCCCCceeEEeeeccCCeeeeeccCC-CeEEEeeCCCeEEEEEcCC
Q psy12697        315 STLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSN-TSFASCSTDQHIHVCKLHS  393 (602)
Q Consensus       315 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~i~d~~~  393 (602)
                      ..-......-.|++......++++|+..+.|+|||++...+.+.+..|...|+++.+... ..+++++..|.|.+..+.+
T Consensus        73 ~~~k~~gd~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t  152 (673)
T KOG4378|consen   73 RVRKLTGDNAFCVACASQSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKT  152 (673)
T ss_pred             eeeccccchHHHHhhhhcceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEeccc
Confidence            111112223344544455589999999999999999988888899999999999999765 6688899999999999999


Q ss_pred             CceeeEeccCCC-CeEEEEECCCCC-EEEEEECCCeEEEEeCCCCeeeEeeccccccEEEEEECCCCCCCCCCCcceeee
Q psy12697        394 DKPVKSFEGHTN-EVNAIKWDPQGL-LLASCSDDMTLKIWSLDKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFI  471 (602)
Q Consensus       394 ~~~~~~~~~~~~-~i~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~  471 (602)
                      +.....+....+ .|.-+.|+|..+ +|.+++++|.|.+||+....+...+.                            
T Consensus       153 ~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~----------------------------  204 (673)
T KOG4378|consen  153 KQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHAS----------------------------  204 (673)
T ss_pred             CccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchh----------------------------
Confidence            888777775533 466899999665 56678899999999998776655432                            


Q ss_pred             eeeccCCccCCeEEEEEcc-CCCEEEEEeCCCeEEEEeCCCCceeeeecccCCCeeEeeecCCc-eEEEeeCCCcEEEee
Q psy12697        472 LKSTLGQHKGPIFALKWNK-RGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNT-SFASCSTDQHIHVCK  549 (602)
Q Consensus       472 ~~~~~~~~~~~v~~i~~s~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~-~l~~~~~d~~i~iw~  549 (602)
                           ..|..+...|+|+| +..+|++.+.|..|.+||....+....+. ...|...++|+++| +|+.|...|.|..||
T Consensus       205 -----~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~-y~~Plstvaf~~~G~~L~aG~s~G~~i~YD  278 (673)
T KOG4378|consen  205 -----EAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLT-YSHPLSTVAFSECGTYLCAGNSKGELIAYD  278 (673)
T ss_pred             -----hhccCCcCcceecCCccceEEEecccceEEEeecccccccceee-ecCCcceeeecCCceEEEeecCCceEEEEe
Confidence                 12566666667776 55788999999999999999877776665 56789999999999 999999999999999


Q ss_pred             cCCC-CceeeeecccccceEEEEecCCcEEEEEECCCC
Q psy12697        550 LHSD-KPVKSFEGHTTGQLVHSYKGTGGIFEVCWNSRG  586 (602)
Q Consensus       550 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg  586 (602)
                      ++.. .|+..+..|.           ..|++++|-|.-
T Consensus       279 ~R~~k~Pv~v~sah~-----------~sVt~vafq~s~  305 (673)
T KOG4378|consen  279 MRSTKAPVAVRSAHD-----------ASVTRVAFQPSP  305 (673)
T ss_pred             cccCCCCceEeeecc-----------cceeEEEeeecc
Confidence            9875 5777777665           569999997754

>KOG0267|consensus

Probab=99.92  E-value=2e-25  Score=210.11  Aligned_cols=251  Identities=19%  Similarity=0.362  Sum_probs=213.8

Q ss_pred             CEEEEeeCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEeeCCCCCeEEEEeCCCeEEEEcCC-Ccc
Q psy12697        235 DFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFLATGSYDGYARIWTSD-GSL  313 (602)
Q Consensus       235 ~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~-~~~  313 (602)
                      .+++....+-.+++|+.....                      .|...+.++..-..++.+++|+.|-.+-+|... -..
T Consensus         5 ~~~m~~~~~t~Lr~~~~~~~~----------------------~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~   62 (825)
T KOG0267|consen    5 EFLMKTKRATKLRVWDTREFV----------------------AHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNA   62 (825)
T ss_pred             cccceeeeeeccccccchhhh----------------------hhhhhhceeeeeccceeeccCCCceeeccccccCCch
Confidence            345555566677888875432                      234667777776778899999999999999875 334


Q ss_pred             eeecccccCCeEEEEEccCCCEEEEEecCCcEEEEeCCCCceeEEeeeccCCeeeeeccCCCe-EEEeeCCCeEEEEEcC
Q psy12697        314 KSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTS-FASCSTDQHIHVCKLH  392 (602)
Q Consensus       314 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~i~d~~  392 (602)
                      ...+.+|..+|.++.|+++...|++|+.+|+|++||++..+.++++.+|...+..+.|+|-+. ++.|+.|..+.+||.+
T Consensus        63 i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~R  142 (825)
T KOG0267|consen   63 ITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIR  142 (825)
T ss_pred             hheeeccCCcceeeecCcchhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhh
Confidence            456789999999999999999999999999999999999999999999999999999999865 5678899999999999


Q ss_pred             CCceeeEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeeeEeeccccccEEEEEECCCCCCCCCCCcceeeee
Q psy12697        393 SDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFIL  472 (602)
Q Consensus       393 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~  472 (602)
                      ...+...+.+|...+..+.|+|+|++++++++|..++|||+..|+.+..|..|...+..+.|                  
T Consensus       143 k~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~------------------  204 (825)
T KOG0267|consen  143 KKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEF------------------  204 (825)
T ss_pred             ccCceeeecCCcceeEEEeecCCCceeeccCCcceeeeeccccccccccccccccccccccc------------------
Confidence            99999999999999999999999999999999999999999999998888876666555554                  


Q ss_pred             eeccCCccCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeeecccCCCeeEeeecCCc-eEEEeeC
Q psy12697        473 KSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNT-SFASCST  541 (602)
Q Consensus       473 ~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~-~l~~~~~  541 (602)
                                      +|..-++++|+.|+++++||+++.+.+.........|.+..|+|++ .+++|..
T Consensus       205 ----------------hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~~~~v~~~~fn~~~~~~~~G~q  258 (825)
T KOG0267|consen  205 ----------------HPLEVLLAPGSSDRTVRFWDLETFEVISSGKPETDGVRSLAFNPDGKIVLSGEQ  258 (825)
T ss_pred             ----------------CchhhhhccCCCCceeeeeccceeEEeeccCCccCCceeeeecCCceeeecCch
Confidence                            4455679999999999999999999998888888899999999999 5555443

>KOG2445|consensus

Probab=99.92  E-value=8.2e-23  Score=173.34  Aligned_cols=262  Identities=21%  Similarity=0.403  Sum_probs=190.6

Q ss_pred             ccccCCeEEEEEccCCCEEEEEecCCcEEEEeCCCC----ceeEEeeeccCCeeeeeccCC---CeEEEeeCCCeEEEEE
Q psy12697        318 GQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASG----QCEQQFSFHSAPALDVDWQSN---TSFASCSTDQHIHVCK  390 (602)
Q Consensus       318 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~~----~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~i~i~d  390 (602)
                      .+|..-|.++.|.+.|+++++++.|++++|||.+..    .+....+.|.+.+..+.|.+.   ..+++++.|+++.||.
T Consensus        10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWE   89 (361)
T KOG2445|consen   10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWE   89 (361)
T ss_pred             cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeee
Confidence            468888999999999999999999999999996543    456677889999999999775   5589999999999998


Q ss_pred             cCCC---------ceeeEeccCCCCeEEEEECC--CCCEEEEEECCCeEEEEeCCCCeeeEeeccccccEEEEEECCCCC
Q psy12697        391 LHSD---------KPVKSFEGHTNEVNAIKWDP--QGLLLASCSDDMTLKIWSLDKDNCVHDLQAHNKEIYTIKWSPTGP  459 (602)
Q Consensus       391 ~~~~---------~~~~~~~~~~~~i~~~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~  459 (602)
                      -...         ....++......|+.+.|.|  -|-.||+++.||.+|||+....-.+...... .++.         
T Consensus        90 E~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq-~Ei~---------  159 (361)
T KOG2445|consen   90 EQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQ-HEIQ---------  159 (361)
T ss_pred             ecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhh-hhhh---------
Confidence            6311         23456666778899999999  5778999999999999997654322221110 0000         


Q ss_pred             CCCCCCcceeeeeeeccCCccCCeEEEEEcc---CCCEEEEEeCC-----CeEEEEeCCCC----ceeeeecccCCCeeE
Q psy12697        460 ETSNPNMSLIFILKSTLGQHKGPIFALKWNK---RGNYILSAGVD-----KTTIIWDAASG----QCEQQFSFHSAPALD  527 (602)
Q Consensus       460 ~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~---~~~~l~s~~~d-----g~i~iwd~~~~----~~~~~~~~~~~~v~~  527 (602)
                                 .+..+...+..+..|+.|+|   ...+||.|+.+     +.++||....+    ..+.++.+|..+|++
T Consensus       160 -----------~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~d  228 (361)
T KOG2445|consen  160 -----------NVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRD  228 (361)
T ss_pred             -----------hccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCccee
Confidence                       00112333566667777776   34678888766     47889976543    345778899999999


Q ss_pred             eeecCCc-----eEEEeeCCCcEEEeecCCCC-ceee-------eecccccceEEEEec-CCcEEEEEECCCCCeEEEec
Q psy12697        528 VDWQSNT-----SFASCSTDQHIHVCKLHSDK-PVKS-------FEGHTTGQLVHSYKG-TGGIFEVCWNSRGDKVGASA  593 (602)
Q Consensus       528 ~~~s~~~-----~l~~~~~d~~i~iw~~~~~~-~~~~-------~~~~~~~~~~~~~~~-~~~i~~l~~spdg~~l~~~~  593 (602)
                      ++|.|+-     .||+++.|| |+||.++... ++..       ....-.-..+..+.. +++|..+.|+-.|..|++++
T Consensus       229 i~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStG  307 (361)
T KOG2445|consen  229 ISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTG  307 (361)
T ss_pred             eeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecC
Confidence            9999974     689999999 9999997422 1100       000011122233333 57999999999999999999


Q ss_pred             cCCeEEee
Q psy12697        594 SDGSVFKN  601 (602)
Q Consensus       594 ~dg~v~i~  601 (602)
                      +||+|+++
T Consensus       308 dDG~VRLW  315 (361)
T KOG2445|consen  308 DDGCVRLW  315 (361)
T ss_pred             CCceeeeh
Confidence            99999974

>KOG1445|consensus

Probab=99.92  E-value=5.6e-23  Score=190.75  Aligned_cols=209  Identities=19%  Similarity=0.241  Sum_probs=148.5

Q ss_pred             eEeeCCCcceEEEEEcCC-CCEEEEeeCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEeeCCCCCe
Q psy12697        216 TKLIGHESEVFICAWNPV-KDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSF  294 (602)
Q Consensus       216 ~~l~~h~~~v~~~~~~~~-~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  294 (602)
                      ..+.+|...|+.+.|+|- +.+|++|+.|..++||.+..+..........          ...+.+-.+.++.|+|...-
T Consensus        73 ~~l~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~LSape~----------~~g~~~~~vE~l~fHpTaDg  142 (1012)
T KOG1445|consen   73 GILAAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQKLSAPEI----------DVGGGNVIVECLRFHPTADG  142 (1012)
T ss_pred             ceeecccceeeccCccccchhhhhcccCCCeeEEEecCCCcccccCCcce----------eecCCceEEEEeecccCcCc
Confidence            567789999999999994 5789999999999999998543322111111          11123456899999997766


Q ss_pred             EEEEeCCCeEEEEcCC-CcceeecccccCCeEEEEEccCCCEEEEEecCCcEEEEeCCC-CceeEEeeeccCC-eeeeec
Q psy12697        295 LATGSYDGYARIWTSD-GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAAS-GQCEQQFSFHSAP-ALDVDW  371 (602)
Q Consensus       295 l~~~~~dg~i~i~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~-~~~~~~~~~~~~~-~~~~~~  371 (602)
                      |+..+..|.+++||+. ++....+.+|...|.+..|+.||..|++++.|..|+|||.+. ++.++....|.+. -..+.|
T Consensus       143 il~s~a~g~v~i~D~stqk~~~el~~h~d~vQSa~WseDG~llatscKdkqirifDPRa~~~piQ~te~H~~~rdsRv~w  222 (1012)
T KOG1445|consen  143 ILASGAHGSVYITDISTQKTAVELSGHTDKVQSADWSEDGKLLATSCKDKQIRIFDPRASMEPIQTTEGHGGMRDSRVLW  222 (1012)
T ss_pred             eEEeccCceEEEEEcccCceeecccCCchhhhccccccCCceEeeecCCcceEEeCCccCCCccccccccccchhheeee
Confidence            7777788999999987 667778899999999999999999999999999999999886 4556666666543 334566


Q ss_pred             cCC-CeEEEeeC----CCeEEEEEcCCC-ceeeEeccC-CCCeEEEEECCCCCEEEEEE-CCCeEEEEeCC
Q psy12697        372 QSN-TSFASCST----DQHIHVCKLHSD-KPVKSFEGH-TNEVNAIKWDPQGLLLASCS-DDMTLKIWSLD  434 (602)
Q Consensus       372 ~~~-~~~~~~~~----~~~i~i~d~~~~-~~~~~~~~~-~~~i~~~~~~~~~~~l~~~~-~dg~i~iwd~~  434 (602)
                      ..+ ..+++.+.    -..|++||.+.. .++.++.-. .-.|.---|+||.++|+.++ .+.++..+.+.
T Consensus       223 ~Gn~~rlisTGF~~~R~reV~~~Dtr~f~~p~~tleld~stGvLiPl~DpDt~llfLaGKG~~~l~~lE~~  293 (1012)
T KOG1445|consen  223 AGNWERLISTGFTTKRIREVRAYDTRKFGAPVHTLELDSSTGVLIPLYDPDTRLLFLAGKGTNKLFMLEMQ  293 (1012)
T ss_pred             ccchhhhhhcccchhhheeeeeeeccccCCcceeEEeecccceEeeeecCCCceEEEecCCcceEEEEEec
Confidence            665 23444433    357899998763 344444322 12344445788877766554 35667666654

>KOG0302|consensus

Probab=99.92  E-value=9.7e-24  Score=183.79  Aligned_cols=246  Identities=26%  Similarity=0.464  Sum_probs=186.5

Q ss_pred             cccccCCeEEEEEccCCC--EEEEEecCCcEEEEeCCC----------------CceeEEeeeccCCeeeeeccCC--Ce
Q psy12697        317 LGQHKGPIFALKWNKRGN--YILSAGVDKTTIIWDAAS----------------GQCEQQFSFHSAPALDVDWQSN--TS  376 (602)
Q Consensus       317 ~~~~~~~i~~~~~~~~~~--~l~~~~~dg~i~~wd~~~----------------~~~~~~~~~~~~~~~~~~~~~~--~~  376 (602)
                      ...|.+.++.+.-++-++  +.++=+..|.|.||++..                .+.+.++..|...-..++|+|-  +.
T Consensus       147 ~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~  226 (440)
T KOG0302|consen  147 SIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGR  226 (440)
T ss_pred             ccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccc
Confidence            345677777777766554  344445679999999753                2456677788888899999994  67


Q ss_pred             EEEeeCCCeEEEEEcCCCce---eeEeccCCCCeEEEEECCC-CCEEEEEECCCeEEEEeCCCCe---eeEeeccccccE
Q psy12697        377 FASCSTDQHIHVCKLHSDKP---VKSFEGHTNEVNAIKWDPQ-GLLLASCSDDMTLKIWSLDKDN---CVHDLQAHNKEI  449 (602)
Q Consensus       377 ~~~~~~~~~i~i~d~~~~~~---~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~---~~~~~~~~~~~i  449 (602)
                      +++|..-+.|++|...++.-   ...+.+|...|..++|||. ...|++||-||+|+|||++.+.   ++.+ +.     
T Consensus       227 LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~-kA-----  300 (440)
T KOG0302|consen  227 LLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVST-KA-----  300 (440)
T ss_pred             cccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEe-ec-----
Confidence            99999999999999988653   2346679999999999994 4689999999999999999873   2222 33     


Q ss_pred             EEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCCCeEEEEeCCC---CceeeeecccCCCee
Q psy12697        450 YTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAAS---GQCEQQFSFHSAPAL  526 (602)
Q Consensus       450 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~~~---~~~~~~~~~~~~~v~  526 (602)
                                                   |.+.|+.|.|+.+-.+||+|+.||+++|||++.   ++++..|+.|..+|+
T Consensus       301 -----------------------------h~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pIt  351 (440)
T KOG0302|consen  301 -----------------------------HNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPIT  351 (440)
T ss_pred             -----------------------------cCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCee
Confidence                                         555666666666767899999999999999875   577899999999999


Q ss_pred             EeeecCCc--eEEEeeCCCcEEEeecCCCCcee-----eeec--ccccceEEEEecCCcEEEEEECCCC-CeEEEeccCC
Q psy12697        527 DVDWQSNT--SFASCSTDQHIHVCKLHSDKPVK-----SFEG--HTTGQLVHSYKGTGGIFEVCWNSRG-DKVGASASDG  596 (602)
Q Consensus       527 ~~~~s~~~--~l~~~~~d~~i~iw~~~~~~~~~-----~~~~--~~~~~~~~~~~~~~~i~~l~~spdg-~~l~~~~~dg  596 (602)
                      ++.|+|..  .|++++.|.+|.+||+.-..-.-     ...+  ....+++....++..+..|.|++.- .+|++.+-||
T Consensus       352 sieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dG  431 (440)
T KOG0302|consen  352 SIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDG  431 (440)
T ss_pred             EEEeccccCceEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccc
Confidence            99999976  89999999999999996432210     0011  1123345555567789999999975 4677777788


Q ss_pred             e
Q psy12697        597 S  597 (602)
Q Consensus       597 ~  597 (602)
                      .
T Consensus       432 f  432 (440)
T KOG0302|consen  432 F  432 (440)
T ss_pred             e
Confidence            4

>KOG0650|consensus

Probab=99.92  E-value=3.7e-23  Score=190.72  Aligned_cols=318  Identities=21%  Similarity=0.327  Sum_probs=230.5

Q ss_pred             cCCcceEeeCCCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEeeCC
Q psy12697        211 PQSKATKLIGHESEVFICAWNPVKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNN  290 (602)
Q Consensus       211 ~~~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  290 (602)
                      +......+.||++.|.+++..|.|.+|++|+.||+++||.+.++.+.....+                 ...|.|++|+|
T Consensus       389 Pt~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~-----------------d~~I~~vaw~P  451 (733)
T KOG0650|consen  389 PTRCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQF-----------------DSEIRSVAWNP  451 (733)
T ss_pred             cceeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEee-----------------cceeEEEEecC
Confidence            4455677889999999999999999999999999999999999987533222                 46799999999


Q ss_pred             CCCe--EEEEeCCCeEEEEcCC-CcceeecccccCCeEEEEEccCCCEEEEE----ecCCcEEEEeCCCCc----eeEEe
Q psy12697        291 NGSF--LATGSYDGYARIWTSD-GSLKSTLGQHKGPIFALKWNKRGNYILSA----GVDKTTIIWDAASGQ----CEQQF  359 (602)
Q Consensus       291 ~~~~--l~~~~~dg~i~i~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~----~~dg~i~~wd~~~~~----~~~~~  359 (602)
                      .+..  ||++.. ..+.+.+.. |..+..     +        +....|.++    ..++.+..|.-....    -+...
T Consensus       452 ~~~~~vLAvA~~-~~~~ivnp~~G~~~e~-----~--------~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~  517 (733)
T KOG0650|consen  452 LSDLCVLAVAVG-ECVLIVNPIFGDRLEV-----G--------PTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIV  517 (733)
T ss_pred             CCCceeEEEEec-CceEEeCccccchhhh-----c--------chhhhhhcCCCccCCcccceeechhhhhhhccceEEE
Confidence            7653  444433 335555532 211100     0        001111111    224566777544221    13344


Q ss_pred             eeccCCeeeeeccCCCe-EEEeeC---CCeEEEEEcCCCceeeEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEeCCC
Q psy12697        360 SFHSAPALDVDWQSNTS-FASCST---DQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDK  435 (602)
Q Consensus       360 ~~~~~~~~~~~~~~~~~-~~~~~~---~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~  435 (602)
                      -.+...+..+.|+..+. |++...   ...|.|.++...+...-|....+.|.++.|+|...+|++++. ..|+|||+..
T Consensus       518 I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq-~~vRiYdL~k  596 (733)
T KOG0650|consen  518 IKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQ-RSVRIYDLSK  596 (733)
T ss_pred             EecCCccceeeeecCCceEEEeccCCCcceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEec-cceEEEehhH
Confidence            55778899999998765 444333   357899999877766666666778999999999999999877 4699999988


Q ss_pred             CeeeEeeccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCC-ce
Q psy12697        436 DNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASG-QC  514 (602)
Q Consensus       436 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~~~~-~~  514 (602)
                      .+.+..+....                                  ..|..++.+|.|.-|+.|+.|+.+..+|+.-. ++
T Consensus       597 qelvKkL~tg~----------------------------------kwiS~msihp~GDnli~gs~d~k~~WfDldlsskP  642 (733)
T KOG0650|consen  597 QELVKKLLTGS----------------------------------KWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKP  642 (733)
T ss_pred             HHHHHHHhcCC----------------------------------eeeeeeeecCCCCeEEEecCCCeeEEEEcccCcch
Confidence            77666655433                                  34556667778888999999999999999754 56


Q ss_pred             eeeecccCCCeeEeeecCCc-eEEEeeCCCcEEEeecCCC---------CceeeeecccccceEEEEecCCcEEEEEECC
Q psy12697        515 EQQFSFHSAPALDVDWQSNT-SFASCSTDQHIHVCKLHSD---------KPVKSFEGHTTGQLVHSYKGTGGIFEVCWNS  584 (602)
Q Consensus       515 ~~~~~~~~~~v~~~~~s~~~-~l~~~~~d~~i~iw~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp  584 (602)
                      .+++..|...+++++|++.- ++++|+.||++.|+--.-.         -++..+.+|...       ....|.+..|+|
T Consensus       643 yk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~-------~~~gVLd~~wHP  715 (733)
T KOG0650|consen  643 YKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKT-------NDLGVLDTIWHP  715 (733)
T ss_pred             hHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceee-------cccceEeecccC
Confidence            78899999999999999998 9999999999998853211         144555555411       235688899999


Q ss_pred             CCCeEEEeccCCeEEee
Q psy12697        585 RGDKVGASASDGSVFKN  601 (602)
Q Consensus       585 dg~~l~~~~~dg~v~i~  601 (602)
                      ...+|++++.||+|++.
T Consensus       716 ~qpWLfsAGAd~tirlf  732 (733)
T KOG0650|consen  716 RQPWLFSAGADGTIRLF  732 (733)
T ss_pred             CCceEEecCCCceEEee
Confidence            99999999999999874

>KOG4328|consensus

Probab=99.92  E-value=3.6e-23  Score=184.86  Aligned_cols=282  Identities=17%  Similarity=0.267  Sum_probs=210.7

Q ss_pred             CCCceeEEeeCCCC--CeEEEEeCCCeEEEEcCCC-----cceeecccccCCeEEEEEccC-CCEEEEEecCCcEEEEeC
Q psy12697        279 SNKDVTSLDWNNNG--SFLATGSYDGYARIWTSDG-----SLKSTLGQHKGPIFALKWNKR-GNYILSAGVDKTTIIWDA  350 (602)
Q Consensus       279 ~~~~i~~~~~~~~~--~~l~~~~~dg~i~i~~~~~-----~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~i~~wd~  350 (602)
                      +.++|++++|+|..  +++++|...|.|-+||+.+     ..+..+..|..+|.++.|+|. ...+++.+.||+|++-|+
T Consensus       185 ~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~  264 (498)
T KOG4328|consen  185 TDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDF  264 (498)
T ss_pred             cccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCceeeeeee
Confidence            36889999999954  5889999999999999852     345567789999999999994 468999999999999999


Q ss_pred             CCCceeEEeee--ccCCeeeeeccCC-CeEEEeeCCCeEEEEEcCCCce-eeEeccCCCCeEEEEECC-CCCEEEEEECC
Q psy12697        351 ASGQCEQQFSF--HSAPALDVDWQSN-TSFASCSTDQHIHVCKLHSDKP-VKSFEGHTNEVNAIKWDP-QGLLLASCSDD  425 (602)
Q Consensus       351 ~~~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~~~~~~i~i~d~~~~~~-~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d  425 (602)
                      +.+.....+..  .......+.++.+ ..++.+..=|...+||+++++. ...+.-|...|++++++| ...+||+++.|
T Consensus       265 ~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D  344 (498)
T KOG4328|consen  265 EGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATASLD  344 (498)
T ss_pred             cchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchheeecccC
Confidence            88754444443  3444556666655 4577777778999999998764 667778889999999999 45679999999


Q ss_pred             CeEEEEeCCCCeeeEeeccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCCCeEE
Q psy12697        426 MTLKIWSLDKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTI  505 (602)
Q Consensus       426 g~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~  505 (602)
                      ++.+|||++.......      ++                        .....|...|.+..|||.+-.|++.+.|..|+
T Consensus       345 ~T~kIWD~R~l~~K~s------p~------------------------lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IR  394 (498)
T KOG4328|consen  345 QTAKIWDLRQLRGKAS------PF------------------------LSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIR  394 (498)
T ss_pred             cceeeeehhhhcCCCC------cc------------------------eecccccceeeeeEEcCCCCceEeeccCCceE
Confidence            9999999986432221      10                        01224788899999999877799999999999


Q ss_pred             EEeCC----CCceeeeecccCC------CeeEeeecCCc-eEEEeeCCCcEEEeecCCCCceeeeecccccceEEEEecC
Q psy12697        506 IWDAA----SGQCEQQFSFHSA------PALDVDWQSNT-SFASCSTDQHIHVCKLHSDKPVKSFEGHTTGQLVHSYKGT  574 (602)
Q Consensus       506 iwd~~----~~~~~~~~~~~~~------~v~~~~~s~~~-~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~  574 (602)
                      |||..    .-.+..++. |..      ......|.|+. ++++|..-..|-|+|-..++.+..+....          .
T Consensus       395 v~dss~~sa~~~p~~~I~-Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~----------~  463 (498)
T KOG4328|consen  395 VFDSSCISAKDEPLGTIP-HNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPE----------S  463 (498)
T ss_pred             EeecccccccCCccceee-ccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCcc----------c
Confidence            99983    233333333 332      24567899998 99999999999999977776666654332          1


Q ss_pred             CcEEE-EEECCCCC-eEEEeccCCeEEee
Q psy12697        575 GGIFE-VCWNSRGD-KVGASASDGSVFKN  601 (602)
Q Consensus       575 ~~i~~-l~~spdg~-~l~~~~~dg~v~i~  601 (602)
                      ..|.+ ..|+|-+. +++-++..|.|+|.
T Consensus       464 ~tI~~vn~~HP~~~~~~aG~~s~Gki~vf  492 (498)
T KOG4328|consen  464 STIPSVNEFHPMRDTLAAGGNSSGKIYVF  492 (498)
T ss_pred             cccccceeecccccceeccCCccceEEEE
Confidence            23444 46999998 55555557777763

>KOG4378|consensus

Probab=99.92  E-value=7.8e-23  Score=184.35  Aligned_cols=261  Identities=19%  Similarity=0.305  Sum_probs=204.8

Q ss_pred             eEEEEEcCCCC-EEEEeeCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEeeCCCCCeEEEEeCCCe
Q psy12697        225 VFICAWNPVKD-FLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFLATGSYDGY  303 (602)
Q Consensus       225 v~~~~~~~~~~-~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~  303 (602)
                      +.++.|+.... .+++.+.|..+++|.-......    .+....          .....-.|++......++++|+..+.
T Consensus        37 ~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~----Vp~~~k----------~~gd~~~Cv~~~s~S~y~~sgG~~~~  102 (673)
T KOG4378|consen   37 DFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPE----VPRVRK----------LTGDNAFCVACASQSLYEISGGQSGC  102 (673)
T ss_pred             ceeeeccccceEEEeecCCceeEEEecccCCCCc----cceeec----------cccchHHHHhhhhcceeeeccCcCce
Confidence            88888887664 3344566889999975443111    111100          01234456666566689999999999


Q ss_pred             EEEEcCCCcc-eeecccccCCeEEEEEccCCCEEEEEecCCcEEEEeCCCCceeEEeeeccC-CeeeeeccCCCe--EEE
Q psy12697        304 ARIWTSDGSL-KSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSA-PALDVDWQSNTS--FAS  379 (602)
Q Consensus       304 i~i~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~  379 (602)
                      |+|||++.++ .+.+..|...|+++.++-...||++++..|.|.+..+.++.....+....+ .+.-+.|++..+  +.+
T Consensus       103 Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~  182 (673)
T KOG4378|consen  103 VKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSI  182 (673)
T ss_pred             eeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEe
Confidence            9999998554 455778999999999999999999999999999999999988888876644 455778888644  678


Q ss_pred             eeCCCeEEEEEcCCCceeeEe-ccCCCCeEEEEECC-CCCEEEEEECCCeEEEEeCCCCeeeEeeccccccEEEEEECCC
Q psy12697        380 CSTDQHIHVCKLHSDKPVKSF-EGHTNEVNAIKWDP-QGLLLASCSDDMTLKIWSLDKDNCVHDLQAHNKEIYTIKWSPT  457 (602)
Q Consensus       380 ~~~~~~i~i~d~~~~~~~~~~-~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~  457 (602)
                      ++.+|.|.+||+....++..+ ..|..+...|+|+| +..+|++.+.|..|.+||.+..+....+.              
T Consensus       183 asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~--------------  248 (673)
T KOG4378|consen  183 ASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLT--------------  248 (673)
T ss_pred             eccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccccceee--------------
Confidence            889999999999988877554 57899999999999 56788999999999999998765544432              


Q ss_pred             CCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCCCeEEEEeCCC-CceeeeecccCCCeeEeeecCCc
Q psy12697        458 GPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAAS-GQCEQQFSFHSAPALDVDWQSNT  534 (602)
Q Consensus       458 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~v~~~~~s~~~  534 (602)
                                           ...+...++|+++|.+|+.|...|.|..||++. ..++..+..|...|++++|-|.-
T Consensus       249 ---------------------y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~s~  305 (673)
T KOG4378|consen  249 ---------------------YSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDASVTRVAFQPSP  305 (673)
T ss_pred             ---------------------ecCCcceeeecCCceEEEeecCCceEEEEecccCCCCceEeeecccceeEEEeeecc
Confidence                                 245677899999999999999999999999985 45778889999999999997653

>KOG0321|consensus

Probab=99.91  E-value=2.4e-23  Score=193.46  Aligned_cols=303  Identities=17%  Similarity=0.264  Sum_probs=206.4

Q ss_pred             eccceeeeeccccee------eeeeeccCCceEEEEECCCCCeEEEeeCCceEEEEecCCceeEEEeeccCceEEEEeCC
Q psy12697        118 HRLTLPLWDVERGEC------LNTLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKGTGGIFEVCWNS  191 (602)
Q Consensus       118 ~~~~i~vwd~~~~~~------~~~l~~h~~~V~~~~~s~d~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~  191 (602)
                      .++.|.++|......      ++....|.+.|..+.|-|....|++++.|.++++||+.+++++..              
T Consensus        72 E~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~--------------  137 (720)
T KOG0321|consen   72 EDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGG--------------  137 (720)
T ss_pred             CCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecc--------------
Confidence            457788888765432      355667999999999999777899999999999999999887742              


Q ss_pred             CCCCCCCCCCccccccccccCCcceEeeCCCcceEEEEEcCCC-CEEEEeeCCCcEEEEeCCCCCCCCCccceEEEEEEe
Q psy12697        192 RGTPPNPPESMEVDASIEIPQSKATKLIGHESEVFICAWNPVK-DFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCI  270 (602)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~-~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~  270 (602)
                                              ..+.||...|.+++|.|++ ..|++|+.||.|.|||+............       
T Consensus       138 ------------------------~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~-------  186 (720)
T KOG0321|consen  138 ------------------------RLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFD-------  186 (720)
T ss_pred             ------------------------eeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHh-------
Confidence                                    3467899999999999977 68889999999999999765421111000       


Q ss_pred             cCCCcccCCCCceeEEeeCCCCCeEEEEeCCCeEEEEcCCCcceeecccccCCeEE---EEEccCCCEEEEEec-CCcEE
Q psy12697        271 SKGGTEVPSNKDVTSLDWNNNGSFLATGSYDGYARIWTSDGSLKSTLGQHKGPIFA---LKWNKRGNYILSAGV-DKTTI  346 (602)
Q Consensus       271 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~i~~---~~~~~~~~~l~~~~~-dg~i~  346 (602)
                                             ..+++...+.-.=-....+.......+...|.+   +-+..|...|++++. |+.|+
T Consensus       187 -----------------------~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iK  243 (720)
T KOG0321|consen  187 -----------------------NRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIK  243 (720)
T ss_pred             -----------------------hhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceE
Confidence                                   000111111000000000111122233344444   445567788998887 99999


Q ss_pred             EEeCCCCceeEEeeeccCCeeeeeccCCCeEEEeeCCCeEEEEEcCCCceeeEeccC---CCCeEEEEECCCCCEEEEEE
Q psy12697        347 IWDAASGQCEQQFSFHSAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEGH---TNEVNAIKWDPQGLLLASCS  423 (602)
Q Consensus       347 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~---~~~i~~~~~~~~~~~l~~~~  423 (602)
                      +||++..........  ..                               ...+..|   .-.+.++..+..|.+|.+.+
T Consensus       244 VWDLRk~~~~~r~ep--~~-------------------------------~~~~~t~skrs~G~~nL~lDssGt~L~AsC  290 (720)
T KOG0321|consen  244 VWDLRKNYTAYRQEP--RG-------------------------------SDKYPTHSKRSVGQVNLILDSSGTYLFASC  290 (720)
T ss_pred             EEeecccccccccCC--Cc-------------------------------ccCccCcccceeeeEEEEecCCCCeEEEEe
Confidence            999987654332210  00                               0111112   23478888888899998888


Q ss_pred             CCCeEEEEeCCCCe--eeEeeccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCC
Q psy12697        424 DDMTLKIWSLDKDN--CVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVD  501 (602)
Q Consensus       424 ~dg~i~iwd~~~~~--~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d  501 (602)
                      .|+.|++|++.+..  ++..+.++..                                ...-..-..+||+.++++|+.|
T Consensus       291 tD~sIy~ynm~s~s~sP~~~~sg~~~--------------------------------~sf~vks~lSpd~~~l~SgSsd  338 (720)
T KOG0321|consen  291 TDNSIYFYNMRSLSISPVAEFSGKLN--------------------------------SSFYVKSELSPDDCSLLSGSSD  338 (720)
T ss_pred             cCCcEEEEeccccCcCchhhccCccc--------------------------------ceeeeeeecCCCCceEeccCCC
Confidence            89999999997532  2222221111                                0111223467899999999999


Q ss_pred             CeEEEEeCCCCce-eeeecccCCCeeEeeecCCc--eEEEeeCCCcEEEeecCCC
Q psy12697        502 KTTIIWDAASGQC-EQQFSFHSAPALDVDWQSNT--SFASCSTDQHIHVCKLHSD  553 (602)
Q Consensus       502 g~i~iwd~~~~~~-~~~~~~~~~~v~~~~~s~~~--~l~~~~~d~~i~iw~~~~~  553 (602)
                      ...++|.+.+.+. ...+.+|.-.|++++|.|..  -+++++.|..+++|++..+
T Consensus       339 ~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~  393 (720)
T KOG0321|consen  339 EQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNG  393 (720)
T ss_pred             cceeeeeecCccCChhhhhCcceEEEEEeeccccCCCceeeccCcceEEEeccCc
Confidence            9999999987654 46778899999999998876  8999999999999999765

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.91  E-value=6.9e-20  Score=184.43  Aligned_cols=362  Identities=30%  Similarity=0.537  Sum_probs=273.8

Q ss_pred             eeeccCCceEEEEECCCCCeEEEeeCCceEEEEecCCce-eEEEeeccCceEEEEeCCCCCCCCCCCCccccccccccCC
Q psy12697        135 TLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQ-LVHSYKGTGGIFEVCWNSRGTPPNPPESMEVDASIEIPQS  213 (602)
Q Consensus       135 ~l~~h~~~V~~~~~s~d~~~l~s~~~d~~v~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  213 (602)
                      .+..|...|.++.|.+.+..++.++.|+.+.+|+...+. .+..+.                                  
T Consensus        60 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~----------------------------------  105 (466)
T COG2319          60 LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLE----------------------------------  105 (466)
T ss_pred             eeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEe----------------------------------
Confidence            567899999999999999999999999999999998876 443322                                  


Q ss_pred             cceEeeCCC-cceEEEEE-cCCCC-EEEEeeC-CCcEEEEeCCC-CCCCCCccceEEEEEEecCCCcccCCCCceeEEee
Q psy12697        214 KATKLIGHE-SEVFICAW-NPVKD-FLASGSG-DSTARIWDMTD-STKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDW  288 (602)
Q Consensus       214 ~~~~l~~h~-~~v~~~~~-~~~~~-~l~s~~~-dg~i~iw~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  288 (602)
                            ++. ..+..+.+ .+++. .++..+. |+.+.+|++.. ....     .           ....|...|..++|
T Consensus       106 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~-----~-----------~~~~~~~~v~~~~~  163 (466)
T COG2319         106 ------GLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLI-----R-----------TLEGHSESVTSLAF  163 (466)
T ss_pred             ------ccCCCceeeEEEECCCcceEEeccCCCCccEEEEEecCCCeEE-----E-----------EEecCcccEEEEEE
Confidence                  222 35666666 77777 5555455 99999999986 2111     1           11234678899999


Q ss_pred             CCCCCeEEEEeC-CCeEEEEcCC-CcceeecccccCCeEEEEEccCCC-EEEEEecCCcEEEEeCCCCceeE-EeeeccC
Q psy12697        289 NNNGSFLATGSY-DGYARIWTSD-GSLKSTLGQHKGPIFALKWNKRGN-YILSAGVDKTTIIWDAASGQCEQ-QFSFHSA  364 (602)
Q Consensus       289 ~~~~~~l~~~~~-dg~i~i~~~~-~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~~wd~~~~~~~~-~~~~~~~  364 (602)
                      +|++..+++++. ++.+++|+.. +.....+..|...+.+++|+|++. .+++++.|+.+++||...+.... .+..+..
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~  243 (466)
T COG2319         164 SPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSD  243 (466)
T ss_pred             CCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCc
Confidence            999998888886 9999999987 467777888999999999999998 55555899999999998887777 5777766


Q ss_pred             CeeeeeccCCC-eEEEeeCCCeEEEEEcCCCce-eeEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeeeEee
Q psy12697        365 PALDVDWQSNT-SFASCSTDQHIHVCKLHSDKP-VKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHDL  442 (602)
Q Consensus       365 ~~~~~~~~~~~-~~~~~~~~~~i~i~d~~~~~~-~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~  442 (602)
                      .. ...|++++ .+++++.++.+++|+...... ...+.+|...+.++.|+|++..+++++.|+.+++||..........
T Consensus       244 ~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~  322 (466)
T COG2319         244 SV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSL  322 (466)
T ss_pred             ce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEe
Confidence            64 33788876 777899999999999987765 4455678899999999998889999999999999998877655554


Q ss_pred             c--cccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEE-eCCCeEEEEeCCCCceeeeec
Q psy12697        443 Q--AHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSA-GVDKTTIIWDAASGQCEQQFS  519 (602)
Q Consensus       443 ~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~  519 (602)
                      .  .|                                  ...+..+.|.+++..++.+ ..|+.+.+|+...........
T Consensus       323 ~~~~~----------------------------------~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~  368 (466)
T COG2319         323 TLKGH----------------------------------EGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLE  368 (466)
T ss_pred             eeccc----------------------------------CCceEEEEECCCCCEEEEeecCCCcEEeeecCCCceeEEec
Confidence            3  33                                  3345555552232455555 678999999998877333333


Q ss_pred             ccCCCeeEeeecCCc-eEEE-eeCCCcEEEeecCCCCceeeeecccccceEEEEecCCcEEEEEECCCCCeEEEeccCCe
Q psy12697        520 FHSAPALDVDWQSNT-SFAS-CSTDQHIHVCKLHSDKPVKSFEGHTTGQLVHSYKGTGGIFEVCWNSRGDKVGASASDGS  597 (602)
Q Consensus       520 ~~~~~v~~~~~s~~~-~l~~-~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~  597 (602)
                      ... .+..+.+++ . .++. +..++.+.+|+..............           ..+....+++++..++.++.++.
T Consensus       369 ~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~  435 (466)
T COG2319         369 GHS-NVLSVSFSP-DGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHT-----------SRVTSLDFSPDGKSLASGSSDNT  435 (466)
T ss_pred             CCc-eEEEEEECC-CCCEEEEecCCCceEEEecccCeeeeeccCCC-----------CcEEEEEECCCCcEEEEecCCCc
Confidence            222 278888888 5 4444 7899999999987665554443321           56888999999999999888887


Q ss_pred             EEe
Q psy12697        598 VFK  600 (602)
Q Consensus       598 v~i  600 (602)
                      +.+
T Consensus       436 ~~~  438 (466)
T COG2319         436 IRL  438 (466)
T ss_pred             EEE
Confidence            765

>KOG1009|consensus

Probab=99.91  E-value=3e-22  Score=176.41  Aligned_cols=350  Identities=20%  Similarity=0.281  Sum_probs=225.8

Q ss_pred             cCCceEEEEECCCCC-eEEEeeCCceEEEEecCCceeEEEeeccCceEEEEeCCCCCCCCCCCCccccccccccCCcceE
Q psy12697        139 HTEPVYSVAFSPDGK-FLASGSFDKCVHIWSARTGQLVHSYKGTGGIFEVCWNSRGTPPNPPESMEVDASIEIPQSKATK  217 (602)
Q Consensus       139 h~~~V~~~~~s~d~~-~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  217 (602)
                      ...+|..+.|.++.. .||||+.|..|+||-+..+..-.      +...+                         .....
T Consensus        12 ~~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~------~~~~V-------------------------~y~s~   60 (434)
T KOG1009|consen   12 DHEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGG------GDMKV-------------------------EYLSS   60 (434)
T ss_pred             CCCceEEEEeccCcccceecccCccceeeeeeeecCCCC------CceeE-------------------------EEeec
Confidence            346788899998776 99999999999999886543211      00000                         11256


Q ss_pred             eeCCCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEeeCCCCCeEEE
Q psy12697        218 LIGHESEVFICAWNPVKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFLAT  297 (602)
Q Consensus       218 l~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~  297 (602)
                      |..|...|+++.|+|+|+.|++|+.+|.+.+|....-........................|...|..++|+|++.++++
T Consensus        61 Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s  140 (434)
T KOG1009|consen   61 LSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVS  140 (434)
T ss_pred             ccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeee
Confidence            78899999999999999999999999999999876311100000000000000001122347789999999999999999


Q ss_pred             EeCCCeEEEEcCC-CcceeecccccCCeEEEEEccCCCEEEEEecCCcEEEEeCCCCceeEEeeeccCCeeeeeccCCCe
Q psy12697        298 GSYDGYARIWTSD-GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTS  376 (602)
Q Consensus       298 ~~~dg~i~i~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~  376 (602)
                      ++.|..+++||+. |.....+..|...+..++|.|-++++++-+.|...+.+.+...+........  ....-...+   
T Consensus       141 ~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~--~m~~~~~~~---  215 (434)
T KOG1009|consen  141 GSVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLD--IMPAKAFNE---  215 (434)
T ss_pred             eeccceEEEEEeccceeEeeccccccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeee--EeeecccCC---
Confidence            9999999999987 7888899999999999999999999999999987777766554433322210  000000000   


Q ss_pred             EEEeeCCCeEEEEEcCCCceeeEeccCCCCeEEEEECCCCCEEEEEEC----CC-----eEEEEeCCC-CeeeEeecccc
Q psy12697        377 FASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSD----DM-----TLKIWSLDK-DNCVHDLQAHN  446 (602)
Q Consensus       377 ~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~----dg-----~i~iwd~~~-~~~~~~~~~~~  446 (602)
                          ......+++.-++.+         .-...++|+|+|.+|++.+.    .+     ..++|+-.. .++...+....
T Consensus       216 ----~e~~s~rLfhDeTlk---------sFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~  282 (434)
T KOG1009|consen  216 ----REGKSTRLFHDETLK---------SFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPK  282 (434)
T ss_pred             ----CCcceeeeeecCchh---------hhhhhcccCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCCC
Confidence                011122233222211         12456889999999988642    12     233444321 24455556666


Q ss_pred             ccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeeec-ccCCCe
Q psy12697        447 KEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFS-FHSAPA  525 (602)
Q Consensus       447 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~v  525 (602)
                      .+...+.++|---.            ...+.....    +.--|-+-.+|.+.. ..|++||.++..++.... .|-..+
T Consensus       283 k~~lavr~~pVy~e------------lrp~~~~~~----~~~lpyrlvfaiAt~-~svyvydtq~~~P~~~v~nihy~~i  345 (434)
T KOG1009|consen  283 KPALAVRFSPVYYE------------LRPLSSEKF----LFVLPYRLVFAIATK-NSVYVYDTQTLEPLAVVDNIHYSAI  345 (434)
T ss_pred             cceEEEEeeeeEEE------------ecccccccc----ccccccceEEEEeec-ceEEEeccccccceEEEeeeeeeee
Confidence            66666766662110            000000000    111234444556654 459999999888776554 478899


Q ss_pred             eEeeecCCc-eEEEeeCCCcEEEeecCCCC
Q psy12697        526 LDVDWQSNT-SFASCSTDQHIHVCKLHSDK  554 (602)
Q Consensus       526 ~~~~~s~~~-~l~~~~~d~~i~iw~~~~~~  554 (602)
                      ++++|++|| .++..+.||...+-.++..+
T Consensus       346 TDiaws~dg~~l~vSS~DGyCS~vtfe~~e  375 (434)
T KOG1009|consen  346 TDIAWSDDGSVLLVSSTDGFCSLVTFEPWE  375 (434)
T ss_pred             cceeecCCCcEEEEeccCCceEEEEEcchh
Confidence            999999999 99999999988777766544

>KOG0270|consensus

Probab=99.91  E-value=1.8e-22  Score=179.87  Aligned_cols=241  Identities=21%  Similarity=0.380  Sum_probs=186.8

Q ss_pred             eeEEeeCC-------CCCeEEEEeCCCeEEEEcCCC--c--cee------------------ecccccCCeEEEEEccCC
Q psy12697        283 VTSLDWNN-------NGSFLATGSYDGYARIWTSDG--S--LKS------------------TLGQHKGPIFALKWNKRG  333 (602)
Q Consensus       283 i~~~~~~~-------~~~~l~~~~~dg~i~i~~~~~--~--~~~------------------~~~~~~~~i~~~~~~~~~  333 (602)
                      ..|++|..       -|+++|.|+.|..|.|||++-  .  ...                  ...+|...|..+.|+..-
T Consensus       176 PLC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~  255 (463)
T KOG0270|consen  176 PLCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNF  255 (463)
T ss_pred             chhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhcccc
Confidence            35666643       368999999999999999651  0  000                  122588888889888754


Q ss_pred             -CEEEEEecCCcEEEEeCCCCceeEEeeeccCCeeeeeccCC--CeEEEeeCCCeEEEEEcCCCceeeEeccCCCCeEEE
Q psy12697        334 -NYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSN--TSFASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAI  410 (602)
Q Consensus       334 -~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~  410 (602)
                       +.|++|+.|.+|++||+.++++...+..|...|.++.|.+.  ..+++|+.|+++.+.|.+........-...+.|-.+
T Consensus       256 ~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv  335 (463)
T KOG0270|consen  256 RNVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKV  335 (463)
T ss_pred             ceeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceEEE
Confidence             46789999999999999999999999999999999999986  569999999999999998532222222245679999


Q ss_pred             EECCCC-CEEEEEECCCeEEEEeCCCC-eeeEeeccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEE
Q psy12697        411 KWDPQG-LLLASCSDDMTLKIWSLDKD-NCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKW  488 (602)
Q Consensus       411 ~~~~~~-~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~  488 (602)
                      +|.|.. ..++++..||+|+-+|+++. +++.+++.|..+|.++.+++..+                             
T Consensus       336 ~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p-----------------------------  386 (463)
T KOG0270|consen  336 AWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTP-----------------------------  386 (463)
T ss_pred             EecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCC-----------------------------
Confidence            999954 56778889999999999975 88999999888888888776544                             


Q ss_pred             ccCCCEEEEEeCCCeEEEEeCCCCce--eeeecccCCCeeEeeecCCc--eEEEeeCCCcEEEeecCCCCce
Q psy12697        489 NKRGNYILSAGVDKTTIIWDAASGQC--EQQFSFHSAPALDVDWQSNT--SFASCSTDQHIHVCKLHSDKPV  556 (602)
Q Consensus       489 s~~~~~l~s~~~dg~i~iwd~~~~~~--~~~~~~~~~~v~~~~~s~~~--~l~~~~~d~~i~iw~~~~~~~~  556 (602)
                          .++++++.|+.|++|++..-..  +..-...-+...|+++.|+-  .++.|+..+.++|||+.+..++
T Consensus       387 ----~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V  454 (463)
T KOG0270|consen  387 ----GLLSTASTDKVVKLWKFDVDSPKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPV  454 (463)
T ss_pred             ----cceeeccccceEEEEeecCCCCcccccccccccceeecccCCCcceEEEecCccceEEEeecccChhH
Confidence                5699999999999999875433  22211123346777888887  8899999999999998776554

>KOG1034|consensus

Probab=99.91  E-value=2.8e-22  Score=171.68  Aligned_cols=306  Identities=20%  Similarity=0.382  Sum_probs=226.2

Q ss_pred             CCCceeEEeeCC----CCCeEEEEeCCCeEEEEcCCCc----ceeec--ccccCCeEEEEEccC----CCEEEEEecCCc
Q psy12697        279 SNKDVTSLDWNN----NGSFLATGSYDGYARIWTSDGS----LKSTL--GQHKGPIFALKWNKR----GNYILSAGVDKT  344 (602)
Q Consensus       279 ~~~~i~~~~~~~----~~~~l~~~~~dg~i~i~~~~~~----~~~~~--~~~~~~i~~~~~~~~----~~~l~~~~~dg~  344 (602)
                      +..+|..++|++    +...+++......+.+|...+.    ..+..  ..|......++|+-+    ..++++++.-|.
T Consensus        37 ~~~~I~gv~fN~~~~~~e~~vfatvG~~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~G~~Gv  116 (385)
T KOG1034|consen   37 HNKPIFGVAFNSFLGCDEPQVFATVGGNRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAGGYLGV  116 (385)
T ss_pred             CCCccceeeeehhcCCCCCceEEEeCCcEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEeecceeE
Confidence            457788888885    3333444444566888875532    22222  236777888888754    347888999999


Q ss_pred             EEEEeCCCCceeEEeeeccCCeeeeeccCCC--eEEEeeCCCeEEEEEcCCCceeeEe---ccCCCCeEEEEECCCCCEE
Q psy12697        345 TIIWDAASGQCEQQFSFHSAPALDVDWQSNT--SFASCSTDQHIHVCKLHSDKPVKSF---EGHTNEVNAIKWDPQGLLL  419 (602)
Q Consensus       345 i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~i~i~d~~~~~~~~~~---~~~~~~i~~~~~~~~~~~l  419 (602)
                      |++.|+.++++...+.+|...|..+.+.|..  .+++++.|..|++|++++..++..+   .+|.+.|.++.|+++|.+|
T Consensus       117 IrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i  196 (385)
T KOG1034|consen  117 IRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRI  196 (385)
T ss_pred             EEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcCCCCee
Confidence            9999999999999999999999999999986  8999999999999999999988776   5799999999999999999


Q ss_pred             EEEECCCeEEEEeCCCCeeeEeeccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEe
Q psy12697        420 ASCSDDMTLKIWSLDKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAG  499 (602)
Q Consensus       420 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~  499 (602)
                      ++++.|.+|++|++...+....++.      ++.|+|++.....+.....+....+...|...|-|+.|-  |+++++-+
T Consensus       197 ~ScGmDhslk~W~l~~~~f~~~lE~------s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~--gd~ilSks  268 (385)
T KOG1034|consen  197 ASCGMDHSLKLWRLNVKEFKNKLEL------SITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF--GDFILSKS  268 (385)
T ss_pred             eccCCcceEEEEecChhHHhhhhhh------hcccCCCCccCcCCccccccccccccccccchHHHHHHH--hhheeecc
Confidence            9999999999999986543333221      255666665444444433333444666788999888885  47899988


Q ss_pred             CCCeEEEEeC-CCCce-------------eeeecccCCCeeEeeec--CCc-eEEEeeCCCcEEEeecCCCCceeeeecc
Q psy12697        500 VDKTTIIWDA-ASGQC-------------EQQFSFHSAPALDVDWQ--SNT-SFASCSTDQHIHVCKLHSDKPVKSFEGH  562 (602)
Q Consensus       500 ~dg~i~iwd~-~~~~~-------------~~~~~~~~~~v~~~~~s--~~~-~l~~~~~d~~i~iw~~~~~~~~~~~~~~  562 (602)
                      -++.|..|.. +-++.             +.++......+.-+.|+  |-+ .||.|...|.|++||++..++...-   
T Consensus       269 cenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~t---  345 (385)
T KOG1034|consen  269 CENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCT---  345 (385)
T ss_pred             cCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCc---
Confidence            8999999987 22221             23334344556666554  445 8999999999999999987653110   


Q ss_pred             cccceEEEEecCCcEEEEEECCCCCeEEEeccCCeEE
Q psy12697        563 TTGQLVHSYKGTGGIFEVCWNSRGDKVGASASDGSVF  599 (602)
Q Consensus       563 ~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~v~  599 (602)
                          .+..-.....|...+||.||..|+..++|++|.
T Consensus       346 ----tl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vw  378 (385)
T KOG1034|consen  346 ----TLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVW  378 (385)
T ss_pred             ----eEEeccccceeeeeeecccCcEEEEEeCCCcEE
Confidence                011111246799999999999999999999875

>KOG2919|consensus

Probab=99.91  E-value=7.8e-22  Score=168.56  Aligned_cols=284  Identities=16%  Similarity=0.274  Sum_probs=209.2

Q ss_pred             ceEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEeeC-------CCCCeEE
Q psy12697        224 EVFICAWNPVKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWN-------NNGSFLA  296 (602)
Q Consensus       224 ~v~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-------~~~~~l~  296 (602)
                      -...+.|+|||..|++-+.|..+++|++................   .......+....|...+|-       |+..+++
T Consensus        51 f~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~---~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a  127 (406)
T KOG2919|consen   51 FLKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFS---KHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFA  127 (406)
T ss_pred             hhccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccc---cceeEEeccCCEEEEEEeeeccccCCCccceee
Confidence            34578999999999999999999999986432221100000000   0001112234567777775       5778999


Q ss_pred             EEeCCCeEEEEcC-CCcceeeccc--ccCC---eEEEEEccCCCEEEEEecCCcEEEEeC-CCCceeEEe-------eec
Q psy12697        297 TGSYDGYARIWTS-DGSLKSTLGQ--HKGP---IFALKWNKRGNYILSAGVDKTTIIWDA-ASGQCEQQF-------SFH  362 (602)
Q Consensus       297 ~~~~dg~i~i~~~-~~~~~~~~~~--~~~~---i~~~~~~~~~~~l~~~~~dg~i~~wd~-~~~~~~~~~-------~~~  362 (602)
                      +.+.+.-|++||. .|++...+..  |...   -.+++|+|||.+|++|- ...|+++|+ +.|+....+       .+.
T Consensus       128 ~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGy-krcirvFdt~RpGr~c~vy~t~~~~k~gq  206 (406)
T KOG2919|consen  128 VSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGY-KRCIRVFDTSRPGRDCPVYTTVTKGKFGQ  206 (406)
T ss_pred             eccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecc-cceEEEeeccCCCCCCcchhhhhcccccc
Confidence            9999999999995 4666655542  3333   45899999999998775 668999999 555432222       123


Q ss_pred             cCCeeeeeccCC--CeEEEeeCCCeEEEEEcCCCceeeEeccCCCCeEEEEECCCCCEEEEEEC-CCeEEEEeCCCC-ee
Q psy12697        363 SAPALDVDWQSN--TSFASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSD-DMTLKIWSLDKD-NC  438 (602)
Q Consensus       363 ~~~~~~~~~~~~--~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~-~~  438 (602)
                      .+-+.+++++|.  +.+++++....+-||.-....++..+.+|.+.|+.++|.++|+.|++|+. |..|..||++.. .+
T Consensus       207 ~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~p  286 (406)
T KOG2919|consen  207 KGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDP  286 (406)
T ss_pred             cceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccch
Confidence            456778889886  46899999999999999999999999999999999999999999999986 678999999853 45


Q ss_pred             eEeeccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCCCeEEEEeCCC-Cceeee
Q psy12697        439 VHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAAS-GQCEQQ  517 (602)
Q Consensus       439 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~~~-~~~~~~  517 (602)
                      +..+..|....                               ..-.-....|++++|++|+.||.|++||+.+ +..+..
T Consensus       287 v~~L~rhv~~T-------------------------------NQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv  335 (406)
T KOG2919|consen  287 VYALERHVGDT-------------------------------NQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSV  335 (406)
T ss_pred             hhhhhhhccCc-------------------------------cceEEEecCCCCceeeccCCCccEEEEecCCCCCcccc
Confidence            55555543311                               1111234457899999999999999999998 777888


Q ss_pred             ecccCCCeeEeeecCCc-eEEEeeCC
Q psy12697        518 FSFHSAPALDVDWQSNT-SFASCSTD  542 (602)
Q Consensus       518 ~~~~~~~v~~~~~s~~~-~l~~~~~d  542 (602)
                      +..++..++.++++|-- .+++++..
T Consensus       336 ~~~~sd~vNgvslnP~mpilatssGq  361 (406)
T KOG2919|consen  336 TGNYSDTVNGVSLNPIMPILATSSGQ  361 (406)
T ss_pred             cccccccccceecCcccceeeeccCc
Confidence            88899999999999998 66666554

>KOG0307|consensus

Probab=99.90  E-value=2.6e-23  Score=206.59  Aligned_cols=284  Identities=22%  Similarity=0.437  Sum_probs=214.9

Q ss_pred             EEEEcCCCC-EEEEee----------CCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEeeCCCCCe-
Q psy12697        227 ICAWNPVKD-FLASGS----------GDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSF-  294 (602)
Q Consensus       227 ~~~~~~~~~-~l~s~~----------~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-  294 (602)
                      ..+|+|.+. ++++|.          .+.++.||.+...........           ........+...++|.+.|.. 
T Consensus        11 ~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~-----------~~s~~s~~rF~kL~W~~~g~~~   79 (1049)
T KOG0307|consen   11 TFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKP-----------VGSLQSSNRFNKLAWGSYGSHS   79 (1049)
T ss_pred             eEEecCCCchhhHHHhhhhccccccccccccceeeecccCccccccc-----------cccccccccceeeeecccCCCc
Confidence            468999885 555543          345566665543322210000           011223567899999997766 


Q ss_pred             ---EEEEeCCCeEEEEcCCC-------cceeecccccCCeEEEEEccCCC-EEEEEecCCcEEEEeCCCCceeEEee--e
Q psy12697        295 ---LATGSYDGYARIWTSDG-------SLKSTLGQHKGPIFALKWNKRGN-YILSAGVDKTTIIWDAASGQCEQQFS--F  361 (602)
Q Consensus       295 ---l~~~~~dg~i~i~~~~~-------~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~~wd~~~~~~~~~~~--~  361 (602)
                         ||.|..||.|.+||...       ..+.+...|.+.|..+.|++... .|++|+.||.|.|||+...+......  .
T Consensus        80 ~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~  159 (1049)
T KOG0307|consen   80 HGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQA  159 (1049)
T ss_pred             cceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCC
Confidence               88999999999999542       34566778999999999999765 89999999999999998765544442  2


Q ss_pred             ccCCeeeeeccCC--CeEEEeeCCCeEEEEEcCCCceeeEeccCCC--CeEEEEECCCC-CEEEEEECCC---eEEEEeC
Q psy12697        362 HSAPALDVDWQSN--TSFASCSTDQHIHVCKLHSDKPVKSFEGHTN--EVNAIKWDPQG-LLLASCSDDM---TLKIWSL  433 (602)
Q Consensus       362 ~~~~~~~~~~~~~--~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~--~i~~~~~~~~~-~~l~~~~~dg---~i~iwd~  433 (602)
                      ....|.+++|...  ..|++++.+|.+.|||++..+++..+..+..  .+..++|+|+. ..|+++++|.   .|.+||+
T Consensus       160 ~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDl  239 (1049)
T KOG0307|consen  160 PPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDL  239 (1049)
T ss_pred             CcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecc
Confidence            4567899999876  5588999999999999999999888876665  47789999975 4566666553   5999999


Q ss_pred             CCC-eeeEeeccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCC
Q psy12697        434 DKD-NCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASG  512 (602)
Q Consensus       434 ~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~~~~  512 (602)
                      +.. .+++.++.|...|.++.|.+.                                 |.++|++++.|+.|.+|+.+++
T Consensus       240 R~assP~k~~~~H~~GilslsWc~~---------------------------------D~~lllSsgkD~~ii~wN~~tg  286 (1049)
T KOG0307|consen  240 RFASSPLKILEGHQRGILSLSWCPQ---------------------------------DPRLLLSSGKDNRIICWNPNTG  286 (1049)
T ss_pred             cccCCchhhhcccccceeeeccCCC---------------------------------CchhhhcccCCCCeeEecCCCc
Confidence            853 445555555555554444443                                 4489999999999999999999


Q ss_pred             ceeeeecccCCCeeEeeecCCc--eEEEeeCCCcEEEeecCCCC
Q psy12697        513 QCEQQFSFHSAPALDVDWQSNT--SFASCSTDQHIHVCKLHSDK  554 (602)
Q Consensus       513 ~~~~~~~~~~~~v~~~~~s~~~--~l~~~~~d~~i~iw~~~~~~  554 (602)
                      +.+..+....+.+..+.|+|..  .+++++.||.|.|+.+.+..
T Consensus       287 Evl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~  330 (1049)
T KOG0307|consen  287 EVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD  330 (1049)
T ss_pred             eEeeecCCCCcceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence            9999999888899999999988  88999999999999997654

>KOG4497|consensus

Probab=99.89  E-value=1.5e-21  Score=167.20  Aligned_cols=373  Identities=15%  Similarity=0.219  Sum_probs=250.0

Q ss_pred             EEEECCCCCeEEEeeCCceEEEEecCCceeEEEeeccCceEEEEeCCCCCCCCCCCCccccccccccCCcceEeeCCCcc
Q psy12697        145 SVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKGTGGIFEVCWNSRGTPPNPPESMEVDASIEIPQSKATKLIGHESE  224 (602)
Q Consensus       145 ~~~~s~d~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~  224 (602)
                      -++|||+|+++|+++.- .+.|-|..+-+..+-|.                                         --+.
T Consensus        13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~-----------------------------------------cldk   50 (447)
T KOG4497|consen   13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLHQLFL-----------------------------------------CLDK   50 (447)
T ss_pred             ceeECCCCCeeeeeeee-EEEEeccchhhHHHHHH-----------------------------------------HHHH
Confidence            36899999999999876 78888887765543221                                         1244


Q ss_pred             eEEEEEcCCCCEEEE-eeCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEeeCCCCCeE-EEEeCCC
Q psy12697        225 VFICAWNPVKDFLAS-GSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFL-ATGSYDG  302 (602)
Q Consensus       225 v~~~~~~~~~~~l~s-~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l-~~~~~dg  302 (602)
                      |..+.|..|..+++. ...|+.|.+|++...+--...                ......+.+++|+|||+.+ .+...+-
T Consensus        51 i~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckI----------------deg~agls~~~WSPdgrhiL~tseF~l  114 (447)
T KOG4497|consen   51 IVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKI----------------DEGQAGLSSISWSPDGRHILLTSEFDL  114 (447)
T ss_pred             hhheeeeccceeeeeeeeccceEEEEEeecceeEEEe----------------ccCCCcceeeeECCCcceEeeeeccee
Confidence            666788888766555 566889999999765431111                1125779999999999654 5566788


Q ss_pred             eEEEEcCCCcceeecccccCCeEEEEEccCCCEEEEEecCCc---EEEEeCCCCceeEEeeeccCCeeeeeccCCCeEEE
Q psy12697        303 YARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKT---TIIWDAASGQCEQQFSFHSAPALDVDWQSNTSFAS  379 (602)
Q Consensus       303 ~i~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~---i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  379 (602)
                      .|.+|.+..+....+...+..+..++|+|||++.+.++.-..   +.+.....-..++.+.........+.|+|++..+ 
T Consensus       115 riTVWSL~t~~~~~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~l-  193 (447)
T KOG4497|consen  115 RITVWSLNTQKGYLLPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWL-  193 (447)
T ss_pred             EEEEEEeccceeEEecccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEE-
Confidence            999999987777666666677899999999999887765322   2222222334556666677788899999987643 


Q ss_pred             eeCCCeEEEEEcCCCceeeEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeeeEeec----------------
Q psy12697        380 CSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHDLQ----------------  443 (602)
Q Consensus       380 ~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~----------------  443 (602)
                             .+||.--.-.+..+. ..-.+..++|+|.+++|++|+.|+.+|+.+--+.+....+-                
T Consensus       194 -------aVwd~~Leykv~aYe-~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke  265 (447)
T KOG4497|consen  194 -------AVWDNVLEYKVYAYE-RGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKE  265 (447)
T ss_pred             -------EEecchhhheeeeee-eccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhh
Confidence                   345432211111111 22358889999999999999999999987754443332221                


Q ss_pred             ---cccccEEEEEECCCCCCCCCCCcce-e----------eeee--eccCCccCCeEEEEEccCCCEEEEEeC--CCeEE
Q psy12697        444 ---AHNKEIYTIKWSPTGPETSNPNMSL-I----------FILK--STLGQHKGPIFALKWNKRGNYILSAGV--DKTTI  505 (602)
Q Consensus       444 ---~~~~~i~~~~~~~~~~~~~~~~~~~-~----------~~~~--~~~~~~~~~v~~i~~s~~~~~l~s~~~--dg~i~  505 (602)
                         ...-...++.|.|............ .          ..++  .......-.+.-++||+|..|++|-..  -..+.
T Consensus       266 ~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW  345 (447)
T KOG4497|consen  266 TFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALW  345 (447)
T ss_pred             hcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEE
Confidence               0011223455555433222111110 0          0011  122234556778999999999998654  36799


Q ss_pred             EEeCCCCceeeeecccCCCeeEeeecCCc-eEEEeeCCCcEEEeecCCCCceeeeecccccceEEEEecCCcEEEEEECC
Q psy12697        506 IWDAASGQCEQQFSFHSAPALDVDWQSNT-SFASCSTDQHIHVCKLHSDKPVKSFEGHTTGQLVHSYKGTGGIFEVCWNS  584 (602)
Q Consensus       506 iwd~~~~~~~~~~~~~~~~v~~~~~s~~~-~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp  584 (602)
                      +||+...+....+. ...+|....|.|.. +|+.+.....+++|.......+..-   .         ..-.|.++.|..
T Consensus       346 ~Wdlq~l~l~avLi-Qk~piraf~WdP~~prL~vctg~srLY~W~psg~~~V~vP---~---------~GF~i~~l~W~~  412 (447)
T KOG4497|consen  346 LWDLQNLKLHAVLI-QKHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSGPRVVGVP---K---------KGFNIQKLQWLQ  412 (447)
T ss_pred             EEechhhhhhhhhh-hccceeEEEeCCCCceEEEEcCCceEEEEcCCCceEEecC---C---------CCceeeeEEecC
Confidence            99999877665554 56789999999999 9999998899999987553333221   1         124699999999


Q ss_pred             CCCeEEEeccCCe
Q psy12697        585 RGDKVGASASDGS  597 (602)
Q Consensus       585 dg~~l~~~~~dg~  597 (602)
                      +|..++..+.|..
T Consensus       413 ~g~~i~l~~kDaf  425 (447)
T KOG4497|consen  413 PGEFIVLCGKDAF  425 (447)
T ss_pred             CCcEEEEEcCCce
Confidence            9999999999874

>KOG0321|consensus

Probab=99.89  E-value=1.6e-21  Score=181.51  Aligned_cols=282  Identities=19%  Similarity=0.254  Sum_probs=206.7

Q ss_pred             EeeCC---CCCeEEEEeCCCeEEEEcCCCc-------ceeecccccCCeEEEEEccCCCEEEEEecCCcEEEEeCCCCce
Q psy12697        286 LDWNN---NGSFLATGSYDGYARIWTSDGS-------LKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQC  355 (602)
Q Consensus       286 ~~~~~---~~~~l~~~~~dg~i~i~~~~~~-------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~  355 (602)
                      ..|++   ....|+.+.++|.|.++|....       .......|...|.++.|-|....|++++.|.++++||+.+.++
T Consensus        55 ~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l  134 (720)
T KOG0321|consen   55 DSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRL  134 (720)
T ss_pred             ccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeecccee
Confidence            44544   4567999999999999996532       2345568999999999999777899999999999999999998


Q ss_pred             eEE--eeeccCCeeeeeccCC--CeEEEeeCCCeEEEEEcCCCc---------------------------eeeEeccCC
Q psy12697        356 EQQ--FSFHSAPALDVDWQSN--TSFASCSTDQHIHVCKLHSDK---------------------------PVKSFEGHT  404 (602)
Q Consensus       356 ~~~--~~~~~~~~~~~~~~~~--~~~~~~~~~~~i~i~d~~~~~---------------------------~~~~~~~~~  404 (602)
                      ...  +.+|...+.+++|.+.  ..|++|+.||.|.|||++-..                           .+.....+.
T Consensus       135 ~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s  214 (720)
T KOG0321|consen  135 VGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAAS  214 (720)
T ss_pred             ecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhcccccccccc
Confidence            876  8889999999999987  459999999999999986421                           111223345


Q ss_pred             CCeEE---EEECCCCCEEEEEEC-CCeEEEEeCCCCeeeEeeccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCcc
Q psy12697        405 NEVNA---IKWDPQGLLLASCSD-DMTLKIWSLDKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHK  480 (602)
Q Consensus       405 ~~i~~---~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  480 (602)
                      ..|.+   +.+..|...||+++. |+.|++||++.............    ..+..                   -....
T Consensus       215 ~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~----~~~~t-------------------~skrs  271 (720)
T KOG0321|consen  215 NTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGS----DKYPT-------------------HSKRS  271 (720)
T ss_pred             CceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcc----cCccC-------------------cccce
Confidence            55555   556678889999888 99999999997655443321100    00000                   00123


Q ss_pred             CCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCc--eeeeecccCCC--eeEeeecCCc-eEEEeeCCCcEEEeecCCCC-
Q psy12697        481 GPIFALKWNKRGNYILSAGVDKTTIIWDAASGQ--CEQQFSFHSAP--ALDVDWQSNT-SFASCSTDQHIHVCKLHSDK-  554 (602)
Q Consensus       481 ~~v~~i~~s~~~~~l~s~~~dg~i~iwd~~~~~--~~~~~~~~~~~--v~~~~~s~~~-~l~~~~~d~~i~iw~~~~~~-  554 (602)
                      -.+.++.....|.+|.+.+.|+.|+.||+.+-.  ++..+.++...  -..-..+||+ .+++|+.|...++|.+.+.+ 
T Consensus       272 ~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~  351 (720)
T KOG0321|consen  272 VGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEA  351 (720)
T ss_pred             eeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccC
Confidence            457778888888999988889999999997643  34555544322  2233568999 99999999999999998764 


Q ss_pred             ceeeeecccccceEEEEecCCcEEEEEECCCC-CeEEEeccCCeEEee
Q psy12697        555 PVKSFEGHTTGQLVHSYKGTGGIFEVCWNSRG-DKVGASASDGSVFKN  601 (602)
Q Consensus       555 ~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg-~~l~~~~~dg~v~i~  601 (602)
                      +...+.+|.           -.|++++|.|.. .-++++++|-.++|+
T Consensus       352 ~~~~l~Ght-----------~eVt~V~w~pS~~t~v~TcSdD~~~kiW  388 (720)
T KOG0321|consen  352 PPALLLGHT-----------REVTTVRWLPSATTPVATCSDDFRVKIW  388 (720)
T ss_pred             ChhhhhCcc-----------eEEEEEeeccccCCCceeeccCcceEEE
Confidence            445555554           569999998743 346677999888875

>KOG2919|consensus

Probab=99.89  E-value=4.7e-21  Score=163.83  Aligned_cols=271  Identities=18%  Similarity=0.263  Sum_probs=204.3

Q ss_pred             ceeEEeeCCCCCeEEEEeCCCeEEEEcCCCccee-------------ec-ccccCCeEEEEEc-------cCCCEEEEEe
Q psy12697        282 DVTSLDWNNNGSFLATGSYDGYARIWTSDGSLKS-------------TL-GQHKGPIFALKWN-------KRGNYILSAG  340 (602)
Q Consensus       282 ~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~-------------~~-~~~~~~i~~~~~~-------~~~~~l~~~~  340 (602)
                      -...+.|+|||..|++-+.|..+.+|++......             .+ ......|...+|-       |+.+++++.+
T Consensus        51 f~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ss  130 (406)
T KOG2919|consen   51 FLKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSS  130 (406)
T ss_pred             hhccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeecc
Confidence            3567889999999999999999999986421110             11 1123456677774       6778999999


Q ss_pred             cCCcEEEEeCCCCceeEEeeecc-----CCeeeeeccCCCeEEEeeCCCeEEEEEc-CCCce--eeEe-----ccCCCCe
Q psy12697        341 VDKTTIIWDAASGQCEQQFSFHS-----APALDVDWQSNTSFASCSTDQHIHVCKL-HSDKP--VKSF-----EGHTNEV  407 (602)
Q Consensus       341 ~dg~i~~wd~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~i~i~d~-~~~~~--~~~~-----~~~~~~i  407 (602)
                      .+.-|.+||.-+|+....+....     ....++.|+|++..+.++.+..|+++|+ +.+..  +...     .+..+-|
T Consensus       131 r~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGykrcirvFdt~RpGr~c~vy~t~~~~k~gq~gii  210 (406)
T KOG2919|consen  131 RDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGYKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGII  210 (406)
T ss_pred             ccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecccceEEEeeccCCCCCCcchhhhhccccccccee
Confidence            99999999999999887776532     2456889999999999999999999999 44432  2222     2335679


Q ss_pred             EEEEECC-CCCEEEEEECCCeEEEEeCCCCeeeEeeccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEE
Q psy12697        408 NAIKWDP-QGLLLASCSDDMTLKIWSLDKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFAL  486 (602)
Q Consensus       408 ~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i  486 (602)
                      .+++|+| +.+.++.|+...++-||.-..+.++..+-+                                  |.+.|+.+
T Consensus       211 sc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llgg----------------------------------h~gGvThL  256 (406)
T KOG2919|consen  211 SCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGG----------------------------------HGGGVTHL  256 (406)
T ss_pred             eeeeccCCCCcceeeecccceeeeEecCCCCceeeecc----------------------------------cCCCeeeE
Confidence            9999999 556999999999999998887777766554                                  56666677


Q ss_pred             EEccCCCEEEEEeC-CCeEEEEeCCC-CceeeeecccCC-CeeE--eeecCCc-eEEEeeCCCcEEEeecCC-CCceeee
Q psy12697        487 KWNKRGNYILSAGV-DKTTIIWDAAS-GQCEQQFSFHSA-PALD--VDWQSNT-SFASCSTDQHIHVCKLHS-DKPVKSF  559 (602)
Q Consensus       487 ~~s~~~~~l~s~~~-dg~i~iwd~~~-~~~~~~~~~~~~-~v~~--~~~s~~~-~l~~~~~d~~i~iw~~~~-~~~~~~~  559 (602)
                      .|.++|+.|.+|.. |-.|..||++. +.++..+..|.. .=..  ....|++ .|++|+.||.|++||+++ +.++..+
T Consensus       257 ~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~  336 (406)
T KOG2919|consen  257 QWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVT  336 (406)
T ss_pred             EeccCcCeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCccccc
Confidence            77778888888875 77899999975 455666766655 2233  4457888 999999999999999987 5555554


Q ss_pred             ecccccceEEEEecCCcEEEEEECCCCCeEEEeccCCe
Q psy12697        560 EGHTTGQLVHSYKGTGGIFEVCWNSRGDKVGASASDGS  597 (602)
Q Consensus       560 ~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~  597 (602)
                      ..+.           ..+..++++|--.++|+++....
T Consensus       337 ~~~s-----------d~vNgvslnP~mpilatssGqr~  363 (406)
T KOG2919|consen  337 GNYS-----------DTVNGVSLNPIMPILATSSGQRI  363 (406)
T ss_pred             cccc-----------ccccceecCcccceeeeccCcee
Confidence            4443           56888999999888888876543

>KOG0302|consensus

Probab=99.89  E-value=2.4e-21  Score=169.05  Aligned_cols=239  Identities=27%  Similarity=0.485  Sum_probs=179.8

Q ss_pred             cCCCCceeEEeeCCC--CCeEEEEeCCCeEEEEcCC-----------------CcceeecccccCCeEEEEEccCC-CEE
Q psy12697        277 VPSNKDVTSLDWNNN--GSFLATGSYDGYARIWTSD-----------------GSLKSTLGQHKGPIFALKWNKRG-NYI  336 (602)
Q Consensus       277 ~~~~~~i~~~~~~~~--~~~l~~~~~dg~i~i~~~~-----------------~~~~~~~~~~~~~i~~~~~~~~~-~~l  336 (602)
                      .+|.+.++.+.-++-  ..+.++-+..|.|.||++.                 ...+.++.+|...=..++|||-. -.|
T Consensus       148 i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~L  227 (440)
T KOG0302|consen  148 IPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRL  227 (440)
T ss_pred             cccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeeccccccccc
Confidence            345566666665554  3455666778999999854                 13456677899889999999932 248


Q ss_pred             EEEecCCcEEEEeCCCCceeE---EeeeccCCeeeeeccCC--CeEEEeeCCCeEEEEEcCCCc--eeeEeccCCCCeEE
Q psy12697        337 LSAGVDKTTIIWDAASGQCEQ---QFSFHSAPALDVDWQSN--TSFASCSTDQHIHVCKLHSDK--PVKSFEGHTNEVNA  409 (602)
Q Consensus       337 ~~~~~dg~i~~wd~~~~~~~~---~~~~~~~~~~~~~~~~~--~~~~~~~~~~~i~i~d~~~~~--~~~~~~~~~~~i~~  409 (602)
                      ++|..-+.|++|...++....   .+..|...|-.+.|+|.  +.|++|+.||+|+|||++.+.  .....+.|.+.|+.
T Consensus       228 lsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNV  307 (440)
T KOG0302|consen  228 LSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNV  307 (440)
T ss_pred             ccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCceee
Confidence            888888899999998876543   45568999999999986  779999999999999999872  33444889999999


Q ss_pred             EEECCCCCEEEEEECCCeEEEEeCCC---CeeeEeeccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEE
Q psy12697        410 IKWDPQGLLLASCSDDMTLKIWSLDK---DNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFAL  486 (602)
Q Consensus       410 ~~~~~~~~~l~~~~~dg~i~iwd~~~---~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i  486 (602)
                      |.|+.+-.+||+|++||+++|||++.   ++++..++.|..+|+++.|+|.                             
T Consensus       308 ISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~-----------------------------  358 (440)
T KOG0302|consen  308 ISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPH-----------------------------  358 (440)
T ss_pred             EEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccc-----------------------------
Confidence            99999888999999999999999985   3556667666666666666654                             


Q ss_pred             EEccCCCEEEEEeCCCeEEEEeCCCCce----------------eeeecccC--CCeeEeeecCCc--eEEEeeCCCcEE
Q psy12697        487 KWNKRGNYILSAGVDKTTIIWDAASGQC----------------EQQFSFHS--APALDVDWQSNT--SFASCSTDQHIH  546 (602)
Q Consensus       487 ~~s~~~~~l~s~~~dg~i~iwd~~~~~~----------------~~~~~~~~--~~v~~~~~s~~~--~l~~~~~d~~i~  546 (602)
                          +...|++++.|..|.+||+..-.-                .+.+-.|.  ..+..+.|++.-  ++++.+.|| +.
T Consensus       359 ----e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dG-fn  433 (440)
T KOG0302|consen  359 ----EDSVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDG-FN  433 (440)
T ss_pred             ----cCceEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccc-ee
Confidence                345688899999999999853211                11122243  358889999876  888888887 45


Q ss_pred             Eee
Q psy12697        547 VCK  549 (602)
Q Consensus       547 iw~  549 (602)
                      ||.
T Consensus       434 Vfk  436 (440)
T KOG0302|consen  434 VFK  436 (440)
T ss_pred             EEE
Confidence            553

>KOG1034|consensus

Probab=99.89  E-value=8.5e-23  Score=174.79  Aligned_cols=274  Identities=19%  Similarity=0.343  Sum_probs=192.1

Q ss_pred             CcccCCcceeccceeeeecccceeeeeeeccCCceEEEEECCC-CCeEEEeeCCceEEEEecCCceeEEEeeccCceEEE
Q psy12697        109 PAITNGEEVHRLTLPLWDVERGECLNTLTRHTEPVYSVAFSPD-GKFLASGSFDKCVHIWSARTGQLVHSYKGTGGIFEV  187 (602)
Q Consensus       109 ~~~~~~~~~~~~~i~vwd~~~~~~~~~l~~h~~~V~~~~~s~d-~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~  187 (602)
                      |+++.+.  ..+.|+|.|+.++++...+.+|.+.|+.+.|.|+ .++|+++|.|.+|++||+++..++..|.+       
T Consensus       106 p~la~~G--~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG-------  176 (385)
T KOG1034|consen  106 PFLAAGG--YLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGG-------  176 (385)
T ss_pred             eeEEeec--ceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecc-------
Confidence            4444433  6789999999999999999999999999999995 47999999999999999999999987753       


Q ss_pred             EeCCCCCCCCCCCCccccccccccCCcceEeeCCCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCccceEEEE
Q psy12697        188 CWNSRGTPPNPPESMEVDASIEIPQSKATKLIGHESEVFICAWNPVKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLR  267 (602)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~  267 (602)
                                                    +.||.+.|.++.|++++.++++++.|..+++|++...+.....+      
T Consensus       177 ------------------------------~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE------  220 (385)
T KOG1034|consen  177 ------------------------------VEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLE------  220 (385)
T ss_pred             ------------------------------cccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhh------
Confidence                                          46899999999999999999999999999999998654332111      


Q ss_pred             EEecCCCcccCCCCceeEEeeCCCCCeEEEEeCCCeEEEEcCCCcceeecccccCCeEEEEEccCCCEEEEEecCCcEEE
Q psy12697        268 HCISKGGTEVPSNKDVTSLDWNNNGSFLATGSYDGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTII  347 (602)
Q Consensus       268 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~  347 (602)
                                      .+..|+|++...-.-  .....+.+.     .+..-|...|.|+.|-  |+++++-+-++.|..
T Consensus       221 ----------------~s~~~~~~~t~~pfp--t~~~~fp~f-----st~diHrnyVDCvrw~--gd~ilSkscenaI~~  275 (385)
T KOG1034|consen  221 ----------------LSITYSPNKTTRPFP--TPKTHFPDF-----STTDIHRNYVDCVRWF--GDFILSKSCENAIVC  275 (385)
T ss_pred             ----------------hhcccCCCCccCcCC--ccccccccc-----cccccccchHHHHHHH--hhheeecccCceEEE
Confidence                            123455544321100  001111111     1334588899999997  579999999999999


Q ss_pred             EeCC-CCceeEEeeeccCCeeeeeccCCCeEEEeeCCCeEEEEEcCCCceeeEeccCCCCeE--EEEECCCCCEEEEEEC
Q psy12697        348 WDAA-SGQCEQQFSFHSAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEGHTNEVN--AIKWDPQGLLLASCSD  424 (602)
Q Consensus       348 wd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~--~~~~~~~~~~l~~~~~  424 (602)
                      |... -++............                            ..+..+.-....|.  ..+|+|-++.||.|..
T Consensus       276 w~pgkl~e~~~~vkp~es~~----------------------------Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq  327 (385)
T KOG1034|consen  276 WKPGKLEESIHNVKPPESAT----------------------------TILGEFDYPMCDIWFIRFAFDPWQKMLALGNQ  327 (385)
T ss_pred             EecchhhhhhhccCCCccce----------------------------eeeeEeccCccceEEEEEeecHHHHHHhhccC
Confidence            9762 222111111000000                            01122222333333  3467788899999999


Q ss_pred             CCeEEEEeCCCCeeeEeeccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCCCeE
Q psy12697        425 DMTLKIWSLDKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTT  504 (602)
Q Consensus       425 dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i  504 (602)
                      .|.|.+||++..++...-.        +.                      -......|...+||.||..|+....|++|
T Consensus       328 ~g~v~vwdL~~~ep~~~tt--------l~----------------------~s~~~~tVRQ~sfS~dgs~lv~vcdd~~V  377 (385)
T KOG1034|consen  328 SGKVYVWDLDNNEPPKCTT--------LT----------------------HSKSGSTVRQTSFSRDGSILVLVCDDGTV  377 (385)
T ss_pred             CCcEEEEECCCCCCccCce--------EE----------------------eccccceeeeeeecccCcEEEEEeCCCcE
Confidence            9999999998765431100        00                      00134567888999999999999999999


Q ss_pred             EEEeCC
Q psy12697        505 IIWDAA  510 (602)
Q Consensus       505 ~iwd~~  510 (602)
                      .-||..
T Consensus       378 wrwdrv  383 (385)
T KOG1034|consen  378 WRWDRV  383 (385)
T ss_pred             EEEEee
Confidence            999853

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.88  E-value=2.1e-18  Score=173.63  Aligned_cols=342  Identities=30%  Similarity=0.545  Sum_probs=261.5

Q ss_pred             eccceeeeecccce-eeeeeeccCC-ceEEEEE-CCCCC-eEEEeeC-CceEEEEecCC-ceeEEEeeccCceEEEEeCC
Q psy12697        118 HRLTLPLWDVERGE-CLNTLTRHTE-PVYSVAF-SPDGK-FLASGSF-DKCVHIWSART-GQLVHSYKGTGGIFEVCWNS  191 (602)
Q Consensus       118 ~~~~i~vwd~~~~~-~~~~l~~h~~-~V~~~~~-s~d~~-~l~s~~~-d~~v~iwd~~~-~~~~~~~~~~~~~~~~~~~~  191 (602)
                      .+..+.+|+...+. .+..+.++.. .+..+.+ ++++. +++..+. |+.+.+|+... ....                
T Consensus        85 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~----------------  148 (466)
T COG2319          85 SDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLI----------------  148 (466)
T ss_pred             CCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEEEecCCCeEE----------------
Confidence            46789999999887 7888887554 8888888 88888 5555444 99999999987 4443                


Q ss_pred             CCCCCCCCCCccccccccccCCcceEeeCCCcceEEEEEcCCCCEEEEeeC-CCcEEEEeCCCCCCCCCccceEEEEEEe
Q psy12697        192 RGTPPNPPESMEVDASIEIPQSKATKLIGHESEVFICAWNPVKDFLASGSG-DSTARIWDMTDSTKKDPKELQIVLRHCI  270 (602)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~  270 (602)
                                              ..+..|...|..++|+|++..+++++. |+.+++|++........           
T Consensus       149 ------------------------~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------  193 (466)
T COG2319         149 ------------------------RTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLST-----------  193 (466)
T ss_pred             ------------------------EEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEe-----------
Confidence                                    445679999999999999998988886 99999999987332111           


Q ss_pred             cCCCcccCCCCceeEEeeCCCCC-eEEEEeCCCeEEEEcCC-Cccee-ecccccCCeEEEEEccCCCEEEEEecCCcEEE
Q psy12697        271 SKGGTEVPSNKDVTSLDWNNNGS-FLATGSYDGYARIWTSD-GSLKS-TLGQHKGPIFALKWNKRGNYILSAGVDKTTII  347 (602)
Q Consensus       271 ~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~i~~~~-~~~~~-~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~  347 (602)
                           ...|...+.+++|+|++. .+++++.|+.+.+||.. +.... .+..|.... ...|+|++..+++++.|+.+++
T Consensus       194 -----~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~  267 (466)
T COG2319         194 -----LAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRL  267 (466)
T ss_pred             -----eccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEE
Confidence                 111568899999999998 55555999999999876 44444 577787775 4489999988999999999999


Q ss_pred             EeCCCCce-eEEeeeccCCeeeeeccC-CCeEEEeeCCCeEEEEEcCCCceeeEec--cCCCCeEEEEECCCCCEEEEE-
Q psy12697        348 WDAASGQC-EQQFSFHSAPALDVDWQS-NTSFASCSTDQHIHVCKLHSDKPVKSFE--GHTNEVNAIKWDPQGLLLASC-  422 (602)
Q Consensus       348 wd~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~i~d~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~-  422 (602)
                      |+...... ...+..|...+.++.|.| ...+++++.++.+.+|+...........  .|...+..+.+.+++..++.+ 
T Consensus       268 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  347 (466)
T COG2319         268 WDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGG  347 (466)
T ss_pred             eeecCCCcEEEEEecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEee
Confidence            99987765 444456778899999998 4667778888889999998887666665  788889999994343556555 


Q ss_pred             ECCCeEEEEeCCCCeeeEeeccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEE-EeCC
Q psy12697        423 SDDMTLKIWSLDKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILS-AGVD  501 (602)
Q Consensus       423 ~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s-~~~d  501 (602)
                      ..|+.+.+|++............                                   ..+..+.+++ ...+.. +..+
T Consensus       348 ~~d~~~~~~~~~~~~~~~~~~~~-----------------------------------~~~~~~~~~~-~~~~~~~~~~~  391 (466)
T COG2319         348 SDDGTIRLWDLRTGKPLKTLEGH-----------------------------------SNVLSVSFSP-DGRVVSSGSTD  391 (466)
T ss_pred             cCCCcEEeeecCCCceeEEecCC-----------------------------------ceEEEEEECC-CCCEEEEecCC
Confidence            67889999998876522221111                                   1145566666 333444 7889


Q ss_pred             CeEEEEeCCCCceeeeecccCCCeeEeeecCCc-eEEEeeCCCcEEEeecCC
Q psy12697        502 KTTIIWDAASGQCEQQFSFHSAPALDVDWQSNT-SFASCSTDQHIHVCKLHS  552 (602)
Q Consensus       502 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~-~l~~~~~d~~i~iw~~~~  552 (602)
                      +.+.+|+............+...+....+++++ .+++++.++.+++|+..+
T Consensus       392 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  443 (466)
T COG2319         392 GTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLKT  443 (466)
T ss_pred             CceEEEecccCeeeeeccCCCCcEEEEEECCCCcEEEEecCCCcEEEEeccC
Confidence            999999999888877776544788999999999 888899999999999765

>KOG0270|consensus

Probab=99.88  E-value=8.5e-21  Score=169.25  Aligned_cols=274  Identities=18%  Similarity=0.287  Sum_probs=193.5

Q ss_pred             eEEeeCCCCCeEEEEeCCC-----eEEEEcCCCcceeeccccc----CCeEEEEEcc-------CCCEEEEEecCCcEEE
Q psy12697        284 TSLDWNNNGSFLATGSYDG-----YARIWTSDGSLKSTLGQHK----GPIFALKWNK-------RGNYILSAGVDKTTII  347 (602)
Q Consensus       284 ~~~~~~~~~~~l~~~~~dg-----~i~i~~~~~~~~~~~~~~~----~~i~~~~~~~-------~~~~l~~~~~dg~i~~  347 (602)
                      -.+..-|..++++++-.+.     .+++|+.....  .+..|.    ....|+.|..       .|++++.|+.|..|.|
T Consensus       129 de~~V~psDnlIl~ar~eddvs~LEvYVyn~~e~n--lYvHHD~ilpafPLC~ewld~~~~~~~~gNyvAiGtmdp~IeI  206 (463)
T KOG0270|consen  129 DEEQVKPSDNLILCARNEDDVSYLEVYVYNEEEEN--LYVHHDFILPAFPLCIEWLDHGSKSGGAGNYVAIGTMDPEIEI  206 (463)
T ss_pred             ccceeccCCcEEEEeeccCCceEEEEEEEcCCCcc--eeEecceeccCcchhhhhhhcCCCCCCCcceEEEeccCceeEE
Confidence            3445567666777665443     35555543221  121222    2334666643       3689999999999999


Q ss_pred             EeCCCCcee---------------------EEeeeccCCeeeeeccCC--CeEEEeeCCCeEEEEEcCCCceeeEeccCC
Q psy12697        348 WDAASGQCE---------------------QQFSFHSAPALDVDWQSN--TSFASCSTDQHIHVCKLHSDKPVKSFEGHT  404 (602)
Q Consensus       348 wd~~~~~~~---------------------~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~  404 (602)
                      ||+.-...+                     ....+|...+..+.|...  +.+++|+.|.+|.+||+.++++..++..|.
T Consensus       207 WDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~  286 (463)
T KOG0270|consen  207 WDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSITHHG  286 (463)
T ss_pred             eccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCcceehhhcC
Confidence            997521100                     012246667778888775  669999999999999999999999999999


Q ss_pred             CCeEEEEECC-CCCEEEEEECCCeEEEEeCCCCeeeEeeccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCe
Q psy12697        405 NEVNAIKWDP-QGLLLASCSDDMTLKIWSLDKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPI  483 (602)
Q Consensus       405 ~~i~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  483 (602)
                      ..|.++.|+| ...+|++|+.|++|.+.|.+........-...+.|..++|.|..                         
T Consensus       287 k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~s-------------------------  341 (463)
T KOG0270|consen  287 KKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHS-------------------------  341 (463)
T ss_pred             CceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceEEEEecCCC-------------------------
Confidence            9999999999 56789999999999999998532222211223445555555432                         


Q ss_pred             EEEEEccCCCEEEEEeCCCeEEEEeCCCC-ceeeeecccCCCeeEeeecCCc--eEEEeeCCCcEEEeecCCCCceeeee
Q psy12697        484 FALKWNKRGNYILSAGVDKTTIIWDAASG-QCEQQFSFHSAPALDVDWQSNT--SFASCSTDQHIHVCKLHSDKPVKSFE  560 (602)
Q Consensus       484 ~~i~~s~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~~~~s~~~--~l~~~~~d~~i~iw~~~~~~~~~~~~  560 (602)
                              ...++++..||+|+-+|++.. +++.++..|.++|.++++++..  .+++++.|+.|++|++....+...-.
T Consensus       342 --------e~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~  413 (463)
T KOG0270|consen  342 --------ENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKE  413 (463)
T ss_pred             --------ceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCccccc
Confidence                    246778889999999999875 8999999999999999998876  89999999999999987654322111


Q ss_pred             cccccceEEEEecCCcEEEEEECCCCC-eEEEeccCCeEEee
Q psy12697        561 GHTTGQLVHSYKGTGGIFEVCWNSRGD-KVGASASDGSVFKN  601 (602)
Q Consensus       561 ~~~~~~~~~~~~~~~~i~~l~~spdg~-~l~~~~~dg~v~i~  601 (602)
                       +       .++ -+...|+++.|+-. .||+|+..+.++|+
T Consensus       414 -~-------~~~-~~rl~c~~~~~~~a~~la~GG~k~~~~vw  446 (463)
T KOG0270|consen  414 -H-------SFK-LGRLHCFALDPDVAFTLAFGGEKAVLRVW  446 (463)
T ss_pred             -c-------ccc-ccceeecccCCCcceEEEecCccceEEEe
Confidence             1       111 13467788888875 56777777766653

>KOG1009|consensus

Probab=99.88  E-value=1.4e-20  Score=166.00  Aligned_cols=299  Identities=18%  Similarity=0.296  Sum_probs=211.5

Q ss_pred             CCceeEEeeCCCCC-eEEEEeCCCeEEEEcCC-----C-----cceeecccccCCeEEEEEccCCCEEEEEecCCcEEEE
Q psy12697        280 NKDVTSLDWNNNGS-FLATGSYDGYARIWTSD-----G-----SLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIW  348 (602)
Q Consensus       280 ~~~i~~~~~~~~~~-~l~~~~~dg~i~i~~~~-----~-----~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~w  348 (602)
                      ..++.++.|.++.. .+++|+.|..|++|.+.     +     +....+..|...|+++.|+|+|+.|++|+.+|.+.+|
T Consensus        13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lW   92 (434)
T KOG1009|consen   13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLW   92 (434)
T ss_pred             CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEE
Confidence            47799999999776 99999999999999754     1     1344677899999999999999999999999999999


Q ss_pred             eCC--------C--------CceeEEeeeccCCeeeeeccCCCe-EEEeeCCCeEEEEEcCCCceeeEeccCCCCeEEEE
Q psy12697        349 DAA--------S--------GQCEQQFSFHSAPALDVDWQSNTS-FASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIK  411 (602)
Q Consensus       349 d~~--------~--------~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~  411 (602)
                      -..        +        ....+...+|...+..++|++++. +++++-|+.+++||+..++....+..|...+..++
T Consensus        93 k~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgva  172 (434)
T KOG1009|consen   93 KQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVA  172 (434)
T ss_pred             EecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeeccccccccceee
Confidence            655        2        123345567889999999999865 67888999999999999999999999999999999


Q ss_pred             ECCCCCEEEEEECCCeEEEEeCCCCeeeEeeccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccC
Q psy12697        412 WDPQGLLLASCSDDMTLKIWSLDKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKR  491 (602)
Q Consensus       412 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~  491 (602)
                      |+|-++++++-+.|...+.+.+.....+.....  ..+..-++.+...        .... ...-..-..-...++|+||
T Consensus       173 wDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~--~~m~~~~~~~~e~--------~s~r-LfhDeTlksFFrRlsfTPd  241 (434)
T KOG1009|consen  173 WDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGL--DIMPAKAFNEREG--------KSTR-LFHDETLKSFFRRLSFTPD  241 (434)
T ss_pred             cchhhhhhhhhccCcccceeeeeeeeeeeeeee--eEeeecccCCCCc--------ceee-eeecCchhhhhhhcccCCC
Confidence            999999999999998888887765444333221  0000011111000        0000 0000012334567889999


Q ss_pred             CCEEEEEeC----CC-----eEEEEeCCC-CceeeeecccCCCeeEeeecC------------------CceEEEeeCCC
Q psy12697        492 GNYILSAGV----DK-----TTIIWDAAS-GQCEQQFSFHSAPALDVDWQS------------------NTSFASCSTDQ  543 (602)
Q Consensus       492 ~~~l~s~~~----dg-----~i~iwd~~~-~~~~~~~~~~~~~v~~~~~s~------------------~~~l~~~~~d~  543 (602)
                      |.+|++...    ++     ..++++-.. .++...+.....++..+.|+|                  -+.++.....+
T Consensus       242 G~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt~~  321 (434)
T KOG1009|consen  242 GSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIATKN  321 (434)
T ss_pred             CcEEEcccceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEeecc
Confidence            999987532    22     234554322 233445555455555555543                  23334445567


Q ss_pred             cEEEeecCCCCceeeeecccccceEEEEecCCcEEEEEECCCCCeEEEeccCCeEE
Q psy12697        544 HIHVCKLHSDKPVKSFEGHTTGQLVHSYKGTGGIFEVCWNSRGDKVGASASDGSVF  599 (602)
Q Consensus       544 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~v~  599 (602)
                      .|+|||.++..|+.....-.          -..|++++|++||..|+..+.||...
T Consensus       322 svyvydtq~~~P~~~v~nih----------y~~iTDiaws~dg~~l~vSS~DGyCS  367 (434)
T KOG1009|consen  322 SVYVYDTQTLEPLAVVDNIH----------YSAITDIAWSDDGSVLLVSSTDGFCS  367 (434)
T ss_pred             eEEEeccccccceEEEeeee----------eeeecceeecCCCcEEEEeccCCceE
Confidence            89999988888776655421          25699999999999999999999654

>KOG1538|consensus

Probab=99.88  E-value=7.2e-21  Score=177.96  Aligned_cols=271  Identities=18%  Similarity=0.300  Sum_probs=209.4

Q ss_pred             ceEEEEECCCCCeEEEeeCCceEEEEecCCceeEEEeeccCceEEEEeCCCCCCCCCCCCccccccccccCCcceEeeCC
Q psy12697        142 PVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKGTGGIFEVCWNSRGTPPNPPESMEVDASIEIPQSKATKLIGH  221 (602)
Q Consensus       142 ~V~~~~~s~d~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h  221 (602)
                      .|..++|-|||..|+.+. +..+.+||...|.++                                        .++.+|
T Consensus        14 ci~d~afkPDGsqL~lAA-g~rlliyD~ndG~ll----------------------------------------qtLKgH   52 (1081)
T KOG1538|consen   14 CINDIAFKPDGTQLILAA-GSRLLVYDTSDGTLL----------------------------------------QPLKGH   52 (1081)
T ss_pred             chheeEECCCCceEEEec-CCEEEEEeCCCcccc----------------------------------------cccccc
Confidence            789999999999887764 467899999999887                                        556789


Q ss_pred             CcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEeeCCCCCeEEEEeCC
Q psy12697        222 ESEVFICAWNPVKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFLATGSYD  301 (602)
Q Consensus       222 ~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d  301 (602)
                      .+.|++++|+.||+.+++|+.|..|.+|+-.-...                  ....|...|.|+.|+|-...+++++-+
T Consensus        53 KDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~------------------LkYSH~D~IQCMsFNP~~h~LasCsLs  114 (1081)
T KOG1538|consen   53 KDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGI------------------LKYSHNDAIQCMSFNPITHQLASCSLS  114 (1081)
T ss_pred             cceEEEEEEccCCceeccCCCceeEEEecccccce------------------eeeccCCeeeEeecCchHHHhhhcchh
Confidence            99999999999999999999999999998643321                  123468899999999998888887654


Q ss_pred             CeEEEEcCCCcceeecccccCCeEEEEEccCCCEEEEEecCCcEEEEeCCCCceeEEee---eccCCeeeeeccCC----
Q psy12697        302 GYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFS---FHSAPALDVDWQSN----  374 (602)
Q Consensus       302 g~i~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~---~~~~~~~~~~~~~~----  374 (602)
                       ..-+|..+.+.+.... ....+.+++|..||++++.|-.+|+|.+-+- +++....+.   +...++.+++|+|+    
T Consensus       115 -dFglWS~~qK~V~K~k-ss~R~~~CsWtnDGqylalG~~nGTIsiRNk-~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G  191 (1081)
T KOG1538|consen  115 -DFGLWSPEQKSVSKHK-SSSRIICCSWTNDGQYLALGMFNGTISIRNK-NGEEKVKIERPGGSNSPIWSICWNPSSGEG  191 (1081)
T ss_pred             -hccccChhhhhHHhhh-hheeEEEeeecCCCcEEEEeccCceEEeecC-CCCcceEEeCCCCCCCCceEEEecCCCCCC
Confidence             3667886654433322 3456889999999999999999999999864 444444443   36778999999986    


Q ss_pred             --CeEEEeeCCCeEEEEEcCCCceeeEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeeeEeeccccccEEEE
Q psy12697        375 --TSFASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHDLQAHNKEIYTI  452 (602)
Q Consensus       375 --~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~  452 (602)
                        ..+++...+.++.++.+.. +.+.+-+.-.-...|+.+.|+|.++..|+.|+.+++|. +.|-.+.++-         
T Consensus       192 ~~di~aV~DW~qTLSFy~LsG-~~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fT-R~GvrLGTvg---------  260 (1081)
T KOG1538|consen  192 RNDILAVADWGQTLSFYQLSG-KQIGKDRALNFDPCCISYFTNGEYILLGGSDKQLSLFT-RDGVRLGTVG---------  260 (1081)
T ss_pred             ccceEEEEeccceeEEEEecc-eeecccccCCCCchhheeccCCcEEEEccCCCceEEEe-ecCeEEeecc---------
Confidence              3477777788888877753 33332233344567899999999999999999999996 3444444332         


Q ss_pred             EECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCCCeEEEEeCC
Q psy12697        453 KWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAA  510 (602)
Q Consensus       453 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~~  510 (602)
                                               ....+|..++..|++++++.|+.||+|..|++.
T Consensus       261 -------------------------~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~  293 (1081)
T KOG1538|consen  261 -------------------------EQDSWIWTVQAKPNSQYVVVGCQDGTIACYNLI  293 (1081)
T ss_pred             -------------------------ccceeEEEEEEccCCceEEEEEccCeeehhhhH
Confidence                                     245677778888899999999999999999864

>KOG0322|consensus

Probab=99.88  E-value=1.9e-21  Score=161.50  Aligned_cols=288  Identities=18%  Similarity=0.184  Sum_probs=185.8

Q ss_pred             eeeeeeccCCceEEEEECCCCCeEEEeeCCceEEEEecCCceeEEEeeccCceEEEEeCCCCCCCCCCCCcccccccccc
Q psy12697        132 CLNTLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKGTGGIFEVCWNSRGTPPNPPESMEVDASIEIP  211 (602)
Q Consensus       132 ~~~~l~~h~~~V~~~~~s~d~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (602)
                      +...|++|.+.|+++.|..+++ |.+|..-|.|++|++++.+.+..++.                               
T Consensus         6 P~fvLRp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~~~~r~-------------------------------   53 (323)
T KOG0322|consen    6 PFFVLRPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDLPLIRL-------------------------------   53 (323)
T ss_pred             CeeEeccccchheehhhccchh-hhcccccceEEEEEeecCccchhhhh-------------------------------
Confidence            4566789999999999998877 88999999999999998776543331                               


Q ss_pred             CCcceEeeCCCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEeeCCC
Q psy12697        212 QSKATKLIGHESEVFICAWNPVKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNN  291 (602)
Q Consensus       212 ~~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  291 (602)
                              .|...|+.+.-.|+ ..|.+-+.|+.+.+|++..+......                   .-.++++.|.+.
T Consensus        54 --------~g~~~it~lq~~p~-d~l~tqgRd~~L~lw~ia~s~~i~i~-------------------Si~~nslgFCrf  105 (323)
T KOG0322|consen   54 --------FGRLFITNLQSIPN-DSLDTQGRDPLLILWTIAYSAFISIH-------------------SIVVNSLGFCRF  105 (323)
T ss_pred             --------hccceeeceeecCC-cchhhcCCCceEEEEEccCcceEEEe-------------------eeeccccccccc
Confidence                    36677888888886 56888899999999999764432111                   011233333321


Q ss_pred             CCeEEEEeCCC-eEEEEcCCCcce-----------eec-----ccccCCeEEEEEcc-CCCEEEEEecCCcEEEEeCCCC
Q psy12697        292 GSFLATGSYDG-YARIWTSDGSLK-----------STL-----GQHKGPIFALKWNK-RGNYILSAGVDKTTIIWDAASG  353 (602)
Q Consensus       292 ~~~l~~~~~dg-~i~i~~~~~~~~-----------~~~-----~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~~wd~~~~  353 (602)
                      .  +...+... ....++-++...           ...     ....+.+.+..+.. ++.+                  
T Consensus       106 S--l~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~------------------  165 (323)
T KOG0322|consen  106 S--LVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGST------------------  165 (323)
T ss_pred             e--eccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeeccccccce------------------
Confidence            0  11111100 111111111000           000     01112233332211 1111                  


Q ss_pred             ceeEEeeeccCCeeeeeccCCCeEEEeeCCCeEEEEEcCCC----------ceeeEeccCCCCeEEEEECCCCCEEEEEE
Q psy12697        354 QCEQQFSFHSAPALDVDWQSNTSFASCSTDQHIHVCKLHSD----------KPVKSFEGHTNEVNAIKWDPQGLLLASCS  423 (602)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~----------~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  423 (602)
                                           -.+++|.++|.+.+||+.++          +.......|..+|.++.+.+.-..=++|+
T Consensus       166 ---------------------~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgg  224 (323)
T KOG0322|consen  166 ---------------------FLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGG  224 (323)
T ss_pred             ---------------------EEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCC
Confidence                                 11344444555555555444          22334456889999999998777778888


Q ss_pred             CCCeEEEEeCCCCeeeEeeccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCCCe
Q psy12697        424 DDMTLKIWSLDKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKT  503 (602)
Q Consensus       424 ~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~  503 (602)
                      .+..+..|.+........+..                              ...-..-.|..+.+-||++.+||++.|+.
T Consensus       225 a~dkl~~~Sl~~s~gslq~~~------------------------------e~~lknpGv~gvrIRpD~KIlATAGWD~R  274 (323)
T KOG0322|consen  225 ADDKLVMYSLNHSTGSLQIRK------------------------------EITLKNPGVSGVRIRPDGKILATAGWDHR  274 (323)
T ss_pred             ccccceeeeeccccCcccccc------------------------------eEEecCCCccceEEccCCcEEeecccCCc
Confidence            888899998864311111000                              00012234666777889999999999999


Q ss_pred             EEEEeCCCCceeeeecccCCCeeEeeecCCc-eEEEeeCCCcEEEeec
Q psy12697        504 TIIWDAASGQCEQQFSFHSAPALDVDWQSNT-SFASCSTDQHIHVCKL  550 (602)
Q Consensus       504 i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~-~l~~~~~d~~i~iw~~  550 (602)
                      |+||+.++..++..++.|.+.|.+++|+|+. .+|+++.|++|.+|++
T Consensus       275 iRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  275 IRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL  322 (323)
T ss_pred             EEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence            9999999999999999999999999999997 9999999999999986

>KOG0307|consensus

Probab=99.88  E-value=8.7e-22  Score=195.92  Aligned_cols=249  Identities=22%  Similarity=0.400  Sum_probs=193.6

Q ss_pred             CcceEEEEEcCCCCE----EEEeeCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEeeCCCCC-eEE
Q psy12697        222 ESEVFICAWNPVKDF----LASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGS-FLA  296 (602)
Q Consensus       222 ~~~v~~~~~~~~~~~----l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~  296 (602)
                      ....+.++|.+.+..    |+.|..||.|.+||............          ......|.+.|..+.|++.+. +||
T Consensus        64 ~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~----------la~~~~h~G~V~gLDfN~~q~nlLA  133 (1049)
T KOG0307|consen   64 SNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEV----------LATKSKHTGPVLGLDFNPFQGNLLA  133 (1049)
T ss_pred             cccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHH----------HhhhcccCCceeeeeccccCCceee
Confidence            456778899887755    88899999999999876311111100          112234689999999999654 999


Q ss_pred             EEeCCCeEEEEcCCCccee-e--cccccCCeEEEEEccCC-CEEEEEecCCcEEEEeCCCCceeEEeeeccC--Ceeeee
Q psy12697        297 TGSYDGYARIWTSDGSLKS-T--LGQHKGPIFALKWNKRG-NYILSAGVDKTTIIWDAASGQCEQQFSFHSA--PALDVD  370 (602)
Q Consensus       297 ~~~~dg~i~i~~~~~~~~~-~--~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~--~~~~~~  370 (602)
                      +|+.||.|.|||++..... .  -....+.|.+++|+..- ..|++++.+|.+.|||++..+.+..+..+..  .+..+.
T Consensus       134 SGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~  213 (1049)
T KOG0307|consen  134 SGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLA  213 (1049)
T ss_pred             ccCCCCcEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeee
Confidence            9999999999998752211 1  12356789999998754 4567888899999999999887777765544  467899


Q ss_pred             ccCC--CeEEEeeCCC---eEEEEEcCCC-ceeeEeccCCCCeEEEEECCCC-CEEEEEECCCeEEEEeCCCCeeeEeec
Q psy12697        371 WQSN--TSFASCSTDQ---HIHVCKLHSD-KPVKSFEGHTNEVNAIKWDPQG-LLLASCSDDMTLKIWSLDKDNCVHDLQ  443 (602)
Q Consensus       371 ~~~~--~~~~~~~~~~---~i~i~d~~~~-~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~  443 (602)
                      |+|+  ..+++++.|.   .|.+||++.. .+++.+++|...|.++.|++.+ .+|++++.|++|.+|+..+++.+..+.
T Consensus       214 WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p  293 (1049)
T KOG0307|consen  214 WHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELP  293 (1049)
T ss_pred             eCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecC
Confidence            9998  4577777654   5899999864 5788889999999999999965 899999999999999999999999988


Q ss_pred             cccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCc
Q psy12697        444 AHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQ  513 (602)
Q Consensus       444 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~~~~~  513 (602)
                      .....+..+.|.|..+                                 ..++.++.||.|.||.+....
T Consensus       294 ~~~nW~fdv~w~pr~P---------------------------------~~~A~asfdgkI~I~sl~~~~  330 (1049)
T KOG0307|consen  294 AQGNWCFDVQWCPRNP---------------------------------SVMAAASFDGKISIYSLQGTD  330 (1049)
T ss_pred             CCCcceeeeeecCCCc---------------------------------chhhhheeccceeeeeeecCC
Confidence            7777777777776543                                 468899999999999987654

>KOG1524|consensus

Probab=99.87  E-value=1.2e-20  Score=171.97  Aligned_cols=271  Identities=18%  Similarity=0.291  Sum_probs=205.9

Q ss_pred             CCCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEeeCCCCCeEEEEe
Q psy12697        220 GHESEVFICAWNPVKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFLATGS  299 (602)
Q Consensus       220 ~h~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  299 (602)
                      .|...|.++.|+.+...+.+++.+..+.-|++.+........+...........+.         +..=-.....|+.++
T Consensus        12 r~~e~vc~v~w~~~eei~~~~dDh~~~~~~~~~~~s~~~~~~p~df~pt~~h~~~r---------s~~~g~~~d~~~i~s   82 (737)
T KOG1524|consen   12 RNSEKVCCVDWSSNEEIYFVSDDHQIFKWSDVSRDSVEVAKLPDDFVPTDMHLGGR---------SSGGGKGSDTLLICS   82 (737)
T ss_pred             ccceeEEeecccccceEEEeccCceEEEeecccchhhhhhhCCcccCCcccccccc---------ccCCCCCcceEEEEc
Confidence            47777889999988777777766666666666554332111111110000000000         000001235788999


Q ss_pred             CCCeEEEEcCCCcceeecccccCCeEEEEEccCCCEEEEEecCCcEEEEeCCCCceeEEeeeccCCeeeeeccCCCeEEE
Q psy12697        300 YDGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTSFAS  379 (602)
Q Consensus       300 ~dg~i~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  379 (602)
                      .||.+.+.+..++.......|.+.+.+-.|+|+|.-|++++.||.|++|. ++|-....+.....++.|++|.|+..-+.
T Consensus        83 ~DGkf~il~k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~v~c~~W~p~S~~vl  161 (737)
T KOG1524|consen   83 NDGRFVILNKSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWS-RSGMLRSTVVQNEESIRCARWAPNSNSIV  161 (737)
T ss_pred             CCceEEEecccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEe-ccchHHHHHhhcCceeEEEEECCCCCceE
Confidence            99999999999999999999999999999999999999999999999998 55665556666778999999999977666


Q ss_pred             eeCCCeEEEEEcCCCceeeEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeeeEeeccccccEEEEEECCCCC
Q psy12697        380 CSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHDLQAHNKEIYTIKWSPTGP  459 (602)
Q Consensus       380 ~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~  459 (602)
                      -+..+.+.+-.+.....+...++|.+-|.++.|+|...++++|++|-..++||- .|..+..-..|..+|++++|.|+..
T Consensus       162 ~c~g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~-~G~~Lf~S~~~ey~ITSva~npd~~  240 (737)
T KOG1524|consen  162 FCQGGHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDA-QGANLFTSAAEEYAITSVAFNPEKD  240 (737)
T ss_pred             EecCCeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeecc-cCcccccCChhccceeeeeeccccc
Confidence            677788888888888888889999999999999999999999999999999995 4678888889999999999999933


Q ss_pred             CCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCCCeEEE
Q psy12697        460 ETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTII  506 (602)
Q Consensus       460 ~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~i  506 (602)
                       .+....+...    .-....+.|..++||+||..++.|...|.+.+
T Consensus       241 -~~v~S~nt~R----~~~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~  282 (737)
T KOG1524|consen  241 -YLLWSYNTAR----FSSPRVGSIFNLSWSADGTQATCGTSTGQLIV  282 (737)
T ss_pred             -eeeeeeeeee----ecCCCccceEEEEEcCCCceeeccccCceEEE
Confidence             3222222221    23346788999999999999999999887755

>KOG1587|consensus

Probab=99.87  E-value=5.4e-20  Score=178.34  Aligned_cols=277  Identities=22%  Similarity=0.323  Sum_probs=207.2

Q ss_pred             ceeeeecccceeeeeeeccCCceEEEEECC-CCCeEEEeeCCceEEEEecCCceeEEEeeccCceEEEEeCCCCCCCCCC
Q psy12697        121 TLPLWDVERGECLNTLTRHTEPVYSVAFSP-DGKFLASGSFDKCVHIWSARTGQLVHSYKGTGGIFEVCWNSRGTPPNPP  199 (602)
Q Consensus       121 ~i~vwd~~~~~~~~~l~~h~~~V~~~~~s~-d~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (602)
                      .+.||+++........-.-...|+|+.|+| +..+||.|..+|.|.+||++.+.....                      
T Consensus       223 ~~~vW~~~~p~~Pe~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~----------------------  280 (555)
T KOG1587|consen  223 VLLVWSLKNPNTPELVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPP----------------------  280 (555)
T ss_pred             eEEEEecCCCCCceEEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCC----------------------
Confidence            799999998744444444678999999999 677888889999999999987764210                      


Q ss_pred             CCccccccccccCCcceEeeCCCcceEEEEEcCCCC--EEEEeeCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCccc
Q psy12697        200 ESMEVDASIEIPQSKATKLIGHESEVFICAWNPVKD--FLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEV  277 (602)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~--~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (602)
                                  .........|..++..+.|..+-.  -+++++.||.|..|+++.-.............+    .+...
T Consensus       281 ------------s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~----~~~~~  344 (555)
T KOG1587|consen  281 ------------SGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKH----KGQQS  344 (555)
T ss_pred             ------------cccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccc----ccccc
Confidence                        000123346999999999987554  499999999999998775544222111111111    11222


Q ss_pred             CCCCceeEEeeCC-CCCeEEEEeCCCeEEEEcCCC---------cceeecccccCCeEEEEEccCCCEEEEEecCCcEEE
Q psy12697        278 PSNKDVTSLDWNN-NGSFLATGSYDGYARIWTSDG---------SLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTII  347 (602)
Q Consensus       278 ~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~~~~~---------~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~  347 (602)
                      .....+++++|.+ +-..+++|+.+|.|..-+..+         +.......|.++|.++.++|-+..++..+.|-+++|
T Consensus       345 ~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vri  424 (555)
T KOG1587|consen  345 SKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRI  424 (555)
T ss_pred             ccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCccceeeeeccceeEe
Confidence            3346789999988 556799999999988844332         123355678999999999998776665555999999


Q ss_pred             EeCC-CCceeEEeeeccCCeeeeeccCC--CeEEEeeCCCeEEEEEcCCC--ceeeEeccCCCCeEEEEECCCCCEEEEE
Q psy12697        348 WDAA-SGQCEQQFSFHSAPALDVDWQSN--TSFASCSTDQHIHVCKLHSD--KPVKSFEGHTNEVNAIKWDPQGLLLASC  422 (602)
Q Consensus       348 wd~~-~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~i~i~d~~~~--~~~~~~~~~~~~i~~~~~~~~~~~l~~~  422 (602)
                      |... ...++..+..+...+.+++|+|.  ..|+++..+|.+.+||+...  .++.+...+....+.+.|+++|+.|++|
T Consensus       425 Ws~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavG  504 (555)
T KOG1587|consen  425 WSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVG  504 (555)
T ss_pred             ccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCcccccccccccceeecCCCCcEEEEe
Confidence            9987 66667777777778999999997  46889999999999999654  5666666666778888999999999999


Q ss_pred             ECCCeEEEEeCCC
Q psy12697        423 SDDMTLKIWSLDK  435 (602)
Q Consensus       423 ~~dg~i~iwd~~~  435 (602)
                      ...|++.+|++..
T Consensus       505 d~~G~~~~~~l~~  517 (555)
T KOG1587|consen  505 DANGTTHILKLSE  517 (555)
T ss_pred             cCCCcEEEEEcCc
Confidence            9999999999864

>KOG1963|consensus

Probab=99.86  E-value=1.3e-18  Score=168.97  Aligned_cols=293  Identities=19%  Similarity=0.305  Sum_probs=212.4

Q ss_pred             CCCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEeeCCCCCeEEEEe
Q psy12697        220 GHESEVFICAWNPVKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFLATGS  299 (602)
Q Consensus       220 ~h~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  299 (602)
                      .|...+++.+++|++++++++..||.|.+|.--.... ........  |         -|...|++++|+++|.+|++|+
T Consensus       203 ~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~-~~~t~t~l--H---------WH~~~V~~L~fS~~G~~LlSGG  270 (792)
T KOG1963|consen  203 HHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSD-DSETCTLL--H---------WHHDEVNSLSFSSDGAYLLSGG  270 (792)
T ss_pred             hhcccceeEEeccccceEEEeccCCcEEEEecccccc-ccccceEE--E---------ecccccceeEEecCCceEeecc
Confidence            4777799999999999999999999999997433111 11111111  1         2467899999999999999999


Q ss_pred             CCCeEEEEcCCCcceeecccccCCeEEEEEccCCCEEEEEecCCcEEEEeCCCCceeEEeeecc-----------CCeee
Q psy12697        300 YDGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHS-----------APALD  368 (602)
Q Consensus       300 ~dg~i~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~-----------~~~~~  368 (602)
                      .+|.+.+|.+.....+.+..-.++|..+.++||+.+.+....|+.|.+....+.+....+.+..           .-.+.
T Consensus       271 ~E~VLv~Wq~~T~~kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~  350 (792)
T KOG1963|consen  271 REGVLVLWQLETGKKQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTG  350 (792)
T ss_pred             cceEEEEEeecCCCcccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCcccccccccccee
Confidence            9999999999877677788889999999999999999999999999999887766555444322           22445


Q ss_pred             eeccC-CCeEEEeeCCCeEEEEEcCCCceeeEecc-----------CCCCeEEEEECCCCCEEEEEEC--------C--C
Q psy12697        369 VDWQS-NTSFASCSTDQHIHVCKLHSDKPVKSFEG-----------HTNEVNAIKWDPQGLLLASCSD--------D--M  426 (602)
Q Consensus       369 ~~~~~-~~~~~~~~~~~~i~i~d~~~~~~~~~~~~-----------~~~~i~~~~~~~~~~~l~~~~~--------d--g  426 (602)
                      +...| .+.++..+..|.|.+||+.+.+.+..+..           +.-.++.++.+..|.+++|.-.        |  -
T Consensus       351 ~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~  430 (792)
T KOG1963|consen  351 VSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEV  430 (792)
T ss_pred             EEEcCCCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceE
Confidence            66677 46788899999999999998877665531           2234777888888999888742        2  2


Q ss_pred             eEEEEeCCCCeeeEeeccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEcc--CCCEEEEEeCCCeE
Q psy12697        427 TLKIWSLDKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNK--RGNYILSAGVDKTT  504 (602)
Q Consensus       427 ~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~--~~~~l~s~~~dg~i  504 (602)
                      .+++|-......-..+.                             ......|...+...++.+  .....++++.||.+
T Consensus       431 ~LKFW~~n~~~kt~~L~-----------------------------T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~  481 (792)
T KOG1963|consen  431 SLKFWQYNPNSKTFILN-----------------------------TKINNPHGNAFVATIFLNPTRSVRCVTASVDGDF  481 (792)
T ss_pred             EEEEEEEcCCcceeEEE-----------------------------EEEecCCCceeEEEEEecCcccceeEEeccCCeE
Confidence            46667654332221111                             001112444444443332  22379999999999


Q ss_pred             EEEeCCCC----------ceeeeecccCCCeeEeeecCCceEEEeeCCCcEEEeecCCC
Q psy12697        505 IIWDAASG----------QCEQQFSFHSAPALDVDWQSNTSFASCSTDQHIHVCKLHSD  553 (602)
Q Consensus       505 ~iwd~~~~----------~~~~~~~~~~~~v~~~~~s~~~~l~~~~~d~~i~iw~~~~~  553 (602)
                      ++|-+...          .|...-..|..++++++|+.||.+++++.|+.|.+||..+.
T Consensus       482 KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~dGslla~s~~~~Itiwd~~~~  540 (792)
T KOG1963|consen  482 KIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFSQDGSLLAVSFDDTITIWDYDTK  540 (792)
T ss_pred             EEEEEecccccCcCccceEEeeeeccccCcccchhhcCCCcEEEEecCCEEEEecCCCh
Confidence            99988332          23333334788999999999998888999999999999884

>KOG1188|consensus

Probab=99.85  E-value=4.6e-20  Score=159.13  Aligned_cols=265  Identities=19%  Similarity=0.275  Sum_probs=192.4

Q ss_pred             eeccceeeeecccceeeeeeeccCCceEEEEECC--CCCeEEEeeCCceEEEEecCCceeEEEeeccCceEEEEeCCCCC
Q psy12697        117 VHRLTLPLWDVERGECLNTLTRHTEPVYSVAFSP--DGKFLASGSFDKCVHIWSARTGQLVHSYKGTGGIFEVCWNSRGT  194 (602)
Q Consensus       117 ~~~~~i~vwd~~~~~~~~~l~~h~~~V~~~~~s~--d~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (602)
                      ...++|++||..+++.+..+++|...+..+.|..  .+..+.+++.||+|++||+++......+.               
T Consensus        47 lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~---------------  111 (376)
T KOG1188|consen   47 LSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARIS---------------  111 (376)
T ss_pred             ecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhhee---------------
Confidence            3457999999999999999999999999999987  56788999999999999998876554332               


Q ss_pred             CCCCCCCccccccccccCCcceEeeCCC-cceEEEEEcCCCCEEEEeeC----CCcEEEEeCCCCCCCCCccceEEEEEE
Q psy12697        195 PPNPPESMEVDASIEIPQSKATKLIGHE-SEVFICAWNPVKDFLASGSG----DSTARIWDMTDSTKKDPKELQIVLRHC  269 (602)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~l~~h~-~~v~~~~~~~~~~~l~s~~~----dg~i~iw~~~~~~~~~~~~~~~~~~~~  269 (602)
                                             ..++. .+..+++.+..++.+++|+.    +-.+.+||++..++..    .      
T Consensus       112 -----------------------~~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l----~------  158 (376)
T KOG1188|consen  112 -----------------------WTQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLL----R------  158 (376)
T ss_pred             -----------------------ccCCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchh----h------
Confidence                                   22233 45566666666777777754    6779999998776521    0      


Q ss_pred             ecCCCcccCCCCceeEEeeCC-CCCeEEEEeCCCeEEEEcCCCc----ceeecccccCCeEEEEEccCC-CEEEEEecCC
Q psy12697        270 ISKGGTEVPSNKDVTSLDWNN-NGSFLATGSYDGYARIWTSDGS----LKSTLGQHKGPIFALKWNKRG-NYILSAGVDK  343 (602)
Q Consensus       270 ~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~~~~~~----~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg  343 (602)
                          ...-.|...|+++.|+| +.++|++|+.||.|.+||++..    .+.....|...|..+.|..++ +.|.+-+...
T Consensus       159 ----~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~E  234 (376)
T KOG1188|consen  159 ----QLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHME  234 (376)
T ss_pred             ----hhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEccC
Confidence                12234689999999999 5678999999999999998743    223334577889999998776 4688888899


Q ss_pred             cEEEEeCCCCceeEEeeeccC------------Ceeeee-ccCCCeEEEeeC-CCeEEEEEcC---C---CceeeEecc-
Q psy12697        344 TTIIWDAASGQCEQQFSFHSA------------PALDVD-WQSNTSFASCST-DQHIHVCKLH---S---DKPVKSFEG-  402 (602)
Q Consensus       344 ~i~~wd~~~~~~~~~~~~~~~------------~~~~~~-~~~~~~~~~~~~-~~~i~i~d~~---~---~~~~~~~~~-  402 (602)
                      +..+|+++.+.+...+.....            .+.... -.....++.++. -+...++-+.   +   .+.+..+.+ 
T Consensus       235 tf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~  314 (376)
T KOG1188|consen  235 TFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGG  314 (376)
T ss_pred             ceeEEEccCCChhhcccCccchhhhHHhhhhhhheeecccCCCcceEEEeccccCceeEEEeeecccccccCccccccCC
Confidence            999999999876554433211            011111 111233444443 4555544433   2   345566666 


Q ss_pred             CCCCeEEEEECCCCCEEEEEECCCeEEEEeC
Q psy12697        403 HTNEVNAIKWDPQGLLLASCSDDMTLKIWSL  433 (602)
Q Consensus       403 ~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~  433 (602)
                      |..-|+++.|...+..+.+|++||.+.+|..
T Consensus       315 ~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~  345 (376)
T KOG1188|consen  315 HEEIVRDILFDVKNDVLYTGGEDGLLQAWKV  345 (376)
T ss_pred             cHHHHHHHhhhcccceeeccCCCceEEEEec
Confidence            6667889999999999999999999999985

>KOG1524|consensus

Probab=99.85  E-value=3.6e-20  Score=168.98  Aligned_cols=255  Identities=19%  Similarity=0.374  Sum_probs=186.9

Q ss_pred             cccCCeEEEEEccCCCEEEEEecCCcEEEEeCCCCceeEEeeeccCCee-eeec--------cCCCeEEEeeCCCeEEEE
Q psy12697        319 QHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPAL-DVDW--------QSNTSFASCSTDQHIHVC  389 (602)
Q Consensus       319 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~-~~~~--------~~~~~~~~~~~~~~i~i~  389 (602)
                      .|...+.++.|+.+...+.+++ |..+.+|..-+..........+..+. .+..        ..+..|+.++.||.+.+.
T Consensus        12 r~~e~vc~v~w~~~eei~~~~d-Dh~~~~~~~~~~~s~~~~~~p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf~il   90 (737)
T KOG1524|consen   12 RNSEKVCCVDWSSNEEIYFVSD-DHQIFKWSDVSRDSVEVAKLPDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRFVIL   90 (737)
T ss_pred             ccceeEEeecccccceEEEecc-CceEEEeecccchhhhhhhCCcccCCccccccccccCCCCCcceEEEEcCCceEEEe
Confidence            3555677888987766555554 55555554333332222222222111 1111        112459999999999988


Q ss_pred             EcCCCceeeEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeeeEeeccccccEEEEEECCCCCCCCCCCccee
Q psy12697        390 KLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLI  469 (602)
Q Consensus       390 d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  469 (602)
                      +- .++.-..+.+|.+.+.+-.|+|+|.-|++.++||.|++|. ++|-...++.....+|+|++|.|+...+.......+
T Consensus        91 ~k-~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~g~h~  168 (737)
T KOG1524|consen   91 NK-SARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWS-RSGMLRSTVVQNEESIRCARWAPNSNSIVFCQGGHI  168 (737)
T ss_pred             cc-cchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEe-ccchHHHHHhhcCceeEEEEECCCCCceEEecCCeE
Confidence            64 4555677889999999999999999999999999999998 566666667777889999999999876554444433


Q ss_pred             ee--e-----eeccCCccCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeeecccCCCeeEeeecCCceEEEeeCC
Q psy12697        470 FI--L-----KSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTSFASCSTD  542 (602)
Q Consensus       470 ~~--~-----~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~l~~~~~d  542 (602)
                      ..  +     ....+.|.+-|.++.|++..+++++|++|-..+|||.. |..+..-..|.-+|++++|.|+..++.++. 
T Consensus       169 ~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~-G~~Lf~S~~~ey~ITSva~npd~~~~v~S~-  246 (737)
T KOG1524|consen  169 SIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQ-GANLFTSAAEEYAITSVAFNPEKDYLLWSY-  246 (737)
T ss_pred             EEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeeccc-CcccccCChhccceeeeeeccccceeeeee-
Confidence            22  1     22456899999999999999999999999999999965 777888888999999999999965554443 


Q ss_pred             CcEEEeecCCCCceeeeecccccceEEEEecCCcEEEEEECCCCCeEEEeccCCeEEe
Q psy12697        543 QHIHVCKLHSDKPVKSFEGHTTGQLVHSYKGTGGIFEVCWNSRGDKVGASASDGSVFK  600 (602)
Q Consensus       543 ~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~v~i  600 (602)
                      ++.++            +...          .+.|..++|||||..+++|+..|.+.+
T Consensus       247 nt~R~------------~~p~----------~GSifnlsWS~DGTQ~a~gt~~G~v~~  282 (737)
T KOG1524|consen  247 NTARF------------SSPR----------VGSIFNLSWSADGTQATCGTSTGQLIV  282 (737)
T ss_pred             eeeee------------cCCC----------ccceEEEEEcCCCceeeccccCceEEE
Confidence            34441            1122          377999999999999999999998765

>KOG0642|consensus

Probab=99.85  E-value=2e-20  Score=171.99  Aligned_cols=275  Identities=22%  Similarity=0.268  Sum_probs=198.2

Q ss_pred             eeeeccCCceEEEEECCCCCeEEEeeCCceEEEEecCCceeEEEeeccCceEEEEeCCCCCCCCCCCCccccccccccCC
Q psy12697        134 NTLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKGTGGIFEVCWNSRGTPPNPPESMEVDASIEIPQS  213 (602)
Q Consensus       134 ~~l~~h~~~V~~~~~s~d~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  213 (602)
                      .++..|.+.|++++|.|-...|++++.||.+++|+++....-                                -.....
T Consensus       288 ~tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s--------------------------------~~~~~e  335 (577)
T KOG0642|consen  288 FTLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKS--------------------------------AEKDVE  335 (577)
T ss_pred             eeeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCc--------------------------------ccccee
Confidence            478889999999999999999999999999999999431100                                001112


Q ss_pred             cceEeeCCCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEeeCCCCC
Q psy12697        214 KATKLIGHESEVFICAWNPVKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGS  293 (602)
Q Consensus       214 ~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  293 (602)
                      +..++.+|.++|.|++..+++..+++|+-||+|+.|++..........-.      ....+...+|.+.+..+++++...
T Consensus       336 pi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp------~vl~~~l~Ghtdavw~l~~s~~~~  409 (577)
T KOG0642|consen  336 PILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDP------SVLSGTLLGHTDAVWLLALSSTKD  409 (577)
T ss_pred             eeEEEecccCceEEEEecCCceEEEeeccCceeeeeccCCCCCcccccCc------chhccceeccccceeeeeeccccc
Confidence            23677899999999999999999999999999999988733221111100      011234456788999999999999


Q ss_pred             eEEEEeCCCeEEEEcCCCcceeecccc--cCCeEEEEEccCC-CEEEEEecCCcEEEEeCCCCceeEEeeecc-------
Q psy12697        294 FLATGSYDGYARIWTSDGSLKSTLGQH--KGPIFALKWNKRG-NYILSAGVDKTTIIWDAASGQCEQQFSFHS-------  363 (602)
Q Consensus       294 ~l~~~~~dg~i~i~~~~~~~~~~~~~~--~~~i~~~~~~~~~-~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~-------  363 (602)
                      .|++++.||+++.|+..+....++...  .+.-..+.+.... .+.++...-+.-.+.++.....+..+....       
T Consensus       410 ~Llscs~DgTvr~w~~~~~~~~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~  489 (577)
T KOG0642|consen  410 RLLSCSSDGTVRLWEPTEESPCTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRY  489 (577)
T ss_pred             ceeeecCCceEEeeccCCcCccccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCccccc
Confidence            999999999999999775554333322  2233445544322 223333333334444444444444333211       


Q ss_pred             CCeeeeeccCC-CeEEEeeCCCeEEEEEcCCCceeeEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeeeEee
Q psy12697        364 APALDVDWQSN-TSFASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHDL  442 (602)
Q Consensus       364 ~~~~~~~~~~~-~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~  442 (602)
                      ..+..+.+.|+ ...+++..|+.|+++|..+++++.....|...++++++.|+|.+|++++.|+.+++|.+....++...
T Consensus       490 ~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~es  569 (577)
T KOG0642|consen  490 PQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVLES  569 (577)
T ss_pred             CccceEEecCCCCeeEecccCCceecccccccccchheeeccceecceeecCCCceEEeecCCceeehhhccchheeecc
Confidence            23455666665 55678889999999999999999999999999999999999999999999999999999887777665


Q ss_pred             cccc
Q psy12697        443 QAHN  446 (602)
Q Consensus       443 ~~~~  446 (602)
                      ..|.
T Consensus       570 ~~~r  573 (577)
T KOG0642|consen  570 TAHR  573 (577)
T ss_pred             cccc
Confidence            5543

>KOG0642|consensus

Probab=99.84  E-value=2.2e-20  Score=171.73  Aligned_cols=253  Identities=19%  Similarity=0.263  Sum_probs=188.7

Q ss_pred             cccCCCCceeEEeeCCCCCeEEEEeCCCeEEEEcCC---------CcceeecccccCCeEEEEEccCCCEEEEEecCCcE
Q psy12697        275 TEVPSNKDVTSLDWNNNGSFLATGSYDGYARIWTSD---------GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTT  345 (602)
Q Consensus       275 ~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~---------~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i  345 (602)
                      ....|...|+.++|.|....|++++.||.+.+|+++         -+.+.++.+|.++|.|+++.+++.++++|+.||+|
T Consensus       289 tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I  368 (577)
T KOG0642|consen  289 TLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTI  368 (577)
T ss_pred             eeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCcee
Confidence            445567889999999999999999999999999983         24567888999999999999999999999999999


Q ss_pred             EEEeCCCCceeEEeeeccCCeeeeeccCCCeEEEeeCCCeEEEEEcCCCceeeEeccCCCCeEEEEECCCCCEEEEEECC
Q psy12697        346 IIWDAASGQCEQQFSFHSAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDD  425 (602)
Q Consensus       346 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d  425 (602)
                      +.|++....-  .+..+                           |.  ......+.||.+.+..+++|+....|++++.|
T Consensus       369 ~~w~~p~n~d--p~ds~---------------------------dp--~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~D  417 (577)
T KOG0642|consen  369 RCWNLPPNQD--PDDSY---------------------------DP--SVLSGTLLGHTDAVWLLALSSTKDRLLSCSSD  417 (577)
T ss_pred             eeeccCCCCC--ccccc---------------------------Cc--chhccceeccccceeeeeecccccceeeecCC
Confidence            9998762210  00000                           00  01235678899999999999999999999999


Q ss_pred             CeEEEEeCCCCeeeEeecccc--ccEEEEEECCCCCCCCCCCcce-------------eeeeeecc---CCccCCeEEEE
Q psy12697        426 MTLKIWSLDKDNCVHDLQAHN--KEIYTIKWSPTGPETSNPNMSL-------------IFILKSTL---GQHKGPIFALK  487 (602)
Q Consensus       426 g~i~iwd~~~~~~~~~~~~~~--~~i~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~---~~~~~~v~~i~  487 (602)
                      |++++|+.....+ .++....  +....+.+....+.........             ...+....   ......+.-+.
T Consensus       418 gTvr~w~~~~~~~-~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vV  496 (577)
T KOG0642|consen  418 GTVRLWEPTEESP-CTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVV  496 (577)
T ss_pred             ceEEeeccCCcCc-cccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEE
Confidence            9999999876555 3333222  2223344333221111111100             01111111   11235677889


Q ss_pred             EccCCCEEEEEeCCCeEEEEeCCCCceeeeecccCCCeeEeeecCCc-eEEEeeCCCcEEEeecCCCCceeee
Q psy12697        488 WNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNT-SFASCSTDQHIHVCKLHSDKPVKSF  559 (602)
Q Consensus       488 ~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~-~l~~~~~d~~i~iw~~~~~~~~~~~  559 (602)
                      +.|.+.+.+++..|+.|+++|..+++.+.....|...++++++.|+| +|++++.|+.+++|.+....++...
T Consensus       497 s~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~es  569 (577)
T KOG0642|consen  497 SHPTADITFTAHEDRSIRFFDNKTGKILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVLES  569 (577)
T ss_pred             ecCCCCeeEecccCCceecccccccccchheeeccceecceeecCCCceEEeecCCceeehhhccchheeecc
Confidence            99999999999999999999999999999999999999999999999 9999999999999998765554433

>KOG1310|consensus

Probab=99.84  E-value=9.8e-19  Score=160.22  Aligned_cols=176  Identities=22%  Similarity=0.300  Sum_probs=133.6

Q ss_pred             eeeeeeeccCCceEEEEECCCCCeEEEeeCCceEEEEecCCceeEEEeeccCceEEEEeCCCCCCCCCCCCccccccccc
Q psy12697        131 ECLNTLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKGTGGIFEVCWNSRGTPPNPPESMEVDASIEI  210 (602)
Q Consensus       131 ~~~~~l~~h~~~V~~~~~s~d~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (602)
                      .+.+.|.||++.|.|++|+.||.+|++||.|-.+.|||.-..++++.+.                               
T Consensus        41 ~lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~-------------------------------   89 (758)
T KOG1310|consen   41 DLEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSIS-------------------------------   89 (758)
T ss_pred             chhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeee-------------------------------
Confidence            3446789999999999999999999999999999999998888776543                               


Q ss_pred             cCCcceEeeCCCcceEEEEEcCC--CCEEEEeeCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEee
Q psy12697        211 PQSKATKLIGHESEVFICAWNPV--KDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDW  288 (602)
Q Consensus       211 ~~~~~~~l~~h~~~v~~~~~~~~--~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  288 (602)
                              .||.+.|+++.|-|.  +..+++|..|..|+++|+...+......-....      ......|...|..++-
T Consensus        90 --------TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~------~~~~~cht~rVKria~  155 (758)
T KOG1310|consen   90 --------TGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEET------TRCWSCHTDRVKRIAT  155 (758)
T ss_pred             --------cccccceeEEeeeccCCCeEEEeccCcceEEEEecccccccccccCccch------hhhhhhhhhhhhheec
Confidence                    589999999999994  578999999999999999864332211111000      1112335677888999


Q ss_pred             CCCC-CeEEEEeCCCeEEEEcCCCccee-----------ecccccCCeEEEEEccCC-CEEEEEecCCcEEEEeCC
Q psy12697        289 NNNG-SFLATGSYDGYARIWTSDGSLKS-----------TLGQHKGPIFALKWNKRG-NYILSAGVDKTTIIWDAA  351 (602)
Q Consensus       289 ~~~~-~~l~~~~~dg~i~i~~~~~~~~~-----------~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~~wd~~  351 (602)
                      .|++ ..+.+++.||.++-+|++.....           .+...--...++..+|.. .+|++|+.|-..++||.+
T Consensus       156 ~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~R  231 (758)
T KOG1310|consen  156 APNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRR  231 (758)
T ss_pred             CCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhh
Confidence            9988 78899999999999997742111           111122356788999855 578899999999999954

>KOG1007|consensus

Probab=99.84  E-value=9.1e-19  Score=147.61  Aligned_cols=277  Identities=19%  Similarity=0.356  Sum_probs=191.0

Q ss_pred             eEeeCCCcceEEEEEcCCC-CEEEEeeCC-------CcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEe
Q psy12697        216 TKLIGHESEVFICAWNPVK-DFLASGSGD-------STARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLD  287 (602)
Q Consensus       216 ~~l~~h~~~v~~~~~~~~~-~~l~s~~~d-------g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  287 (602)
                      ..+..|.+.|+.++-+|.+ ..|+++..+       ..+.||.+................+      ....+-+.|.|+.
T Consensus        57 kvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~------Ldteavg~i~cve  130 (370)
T KOG1007|consen   57 KVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVAS------LDTEAVGKINCVE  130 (370)
T ss_pred             hhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhc------CCHHHhCceeeEE
Confidence            4456688999999999966 555555432       2478999876543311110000000      0111235799999


Q ss_pred             eCCCCCeEEEEeCCCeEEEEcCCCcc--eeec-----ccccCCeEEEEEcc--CCCEEEEEecCCcEEEEeCCCCceeEE
Q psy12697        288 WNNNGSFLATGSYDGYARIWTSDGSL--KSTL-----GQHKGPIFALKWNK--RGNYILSAGVDKTTIIWDAASGQCEQQ  358 (602)
Q Consensus       288 ~~~~~~~l~~~~~dg~i~i~~~~~~~--~~~~-----~~~~~~i~~~~~~~--~~~~l~~~~~dg~i~~wd~~~~~~~~~  358 (602)
                      |.|++..+++-. |..|.+|+++...  ...+     ..+....++-+|+|  +++.+++.+ |+++..||+++.++...
T Consensus       131 w~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~-d~tl~~~D~RT~~~~~s  208 (370)
T KOG1007|consen  131 WEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTS-DSTLQFWDLRTMKKNNS  208 (370)
T ss_pred             EcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeC-CCcEEEEEccchhhhcc
Confidence            999999988876 7889999987322  2211     23566788899998  777777664 88999999999877766


Q ss_pred             ee-eccCCeeeeeccCCCe--EEEeeCCCeEEEEEcCCC-ceeeEeccCCCCeEEEEECC-CCCEEEEEECCCeEEEEeC
Q psy12697        359 FS-FHSAPALDVDWQSNTS--FASCSTDQHIHVCKLHSD-KPVKSFEGHTNEVNAIKWDP-QGLLLASCSDDMTLKIWSL  433 (602)
Q Consensus       359 ~~-~~~~~~~~~~~~~~~~--~~~~~~~~~i~i~d~~~~-~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~iwd~  433 (602)
                      +. .|...+.++.|.|+..  +++|+.||.|++||.+.. .++..+.+|...|.++.|+| ..+++++|+.|..|.+|..
T Consensus       209 I~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca  288 (370)
T KOG1007|consen  209 IEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCA  288 (370)
T ss_pred             hhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCCCceeEEEec
Confidence            64 5777899999999854  889999999999999864 58999999999999999999 4568899999999999986


Q ss_pred             CCCeeeEeeccccccEEEEEECCCCCCCCC-CCcc----eeeeeeeccCCccCCeEEEEEccCCC-EEEEEeCCCeEEEE
Q psy12697        434 DKDNCVHDLQAHNKEIYTIKWSPTGPETSN-PNMS----LIFILKSTLGQHKGPIFALKWNKRGN-YILSAGVDKTTIIW  507 (602)
Q Consensus       434 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-~~~~----~~~~~~~~~~~~~~~v~~i~~s~~~~-~l~s~~~dg~i~iw  507 (602)
                      .+-.....+          .+.-+...... ....    ...-...++..|+..|.+++||.-.. .+|+-+.||.+.|=
T Consensus       289 ~svSSE~qi----------~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs  358 (370)
T KOG1007|consen  289 SSVSSEQQI----------EFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVIIS  358 (370)
T ss_pred             ccccccccc----------ccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccCceEEee
Confidence            542211111          11111100000 0000    11112346778999999999988555 56788999999887


Q ss_pred             eCC
Q psy12697        508 DAA  510 (602)
Q Consensus       508 d~~  510 (602)
                      .+.
T Consensus       359 ~V~  361 (370)
T KOG1007|consen  359 SVP  361 (370)
T ss_pred             cCC
Confidence            664

>KOG4227|consensus

Probab=99.83  E-value=6e-19  Score=154.86  Aligned_cols=298  Identities=14%  Similarity=0.174  Sum_probs=214.4

Q ss_pred             eEeeCCCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEeeCCCCCeE
Q psy12697        216 TKLIGHESEVFICAWNPVKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFL  295 (602)
Q Consensus       216 ~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l  295 (602)
                      +.+.+|.+.|.++.|+.++++|++|+.|..+++|+++..-.........+         ..-+|...|.|++|....+++
T Consensus        50 KD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~---------~~~~H~SNIF~L~F~~~N~~~  120 (609)
T KOG4227|consen   50 KDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGV---------MEHPHRSNIFSLEFDLENRFL  120 (609)
T ss_pred             hhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCcee---------ccCccccceEEEEEccCCeeE
Confidence            55779999999999999999999999999999999875432221111111         223566889999999999999


Q ss_pred             EEEeCCCeEEEEcCCCcceeeccccc---CCeEEEEEccCCCEEEEEecCCcEEEEeCCCCce-eEE--eeeccCCeeee
Q psy12697        296 ATGSYDGYARIWTSDGSLKSTLGQHK---GPIFALKWNKRGNYILSAGVDKTTIIWDAASGQC-EQQ--FSFHSAPALDV  369 (602)
Q Consensus       296 ~~~~~dg~i~i~~~~~~~~~~~~~~~---~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~-~~~--~~~~~~~~~~~  369 (602)
                      ++|..+++|..-|+..+.......|.   +.|..+..+|-.+.|++.+.++.|.+||.+.... ...  ..........+
T Consensus       121 ~SG~~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~  200 (609)
T KOG4227|consen  121 YSGERWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTA  200 (609)
T ss_pred             ecCCCcceeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceee
Confidence            99999999999999865554444444   4899999999999999999999999999987652 111  12233455667


Q ss_pred             eccCC--CeEEEeeCCCeEEEEEcCCCc-eeeEec------cCCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeeeE
Q psy12697        370 DWQSN--TSFASCSTDQHIHVCKLHSDK-PVKSFE------GHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVH  440 (602)
Q Consensus       370 ~~~~~--~~~~~~~~~~~i~i~d~~~~~-~~~~~~------~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~  440 (602)
                      .|.|.  ..+++.+..+-+.+||.+..+ ++....      .......++.|+|+|..|.+.-....-.+||+-+.++..
T Consensus       201 ~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V  280 (609)
T KOG4227|consen  201 EFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFV  280 (609)
T ss_pred             eecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeeccccee
Confidence            77776  458888889999999987643 222221      122234678899999988877665556677776543322


Q ss_pred             eeccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCC--------
Q psy12697        441 DLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASG--------  512 (602)
Q Consensus       441 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~~~~--------  512 (602)
                      --..|+.         ++.                  -....+.+++|-.|-. +++|+.+-.|++|.+...        
T Consensus       281 ~k~D~N~---------~GY------------------~N~~T~KS~~F~~D~~-v~tGSD~~~i~~WklP~~~ds~G~~~  332 (609)
T KOG4227|consen  281 LKSDHNP---------NGY------------------CNIKTIKSMTFIDDYT-VATGSDHWGIHIWKLPRANDSYGFTQ  332 (609)
T ss_pred             EeccCCC---------Ccc------------------eeeeeeeeeeeeccee-eeccCcccceEEEecCCCccccCccc
Confidence            1111111         110                  0123455667765544 999999999999987431        


Q ss_pred             ---------------ceeeeecccCCCeeEeeecCCc-eEEEeeCCCcEEEeec
Q psy12697        513 ---------------QCEQQFSFHSAPALDVDWQSNT-SFASCSTDQHIHVCKL  550 (602)
Q Consensus       513 ---------------~~~~~~~~~~~~v~~~~~s~~~-~l~~~~~d~~i~iw~~  550 (602)
                                     +.+..+++|.+-+..+.|+|.. .|++.+-.+.+++|.-
T Consensus       333 IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~H~~~l~SSGVE~~~KlWS~  386 (609)
T KOG4227|consen  333 IGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQHNNLLVSSGVENSFKLWSD  386 (609)
T ss_pred             cCcchhhCchhheecceeEEEecccccccceeecCCcceEeccchhhheecccc
Confidence                           1235678899999999999999 8889999999999974

>KOG0290|consensus

Probab=99.83  E-value=2.4e-18  Score=145.20  Aligned_cols=284  Identities=18%  Similarity=0.304  Sum_probs=198.3

Q ss_pred             CceeEEeeCC---CCCeEEEEeC----CCeEEEEcCC---Ccceee-cccccCCeEEEEEccCCC----EEEEEecCCcE
Q psy12697        281 KDVTSLDWNN---NGSFLATGSY----DGYARIWTSD---GSLKST-LGQHKGPIFALKWNKRGN----YILSAGVDKTT  345 (602)
Q Consensus       281 ~~i~~~~~~~---~~~~l~~~~~----dg~i~i~~~~---~~~~~~-~~~~~~~i~~~~~~~~~~----~l~~~~~dg~i  345 (602)
                      -.+.++.|+.   ...+|+.|+.    .+.|.+..++   ++.+.. ...|.-+++.+.|.|+..    .|++.+ +..+
T Consensus        45 ~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlLATs-~D~L  123 (364)
T KOG0290|consen   45 WPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYPDLLATS-SDFL  123 (364)
T ss_pred             CceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCcchhhcc-cCeE
Confidence            4577888874   3446787764    3566665543   222221 136888999999999863    233333 3479


Q ss_pred             EEEeCCCCceeE----E-----eeeccCCeeeeeccCC--CeEEEeeCCCeEEEEEcCCCce---eeEeccCCCCeEEEE
Q psy12697        346 IIWDAASGQCEQ----Q-----FSFHSAPALDVDWQSN--TSFASCSTDQHIHVCKLHSDKP---VKSFEGHTNEVNAIK  411 (602)
Q Consensus       346 ~~wd~~~~~~~~----~-----~~~~~~~~~~~~~~~~--~~~~~~~~~~~i~i~d~~~~~~---~~~~~~~~~~i~~~~  411 (602)
                      ++|.+...+...    .     -..+..+++++.|..-  +.+.+++-|-+..|||+.++..   ..++-+|..+|..++
T Consensus       124 RlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIa  203 (364)
T KOG0290|consen  124 RLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIA  203 (364)
T ss_pred             EEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEE
Confidence            999887422111    1     1234568888998763  6788999999999999998743   567788999999999


Q ss_pred             ECCCC-CEEEEEECCCeEEEEeCCCCeeeEeeccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEcc
Q psy12697        412 WDPQG-LLLASCSDDMTLKIWSLDKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNK  490 (602)
Q Consensus       412 ~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~  490 (602)
                      |...+ +.+|+.+.||.+|+||++..+-...+.....                               ...+...++|++
T Consensus       204 f~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~-------------------------------~~~pLlRLswnk  252 (364)
T KOG0290|consen  204 FLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPS-------------------------------PSTPLLRLSWNK  252 (364)
T ss_pred             eccCccceEEEecCCCcEEEEEecccccceEEecCCC-------------------------------CCCcceeeccCc
Confidence            99854 5789999999999999997543222211111                               123444555555


Q ss_pred             -CCCEEEEEeCC-CeEEEEeCCCC-ceeeeecccCCCeeEeeecCCc--eEEEeeCCCcEEEeecCCCCceeeeeccccc
Q psy12697        491 -RGNYILSAGVD-KTTIIWDAASG-QCEQQFSFHSAPALDVDWQSNT--SFASCSTDQHIHVCKLHSDKPVKSFEGHTTG  565 (602)
Q Consensus       491 -~~~~l~s~~~d-g~i~iwd~~~~-~~~~~~~~~~~~v~~~~~s~~~--~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~  565 (602)
                       |-+|+|+-..| ..|.|.|++.. .++..+++|.+.|+.++|.|..  .|.+++.|..+.+||+..--.      ....
T Consensus       253 qDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~------~~~~  326 (364)
T KOG0290|consen  253 QDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPR------ENGE  326 (364)
T ss_pred             CCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccc------cCCC
Confidence             45788876655 56999999864 5679999999999999999987  999999999999999865321      0111


Q ss_pred             ceEEEEecCCcEEEEEECC-CCCeEEEeccCCeEEeeC
Q psy12697        566 QLVHSYKGTGGIFEVCWNS-RGDKVGASASDGSVFKNV  602 (602)
Q Consensus       566 ~~~~~~~~~~~i~~l~~sp-dg~~l~~~~~dg~v~i~v  602 (602)
                      .++..+...++|..+.|+| .+.+++++.....=.++|
T Consensus       327 dPilay~a~~EVNqi~Ws~~~~Dwiai~~~kkleiLRV  364 (364)
T KOG0290|consen  327 DPILAYTAGGEVNQIQWSSSQPDWIAICFGKKLEILRV  364 (364)
T ss_pred             CchhhhhccceeeeeeecccCCCEEEEEecCeeeEEeC
Confidence            2333344568899999996 567898888776555544

>KOG0303|consensus

Probab=99.83  E-value=1e-18  Score=153.61  Aligned_cols=208  Identities=16%  Similarity=0.354  Sum_probs=162.2

Q ss_pred             eeecccccCCeEEEEEcc-CCCEEEEEecCCcEEEEeCCCCceeEEeeeccCCeeeeeccCCCeEEEeeCCCeEEEEEcC
Q psy12697        314 KSTLGQHKGPIFALKWNK-RGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTSFASCSTDQHIHVCKLH  392 (602)
Q Consensus       314 ~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~  392 (602)
                      ...+.+|.++|..+.|+| +.+.|++|+.|.+|.+|.+..+-....+                                 
T Consensus        74 ~P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~l---------------------------------  120 (472)
T KOG0303|consen   74 YPLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDL---------------------------------  120 (472)
T ss_pred             CCCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCc---------------------------------
Confidence            345678999999999999 4567889999999999998765332211                                 


Q ss_pred             CCceeeEeccCCCCeEEEEECCC-CCEEEEEECCCeEEEEeCCCCeeeEeeccccccEEEEEECCCCCCCCCCCcceeee
Q psy12697        393 SDKPVKSFEGHTNEVNAIKWDPQ-GLLLASCSDDMTLKIWSLDKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFI  471 (602)
Q Consensus       393 ~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~  471 (602)
                       .+++..+.+|...|--++|+|. .+.|++++.|.+|.+|++.+++.+.++.                            
T Consensus       121 -tepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tgeali~l~----------------------------  171 (472)
T KOG0303|consen  121 -TEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEALITLD----------------------------  171 (472)
T ss_pred             -ccceEEEeecceeEEEEeecccchhhHhhccCCceEEEEeccCCceeeecC----------------------------
Confidence             2577889999999999999994 4688999999999999999998887765                            


Q ss_pred             eeeccCCccCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeeecccCCC-eeEeeecCCceEEEee----CCCcEE
Q psy12697        472 LKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAP-ALDVDWQSNTSFASCS----TDQHIH  546 (602)
Q Consensus       472 ~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~-v~~~~~s~~~~l~~~~----~d~~i~  546 (602)
                             |...|.++.|+.||.+|++.+.|..|+|||.++++.+..-.+|.+. -..+.|-.+|.+++.+    ++..+-
T Consensus       172 -------hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~tTGfsr~seRq~a  244 (472)
T KOG0303|consen  172 -------HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIFTTGFSRMSERQIA  244 (472)
T ss_pred             -------CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCceeeecccccccccee
Confidence                   4455566666778899999999999999999999999888888763 5567777788566554    467899


Q ss_pred             EeecCCCCceeeeecccccceEEEEecCCcEEEEEECCCCCeEEEecc-CCeEE
Q psy12697        547 VCKLHSDKPVKSFEGHTTGQLVHSYKGTGGIFEVCWNSRGDKVGASAS-DGSVF  599 (602)
Q Consensus       547 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~-dg~v~  599 (602)
                      +||-.+-+         ..-....+.....|.---|+||.+++..++. |+.|+
T Consensus       245 Lwdp~nl~---------eP~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~IR  289 (472)
T KOG0303|consen  245 LWDPNNLE---------EPIALQELDTSNGVLLPFYDPDTSIVYLCGKGDSSIR  289 (472)
T ss_pred             ccCccccc---------CcceeEEeccCCceEEeeecCCCCEEEEEecCCcceE
Confidence            99976532         2233445555667777778999998866654 88776

>KOG0649|consensus

Probab=99.83  E-value=8.8e-18  Score=138.18  Aligned_cols=273  Identities=15%  Similarity=0.236  Sum_probs=186.8

Q ss_pred             ceEEEEECCCCCeEEEeeCCceEEEEecCCceeEEEeeccCceEEEEeCCCCCCCCCCCCccccccccccCCcceEeeCC
Q psy12697        142 PVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKGTGGIFEVCWNSRGTPPNPPESMEVDASIEIPQSKATKLIGH  221 (602)
Q Consensus       142 ~V~~~~~s~d~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h  221 (602)
                      .|.+-+++|.+++|+.|+.+|.|.+..+.+...-...                              .-.+.+.....+|
T Consensus        12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~------------------------------~~gk~~iv~eqah   61 (325)
T KOG0649|consen   12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAE------------------------------PPGKLKIVPEQAH   61 (325)
T ss_pred             HHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccC------------------------------CCCCcceeecccc
Confidence            3455688999999999999999999988643211000                              0011122344789


Q ss_pred             CcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCC-CccceEEEEEEecCCCcccCCCCceeEEeeCCCCCeEEEEeC
Q psy12697        222 ESEVFICAWNPVKDFLASGSGDSTARIWDMTDSTKKD-PKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFLATGSY  300 (602)
Q Consensus       222 ~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~  300 (602)
                      .++|+.++|.  +.+|++|+ ||.|+-|......... ...+-...    .+.......-..|+++...|..+-++.++.
T Consensus        62 dgpiy~~~f~--d~~Lls~g-dG~V~gw~W~E~~es~~~K~lwe~~----~P~~~~~~evPeINam~ldP~enSi~~AgG  134 (325)
T KOG0649|consen   62 DGPIYYLAFH--DDFLLSGG-DGLVYGWEWNEEEESLATKRLWEVK----IPMQVDAVEVPEINAMWLDPSENSILFAGG  134 (325)
T ss_pred             CCCeeeeeee--hhheeecc-CceEEEeeehhhhhhccchhhhhhc----CccccCcccCCccceeEeccCCCcEEEecC
Confidence            9999999998  55677765 4999999887654311 11000000    000000111346899999998888888889


Q ss_pred             CCeEEEEcCC-CcceeecccccCCeEEEEEccCCCEEEEEecCCcEEEEeCCCCceeEEeeeccCC-ee-------eeec
Q psy12697        301 DGYARIWTSD-GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAP-AL-------DVDW  371 (602)
Q Consensus       301 dg~i~i~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~-~~-------~~~~  371 (602)
                      |+.++-||++ |+....+.+|.+.|.++.--.....+++|+.||++++||.++++++..+.....+ ..       -.+.
T Consensus       135 D~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigal  214 (325)
T KOG0649|consen  135 DGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGAL  214 (325)
T ss_pred             CeEEEEEEecCCEEEEEEcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEE
Confidence            9999999987 7788899999999999998555667999999999999999999999887653322 11       1222


Q ss_pred             cCCCeEEEeeCCCeEEEEEcCCCceeeEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeeeEeeccccccEEE
Q psy12697        372 QSNTSFASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHDLQAHNKEIYT  451 (602)
Q Consensus       372 ~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~  451 (602)
                      ..+...++|+....+.+|.+++.++...+. ....+..+.|..+  .+++++..+.|.-|.+. |.............++
T Consensus       215 a~~edWlvCGgGp~lslwhLrsse~t~vfp-ipa~v~~v~F~~d--~vl~~G~g~~v~~~~l~-Gvl~a~ip~~s~~c~s  290 (325)
T KOG0649|consen  215 AVNEDWLVCGGGPKLSLWHLRSSESTCVFP-IPARVHLVDFVDD--CVLIGGEGNHVQSYTLN-GVLQANIPVESTACYS  290 (325)
T ss_pred             eccCceEEecCCCceeEEeccCCCceEEEe-cccceeEeeeecc--eEEEeccccceeeeeec-cEEEEeccCCccceee
Confidence            334556777888899999999998877776 3455777778644  67788877889988865 3333333333333444


Q ss_pred             EEEC
Q psy12697        452 IKWS  455 (602)
Q Consensus       452 ~~~~  455 (602)
                      ..|+
T Consensus       291 ~s~~  294 (325)
T KOG0649|consen  291 ASWQ  294 (325)
T ss_pred             eccc
Confidence            4443

>KOG0644|consensus

Probab=99.83  E-value=1.3e-20  Score=180.67  Aligned_cols=263  Identities=20%  Similarity=0.322  Sum_probs=202.7

Q ss_pred             eeeeeeeccCCceEEEEECCCCCeEEEeeCCceEEEEecCCceeEEEeeccCceEEEEeCCCCCCCCCCCCccccccccc
Q psy12697        131 ECLNTLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKGTGGIFEVCWNSRGTPPNPPESMEVDASIEI  210 (602)
Q Consensus       131 ~~~~~l~~h~~~V~~~~~s~d~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (602)
                      +.++.|.||.++|.|+.|...|.++++|+.|..|+||..+++.++                                   
T Consensus       181 k~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~l-----------------------------------  225 (1113)
T KOG0644|consen  181 KNIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCL-----------------------------------  225 (1113)
T ss_pred             HHHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhh-----------------------------------
Confidence            456778899999999999999999999999999999999999887                                   


Q ss_pred             cCCcceEeeCCCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEeeCC
Q psy12697        211 PQSKATKLIGHESEVFICAWNPVKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNN  290 (602)
Q Consensus       211 ~~~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  290 (602)
                           ..+.||.+.|+.++.+.++.++++++.|..|++|.+.++....                ....|.+.|++++|+|
T Consensus       226 -----As~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~pvs----------------vLrghtgavtaiafsP  284 (1113)
T KOG0644|consen  226 -----ASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDGAPVS----------------VLRGHTGAVTAIAFSP  284 (1113)
T ss_pred             -----ccCCCCccccchhccchhhhhhhhcccCceEEEEecCCCchHH----------------HHhccccceeeeccCc
Confidence                 4567899999999999999999999999999999998876542                2345689999999999


Q ss_pred             CCCeEEEEeCCCeEEEEcCCCcceeec-----ccccCCeEEEEEccCCCEEEEEecCCcEEEEeCCCCceeEEeeeccCC
Q psy12697        291 NGSFLATGSYDGYARIWTSDGSLKSTL-----GQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAP  365 (602)
Q Consensus       291 ~~~~l~~~~~dg~i~i~~~~~~~~~~~-----~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~  365 (602)
                      -.    +.+.||++++||.+-......     ......+.++.|..++..+++++.|+.-..|.+....+..      ..
T Consensus       285 ~~----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~~~------~~  354 (1113)
T KOG0644|consen  285 RA----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQLAWRS------NL  354 (1113)
T ss_pred             cc----cCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccccccccCCcccccchhhHhhhhc------cc
Confidence            54    678899999999772222111     1223557778888888999999999998888765322111      11


Q ss_pred             eeeeeccC--CCeEEEeeCCCeEEEEEcCCCceeeEeccCCCCeEEEEECC-CCCEEEEEECCCeEEEEeCCCCeeeEee
Q psy12697        366 ALDVDWQS--NTSFASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDP-QGLLLASCSDDMTLKIWSLDKDNCVHDL  442 (602)
Q Consensus       366 ~~~~~~~~--~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~  442 (602)
                      +.-+..+.  +...++.-.+..+.+|++.++...+.+.+|...+..+.++| +.+...+++.||...|||+-.+.+++..
T Consensus       355 lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y  434 (1113)
T KOG0644|consen  355 LIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHY  434 (1113)
T ss_pred             eEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhhhccCCCceEeeecccCCcceee
Confidence            11111111  13345566677889999999999999999999999999999 5566678999999999999988887766


Q ss_pred             ccccccEEEEEECCCCC
Q psy12697        443 QAHNKEIYTIKWSPTGP  459 (602)
Q Consensus       443 ~~~~~~i~~~~~~~~~~  459 (602)
                      ......+...+|+++|.
T Consensus       435 ~~gh~kl~d~kFSqdgt  451 (1113)
T KOG0644|consen  435 FIGHGKLVDGKFSQDGT  451 (1113)
T ss_pred             ecccceeeccccCCCCc
Confidence            54444444555555443

>KOG1587|consensus

Probab=99.83  E-value=2.5e-18  Score=166.94  Aligned_cols=260  Identities=20%  Similarity=0.310  Sum_probs=193.7

Q ss_pred             CcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEeeCC-CCCeEEEEeCCCeEEEEcCCCcce-------e
Q psy12697        244 STARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNN-NGSFLATGSYDGYARIWTSDGSLK-------S  315 (602)
Q Consensus       244 g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~~~~~~~~-------~  315 (602)
                      +.+.+|++......     ...           ......|+|+.|+| +..+++.|+.+|.|.+||+.....       .
T Consensus       222 ~~~~vW~~~~p~~P-----e~~-----------~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~  285 (555)
T KOG1587|consen  222 GVLLVWSLKNPNTP-----ELV-----------LESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSA  285 (555)
T ss_pred             ceEEEEecCCCCCc-----eEE-----------EecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCccccc
Confidence            47899999876221     111           11257899999999 667888999999999999874322       2


Q ss_pred             ecccccCCeEEEEEccCCCE--EEEEecCCcEEEEeCCCCceeEEe------e------eccCCeeeeeccCC--CeEEE
Q psy12697        316 TLGQHKGPIFALKWNKRGNY--ILSAGVDKTTIIWDAASGQCEQQF------S------FHSAPALDVDWQSN--TSFAS  379 (602)
Q Consensus       316 ~~~~~~~~i~~~~~~~~~~~--l~~~~~dg~i~~wd~~~~~~~~~~------~------~~~~~~~~~~~~~~--~~~~~  379 (602)
                      ....|..++..+.|..+..-  +++++.||.|..|+++........      .      .....++++.|.+.  ..|++
T Consensus       286 ~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiV  365 (555)
T KOG1587|consen  286 LEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIV  365 (555)
T ss_pred             ccccCCcCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEE
Confidence            33468899999999875544  999999999999988754331111      1      12235677777664  67999


Q ss_pred             eeCCCeEEEEEcCCCc--------eeeEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEeCC-CCeeeEeeccccccEE
Q psy12697        380 CSTDQHIHVCKLHSDK--------PVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLD-KDNCVHDLQAHNKEIY  450 (602)
Q Consensus       380 ~~~~~~i~i~d~~~~~--------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~~~i~  450 (602)
                      |+.+|.|.--.....+        ....+..|.+.|.++.++|-+..++..+.|.+++||... ...++..+..+...++
T Consensus       366 GTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~  445 (555)
T KOG1587|consen  366 GTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVT  445 (555)
T ss_pred             EcCCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccceee
Confidence            9999999885544332        234566788999999999976655555559999999988 6677777777777777


Q ss_pred             EEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCC--ceeeeecccCCCeeEe
Q psy12697        451 TIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASG--QCEQQFSFHSAPALDV  528 (602)
Q Consensus       451 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~~~~--~~~~~~~~~~~~v~~~  528 (602)
                      +++|||..+                                 ..++++..||.|.+||+...  .++.+...+....+.+
T Consensus       446 ~vaWSptrp---------------------------------avF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~  492 (555)
T KOG1587|consen  446 DVAWSPTRP---------------------------------AVFATVDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRV  492 (555)
T ss_pred             eeEEcCcCc---------------------------------eEEEEEcCCCceehhhhhccccCCccccccccccccee
Confidence            778777654                                 46889999999999998643  4555555566677888


Q ss_pred             eecCCc-eEEEeeCCCcEEEeecCC
Q psy12697        529 DWQSNT-SFASCSTDQHIHVCKLHS  552 (602)
Q Consensus       529 ~~s~~~-~l~~~~~d~~i~iw~~~~  552 (602)
                      .|+++| .|++|...|.+.+|++..
T Consensus       493 ~~s~~g~~lavGd~~G~~~~~~l~~  517 (555)
T KOG1587|consen  493 RWSPNGKLLAVGDANGTTHILKLSE  517 (555)
T ss_pred             ecCCCCcEEEEecCCCcEEEEEcCc
Confidence            899989 999999999999999853

>KOG1007|consensus

Probab=99.82  E-value=2.4e-18  Score=145.10  Aligned_cols=276  Identities=20%  Similarity=0.315  Sum_probs=191.0

Q ss_pred             CCeEEEEeC----CCeEEEEcCCC--c--ceeecccccCCeEEEEEccCCCEEEE-EecC-------CcEEEEeCCCCc-
Q psy12697        292 GSFLATGSY----DGYARIWTSDG--S--LKSTLGQHKGPIFALKWNKRGNYILS-AGVD-------KTTIIWDAASGQ-  354 (602)
Q Consensus       292 ~~~l~~~~~----dg~i~i~~~~~--~--~~~~~~~~~~~i~~~~~~~~~~~l~~-~~~d-------g~i~~wd~~~~~-  354 (602)
                      .-.|++|+.    |+.|.+.+++.  .  ....+..|.+.|..++-+|-.+.+++ +..+       -.+.||.+.... 
T Consensus        26 ~icFlvgTnslK~dNqVhll~~d~e~s~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~  105 (370)
T KOG1007|consen   26 HICFLVGTNSLKEDNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLG  105 (370)
T ss_pred             ceEEEEeccccCCcceeEEEEecCccchhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccC
Confidence            334555553    56777776542  1  23456678899999999996665554 3321       246789876432 


Q ss_pred             --------eeEEee-eccCCeeeeeccCCCeEEEeeCCCeEEEEEcCCCce-eeEec-----cCCCCeEEEEECC--CCC
Q psy12697        355 --------CEQQFS-FHSAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKP-VKSFE-----GHTNEVNAIKWDP--QGL  417 (602)
Q Consensus       355 --------~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~-~~~~~-----~~~~~i~~~~~~~--~~~  417 (602)
                              ++..+. .+-+.+.++.|.|++.-+++-.+..|.+|++..... +..+.     ++....++-+|+|  +|+
T Consensus       106 ~S~~~tlE~v~~Ldteavg~i~cvew~Pns~klasm~dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgn  185 (370)
T KOG1007|consen  106 QSNSSTLECVASLDTEAVGKINCVEWEPNSDKLASMDDNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGN  185 (370)
T ss_pred             ccccchhhHhhcCCHHHhCceeeEEEcCCCCeeEEeccCceEEEEcccCcchheeecccccccccceecccccCCCCccc
Confidence                    222232 234578999999998777777799999999988765 33322     2455688889999  788


Q ss_pred             EEEEEECCCeEEEEeCCCCeeeEeec-cccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEE
Q psy12697        418 LLASCSDDMTLKIWSLDKDNCVHDLQ-AHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYIL  496 (602)
Q Consensus       418 ~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~  496 (602)
                      .+++. .|+++..||+++.++...+. .|...+..+.|.|+.                                 ..+|+
T Consensus       186 qv~tt-~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnk---------------------------------q~~lv  231 (370)
T KOG1007|consen  186 QVATT-SDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNK---------------------------------QHILV  231 (370)
T ss_pred             eEEEe-CCCcEEEEEccchhhhcchhhhhcceeeeccCCCCc---------------------------------eEEEE
Confidence            88776 46899999999887766654 344445555555542                                 24689


Q ss_pred             EEeCCCeEEEEeCCC-CceeeeecccCCCeeEeeecCCc--eEEEeeCCCcEEEeecCCCCceee---------eec---
Q psy12697        497 SAGVDKTTIIWDAAS-GQCEQQFSFHSAPALDVDWQSNT--SFASCSTDQHIHVCKLHSDKPVKS---------FEG---  561 (602)
Q Consensus       497 s~~~dg~i~iwd~~~-~~~~~~~~~~~~~v~~~~~s~~~--~l~~~~~d~~i~iw~~~~~~~~~~---------~~~---  561 (602)
                      +|+.||.|++||.+. ..+++++.+|...|.++.|+|..  .+++++.|..|.+|...+-.-...         .+.   
T Consensus       232 t~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~ds  311 (370)
T KOG1007|consen  232 TCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDS  311 (370)
T ss_pred             EcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhh
Confidence            999999999999975 46789999999999999999976  899999999999998754210000         011   


Q ss_pred             ------ccccceEEEEecCCcEEEEEECCCCCeE-EEeccCCeEEee
Q psy12697        562 ------HTTGQLVHSYKGTGGIFEVCWNSRGDKV-GASASDGSVFKN  601 (602)
Q Consensus       562 ------~~~~~~~~~~~~~~~i~~l~~spdg~~l-~~~~~dg~v~i~  601 (602)
                            ..+|.+...-.+...|++++||.-..++ |+-+.||.+.|.
T Consensus       312 eer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs  358 (370)
T KOG1007|consen  312 EERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVIIS  358 (370)
T ss_pred             HHhcccccccccccccccccceEEEeeccCCCeeEEEeccCceEEee
Confidence                  1122222222346789999999877765 666779998874

>KOG1188|consensus

Probab=99.82  E-value=1e-18  Score=150.92  Aligned_cols=276  Identities=17%  Similarity=0.246  Sum_probs=192.0

Q ss_pred             CeEEEeeCCceEEEEecCCceeEEEeeccCceEEEEeCCCCCCCCCCCCccccccccccCCcceEeeCCCcceEEEEEcC
Q psy12697        153 KFLASGSFDKCVHIWSARTGQLVHSYKGTGGIFEVCWNSRGTPPNPPESMEVDASIEIPQSKATKLIGHESEVFICAWNP  232 (602)
Q Consensus       153 ~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~  232 (602)
                      ..+|++-..|+|++||..+|+.+..|+                                        ++...+..+.|..
T Consensus        41 ~~vav~lSngsv~lyd~~tg~~l~~fk----------------------------------------~~~~~~N~vrf~~   80 (376)
T KOG1188|consen   41 TAVAVSLSNGSVRLYDKGTGQLLEEFK----------------------------------------GPPATTNGVRFIS   80 (376)
T ss_pred             eeEEEEecCCeEEEEeccchhhhheec----------------------------------------CCCCcccceEEec
Confidence            568888899999999999998886554                                        5666677788876


Q ss_pred             C--CCEEEEeeCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEeeCCCCCeEEEEeC----CCeEEE
Q psy12697        233 V--KDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFLATGSY----DGYARI  306 (602)
Q Consensus       233 ~--~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~----dg~i~i  306 (602)
                      +  ...+.+|+.||+|++||++...........             .....+..|++.+-.++.+++|+.    +-.|.+
T Consensus        81 ~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~-------------~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~l  147 (376)
T KOG1188|consen   81 CDSPHGVISCSSDGTVRLWDIRSQAESARISWT-------------QQSGTPFICLDLNCKKNIIACGTELTRSDASVVL  147 (376)
T ss_pred             CCCCCeeEEeccCCeEEEEEeecchhhhheecc-------------CCCCCcceEeeccCcCCeEEeccccccCceEEEE
Confidence            3  478999999999999999887654332221             011356788888878888888864    568999


Q ss_pred             EcCCCcc---eeecccccCCeEEEEEccC-CCEEEEEecCCcEEEEeCCCCcee---EEeeeccCCeeeeeccCCC--eE
Q psy12697        307 WTSDGSL---KSTLGQHKGPIFALKWNKR-GNYILSAGVDKTTIIWDAASGQCE---QQFSFHSAPALDVDWQSNT--SF  377 (602)
Q Consensus       307 ~~~~~~~---~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~i~~wd~~~~~~~---~~~~~~~~~~~~~~~~~~~--~~  377 (602)
                      ||.+...   ......|...|++++|+|+ .+.|++|+.||-|.++|++.....   ...-.+...|..+.|..++  ++
T Consensus       148 wDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI  227 (376)
T KOG1188|consen  148 WDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRI  227 (376)
T ss_pred             EEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcchhhHHHhhcccceeeeeeeecCCcceE
Confidence            9987432   2345679999999999995 478899999999999998765321   1222355668899999887  79


Q ss_pred             EEeeCCCeEEEEEcCCCceeeEeccCC------------CCeEEEEECC-CCCEEEEEEC-CCeEEEEeCCCCeeeEeec
Q psy12697        378 ASCSTDQHIHVCKLHSDKPVKSFEGHT------------NEVNAIKWDP-QGLLLASCSD-DMTLKIWSLDKDNCVHDLQ  443 (602)
Q Consensus       378 ~~~~~~~~i~i~d~~~~~~~~~~~~~~------------~~i~~~~~~~-~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~  443 (602)
                      .+-+..+...+|+++.+.+...+....            ..+-.. .+| ++..++.++. -+...++-+.........+
T Consensus       228 ~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~-~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~  306 (376)
T KOG1188|consen  228 MCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINE-HSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLT  306 (376)
T ss_pred             EEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeec-ccCCCcceEEEeccccCceeEEEeeecccccccC
Confidence            999999999999999887655443221            011111 123 3445555444 4555555443211111110


Q ss_pred             cccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCCCeEEEEeC
Q psy12697        444 AHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDA  509 (602)
Q Consensus       444 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~  509 (602)
                      .                           ....-.+|..-|.++.|...+..+.|||+||.+.+|..
T Consensus       307 ~---------------------------~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~  345 (376)
T KOG1188|consen  307 E---------------------------PAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWKV  345 (376)
T ss_pred             c---------------------------cccccCCcHHHHHHHhhhcccceeeccCCCceEEEEec
Confidence            0                           00012236677788888888999999999999999985

>KOG4227|consensus

Probab=99.82  E-value=1.4e-18  Score=152.55  Aligned_cols=288  Identities=18%  Similarity=0.264  Sum_probs=210.8

Q ss_pred             eeeeeccCCceEEEEECCCCCeEEEeeCCceEEEEecCCc------eeEEEe--eccCceEEEEeCCCCCCCCCCCCccc
Q psy12697        133 LNTLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTG------QLVHSY--KGTGGIFEVCWNSRGTPPNPPESMEV  204 (602)
Q Consensus       133 ~~~l~~h~~~V~~~~~s~d~~~l~s~~~d~~v~iwd~~~~------~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~  204 (602)
                      .+.+.+|.+.|.++.||.++++||+|+.|..+++|+++..      +.+...  .....|++++|......+.....-..
T Consensus        49 qKD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~  128 (609)
T KOG4227|consen   49 QKDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGT  128 (609)
T ss_pred             hhhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcce
Confidence            3457889999999999999999999999999999998643      333222  22367899999887766555544443


Q ss_pred             cccccccCCcceEeeCCCc---ceEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCC
Q psy12697        205 DASIEIPQSKATKLIGHES---EVFICAWNPVKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNK  281 (602)
Q Consensus       205 ~~~~~~~~~~~~~l~~h~~---~v~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  281 (602)
                      ...-.+..........|..   .|+.+..+|..+.|++.+.++.|.+||+..........+.       .      ....
T Consensus       129 VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~-------A------N~~~  195 (609)
T KOG4227|consen  129 VIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLP-------A------NSGK  195 (609)
T ss_pred             eEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeee-------c------CCCc
Confidence            3334444444455556655   8999999999999999999999999999876532111111       0      1235


Q ss_pred             ceeEEeeCCCC-CeEEEEeCCCeEEEEcCCCcceee--------cccccCCeEEEEEccCCCEEEEEecCCcEEEEeCCC
Q psy12697        282 DVTSLDWNNNG-SFLATGSYDGYARIWTSDGSLKST--------LGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAAS  352 (602)
Q Consensus       282 ~i~~~~~~~~~-~~l~~~~~dg~i~i~~~~~~~~~~--------~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~  352 (602)
                      ....+.|+|.. .+|++.+..+-+-+||.+......        +......-..+.|+|+|+.|++.-....-.+||+-+
T Consensus       196 ~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S  275 (609)
T KOG4227|consen  196 NFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFIS  275 (609)
T ss_pred             cceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeec
Confidence            67888999954 567888888999999976432211        112222346789999999999887777777888876


Q ss_pred             CceeE-Eeee------ccCCeeeeeccCCCeEEEeeCCCeEEEEEcCCC-----------------------ceeeEecc
Q psy12697        353 GQCEQ-QFSF------HSAPALDVDWQSNTSFASCSTDQHIHVCKLHSD-----------------------KPVKSFEG  402 (602)
Q Consensus       353 ~~~~~-~~~~------~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~-----------------------~~~~~~~~  402 (602)
                      .++.. ++..      ....+.+++|..+..+++|+.+-.|++|.+...                       +.+..+++
T Consensus       276 ~R~~V~k~D~N~~GY~N~~T~KS~~F~~D~~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrG  355 (609)
T KOG4227|consen  276 QRCFVLKSDHNPNGYCNIKTIKSMTFIDDYTVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRG  355 (609)
T ss_pred             ccceeEeccCCCCcceeeeeeeeeeeecceeeeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEec
Confidence            54432 2221      123467788888988999999999999987421                       23567789


Q ss_pred             CCCCeEEEEECCCCCEEEEEECCCeEEEEeC
Q psy12697        403 HTNEVNAIKWDPQGLLLASCSDDMTLKIWSL  433 (602)
Q Consensus       403 ~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~  433 (602)
                      |..-++.+.|+|...+|++.+-...++||.-
T Consensus       356 HRSv~NQVRF~~H~~~l~SSGVE~~~KlWS~  386 (609)
T KOG4227|consen  356 HRSVPNQVRFSQHNNLLVSSGVENSFKLWSD  386 (609)
T ss_pred             ccccccceeecCCcceEeccchhhheecccc
Confidence            9999999999999999999999999999964

>KOG0649|consensus

Probab=99.82  E-value=2.4e-17  Score=135.68  Aligned_cols=277  Identities=17%  Similarity=0.231  Sum_probs=196.5

Q ss_pred             cceEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEeeCCCCCeEEEEeCCC
Q psy12697        223 SEVFICAWNPVKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFLATGSYDG  302 (602)
Q Consensus       223 ~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg  302 (602)
                      ..|..-+|+|.+++|++|..+|.|.+..+.+-...........      +...+..|..++..++|..  .+|++|+ ||
T Consensus        11 ~tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~------~iv~eqahdgpiy~~~f~d--~~Lls~g-dG   81 (325)
T KOG0649|consen   11 NTVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKL------KIVPEQAHDGPIYYLAFHD--DFLLSGG-DG   81 (325)
T ss_pred             HHHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCc------ceeeccccCCCeeeeeeeh--hheeecc-Cc
Confidence            3466778999999999999999999999865432211111100      0112356789999999983  3566655 49


Q ss_pred             eEEEEcCCCc-------ce--eecccc-----cCCeEEEEEccCCCEEEEEecCCcEEEEeCCCCceeEEeeeccCCeee
Q psy12697        303 YARIWTSDGS-------LK--STLGQH-----KGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALD  368 (602)
Q Consensus       303 ~i~i~~~~~~-------~~--~~~~~~-----~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~  368 (602)
                      .|+-|.-+..       ..  .....|     -..|+++...|..+-++.++.|+.+..||+++|+..+.+++|...+.+
T Consensus        82 ~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~  161 (325)
T KOG0649|consen   82 LVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHS  161 (325)
T ss_pred             eEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeee
Confidence            9998863211       00  011112     235889999998888888889999999999999999999999999999


Q ss_pred             eec-cCCCeEEEeeCCCeEEEEEcCCCceeeEeccC---------C-CCeEEEEECCCCCEEEEEECCCeEEEEeCCCCe
Q psy12697        369 VDW-QSNTSFASCSTDQHIHVCKLHSDKPVKSFEGH---------T-NEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDN  437 (602)
Q Consensus       369 ~~~-~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~---------~-~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~  437 (602)
                      +.- +.++.+++|++||++++||.++++.+..+...         . ..|-+++.+  ..+|++|+. ..+.+|.+++.+
T Consensus       162 vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~--edWlvCGgG-p~lslwhLrsse  238 (325)
T KOG0649|consen  162 VVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVN--EDWLVCGGG-PKLSLWHLRSSE  238 (325)
T ss_pred             eeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEecc--CceEEecCC-CceeEEeccCCC
Confidence            987 66788999999999999999999988776532         2 236666655  458888765 469999999988


Q ss_pred             eeEeeccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCceeee
Q psy12697        438 CVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQ  517 (602)
Q Consensus       438 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~  517 (602)
                      +...+.- ...+..                                  +.|-  .+.+++++..+.|.-|.+. |.+...
T Consensus       239 ~t~vfpi-pa~v~~----------------------------------v~F~--~d~vl~~G~g~~v~~~~l~-Gvl~a~  280 (325)
T KOG0649|consen  239 STCVFPI-PARVHL----------------------------------VDFV--DDCVLIGGEGNHVQSYTLN-GVLQAN  280 (325)
T ss_pred             ceEEEec-ccceeE----------------------------------eeee--cceEEEeccccceeeeeec-cEEEEe
Confidence            7776642 222333                                  3332  3468888888899999875 666666


Q ss_pred             ecccCCCeeEeeecCCc--eEEEeeCCCcEEEee
Q psy12697        518 FSFHSAPALDVDWQSNT--SFASCSTDQHIHVCK  549 (602)
Q Consensus       518 ~~~~~~~v~~~~~s~~~--~l~~~~~d~~i~iw~  549 (602)
                      ....+...++..|+..-  .|-.++....+.|+.
T Consensus       281 ip~~s~~c~s~s~~~~p~k~~s~ag~s~~~~i~~  314 (325)
T KOG0649|consen  281 IPVESTACYSASWQTSPIKFISIAGFSNKLHILK  314 (325)
T ss_pred             ccCCccceeeecccCCceEEEEecccceeeeeee
Confidence            66555566666665444  555566667776653

>KOG1240|consensus

Probab=99.81  E-value=9.2e-18  Score=168.14  Aligned_cols=378  Identities=14%  Similarity=0.129  Sum_probs=223.5

Q ss_pred             eecccceeeeeeeccCCceEEEEECCCC-CeEEEeeCCceEEEEecCCceeE-EEeeccCceEEEEeCCCCCCCCCCCCc
Q psy12697        125 WDVERGECLNTLTRHTEPVYSVAFSPDG-KFLASGSFDKCVHIWSARTGQLV-HSYKGTGGIFEVCWNSRGTPPNPPESM  202 (602)
Q Consensus       125 wd~~~~~~~~~l~~h~~~V~~~~~s~d~-~~l~s~~~d~~v~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  202 (602)
                      |++ +|..+..|..|+..|..++.+++. .+++|||.||+|++||.+.-..- .+++     ..                
T Consensus      1034 W~p-~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~r-----S~---------------- 1091 (1431)
T KOG1240|consen 1034 WNP-RGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSAR-----SE---------------- 1091 (1431)
T ss_pred             CCc-cceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceee-----ee----------------
Confidence            554 689999999999999999998755 99999999999999998653211 0000     01                


Q ss_pred             cccccccccCCcceEeeCCCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCC-
Q psy12697        203 EVDASIEIPQSKATKLIGHESEVFICAWNPVKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNK-  281 (602)
Q Consensus       203 ~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  281 (602)
                                   .++.--...+.++.+.+.++.+|.++.||.|++.+++...............        .....+ 
T Consensus      1092 -------------ltys~~~sr~~~vt~~~~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~--------n~~~~g~ 1150 (1431)
T KOG1240|consen 1092 -------------LTYSPEGSRVEKVTMCGNGDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIP--------NLKKDGV 1150 (1431)
T ss_pred             -------------EEEeccCCceEEEEeccCCCeEEEEcCCCeEEEEEccccccccceeeeeecc--------cccCCCc
Confidence                         2222346778899999999999999999999999998742221111110000        001112 


Q ss_pred             ceeEEeeCC-CCC-eEEEEeCCCeEEEEcCCCcce---eecccccCCeEEEEEccCCCEEEEEecCCcEEEEeCCCCcee
Q psy12697        282 DVTSLDWNN-NGS-FLATGSYDGYARIWTSDGSLK---STLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCE  356 (602)
Q Consensus       282 ~i~~~~~~~-~~~-~l~~~~~dg~i~i~~~~~~~~---~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~  356 (602)
                      -+..-++.. .+. .++.+...+.|..||......   .......+.|++++.+|.+++++.|+..|.+.+||++-+..+
T Consensus      1151 vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i 1230 (1431)
T KOG1240|consen 1151 VVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPI 1230 (1431)
T ss_pred             eEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeEEEecCCceEEEEecCCceEEEEEeecCcee
Confidence            233334443 233 788888999999999774322   222334578999999999999999999999999999876655


Q ss_pred             EEeeeccCCeeeeeccCCCeEEEeeCCCeEEEEEcCCCceeeEeccCCCCeEEEEECC---CCCEEEEEE--CCCeEEEE
Q psy12697        357 QQFSFHSAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDP---QGLLLASCS--DDMTLKIW  431 (602)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~---~~~~l~~~~--~dg~i~iw  431 (602)
                      ..+..                                        ++..+|+.+..+|   .....++++  ..+.|.+|
T Consensus      1231 ~sw~~----------------------------------------P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~w 1270 (1431)
T KOG1240|consen 1231 LSWEH----------------------------------------PARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTW 1270 (1431)
T ss_pred             ecccC----------------------------------------cccCCcceEEeeccCCCCceEEEecccCCCceeee
Confidence            44331                                        1223455555554   223444443  46789999


Q ss_pred             eCCCCeeeEeeccccccEEEEEE-CCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCCCeEEEEeCC
Q psy12697        432 SLDKDNCVHDLQAHNKEIYTIKW-SPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAA  510 (602)
Q Consensus       432 d~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~~  510 (602)
                      ++.++.+...+...++ ...+.+ .|...               ....+.-......+...+..+.+|+.|..|+.||..
T Consensus      1271 n~~~g~~~~vl~~s~~-~p~ls~~~Ps~~---------------~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~ 1334 (1431)
T KOG1240|consen 1271 NMETGLRQTVLWASDG-APILSYALPSND---------------ARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPT 1334 (1431)
T ss_pred             ecccCcceEEEEcCCC-Ccchhhhccccc---------------CCCCCcccceeeecccCCceeeecCCccceeeccCC
Confidence            9998876666654311 111111 11100               000122223334444456789999999999999987


Q ss_pred             CCcee-eeecccCCCeeEeeecCCceEEEeeCCCcEEE-eecCCCC--ceeeeecccccceEEEEecCCcEEEEEECCC-
Q psy12697        511 SGQCE-QQFSFHSAPALDVDWQSNTSFASCSTDQHIHV-CKLHSDK--PVKSFEGHTTGQLVHSYKGTGGIFEVCWNSR-  585 (602)
Q Consensus       511 ~~~~~-~~~~~~~~~v~~~~~s~~~~l~~~~~d~~i~i-w~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd-  585 (602)
                      ..+.. ....+.+........+.+-.++.++.--...+ .....+-  ..........+.......++.+|+++++-.. 
T Consensus      1335 ~p~~ss~~~~~~s~~~~~~~~s~~~~~i~~~~~i~e~i~~~~tv~~t~~~~~~~~~~~~~~~ps~~H~d~Itdma~~~~~ 1414 (1431)
T KOG1240|consen 1335 RPEISSYAVPGPSTSYSTNSESYDLSTIPGSQFIDEFIIYQQTVGLTEALRENQKLRPGPSDPSTYHHDPITDMATLKSE 1414 (1431)
T ss_pred             CcccccccccCccccccccchhccccccCCCccchhhhhhhhhcCchhhcccccccccCCCCCcccccchhhhhhhhccC
Confidence            65543 22222222233333333223343332111111 1111110  0001111112222223334678999987654 


Q ss_pred             CCeEEEeccCCeEEee
Q psy12697        586 GDKVGASASDGSVFKN  601 (602)
Q Consensus       586 g~~l~~~~~dg~v~i~  601 (602)
                      ..+|++++.||.|+|+
T Consensus      1415 q~llvs~s~dG~IkiW 1430 (1431)
T KOG1240|consen 1415 QPLLVSSSRDGVIKIW 1430 (1431)
T ss_pred             ccEEEEecCCCeeeec
Confidence            4689999999999985

>KOG0322|consensus

Probab=99.81  E-value=7.1e-19  Score=146.35  Aligned_cols=252  Identities=15%  Similarity=0.223  Sum_probs=191.6

Q ss_pred             eeecccccCCeEEEEEccCCCEEEEEecCCcEEEEeCCCCceeEEee-eccCCeeeeeccCCCeEEEeeCCCeEEEEEcC
Q psy12697        314 KSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFS-FHSAPALDVDWQSNTSFASCSTDQHIHVCKLH  392 (602)
Q Consensus       314 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~  392 (602)
                      ...+..|.+.++++.|..+++ |+++..-|.|++|++.+.+....++ .+...++.+...|++.+.+-+.|+.+.+|++.
T Consensus         7 ~fvLRp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~d~l~tqgRd~~L~lw~ia   85 (323)
T KOG0322|consen    7 FFVLRPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPNDSLDTQGRDPLLILWTIA   85 (323)
T ss_pred             eeEeccccchheehhhccchh-hhcccccceEEEEEeecCccchhhhhhccceeeceeecCCcchhhcCCCceEEEEEcc
Confidence            345568899999999988765 9999999999999999998888888 67778888888899999999999999999986


Q ss_pred             CCceeeE--e-------------------------c--------------------------cCCCCeEEEEECC-CC--
Q psy12697        393 SDKPVKS--F-------------------------E--------------------------GHTNEVNAIKWDP-QG--  416 (602)
Q Consensus       393 ~~~~~~~--~-------------------------~--------------------------~~~~~i~~~~~~~-~~--  416 (602)
                      ....+..  +                         .                          +..+.+.+..+.. ++  
T Consensus        86 ~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~  165 (323)
T KOG0322|consen   86 YSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGST  165 (323)
T ss_pred             CcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeeccccccce
Confidence            5221100  0                         0                          0122344443222 12  


Q ss_pred             CEEEEEECCCeEEEEeCCCCeeeEeeccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEE
Q psy12697        417 LLLASCSDDMTLKIWSLDKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYIL  496 (602)
Q Consensus       417 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~  496 (602)
                      -+|+.|-++|.+.+||+.++..+..+......+                        .....|..+|.++.+.+.-..=+
T Consensus       166 ~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~------------------------~~~ash~qpvlsldyas~~~rGi  221 (323)
T KOG0322|consen  166 FLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVE------------------------SPNASHKQPVLSLDYASSCDRGI  221 (323)
T ss_pred             EEEEEeccCCeEEEEEccCCceeeccccccccc------------------------cchhhccCcceeeeechhhcCCc
Confidence            256778889999999999886555554322211                        12345888888888887666667


Q ss_pred             EEeCCCeEEEEeCCCC--cee--eeecccCCCeeEeeecCCc-eEEEeeCCCcEEEeecCCCCceeeeecccccceEEEE
Q psy12697        497 SAGVDKTTIIWDAASG--QCE--QQFSFHSAPALDVDWQSNT-SFASCSTDQHIHVCKLHSDKPVKSFEGHTTGQLVHSY  571 (602)
Q Consensus       497 s~~~dg~i~iwd~~~~--~~~--~~~~~~~~~v~~~~~s~~~-~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~  571 (602)
                      +|+.+..+..|++...  .+.  .........|..+..-||+ .+|+++.|++||||..++.+++..++-|.        
T Consensus       222 sgga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHs--------  293 (323)
T KOG0322|consen  222 SGGADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHS--------  293 (323)
T ss_pred             CCCccccceeeeeccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhh--------
Confidence            8888888999988643  222  2233334568899999999 99999999999999999999999998887        


Q ss_pred             ecCCcEEEEEECCCCCeEEEeccCCeEEee
Q psy12697        572 KGTGGIFEVCWNSRGDKVGASASDGSVFKN  601 (602)
Q Consensus       572 ~~~~~i~~l~~spdg~~l~~~~~dg~v~i~  601 (602)
                         +.|.+++|+||..++|+++.|+.|.++
T Consensus       294 ---agvn~vAfspd~~lmAaaskD~rISLW  320 (323)
T KOG0322|consen  294 ---AGVNAVAFSPDCELMAAASKDARISLW  320 (323)
T ss_pred             ---cceeEEEeCCCCchhhhccCCceEEee
Confidence               669999999999999999999999875

>KOG1517|consensus

Probab=99.81  E-value=7.9e-18  Score=166.01  Aligned_cols=285  Identities=18%  Similarity=0.271  Sum_probs=207.7

Q ss_pred             CcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEeeCC--CCCeEEEEe
Q psy12697        222 ESEVFICAWNPVKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNN--NGSFLATGS  299 (602)
Q Consensus       222 ~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~l~~~~  299 (602)
                      ..+-..+.|+|-...++++...-.|++||.+.++....+...             .+....|+.+.+-.  |..++++|+
T Consensus      1064 ~~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~-------------~~~~t~Vs~l~liNe~D~aLlLtas 1130 (1387)
T KOG1517|consen 1064 NQPPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNG-------------AFPDTRVSDLELINEQDDALLLTAS 1130 (1387)
T ss_pred             CCCCceeeecCCCceeEEcCCcceEEEEecccCceeccccCC-------------CCCCCccceeeeecccchhheeeec
Confidence            345667889999999999998889999999988764433222             12356788888866  557899999


Q ss_pred             CCCeEEEEcCC--C----cceeecc-------cccCCeEEEEEccCCCEEEEEecCCcEEEEeCCCCceeEEeeeccC-C
Q psy12697        300 YDGYARIWTSD--G----SLKSTLG-------QHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSA-P  365 (602)
Q Consensus       300 ~dg~i~i~~~~--~----~~~~~~~-------~~~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~-~  365 (602)
                      .||.|+||+--  .    +++....       +..+.=.-+.|.....+|+++|.-..|+|||.....+...+..... .
T Consensus      1131 ~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~ 1210 (1387)
T KOG1517|consen 1131 SDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTL 1210 (1387)
T ss_pred             cCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCcc
Confidence            99999999832  1    1222111       1112224567877777888888788999999998888777765433 3


Q ss_pred             eeeeec--cCCCeEEEeeCCCeEEEEEcCCC---ceeeEeccCCCC--eEEEEECCCCCE-EEEEECCCeEEEEeCCCCe
Q psy12697        366 ALDVDW--QSNTSFASCSTDQHIHVCKLHSD---KPVKSFEGHTNE--VNAIKWDPQGLL-LASCSDDMTLKIWSLDKDN  437 (602)
Q Consensus       366 ~~~~~~--~~~~~~~~~~~~~~i~i~d~~~~---~~~~~~~~~~~~--i~~~~~~~~~~~-l~~~~~dg~i~iwd~~~~~  437 (602)
                      ++.+.-  ..++.+++|..||.|++||.+..   ..+...+.|+..  |..+.+.++|-. |++|+.||.|++||++...
T Consensus      1211 vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~ 1290 (1387)
T KOG1517|consen 1211 VTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSS 1290 (1387)
T ss_pred             ceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCc
Confidence            444332  23478999999999999998764   357778889887  999999997755 9999999999999998742


Q ss_pred             eeEeec--cccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCcee
Q psy12697        438 CVHDLQ--AHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCE  515 (602)
Q Consensus       438 ~~~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~~~~~~~  515 (602)
                      ....+.  .|.                               ...+..+++..+++...+|+|+. +.|+||++. |+.+
T Consensus      1291 ~e~~~~iv~~~-------------------------------~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~-G~~l 1337 (1387)
T KOG1517|consen 1291 KETFLTIVAHW-------------------------------EYGSALTALTVHEHAPIIASGSA-QLIKIYSLS-GEQL 1337 (1387)
T ss_pred             ccccceeeecc-------------------------------ccCccceeeeeccCCCeeeecCc-ceEEEEecC-hhhh
Confidence            111111  100                               01124778888888889999988 999999986 5555


Q ss_pred             eeeccc-------CCCeeEeeecCCc-eEEEeeCCCcEEEeecCC
Q psy12697        516 QQFSFH-------SAPALDVDWQSNT-SFASCSTDQHIHVCKLHS  552 (602)
Q Consensus       516 ~~~~~~-------~~~v~~~~~s~~~-~l~~~~~d~~i~iw~~~~  552 (602)
                      ..++.+       .+.+.|++|+|-. .+|+|+.|..|.||....
T Consensus      1338 ~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k 1382 (1387)
T KOG1517|consen 1338 NIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEK 1382 (1387)
T ss_pred             cccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEeecCC
Confidence            544432       3467999999999 999999999999998543

>KOG2110|consensus

Probab=99.81  E-value=3e-17  Score=143.58  Aligned_cols=235  Identities=13%  Similarity=0.213  Sum_probs=174.1

Q ss_pred             cCCeEEEEEccCCCEEEEEecCCcEEEEeCCCCceeEEeeeccCCeeeeeccCCCeEEEeeCC-CeEEEEEcCCCceeeE
Q psy12697        321 KGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTSFASCSTD-QHIHVCKLHSDKPVKS  399 (602)
Q Consensus       321 ~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~i~d~~~~~~~~~  399 (602)
                      ...+..+.|..+...|..|+.|| .++++................|..+-|+..-..+++-.+ ..+++++.+.+..+..
T Consensus         5 ~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~~~~~~~~~IvEmLFSSSLvaiV~~~qpr~Lkv~~~Kk~~~ICe   83 (391)
T KOG2110|consen    5 KPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCFSKDTEGVSIVEMLFSSSLVAIVSIKQPRKLKVVHFKKKTTICE   83 (391)
T ss_pred             CcceeeeeeccceeEEEccCCCc-eeEEecCchHHhhcccCCCeEEEEeecccceeEEEecCCCceEEEEEcccCceEEE
Confidence            34567777998888888888887 677777655443223333344555566555433333322 4588999888877776


Q ss_pred             eccCCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeeeEeeccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCc
Q psy12697        400 FEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQH  479 (602)
Q Consensus       400 ~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  479 (602)
                      +. ....|.++.++.+  .|+++=.+. |+|||+++.+.++++..-.                               .+
T Consensus        84 ~~-fpt~IL~VrmNr~--RLvV~Lee~-IyIydI~~MklLhTI~t~~-------------------------------~n  128 (391)
T KOG2110|consen   84 IF-FPTSILAVRMNRK--RLVVCLEES-IYIYDIKDMKLLHTIETTP-------------------------------PN  128 (391)
T ss_pred             Ee-cCCceEEEEEccc--eEEEEEccc-EEEEecccceeehhhhccC-------------------------------CC
Confidence            65 4566888888654  666665554 9999999999998876431                               13


Q ss_pred             cCCeEEEEEccCCCEEEEEe--CCCeEEEEeCCCCceeeeecccCCCeeEeeecCCc-eEEEeeCCCc-EEEeecCCCCc
Q psy12697        480 KGPIFALKWNKRGNYILSAG--VDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNT-SFASCSTDQH-IHVCKLHSDKP  555 (602)
Q Consensus       480 ~~~v~~i~~s~~~~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~-~l~~~~~d~~-i~iw~~~~~~~  555 (602)
                      ...+.++.+++.+.|+|--+  ..|.|.+||+.+-+.+..+..|.+++.+++|+++| +||+++..|+ |||+.+.+|+.
T Consensus       129 ~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~k  208 (391)
T KOG2110|consen  129 PKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQK  208 (391)
T ss_pred             ccceEeeccCCCCceEEecCCCCCceEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccE
Confidence            33445555555667887532  36899999999999999999999999999999999 9999999997 69999988888


Q ss_pred             eeeeecccccceEEEEecCCcEEEEEECCCCCeEEEeccCCeEEe
Q psy12697        556 VKSFEGHTTGQLVHSYKGTGGIFEVCWNSRGDKVGASASDGSVFK  600 (602)
Q Consensus       556 ~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~v~i  600 (602)
                      +..|+.-..         ...|.+++|+||+++|++.++.++|+|
T Consensus       209 l~eFRRG~~---------~~~IySL~Fs~ds~~L~~sS~TeTVHi  244 (391)
T KOG2110|consen  209 LYEFRRGTY---------PVSIYSLSFSPDSQFLAASSNTETVHI  244 (391)
T ss_pred             eeeeeCCce---------eeEEEEEEECCCCCeEEEecCCCeEEE
Confidence            877753321         245899999999999999999999987

>KOG0290|consensus

Probab=99.81  E-value=2.7e-17  Score=138.95  Aligned_cols=209  Identities=24%  Similarity=0.461  Sum_probs=157.6

Q ss_pred             eCCCcceEEEEEcCCCC-----EEEEeeCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEeeCC-CC
Q psy12697        219 IGHESEVFICAWNPVKD-----FLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNN-NG  292 (602)
Q Consensus       219 ~~h~~~v~~~~~~~~~~-----~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~  292 (602)
                      ..|..+++.+.|.|+..     +||+++  -.+|+|.+........  ....+     .......+..+++++.|+. +-
T Consensus        93 fd~~YP~tK~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~--~~~~L-----~~~kns~~~aPlTSFDWne~dp  163 (364)
T KOG0290|consen   93 FDHPYPVTKLMWIPDSKGVYPDLLATSS--DFLRLWRIGDEESRVE--LQSVL-----NNNKNSEFCAPLTSFDWNEVDP  163 (364)
T ss_pred             CCCCCCccceEecCCccccCcchhhccc--CeEEEEeccCcCCcee--hhhhh-----ccCcccccCCcccccccccCCc
Confidence            35889999999999863     455543  4799999975432111  11111     1111233467899999998 77


Q ss_pred             CeEEEEeCCCeEEEEcCCCc----ceeecccccCCeEEEEEccCC-CEEEEEecCCcEEEEeCCCCceeEEe---eeccC
Q psy12697        293 SFLATGSYDGYARIWTSDGS----LKSTLGQHKGPIFALKWNKRG-NYILSAGVDKTTIIWDAASGQCEQQF---SFHSA  364 (602)
Q Consensus       293 ~~l~~~~~dg~i~i~~~~~~----~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~~wd~~~~~~~~~~---~~~~~  364 (602)
                      +++.+.+-|-+..+||++..    ....+..|..+|..++|...+ +.+++.+.||+++++|++..+-...+   .....
T Consensus       164 ~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~  243 (364)
T KOG0290|consen  164 NLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPST  243 (364)
T ss_pred             ceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCC
Confidence            88999999999999998743    466788999999999999865 56889999999999999986544333   22255


Q ss_pred             CeeeeeccCCC--eEEEee-CCCeEEEEEcCCC-ceeeEeccCCCCeEEEEECC-CCCEEEEEECCCeEEEEeCCCC
Q psy12697        365 PALDVDWQSNT--SFASCS-TDQHIHVCKLHSD-KPVKSFEGHTNEVNAIKWDP-QGLLLASCSDDMTLKIWSLDKD  436 (602)
Q Consensus       365 ~~~~~~~~~~~--~~~~~~-~~~~i~i~d~~~~-~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~  436 (602)
                      +...++|++..  .+++.. ....|.+.|++.. .++..+++|...|+.++|.| ....|+++++|..+-+||+...
T Consensus       244 pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~  320 (364)
T KOG0290|consen  244 PLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQM  320 (364)
T ss_pred             cceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccc
Confidence            78888888763  345444 4467999999864 68899999999999999999 5578999999999999999753

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.80  E-value=6.8e-16  Score=146.34  Aligned_cols=317  Identities=15%  Similarity=0.148  Sum_probs=203.5

Q ss_pred             ccceeeeecccceeeeeeeccCCceEEEEECCCCCeEEEeeCCceEEEEecCCceeEEEeeccCceEEEEeCCCCCCCCC
Q psy12697        119 RLTLPLWDVERGECLNTLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKGTGGIFEVCWNSRGTPPNP  198 (602)
Q Consensus       119 ~~~i~vwd~~~~~~~~~l~~h~~~V~~~~~s~d~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (602)
                      .++|.|.|..+.+.+.++......-..+.|+|||+++.+++.||.|.++|+.+++.+.+++.                  
T Consensus        15 ~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~------------------   76 (369)
T PF02239_consen   15 SGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKV------------------   76 (369)
T ss_dssp             GTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-------------------
T ss_pred             CCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEec------------------
Confidence            57899999999999999987655545578999999999999999999999999998877653                  


Q ss_pred             CCCccccccccccCCcceEeeCCCcceEEEEEcCCCCEEEEee-CCCcEEEEeCCCCCCCCCccceEEEEEEecCCCccc
Q psy12697        199 PESMEVDASIEIPQSKATKLIGHESEVFICAWNPVKDFLASGS-GDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEV  277 (602)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~s~~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (602)
                                             ......+++++||++++++. ..+.+.++|.++.+.........     ...    .
T Consensus        77 -----------------------G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~-----~~~----~  124 (369)
T PF02239_consen   77 -----------------------GGNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGG-----MPV----D  124 (369)
T ss_dssp             -----------------------SSEEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--E-----E-T----T
T ss_pred             -----------------------CCCcceEEEcCCCCEEEEEecCCCceeEeccccccceeeccccc-----ccc----c
Confidence                                   23456789999999988775 58999999998765432211110     000    0


Q ss_pred             CCCCceeEEeeCCCCCeEEEEeC-CCeEEEEcCCCc--ceeecccccCCeEEEEEccCCCEEEEE-ecCCcEEEEeCCCC
Q psy12697        278 PSNKDVTSLDWNNNGSFLATGSY-DGYARIWTSDGS--LKSTLGQHKGPIFALKWNKRGNYILSA-GVDKTTIIWDAASG  353 (602)
Q Consensus       278 ~~~~~i~~~~~~~~~~~l~~~~~-dg~i~i~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~~wd~~~~  353 (602)
                      .....+.++..+|....+++.-. .+.|.+.|....  ................|+|++++++++ ..+..+.++|.+++
T Consensus       125 ~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~  204 (369)
T PF02239_consen  125 GPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTG  204 (369)
T ss_dssp             TS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTT
T ss_pred             ccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeecccccccccccCcccceeeecccccceeEEEeeccc
Confidence            02456788888888886665555 488888886532  222333345567789999999988765 55778999999998


Q ss_pred             ceeEEeee----ccCCeeeee-------ccCC--Ce-EEEeeCCCeEEEEEcCCCceeeEeccCCCCeEEEEECCCCCEE
Q psy12697        354 QCEQQFSF----HSAPALDVD-------WQSN--TS-FASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLL  419 (602)
Q Consensus       354 ~~~~~~~~----~~~~~~~~~-------~~~~--~~-~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l  419 (602)
                      +....+..    +..+...+-       |...  +. .++.-....+.+||..+.+.++++...... ..+..+|+++++
T Consensus       205 k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi~thP~s~~v  283 (369)
T PF02239_consen  205 KLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-LFIKTHPDSRYV  283 (369)
T ss_dssp             EEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS---EE--TT-SEE
T ss_pred             eEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEECCCCc-ceeecCCCCccE
Confidence            87766543    222222221       2111  11 222233345557888888999999877666 788899999999


Q ss_pred             EEE----ECCCeEEEEeCCCCeeeEeeccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEE
Q psy12697        420 ASC----SDDMTLKIWSLDKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYI  495 (602)
Q Consensus       420 ~~~----~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l  495 (602)
                      .+.    ...+.|.++|.++.+.+.++.....                                 ..+..+.|++||+++
T Consensus       284 wvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~---------------------------------~~~~h~ef~~dG~~v  330 (369)
T PF02239_consen  284 WVDTFLNPDADTVQVIDKKTLKVVKTITPGPG---------------------------------KRVVHMEFNPDGKEV  330 (369)
T ss_dssp             EEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT-----------------------------------EEEEEE-TTSSEE
T ss_pred             EeeccCCCCCceEEEEECcCcceeEEEeccCC---------------------------------CcEeccEECCCCCEE
Confidence            998    4458899999999877776643211                                 235667777788866


Q ss_pred             EEEeC--CCeEEEEeCCCCceeeeec
Q psy12697        496 LSAGV--DKTTIIWDAASGQCEQQFS  519 (602)
Q Consensus       496 ~s~~~--dg~i~iwd~~~~~~~~~~~  519 (602)
                      ..+..  ++.|.+||..+.+.+..+.
T Consensus       331 ~vS~~~~~~~i~v~D~~Tl~~~~~i~  356 (369)
T PF02239_consen  331 WVSVWDGNGAIVVYDAKTLKEKKRIP  356 (369)
T ss_dssp             EEEEE--TTEEEEEETTTTEEEEEEE
T ss_pred             EEEEecCCCEEEEEECCCcEEEEEEE
Confidence            65444  3479999999999988876

...

>KOG0644|consensus

Probab=99.80  E-value=2.5e-19  Score=171.97  Aligned_cols=273  Identities=21%  Similarity=0.314  Sum_probs=203.6

Q ss_pred             ceeecccccCCeEEEEEccCCCEEEEEecCCcEEEEeCCCCceeEEeeeccCCeeeeeccCCCe-EEEeeCCCeEEEEEc
Q psy12697        313 LKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTS-FASCSTDQHIHVCKL  391 (602)
Q Consensus       313 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~i~d~  391 (602)
                      .+..+.+|...|.|+.|...|.++++|+.|..++||.+.++.++....+|...+..++.+.++. +++++.|..|++|.+
T Consensus       182 ~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl  261 (1113)
T KOG0644|consen  182 NIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRL  261 (1113)
T ss_pred             HHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEec
Confidence            4456678999999999999999999999999999999999999999999999999999887755 778889999999999


Q ss_pred             CCCceeeEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeeeEeec----c-ccccEEEEEECCCCCCCCCCCc
Q psy12697        392 HSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHDLQ----A-HNKEIYTIKWSPTGPETSNPNM  466 (602)
Q Consensus       392 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~----~-~~~~i~~~~~~~~~~~~~~~~~  466 (602)
                      ..+.++..+.+|.+.|++++|+|-.    +.+.||++++||.+- ..+....    . ....+.++.|-..+.....+..
T Consensus       262 ~~~~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r~-~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~  336 (1113)
T KOG0644|consen  262 PDGAPVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARL-EPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSR  336 (1113)
T ss_pred             CCCchHHHHhccccceeeeccCccc----cCCCCCceEeccccc-cccccCCCCCCcccccceeeeeccccccccccccC
Confidence            9999999999999999999999964    778999999999872 1111110    0 0122223333322222111111


Q ss_pred             ceee--eeeeccCCccCCeEEEEEccC-CCEEEEEeCCCeEEEEeCCCCceeeeecccCCCeeEeeecCCc--eEEEeeC
Q psy12697        467 SLIF--ILKSTLGQHKGPIFALKWNKR-GNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNT--SFASCST  541 (602)
Q Consensus       467 ~~~~--~~~~~~~~~~~~v~~i~~s~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~--~l~~~~~  541 (602)
                      ....  .-...+..+...+.-+.++.| ..+.+++-.+-.+.+|++.+|.+.+.+.+|...+..+.++|-+  ...+++.
T Consensus       337 d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~  416 (1113)
T KOG0644|consen  337 DGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMSAGY  416 (1113)
T ss_pred             CcccccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhhhccC
Confidence            1100  000011112222222223322 2456667778889999999999999999999999999999988  5568999


Q ss_pred             CCcEEEeecCCCCceeeeecccccceEEEEecCCcEEEEEECCCCCeEEEeccCCeEEee
Q psy12697        542 DQHIHVCKLHSDKPVKSFEGHTTGQLVHSYKGTGGIFEVCWNSRGDKVGASASDGSVFKN  601 (602)
Q Consensus       542 d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~v~i~  601 (602)
                      ||...|||+-.+.+++...           .+++.+..-+||+||..++...+-|.++|.
T Consensus       417 dgst~iwdi~eg~pik~y~-----------~gh~kl~d~kFSqdgts~~lsd~hgql~i~  465 (1113)
T KOG0644|consen  417 DGSTIIWDIWEGIPIKHYF-----------IGHGKLVDGKFSQDGTSIALSDDHGQLYIL  465 (1113)
T ss_pred             CCceEeeecccCCcceeee-----------cccceeeccccCCCCceEecCCCCCceEEe
Confidence            9999999998887776554           124678888999999999988888887763

>KOG1523|consensus

Probab=99.80  E-value=5.7e-17  Score=139.06  Aligned_cols=250  Identities=19%  Similarity=0.299  Sum_probs=180.9

Q ss_pred             eeccCCceEEEEECCCCCeEEEeeCCceEEEEecCCceeEEEeeccCceEEEEeCCCCCCCCCCCCccccccccccCCcc
Q psy12697        136 LTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKGTGGIFEVCWNSRGTPPNPPESMEVDASIEIPQSKA  215 (602)
Q Consensus       136 l~~h~~~V~~~~~s~d~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  215 (602)
                      +.---.+|+|.+|++|++.+|.+-....|.||.....++-.                                     ..
T Consensus         6 ~~~~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~-------------------------------------~~   48 (361)
T KOG1523|consen    6 FHRLLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWE-------------------------------------PA   48 (361)
T ss_pred             eeeccCceeeeeecCCCceEEeccCCceEEEEEecCCCCce-------------------------------------ec
Confidence            33345789999999999999999999999999876655221                                     12


Q ss_pred             eEeeCCCcceEEEEEcCCCCEEEEeeCCCcEEEEeCC-CCCCCCCccceEEEEEEecCCCcccCCCCceeEEeeCCCCCe
Q psy12697        216 TKLIGHESEVFICAWNPVKDFLASGSGDSTARIWDMT-DSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSF  294 (602)
Q Consensus       216 ~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  294 (602)
                      .++..|...|+.+.|+|..+.|++++.|..-.+|... .+.-....   .+++           ++...+++.|+|.++.
T Consensus        49 htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~~Wkptl---vLlR-----------iNrAAt~V~WsP~enk  114 (361)
T KOG1523|consen   49 HTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGTWKPTL---VLLR-----------INRAATCVKWSPKENK  114 (361)
T ss_pred             eehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCCeeccce---eEEE-----------eccceeeEeecCcCce
Confidence            5677899999999999999999999999999999984 33322221   1222           2678999999999999


Q ss_pred             EEEEeCCCeEEEEcCCCccee-----ecccccCCeEEEEEccCCCEEEEEecCCcEEEEeCCCCceeEEeeeccCCeeee
Q psy12697        295 LATGSYDGYARIWTSDGSLKS-----TLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDV  369 (602)
Q Consensus       295 l~~~~~dg~i~i~~~~~~~~~-----~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~  369 (602)
                      ||+|+.-..|.+|-.+++.--     .-..+.+.|.++.|+|++-.|++|+.|+..+++...-    +.......+   -
T Consensus       115 FAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~D~k~rVfSayI----K~Vdekpap---~  187 (361)
T KOG1523|consen  115 FAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYI----KGVDEKPAP---T  187 (361)
T ss_pred             EEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecccccCcceeEEEEee----eccccCCCC---C
Confidence            999999999999987755433     3445678899999999999999999999999986431    111111100   0


Q ss_pred             eccCCCeEEEeeCCCeEEEEEcCCCceeeEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCe-eeEeecccccc
Q psy12697        370 DWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDN-CVHDLQAHNKE  448 (602)
Q Consensus       370 ~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~  448 (602)
                      -|...                +.-++.+.++....+.+..+.|+|+|..|+-.+.|..+.+-|..... .+.......-+
T Consensus       188 pWgsk----------------~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~~~v~~~~~~~lP  251 (361)
T KOG1523|consen  188 PWGSK----------------MPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPSERVQSVATAQLP  251 (361)
T ss_pred             CCccC----------------CcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCchhccchhhccCC
Confidence            00000                01123334444456789999999999999999999999999977654 34444444456


Q ss_pred             EEEEEECCCCC
Q psy12697        449 IYTIKWSPTGP  459 (602)
Q Consensus       449 i~~~~~~~~~~  459 (602)
                      ..++.|-.+..
T Consensus       252 ~ls~~~ise~~  262 (361)
T KOG1523|consen  252 LLSVSWISENS  262 (361)
T ss_pred             ceeeEeecCCc
Confidence            66666655443

>KOG0303|consensus

Probab=99.80  E-value=4.3e-18  Score=149.78  Aligned_cols=232  Identities=22%  Similarity=0.386  Sum_probs=171.1

Q ss_pred             eeeeeccCCceEEEEECC-CCCeEEEeeCCceEEEEecCCceeEEEeeccCceEEEEeCCCCCCCCCCCCcccccccccc
Q psy12697        133 LNTLTRHTEPVYSVAFSP-DGKFLASGSFDKCVHIWSARTGQLVHSYKGTGGIFEVCWNSRGTPPNPPESMEVDASIEIP  211 (602)
Q Consensus       133 ~~~l~~h~~~V~~~~~s~-d~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (602)
                      ...+.||+++|..++|+| +...|||||.|.+|.||.+..+.+...+.                                
T Consensus        74 ~P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~lt--------------------------------  121 (472)
T KOG0303|consen   74 YPLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLT--------------------------------  121 (472)
T ss_pred             CCCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcc--------------------------------
Confidence            345689999999999999 67789999999999999997765543321                                


Q ss_pred             CCcceEeeCCCcceEEEEEcCCC-CEEEEeeCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEeeCC
Q psy12697        212 QSKATKLIGHESEVFICAWNPVK-DFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNN  290 (602)
Q Consensus       212 ~~~~~~l~~h~~~v~~~~~~~~~-~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  290 (602)
                       .....|.||...|-.++|+|.- +.|++++.|.+|.+|++.+++....                 ..|...|.++.|+.
T Consensus       122 -epvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tgeali~-----------------l~hpd~i~S~sfn~  183 (472)
T KOG0303|consen  122 -EPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEALIT-----------------LDHPDMVYSMSFNR  183 (472)
T ss_pred             -cceEEEeecceeEEEEeecccchhhHhhccCCceEEEEeccCCceeee-----------------cCCCCeEEEEEecc
Confidence             3347789999999999999975 7899999999999999999875311                 22678999999999


Q ss_pred             CCCeEEEEeCCCeEEEEcCC-CcceeecccccCC-eEEEEEccCCCEEEEEe----cCCcEEEEeCCCCceeEEe-ee-c
Q psy12697        291 NGSFLATGSYDGYARIWTSD-GSLKSTLGQHKGP-IFALKWNKRGNYILSAG----VDKTTIIWDAASGQCEQQF-SF-H  362 (602)
Q Consensus       291 ~~~~l~~~~~dg~i~i~~~~-~~~~~~~~~~~~~-i~~~~~~~~~~~l~~~~----~dg~i~~wd~~~~~~~~~~-~~-~  362 (602)
                      +|.+|++.+.|..|++||.+ +..+..-..|.+. -..+.|..++. +++.+    .+..+-+||..+.+....+ .. .
T Consensus       184 dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~-i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDt  262 (472)
T KOG0303|consen  184 DGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGK-IFTTGFSRMSERQIALWDPNNLEEPIALQELDT  262 (472)
T ss_pred             CCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCc-eeeeccccccccceeccCcccccCcceeEEecc
Confidence            99999999999999999987 5555555566653 44566778888 54443    4678999998765433222 22 2


Q ss_pred             cCCeeeeeccCCCe--EEEeeCCCeEEEEEcCCCceee-Eecc--CCCCeEEEEECCC
Q psy12697        363 SAPALDVDWQSNTS--FASCSTDQHIHVCKLHSDKPVK-SFEG--HTNEVNAIKWDPQ  415 (602)
Q Consensus       363 ~~~~~~~~~~~~~~--~~~~~~~~~i~i~d~~~~~~~~-~~~~--~~~~i~~~~~~~~  415 (602)
                      +..+.---|.++..  +++|-.|+.|+.|.+.+..+.. .+..  ...+-..+.|-|.
T Consensus       263 SnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~P~~hyln~f~S~epQRG~g~mPK  320 (472)
T KOG0303|consen  263 SNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEPPFVHYLNTFSSKEPQRGMGFMPK  320 (472)
T ss_pred             CCceEEeeecCCCCEEEEEecCCcceEEEEecCCCceeEEecccccCCcccccccccc
Confidence            23444445566643  6677889999999998876532 2221  1233455666664

>KOG1517|consensus

Probab=99.80  E-value=3.5e-17  Score=161.53  Aligned_cols=304  Identities=17%  Similarity=0.238  Sum_probs=210.1

Q ss_pred             CCceEEEEECCCCCeEEEeeCCceEEEEecCCceeEEEeeccCceEEEEeCCCCCCCCCCCCccccccccccCCcceEee
Q psy12697        140 TEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKGTGGIFEVCWNSRGTPPNPPESMEVDASIEIPQSKATKLI  219 (602)
Q Consensus       140 ~~~V~~~~~s~d~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  219 (602)
                      ..+-..+.|+|-...++++...-+|+|||.+.++.+..|....                                     
T Consensus      1064 ~~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~------------------------------------- 1106 (1387)
T KOG1517|consen 1064 NQPPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGA------------------------------------- 1106 (1387)
T ss_pred             CCCCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCC-------------------------------------
Confidence            3356678899988899999988999999999999987765421                                     


Q ss_pred             CCCcceEEEEEcC--CCCEEEEeeCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEeeCCCCCeEEE
Q psy12697        220 GHESEVFICAWNP--VKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFLAT  297 (602)
Q Consensus       220 ~h~~~v~~~~~~~--~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~  297 (602)
                      .....|+.+.+-.  |..++++|+.||.|+||+--......   ..................... .-++|.....+|++
T Consensus      1107 ~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~---~eLVTaw~~Ls~~~~~~r~~~-~v~dWqQ~~G~Ll~ 1182 (1387)
T KOG1517|consen 1107 FPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKK---PELVTAWSSLSDQLPGARGTG-LVVDWQQQSGHLLV 1182 (1387)
T ss_pred             CCCCccceeeeecccchhheeeeccCceEEEecccccccCC---ceeEEeeccccccCccCCCCC-eeeehhhhCCeEEe
Confidence            1344577777754  34789999999999999754332111   111111100001111111122 45678887667777


Q ss_pred             EeCCCeEEEEcCCCccee-ec-ccccCCeEEEEEc-cCCCEEEEEecCCcEEEEeCCCCc---eeEEeeeccCC--eeee
Q psy12697        298 GSYDGYARIWTSDGSLKS-TL-GQHKGPIFALKWN-KRGNYILSAGVDKTTIIWDAASGQ---CEQQFSFHSAP--ALDV  369 (602)
Q Consensus       298 ~~~dg~i~i~~~~~~~~~-~~-~~~~~~i~~~~~~-~~~~~l~~~~~dg~i~~wd~~~~~---~~~~~~~~~~~--~~~~  369 (602)
                      ++.-..|+|||...+.+. .+ .+....|+++.-+ ..|+.+++|..||.|++||.+...   .+..++.|...  |..+
T Consensus      1183 tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~ 1262 (1387)
T KOG1517|consen 1183 TGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHL 1262 (1387)
T ss_pred             cCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeE
Confidence            777899999998754432 22 2344456666543 347899999999999999988653   34556666666  8888


Q ss_pred             eccCC--CeEEEeeCCCeEEEEEcCCCce--eeEeccCC--C-CeEEEEECCCCCEEEEEECCCeEEEEeCCCCeeeEee
Q psy12697        370 DWQSN--TSFASCSTDQHIHVCKLHSDKP--VKSFEGHT--N-EVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHDL  442 (602)
Q Consensus       370 ~~~~~--~~~~~~~~~~~i~i~d~~~~~~--~~~~~~~~--~-~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~  442 (602)
                      .+.++  +.+++|+.+|.|++||++....  ..++..|-  + ..+++..+++...+|+|+. +.|+||++.. +.+..+
T Consensus      1263 slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G-~~l~~~ 1340 (1387)
T KOG1517|consen 1263 SLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSG-EQLNII 1340 (1387)
T ss_pred             EeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecCh-hhhccc
Confidence            88775  4599999999999999987422  22233332  3 5999999999999999998 9999999863 444444


Q ss_pred             ccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCc
Q psy12697        443 QAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQ  513 (602)
Q Consensus       443 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~~~~~  513 (602)
                      +.+..                           -+....+.+.|++|+|..-++|+|+.|..|.||..+.++
T Consensus      1341 k~n~~---------------------------F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1341 KYNPG---------------------------FMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred             ccCcc---------------------------cccCcCCCcceeeecchhHhhhhccCCceEEEeecCCcC
Confidence            32211                           122245667899999999999999999999999877554

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.79  E-value=3.6e-16  Score=149.38  Aligned_cols=273  Identities=10%  Similarity=0.163  Sum_probs=172.0

Q ss_pred             EEeeCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEeeCCCCCeEEEEe-CCCeEEEEcCCCc-cee
Q psy12697        238 ASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFLATGS-YDGYARIWTSDGS-LKS  315 (602)
Q Consensus       238 ~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~~~~~~-~~~  315 (602)
                      ++...++.|.+|++.+.....  ...    .        .+.......++++|++++|++++ .++.|.+|+++.. ...
T Consensus         6 ~~~~~~~~I~~~~~~~~g~l~--~~~----~--------~~~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~   71 (330)
T PRK11028          6 IASPESQQIHVWNLNHEGALT--LLQ----V--------VDVPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALT   71 (330)
T ss_pred             EEcCCCCCEEEEEECCCCcee--eee----E--------EecCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceE
Confidence            444678999999996432110  001    0        01124567889999999987765 4788999987621 111


Q ss_pred             ec--ccccCCeEEEEEccCCCEEEEEec-CCcEEEEeCCC-Cce---eEEeeeccCCeeeeeccCCCe-E-EEeeCCCeE
Q psy12697        316 TL--GQHKGPIFALKWNKRGNYILSAGV-DKTTIIWDAAS-GQC---EQQFSFHSAPALDVDWQSNTS-F-ASCSTDQHI  386 (602)
Q Consensus       316 ~~--~~~~~~i~~~~~~~~~~~l~~~~~-dg~i~~wd~~~-~~~---~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~i  386 (602)
                      ..  ....+....++|+|+++++++++. ++.+.+|++.+ +..   ...+. .......+.++|++. + ++...++.|
T Consensus        72 ~~~~~~~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~~~~v  150 (330)
T PRK11028         72 FAAESPLPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDNRTLWVPCLKEDRI  150 (330)
T ss_pred             EeeeecCCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCCCCCEEEEeeCCCCEE
Confidence            11  123345678999999999988764 78999999864 322   22221 223456677888764 3 445567999


Q ss_pred             EEEEcCCCceeeE-----ec-cCCCCeEEEEECCCCCEEEEEEC-CCeEEEEeCCCC-eeeEeeccccccEEEEEECCCC
Q psy12697        387 HVCKLHSDKPVKS-----FE-GHTNEVNAIKWDPQGLLLASCSD-DMTLKIWSLDKD-NCVHDLQAHNKEIYTIKWSPTG  458 (602)
Q Consensus       387 ~i~d~~~~~~~~~-----~~-~~~~~i~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~-~~~~~~~~~~~~i~~~~~~~~~  458 (602)
                      .+||+.+...+..     .. ........++|+|+|++++++.. ++.|.+|+++.. ..+...       ..+...|..
T Consensus       151 ~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~-------~~~~~~p~~  223 (330)
T PRK11028        151 RLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECV-------QTLDMMPAD  223 (330)
T ss_pred             EEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEE-------EEEecCCCc
Confidence            9999976432211     11 12334678999999999988876 899999999742 111111       111111110


Q ss_pred             CCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeC-CCeEEEEeCCCCce----eeeecccCCCeeEeeecCC
Q psy12697        459 PETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGV-DKTTIIWDAASGQC----EQQFSFHSAPALDVDWQSN  533 (602)
Q Consensus       459 ~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~-dg~i~iwd~~~~~~----~~~~~~~~~~v~~~~~s~~  533 (602)
                                       . .+......+.++|+|++++++.. ++.|.+|++.....    +..... ......+.++||
T Consensus       224 -----------------~-~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~-~~~p~~~~~~~d  284 (330)
T PRK11028        224 -----------------F-SDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPT-ETQPRGFNIDHS  284 (330)
T ss_pred             -----------------C-CCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEec-cccCCceEECCC
Confidence                             0 01123346889999999998854 78999999865432    222221 124557899999


Q ss_pred             c-eEEEee-CCCcEEEeecC
Q psy12697        534 T-SFASCS-TDQHIHVCKLH  551 (602)
Q Consensus       534 ~-~l~~~~-~d~~i~iw~~~  551 (602)
                      | +|+++. .+++|.+|+++
T Consensus       285 g~~l~va~~~~~~v~v~~~~  304 (330)
T PRK11028        285 GKYLIAAGQKSHHISVYEID  304 (330)
T ss_pred             CCEEEEEEccCCcEEEEEEc
Confidence            9 776665 48999999875

>KOG2110|consensus

Probab=99.79  E-value=6.4e-16  Score=135.38  Aligned_cols=238  Identities=13%  Similarity=0.214  Sum_probs=173.0

Q ss_pred             CcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEeeCCCCCeEEEEeCC
Q psy12697        222 ESEVFICAWNPVKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFLATGSYD  301 (602)
Q Consensus       222 ~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d  301 (602)
                      ...+..+.|+.+...|..|+.|| .++++.+....-.                ........|.-+-|+..  ++|..+.+
T Consensus         5 ~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~----------------~~~~~~~~IvEmLFSSS--LvaiV~~~   65 (391)
T KOG2110|consen    5 KPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCF----------------SKDTEGVSIVEMLFSSS--LVAIVSIK   65 (391)
T ss_pred             CcceeeeeeccceeEEEccCCCc-eeEEecCchHHhh----------------cccCCCeEEEEeecccc--eeEEEecC
Confidence            34566777999999999999988 4777765443210                00111234555666654  55555443


Q ss_pred             --CeEEEEcCCCcceeecccccCCeEEEEEccCCCEEEEEecCCcEEEEeCCCCceeEEeeec---cCCeeeeeccCCCe
Q psy12697        302 --GYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFH---SAPALDVDWQSNTS  376 (602)
Q Consensus       302 --g~i~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~---~~~~~~~~~~~~~~  376 (602)
                        ..+++++.+.....--.....+|.++.++.  ++|+++-.+ .|.|||+++.+.+.++...   ...+.++..+.++.
T Consensus        66 qpr~Lkv~~~Kk~~~ICe~~fpt~IL~VrmNr--~RLvV~Lee-~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~  142 (391)
T KOG2110|consen   66 QPRKLKVVHFKKKTTICEIFFPTSILAVRMNR--KRLVVCLEE-SIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANC  142 (391)
T ss_pred             CCceEEEEEcccCceEEEEecCCceEEEEEcc--ceEEEEEcc-cEEEEecccceeehhhhccCCCccceEeeccCCCCc
Confidence              458888866433222223456788888874  456666554 4999999999999887654   33355555555544


Q ss_pred             EEE---eeCCCeEEEEEcCCCceeeEeccCCCCeEEEEECCCCCEEEEEECCCe-EEEEeCCCCeeeEeeccccccEEEE
Q psy12697        377 FAS---CSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMT-LKIWSLDKDNCVHDLQAHNKEIYTI  452 (602)
Q Consensus       377 ~~~---~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~-i~iwd~~~~~~~~~~~~~~~~i~~~  452 (602)
                      +++   ....|.|.+||..+-+++..+..|.+.+.+++|+++|.+||++|+.|+ |||+.+.+++.+.+++....     
T Consensus       143 ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~-----  217 (391)
T KOG2110|consen  143 YLAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTY-----  217 (391)
T ss_pred             eEEecCCCCCceEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCce-----
Confidence            433   335689999999999999999999999999999999999999999997 89999999999988864322     


Q ss_pred             EECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCc
Q psy12697        453 KWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQ  513 (602)
Q Consensus       453 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~~~~~  513 (602)
                                                 ...|.+++|+|++++|++.+..++|.+|.++...
T Consensus       218 ---------------------------~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~~  251 (391)
T KOG2110|consen  218 ---------------------------PVSIYSLSFSPDSQFLAASSNTETVHIFKLEKVS  251 (391)
T ss_pred             ---------------------------eeEEEEEEECCCCCeEEEecCCCeEEEEEecccc
Confidence                                       2356788899999999999999999999987544

>KOG1334|consensus

Probab=99.78  E-value=1.5e-18  Score=156.90  Aligned_cols=296  Identities=18%  Similarity=0.283  Sum_probs=221.5

Q ss_pred             eeeeeeeccCCceEEEEECCCCCeEEEeeCCceEEEEecCCceeEEEeeccCceEEEEeCCCCCCCCCCCCccccccccc
Q psy12697        131 ECLNTLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKGTGGIFEVCWNSRGTPPNPPESMEVDASIEI  210 (602)
Q Consensus       131 ~~~~~l~~h~~~V~~~~~s~d~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (602)
                      .....|..|.+.|..+.|...|..|++|+.|..|.+||+.++.....|.                               
T Consensus       133 ~l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~-------------------------------  181 (559)
T KOG1334|consen  133 RLQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFE-------------------------------  181 (559)
T ss_pred             hhhhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccc-------------------------------
Confidence            4456788999999999999999999999999999999999988765543                               


Q ss_pred             cCCcceEeeCCCcceEEEEEcCC--CCEEEEeeCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEee
Q psy12697        211 PQSKATKLIGHESEVFICAWNPV--KDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDW  288 (602)
Q Consensus       211 ~~~~~~~l~~h~~~v~~~~~~~~--~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  288 (602)
                              .||...|....|-|.  ...+++++.||.+++=.+.......             ......+|.++|..++.
T Consensus       182 --------SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t~~~e-------------~t~rl~~h~g~vhklav  240 (559)
T KOG1334|consen  182 --------SGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILETGYVE-------------NTKRLAPHEGPVHKLAV  240 (559)
T ss_pred             --------cccccchhhhhccCCCCCcCceeccccCceeeeeecccccee-------------cceecccccCccceeee
Confidence                    479999999999985  3789999999999998765443321             11133456889999999


Q ss_pred             CCCC-CeEEEEeCCCeEEEEcCCCc----ceeecccccC---CeEEEEEccCCC-EEEEEecCCcEEEEeCCCCcee---
Q psy12697        289 NNNG-SFLATGSYDGYARIWTSDGS----LKSTLGQHKG---PIFALKWNKRGN-YILSAGVDKTTIIWDAASGQCE---  356 (602)
Q Consensus       289 ~~~~-~~l~~~~~dg~i~i~~~~~~----~~~~~~~~~~---~i~~~~~~~~~~-~l~~~~~dg~i~~wd~~~~~~~---  356 (602)
                      -|+. .-|.+++.|+.+.-+|+...    .......+..   ....++..|... .+++++.|..+++||.+.-...   
T Consensus       241 ~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n  320 (559)
T KOG1334|consen  241 EPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENN  320 (559)
T ss_pred             cCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhcccc
Confidence            9965 56889999999999987632    1222222333   467888888654 7899999999999998754322   


Q ss_pred             ---EEee------eccCCeeeeecc-CCCeEEEeeCCCeEEEEEcCC--C----------ceeeE-eccCCCC--eEEEE
Q psy12697        357 ---QQFS------FHSAPALDVDWQ-SNTSFASCSTDQHIHVCKLHS--D----------KPVKS-FEGHTNE--VNAIK  411 (602)
Q Consensus       357 ---~~~~------~~~~~~~~~~~~-~~~~~~~~~~~~~i~i~d~~~--~----------~~~~~-~~~~~~~--i~~~~  411 (602)
                         ..+.      .....|++++|+ ..+.+++...|-.|+++.-.-  +          ..+.. +++|.+.  |..+-
T Consensus       321 ~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVN  400 (559)
T KOG1334|consen  321 GVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVN  400 (559)
T ss_pred             chhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCCCCCCCcchhhccchhhcccccccccceee
Confidence               2221      233468899999 557788889999999995432  2          22233 7788753  66665


Q ss_pred             -ECCCCCEEEEEECCCeEEEEeCCCCeeeEeeccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEcc
Q psy12697        412 -WDPQGLLLASCSDDMTLKIWSLDKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNK  490 (602)
Q Consensus       412 -~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~  490 (602)
                       |-|...++++|++-|.|.||+-.+++.++.+.+...-|.|+.-+|                                  
T Consensus       401 FfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP----------------------------------  446 (559)
T KOG1334|consen  401 FFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHP----------------------------------  446 (559)
T ss_pred             eccCccceEEecCccceEEEEecchhHHHHHhhcccceEeccCCCC----------------------------------
Confidence             467889999999999999999999988888777655555555444                                  


Q ss_pred             CCCEEEEEeCCCeEEEEeCCCC
Q psy12697        491 RGNYILSAGVDKTTIIWDAASG  512 (602)
Q Consensus       491 ~~~~l~s~~~dg~i~iwd~~~~  512 (602)
                      --..||++|-|..|+||-..+.
T Consensus       447 ~~PvLAsSGid~DVKIWTP~~~  468 (559)
T KOG1334|consen  447 HLPVLASSGIDHDVKIWTPLTA  468 (559)
T ss_pred             CCchhhccCCccceeeecCCcc
Confidence            4457999999999999987443

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.78  E-value=1.1e-15  Score=146.12  Aligned_cols=262  Identities=17%  Similarity=0.249  Sum_probs=171.5

Q ss_pred             ccceeeeeccc-ce--eeeeeeccCCceEEEEECCCCCeEEEee-CCceEEEEecCC-ceeEEEeeccCceEEEEeCCCC
Q psy12697        119 RLTLPLWDVER-GE--CLNTLTRHTEPVYSVAFSPDGKFLASGS-FDKCVHIWSART-GQLVHSYKGTGGIFEVCWNSRG  193 (602)
Q Consensus       119 ~~~i~vwd~~~-~~--~~~~l~~h~~~V~~~~~s~d~~~l~s~~-~d~~v~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~  193 (602)
                      ++.|.+||+.+ ++  .++++. +.+....++++||+++|++++ .++.|.+|++.. ++.. ...              
T Consensus        11 ~~~I~~~~~~~~g~l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~-~~~--------------   74 (330)
T PRK11028         11 SQQIHVWNLNHEGALTLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALT-FAA--------------   74 (330)
T ss_pred             CCCEEEEEECCCCceeeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceE-Eee--------------
Confidence            47899999964 33  455554 346678899999999987765 588999999863 3321 100              


Q ss_pred             CCCCCCCCccccccccccCCcceEeeCCCcceEEEEEcCCCCEEEEeeC-CCcEEEEeCCCCCCCCCccceEEEEEEecC
Q psy12697        194 TPPNPPESMEVDASIEIPQSKATKLIGHESEVFICAWNPVKDFLASGSG-DSTARIWDMTDSTKKDPKELQIVLRHCISK  272 (602)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~  272 (602)
                                             . .........++|+|++++|++++. ++.|.+|++++....... .. .       
T Consensus        75 -----------------------~-~~~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~-~~-~-------  121 (330)
T PRK11028         75 -----------------------E-SPLPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAP-IQ-I-------  121 (330)
T ss_pred             -----------------------e-ecCCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCc-ee-e-------
Confidence                                   0 011223567999999998888764 889999999743221110 00 0       


Q ss_pred             CCcccCCCCceeEEeeCCCCCeEEEEe-CCCeEEEEcCCC-ccee-------ecccccCCeEEEEEccCCCEEEEEec-C
Q psy12697        273 GGTEVPSNKDVTSLDWNNNGSFLATGS-YDGYARIWTSDG-SLKS-------TLGQHKGPIFALKWNKRGNYILSAGV-D  342 (602)
Q Consensus       273 ~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~~~~~-~~~~-------~~~~~~~~i~~~~~~~~~~~l~~~~~-d  342 (602)
                          .+......+++++|+++++++++ .++.|.+||++. ....       ... .......+.|+|++++++++.. +
T Consensus       122 ----~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~-~g~~p~~~~~~pdg~~lyv~~~~~  196 (330)
T PRK11028        122 ----IEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTV-EGAGPRHMVFHPNQQYAYCVNELN  196 (330)
T ss_pred             ----ccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecC-CCCCCceEEECCCCCEEEEEecCC
Confidence                01123467788999999886555 569999999863 2111       111 2234678999999999988876 8


Q ss_pred             CcEEEEeCCC--Cc--eeEEeeecc------CCeeeeeccCCCe-EEEee-CCCeEEEEEcCCCceeeEeccC---CCCe
Q psy12697        343 KTTIIWDAAS--GQ--CEQQFSFHS------APALDVDWQSNTS-FASCS-TDQHIHVCKLHSDKPVKSFEGH---TNEV  407 (602)
Q Consensus       343 g~i~~wd~~~--~~--~~~~~~~~~------~~~~~~~~~~~~~-~~~~~-~~~~i~i~d~~~~~~~~~~~~~---~~~i  407 (602)
                      +.|.+|++..  ++  ....+....      .....+.++|++. ++++. .++.|.+|++.......++.++   ....
T Consensus       197 ~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p  276 (330)
T PRK11028        197 SSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTETQP  276 (330)
T ss_pred             CEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEeccccC
Confidence            9999999973  32  233332211      1123577888876 44443 4689999998654322222222   1245


Q ss_pred             EEEEECCCCCEEEEEEC-CCeEEEEeCC
Q psy12697        408 NAIKWDPQGLLLASCSD-DMTLKIWSLD  434 (602)
Q Consensus       408 ~~~~~~~~~~~l~~~~~-dg~i~iwd~~  434 (602)
                      ..+.++|+|++|+++.. +++|.+|+++
T Consensus       277 ~~~~~~~dg~~l~va~~~~~~v~v~~~~  304 (330)
T PRK11028        277 RGFNIDHSGKYLIAAGQKSHHISVYEID  304 (330)
T ss_pred             CceEECCCCCEEEEEEccCCcEEEEEEc
Confidence            67899999999998876 8899999875

>KOG4497|consensus

Probab=99.78  E-value=3.5e-17  Score=140.72  Aligned_cols=338  Identities=16%  Similarity=0.277  Sum_probs=206.6

Q ss_pred             eccceeeeecccceeeeeeeccCCceEEEEECCCCCeE-EEeeCCceEEEEecCCceeEEEeeccCceEEEEeCCCCCCC
Q psy12697        118 HRLTLPLWDVERGECLNTLTRHTEPVYSVAFSPDGKFL-ASGSFDKCVHIWSARTGQLVHSYKGTGGIFEVCWNSRGTPP  196 (602)
Q Consensus       118 ~~~~i~vwd~~~~~~~~~l~~h~~~V~~~~~s~d~~~l-~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (602)
                      .++.|.+|++...+-...+....+++.+++|||||+.| .+..-|-.|.||.+.+.+....--...++...+|.++|+..
T Consensus        69 k~~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~pK~~~kg~~f~~dg~f~  148 (447)
T KOG4497|consen   69 KDPKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPHPKTNVKGYAFHPDGQFC  148 (447)
T ss_pred             ccceEEEEEeecceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEecccccCceeEEECCCCcee
Confidence            36789999999999999999999999999999999755 55667999999999988766544445566889999999887


Q ss_pred             CCCCCccccccccccCCcc----eEeeCCCcceEEEEEcCCCCEEEEeeC--CCcEEEEeCCCCCCCCCccceEEEEEEe
Q psy12697        197 NPPESMEVDASIEIPQSKA----TKLIGHESEVFICAWNPVKDFLASGSG--DSTARIWDMTDSTKKDPKELQIVLRHCI  270 (602)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~----~~l~~h~~~v~~~~~~~~~~~l~s~~~--dg~i~iw~~~~~~~~~~~~~~~~~~~~~  270 (602)
                      ......+-...+.+...+.    ..+.-.+-..+.+.|+|||+.|+.-..  +-.|..|..                   
T Consensus       149 ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe~-------------------  209 (447)
T KOG4497|consen  149 AILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYER-------------------  209 (447)
T ss_pred             eeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheeeeeee-------------------
Confidence            7665554433333322211    122234556778999999987775332  111111111                   


Q ss_pred             cCCCcccCCCCceeEEeeCCCCCeEEEEeCCCeEEEEcCCCcceeecccccCCeEEEEEccCCCEEEEEe-cCCcEEEEe
Q psy12697        271 SKGGTEVPSNKDVTSLDWNNNGSFLATGSYDGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAG-VDKTTIIWD  349 (602)
Q Consensus       271 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~~wd  349 (602)
                               .-.+..++|+|.++++++|+.|+.+++.+                 .+.|.|-++++--++ .|.+..+..
T Consensus       210 ---------~lG~k~v~wsP~~qflavGsyD~~lrvln-----------------h~tWk~f~eflhl~s~~dp~~~~~~  263 (447)
T KOG4497|consen  210 ---------GLGLKFVEWSPCNQFLAVGSYDQMLRVLN-----------------HFTWKPFGEFLHLCSYHDPTLHLLE  263 (447)
T ss_pred             ---------ccceeEEEeccccceEEeeccchhhhhhc-----------------eeeeeehhhhccchhccCchhhhhh
Confidence                     24588899999999999999999888754                 233444443332111 222222211


Q ss_pred             CCCCceeEEeeeccCCeeeeeccCCCeEEEeeCCCeEEEEE-------cCCCceeeEeccCCCCeEEEEECCCCCEEEEE
Q psy12697        350 AASGQCEQQFSFHSAPALDVDWQSNTSFASCSTDQHIHVCK-------LHSDKPVKSFEGHTNEVNAIKWDPQGLLLASC  422 (602)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d-------~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~  422 (602)
                      -++.+.++.      ...++.|.|.+.=+.-..... .+|.       +...++...+....-.+.-++|++|..++++-
T Consensus       264 ke~~~~~ql------~~~cLsf~p~~~~a~~~~~se-~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTr  336 (447)
T KOG4497|consen  264 KETFSIVQL------LHHCLSFTPTDLEAHIWEESE-TIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATR  336 (447)
T ss_pred             hhhcchhhh------cccccccCCCccccCccccch-hhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeee
Confidence            111111110      111222222211000000000 0011       11223333333444568889999999999887


Q ss_pred             ECC--CeEEEEeCCCCeeeEeeccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeC
Q psy12697        423 SDD--MTLKIWSLDKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGV  500 (602)
Q Consensus       423 ~~d--g~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~  500 (602)
                      .+.  +.+-+||++..+....+. ..                                  .+|....|.|....|+.+..
T Consensus       337 nd~~PnalW~Wdlq~l~l~avLi-Qk----------------------------------~piraf~WdP~~prL~vctg  381 (447)
T KOG4497|consen  337 NDKYPNALWLWDLQNLKLHAVLI-QK----------------------------------HPIRAFEWDPGRPRLVVCTG  381 (447)
T ss_pred             cCCCCceEEEEechhhhhhhhhh-hc----------------------------------cceeEEEeCCCCceEEEEcC
Confidence            553  679999998765443332 23                                  34445555555556777777


Q ss_pred             CCeEEEEeCCCCceeeeecccCCCeeEeeecCCc-eEEEeeCCC
Q psy12697        501 DKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNT-SFASCSTDQ  543 (602)
Q Consensus       501 dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~-~l~~~~~d~  543 (602)
                      ...+++|......++.. ....-.|.+++|.-+| .++.++.|.
T Consensus       382 ~srLY~W~psg~~~V~v-P~~GF~i~~l~W~~~g~~i~l~~kDa  424 (447)
T KOG4497|consen  382 KSRLYFWAPSGPRVVGV-PKKGFNIQKLQWLQPGEFIVLCGKDA  424 (447)
T ss_pred             CceEEEEcCCCceEEec-CCCCceeeeEEecCCCcEEEEEcCCc
Confidence            77799999775444433 3344679999999999 888888775

>KOG0771|consensus

Probab=99.78  E-value=5.5e-17  Score=144.67  Aligned_cols=193  Identities=17%  Similarity=0.291  Sum_probs=147.9

Q ss_pred             eEEeeCCCCCeEEEEeCCCeEEEEc-CCCcceeecccccCCeEEEEEccCCCEEEEEecCCcEEEEeCCCCceeEEeee-
Q psy12697        284 TSLDWNNNGSFLATGSYDGYARIWT-SDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSF-  361 (602)
Q Consensus       284 ~~~~~~~~~~~l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~-  361 (602)
                      .+++|+++|..+++|+.||.+++|+ .+.........|...|.++.|+|||+.|++.+.| ..++|++.++..+..... 
T Consensus       148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~  226 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTPF  226 (398)
T ss_pred             eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCc
Confidence            8899999999999999999999999 6667777788899999999999999999999999 899999999966665542 


Q ss_pred             -ccCCeeeeeccCCC-----eEEEe-eCCCeEEEEEcCCCc-----eeeEeccCCCCeEEEEECCCCCEEEEEECCCeEE
Q psy12697        362 -HSAPALDVDWQSNT-----SFASC-STDQHIHVCKLHSDK-----PVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLK  429 (602)
Q Consensus       362 -~~~~~~~~~~~~~~-----~~~~~-~~~~~i~i~d~~~~~-----~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~  429 (602)
                       .+.....+.|+.++     .+++. ...+.|..||+...+     +..+.......|++++.+++|+++|.|+.||.|-
T Consensus       227 ~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVa  306 (398)
T KOG0771|consen  227 SKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVA  306 (398)
T ss_pred             ccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcEE
Confidence             22234455565554     23332 234556666654321     2222223345799999999999999999999999


Q ss_pred             EEeCCCCeeeEeeccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCCCeEEEEeC
Q psy12697        430 IWSLDKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDA  509 (602)
Q Consensus       430 iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~  509 (602)
                      |++..+.+.++..+                                 ..|...|+.+.|+||.+++++.+.|....+..+
T Consensus       307 i~~~~~lq~~~~vk---------------------------------~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l  353 (398)
T KOG0771|consen  307 IYDAKSLQRLQYVK---------------------------------EAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKL  353 (398)
T ss_pred             EEEeceeeeeEeeh---------------------------------hhheeeeeeEEEcCCcCcccccccCCceeEEEE
Confidence            99998776665543                                 237777888888888899999888888887765


Q ss_pred             C
Q psy12697        510 A  510 (602)
Q Consensus       510 ~  510 (602)
                      .
T Consensus       354 ~  354 (398)
T KOG0771|consen  354 A  354 (398)
T ss_pred             e
Confidence            4

>KOG1272|consensus

Probab=99.77  E-value=3.5e-18  Score=153.53  Aligned_cols=266  Identities=16%  Similarity=0.224  Sum_probs=206.8

Q ss_pred             CcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEeeCCCCCeEEEEeCC
Q psy12697        222 ESEVFICAWNPVKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFLATGSYD  301 (602)
Q Consensus       222 ~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d  301 (602)
                      ...-+.+.++.+|.+|+.++..|.+..+|+.+........                 -...|..+.|-.+.+++|++ ..
T Consensus       129 eFGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~-----------------v~Etv~Dv~~LHneq~~AVA-QK  190 (545)
T KOG1272|consen  129 EFGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEIN-----------------VMETVRDVTFLHNEQFFAVA-QK  190 (545)
T ss_pred             ccCCeeeeecCCccEEEecCCccceeeeecccceeeeeee-----------------hhhhhhhhhhhcchHHHHhh-hh
Confidence            4456778999999999999999999999998876542222                 13668889998888877775 56


Q ss_pred             CeEEEEcCCCcceeecccccCCeEEEEEccCCCEEEEEecCCcEEEEeCCCCceeEEeeeccCCeeeeeccCCC-eEEEe
Q psy12697        302 GYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNT-SFASC  380 (602)
Q Consensus       302 g~i~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  380 (602)
                      ..+++||-.|..+.-+..|. .|..+.|.|.--+|++++..|.+..-|+.+|+.+..+....+.+..+.-.|-+ .+-+|
T Consensus       191 ~y~yvYD~~GtElHClk~~~-~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~G  269 (545)
T KOG1272|consen  191 KYVYVYDNNGTELHCLKRHI-RVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLG  269 (545)
T ss_pred             ceEEEecCCCcEEeehhhcC-chhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEc
Confidence            78999999998888777664 68999999998888899999999999999999999998888888888888854 56688


Q ss_pred             eCCCeEEEEEcCCCceeeEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeeeEeeccccccEEEEEECCCCCC
Q psy12697        381 STDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHDLQAHNKEIYTIKWSPTGPE  460 (602)
Q Consensus       381 ~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~  460 (602)
                      ..+|+|.+|.....+++..+..|.++|.++++.++|+++||.+.|..++|||++....+.++.. ..             
T Consensus       270 hsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t-p~-------------  335 (545)
T KOG1272|consen  270 HSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRT-PH-------------  335 (545)
T ss_pred             CCCceEEecCCCCcchHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeec-CC-------------
Confidence            8999999999999999999999999999999999999999999999999999998776655543 22             


Q ss_pred             CCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCCCeEEEEe-CCCC--ceeeeeccc--CCCeeEeeecCCc-
Q psy12697        461 TSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWD-AASG--QCEQQFSFH--SAPALDVDWQSNT-  534 (602)
Q Consensus       461 ~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd-~~~~--~~~~~~~~~--~~~v~~~~~s~~~-  534 (602)
                                           +...++||..|  +++.+....|.||. .-.+  .....+..|  .++|..+.|.|-. 
T Consensus       336 ---------------------~a~~ls~Sqkg--lLA~~~G~~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~ED  392 (545)
T KOG1272|consen  336 ---------------------PASNLSLSQKG--LLALSYGDHVQIWKDALKGSGHGETPYMNHRCGGPVEDLRFCPYED  392 (545)
T ss_pred             ---------------------Ccccccccccc--ceeeecCCeeeeehhhhcCCCCCCcchhhhccCcccccceeccHHH
Confidence                                 23344444444  55555666799994 3221  222222223  3479999999865 


Q ss_pred             eEEEeeCCC
Q psy12697        535 SFASCSTDQ  543 (602)
Q Consensus       535 ~l~~~~~d~  543 (602)
                      .|-.|-..|
T Consensus       393 vLGIGH~~G  401 (545)
T KOG1272|consen  393 VLGIGHAGG  401 (545)
T ss_pred             eeeccccCC
Confidence            444443333

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.76  E-value=7.3e-17  Score=158.75  Aligned_cols=218  Identities=17%  Similarity=0.172  Sum_probs=151.1

Q ss_pred             EeeCCCcceEEEEEcCCCCEEEEeeCC---CcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEeeCCCCC
Q psy12697        217 KLIGHESEVFICAWNPVKDFLASGSGD---STARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGS  293 (602)
Q Consensus       217 ~l~~h~~~v~~~~~~~~~~~l~s~~~d---g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  293 (602)
                      .+..|...+...+|+|||+.|+.++.+   ..|.+||+.++....      . ..          .......++|+|||+
T Consensus       198 ~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~------l-~~----------~~g~~~~~~wSPDG~  260 (429)
T PRK01742        198 IVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKV------V-AS----------FRGHNGAPAFSPDGS  260 (429)
T ss_pred             EeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEE------E-ec----------CCCccCceeECCCCC
Confidence            345677889999999999999887653   469999997764211      0 00          012344689999999


Q ss_pred             eEEEEe-CCCeEEE--EcCCCcceeecccccCCeEEEEEccCCCEEEEEe-cCCcEEEEeCCCCc-eeEEeeeccCCeee
Q psy12697        294 FLATGS-YDGYARI--WTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAG-VDKTTIIWDAASGQ-CEQQFSFHSAPALD  368 (602)
Q Consensus       294 ~l~~~~-~dg~i~i--~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~~wd~~~~~-~~~~~~~~~~~~~~  368 (602)
                      .|+.+. .+|.+.+  ||..+.....+..+...+....|+|||+.|+.++ .+|...+|++.... ....+ .+..  ..
T Consensus       261 ~La~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~~~--~~  337 (429)
T PRK01742        261 RLAFASSKDGVLNIYVMGANGGTPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV-GGRG--YS  337 (429)
T ss_pred             EEEEEEecCCcEEEEEEECCCCCeEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe-cCCC--CC
Confidence            888765 5776555  4666666666767777788999999999877655 57888888764322 22222 2222  45


Q ss_pred             eeccCCCeEE-EeeCCCeEEEEEcCCCceeeEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEeC--CCCeeeEeeccc
Q psy12697        369 VDWQSNTSFA-SCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSL--DKDNCVHDLQAH  445 (602)
Q Consensus       369 ~~~~~~~~~~-~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~--~~~~~~~~~~~~  445 (602)
                      ..|+|++..+ +.+. ..+.+||+.+++.......+  ......|+|+|++|+.++.++.+.+|++  .+++....+..+
T Consensus       338 ~~~SpDG~~ia~~~~-~~i~~~Dl~~g~~~~lt~~~--~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~  414 (429)
T PRK01742        338 AQISADGKTLVMING-DNVVKQDLTSGSTEVLSSTF--LDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKARLPGS  414 (429)
T ss_pred             ccCCCCCCEEEEEcC-CCEEEEECCCCCeEEecCCC--CCCCceECCCCCEEEEEEcCCCceEEEEEECCCCceEEccCC
Confidence            6789887644 4444 55677999888754332222  2356789999999999999998888875  357777778777


Q ss_pred             cccEEEEEECCC
Q psy12697        446 NKEIYTIKWSPT  457 (602)
Q Consensus       446 ~~~i~~~~~~~~  457 (602)
                      .+.+...+|+|-
T Consensus       415 ~g~~~~p~wsp~  426 (429)
T PRK01742        415 DGQVKFPAWSPY  426 (429)
T ss_pred             CCCCCCcccCCC
Confidence            777777777763

>KOG1523|consensus

Probab=99.76  E-value=2e-16  Score=135.70  Aligned_cols=247  Identities=22%  Similarity=0.351  Sum_probs=183.5

Q ss_pred             CCceeEEeeCCCCCeEEEEeCCCeEEEEcCCC----cceeecccccCCeEEEEEccCCCEEEEEecCCcEEEEeC-CCCc
Q psy12697        280 NKDVTSLDWNNNGSFLATGSYDGYARIWTSDG----SLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDA-ASGQ  354 (602)
Q Consensus       280 ~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~----~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~-~~~~  354 (602)
                      ..+|+|.+|++|+..+|++..+..|.||...+    +...++..|...|+.++|+|..+.|++++.|..-++|.. ..++
T Consensus        10 ~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~~   89 (361)
T KOG1523|consen   10 LEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGT   89 (361)
T ss_pred             cCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCCe
Confidence            37899999999999999999999999999764    346788899999999999999999999999999999998 4443


Q ss_pred             e--eEEeeeccCCeeeeeccCC-CeEEEeeCCCeEEEEEcCCCcee----eEeccCCCCeEEEEECCCCCEEEEEECCCe
Q psy12697        355 C--EQQFSFHSAPALDVDWQSN-TSFASCSTDQHIHVCKLHSDKPV----KSFEGHTNEVNAIKWDPQGLLLASCSDDMT  427 (602)
Q Consensus       355 ~--~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~i~d~~~~~~~----~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~  427 (602)
                      -  ...+..+....+++.|+|. +.|++|+....|.+|-++...--    ..-+.+...|++++|+|++-+|+.|+.|+.
T Consensus        90 WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~D~k  169 (361)
T KOG1523|consen   90 WKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDGK  169 (361)
T ss_pred             eccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecccccCcc
Confidence            3  3344557788999999997 67999999999999988654321    122346678999999999999999999999


Q ss_pred             EEEEeCCCCeeeEeeccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCCCeEEEE
Q psy12697        428 LKIWSLDKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIW  507 (602)
Q Consensus       428 i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iw  507 (602)
                      .|+|..-    ++.+.....+      .|-+.      ....-.+........+.+..+.|+|+|..|+-.+.|..+.+=
T Consensus       170 ~rVfSay----IK~Vdekpap------~pWgs------k~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~  233 (361)
T KOG1523|consen  170 CRVFSAY----IKGVDEKPAP------TPWGS------KMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFV  233 (361)
T ss_pred             eeEEEEe----eeccccCCCC------CCCcc------CCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEe
Confidence            9999642    2222111100      00000      000011112223467889999999999999999999999999


Q ss_pred             eCCCCc-eeeeecccCCCeeEeeecCCceEEEeeCC
Q psy12697        508 DAASGQ-CEQQFSFHSAPALDVDWQSNTSFASCSTD  542 (602)
Q Consensus       508 d~~~~~-~~~~~~~~~~~v~~~~~s~~~~l~~~~~d  542 (602)
                      |..... .+.......-|..++.|-.+..++.++.|
T Consensus       234 da~~p~~~v~~~~~~~lP~ls~~~ise~~vv~ag~~  269 (361)
T KOG1523|consen  234 DAAGPSERVQSVATAQLPLLSVSWISENSVVAAGYD  269 (361)
T ss_pred             ecCCCchhccchhhccCCceeeEeecCCceeecCCC
Confidence            987664 34444444467778877665555555555

>KOG0771|consensus

Probab=99.75  E-value=2.3e-16  Score=140.73  Aligned_cols=191  Identities=14%  Similarity=0.149  Sum_probs=141.5

Q ss_pred             eeeeccCC-CeEEEeeCCCeEEEEEcCCCceeeEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeeeEeeccc
Q psy12697        367 LDVDWQSN-TSFASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHDLQAH  445 (602)
Q Consensus       367 ~~~~~~~~-~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~  445 (602)
                      ..++++.+ ..+++++.||.+++|+..+...+.....|...|.++.|+|||+.|++.+.| ..+||+.+++..+.+....
T Consensus       148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~  226 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTPF  226 (398)
T ss_pred             eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCc
Confidence            67778877 779999999999999999988888888999999999999999999999999 8999999999766655421


Q ss_pred             cccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCC-----CEEEEEeCCCeEEEEeCCCCce-----e
Q psy12697        446 NKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRG-----NYILSAGVDKTTIIWDAASGQC-----E  515 (602)
Q Consensus       446 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~-----~~l~s~~~dg~i~iwd~~~~~~-----~  515 (602)
                      ..                                ......+.|+.|+     ..++....-+.|+.||+.....     .
T Consensus       227 ~k--------------------------------~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~  274 (398)
T KOG0771|consen  227 SK--------------------------------DEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRL  274 (398)
T ss_pred             cc--------------------------------chhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccch
Confidence            11                                1122233344343     2223333445566666543322     1


Q ss_pred             eeecccCCCeeEeeecCCc-eEEEeeCCCcEEEeecCCCCceeeeecccccceEEEEecCCcEEEEEECCCCCeEEEecc
Q psy12697        516 QQFSFHSAPALDVDWQSNT-SFASCSTDQHIHVCKLHSDKPVKSFEGHTTGQLVHSYKGTGGIFEVCWNSRGDKVGASAS  594 (602)
Q Consensus       516 ~~~~~~~~~v~~~~~s~~~-~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~  594 (602)
                      .........|++++.++|| +++.|+.||.|-|++..+.+.++..+..          +..-|+.+.|+||.+++++.+.
T Consensus       275 ~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~vk~a----------H~~~VT~ltF~Pdsr~~~svSs  344 (398)
T KOG0771|consen  275 RKKIKRFKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRLQYVKEA----------HLGFVTGLTFSPDSRYLASVSS  344 (398)
T ss_pred             hhhhhccCcceeEEEcCCCcEEEEeccCCcEEEEEeceeeeeEeehhh----------heeeeeeEEEcCCcCccccccc
Confidence            2222234579999999999 9999999999999998877666555422          1256999999999999999888


Q ss_pred             CCeEEe
Q psy12697        595 DGSVFK  600 (602)
Q Consensus       595 dg~v~i  600 (602)
                      |....|
T Consensus       345 ~~~~~v  350 (398)
T KOG0771|consen  345 DNEAAV  350 (398)
T ss_pred             CCceeE
Confidence            876655

>KOG1912|consensus

Probab=99.74  E-value=4e-15  Score=142.49  Aligned_cols=338  Identities=14%  Similarity=0.206  Sum_probs=237.3

Q ss_pred             cceeeeecccceeeeeeeccCCceEEEEECCCC------------CeEEEeeCCceEEEEecCCceeEEEeeccCceEEE
Q psy12697        120 LTLPLWDVERGECLNTLTRHTEPVYSVAFSPDG------------KFLASGSFDKCVHIWSARTGQLVHSYKGTGGIFEV  187 (602)
Q Consensus       120 ~~i~vwd~~~~~~~~~l~~h~~~V~~~~~s~d~------------~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~  187 (602)
                      ..|.|-|..+.+.++.+.-|...|+.+.|.|-.            -+||++...|.|.+||...+..+.           
T Consensus        35 slV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~-----------  103 (1062)
T KOG1912|consen   35 SLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVIN-----------  103 (1062)
T ss_pred             ceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhh-----------
Confidence            568899999999999999999999999998721            267778888999999998776553           


Q ss_pred             EeCCCCCCCCCCCCccccccccccCCcceEeeCCCcceEEEEEcC---CC-CEEEEeeCCCcEEEEeCCCCCCCCCccce
Q psy12697        188 CWNSRGTPPNPPESMEVDASIEIPQSKATKLIGHESEVFICAWNP---VK-DFLASGSGDSTARIWDMTDSTKKDPKELQ  263 (602)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~---~~-~~l~s~~~dg~i~iw~~~~~~~~~~~~~~  263 (602)
                                                   .+..|..++..++|-+   +. ..|++-....++.+|+..+++........
T Consensus       104 -----------------------------~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys  154 (1062)
T KOG1912|consen  104 -----------------------------WLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYS  154 (1062)
T ss_pred             -----------------------------hhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccC
Confidence                                         3445777888888866   33 57777788899999999999875443322


Q ss_pred             EEEEEEecCCCcccCCCCceeEEeeCC-CCCeEEEEeCCCeEEEEcCC--------CcceeecccccC------------
Q psy12697        264 IVLRHCISKGGTEVPSNKDVTSLDWNN-NGSFLATGSYDGYARIWTSD--------GSLKSTLGQHKG------------  322 (602)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~~~~--------~~~~~~~~~~~~------------  322 (602)
                                      .....|+.+.| |.+.+..-+..|.+.+.+.-        ++..+....|..            
T Consensus       155 ----------------~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~n  218 (1062)
T KOG1912|consen  155 ----------------HEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGN  218 (1062)
T ss_pred             ----------------CcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccc
Confidence                            34566788888 66677777777877776532        233332222221            


Q ss_pred             ----C---------eEEEEEccCCCEEEEEecCCcEEEEeCCCCceeEEeeeccCCeeeeeccCC---CeEEEeeCCCeE
Q psy12697        323 ----P---------IFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSN---TSFASCSTDQHI  386 (602)
Q Consensus       323 ----~---------i~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~i  386 (602)
                          .         .-.++|+|.-+.++.......+.++|++-..++.......+.+.-+.+.|+   ..+++...||.+
T Consensus       219 s~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vvpier~~akfv~vlP~~~rd~LfclH~nG~l  298 (1062)
T KOG1912|consen  219 STTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRL  298 (1062)
T ss_pred             cccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhceeEEEEeccCCcceeEeccCCCcceEEEEecCCeE
Confidence                0         113456787777777777888999999988888888777777667777665   337777788888


Q ss_pred             EEEEcCC----------------CceeeEe---c----------------------------------------------
Q psy12697        387 HVCKLHS----------------DKPVKSF---E----------------------------------------------  401 (602)
Q Consensus       387 ~i~d~~~----------------~~~~~~~---~----------------------------------------------  401 (602)
                      .+|-.+.                +..+..+   +                                              
T Consensus       299 tirvrk~~~~~f~~~~~~l~~dl~~Q~~~vr~m~~~rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri~~~~~s~~ie  378 (1062)
T KOG1912|consen  299 TIRVRKEEPTEFKKPNASLSMDLGEQVHVVRPMEEFRPVIGASCPSTPSALAVLYSSGDSTFWQLSNGRIHLDYRSSSIE  378 (1062)
T ss_pred             EEEEeeccCccccccchhhccccccceEEEeechhcccceeecCCCChhhhhhhhhcchhHHHhhhcCCcCccccccccc
Confidence            8876543                1110000   0                                              


Q ss_pred             --------------------------cCCCCeEEEEECC-----------CC-------CEEEEEECCCeEEEEeCCCCe
Q psy12697        402 --------------------------GHTNEVNAIKWDP-----------QG-------LLLASCSDDMTLKIWSLDKDN  437 (602)
Q Consensus       402 --------------------------~~~~~i~~~~~~~-----------~~-------~~l~~~~~dg~i~iwd~~~~~  437 (602)
                                                +|....++....|           .+       .++|.|...|+|.++|+.++.
T Consensus       379 l~~pf~f~~~~~~v~k~~l~~LS~dg~h~sGs~~~~~~p~p~~t~~~~~p~~n~~~~~~pLvAvGT~sGTV~vvdvst~~  458 (1062)
T KOG1912|consen  379 LVLPFDFNLSTKLVGKTSLISLSDDGSHSSGSTCVRMRPMPELTKVENDPGGNTPAGTVPLVAVGTNSGTVDVVDVSTNA  458 (1062)
T ss_pred             ccccccccCceeehhhccccchhhcCCCCCCceeeecccCcccceeecCCCCCccceeeeeEEeecCCceEEEEEecchh
Confidence                                      1333344433333           11       368899999999999999999


Q ss_pred             eeEeeccccccEEEEEECCCCCCCCCCCc------ce----ee----------eeeeccCCccCCeEEEEEccCCCEEEE
Q psy12697        438 CVHDLQAHNKEIYTIKWSPTGPETSNPNM------SL----IF----------ILKSTLGQHKGPIFALKWNKRGNYILS  497 (602)
Q Consensus       438 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~------~~----~~----------~~~~~~~~~~~~v~~i~~s~~~~~l~s  497 (602)
                      .-..+..|...|.++.|......+.....      ..    ..          .++...+..+.+|..+..|..|+||+.
T Consensus       459 v~~~fsvht~~VkgleW~g~sslvSfsys~~n~~sg~vrN~l~vtdLrtGlsk~fR~l~~~despI~~irvS~~~~yLai  538 (1062)
T KOG1912|consen  459 VAASFSVHTSLVKGLEWLGNSSLVSFSYSHVNSASGGVRNDLVVTDLRTGLSKRFRGLQKPDESPIRAIRVSSSGRYLAI  538 (1062)
T ss_pred             hhhhhcccccceeeeeeccceeEEEeeeccccccccceeeeEEEEEcccccccccccCCCCCcCcceeeeecccCceEEE
Confidence            88899999999999999766543321110      00    00          011223346789999999999999999


Q ss_pred             EeCCCeEEEEeCCCCc
Q psy12697        498 AGVDKTTIIWDAASGQ  513 (602)
Q Consensus       498 ~~~dg~i~iwd~~~~~  513 (602)
                      .-.|.-+.+||+++..
T Consensus       539 ~Fr~~plEiwd~kt~~  554 (1062)
T KOG1912|consen  539 LFRREPLEIWDLKTLR  554 (1062)
T ss_pred             EecccchHHHhhccch
Confidence            9999999999996643

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.74  E-value=2.8e-16  Score=154.60  Aligned_cols=233  Identities=15%  Similarity=0.191  Sum_probs=161.8

Q ss_pred             CCeEEEEcCCCcceeecccccCCeEEEEEccCCCEEEEEecC---CcEEEEeCCCCceeEEeeeccCCeeeeeccCCCe-
Q psy12697        301 DGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVD---KTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTS-  376 (602)
Q Consensus       301 dg~i~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---g~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-  376 (602)
                      +..|.+||.++.....+..+...+...+|+|+|+.|+.++.+   ..|.+||+.+++.... ...........|+|++. 
T Consensus       183 ~~~i~i~d~dg~~~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l-~~~~g~~~~~~wSPDG~~  261 (429)
T PRK01742        183 PYEVRVADYDGFNQFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVV-ASFRGHNGAPAFSPDGSR  261 (429)
T ss_pred             eEEEEEECCCCCCceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEE-ecCCCccCceeECCCCCE
Confidence            468999999887777777888889999999999999987654   3699999988764332 22223344689999875 


Q ss_pred             EEEe-eCCCeEE--EEEcCCCceeeEeccCCCCeEEEEECCCCCEEEEEE-CCCeEEEEeCCCCeeeEeeccccccEEEE
Q psy12697        377 FASC-STDQHIH--VCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCS-DDMTLKIWSLDKDNCVHDLQAHNKEIYTI  452 (602)
Q Consensus       377 ~~~~-~~~~~i~--i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~i~~~  452 (602)
                      ++.+ ..+|.+.  +||+.+++ ...+..+...+....|+|||+.|+..+ .+|..+||+++..........        
T Consensus       262 La~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l~--------  332 (429)
T PRK01742        262 LAFASSKDGVLNIYVMGANGGT-PSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLVG--------  332 (429)
T ss_pred             EEEEEecCCcEEEEEEECCCCC-eEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEec--------
Confidence            5554 3577654  55666655 455666777788999999999877665 568888887653211111100        


Q ss_pred             EECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeeecccCCCeeEeeecC
Q psy12697        453 KWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQS  532 (602)
Q Consensus       453 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~  532 (602)
                                                +..  ....|+|||++|+..+.++ +.+||+.+++.......+  ....+.|+|
T Consensus       333 --------------------------~~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~~--~~~~~~~sP  381 (429)
T PRK01742        333 --------------------------GRG--YSAQISADGKTLVMINGDN-VVKQDLTSGSTEVLSSTF--LDESPSISP  381 (429)
T ss_pred             --------------------------CCC--CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEecCCC--CCCCceECC
Confidence                                      111  2356889999998887765 666999988765333222  235678999


Q ss_pred             Cc-eEEEeeCCCcEEEeecC--CCCceeeeecccccceEEEEecCCcEEEEEECCC
Q psy12697        533 NT-SFASCSTDQHIHVCKLH--SDKPVKSFEGHTTGQLVHSYKGTGGIFEVCWNSR  585 (602)
Q Consensus       533 ~~-~l~~~~~d~~i~iw~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd  585 (602)
                      || .|++++.++.+.+|.+.  +++.+..+..+.           +.+..++|+|-
T Consensus       382 dG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~~-----------g~~~~p~wsp~  426 (429)
T PRK01742        382 NGIMIIYSSTQGLGKVLQLVSADGRFKARLPGSD-----------GQVKFPAWSPY  426 (429)
T ss_pred             CCCEEEEEEcCCCceEEEEEECCCCceEEccCCC-----------CCCCCcccCCC
Confidence            99 89999999999888863  345555554332           56788999985

>KOG2315|consensus

Probab=99.74  E-value=7.4e-15  Score=135.92  Aligned_cols=330  Identities=15%  Similarity=0.258  Sum_probs=212.3

Q ss_pred             eeeeecccceeeeeeecc---CCceEEEEECCCCCeEEEeeCCceEEEEecCCceeEEEeeccCceEEEEeCCCCCCCCC
Q psy12697        122 LPLWDVERGECLNTLTRH---TEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKGTGGIFEVCWNSRGTPPNP  198 (602)
Q Consensus       122 i~vwd~~~~~~~~~l~~h---~~~V~~~~~s~d~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (602)
                      +.+|+....+...+...+   ..+.+..++|++|+++|.+ .+..++|++..++..+.+....                 
T Consensus        13 ~~l~~~~~~~~~~~~f~~~~~~~~~~v~~~S~~G~lfA~~-~~~~v~i~~~~~~~~~lt~~~~-----------------   74 (566)
T KOG2315|consen   13 FYLFNGPGSKDAVTVFEQNKTSRPCNVFAYSNNGRLFAYS-DNQVVKVFEIATLKVVLCVELK-----------------   74 (566)
T ss_pred             eEEeccCCccccccccccCCCCCcceeEEEcCCCcEEEEE-cCCeEEEEEccCCcEEEEeccc-----------------
Confidence            455655443333333333   4456788999999988876 4677999998888644332221                 


Q ss_pred             CCCccccccccccCCcceEeeCCCcceEEEEEcCCCCEEEEe-----eC-----CCcEEEEeCCCCCCCCCccceEEEEE
Q psy12697        199 PESMEVDASIEIPQSKATKLIGHESEVFICAWNPVKDFLASG-----SG-----DSTARIWDMTDSTKKDPKELQIVLRH  268 (602)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~s~-----~~-----dg~i~iw~~~~~~~~~~~~~~~~~~~  268 (602)
                                               .++++.|+|-+.+|.+-     ..     .-.+.+|+++++.........     
T Consensus        75 -------------------------~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~vet~~~~s~~q~k-----  124 (566)
T KOG2315|consen   75 -------------------------KTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVYNVETGVQRSQIQKK-----  124 (566)
T ss_pred             -------------------------eeeeeeecccccccccccccccccCCCCCCCceeeeeeccceehhheehh-----
Confidence                                     45666666666666542     11     234678888874322111111     


Q ss_pred             EecCCCcccCCCCceeEEeeCCCCCeEEEEeCCCeEEEEcCCCcceeecccccCCeEEEEEccCC--CEEEE-----Eec
Q psy12697        269 CISKGGTEVPSNKDVTSLDWNNNGSFLATGSYDGYARIWTSDGSLKSTLGQHKGPIFALKWNKRG--NYILS-----AGV  341 (602)
Q Consensus       269 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~l~~-----~~~  341 (602)
                                 ...-.+..|++|..+ ++--..+.+++|+..+.....-.-|...|..+.+||.+  ..+++     .+.
T Consensus       125 -----------~Q~~W~~qfs~dEsl-~arlv~nev~f~~~~~f~~~~~kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGa  192 (566)
T KOG2315|consen  125 -----------MQNGWVPQFSIDESL-AARLVSNEVQFYDLGSFKTIQHKLSVSGITMLSLSPGPEPPFVAVYVPEKKGA  192 (566)
T ss_pred             -----------hhcCcccccccchhh-hhhhhcceEEEEecCCccceeeeeeccceeeEEecCCCCCceEEEEccCCCCC
Confidence                       111257888888754 33344578999998764444444567889999999873  23432     355


Q ss_pred             CCcEEEEeCCCCce---eEEeeeccCCeeeeeccCCCe--EEEee-----------CCCeEEEEEcCCCceeeEeccCCC
Q psy12697        342 DKTTIIWDAASGQC---EQQFSFHSAPALDVDWQSNTS--FASCS-----------TDQHIHVCKLHSDKPVKSFEGHTN  405 (602)
Q Consensus       342 dg~i~~wd~~~~~~---~~~~~~~~~~~~~~~~~~~~~--~~~~~-----------~~~~i~i~d~~~~~~~~~~~~~~~  405 (602)
                      -+.+++|.......   +..-.+....-..+.|.+.+.  |+..+           .+..++++++........+. ..+
T Consensus       193 Pa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~-k~G  271 (566)
T KOG2315|consen  193 PASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLL-KEG  271 (566)
T ss_pred             CcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecC-CCC
Confidence            67899998763221   111222333445566766533  33322           13468888887444333333 578


Q ss_pred             CeEEEEECCCCCEEEEE--ECCCeEEEEeCCCCeeeEeeccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCe
Q psy12697        406 EVNAIKWDPQGLLLASC--SDDMTLKIWSLDKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPI  483 (602)
Q Consensus       406 ~i~~~~~~~~~~~l~~~--~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  483 (602)
                      +|.++.|+|+++-++++  -.-..+.|||++- .++..+                                    .+++-
T Consensus       272 PVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~-~~v~df------------------------------------~egpR  314 (566)
T KOG2315|consen  272 PVHDVTWSPSGREFAVVYGFMPAKVTIFNLRG-KPVFDF------------------------------------PEGPR  314 (566)
T ss_pred             CceEEEECCCCCEEEEEEecccceEEEEcCCC-CEeEeC------------------------------------CCCCc
Confidence            99999999999877664  4467899999863 444443                                    34566


Q ss_pred             EEEEEccCCCEEEEEeCC---CeEEEEeCCCCceeeeecccCCCeeEeeecCCc-eEEEeeC------CCcEEEeecC
Q psy12697        484 FALKWNKRGNYILSAGVD---KTTIIWDAASGQCEQQFSFHSAPALDVDWQSNT-SFASCST------DQHIHVCKLH  551 (602)
Q Consensus       484 ~~i~~s~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~-~l~~~~~------d~~i~iw~~~  551 (602)
                      +++-|+|.|++++.+|.+   |.+.|||+.+.+++..+....  -+-+.|+||| +++++..      |+.++||+..
T Consensus       315 N~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~--tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwhyt  390 (566)
T KOG2315|consen  315 NTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAAN--TTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYT  390 (566)
T ss_pred             cceEECCCCCEEEEeecCCCCCceEEEeccchhhccccccCC--ceEEEEcCCCcEEEEEeccccEEecCCeEEEEec
Confidence            778899999999988875   789999999999998887543  4567999999 8887764      7889999863

>KOG1334|consensus

Probab=99.74  E-value=6e-17  Score=146.62  Aligned_cols=302  Identities=19%  Similarity=0.254  Sum_probs=217.9

Q ss_pred             eEeeCCCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEeeCC--CCC
Q psy12697        216 TKLIGHESEVFICAWNPVKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNN--NGS  293 (602)
Q Consensus       216 ~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~  293 (602)
                      ..|..|.+.|..+.|+..|..|++++.|..|.+||+........+.               ..|...|..-.|-|  +..
T Consensus       136 ~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~---------------SGH~~NvfQaKFiP~s~d~  200 (559)
T KOG1334|consen  136 KKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFE---------------SGHCNNVFQAKFIPFSGDR  200 (559)
T ss_pred             hcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccc---------------cccccchhhhhccCCCCCc
Confidence            5678899999999999999999999999999999998876543322               22345555556766  446


Q ss_pred             eEEEEeCCCeEEEEcCC--C--cceeecccccCCeEEEEEccCCC-EEEEEecCCcEEEEeCCCCceeEEeee---ccC-
Q psy12697        294 FLATGSYDGYARIWTSD--G--SLKSTLGQHKGPIFALKWNKRGN-YILSAGVDKTTIIWDAASGQCEQQFSF---HSA-  364 (602)
Q Consensus       294 ~l~~~~~dg~i~i~~~~--~--~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~~wd~~~~~~~~~~~~---~~~-  364 (602)
                      .+++++.||.+++=.+.  +  +....+..|.++|.-++.-|+.. -|++++.|+.+.-+|++.+.....+..   +.. 
T Consensus       201 ti~~~s~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~  280 (559)
T KOG1334|consen  201 TIVTSSRDGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKE  280 (559)
T ss_pred             CceeccccCceeeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCcc
Confidence            79999999999987643  2  22456678999999999988764 588999999999999988755443321   222 


Q ss_pred             --CeeeeeccCC--CeEEEeeCCCeEEEEEcCCCc------eeeEeccC------CCCeEEEEECCCCCEEEEEECCCeE
Q psy12697        365 --PALDVDWQSN--TSFASCSTDQHIHVCKLHSDK------PVKSFEGH------TNEVNAIKWDPQGLLLASCSDDMTL  428 (602)
Q Consensus       365 --~~~~~~~~~~--~~~~~~~~~~~i~i~d~~~~~------~~~~~~~~------~~~i~~~~~~~~~~~l~~~~~dg~i  428 (602)
                        ....++..|.  +.+++++.|..+++||.+.-.      .+.++..|      .-.|++++|+.++.-|.+.-.|-.|
T Consensus       281 ~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~I  360 (559)
T KOG1334|consen  281 RVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDI  360 (559)
T ss_pred             ceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccce
Confidence              3455666664  569999999999999986532      12333222      2359999999877777777777789


Q ss_pred             EEEeCCCCeeeEeeccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccC--CeEEEE-EccCCCEEEEEeCCCeEE
Q psy12697        429 KIWSLDKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKG--PIFALK-WNKRGNYILSAGVDKTTI  505 (602)
Q Consensus       429 ~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~i~-~s~~~~~l~s~~~dg~i~  505 (602)
                      +++.-.-+. -.....         .+|.           -......+++|..  .|..+- |-|...|+++|+.-|.|.
T Consensus       361 YLF~~~~~~-G~~p~~---------~s~~-----------~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIF  419 (559)
T KOG1334|consen  361 YLFNKSMGD-GSEPDP---------SSPR-----------EQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIF  419 (559)
T ss_pred             EEecccccc-CCCCCC---------Ccch-----------hhccchhhcccccccccceeeeccCccceEEecCccceEE
Confidence            998432211 000000         0000           0011122445543  355554 467889999999999999


Q ss_pred             EEeCCCCceeeeecccCCCeeEeeecCCc-eEEEeeCCCcEEEeecCCC
Q psy12697        506 IWDAASGQCEQQFSFHSAPALDVDWQSNT-SFASCSTDQHIHVCKLHSD  553 (602)
Q Consensus       506 iwd~~~~~~~~~~~~~~~~v~~~~~s~~~-~l~~~~~d~~i~iw~~~~~  553 (602)
                      ||+-.+++.++.+.+...-|+|+.=+|-- .||++|-|..|+||.-.+.
T Consensus       420 iW~K~t~eii~~MegDr~VVNCLEpHP~~PvLAsSGid~DVKIWTP~~~  468 (559)
T KOG1334|consen  420 IWDKKTGEIIRFMEGDRHVVNCLEPHPHLPVLASSGIDHDVKIWTPLTA  468 (559)
T ss_pred             EEecchhHHHHHhhcccceEeccCCCCCCchhhccCCccceeeecCCcc
Confidence            99999999999998877789999999998 9999999999999986443

>KOG2394|consensus

Probab=99.73  E-value=7e-16  Score=141.52  Aligned_cols=219  Identities=19%  Similarity=0.298  Sum_probs=156.2

Q ss_pred             CCCCCeEEEEeCCCeEEEEcCCCcceeec-----ccccCCeEEEEEccCC-CEEEEEecCCcEEEEeCCCCceeEEeeec
Q psy12697        289 NNNGSFLATGSYDGYARIWTSDGSLKSTL-----GQHKGPIFALKWNKRG-NYILSAGVDKTTIIWDAASGQCEQQFSFH  362 (602)
Q Consensus       289 ~~~~~~l~~~~~dg~i~i~~~~~~~~~~~-----~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~~wd~~~~~~~~~~~~~  362 (602)
                      .|.+--+.+|-..|.+.+.|........+     ...+..++++.|-|.+ ..++++-.+|.+.++|....       ..
T Consensus       182 ~~~g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~-------~~  254 (636)
T KOG2394|consen  182 TPKGLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIV-------CG  254 (636)
T ss_pred             CCCCcceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeecccc-------cc
Confidence            45677788999999999998653322221     1234789999999855 45667788999999986211       11


Q ss_pred             cCCeeeeeccCCCeEEEeeCCCeEEEEEcCCCceeeEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeeeEee
Q psy12697        363 SAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHDL  442 (602)
Q Consensus       363 ~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~  442 (602)
                      ..............|......+      ..+..++..+.--.+.|..++|+|||++||+.+.||.+||||..+.+.+..+
T Consensus       255 ~t~p~~~~~k~~~~f~i~t~ks------k~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~m  328 (636)
T KOG2394|consen  255 ATAPSYQALKDGDQFAILTSKS------KKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVM  328 (636)
T ss_pred             CCCCcccccCCCCeeEEeeeec------cccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHH
Confidence            1111111111223333222111      1122455555545668999999999999999999999999999987766554


Q ss_pred             ccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeeecccC
Q psy12697        443 QAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHS  522 (602)
Q Consensus       443 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~  522 (602)
                      +.                                  .-+...|++|||||+||++|++|.-|.||.+..++.+..-.+|.
T Consensus       329 kS----------------------------------YFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGqGHk  374 (636)
T KOG2394|consen  329 KS----------------------------------YFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQGHK  374 (636)
T ss_pred             Hh----------------------------------hccceEEEEEcCCccEEEecCCcceEEEEEeccceEEEeccccc
Confidence            43                                  23566788888899999999999999999999999999999999


Q ss_pred             CCeeEeeecC------------------------------------------------Cc-eEEEeeCCCcEEEeecCCC
Q psy12697        523 APALDVDWQS------------------------------------------------NT-SFASCSTDQHIHVCKLHSD  553 (602)
Q Consensus       523 ~~v~~~~~s~------------------------------------------------~~-~l~~~~~d~~i~iw~~~~~  553 (602)
                      +.|..++|.|                                                .. ++.+.+.|-.+.+||+...
T Consensus       375 SWVs~VaFDpytt~~ee~~~~~~~~~~~~~~~~~~~~r~~~~~S~~~~~~s~~~~~~~v~YRfGSVGqDTqlcLWDlteD  454 (636)
T KOG2394|consen  375 SWVSVVAFDPYTTSTEEWNNFSGMDSTFSDVAHDFEIRANGTGSAEGCPLSSFNRINSVTYRFGSVGQDTQLCLWDLTED  454 (636)
T ss_pred             cceeeEeecccccccccccccccccccccchhcccccccCCCCCcCCCcccccccccceEEEeecccccceEEEEecchh
Confidence            9999999972                                                12 5778889999999999765


Q ss_pred             C
Q psy12697        554 K  554 (602)
Q Consensus       554 ~  554 (602)
                      .
T Consensus       455 ~  455 (636)
T KOG2394|consen  455 V  455 (636)
T ss_pred             h
Confidence            3

>KOG1272|consensus

Probab=99.73  E-value=2.6e-17  Score=148.00  Aligned_cols=274  Identities=15%  Similarity=0.225  Sum_probs=209.0

Q ss_pred             ceeEEeeCCCCCeEEEEeCCCeEEEEcCCCcceeecccccCCeEEEEEccCCCEEEEEecCCcEEEEeCCCCceeEEeee
Q psy12697        282 DVTSLDWNNNGSFLATGSYDGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSF  361 (602)
Q Consensus       282 ~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~  361 (602)
                      ....+.++.+|+.++.|+..|.+..+|.....+..-..-...|.++.|..+.++++++ ....+.+||- .|..+..+..
T Consensus       131 GPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~Etv~Dv~~LHneq~~AVA-QK~y~yvYD~-~GtElHClk~  208 (545)
T KOG1272|consen  131 GPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINVMETVRDVTFLHNEQFFAVA-QKKYVYVYDN-NGTELHCLKR  208 (545)
T ss_pred             CCeeeeecCCccEEEecCCccceeeeecccceeeeeeehhhhhhhhhhhcchHHHHhh-hhceEEEecC-CCcEEeehhh
Confidence            3567889999999999999999999997644333333345678999999888877766 4668999994 4555555543


Q ss_pred             ccCCeeeeeccCCCe-EEEeeCCCeEEEEEcCCCceeeEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeeeE
Q psy12697        362 HSAPALDVDWQSNTS-FASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVH  440 (602)
Q Consensus       362 ~~~~~~~~~~~~~~~-~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~  440 (602)
                       ...+..+.|.|... +++++..|.+..-|+.+|+.+..+....+.+..++-+|-...+-+|...|+|.+|.....+++.
T Consensus       209 -~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePLv  287 (545)
T KOG1272|consen  209 -HIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLV  287 (545)
T ss_pred             -cCchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCcchHH
Confidence             34677888888755 6677788999999999999999999889999999999999999999999999999998888776


Q ss_pred             eeccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeeecc
Q psy12697        441 DLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSF  520 (602)
Q Consensus       441 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~  520 (602)
                      .+..                                  |.++|.++++.++|+|++|.+.|..++|||+++...+.++..
T Consensus       288 KiLc----------------------------------H~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t  333 (545)
T KOG1272|consen  288 KILC----------------------------------HRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRT  333 (545)
T ss_pred             HHHh----------------------------------cCCCcceEEECCCCcEEeecccccceeEeeeccccccceeec
Confidence            6655                                  566677777777999999999999999999998887776664


Q ss_pred             cCCCeeEeeecCCceEEEeeCCCcEEEeec-CCCCceeeeecccccceEEEEecCCcEEEEEECCCCCeEEEeccCCeEE
Q psy12697        521 HSAPALDVDWQSNTSFASCSTDQHIHVCKL-HSDKPVKSFEGHTTGQLVHSYKGTGGIFEVCWNSRGDKVGASASDGSVF  599 (602)
Q Consensus       521 ~~~~v~~~~~s~~~~l~~~~~d~~i~iw~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~v~  599 (602)
                       ..+...+++|..|.||. +....|.||.= -.+..      + ...+.-.....++|..|.|.|-...|-+|...|.-.
T Consensus       334 -p~~a~~ls~SqkglLA~-~~G~~v~iw~d~~~~s~------~-~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~~G~ts  404 (545)
T KOG1272|consen  334 -PHPASNLSLSQKGLLAL-SYGDHVQIWKDALKGSG------H-GETPYMNHRCGGPVEDLRFCPYEDVLGIGHAGGITS  404 (545)
T ss_pred             -CCCccccccccccceee-ecCCeeeeehhhhcCCC------C-CCcchhhhccCcccccceeccHHHeeeccccCCcee
Confidence             45678899998875554 45557999952 12110      0 001111111246899999999999998888877554


Q ss_pred             ee
Q psy12697        600 KN  601 (602)
Q Consensus       600 i~  601 (602)
                      |-
T Consensus       405 il  406 (545)
T KOG1272|consen  405 IL  406 (545)
T ss_pred             Ee
Confidence            43

>KOG2139|consensus

Probab=99.73  E-value=5.3e-15  Score=129.17  Aligned_cols=251  Identities=22%  Similarity=0.362  Sum_probs=167.6

Q ss_pred             CceEEEEECCCCCeEEEeeCCceEEEEecCCceeEEEeeccCceEEEEeCCCCCCCCCCCCccccccccccCCcceEeeC
Q psy12697        141 EPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKGTGGIFEVCWNSRGTPPNPPESMEVDASIEIPQSKATKLIG  220 (602)
Q Consensus       141 ~~V~~~~~s~d~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  220 (602)
                      -.+..++|++.-..+|++..|..|++||-.+ +....++                                       ..
T Consensus        99 ~dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lk---------------------------------------s~  138 (445)
T KOG2139|consen   99 IDLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLK---------------------------------------SV  138 (445)
T ss_pred             cceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceec---------------------------------------ch
Confidence            4567789998777889999999999999765 3332222                                       12


Q ss_pred             CCcceEEEEEcCCC-CEEEEeeCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEeeCCCCCeEEEEe
Q psy12697        221 HESEVFICAWNPVK-DFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFLATGS  299 (602)
Q Consensus       221 h~~~v~~~~~~~~~-~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  299 (602)
                      ....|++++|-|.+ +.|+.|+. +-|.+|............ .....+.  ......+...+|+++.|++||..+++++
T Consensus       139 sQrnvtclawRPlsaselavgCr-~gIciW~~s~tln~~r~~-~~~s~~~--~qvl~~pgh~pVtsmqwn~dgt~l~tAS  214 (445)
T KOG2139|consen  139 SQRNVTCLAWRPLSASELAVGCR-AGICIWSDSRTLNANRNI-RMMSTHH--LQVLQDPGHNPVTSMQWNEDGTILVTAS  214 (445)
T ss_pred             hhcceeEEEeccCCcceeeeeec-ceeEEEEcCccccccccc-ccccccc--hhheeCCCCceeeEEEEcCCCCEEeecc
Confidence            35679999999976 66777776 459999876433221110 0000000  0011123347899999999999999987


Q ss_pred             C-CCeEEEEcCCCcceeecc-cccCCeEEEEEccCCCEEEEEecCCcEEEEeCCCCceeEEeeeccCCeeeeeccCCCeE
Q psy12697        300 Y-DGYARIWTSDGSLKSTLG-QHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTSF  377 (602)
Q Consensus       300 ~-dg~i~i~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  377 (602)
                      . +..|.+||.+......+. ...+.+.-+.||||+.+|++++-|+..++|+..............+.+...+|+|.+.+
T Consensus       215 ~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsf  294 (445)
T KOG2139|consen  215 FGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSF  294 (445)
T ss_pred             cCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEecccceeeeehhcccceecceeccCCceeeeeecCCCCE
Confidence            6 468999998854444443 55677899999999999999999999999965444333344445568999999999875


Q ss_pred             EEeeCCCeEEEEEcCCCc---------------eeeEec-----c----CCCCeEEEEECCCCCEEEEEECCCe------
Q psy12697        378 ASCSTDQHIHVCKLHSDK---------------PVKSFE-----G----HTNEVNAIKWDPQGLLLASCSDDMT------  427 (602)
Q Consensus       378 ~~~~~~~~i~i~d~~~~~---------------~~~~~~-----~----~~~~i~~~~~~~~~~~l~~~~~dg~------  427 (602)
                      +.-...|.-.+|.+.-..               ++..+.     .    -.+++.+++|+|.|.+||+.-..+.      
T Consensus       295 LLf~~sgsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k  374 (445)
T KOG2139|consen  295 LLFACSGSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCK  374 (445)
T ss_pred             EEEEEcCCceEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhh
Confidence            544444444454442110               011111     1    2467899999999999999865443      


Q ss_pred             --EEEEeCCC
Q psy12697        428 --LKIWSLDK  435 (602)
Q Consensus       428 --i~iwd~~~  435 (602)
                        |.+||.+.
T Consensus       375 ~~i~~fdtr~  384 (445)
T KOG2139|consen  375 LHISRFDTRK  384 (445)
T ss_pred             hhhhhhcccc
Confidence              56676654

>KOG2111|consensus

Probab=99.72  E-value=5.1e-15  Score=127.22  Aligned_cols=232  Identities=10%  Similarity=0.121  Sum_probs=164.8

Q ss_pred             CeEEEEEccCCCEEEEEecCCcEEEEeCCCCceeEEeeecc--CCeeeeeccCCCeEEEeeCC------CeEEEEEcCCC
Q psy12697        323 PIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHS--APALDVDWQSNTSFASCSTD------QHIHVCKLHSD  394 (602)
Q Consensus       323 ~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~------~~i~i~d~~~~  394 (602)
                      ...+++|+.|...++++..+| .++|+.+..+.....+...  -.+..+-|..+-..++|+.+      +.+.|||-...
T Consensus         7 ~~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~r~~~~~G~~~veMLfR~N~laLVGGg~~pky~pNkviIWDD~k~   85 (346)
T KOG2111|consen    7 KTLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESASRQFIDGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWDDLKE   85 (346)
T ss_pred             ceeEEEEccCCceEEEEecCc-eEEEecCchhhhhhhccccCchhhhhHhhhhceEEEecCCCCCCCCCceEEEEecccC
Confidence            455699999999898888766 8999987644433222222  23344445555555566544      57999997777


Q ss_pred             ceeeEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEeCC-CCeeeEeeccccccEEEEEECCCCCCCCCCCcceeeeee
Q psy12697        395 KPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLD-KDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILK  473 (602)
Q Consensus       395 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~  473 (602)
                      +++.++. ...+|.++.++++  .|++. .++.|++|... +.+.++.+.....+                         
T Consensus        86 ~~i~el~-f~~~I~~V~l~r~--riVvv-l~~~I~VytF~~n~k~l~~~et~~NP-------------------------  136 (346)
T KOG2111|consen   86 RCIIELS-FNSEIKAVKLRRD--RIVVV-LENKIYVYTFPDNPKLLHVIETRSNP-------------------------  136 (346)
T ss_pred             cEEEEEE-eccceeeEEEcCC--eEEEE-ecCeEEEEEcCCChhheeeeecccCC-------------------------
Confidence            7877776 6778999999877  45554 35789999987 44555544322211                         


Q ss_pred             eccCCccCCeEEEEEccCCCEEEE-EeCCCeEEEEeCCCCce--eeeecccCCCeeEeeecCCc-eEEEeeCCCc-EEEe
Q psy12697        474 STLGQHKGPIFALKWNKRGNYILS-AGVDKTTIIWDAASGQC--EQQFSFHSAPALDVDWQSNT-SFASCSTDQH-IHVC  548 (602)
Q Consensus       474 ~~~~~~~~~v~~i~~s~~~~~l~s-~~~dg~i~iwd~~~~~~--~~~~~~~~~~v~~~~~s~~~-~l~~~~~d~~-i~iw  548 (602)
                             ....+++-..+..+||. |-.-|.|+|-|+...+.  ...+.+|.+.|.+++.+-+| .+|+++..|+ ||||
T Consensus       137 -------kGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIF  209 (346)
T KOG2111|consen  137 -------KGLCSLCPTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIF  209 (346)
T ss_pred             -------CceEeecCCCCceEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEE
Confidence                   11112222223334554 33468999999986655  47788999999999999999 9999999998 7999


Q ss_pred             ecCCCCceeeeecccccceEEEEecCCcEEEEEECCCCCeEEEeccCCeEEe
Q psy12697        549 KLHSDKPVKSFEGHTTGQLVHSYKGTGGIFEVCWNSRGDKVGASASDGSVFK  600 (602)
Q Consensus       549 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~v~i  600 (602)
                      |..+|.++..++.-.         .+..|.+++||||+.+||++++.|++.|
T Consensus       210 dt~~g~~l~E~RRG~---------d~A~iy~iaFSp~~s~LavsSdKgTlHi  252 (346)
T KOG2111|consen  210 DTEDGTLLQELRRGV---------DRADIYCIAFSPNSSWLAVSSDKGTLHI  252 (346)
T ss_pred             EcCCCcEeeeeecCC---------chheEEEEEeCCCccEEEEEcCCCeEEE
Confidence            998888887765432         2467999999999999999999999987

>KOG2111|consensus

Probab=99.72  E-value=3.9e-14  Score=121.90  Aligned_cols=236  Identities=14%  Similarity=0.245  Sum_probs=163.3

Q ss_pred             ceEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEeeCCCCCeEE-EEeCC-
Q psy12697        224 EVFICAWNPVKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFLA-TGSYD-  301 (602)
Q Consensus       224 ~v~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~d-  301 (602)
                      ....++|+.|...++.+..+| .+||+.+--+........              ...-.+.-+-|-  .++++ +|+.+ 
T Consensus         7 ~~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~r~~~--------------~~G~~~veMLfR--~N~laLVGGg~~   69 (346)
T KOG2111|consen    7 KTLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESASRQFI--------------DGGFKIVEMLFR--SNYLALVGGGSR   69 (346)
T ss_pred             ceeEEEEccCCceEEEEecCc-eEEEecCchhhhhhhccc--------------cCchhhhhHhhh--hceEEEecCCCC
Confidence            445599999999999888777 799998753321111100              000112222221  22333 33333 


Q ss_pred             -----CeEEEEcCC-CcceeecccccCCeEEEEEccCCCEEEEEecCCcEEEEeCC-CCceeEEeeecc--CCeeeeecc
Q psy12697        302 -----GYARIWTSD-GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAA-SGQCEQQFSFHS--APALDVDWQ  372 (602)
Q Consensus       302 -----g~i~i~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~-~~~~~~~~~~~~--~~~~~~~~~  372 (602)
                           ..+.|||-. ...+..+ ....+|.++.+.++  .|++.- ++.|.+|... +.+.+..+....  ....+++-.
T Consensus        70 pky~pNkviIWDD~k~~~i~el-~f~~~I~~V~l~r~--riVvvl-~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~  145 (346)
T KOG2111|consen   70 PKYPPNKVIIWDDLKERCIIEL-SFNSEIKAVKLRRD--RIVVVL-ENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPT  145 (346)
T ss_pred             CCCCCceEEEEecccCcEEEEE-EeccceeeEEEcCC--eEEEEe-cCeEEEEEcCCChhheeeeecccCCCceEeecCC
Confidence                 479999943 3334333 46788999999876  455554 6789999987 445555554333  334444444


Q ss_pred             CCCeEEE--eeCCCeEEEEEcCCCce--eeEeccCCCCeEEEEECCCCCEEEEEECCCe-EEEEeCCCCeeeEeeccccc
Q psy12697        373 SNTSFAS--CSTDQHIHVCKLHSDKP--VKSFEGHTNEVNAIKWDPQGLLLASCSDDMT-LKIWSLDKDNCVHDLQAHNK  447 (602)
Q Consensus       373 ~~~~~~~--~~~~~~i~i~d~~~~~~--~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~-i~iwd~~~~~~~~~~~~~~~  447 (602)
                      .+..+++  |-.-|.|++-|+...+.  ...+.+|...|.|++++-+|.++||+|..|+ |||||..+++.+.+++... 
T Consensus       146 ~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~-  224 (346)
T KOG2111|consen  146 SNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGV-  224 (346)
T ss_pred             CCceEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCC-
Confidence            4444443  34569999999987765  5788999999999999999999999999997 8999999999998876422 


Q ss_pred             cEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCC
Q psy12697        448 EIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASG  512 (602)
Q Consensus       448 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~~~~  512 (602)
                                                     ....|.+++|||++.+|+++++.|+|.|+.++..
T Consensus       225 -------------------------------d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~  258 (346)
T KOG2111|consen  225 -------------------------------DRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRDT  258 (346)
T ss_pred             -------------------------------chheEEEEEeCCCccEEEEEcCCCeEEEEEeecC
Confidence                                           3456788888889999999999999999988653

>KOG2139|consensus

Probab=99.72  E-value=1e-14  Score=127.38  Aligned_cols=300  Identities=18%  Similarity=0.259  Sum_probs=188.8

Q ss_pred             CcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEeeCCC-CCeEEEEeC
Q psy12697        222 ESEVFICAWNPVKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNN-GSFLATGSY  300 (602)
Q Consensus       222 ~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~  300 (602)
                      +..+..++|++.-..++++..|-.|++|+-...... .      +.         ......|+|++|-|. ++.|++|+.
T Consensus        98 ~~dlr~~aWhqH~~~fava~nddvVriy~ksst~pt-~------Lk---------s~sQrnvtclawRPlsaselavgCr  161 (445)
T KOG2139|consen   98 EIDLRGVAWHQHIIAFAVATNDDVVRIYDKSSTCPT-K------LK---------SVSQRNVTCLAWRPLSASELAVGCR  161 (445)
T ss_pred             hcceeeEeechhhhhhhhhccCcEEEEeccCCCCCc-e------ec---------chhhcceeEEEeccCCcceeeeeec
Confidence            445778999997778899999999999987662211 1      00         112578999999994 567888887


Q ss_pred             CCeEEEEcCCCcce---------------eecccccCCeEEEEEccCCCEEEEEec-CCcEEEEeCCCCceeEEeeeccC
Q psy12697        301 DGYARIWTSDGSLK---------------STLGQHKGPIFALKWNKRGNYILSAGV-DKTTIIWDAASGQCEQQFSFHSA  364 (602)
Q Consensus       301 dg~i~i~~~~~~~~---------------~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~i~~wd~~~~~~~~~~~~~~~  364 (602)
                      .| |.+|..+....               ..-.+| .+|++++|.+||..+++++. |..|.+||..++..+.......+
T Consensus       162 ~g-IciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glg  239 (445)
T KOG2139|consen  162 AG-ICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLG  239 (445)
T ss_pred             ce-eEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCC
Confidence            65 88997542111               112233 68999999999999998875 67899999999988777666777


Q ss_pred             CeeeeeccCCCe-EEEeeCCCeEEEEEcCCCceeeEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeeeEeec
Q psy12697        365 PALDVDWQSNTS-FASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHDLQ  443 (602)
Q Consensus       365 ~~~~~~~~~~~~-~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  443 (602)
                      .+.-+.|+|++. ++++.-|+..++|.............-.+.|...+|+|+|++|+.... |.-++|.+.....-..+.
T Consensus       240 g~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~s-gsp~lysl~f~~~~~~~~  318 (445)
T KOG2139|consen  240 GFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACS-GSPRLYSLTFDGEDSVFL  318 (445)
T ss_pred             ceeeEEEcCCCCEEEEecccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEc-CCceEEEEeecCCCcccc
Confidence            888999999854 778889999999976554333333334458999999999988765544 334555543211111111


Q ss_pred             cccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCCC--------eEEEEeCCCCcee
Q psy12697        444 AHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDK--------TTIIWDAASGQCE  515 (602)
Q Consensus       444 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg--------~i~iwd~~~~~~~  515 (602)
                      . ...+..+..--|-+....         .....--.+++.+++|.|.|.|||+.-..+        .|.+||....-.+
T Consensus       319 ~-~~~~k~~lliaDL~e~ti---------~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~v  388 (445)
T KOG2139|consen  319 R-PQSIKRVLLIADLQEVTI---------CAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPV  388 (445)
T ss_pred             C-cccceeeeeeccchhhhh---------hcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCce
Confidence            1 111111111101000000         000111257788999999999999876543        3677776643332


Q ss_pred             eeec-c--cCCCeeEeeecC---Cc-eEEEeeCCCcEEEeec
Q psy12697        516 QQFS-F--HSAPALDVDWQS---NT-SFASCSTDQHIHVCKL  550 (602)
Q Consensus       516 ~~~~-~--~~~~v~~~~~s~---~~-~l~~~~~d~~i~iw~~  550 (602)
                      .-.. +  ....-..++|+|   ++ .|..+=..|.+.-|++
T Consensus       389 els~cg~i~ge~P~~IsF~pl~n~g~lLsiaWsTGriq~ypl  430 (445)
T KOG2139|consen  389 ELSYCGMIGGEYPAYISFGPLKNEGRLLSIAWSTGRIQRYPL  430 (445)
T ss_pred             EEEecccccCCCCceEEeeecccCCcEEEEEeccCceEeeee
Confidence            2110 1  111233455554   34 5555556677777765

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.70  E-value=8.7e-14  Score=132.05  Aligned_cols=313  Identities=10%  Similarity=0.071  Sum_probs=194.4

Q ss_pred             EEEeeCCceEEEEecCCceeEEEeeccCceEEEEeCCCCCCCCCCCCccccccccccCCcceEeeCCCcceEEEEEcCCC
Q psy12697        155 LASGSFDKCVHIWSARTGQLVHSYKGTGGIFEVCWNSRGTPPNPPESMEVDASIEIPQSKATKLIGHESEVFICAWNPVK  234 (602)
Q Consensus       155 l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~  234 (602)
                      +++-..++.|.|.|..+.+.+..++.                                        ....-..+.|+||+
T Consensus         9 ~V~~~~~~~v~viD~~t~~~~~~i~~----------------------------------------~~~~h~~~~~s~Dg   48 (369)
T PF02239_consen    9 YVVERGSGSVAVIDGATNKVVARIPT----------------------------------------GGAPHAGLKFSPDG   48 (369)
T ss_dssp             EEEEGGGTEEEEEETTT-SEEEEEE-----------------------------------------STTEEEEEE-TT-S
T ss_pred             EEEecCCCEEEEEECCCCeEEEEEcC----------------------------------------CCCceeEEEecCCC
Confidence            34556789999999999998876653                                        22223446799999


Q ss_pred             CEEEEeeCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEeeCCCCCeEEEEe-CCCeEEEEcCC-Cc
Q psy12697        235 DFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFLATGS-YDGYARIWTSD-GS  312 (602)
Q Consensus       235 ~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~~~~-~~  312 (602)
                      +++++++.||.|.++|+.+.+.....                 ........+++++||++++++. ..+.+.++|.+ .+
T Consensus        49 r~~yv~~rdg~vsviD~~~~~~v~~i-----------------~~G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle  111 (369)
T PF02239_consen   49 RYLYVANRDGTVSVIDLATGKVVATI-----------------KVGGNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLE  111 (369)
T ss_dssp             SEEEEEETTSEEEEEETTSSSEEEEE-----------------E-SSEEEEEEE--TTTEEEEEEEETTEEEEEETTT--
T ss_pred             CEEEEEcCCCeEEEEECCcccEEEEE-----------------ecCCCcceEEEcCCCCEEEEEecCCCceeEecccccc
Confidence            99999999999999999987643211                 1135678899999999998776 57999999965 44


Q ss_pred             ceeeccc-------ccCCeEEEEEccCCCEEEEEec-CCcEEEEeCCCCceeEE-eeeccCCeeeeeccCCCeE--EEee
Q psy12697        313 LKSTLGQ-------HKGPIFALKWNKRGNYILSAGV-DKTTIIWDAASGQCEQQ-FSFHSAPALDVDWQSNTSF--ASCS  381 (602)
Q Consensus       313 ~~~~~~~-------~~~~i~~~~~~~~~~~l~~~~~-dg~i~~wd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~--~~~~  381 (602)
                      .+..+..       ....+..+..+|....++..-. .+.|.+.|....+.+.. ............|.+++++  ++..
T Consensus       112 ~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~  191 (369)
T PF02239_consen  112 PVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAAN  191 (369)
T ss_dssp             EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEG
T ss_pred             ceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeecccccccccccCcccceeeeccc
Confidence            5554432       2346778888888886665544 48888888777654432 2223455677889998753  3345


Q ss_pred             CCCeEEEEEcCCCceeeEecc----CCCCeEEEEECCC----------CCEEEEEECCCeEEEEeCCCCeeeEeeccccc
Q psy12697        382 TDQHIHVCKLHSDKPVKSFEG----HTNEVNAIKWDPQ----------GLLLASCSDDMTLKIWSLDKDNCVHDLQAHNK  447 (602)
Q Consensus       382 ~~~~i~i~d~~~~~~~~~~~~----~~~~i~~~~~~~~----------~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~  447 (602)
                      .++.|.++|..+++.+..+..    |..+...+ .+|.          +...++.-..+.+.+||..+.+.++++.....
T Consensus       192 ~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~-php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~  270 (369)
T PF02239_consen  192 GSNKIAVIDTKTGKLVALIDTGKKPHPGPGANF-PHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGG  270 (369)
T ss_dssp             GGTEEEEEETTTTEEEEEEE-SSSBEETTEEEE-EETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSS
T ss_pred             ccceeEEEeeccceEEEEeeccccccccccccc-cCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEECCCC
Confidence            677999999999877665532    33333333 2222          22222222223456788777777777765433


Q ss_pred             cEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEE----eCCCeEEEEeCCCCceeeeecccC-
Q psy12697        448 EIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSA----GVDKTTIIWDAASGQCEQQFSFHS-  522 (602)
Q Consensus       448 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~----~~dg~i~iwd~~~~~~~~~~~~~~-  522 (602)
                      .                                   .-+..+|+++++.+.    ...+.|.++|.++.+.+..+.... 
T Consensus       271 g-----------------------------------lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~  315 (369)
T PF02239_consen  271 G-----------------------------------LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPG  315 (369)
T ss_dssp             S-------------------------------------EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT
T ss_pred             c-----------------------------------ceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCC
Confidence            3                                   345556788888887    445899999999998887776333 


Q ss_pred             CCeeEeeecCCc-e-EEEeeCC-CcEEEeecCCCCceeeee
Q psy12697        523 APALDVDWQSNT-S-FASCSTD-QHIHVCKLHSDKPVKSFE  560 (602)
Q Consensus       523 ~~v~~~~~s~~~-~-l~~~~~d-~~i~iw~~~~~~~~~~~~  560 (602)
                      ..+..+.|++|| . +++.-.. +.|.|||..+.+.+..++
T Consensus       316 ~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~~~~~i~  356 (369)
T PF02239_consen  316 KRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTLKEKKRIP  356 (369)
T ss_dssp             --EEEEEE-TTSSEEEEEEE--TTEEEEEETTTTEEEEEEE
T ss_pred             CcEeccEECCCCCEEEEEEecCCCEEEEEECCCcEEEEEEE
Confidence            358899999999 3 3444333 379999988887776665

...

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=99.70  E-value=5e-14  Score=128.88  Aligned_cols=356  Identities=15%  Similarity=0.217  Sum_probs=233.5

Q ss_pred             eeecccceeeeeeeccCCceEEEEECCCCCeEEEeeCCceEEEEecCCceeEEEeeccCceEEEEeCCCCCCCCCCCCcc
Q psy12697        124 LWDVERGECLNTLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKGTGGIFEVCWNSRGTPPNPPESME  203 (602)
Q Consensus       124 vwd~~~~~~~~~l~~h~~~V~~~~~s~d~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (602)
                      .|+..+...-..+..-.-++..+++||.|++|++....+ |.+|.-..+..+..+.                        
T Consensus        16 f~~~~s~~~~~~~~~~~~p~~~~~~SP~G~~l~~~~~~~-V~~~~g~~~~~l~~~~------------------------   70 (561)
T COG5354          16 FWNSQSEVIHTRFESENWPVAYVSESPLGTYLFSEHAAG-VECWGGPSKAKLVRFR------------------------   70 (561)
T ss_pred             eecCccccccccccccCcchhheeecCcchheehhhccc-eEEccccchhheeeee------------------------
Confidence            455555555555555777899999999999999876544 8899887776554443                        


Q ss_pred             ccccccccCCcceEeeCCCcceEEEEEcCCCCEEEEeeCCC---------------cEEEEeCCCCCCCCCccceEEEEE
Q psy12697        204 VDASIEIPQSKATKLIGHESEVFICAWNPVKDFLASGSGDS---------------TARIWDMTDSTKKDPKELQIVLRH  268 (602)
Q Consensus       204 ~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg---------------~i~iw~~~~~~~~~~~~~~~~~~~  268 (602)
                                        ...|..+.|+|.+++|.+-+..+               .+.+||+.++..........    
T Consensus        71 ------------------~~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~----  128 (561)
T COG5354          71 ------------------HPDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGIS----  128 (561)
T ss_pred             ------------------cCCceecccCcccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccC----
Confidence                              23466677777777777655433               48899998876543322211    


Q ss_pred             EecCCCcccCCCCcee-EEeeCCCCCeEEEEeCCCeEEEEcCCCccee-eccc-ccCCeEEEEEccCCC--EEEE-----
Q psy12697        269 CISKGGTEVPSNKDVT-SLDWNNNGSFLATGSYDGYARIWTSDGSLKS-TLGQ-HKGPIFALKWNKRGN--YILS-----  338 (602)
Q Consensus       269 ~~~~~~~~~~~~~~i~-~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~-~~~~-~~~~i~~~~~~~~~~--~l~~-----  338 (602)
                                ...... -+.|+-+.+++|-. ....+.++++.+.... .+.. ....|....|+|.++  .|+.     
T Consensus       129 ----------q~~~~Wp~~k~s~~D~y~ARv-v~~sl~i~e~t~n~~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk  197 (561)
T COG5354         129 ----------QPYLGWPVLKFSIDDKYVARV-VGSSLYIHEITDNIEEHPFKNLRPVGILDFSISPEGNHDELAYWTPEK  197 (561)
T ss_pred             ----------Ccccccceeeeeecchhhhhh-ccCeEEEEecCCccccCchhhccccceeeEEecCCCCCceEEEEcccc
Confidence                      011122 56788887776655 4456888886432211 1111 135688888998643  3442     


Q ss_pred             EecCCcEEEEeCCCCceeEEeeeccCCeeeeeccCCCeEEEee------------CCCeEEEEEcCCCceeeEeccCCCC
Q psy12697        339 AGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTSFASCS------------TDQHIHVCKLHSDKPVKSFEGHTNE  406 (602)
Q Consensus       339 ~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~i~i~d~~~~~~~~~~~~~~~~  406 (602)
                      .+.++.+++|.+..+..+.+-......-..+.|.+.+.++.+-            ....++++++........ ..-.++
T Consensus       198 ~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V~-~~~~~p  276 (561)
T COG5354         198 LNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSIPVE-KDLKDP  276 (561)
T ss_pred             CCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeeccccccee-cccccc
Confidence            4567899999999888877777666666777888776533221            235678888874432222 255789


Q ss_pred             eEEEEECCCCCEEEEEE--CCCeEEEEeCCCCeeeEeeccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeE
Q psy12697        407 VNAIKWDPQGLLLASCS--DDMTLKIWSLDKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIF  484 (602)
Q Consensus       407 i~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  484 (602)
                      |...+|.|.++.+++.+  .+-.+.++|++.. ....+.                                    +..=+
T Consensus       277 Vhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~~~P------------------------------------e~~rN  319 (561)
T COG5354         277 VHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LRFYFP------------------------------------EQKRN  319 (561)
T ss_pred             ceeeeecccCCceeEEecccccceeecccccc-eEEecC------------------------------------Ccccc
Confidence            99999999988877765  5778999998864 332221                                    22334


Q ss_pred             EEEEccCCCEEEEEeCC---CeEEEEeCCCCceee-eecccCCCeeEeeecCCc-eEEEee------CCCcEEEeecCCC
Q psy12697        485 ALKWNKRGNYILSAGVD---KTTIIWDAASGQCEQ-QFSFHSAPALDVDWQSNT-SFASCS------TDQHIHVCKLHSD  553 (602)
Q Consensus       485 ~i~~s~~~~~l~s~~~d---g~i~iwd~~~~~~~~-~~~~~~~~v~~~~~s~~~-~l~~~~------~d~~i~iw~~~~~  553 (602)
                      .+.|||.+++++.++.|   |.+.+||........ .+.+.  ...-+.|+||+ ++.+..      .|..|.|||+...
T Consensus       320 T~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~--n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~  397 (561)
T COG5354         320 TIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGL--NTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGA  397 (561)
T ss_pred             cccccCcccEEEEecCCccccceEEeccCCceEEEEEeecC--CceEeeccCCceEEEecCCCcccccCcceEEEEecCc
Confidence            57788899999998876   679999987665443 55533  34556899999 554442      3788999997532


Q ss_pred             CceeeeecccccceEEEEecCCcEEEEEECCCCCeEEEeccCC
Q psy12697        554 KPVKSFEGHTTGQLVHSYKGTGGIFEVCWNSRGDKVGASASDG  596 (602)
Q Consensus       554 ~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg  596 (602)
                      ..                   ...+.+.|.|.|++..+.+.+.
T Consensus       398 ~~-------------------fel~~~~W~p~~~~~ttsSs~~  421 (561)
T COG5354         398 KV-------------------FELTNITWDPSGQYVTTSSSCP  421 (561)
T ss_pred             hh-------------------hhhhhccccCCcccceeeccCC
Confidence            21                   2355677888887776666554

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.68  E-value=1.3e-14  Score=142.32  Aligned_cols=235  Identities=16%  Similarity=0.164  Sum_probs=158.2

Q ss_pred             eccceeeeecccceeeeeeeccCCceEEEEECCCCCeEEEee---CCceEEEEecCCceeEEEeeccCceEEEEeCCCCC
Q psy12697        118 HRLTLPLWDVERGECLNTLTRHTEPVYSVAFSPDGKFLASGS---FDKCVHIWSARTGQLVHSYKGTGGIFEVCWNSRGT  194 (602)
Q Consensus       118 ~~~~i~vwd~~~~~~~~~l~~h~~~V~~~~~s~d~~~l~s~~---~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (602)
                      ....|.+||..... .+.+..+...+.+.+|||||+.|+..+   .+..|.+|++.+|+....                 
T Consensus       177 ~~~~l~~~d~dg~~-~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l-----------------  238 (429)
T PRK03629        177 FPYELRVSDYDGYN-QFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQV-----------------  238 (429)
T ss_pred             cceeEEEEcCCCCC-CEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEc-----------------
Confidence            35689999987554 455566778899999999999998765   245799999988764321                 


Q ss_pred             CCCCCCCccccccccccCCcceEeeCCCcceEEEEEcCCCCEEEEe-eCCC--cEEEEeCCCCCCCCCccceEEEEEEec
Q psy12697        195 PPNPPESMEVDASIEIPQSKATKLIGHESEVFICAWNPVKDFLASG-SGDS--TARIWDMTDSTKKDPKELQIVLRHCIS  271 (602)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~s~-~~dg--~i~iw~~~~~~~~~~~~~~~~~~~~~~  271 (602)
                                              ......+....|+|||+.|+.. +.+|  .|.+||+.++....      .      
T Consensus       239 ------------------------~~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~------l------  282 (429)
T PRK03629        239 ------------------------ASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQ------V------  282 (429)
T ss_pred             ------------------------cCCCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEE------c------
Confidence                                    1112223457999999988765 4444  48888987654211      0      


Q ss_pred             CCCcccCCCCceeEEeeCCCCCeEEEEeCC-C--eEEEEcCCCcceeecccccCCeEEEEEccCCCEEEEEecC---CcE
Q psy12697        272 KGGTEVPSNKDVTSLDWNNNGSFLATGSYD-G--YARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVD---KTT  345 (602)
Q Consensus       272 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-g--~i~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---g~i  345 (602)
                           ......+....|+|||+.|+..+.+ +  .|..++..+.....+...........|+|+|++|+..+.+   ..+
T Consensus       283 -----t~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I  357 (429)
T PRK03629        283 -----TDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHI  357 (429)
T ss_pred             -----cCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEEeecCCCCccCEEECCCCCEEEEEEccCCCceE
Confidence                 0112356788999999988877654 4  4555566655555554444556678999999999876543   358


Q ss_pred             EEEeCCCCceeEEeeeccCCeeeeeccCCCe-EEEeeCCCe---EEEEEcCCCceeeEeccCCCCeEEEEECC
Q psy12697        346 IIWDAASGQCEQQFSFHSAPALDVDWQSNTS-FASCSTDQH---IHVCKLHSDKPVKSFEGHTNEVNAIKWDP  414 (602)
Q Consensus       346 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~---i~i~d~~~~~~~~~~~~~~~~i~~~~~~~  414 (602)
                      .+||+.+++... +.. ........|+|++. ++..+.++.   +.++++ ++.....+.+|.+.+...+|+|
T Consensus       358 ~~~dl~~g~~~~-Lt~-~~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~-~G~~~~~l~~~~~~~~~p~Wsp  427 (429)
T PRK03629        358 AKQDLATGGVQV-LTD-TFLDETPSIAPNGTMVIYSSSQGMGSVLNLVST-DGRFKARLPATDGQVKFPAWSP  427 (429)
T ss_pred             EEEECCCCCeEE-eCC-CCCCCCceECCCCCEEEEEEcCCCceEEEEEEC-CCCCeEECccCCCCcCCcccCC
Confidence            889998886443 221 12234677999876 555555543   677777 4555566777888888899987

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.68  E-value=5.1e-14  Score=138.22  Aligned_cols=232  Identities=13%  Similarity=0.147  Sum_probs=154.2

Q ss_pred             CeEEEEcCCCcceeecccccCCeEEEEEccCCCEEEEEec---CCcEEEEeCCCCceeEEeeeccCCeeeeeccCCCe-E
Q psy12697        302 GYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGV---DKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTS-F  377 (602)
Q Consensus       302 g~i~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  377 (602)
                      ..|.++|.++.....+..+...+...+|+|||+.|+..+.   +..+.+|++.+++..... ..........|+|++. +
T Consensus       179 ~~l~~~d~dg~~~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~-~~~~~~~~~~~SPDG~~L  257 (429)
T PRK03629        179 YELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVA-SFPRHNGAPAFSPDGSKL  257 (429)
T ss_pred             eeEEEEcCCCCCCEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEcc-CCCCCcCCeEECCCCCEE
Confidence            4799999888766666667788999999999999986543   357999999887644322 2233445688999976 4


Q ss_pred             EEe-eCCC--eEEEEEcCCCceeeEeccCCCCeEEEEECCCCCEEEEEECC-CeEEEE--eCCCCeeeEeeccccccEEE
Q psy12697        378 ASC-STDQ--HIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDD-MTLKIW--SLDKDNCVHDLQAHNKEIYT  451 (602)
Q Consensus       378 ~~~-~~~~--~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-g~i~iw--d~~~~~~~~~~~~~~~~i~~  451 (602)
                      +.. ..+|  .|++||+.+++... +..+...+....|+|||+.|+..+.+ +...||  |+.+++. ..+..       
T Consensus       258 a~~~~~~g~~~I~~~d~~tg~~~~-lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~-~~lt~-------  328 (429)
T PRK03629        258 AFALSKTGSLNLYVMDLASGQIRQ-VTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAP-QRITW-------  328 (429)
T ss_pred             EEEEcCCCCcEEEEEECCCCCEEE-ccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCe-EEeec-------
Confidence            333 3344  59999998876543 44444567889999999998877764 444444  5554432 11111       


Q ss_pred             EEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCC---CeEEEEeCCCCceeeeecccCCCeeEe
Q psy12697        452 IKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVD---KTTIIWDAASGQCEQQFSFHSAPALDV  528 (602)
Q Consensus       452 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~v~~~  528 (602)
                                                 +........|+|||++|+..+.+   ..|.+||+.+++... +.. .......
T Consensus       329 ---------------------------~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~-Lt~-~~~~~~p  379 (429)
T PRK03629        329 ---------------------------EGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQV-LTD-TFLDETP  379 (429)
T ss_pred             ---------------------------CCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeEE-eCC-CCCCCCc
Confidence                                       11223457788899998876543   358899998886543 332 1234567


Q ss_pred             eecCCc-eEEEeeCCCc---EEEeecCCCCceeeeecccccceEEEEecCCcEEEEEECC
Q psy12697        529 DWQSNT-SFASCSTDQH---IHVCKLHSDKPVKSFEGHTTGQLVHSYKGTGGIFEVCWNS  584 (602)
Q Consensus       529 ~~s~~~-~l~~~~~d~~---i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp  584 (602)
                      .|+||| .|+.++.++.   +.++++ +++....+.++           .+.+...+|+|
T Consensus       380 ~~SpDG~~i~~~s~~~~~~~l~~~~~-~G~~~~~l~~~-----------~~~~~~p~Wsp  427 (429)
T PRK03629        380 SIAPNGTMVIYSSSQGMGSVLNLVST-DGRFKARLPAT-----------DGQVKFPAWSP  427 (429)
T ss_pred             eECCCCCEEEEEEcCCCceEEEEEEC-CCCCeEECccC-----------CCCcCCcccCC
Confidence            899999 8888887764   666676 33333444333           25678888987

>KOG2321|consensus

Probab=99.67  E-value=1.5e-14  Score=133.91  Aligned_cols=282  Identities=15%  Similarity=0.205  Sum_probs=198.6

Q ss_pred             CCCceeEEeeCCCCCeE-EEEeCCCeEEEEcCCCcceeecccccCCe-EEEEEccCCCEEEEEecCCcEEEEeCCCCcee
Q psy12697        279 SNKDVTSLDWNNNGSFL-ATGSYDGYARIWTSDGSLKSTLGQHKGPI-FALKWNKRGNYILSAGVDKTTIIWDAASGQCE  356 (602)
Q Consensus       279 ~~~~i~~~~~~~~~~~l-~~~~~dg~i~i~~~~~~~~~~~~~~~~~i-~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~  356 (602)
                      +....+.|..+|||+++ ++|...-.|++||+..-.++.-......+ .-.-.+.|-..++.-..|.+|.+.... |...
T Consensus        50 ~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~-G~hy  128 (703)
T KOG2321|consen   50 MPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKY-GRHY  128 (703)
T ss_pred             CccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhc-Ceee
Confidence            45667899999999985 67788899999998765444333333333 333344454555555566666654321 1110


Q ss_pred             EEeeeccCCeeeeeccC-CCeEEEeeCCCeEEEEEcCCCceeeEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEeCCC
Q psy12697        357 QQFSFHSAPALDVDWQS-NTSFASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDK  435 (602)
Q Consensus       357 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~  435 (602)
                       .+. -+....+++++. +..+++++....|+-+++..|.-+..+....+.++++..++...+|++|+.+|.|..||.+.
T Consensus       129 -~~R-IP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~  206 (703)
T KOG2321|consen  129 -RTR-IPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRD  206 (703)
T ss_pred             -eee-cCcCCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecchh
Confidence             000 112233444443 44578888888999999999999988888889999999999999999999999999999998


Q ss_pred             CeeeEeeccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCcee
Q psy12697        436 DNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCE  515 (602)
Q Consensus       436 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~~~~~~~  515 (602)
                      ...+.++..... |.+   .|                   .......|+++.|+.+|-.+++|..+|.+.|||+++.+++
T Consensus       207 ksrv~~l~~~~~-v~s---~p-------------------g~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl  263 (703)
T KOG2321|consen  207 KSRVGTLDAASS-VNS---HP-------------------GGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPL  263 (703)
T ss_pred             hhhheeeecccc-cCC---Cc-------------------cccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCce
Confidence            776666643222 111   00                   1113345899999999999999999999999999998877


Q ss_pred             eeec-ccCCCeeEeeecCCc--eEEEeeCCCcEEEeecCCCCceeeeecccccceEEEEecCCcEEEEEECCCCCeEEEe
Q psy12697        516 QQFS-FHSAPALDVDWQSNT--SFASCSTDQHIHVCKLHSDKPVKSFEGHTTGQLVHSYKGTGGIFEVCWNSRGDKVGAS  592 (602)
Q Consensus       516 ~~~~-~~~~~v~~~~~s~~~--~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~  592 (602)
                      ..-. +..-+|..+.|.+.+  .-+.......++|||-.+|++...++            ....+..+|+-|++.+++++
T Consensus       264 ~~kdh~~e~pi~~l~~~~~~~q~~v~S~Dk~~~kiWd~~~Gk~~asiE------------pt~~lND~C~~p~sGm~f~A  331 (703)
T KOG2321|consen  264 LVKDHGYELPIKKLDWQDTDQQNKVVSMDKRILKIWDECTGKPMASIE------------PTSDLNDFCFVPGSGMFFTA  331 (703)
T ss_pred             eecccCCccceeeecccccCCCceEEecchHHhhhcccccCCceeecc------------ccCCcCceeeecCCceEEEe
Confidence            5443 234478999997764  33344455679999976666655554            33568999999999999999


Q ss_pred             ccCCeE
Q psy12697        593 ASDGSV  598 (602)
Q Consensus       593 ~~dg~v  598 (602)
                      -+++.+
T Consensus       332 ne~~~m  337 (703)
T KOG2321|consen  332 NESSKM  337 (703)
T ss_pred             cCCCcc
Confidence            888754

>KOG2041|consensus

Probab=99.67  E-value=1.2e-13  Score=131.39  Aligned_cols=280  Identities=18%  Similarity=0.323  Sum_probs=196.8

Q ss_pred             CCceEEEEECCCCCeEEEeeCCceEEEEecCCceeEEEeeccCceEEEEeCCCCCCCCCCCCccccccccccCCcceEee
Q psy12697        140 TEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKGTGGIFEVCWNSRGTPPNPPESMEVDASIEIPQSKATKLI  219 (602)
Q Consensus       140 ~~~V~~~~~s~d~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  219 (602)
                      .....|++|+....|+|.|+.||.++|-.+.+...-...++               +....          .-.-.+++.
T Consensus        14 nvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~g---------------laa~s----------nLsmNQtLe   68 (1189)
T KOG2041|consen   14 NVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSG---------------LAAAS----------NLSMNQTLE   68 (1189)
T ss_pred             CceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccc---------------ccccc----------ccchhhhhc
Confidence            34578999999999999999999999998876432211111               00000          011126788


Q ss_pred             CCCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEeeCCCCCeEEEEe
Q psy12697        220 GHESEVFICAWNPVKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFLATGS  299 (602)
Q Consensus       220 ~h~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  299 (602)
                      ||...|.-+.|+.+...|-+...+|.|.+|-+-.+.-......              ......|.+++|+.+|..++...
T Consensus        69 GH~~sV~vvTWNe~~QKLTtSDt~GlIiVWmlykgsW~EEMiN--------------nRnKSvV~SmsWn~dG~kIcIvY  134 (1189)
T KOG2041|consen   69 GHNASVMVVTWNENNQKLTTSDTSGLIIVWMLYKGSWCEEMIN--------------NRNKSVVVSMSWNLDGTKICIVY  134 (1189)
T ss_pred             cCcceEEEEEeccccccccccCCCceEEEEeeecccHHHHHhh--------------CcCccEEEEEEEcCCCcEEEEEE
Confidence            9999999999999999999999999999998866543211100              01235689999999999999999


Q ss_pred             CCCeEEEEcCCCcceeecccccCCeEEEEEccCCCEEEEEecCCcEEEEeCCCCc-------eeEE----eeeccCCeee
Q psy12697        300 YDGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQ-------CEQQ----FSFHSAPALD  368 (602)
Q Consensus       300 ~dg~i~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~-------~~~~----~~~~~~~~~~  368 (602)
                      .||.|.+=.++|..+..-.-.......+.|++|.+.++.+-..|.+.++|.+..-       +.-.    +......+..
T Consensus       135 eDGavIVGsvdGNRIwgKeLkg~~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~  214 (1189)
T KOG2041|consen  135 EDGAVIVGSVDGNRIWGKELKGQLLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAE  214 (1189)
T ss_pred             ccCCEEEEeeccceecchhcchheccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccc
Confidence            9999998888876554332223335588999999999998899999999976431       1111    1112223455


Q ss_pred             eeccC--------C-CeEEEeeCCCeEEEEEcCCCc-eeeEeccCCCCeEEEEECCCCCEEEEEECC---------CeEE
Q psy12697        369 VDWQS--------N-TSFASCSTDQHIHVCKLHSDK-PVKSFEGHTNEVNAIKWDPQGLLLASCSDD---------MTLK  429 (602)
Q Consensus       369 ~~~~~--------~-~~~~~~~~~~~i~i~d~~~~~-~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---------g~i~  429 (602)
                      +.|..        + -.++++..+|.+.+..-.+.. |+..-.  .-.+..+.|+++|..||+++.+         +.|.
T Consensus       215 i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~Pvv~dt--gm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~  292 (1189)
T KOG2041|consen  215 IEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEPVVVDT--GMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVH  292 (1189)
T ss_pred             eeeccCccccCCCCCCEEEEEEcCceehhhhhcCCCCCeEEec--ccEeecceecCCCcEEEEccCcccccCccccceEE
Confidence            55532        2 358999999999887655443 333222  2568899999999999999864         2455


Q ss_pred             EEeCCCCeeeEeeccccccEEEEEECCCCCCC
Q psy12697        430 IWSLDKDNCVHDLQAHNKEIYTIKWSPTGPET  461 (602)
Q Consensus       430 iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  461 (602)
                      +|. .-|+.+.+++.....|+.++|-..+-.+
T Consensus       293 Fys-p~G~i~gtlkvpg~~It~lsWEg~gLri  323 (1189)
T KOG2041|consen  293 FYS-PYGHIVGTLKVPGSCITGLSWEGTGLRI  323 (1189)
T ss_pred             Eec-cchhheEEEecCCceeeeeEEcCCceEE
Confidence            554 4567788888889999999997766443

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.66  E-value=2.3e-14  Score=141.51  Aligned_cols=235  Identities=19%  Similarity=0.193  Sum_probs=156.5

Q ss_pred             eccceeeeecccceeeeeeeccCCceEEEEECCCCCeEEEeeCC---ceEEEEecCCceeEEEeeccCceEEEEeCCCCC
Q psy12697        118 HRLTLPLWDVERGECLNTLTRHTEPVYSVAFSPDGKFLASGSFD---KCVHIWSARTGQLVHSYKGTGGIFEVCWNSRGT  194 (602)
Q Consensus       118 ~~~~i~vwd~~~~~~~~~l~~h~~~V~~~~~s~d~~~l~s~~~d---~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (602)
                      ...+|.+||.. +...+.+..|...+.+.+|+|||+.|+..+.+   ..|.+||+.+++...                  
T Consensus       182 ~~~~l~i~D~~-g~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~------------------  242 (433)
T PRK04922        182 MRYALQVADSD-GYNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL------------------  242 (433)
T ss_pred             ceEEEEEECCC-CCCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE------------------
Confidence            35689999985 55566777888899999999999999988743   479999998876432                  


Q ss_pred             CCCCCCCccccccccccCCcceEeeCCCcceEEEEEcCCCCEEE-EeeCCC--cEEEEeCCCCCCCCCccceEEEEEEec
Q psy12697        195 PPNPPESMEVDASIEIPQSKATKLIGHESEVFICAWNPVKDFLA-SGSGDS--TARIWDMTDSTKKDPKELQIVLRHCIS  271 (602)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~-s~~~dg--~i~iw~~~~~~~~~~~~~~~~~~~~~~  271 (602)
                                             +..+.......+|+|||+.|+ +.+.+|  .|.+||+.++....      ..     
T Consensus       243 -----------------------l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~~------lt-----  288 (433)
T PRK04922        243 -----------------------VASFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLTR------LT-----  288 (433)
T ss_pred             -----------------------eccCCCCccCceECCCCCEEEEEEeCCCCceEEEEECCCCCeEE------Cc-----
Confidence                                   111233345679999998775 445555  58889987764311      00     


Q ss_pred             CCCcccCCCCceeEEeeCCCCCeEEEEeC-CCe--EEEEcCCCcceeecccccCCeEEEEEccCCCEEEEEecCC---cE
Q psy12697        272 KGGTEVPSNKDVTSLDWNNNGSFLATGSY-DGY--ARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDK---TT  345 (602)
Q Consensus       272 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~--i~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg---~i  345 (602)
                            .+.......+|+|||+.|+..+. +|.  |.++++.+.....+..+.......+|+|+|++|+..+.++   .|
T Consensus       289 ------~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I  362 (433)
T PRK04922        289 ------NHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLTFQGNYNARASVSPDGKKIAMVHGSGGQYRI  362 (433)
T ss_pred             ------cCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEeecCCCCccCEEECCCCCEEEEEECCCCceeE
Confidence                  11223467899999998887764 444  6666766544444433334455789999999998765443   68


Q ss_pred             EEEeCCCCceeEEeeeccCCeeeeeccCCCeE-EEeeC---CCeEEEEEcCCCceeeEeccCCCCeEEEEECC
Q psy12697        346 IIWDAASGQCEQQFSFHSAPALDVDWQSNTSF-ASCST---DQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDP  414 (602)
Q Consensus       346 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~---~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~  414 (602)
                      .+||+.+++.. .+. +........|++++.. +..+.   .+.|+++++.. .....+..+.+.+...+|+|
T Consensus       363 ~v~d~~~g~~~-~Lt-~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g-~~~~~l~~~~g~~~~p~wsp  432 (433)
T PRK04922        363 AVMDLSTGSVR-TLT-PGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTDG-RVRQRLVSADGEVREPAWSP  432 (433)
T ss_pred             EEEECCCCCeE-ECC-CCCCCCCceECCCCCEEEEEEecCCceEEEEEECCC-CceEEcccCCCCCCCCccCC
Confidence            99999887654 332 2223456789998763 33333   24578888854 34555555566677777776

>KOG1240|consensus

Probab=99.66  E-value=2.1e-14  Score=144.60  Aligned_cols=277  Identities=16%  Similarity=0.129  Sum_probs=170.8

Q ss_pred             ccccCCcceEeeCCCcceEEEEEcCCC-CEEEEeeCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEE
Q psy12697        208 IEIPQSKATKLIGHESEVFICAWNPVK-DFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSL  286 (602)
Q Consensus       208 ~~~~~~~~~~l~~h~~~v~~~~~~~~~-~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  286 (602)
                      ++..+..+..+..|...|..++.++.. .++++|+.||+|++|+...-...... .....        ...+....+.++
T Consensus      1034 W~p~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s-~rS~l--------tys~~~sr~~~v 1104 (1431)
T KOG1240|consen 1034 WNPRGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGS-ARSEL--------TYSPEGSRVEKV 1104 (1431)
T ss_pred             CCccceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcce-eeeeE--------EEeccCCceEEE
Confidence            344445566777899999999988766 99999999999999998765433111 11000        011235789999


Q ss_pred             eeCCCCCeEEEEeCCCeEEEEcCCCcceeecccccCCeEEEEEccCCCEEEEEecCCcEEEEeCCCCceeEEeeeccCCe
Q psy12697        287 DWNNNGSFLATGSYDGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPA  366 (602)
Q Consensus       287 ~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~  366 (602)
                      ...+.+..+|+++.||.|++.+++-............+      |+.+      .+|.+  -++         ...    
T Consensus      1105 t~~~~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri------~n~~------~~g~v--v~m---------~a~---- 1157 (1431)
T KOG1240|consen 1105 TMCGNGDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRI------PNLK------KDGVV--VSM---------HAF---- 1157 (1431)
T ss_pred             EeccCCCeEEEEcCCCeEEEEEccccccccceeeeeec------cccc------CCCce--EEe---------ecc----
Confidence            99999999999999999999987632111000000000      0000      01100  000         000    


Q ss_pred             eeeeccCC-CeEEEeeCCCeEEEEEcCCCceeeEe--ccCCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeeeEeec
Q psy12697        367 LDVDWQSN-TSFASCSTDQHIHVCKLHSDKPVKSF--EGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHDLQ  443 (602)
Q Consensus       367 ~~~~~~~~-~~~~~~~~~~~i~i~d~~~~~~~~~~--~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  443 (602)
                         ..... -.++.+...+.|..||++.......+  ....+.|++++.+|.+.++++|+..|.+.+||++-+.++....
T Consensus      1158 ---~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~ 1234 (1431)
T KOG1240|consen 1158 ---TAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWE 1234 (1431)
T ss_pred             ---cccccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeEEEecCCceEEEEecCCceEEEEEeecCceeeccc
Confidence               00001 13455555566666666655433322  3345779999999999999999999999999999887776654


Q ss_pred             c-ccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEe--CCCeEEEEeCCCCceeeeecc
Q psy12697        444 A-HNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAG--VDKTTIIWDAASGQCEQQFSF  520 (602)
Q Consensus       444 ~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~--~dg~i~iwd~~~~~~~~~~~~  520 (602)
                      . +..++..+...|..                               |...+.++++  ..+.|.+|++.+|.+...+..
T Consensus      1235 ~P~~~~i~~v~~~~~~-------------------------------~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~ 1283 (1431)
T KOG1240|consen 1235 HPARAPIRHVWLCPTY-------------------------------PQESVSVSAGSSSNNEVSTWNMETGLRQTVLWA 1283 (1431)
T ss_pred             CcccCCcceEEeeccC-------------------------------CCCceEEEecccCCCceeeeecccCcceEEEEc
Confidence            2 23344444433322                               2334455444  467899999999977666553


Q ss_pred             cC-----------------C---CeeEeeecCCceEEEeeCCCcEEEeecCCCC
Q psy12697        521 HS-----------------A---PALDVDWQSNTSFASCSTDQHIHVCKLHSDK  554 (602)
Q Consensus       521 ~~-----------------~---~v~~~~~s~~~~l~~~~~d~~i~iw~~~~~~  554 (602)
                      ..                 .   .+.+....+.+.+.+|+.|..|+.||....+
T Consensus      1284 s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~ 1337 (1431)
T KOG1240|consen 1284 SDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPE 1337 (1431)
T ss_pred             CCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCcc
Confidence            20                 0   1222222334489999999999999986654

>KOG2321|consensus

Probab=99.65  E-value=5.4e-14  Score=130.35  Aligned_cols=280  Identities=16%  Similarity=0.183  Sum_probs=199.2

Q ss_pred             CCCcceEEEEEcCCCCEEE-EeeCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEeeCCCCCeEEEE
Q psy12697        220 GHESEVFICAWNPVKDFLA-SGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFLATG  298 (602)
Q Consensus       220 ~h~~~v~~~~~~~~~~~l~-s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~  298 (602)
                      .|...-+.|..+|||+|++ +|...-.|++||+.+-.......+.                ...|.-.-.+.|-..++.-
T Consensus        49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlD----------------ae~V~feiLsDD~SK~v~L  112 (703)
T KOG2321|consen   49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLD----------------AEVVDFEILSDDYSKSVFL  112 (703)
T ss_pred             CCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeeccc----------------ccceeEEEeccchhhheEe
Confidence            5677788899999998765 5566788999999865432111111                2334444455566667777


Q ss_pred             eCCCeEEEEcCCCcceeecccccCCeEEEEEccCCCEEEEEecCCcEEEEeCCCCceeEEeeeccCCeeeeeccCC-CeE
Q psy12697        299 SYDGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSN-TSF  377 (602)
Q Consensus       299 ~~dg~i~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  377 (602)
                      ..|..|.+-...|.......  +..-.+++++.-.--|+.++....|.-++++.|..+..+......+.++..++- +.+
T Consensus       113 ~~DR~IefHak~G~hy~~RI--P~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLl  190 (703)
T KOG2321|consen  113 QNDRTIEFHAKYGRHYRTRI--PKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLL  190 (703)
T ss_pred             ecCceeeehhhcCeeeeeec--CcCCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccceE
Confidence            77887777655444332221  122345566543334555666678999999999999999988899999988875 667


Q ss_pred             EEeeCCCeEEEEEcCCCceeeEecc------CCC-----CeEEEEECCCCCEEEEEECCCeEEEEeCCCCeeeEeecccc
Q psy12697        378 ASCSTDQHIHVCKLHSDKPVKSFEG------HTN-----EVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHDLQAHN  446 (602)
Q Consensus       378 ~~~~~~~~i~i~d~~~~~~~~~~~~------~~~-----~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~  446 (602)
                      ++|+.+|.|..||.+....+..+..      |.+     .|+++.|+.+|-.+++|+.+|.+.|||+++.+++..-. |.
T Consensus       191 a~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kd-h~  269 (703)
T KOG2321|consen  191 ACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKD-HG  269 (703)
T ss_pred             EecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecc-cC
Confidence            7777899999999998776655542      222     49999999999999999999999999999887765432 21


Q ss_pred             ccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccC--CCEEEEEeCCCeEEEEeCCCCceeeeecccCCC
Q psy12697        447 KEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKR--GNYILSAGVDKTTIIWDAASGQCEQQFSFHSAP  524 (602)
Q Consensus       447 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~  524 (602)
                                                      ...+|..+.|.+.  ++.+++. ....++|||-.+|+....+. ....
T Consensus       270 --------------------------------~e~pi~~l~~~~~~~q~~v~S~-Dk~~~kiWd~~~Gk~~asiE-pt~~  315 (703)
T KOG2321|consen  270 --------------------------------YELPIKKLDWQDTDQQNKVVSM-DKRILKIWDECTGKPMASIE-PTSD  315 (703)
T ss_pred             --------------------------------CccceeeecccccCCCceEEec-chHHhhhcccccCCceeecc-ccCC
Confidence                                            2234444444332  3445554 45779999999999988887 4455


Q ss_pred             eeEeeecCCc-eEEEeeCCCcEEEeecCC
Q psy12697        525 ALDVDWQSNT-SFASCSTDQHIHVCKLHS  552 (602)
Q Consensus       525 v~~~~~s~~~-~l~~~~~d~~i~iw~~~~  552 (602)
                      +..+|+-|++ +++++..++.+..|=+..
T Consensus       316 lND~C~~p~sGm~f~Ane~~~m~~yyiP~  344 (703)
T KOG2321|consen  316 LNDFCFVPGSGMFFTANESSKMHTYYIPS  344 (703)
T ss_pred             cCceeeecCCceEEEecCCCcceeEEccc
Confidence            9999999998 999999888887776544

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.64  E-value=7.9e-14  Score=137.91  Aligned_cols=233  Identities=17%  Similarity=0.186  Sum_probs=158.2

Q ss_pred             ccceeeeecccceeeeeeeccCCceEEEEECCCCCeEEEeeC---CceEEEEecCCceeEEEeeccCceEEEEeCCCCCC
Q psy12697        119 RLTLPLWDVERGECLNTLTRHTEPVYSVAFSPDGKFLASGSF---DKCVHIWSARTGQLVHSYKGTGGIFEVCWNSRGTP  195 (602)
Q Consensus       119 ~~~i~vwd~~~~~~~~~l~~h~~~V~~~~~s~d~~~l~s~~~---d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (602)
                      ...|.+||. .+...+.+..|...+.+.+|||||+.|+..+.   +..|.+||+.+++...                   
T Consensus       181 ~~~l~~~d~-dg~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~-------------------  240 (435)
T PRK05137        181 IKRLAIMDQ-DGANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQREL-------------------  240 (435)
T ss_pred             ceEEEEECC-CCCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEE-------------------
Confidence            568999998 45566778889999999999999999988764   4689999998876431                   


Q ss_pred             CCCCCCccccccccccCCcceEeeCCCcceEEEEEcCCCCEEE-EeeCCCc--EEEEeCCCCCCCCCccceEEEEEEecC
Q psy12697        196 PNPPESMEVDASIEIPQSKATKLIGHESEVFICAWNPVKDFLA-SGSGDST--ARIWDMTDSTKKDPKELQIVLRHCISK  272 (602)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~-s~~~dg~--i~iw~~~~~~~~~~~~~~~~~~~~~~~  272 (602)
                                            +..+.+.+...+|+|||+.|+ +.+.++.  |.+||+.++....      +       
T Consensus       241 ----------------------l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~------L-------  285 (435)
T PRK05137        241 ----------------------VGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTTTR------L-------  285 (435)
T ss_pred             ----------------------eecCCCcccCcEECCCCCEEEEEEecCCCceEEEEECCCCceEE------c-------
Confidence                                  223445667789999998775 4555655  6666776654211      0       


Q ss_pred             CCcccCCCCceeEEeeCCCCCeEEEEeC-CC--eEEEEcCCCcceeecccccCCeEEEEEccCCCEEEEEecC---CcEE
Q psy12697        273 GGTEVPSNKDVTSLDWNNNGSFLATGSY-DG--YARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVD---KTTI  346 (602)
Q Consensus       273 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg--~i~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---g~i~  346 (602)
                          ..+........|+|||+.|+..+. +|  .|.++|..+.....+..+...+....|+|+|++|+..+.+   ..|.
T Consensus       286 ----t~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~  361 (435)
T PRK05137        286 ----TDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIG  361 (435)
T ss_pred             ----cCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEeecCCCcccCeEECCCCCEEEEEEcCCCceEEE
Confidence                011234567899999999887764 33  6888888876666665555667778999999999876643   3588


Q ss_pred             EEeCCCCceeEEeeeccCCeeeeeccCCCeEE-EeeC-C-----CeEEEEEcCCCceeeEeccCCCCeEEEEECC
Q psy12697        347 IWDAASGQCEQQFSFHSAPALDVDWQSNTSFA-SCST-D-----QHIHVCKLHSDKPVKSFEGHTNEVNAIKWDP  414 (602)
Q Consensus       347 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~-----~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~  414 (602)
                      +||+..+.. ..+.. ...+....|+|++..+ ..+. .     ..++++|+..+.. ..+. ....+...+|+|
T Consensus       362 ~~d~~~~~~-~~lt~-~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~-~~l~-~~~~~~~p~Wsp  432 (435)
T PRK05137        362 VMKPDGSGE-RILTS-GFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNE-REVP-TPGDASDPAWSP  432 (435)
T ss_pred             EEECCCCce-EeccC-CCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCce-EEcc-CCCCccCcccCC
Confidence            888765543 33322 2346678899987643 3222 2     3688888876554 3343 233456667766

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.64  E-value=2.1e-13  Score=134.86  Aligned_cols=232  Identities=13%  Similarity=0.151  Sum_probs=156.2

Q ss_pred             CeEEEEcCCCcceeecccccCCeEEEEEccCCCEEEEEec---CCcEEEEeCCCCceeEEeeeccCCeeeeeccCCCe-E
Q psy12697        302 GYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGV---DKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTS-F  377 (602)
Q Consensus       302 g~i~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  377 (602)
                      ..|.++|.++.....+..+...+...+|+|||+.|+..+.   +..|.+||+.+++.. .+......+....|+|++. +
T Consensus       182 ~~l~~~d~dg~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG~~l  260 (435)
T PRK05137        182 KRLAIMDQDGANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFSPDGRKV  260 (435)
T ss_pred             eEEEEECCCCCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEECCCCCEE
Confidence            4788999988887778888889999999999999987763   468999999888654 3444455677889999875 4


Q ss_pred             E-EeeCCC--eEEEEEcCCCceeeEeccCCCCeEEEEECCCCCEEEEEEC-CC--eEEEEeCCCCeeeEeeccccccEEE
Q psy12697        378 A-SCSTDQ--HIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSD-DM--TLKIWSLDKDNCVHDLQAHNKEIYT  451 (602)
Q Consensus       378 ~-~~~~~~--~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg--~i~iwd~~~~~~~~~~~~~~~~i~~  451 (602)
                      + +.+.++  .|++||+.+++. ..+..+........|+|||+.|+..+. +|  .|.+||+..++.. .+..       
T Consensus       261 a~~~~~~g~~~Iy~~d~~~~~~-~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~-~lt~-------  331 (435)
T PRK05137        261 VMSLSQGGNTDIYTMDLRSGTT-TRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPR-RISF-------  331 (435)
T ss_pred             EEEEecCCCceEEEEECCCCce-EEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeE-Eeec-------
Confidence            3 444444  488889887764 445556666778999999999888774 33  5777776654322 2211       


Q ss_pred             EEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCC---CeEEEEeCCCCceeeeecccCCCeeEe
Q psy12697        452 IKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVD---KTTIIWDAASGQCEQQFSFHSAPALDV  528 (602)
Q Consensus       452 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~v~~~  528 (602)
                                                 +...+....|||||++|+....+   ..|.+||+.++.. ..+. ....+...
T Consensus       332 ---------------------------~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~-~~lt-~~~~~~~p  382 (435)
T PRK05137        332 ---------------------------GGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE-RILT-SGFLVEGP  382 (435)
T ss_pred             ---------------------------CCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCce-Eecc-CCCCCCCC
Confidence                                       11223456788899998876543   3688899865543 3333 23356788


Q ss_pred             eecCCc-eEEEeeCC------CcEEEeecCCCCceeeeecccccceEEEEecCCcEEEEEECCC
Q psy12697        529 DWQSNT-SFASCSTD------QHIHVCKLHSDKPVKSFEGHTTGQLVHSYKGTGGIFEVCWNSR  585 (602)
Q Consensus       529 ~~s~~~-~l~~~~~d------~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd  585 (602)
                      .|+||| .|+..+.+      ..++++++..+.. ..+.            ..+.+...+|+|-
T Consensus       383 ~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~-~~l~------------~~~~~~~p~Wsp~  433 (435)
T PRK05137        383 TWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNE-REVP------------TPGDASDPAWSPL  433 (435)
T ss_pred             eECCCCCEEEEEEccCCCCCcceEEEEECCCCce-EEcc------------CCCCccCcccCCC
Confidence            999999 66554432      2577777654432 2221            2244667788873

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.64  E-value=6.4e-14  Score=137.77  Aligned_cols=237  Identities=19%  Similarity=0.217  Sum_probs=153.9

Q ss_pred             ccceeeeecccceeeeeeeccCCceEEEEECCCCCeEEEeeCC---ceEEEEecCCceeEEEeeccCceEEEEeCCCCCC
Q psy12697        119 RLTLPLWDVERGECLNTLTRHTEPVYSVAFSPDGKFLASGSFD---KCVHIWSARTGQLVHSYKGTGGIFEVCWNSRGTP  195 (602)
Q Consensus       119 ~~~i~vwd~~~~~~~~~l~~h~~~V~~~~~s~d~~~l~s~~~d---~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (602)
                      ...|.+||. +|...+.+..+...+.+.+|||||+.|+..+.+   ..|.+||+.+++....                  
T Consensus       175 ~~~L~~~D~-dG~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l------------------  235 (427)
T PRK02889        175 RYQLQISDA-DGQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVV------------------  235 (427)
T ss_pred             ccEEEEECC-CCCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEe------------------
Confidence            457888887 566666777888899999999999999887643   4699999988865321                  


Q ss_pred             CCCCCCccccccccccCCcceEeeCCCcceEEEEEcCCCCEEE-EeeCCCcEEEEeCCCCCCCCCccceEEEEEEecCCC
Q psy12697        196 PNPPESMEVDASIEIPQSKATKLIGHESEVFICAWNPVKDFLA-SGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGG  274 (602)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~-s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~  274 (602)
                                             ......+...+|+|||+.|+ +.+.++...+|.++.....    ....         
T Consensus       236 -----------------------~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~----~~~l---------  279 (427)
T PRK02889        236 -----------------------ANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSG----LRRL---------  279 (427)
T ss_pred             -----------------------ecCCCCccceEECCCCCEEEEEEccCCCceEEEEECCCCC----cEEC---------
Confidence                                   11233455789999998876 4677888777765432111    0100         


Q ss_pred             cccCCCCceeEEeeCCCCCeEEEEeC-CCeEEEEc--CCCcceeecccccCCeEEEEEccCCCEEEEEecCC---cEEEE
Q psy12697        275 TEVPSNKDVTSLDWNNNGSFLATGSY-DGYARIWT--SDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDK---TTIIW  348 (602)
Q Consensus       275 ~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~i~i~~--~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg---~i~~w  348 (602)
                        ..+........|+|||+.|+..+. +|...+|.  ..+.....+...........|+|+|++|+..+.++   .|.+|
T Consensus       280 --t~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~  357 (427)
T PRK02889        280 --TQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQ  357 (427)
T ss_pred             --CCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEecCCCCcCceEECCCCCEEEEEEccCCcEEEEEE
Confidence              011233466789999998887654 45556664  44443333322333345678999999998776554   69999


Q ss_pred             eCCCCceeEEeeeccCCeeeeeccCCCe-EEEeeC-CC--eEEEEEcCCCceeeEeccCCCCeEEEEECCC
Q psy12697        349 DAASGQCEQQFSFHSAPALDVDWQSNTS-FASCST-DQ--HIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQ  415 (602)
Q Consensus       349 d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~--~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~  415 (602)
                      |+.+++......  ........|+|++. ++..+. .|  .+++.++ ++.....+..+.+.+...+|+|-
T Consensus       358 d~~~g~~~~lt~--~~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~-~g~~~~~l~~~~g~~~~p~wsp~  425 (427)
T PRK02889        358 DLATGQVTALTD--TTRDESPSFAPNGRYILYATQQGGRSVLAAVSS-DGRIKQRLSVQGGDVREPSWGPF  425 (427)
T ss_pred             ECCCCCeEEccC--CCCccCceECCCCCEEEEEEecCCCEEEEEEEC-CCCceEEeecCCCCCCCCccCCC
Confidence            998886543322  22345778999876 333332 33  3666666 35555556666677777788873

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.63  E-value=1.4e-13  Score=135.92  Aligned_cols=232  Identities=15%  Similarity=0.164  Sum_probs=153.1

Q ss_pred             CeEEEEcCCCcceeecccccCCeEEEEEccCCCEEEEEecC---CcEEEEeCCCCceeEEeeeccCCeeeeeccCCCe-E
Q psy12697        302 GYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVD---KTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTS-F  377 (602)
Q Consensus       302 g~i~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---g~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  377 (602)
                      ..|.+||.++.....+..+...+....|+|||+.|+..+.+   ..|.+||+.+++.... ...........|+|++. +
T Consensus       184 ~~l~i~D~~g~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l-~~~~g~~~~~~~SpDG~~l  262 (433)
T PRK04922        184 YALQVADSDGYNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELV-ASFRGINGAPSFSPDGRRL  262 (433)
T ss_pred             EEEEEECCCCCCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEe-ccCCCCccCceECCCCCEE
Confidence            36889998877777777778889999999999999987643   4699999988865432 22334455788999875 4


Q ss_pred             E-EeeCCC--eEEEEEcCCCceeeEeccCCCCeEEEEECCCCCEEEEEEC-CCe--EEEEeCCCCeeeEeeccccccEEE
Q psy12697        378 A-SCSTDQ--HIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSD-DMT--LKIWSLDKDNCVHDLQAHNKEIYT  451 (602)
Q Consensus       378 ~-~~~~~~--~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~--i~iwd~~~~~~~~~~~~~~~~i~~  451 (602)
                      + +.+.+|  .|++||+.+++. ..+..+.......+|+|||+.|+..+. +|.  |.++|+.+++.. .+..       
T Consensus       263 ~~~~s~~g~~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~-~lt~-------  333 (433)
T PRK04922        263 ALTLSRDGNPEIYVMDLGSRQL-TRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAE-RLTF-------  333 (433)
T ss_pred             EEEEeCCCCceEEEEECCCCCe-EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeE-Eeec-------
Confidence            3 334444  699999988764 445555555677899999999888764 444  556666554321 1111       


Q ss_pred             EEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCCC---eEEEEeCCCCceeeeecccCCCeeEe
Q psy12697        452 IKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDK---TTIIWDAASGQCEQQFSFHSAPALDV  528 (602)
Q Consensus       452 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg---~i~iwd~~~~~~~~~~~~~~~~v~~~  528 (602)
                                                 +.......+|||||++|+..+.++   .|.+||+.+++.. .+. +.......
T Consensus       334 ---------------------------~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt-~~~~~~~p  384 (433)
T PRK04922        334 ---------------------------QGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLT-PGSLDESP  384 (433)
T ss_pred             ---------------------------CCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECC-CCCCCCCc
Confidence                                       011223568888999988765443   6999999888765 333 23345567


Q ss_pred             eecCCc-eEEEeeCC---CcEEEeecCCCCceeeeecccccceEEEEecCCcEEEEEECC
Q psy12697        529 DWQSNT-SFASCSTD---QHIHVCKLHSDKPVKSFEGHTTGQLVHSYKGTGGIFEVCWNS  584 (602)
Q Consensus       529 ~~s~~~-~l~~~~~d---~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp  584 (602)
                      .|+||| .++..+.+   +.+.++++..+ ....+..+           .+.+...+|+|
T Consensus       385 ~~spdG~~i~~~s~~~g~~~L~~~~~~g~-~~~~l~~~-----------~g~~~~p~wsp  432 (433)
T PRK04922        385 SFAPNGSMVLYATREGGRGVLAAVSTDGR-VRQRLVSA-----------DGEVREPAWSP  432 (433)
T ss_pred             eECCCCCEEEEEEecCCceEEEEEECCCC-ceEEcccC-----------CCCCCCCccCC
Confidence            999999 66655543   35777776432 22222211           24567778887

>KOG1354|consensus

Probab=99.63  E-value=4e-14  Score=122.94  Aligned_cols=269  Identities=13%  Similarity=0.189  Sum_probs=177.2

Q ss_pred             CCceEEEEECCCCCeEEEeeCCceEEEEecCCcee-----EEEeeccCceEEEEeCCCCCCCCCCCCccccccccccCCc
Q psy12697        140 TEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQL-----VHSYKGTGGIFEVCWNSRGTPPNPPESMEVDASIEIPQSK  214 (602)
Q Consensus       140 ~~~V~~~~~s~d~~~l~s~~~d~~v~iwd~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  214 (602)
                      .+-|.++.|..+|.+||||..+|.|.++.-.....     ...++.+.+-                   .+.        
T Consensus        25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepE-------------------FDY--------   77 (433)
T KOG1354|consen   25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPE-------------------FDY--------   77 (433)
T ss_pred             hcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcc-------------------cch--------
Confidence            45689999999999999999999999996543221     1111111000                   000        


Q ss_pred             ceEeeCCCcceEEEEEcCCC--CEEEEeeCCCcEEEEeCCCCCCCCCc---------------cceEEEE-----EEecC
Q psy12697        215 ATKLIGHESEVFICAWNPVK--DFLASGSGDSTARIWDMTDSTKKDPK---------------ELQIVLR-----HCISK  272 (602)
Q Consensus       215 ~~~l~~h~~~v~~~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~---------------~~~~~~~-----~~~~~  272 (602)
                       ..-..-...|..+.|.+++  ..++..+.|.+|++|.+.........               ..+....     .....
T Consensus        78 -LkSleieEKinkIrw~~~~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~pr  156 (433)
T KOG1354|consen   78 -LKSLEIEEKINKIRWLDDGNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPR  156 (433)
T ss_pred             -hhhhhhhhhhhhceecCCCCccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeee
Confidence             0000124467888998876  56778889999999998765433200               0000000     01111


Q ss_pred             CCcccCCCCceeEEeeCCCCCeEEEEeCCCeEEEEcCC--Ccce--eeccc-----ccCCeEEEEEccC-CCEEEEEecC
Q psy12697        273 GGTEVPSNKDVTSLDWNNNGSFLATGSYDGYARIWTSD--GSLK--STLGQ-----HKGPIFALKWNKR-GNYILSAGVD  342 (602)
Q Consensus       273 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~--~~~~--~~~~~-----~~~~i~~~~~~~~-~~~l~~~~~d  342 (602)
                      ......|.-.|.++.++.|+..++++ .|=.|.+|+++  .+..  ..++.     ...-|++..|+|. .+.++-.+..
T Consensus       157 Rv~aNaHtyhiNSIS~NsD~Et~lSA-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSK  235 (433)
T KOG1354|consen  157 RVYANAHTYHINSISVNSDKETFLSA-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSK  235 (433)
T ss_pred             eeccccceeEeeeeeecCccceEeec-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCC
Confidence            22234567789999999999888875 46679999876  2221  12222     2345888999985 4567778889


Q ss_pred             CcEEEEeCCCCcee----EEeee------------ccCCeeeeeccCCCeEEEeeCCCeEEEEEc-CCCceeeEeccCCC
Q psy12697        343 KTTIIWDAASGQCE----QQFSF------------HSAPALDVDWQSNTSFASCSTDQHIHVCKL-HSDKPVKSFEGHTN  405 (602)
Q Consensus       343 g~i~~wd~~~~~~~----~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~-~~~~~~~~~~~~~~  405 (602)
                      |+|++.|++....-    +.+..            --..|.++.|++++.++..-.--+|.+||+ ...+++.+++-|..
T Consensus       236 GtIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDyltvk~wD~nme~~pv~t~~vh~~  315 (433)
T KOG1354|consen  236 GTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDYLTVKLWDLNMEAKPVETYPVHEY  315 (433)
T ss_pred             CcEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEeccceeEEEeccccCCcceEEeehHh
Confidence            99999999853221    11111            113577889999999888888899999999 56678877776532


Q ss_pred             ------------C---eEEEEECCCCCEEEEEECCCeEEEEeCCCCe
Q psy12697        406 ------------E---VNAIKWDPQGLLLASCSDDMTLKIWSLDKDN  437 (602)
Q Consensus       406 ------------~---i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~  437 (602)
                                  .   =..++|+.++.+++||+....++++++..+.
T Consensus       316 lr~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~gs  362 (433)
T KOG1354|consen  316 LRSKLCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARGS  362 (433)
T ss_pred             HHHHHHHHhhccchhheeEEEEcCCcceEecccccceEEEecCCCCc
Confidence                        1   2347899999999999999999999976553

>KOG2394|consensus

Probab=99.63  E-value=1.3e-14  Score=133.23  Aligned_cols=189  Identities=16%  Similarity=0.172  Sum_probs=131.1

Q ss_pred             eEEEeeCCCeEEEEEcCCCceeeEec----cCCCCeEEEEECCCC-CEEEEEECCCeEEEEeCCCCeeeE--eecccc-c
Q psy12697        376 SFASCSTDQHIHVCKLHSDKPVKSFE----GHTNEVNAIKWDPQG-LLLASCSDDMTLKIWSLDKDNCVH--DLQAHN-K  447 (602)
Q Consensus       376 ~~~~~~~~~~i~i~d~~~~~~~~~~~----~~~~~i~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~--~~~~~~-~  447 (602)
                      .+++|-.-|.+.+.|....+..+.+.    -....++++.|-|.+ ..++.+-.+|.+.+||........  ....+. .
T Consensus       187 dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~  266 (636)
T KOG2394|consen  187 DLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDG  266 (636)
T ss_pred             ceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCC
Confidence            48889999999999977633222121    123579999999944 456666788999999863110000  000000 0


Q ss_pred             cEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeeecccCCCeeE
Q psy12697        448 EIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALD  527 (602)
Q Consensus       448 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~  527 (602)
                      .-..+.-+..         .........+.-.++.|..++|||||++||+.+.||.++|+|..+.+++..++..-+...|
T Consensus       267 ~~f~i~t~ks---------k~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLC  337 (636)
T KOG2394|consen  267 DQFAILTSKS---------KKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLC  337 (636)
T ss_pred             CeeEEeeeec---------cccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEE
Confidence            0000000000         0000001112224568999999999999999999999999999999999888888889999


Q ss_pred             eeecCCc-eEEEeeCCCcEEEeecCCCCceeeeecccccceEEEEecCCcEEEEEECC
Q psy12697        528 VDWQSNT-SFASCSTDQHIHVCKLHSDKPVKSFEGHTTGQLVHSYKGTGGIFEVCWNS  584 (602)
Q Consensus       528 ~~~s~~~-~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp  584 (602)
                      ++||||| +|++|+.|.-|.||.+..++.+..-.+|+.+           |+.|+|+|
T Consensus       338 vcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSW-----------Vs~VaFDp  384 (636)
T KOG2394|consen  338 VCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSW-----------VSVVAFDP  384 (636)
T ss_pred             EEEcCCccEEEecCCcceEEEEEeccceEEEeccccccc-----------eeeEeecc
Confidence            9999999 9999999999999999999999988888844           77777775

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.62  E-value=2.3e-13  Score=133.79  Aligned_cols=233  Identities=12%  Similarity=0.175  Sum_probs=149.5

Q ss_pred             CeEEEEcCCCcceeecccccCCeEEEEEccCCCEEEEEecC---CcEEEEeCCCCceeEEeeeccCCeeeeeccCCCe-E
Q psy12697        302 GYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVD---KTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTS-F  377 (602)
Q Consensus       302 g~i~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---g~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  377 (602)
                      ..|.++|.++.....+..+...+.+.+|+|||+.|+..+.+   ..|.+||+.+++... +...........|+|++. +
T Consensus       176 ~~L~~~D~dG~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SPDG~~l  254 (427)
T PRK02889        176 YQLQISDADGQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSPDGRTL  254 (427)
T ss_pred             cEEEEECCCCCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEE
Confidence            46888888887766676778889999999999999877643   359999999887643 332334556789999875 4


Q ss_pred             E-EeeCCCeEEEE--EcCCCceeeEeccCCCCeEEEEECCCCCEEEEEEC-CCeEEEEeCC--CCeeeEeeccccccEEE
Q psy12697        378 A-SCSTDQHIHVC--KLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSD-DMTLKIWSLD--KDNCVHDLQAHNKEIYT  451 (602)
Q Consensus       378 ~-~~~~~~~i~i~--d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~i~iwd~~--~~~~~~~~~~~~~~i~~  451 (602)
                      + +.+.++...+|  |+..+. ...+..+........|+|||+.|+..+. +|...+|.+.  ++.. ..          
T Consensus       255 a~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~-~~----------  322 (427)
T PRK02889        255 AVALSRDGNSQIYTVNADGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAA-QR----------  322 (427)
T ss_pred             EEEEccCCCceEEEEECCCCC-cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCce-EE----------
Confidence            4 45566665555  555444 4555555555677889999998887664 4566666543  3221 11          


Q ss_pred             EEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCCC---eEEEEeCCCCceeeeecccCCCeeEe
Q psy12697        452 IKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDK---TTIIWDAASGQCEQQFSFHSAPALDV  528 (602)
Q Consensus       452 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg---~i~iwd~~~~~~~~~~~~~~~~v~~~  528 (602)
                      +.+.                        ........|||||++|+..+.++   .|.+||+.+++......  .......
T Consensus       323 lt~~------------------------g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt~--~~~~~~p  376 (427)
T PRK02889        323 VTFT------------------------GSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTALTD--TTRDESP  376 (427)
T ss_pred             EecC------------------------CCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEEccC--CCCccCc
Confidence            1110                        01122467899999998776654   69999999887543322  2334678


Q ss_pred             eecCCc-eEEEeeCCC-c--EEEeecCCCCceeeeecccccceEEEEecCCcEEEEEECCC
Q psy12697        529 DWQSNT-SFASCSTDQ-H--IHVCKLHSDKPVKSFEGHTTGQLVHSYKGTGGIFEVCWNSR  585 (602)
Q Consensus       529 ~~s~~~-~l~~~~~d~-~--i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd  585 (602)
                      .|+||| .|+.++.++ .  +.+.++ +++....+..           ..+.+...+|+|-
T Consensus       377 ~~spdg~~l~~~~~~~g~~~l~~~~~-~g~~~~~l~~-----------~~g~~~~p~wsp~  425 (427)
T PRK02889        377 SFAPNGRYILYATQQGGRSVLAAVSS-DGRIKQRLSV-----------QGGDVREPSWGPF  425 (427)
T ss_pred             eECCCCCEEEEEEecCCCEEEEEEEC-CCCceEEeec-----------CCCCCCCCccCCC
Confidence            999999 666655443 3  444444 2322222221           1356777888874

>KOG1912|consensus

Probab=99.62  E-value=6.7e-13  Score=127.58  Aligned_cols=427  Identities=17%  Similarity=0.202  Sum_probs=245.7

Q ss_pred             ceeccceeeeecccceeeeeeeccCCceEEEEECC---CC-CeEEEeeCCceEEEEecCCceeEEEeeccCceEE-EEeC
Q psy12697        116 EVHRLTLPLWDVERGECLNTLTRHTEPVYSVAFSP---DG-KFLASGSFDKCVHIWSARTGQLVHSYKGTGGIFE-VCWN  190 (602)
Q Consensus       116 ~~~~~~i~vwd~~~~~~~~~l~~h~~~V~~~~~s~---d~-~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~-~~~~  190 (602)
                      .+..+.|.+||...+..+..+..|.++|..++|-+   +. .+|+......+|.+||..+|+.+..+.....+.+ +.+.
T Consensus        85 aD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~D  164 (1062)
T KOG1912|consen   85 ADISGRIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVD  164 (1062)
T ss_pred             ccccCcEEEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeC
Confidence            34568999999999999999999999999999976   34 4777778889999999999998877665544433 5544


Q ss_pred             CCCCCCC-CCCCc---------------cccccccccCC--cceE-----e--eCCCcc---------eEEEEEcCCCCE
Q psy12697        191 SRGTPPN-PPESM---------------EVDASIEIPQS--KATK-----L--IGHESE---------VFICAWNPVKDF  236 (602)
Q Consensus       191 ~~~~~~~-~~~~~---------------~~~~~~~~~~~--~~~~-----l--~~h~~~---------v~~~~~~~~~~~  236 (602)
                      |....-. .....               .....+.+...  ....     .  ..++..         ....+|+|.-+.
T Consensus       165 Pfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn  244 (1062)
T KOG1912|consen  165 PFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRN  244 (1062)
T ss_pred             CCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhc
Confidence            4321110 00000               00111111100  0000     0  001110         113456776655


Q ss_pred             EEEeeCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEeeCCC--CCeEEEEeCCCeEEEE-------
Q psy12697        237 LASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNN--GSFLATGSYDGYARIW-------  307 (602)
Q Consensus       237 l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~dg~i~i~-------  307 (602)
                      ++...-...+.++|++-..+.....+.                .+.+.-+.|-|+  ...|+++..||.+.+|       
T Consensus       245 ~lfi~~prellv~dle~~~~l~vvpie----------------r~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~~~~  308 (1062)
T KOG1912|consen  245 ILFITFPRELLVFDLEYECCLAVVPIE----------------RGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKEEPT  308 (1062)
T ss_pred             eEEEEeccceEEEcchhhceeEEEEec----------------cCCcceeEeccCCCcceEEEEecCCeEEEEEeeccCc
Confidence            555556677888888655443221111                122222333332  2234444444444444       


Q ss_pred             -----------------------------------------------------cCCCcce--------------------
Q psy12697        308 -----------------------------------------------------TSDGSLK--------------------  314 (602)
Q Consensus       308 -----------------------------------------------------~~~~~~~--------------------  314 (602)
                                                                           .+.....                    
T Consensus       309 ~f~~~~~~l~~dl~~Q~~~vr~m~~~rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri~~~~~s~~iel~~pf~f~~~  388 (1062)
T KOG1912|consen  309 EFKKPNASLSMDLGEQVHVVRPMEEFRPVIGASCPSTPSALAVLYSSGDSTFWQLSNGRIHLDYRSSSIELVLPFDFNLS  388 (1062)
T ss_pred             cccccchhhccccccceEEEeechhcccceeecCCCChhhhhhhhhcchhHHHhhhcCCcCcccccccccccccccccCc
Confidence                                                                 3221000                    


Q ss_pred             ------------eecccccCCeEEEEEcc-----------CC-------CEEEEEecCCcEEEEeCCCCceeEEeeeccC
Q psy12697        315 ------------STLGQHKGPIFALKWNK-----------RG-------NYILSAGVDKTTIIWDAASGQCEQQFSFHSA  364 (602)
Q Consensus       315 ------------~~~~~~~~~i~~~~~~~-----------~~-------~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~  364 (602)
                                  ..-.+|.....+....|           .+       ..++.|+..|+|.++|+.++..-..+..|..
T Consensus       389 ~~~v~k~~l~~LS~dg~h~sGs~~~~~~p~p~~t~~~~~p~~n~~~~~~pLvAvGT~sGTV~vvdvst~~v~~~fsvht~  468 (1062)
T KOG1912|consen  389 TKLVGKTSLISLSDDGSHSSGSTCVRMRPMPELTKVENDPGGNTPAGTVPLVAVGTNSGTVDVVDVSTNAVAASFSVHTS  468 (1062)
T ss_pred             eeehhhccccchhhcCCCCCCceeeecccCcccceeecCCCCCccceeeeeEEeecCCceEEEEEecchhhhhhhccccc
Confidence                        00002333333333222           12       2567889999999999999999999999999


Q ss_pred             CeeeeeccCCCeEEEeeC----------CCeEEEEEcCCCcee--eEec-cCCCCeEEEEECCCCCEEEEEECCCeEEEE
Q psy12697        365 PALDVDWQSNTSFASCST----------DQHIHVCKLHSDKPV--KSFE-GHTNEVNAIKWDPQGLLLASCSDDMTLKIW  431 (602)
Q Consensus       365 ~~~~~~~~~~~~~~~~~~----------~~~i~i~d~~~~~~~--~~~~-~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw  431 (602)
                      .|.++.|..+..+++.+.          -+.+.+-|+++|...  +-++ ....+|+.+..+..|+||+..-.|.-+.+|
T Consensus       469 ~VkgleW~g~sslvSfsys~~n~~sg~vrN~l~vtdLrtGlsk~fR~l~~~despI~~irvS~~~~yLai~Fr~~plEiw  548 (1062)
T KOG1912|consen  469 LVKGLEWLGNSSLVSFSYSHVNSASGGVRNDLVVTDLRTGLSKRFRGLQKPDESPIRAIRVSSSGRYLAILFRREPLEIW  548 (1062)
T ss_pred             ceeeeeeccceeEEEeeeccccccccceeeeEEEEEcccccccccccCCCCCcCcceeeeecccCceEEEEecccchHHH
Confidence            999999999988776543          245778899988543  2222 345689999999999999999999999999


Q ss_pred             eCCCCeeeEeeccccccEEEEEEC-CCCCCCCCCCccee-------eee-----------eeccCCccC-----------
Q psy12697        432 SLDKDNCVHDLQAHNKEIYTIKWS-PTGPETSNPNMSLI-------FIL-----------KSTLGQHKG-----------  481 (602)
Q Consensus       432 d~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~~-------~~~-----------~~~~~~~~~-----------  481 (602)
                      |+++..+++.....-.-++.+.|+ |.-+.+........       ...           ........+           
T Consensus       549 d~kt~~~lr~mS~a~P~it~leWsl~~~~si~qk~ls~q~sms~n~vv~ds~es~~~~~~~~a~~~sdgsq~~~a~esfa  628 (1062)
T KOG1912|consen  549 DLKTLRMLRLMSLALPLITVLEWSLPKHPSIKQKELSKQSSMSENLVVLDSVESRIYHITLSALVVSDGSQVNTAWESFA  628 (1062)
T ss_pred             hhccchHHHHHhhcCCcEEEEeecccCCCCcccccchhhhhhhhceeeeccccchheehhhhhhhhccccchhhHHHHHH
Confidence            998877766555444458999998 44333222111110       000           000000011           


Q ss_pred             -CeEEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeee--cccCCCeeEeeecCCc-eEEEeeCCCcEEEeecCCCCcee
Q psy12697        482 -PIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQF--SFHSAPALDVDWQSNT-SFASCSTDQHIHVCKLHSDKPVK  557 (602)
Q Consensus       482 -~v~~i~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~--~~~~~~v~~~~~s~~~-~l~~~~~d~~i~iw~~~~~~~~~  557 (602)
                       .+..++|  .+..++.|..+|.+.+||+...+.....  ..|.......-+-|.. .+++--.| -+-+||.+....+.
T Consensus       629 fal~~mAw--k~d~lv~GD~~GNl~~WDlg~R~SRg~~d~p~~ra~~l~~~~ipG~~~~lvl~~d-~~~lwdtk~~~lV~  705 (1062)
T KOG1912|consen  629 FALCAMAW--KDDILVVGDVEGNLVVWDLGRRQSRGVRDSPDPRAHSLTFPQIPGDHTTLVLELD-WLPLWDTKADTLVL  705 (1062)
T ss_pred             HHHHhhhc--cCCeeEeecccCceeEEecccccccCccCCCCchhhheecccCCCCceEEEEecC-cceecccccceeee
Confidence             1122333  4668999999999999997644332211  1122222233334433 33333333 36667765555555


Q ss_pred             eeec
Q psy12697        558 SFEG  561 (602)
Q Consensus       558 ~~~~  561 (602)
                      .+.+
T Consensus       706 siag  709 (1062)
T KOG1912|consen  706 SIAG  709 (1062)
T ss_pred             eecc
Confidence            5533

>KOG2315|consensus

Probab=99.62  E-value=1.3e-12  Score=121.41  Aligned_cols=300  Identities=12%  Similarity=0.237  Sum_probs=201.6

Q ss_pred             CceeEEeeCCCCCeEEEEeCCCeEEEEcCCCc-ceeecccccCCeEEEEEccCCCEEEEE-----ecC-----CcEEEEe
Q psy12697        281 KDVTSLDWNNNGSFLATGSYDGYARIWTSDGS-LKSTLGQHKGPIFALKWNKRGNYILSA-----GVD-----KTTIIWD  349 (602)
Q Consensus       281 ~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~l~~~-----~~d-----g~i~~wd  349 (602)
                      .++...+++++|++++.+. +..+.|++.... .+.... . ..+.++.|+|.+++|.+=     ..+     -.+.+|+
T Consensus        35 ~~~~v~~~S~~G~lfA~~~-~~~v~i~~~~~~~~~lt~~-~-~~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~  111 (566)
T KOG2315|consen   35 RPCNVFAYSNNGRLFAYSD-NQVVKVFEIATLKVVLCVE-L-KKTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVYN  111 (566)
T ss_pred             CcceeEEEcCCCcEEEEEc-CCeEEEEEccCCcEEEEec-c-ceeeeeeecccccccccccccccccCCCCCCCceeeee
Confidence            3467888999998887754 567888886643 222222 2 278999999999998752     122     3577999


Q ss_pred             CCCCceeEEeeeccCCeeeeeccCCCeEEEeeCCCeEEEEEcCCCceeeEeccCCCCeEEEEECCCC--CEEEE-----E
Q psy12697        350 AASGQCEQQFSFHSAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQG--LLLAS-----C  422 (602)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~--~~l~~-----~  422 (602)
                      ++++.....+......-++..|+.+..+++--..+.+++|+..+.+.+. -.-|...|+.+.+||.+  ..+|+     .
T Consensus       112 vet~~~~s~~q~k~Q~~W~~qfs~dEsl~arlv~nev~f~~~~~f~~~~-~kl~~~~i~~f~lSpgp~~~~vAvyvPe~k  190 (566)
T KOG2315|consen  112 VETGVQRSQIQKKMQNGWVPQFSIDESLAARLVSNEVQFYDLGSFKTIQ-HKLSVSGITMLSLSPGPEPPFVAVYVPEKK  190 (566)
T ss_pred             eccceehhheehhhhcCcccccccchhhhhhhhcceEEEEecCCcccee-eeeeccceeeEEecCCCCCceEEEEccCCC
Confidence            9996666666555555578899999988888888999999998754332 23367789999999863  34443     3


Q ss_pred             ECCCeEEEEeCCCCeeeEeec---cccccEEEEEECCCCCCCC--------------CCCcceeeeeee------ccCCc
Q psy12697        423 SDDMTLKIWSLDKDNCVHDLQ---AHNKEIYTIKWSPTGPETS--------------NPNMSLIFILKS------TLGQH  479 (602)
Q Consensus       423 ~~dg~i~iwd~~~~~~~~~~~---~~~~~i~~~~~~~~~~~~~--------------~~~~~~~~~~~~------~~~~~  479 (602)
                      +.-+.|+||.......-..+.   -....-..+.|.+.+..+.              .+... ...+..      .....
T Consensus       191 GaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~-Lyll~t~g~s~~V~L~k  269 (566)
T KOG2315|consen  191 GAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQT-LYLLATQGESVSVPLLK  269 (566)
T ss_pred             CCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccce-EEEEEecCceEEEecCC
Confidence            455789999876321111110   0111223344554443211              00111 111111      11235


Q ss_pred             cCCeEEEEEccCCCEEEE--EeCCCeEEEEeCCCCceeeeecccCCCeeEeeecCCc-eEEEeeC---CCcEEEeecCCC
Q psy12697        480 KGPIFALKWNKRGNYILS--AGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNT-SFASCST---DQHIHVCKLHSD  553 (602)
Q Consensus       480 ~~~v~~i~~s~~~~~l~s--~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~-~l~~~~~---d~~i~iw~~~~~  553 (602)
                      .++|.++.|+|+|+-+++  |-.-.++.|+|++ +.++..+  ..++-+++-|+|.| +++.+|.   .|.|-|||+.+.
T Consensus       270 ~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df--~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~  346 (566)
T KOG2315|consen  270 EGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDF--PEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNR  346 (566)
T ss_pred             CCCceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeC--CCCCccceEECCCCCEEEEeecCCCCCceEEEeccch
Confidence            799999999999987765  4567889999987 6666555  46788899999999 6666654   478999999998


Q ss_pred             CceeeeecccccceEEEEecCCcEEEEEECCCCCeEEEeccCCeEEee
Q psy12697        554 KPVKSFEGHTTGQLVHSYKGTGGIFEVCWNSRGDKVGASASDGSVFKN  601 (602)
Q Consensus       554 ~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~v~i~  601 (602)
                      +++..+....             -+-+.|+|||.++++++..-.++|+
T Consensus       347 K~i~~~~a~~-------------tt~~eW~PdGe~flTATTaPRlrvd  381 (566)
T KOG2315|consen  347 KLIAKFKAAN-------------TTVFEWSPDGEYFLTATTAPRLRVD  381 (566)
T ss_pred             hhccccccCC-------------ceEEEEcCCCcEEEEEeccccEEec
Confidence            8887776543             4567899999999999887666654

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=99.61  E-value=2.3e-11  Score=128.33  Aligned_cols=399  Identities=16%  Similarity=0.278  Sum_probs=235.8

Q ss_pred             cCCceEEEEECCCCCeEEEeeCCceEEEE----ecCCceeEEEeeccCceEEEEeCCCCCCCCCCCCccccccccccCCc
Q psy12697        139 HTEPVYSVAFSPDGKFLASGSFDKCVHIW----SARTGQLVHSYKGTGGIFEVCWNSRGTPPNPPESMEVDASIEIPQSK  214 (602)
Q Consensus       139 h~~~V~~~~~s~d~~~l~s~~~d~~v~iw----d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  214 (602)
                      ..+.|.++.+-++..-|+.+..+|.|.+.    +..+...-.                                      
T Consensus        74 ~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~E~--------------------------------------  115 (928)
T PF04762_consen   74 PNDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDEIEI--------------------------------------  115 (928)
T ss_pred             CCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCceeEE--------------------------------------
Confidence            45789999999999999999999999998    444332211                                      


Q ss_pred             ceEeeCCCcceEEEEEcCCCCEEEEeeCCCcEEEEeCC----CCCCCCCc---------------cce--EEEEEE----
Q psy12697        215 ATKLIGHESEVFICAWNPVKDFLASGSGDSTARIWDMT----DSTKKDPK---------------ELQ--IVLRHC----  269 (602)
Q Consensus       215 ~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~----~~~~~~~~---------------~~~--~~~~~~----  269 (602)
                         .-.-...|.+++||||+..|+..+.++++.+..-+    ........               +.+  ......    
T Consensus       116 ---VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~  192 (928)
T PF04762_consen  116 ---VGSVDSGILAASWSPDEELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQ  192 (928)
T ss_pred             ---EEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhh
Confidence               11135578889999999999888888887765321    00000000               000  000000    


Q ss_pred             -----ec--CCCcccCCCCceeEEeeCCCCCeEEEEeC---C---CeEEEEcCCCcceeecccccCCeEEEEEccCCCEE
Q psy12697        270 -----IS--KGGTEVPSNKDVTSLDWNNNGSFLATGSY---D---GYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYI  336 (602)
Q Consensus       270 -----~~--~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---d---g~i~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l  336 (602)
                           ..  ..+... ....-..++|-.||.++|+.+.   .   ..+++|+.+|.+..+-..-.+--.+++|.|.|++|
T Consensus       193 ~~~p~~~~~d~~~~s-~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~ReG~L~stSE~v~gLe~~l~WrPsG~lI  271 (928)
T PF04762_consen  193 LRDPTVPKVDEGKLS-WDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSREGELQSTSEPVDGLEGALSWRPSGNLI  271 (928)
T ss_pred             ccCCCCCccccCccc-cCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCCceEEeccccCCCccCCccCCCCCCEE
Confidence                 00  000111 3456778999999999999875   2   47999999988777666555666789999999999


Q ss_pred             EEEec---CCcEEEEeCCCCceeEEeee----ccCCeeeeeccCCCeEEEeeCCCeEEEEEcCCCcee--eEec-cCCCC
Q psy12697        337 LSAGV---DKTTIIWDAASGQCEQQFSF----HSAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKPV--KSFE-GHTNE  406 (602)
Q Consensus       337 ~~~~~---dg~i~~wd~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~--~~~~-~~~~~  406 (602)
                      ++...   ...|.+|. ++|..-..+..    ....+..+.|++++.+++.-....|.+|-..+..--  +.+. .....
T Consensus       272 A~~q~~~~~~~VvFfE-rNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~vqLWt~~NYHWYLKqei~~~~~~~  350 (928)
T PF04762_consen  272 ASSQRLPDRHDVVFFE-RNGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDRVQLWTRSNYHWYLKQEIRFSSSES  350 (928)
T ss_pred             EEEEEcCCCcEEEEEe-cCCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCCceEEEeeCCEEEEEEEEEccCCCC
Confidence            88764   34566676 45554444443    356789999999987666666666999998886522  1222 12234


Q ss_pred             eEEEEECC-CCCEEEEEECCCeEEEEeCCCCe------------eeEeeccccccEEEEEECCCCCCCCCCCcceeeeee
Q psy12697        407 VNAIKWDP-QGLLLASCSDDMTLKIWSLDKDN------------CVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILK  473 (602)
Q Consensus       407 i~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~------------~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~  473 (602)
                      +..+.|+| +...|...+.+|.+..+++.-..            .+..+.+..-.++.+....-.     +.+.      
T Consensus       351 ~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VP-----PPMs------  419 (928)
T PF04762_consen  351 VNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVP-----PPMS------  419 (928)
T ss_pred             CCceEECCCCCCEEEEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCC-----chHh------
Confidence            55699999 45567777777877776653211            111111111111111110000     0000      


Q ss_pred             eccCCccCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCcee--------eeec----------ccCCCeeEeeecCCc-
Q psy12697        474 STLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCE--------QQFS----------FHSAPALDVDWQSNT-  534 (602)
Q Consensus       474 ~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~~~~~~~--------~~~~----------~~~~~v~~~~~s~~~-  534 (602)
                      ...-.-..+|.+++|++++..+++-..||.|.+|........        ..+.          .....+..++|..+. 
T Consensus       420 ~~~l~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  499 (928)
T PF04762_consen  420 SYELELPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDLKNMWSVKPPKLLSSISLDSMDISDSELPLGSLRQLAWLNDDT  499 (928)
T ss_pred             ceEEcCCCCcEEEEEeCCCCeEEEEECCCCEEEEEecCCCcccccCcchhhhcccccccccccccccccEEEEEEeCCCE
Confidence            001123578999999999988999999999999985443211        1111          123356778887777 


Q ss_pred             eEEEeeC---CCcEEEeecCCCCceeeeecccccceEEEEecCCcEEEEEECCCCCeEEEeccCCeEE
Q psy12697        535 SFASCST---DQHIHVCKLHSDKPVKSFEGHTTGQLVHSYKGTGGIFEVCWNSRGDKVGASASDGSVF  599 (602)
Q Consensus       535 ~l~~~~~---d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~v~  599 (602)
                      .++....   ...+.++++...+......        ......+.+..+...++...++.-..+|.+.
T Consensus       500 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~q~~~G~v~  559 (928)
T PF04762_consen  500 LLVLSDSDSNQSKIVLVDIDDSENSASVE--------SSTEVDGVVLIISSSPDSGSLYIQTNDGKVF  559 (928)
T ss_pred             EEEEEecCcccceEEEEEeccCCCceeEE--------EEeccCceEEEEeeCCCCcEEEEEECCCEEE
Confidence            4444444   3678888874432211111        1111234455555555554455555566554

>KOG3881|consensus

Probab=99.61  E-value=1.7e-13  Score=121.25  Aligned_cols=265  Identities=14%  Similarity=0.179  Sum_probs=184.0

Q ss_pred             CCcceEEEEEcCCC--CEEEEeeCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEeeCCCCCeEEEE
Q psy12697        221 HESEVFICAWNPVK--DFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFLATG  298 (602)
Q Consensus       221 h~~~v~~~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~  298 (602)
                      ....|..++|.-++  ..+...+.|..+....+..........-.          .......++|..++...  ..|++|
T Consensus        54 ~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~----------~~~~l~~~~I~gl~~~d--g~Litc  121 (412)
T KOG3881|consen   54 ELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDA----------KTVSLGTKSIKGLKLAD--GTLITC  121 (412)
T ss_pred             hhhhhhhheeecCCceeEeeccccCcccccccccCCccccccccc----------cccccccccccchhhcC--CEEEEE
Confidence            45567778887665  45555657777777777666543221000          00011134555555432  368888


Q ss_pred             eCCCeEEEEcCC-----CcceeecccccCCeEEEEEccCCCEEE-EEecC--CcEEEEeCCCCceeEEeeecc-------
Q psy12697        299 SYDGYARIWTSD-----GSLKSTLGQHKGPIFALKWNKRGNYIL-SAGVD--KTTIIWDAASGQCEQQFSFHS-------  363 (602)
Q Consensus       299 ~~dg~i~i~~~~-----~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~d--g~i~~wd~~~~~~~~~~~~~~-------  363 (602)
                      ..+|.+.+|...     ......+..+ ..+..+.-++...+++ +|+..  ..+.+||++..+.+..-....       
T Consensus       122 ~~sG~l~~~~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~Lr  200 (412)
T KOG3881|consen  122 VSSGNLQVRHDKSGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLR  200 (412)
T ss_pred             ecCCcEEEEeccCCccccccceeeecC-CceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccce
Confidence            999999999876     2333333333 4466666666555554 58888  889999999885544332211       


Q ss_pred             --CCeeeeeccC---CCeEEEeeCCCeEEEEEcCCC-ceeeEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCe
Q psy12697        364 --APALDVDWQS---NTSFASCSTDQHIHVCKLHSD-KPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDN  437 (602)
Q Consensus       364 --~~~~~~~~~~---~~~~~~~~~~~~i~i~d~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~  437 (602)
                        -.++++.|.+   ...|++++.-+.+++||.+.+ +|+..+.--..+++++...|+++++++|..-|.+..||++.++
T Consensus       201 VPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~k  280 (412)
T KOG3881|consen  201 VPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGK  280 (412)
T ss_pred             eeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCce
Confidence              1244555654   467999999999999999865 5888888888999999999999999999999999999999987


Q ss_pred             eeEe-eccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCceee
Q psy12697        438 CVHD-LQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQ  516 (602)
Q Consensus       438 ~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~  516 (602)
                      .... +.+                                  -.+.|.++..+|.+++++++|.|+.|+|+|+.+.+++.
T Consensus       281 l~g~~~kg----------------------------------~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~  326 (412)
T KOG3881|consen  281 LLGCGLKG----------------------------------ITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLH  326 (412)
T ss_pred             eeccccCC----------------------------------ccCCcceEEEcCCCceEEeeccceeEEEeecccchhhh
Confidence            7655 444                                  44556666666778899999999999999999977775


Q ss_pred             eecccCCCeeEeeecCC
Q psy12697        517 QFSFHSAPALDVDWQSN  533 (602)
Q Consensus       517 ~~~~~~~~v~~~~~s~~  533 (602)
                      ... -...++++.+.++
T Consensus       327 kvY-vKs~lt~il~~~~  342 (412)
T KOG3881|consen  327 KVY-VKSRLTFILLRDD  342 (412)
T ss_pred             hhh-hhccccEEEecCC
Confidence            544 2345666666554

>KOG1409|consensus

Probab=99.61  E-value=1.9e-13  Score=118.91  Aligned_cols=246  Identities=21%  Similarity=0.356  Sum_probs=175.8

Q ss_pred             eEeeCCCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEeeCCCCCeE
Q psy12697        216 TKLIGHESEVFICAWNPVKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFL  295 (602)
Q Consensus       216 ~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l  295 (602)
                      ..+.||.+.|+....-|...-+++.+.|.++++|--.+.....+...              .....+++++.+.++...|
T Consensus        18 ~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~--------------~~mP~~~~~~~y~~e~~~L   83 (404)
T KOG1409|consen   18 SKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIY--------------HYMPSPCSAMEYVSESRRL   83 (404)
T ss_pred             hhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhh--------------hhCCCCceEeeeeccceEE
Confidence            56779999999999999999999999999999996544332211100              1124678999999999999


Q ss_pred             EEEeCCCeEEEEcCC-----CcceeecccccCCeEEEEEccCCCEEEEEecCCcEEEEeCCCCceeEEeeeccCCeeeee
Q psy12697        296 ATGSYDGYARIWTSD-----GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVD  370 (602)
Q Consensus       296 ~~~~~dg~i~i~~~~-----~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~  370 (602)
                      ++|-.+|.+.-+.+.     ....+....|...+..+-|+....++++.+.|..+.---.+.+..+..+...... .++.
T Consensus        84 ~vg~~ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~-t~~~  162 (404)
T KOG1409|consen   84 YVGQDNGTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETPA-SALQ  162 (404)
T ss_pred             EEEEecceEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeeccC-CCCc
Confidence            999999999988754     2334455679999999999999999999999987765555555544433321111 1111


Q ss_pred             ccCCCeEEEeeCCCeEEEEEc--CCCceeeEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCee-eEeeccccc
Q psy12697        371 WQSNTSFASCSTDQHIHVCKL--HSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNC-VHDLQAHNK  447 (602)
Q Consensus       371 ~~~~~~~~~~~~~~~i~i~d~--~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~  447 (602)
                      +.-. ...+|...|.|....+  ..-.++.++.+|.+.+.+++|.|..+.|.+|..|..+.+||+.-.+- ...+.+|..
T Consensus       163 ~d~~-~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~  241 (404)
T KOG1409|consen  163 FDAL-YAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHND  241 (404)
T ss_pred             eeeE-EEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchh
Confidence            1111 4456666777776554  44567899999999999999999999999999999999999975433 344555555


Q ss_pred             cEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCCCeEEEEeCCC
Q psy12697        448 EIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAAS  511 (602)
Q Consensus       448 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~~~  511 (602)
                      .+..+...+                                  --+.+.+++.||.|.+||++.
T Consensus       242 kV~~l~~~~----------------------------------~t~~l~S~~edg~i~~w~mn~  271 (404)
T KOG1409|consen  242 KVQALSYAQ----------------------------------HTRQLISCGEDGGIVVWNMNV  271 (404)
T ss_pred             hhhhhhhhh----------------------------------hheeeeeccCCCeEEEEeccc
Confidence            555444333                                  335677777788888887653

>KOG1310|consensus

Probab=99.61  E-value=1.1e-14  Score=134.04  Aligned_cols=221  Identities=22%  Similarity=0.361  Sum_probs=159.1

Q ss_pred             ceeecccccCCeEEEEEccCCCEEEEEecCCcEEEEeCCCCceeEEe-eeccCCeeeeeccC---CCeEEEeeCCCeEEE
Q psy12697        313 LKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQF-SFHSAPALDVDWQS---NTSFASCSTDQHIHV  388 (602)
Q Consensus       313 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~-~~~~~~~~~~~~~~---~~~~~~~~~~~~i~i  388 (602)
                      +...+.+|.+-|.++.|+.+|.+|++|+.|-.+.|||....+.+..+ .+|...|.++.|.|   +..+++|..|..|++
T Consensus        42 lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~l  121 (758)
T KOG1310|consen   42 LEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKL  121 (758)
T ss_pred             hhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEE
Confidence            45567899999999999999999999999999999999988877766 46889999999977   466899999999999


Q ss_pred             EEcCC----------CceeeEeccCCCCeEEEEECCCC-CEEEEEECCCeEEEEeCCCCeeeEeeccccccEEEEEECCC
Q psy12697        389 CKLHS----------DKPVKSFEGHTNEVNAIKWDPQG-LLLASCSDDMTLKIWSLDKDNCVHDLQAHNKEIYTIKWSPT  457 (602)
Q Consensus       389 ~d~~~----------~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~  457 (602)
                      +|+..          ..+...+..|...|..++..|++ ..+.++++||+|+-+|++....-..-.  ...+..+.+.+ 
T Consensus       122 fdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~--~~~~~l~ny~~-  198 (758)
T KOG1310|consen  122 FDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDE--DCPSILVNYNP-  198 (758)
T ss_pred             EecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccc--cccHHHHHhch-
Confidence            99984          23456667899999999999988 889999999999999998632110000  00000000111 


Q ss_pred             CCCCCCCCcceeeeeeeccCCccCCeEEEEEcc-CCCEEEEEeCCCeEEEEeCCC--------Cc----------eeeee
Q psy12697        458 GPETSNPNMSLIFILKSTLGQHKGPIFALKWNK-RGNYILSAGVDKTTIIWDAAS--------GQ----------CEQQF  518 (602)
Q Consensus       458 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~-~~~~l~s~~~dg~i~iwd~~~--------~~----------~~~~~  518 (602)
                                           .--...++.++| +..+|++|+.|-..++||.+.        +.          +++.+
T Consensus       199 ---------------------~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf  257 (758)
T KOG1310|consen  199 ---------------------QLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYF  257 (758)
T ss_pred             ---------------------hhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhhee
Confidence                                 112345666666 446899999999999999421        11          12222


Q ss_pred             c-ccC-----------CCeeEeeecCCc-eEEEeeCCCcEEEeecCCCCcee
Q psy12697        519 S-FHS-----------APALDVDWQSNT-SFASCSTDQHIHVCKLHSDKPVK  557 (602)
Q Consensus       519 ~-~~~-----------~~v~~~~~s~~~-~l~~~~~d~~i~iw~~~~~~~~~  557 (602)
                      . +|.           ..++-+.|+|+| -|++.-....|+++|+..++...
T Consensus       258 ~p~hlkn~~gn~~~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~~  309 (758)
T KOG1310|consen  258 SPGHLKNSQGNLDRYITCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKSPT  309 (758)
T ss_pred             cCccccCcccccccceeeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCCce
Confidence            1 121           125667899999 55555555679999998776443

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=99.58  E-value=1.9e-10  Score=121.51  Aligned_cols=379  Identities=14%  Similarity=0.227  Sum_probs=227.3

Q ss_pred             cCCceEEEEECCCCCeEEEeeCCceEEEEecCCceeEEEeecc------CceEEEEeCCCCCCCCCCCCccccccc---c
Q psy12697        139 HTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKGT------GGIFEVCWNSRGTPPNPPESMEVDASI---E  209 (602)
Q Consensus       139 h~~~V~~~~~s~d~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~---~  209 (602)
                      -..+|.|++||||+.+||....++++.+-+ .+.+.+......      .....+-|....+.+-...........   .
T Consensus       119 vd~GI~a~~WSPD~Ella~vT~~~~l~~mt-~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~  197 (928)
T PF04762_consen  119 VDSGILAASWSPDEELLALVTGEGNLLLMT-RDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPT  197 (928)
T ss_pred             EcCcEEEEEECCCcCEEEEEeCCCEEEEEe-ccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCC
Confidence            357899999999999999999999998875 555555544332      223445555444443333222211100   1


Q ss_pred             ccCCcceEeeCCCcceEEEEEcCCCCEEEEeeC---C---CcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCce
Q psy12697        210 IPQSKATKLIGHESEVFICAWNPVKDFLASGSG---D---STARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDV  283 (602)
Q Consensus       210 ~~~~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~---d---g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  283 (602)
                      ++......+. +...-..++|-.||.++|+.+-   .   ..+|+|+-+ +......+                +..+--
T Consensus       198 ~~~~d~~~~s-~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE----------------~v~gLe  259 (928)
T PF04762_consen  198 VPKVDEGKLS-WDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSE----------------PVDGLE  259 (928)
T ss_pred             CCccccCccc-cCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccc----------------cCCCcc
Confidence            1111122334 6667788999999999998764   2   578999865 22111100                112345


Q ss_pred             eEEeeCCCCCeEEEEeC---CCeEEEEcCCCcceee----cccccCCeEEEEEccCCCEEEEEecCCcEEEEeCCCCcee
Q psy12697        284 TSLDWNNNGSFLATGSY---DGYARIWTSDGSLKST----LGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCE  356 (602)
Q Consensus       284 ~~~~~~~~~~~l~~~~~---dg~i~i~~~~~~~~~~----~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~  356 (602)
                      .+++|.|.|++||+...   ...|.+|..+|-....    +......|..+.|++++..|+....|. |.+|-..+....
T Consensus       260 ~~l~WrPsG~lIA~~q~~~~~~~VvFfErNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWY  338 (928)
T PF04762_consen  260 GALSWRPSGNLIASSQRLPDRHDVVFFERNGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWY  338 (928)
T ss_pred             CCccCCCCCCEEEEEEEcCCCcEEEEEecCCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEE
Confidence            68899999999998765   4578888877643333    234567899999999999999877554 999998877643


Q ss_pred             E--Eeeec-cCCeeeeeccCC--CeEEEeeCCCeEEEEEc----CCC--------ceeeEec------------------
Q psy12697        357 Q--QFSFH-SAPALDVDWQSN--TSFASCSTDQHIHVCKL----HSD--------KPVKSFE------------------  401 (602)
Q Consensus       357 ~--~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~i~i~d~----~~~--------~~~~~~~------------------  401 (602)
                      .  .+... ...+..+.|++.  ..+.+.+.+|.+..+++    ..+        ..+..+.                  
T Consensus       339 LKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPM  418 (928)
T PF04762_consen  339 LKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPM  418 (928)
T ss_pred             EEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchH
Confidence            3  23322 223445889885  44666666666655443    111        0111111                  


Q ss_pred             -----cCCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeeeEeeccccccEEEEEECCCCCCCCCCCcceeeeeeecc
Q psy12697        402 -----GHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTL  476 (602)
Q Consensus       402 -----~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  476 (602)
                           .-...|.+++|++++..+++-..||.|.+|..............  ....+...              .......
T Consensus       419 s~~~l~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~~~~~~~~~~--~~~~~~~~--------------~~~~~~~  482 (928)
T PF04762_consen  419 SSYELELPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDLKNMWSVKPPK--LLSSISLD--------------SMDISDS  482 (928)
T ss_pred             hceEEcCCCCcEEEEEeCCCCeEEEEECCCCEEEEEecCCCcccccCcc--hhhhcccc--------------ccccccc
Confidence                 13467999999999988999999999999986543221100000  00000000              0000001


Q ss_pred             CCccCCeEEEEEccCCCEEEEEeCC---CeEEEEeCCCCc---eeeeecccCCCeeEeeecCCc-eEEEeeCCCcEEEee
Q psy12697        477 GQHKGPIFALKWNKRGNYILSAGVD---KTTIIWDAASGQ---CEQQFSFHSAPALDVDWQSNT-SFASCSTDQHIHVCK  549 (602)
Q Consensus       477 ~~~~~~v~~i~~s~~~~~l~s~~~d---g~i~iwd~~~~~---~~~~~~~~~~~v~~~~~s~~~-~l~~~~~d~~i~iw~  549 (602)
                      ......+..++|..+..+++....+   ..+.++++...+   .+.....-.+.+..+...++. .++.-..+|.+...+
T Consensus       483 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~G~v~~~~  562 (928)
T PF04762_consen  483 ELPLGSLRQLAWLNDDTLLVLSDSDSNQSKIVLVDIDDSENSASVESSTEVDGVVLIISSSPDSGSLYIQTNDGKVFQLS  562 (928)
T ss_pred             ccccccEEEEEEeCCCEEEEEEecCcccceEEEEEeccCCCceeEEEEeccCceEEEEeeCCCCcEEEEEECCCEEEEee
Confidence            1134556778888777776666554   678888874332   223333334556666666665 477777888888666


Q ss_pred             cCCC
Q psy12697        550 LHSD  553 (602)
Q Consensus       550 ~~~~  553 (602)
                      ....
T Consensus       563 ~~~~  566 (928)
T PF04762_consen  563 SDGE  566 (928)
T ss_pred             cCCC
Confidence            5443

>KOG3881|consensus

Probab=99.58  E-value=4.9e-13  Score=118.41  Aligned_cols=220  Identities=14%  Similarity=0.180  Sum_probs=162.8

Q ss_pred             CCCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEeeCCCCC-eEEEE
Q psy12697        220 GHESEVFICAWNPVKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGS-FLATG  298 (602)
Q Consensus       220 ~h~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~  298 (602)
                      ....+|..++..  +..|++|-.+|.+.+|....+.........             ......+..+.-++... .+++|
T Consensus       103 l~~~~I~gl~~~--dg~Litc~~sG~l~~~~~k~~d~hss~l~~-------------la~g~g~~~~r~~~~~p~Iva~G  167 (412)
T KOG3881|consen  103 LGTKSIKGLKLA--DGTLITCVSSGNLQVRHDKSGDLHSSKLIK-------------LATGPGLYDVRQTDTDPYIVATG  167 (412)
T ss_pred             cccccccchhhc--CCEEEEEecCCcEEEEeccCCcccccccee-------------eecCCceeeeccCCCCCceEecC
Confidence            345556555544  457888899999999999865532111110             11134566666666444 45568


Q ss_pred             eCC--CeEEEEcCCCcceeeccc-----------ccCCeEEEEEccC--CCEEEEEecCCcEEEEeCCCC-ceeEEeeec
Q psy12697        299 SYD--GYARIWTSDGSLKSTLGQ-----------HKGPIFALKWNKR--GNYILSAGVDKTTIIWDAASG-QCEQQFSFH  362 (602)
Q Consensus       299 ~~d--g~i~i~~~~~~~~~~~~~-----------~~~~i~~~~~~~~--~~~l~~~~~dg~i~~wd~~~~-~~~~~~~~~  362 (602)
                      +..  ..+.+||+.+. .+.+.+           -.-.++++.|.+.  ...|++++.-+.+++||.+.+ +++..+...
T Consensus       168 Gke~~n~lkiwdle~~-~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~  246 (412)
T KOG3881|consen  168 GKENINELKIWDLEQS-KQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFL  246 (412)
T ss_pred             chhcccceeeeecccc-eeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccc
Confidence            888  88999998865 333332           1234678889887  788999999999999999976 467788888


Q ss_pred             cCCeeeeeccCCC-eEEEeeCCCeEEEEEcCCCceeeE-eccCCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeeeE
Q psy12697        363 SAPALDVDWQSNT-SFASCSTDQHIHVCKLHSDKPVKS-FEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVH  440 (602)
Q Consensus       363 ~~~~~~~~~~~~~-~~~~~~~~~~i~i~d~~~~~~~~~-~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~  440 (602)
                      ..++.++...|++ .+++|...+.+..||++.++.... +.+..+.|+++..+|.+++|++++-|..|||+|+.+.+.+.
T Consensus       247 E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~  326 (412)
T KOG3881|consen  247 ENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLH  326 (412)
T ss_pred             cCcceeeeecCCCcEEEEecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccchhhh
Confidence            8999999888874 577888899999999999987766 88999999999999999999999999999999999866654


Q ss_pred             eeccccccEEEEEECC
Q psy12697        441 DLQAHNKEIYTIKWSP  456 (602)
Q Consensus       441 ~~~~~~~~i~~~~~~~  456 (602)
                      .... ...++.+.+.+
T Consensus       327 kvYv-Ks~lt~il~~~  341 (412)
T KOG3881|consen  327 KVYV-KSRLTFILLRD  341 (412)
T ss_pred             hhhh-hccccEEEecC
Confidence            4322 33345555543

>KOG2314|consensus

Probab=99.57  E-value=2.6e-12  Score=118.95  Aligned_cols=316  Identities=16%  Similarity=0.319  Sum_probs=206.7

Q ss_pred             ceEEEEECCCCCeEEEeeCCceEEEEecCCceeEEEeeccCceEEEEeCCCCCCCCCCCCccccccccccCCcceEeeCC
Q psy12697        142 PVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKGTGGIFEVCWNSRGTPPNPPESMEVDASIEIPQSKATKLIGH  221 (602)
Q Consensus       142 ~V~~~~~s~d~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h  221 (602)
                      .-+-+.|||-|.||+|--..| |.+|-=.+-..++.|.                                         |
T Consensus       212 Tetyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~-----------------------------------------H  249 (698)
T KOG2314|consen  212 TETYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRFY-----------------------------------------H  249 (698)
T ss_pred             eeeeEEecCCceEEEEEeccc-eeeecCccHHHHHhcc-----------------------------------------C
Confidence            346789999999999987666 7788655544443332                                         3


Q ss_pred             CcceEEEEEcCCCCEEEEeeC-----------CCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEeeCC
Q psy12697        222 ESEVFICAWNPVKDFLASGSG-----------DSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNN  290 (602)
Q Consensus       222 ~~~v~~~~~~~~~~~l~s~~~-----------dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  290 (602)
                       ..|.-+.|||..+||++-+.           ...++|||+.++..........             .....-.-+.||.
T Consensus       250 -p~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~-------------~~~~~WP~frWS~  315 (698)
T KOG2314|consen  250 -PGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIK-------------SPYLKWPIFRWSH  315 (698)
T ss_pred             -CCceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccC-------------CCccccceEEecc
Confidence             24778899999999998653           2579999999998765443210             0011234568999


Q ss_pred             CCCeEEEEeCCCeEEEEcCCCc-ceeecccccCCeEEEEEccCCCEEEEEe-----cCCcEEEEeCCCCceeEEeeeccC
Q psy12697        291 NGSFLATGSYDGYARIWTSDGS-LKSTLGQHKGPIFALKWNKRGNYILSAG-----VDKTTIIWDAASGQCEQQFSFHSA  364 (602)
Q Consensus       291 ~~~~l~~~~~dg~i~i~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~l~~~~-----~dg~i~~wd~~~~~~~~~~~~~~~  364 (602)
                      |++++|.-.. ..|.||+...- +...-.-....|....|+|.++.|+-=+     .-..+.+..+.+++.++.-..+.-
T Consensus       316 DdKy~Arm~~-~sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnV  394 (698)
T KOG2314|consen  316 DDKYFARMTG-NSISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNV  394 (698)
T ss_pred             CCceeEEecc-ceEEEEecCceeeecccccCCccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeeccceee
Confidence            9999998776 45888875531 1111112345688899999988887432     224677888888888887777766


Q ss_pred             CeeeeeccCCCeEEEeeCC-----------CeEEEEEcCCCc-eeeEeccCCCCeEEEEECCCCCEEEEEECC---CeEE
Q psy12697        365 PALDVDWQSNTSFASCSTD-----------QHIHVCKLHSDK-PVKSFEGHTNEVNAIKWDPQGLLLASCSDD---MTLK  429 (602)
Q Consensus       365 ~~~~~~~~~~~~~~~~~~~-----------~~i~i~d~~~~~-~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---g~i~  429 (602)
                      .-..+.|..++.+++.--|           ..+.|+.++... ++..+ .-...|...+|.|.|..+++-+.+   .++.
T Consensus       395 sDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~v-elke~vi~FaWEP~gdkF~vi~g~~~k~tvs  473 (698)
T KOG2314|consen  395 SDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVV-ELKESVIAFAWEPHGDKFAVISGNTVKNTVS  473 (698)
T ss_pred             eccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceee-ecchheeeeeeccCCCeEEEEEcccccccee
Confidence            6667788877766554322           235566665544 23332 245678899999999988876643   4577


Q ss_pred             EEeCCCC----eeeEeeccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEE---eCCC
Q psy12697        430 IWSLDKD----NCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSA---GVDK  502 (602)
Q Consensus       430 iwd~~~~----~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~---~~dg  502 (602)
                      +|.+.+.    +.+..+                                    .....+.+.|+|.|++++.+   |..|
T Consensus       474 fY~~e~~~~~~~lVk~~------------------------------------dk~~~N~vfwsPkG~fvvva~l~s~~g  517 (698)
T KOG2314|consen  474 FYAVETNIKKPSLVKEL------------------------------------DKKFANTVFWSPKGRFVVVAALVSRRG  517 (698)
T ss_pred             EEEeecCCCchhhhhhh------------------------------------cccccceEEEcCCCcEEEEEEeccccc
Confidence            7766531    111111                                    12345678889999998876   4578


Q ss_pred             eEEEEeCCCCceeeeecccCCCeeEeeecCCc-eEEEeeC------CCcEEEeecC
Q psy12697        503 TTIIWDAASGQCEQQFSFHSAPALDVDWQSNT-SFASCST------DQHIHVCKLH  551 (602)
Q Consensus       503 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~-~l~~~~~------d~~i~iw~~~  551 (602)
                      .+..+|+....+...-.......+.+.|.|.| +++++++      |..-+||++.
T Consensus       518 ~l~F~D~~~a~~k~~~~~eh~~at~veWDPtGRYvvT~ss~wrhk~d~GYri~tfq  573 (698)
T KOG2314|consen  518 DLEFYDTDYADLKDTASPEHFAATEVEWDPTGRYVVTSSSSWRHKVDNGYRIFTFQ  573 (698)
T ss_pred             ceEEEecchhhhhhccCccccccccceECCCCCEEEEeeehhhhccccceEEEEee
Confidence            89999988544433322223456789999999 8887765      3445566653

>KOG1354|consensus

Probab=99.57  E-value=1.9e-13  Score=118.84  Aligned_cols=295  Identities=16%  Similarity=0.294  Sum_probs=193.6

Q ss_pred             CCceeEEeeCCCCCeEEEEeCCCeEEEEcCCCc------ceeecccc------------cCCeEEEEEccCCC--EEEEE
Q psy12697        280 NKDVTSLDWNNNGSFLATGSYDGYARIWTSDGS------LKSTLGQH------------KGPIFALKWNKRGN--YILSA  339 (602)
Q Consensus       280 ~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~------~~~~~~~~------------~~~i~~~~~~~~~~--~l~~~  339 (602)
                      ..-|.++.|...|.+|++|..+|.|.++..+..      ....++.|            ...|..+.|.++++  .++..
T Consensus        25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLls  104 (433)
T KOG1354|consen   25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLS  104 (433)
T ss_pred             hcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEe
Confidence            356899999999999999999999999975421      22233333            34688899988664  57778


Q ss_pred             ecCCcEEEEeCCCCceeE--------------------Ee----------------eeccCCeeeeeccCCCeEEEeeCC
Q psy12697        340 GVDKTTIIWDAASGQCEQ--------------------QF----------------SFHSAPALDVDWQSNTSFASCSTD  383 (602)
Q Consensus       340 ~~dg~i~~wd~~~~~~~~--------------------~~----------------~~~~~~~~~~~~~~~~~~~~~~~~  383 (602)
                      +.|.+|++|.+.......                    .+                ..|...+.++.+..+...+....|
T Consensus       105 tNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSADd  184 (433)
T KOG1354|consen  105 TNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSADD  184 (433)
T ss_pred             cCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeeccc
Confidence            889999999876432111                    00                123445667777778777888888


Q ss_pred             CeEEEEEcCCCce---eeEeccCC-----CCeEEEEECC-CCCEEEEEECCCeEEEEeCCCCeee----EeeccccccEE
Q psy12697        384 QHIHVCKLHSDKP---VKSFEGHT-----NEVNAIKWDP-QGLLLASCSDDMTLKIWSLDKDNCV----HDLQAHNKEIY  450 (602)
Q Consensus       384 ~~i~i~d~~~~~~---~~~~~~~~-----~~i~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~----~~~~~~~~~i~  450 (602)
                      =.|.+|++.-...   +..++.+.     .-|++..|+| ....++-.+..|+|++-|++....-    ..+.....+..
T Consensus       185 LRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~~  264 (433)
T KOG1354|consen  185 LRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPSS  264 (433)
T ss_pred             eeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCCcc
Confidence            9999999864321   22233332     3488999999 4567888888999999999853211    11111111100


Q ss_pred             EEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCCCeEEEEeC-CCCceeeeecccCC------
Q psy12697        451 TIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDA-ASGQCEQQFSFHSA------  523 (602)
Q Consensus       451 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~-~~~~~~~~~~~~~~------  523 (602)
                                            ..-+.+--..|..+.|+++|+|+++-+. -+|++||+ ...+++.++..|..      
T Consensus       265 ----------------------rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kLc  321 (433)
T KOG1354|consen  265 ----------------------RSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKLC  321 (433)
T ss_pred             ----------------------hhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHHHH
Confidence                                  0011223467889999999999998654 56999999 45666766665532      


Q ss_pred             ------Ce---eEeeecCCc-eEEEeeCCCcEEEeecCCCCc-eeeeeccccc----------------c------eEEE
Q psy12697        524 ------PA---LDVDWQSNT-SFASCSTDQHIHVCKLHSDKP-VKSFEGHTTG----------------Q------LVHS  570 (602)
Q Consensus       524 ------~v---~~~~~s~~~-~l~~~~~d~~i~iw~~~~~~~-~~~~~~~~~~----------------~------~~~~  570 (602)
                            .|   ..++|+.++ .+++|+..+.++++++..+.. ..+++.....                .      ....
T Consensus       322 ~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~gsk~d~tl~asr~~~~~~~~~k~~~V~~~g~r~~~~~~vd~  401 (433)
T KOG1354|consen  322 SLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARGSKEDFTLEASRKNMKPRKVLKLRLVSSSGKRKRDEISVDA  401 (433)
T ss_pred             HHhhccchhheeEEEEcCCcceEecccccceEEEecCCCCcceeecccccccCCcccccccceeeecCCCccccccccch
Confidence                  22   457899988 999999999999999765531 1222111100                0      0111


Q ss_pred             EecCCcEEEEEECCCCCeEEEeccCCe
Q psy12697        571 YKGTGGIFEVCWNSRGDKVGASASDGS  597 (602)
Q Consensus       571 ~~~~~~i~~l~~spdg~~l~~~~~dg~  597 (602)
                      +.....+...+|+|..+.+|++..+..
T Consensus       402 ldf~kkilh~aWhp~en~ia~aatnnl  428 (433)
T KOG1354|consen  402 LDFRKKILHTAWHPKENSIAVAATNNL  428 (433)
T ss_pred             hhhhhHHHhhccCCccceeeeeecCce
Confidence            112234667899999999998877653

>KOG0974|consensus

Probab=99.57  E-value=5.4e-13  Score=132.73  Aligned_cols=137  Identities=20%  Similarity=0.408  Sum_probs=113.6

Q ss_pred             ccceeeeecccceeeeeeeccCCceEEEEECCCCCeEEEeeCCceEEEEecCCceeEEEeeccCceEEEEeCCCCCCCCC
Q psy12697        119 RLTLPLWDVERGECLNTLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKGTGGIFEVCWNSRGTPPNP  198 (602)
Q Consensus       119 ~~~i~vwd~~~~~~~~~l~~h~~~V~~~~~s~d~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (602)
                      -+.|.+|++..-..-..+.||.+.|..+.++-||+++++.|+|.++++|++++++...                      
T Consensus       154 ~~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~----------------------  211 (967)
T KOG0974|consen  154 FGEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLG----------------------  211 (967)
T ss_pred             cccEEEEeccccCCcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccC----------------------
Confidence            4678899998444445799999999999999999999999999999999999987652                      


Q ss_pred             CCCccccccccccCCcceEeeCCCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccC
Q psy12697        199 PESMEVDASIEIPQSKATKLIGHESEVFICAWNPVKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVP  278 (602)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (602)
                                       ....+|+..|+.+.|.|+  .+++++.|.+.++|+.+.....      ....          .
T Consensus       212 -----------------~~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~~~~~l~------~y~~----------h  256 (967)
T KOG0974|consen  212 -----------------CTGFGHSARVWACCFLPN--RIITVGEDCTCRVWGVNGTQLE------VYDE----------H  256 (967)
T ss_pred             -----------------cccccccceeEEEEeccc--eeEEeccceEEEEEecccceeh------hhhh----------h
Confidence                             245689999999999998  9999999999999976544322      1111          1


Q ss_pred             CCCceeEEeeCCCCCeEEEEeCCCeEEEEcCCCc
Q psy12697        279 SNKDVTSLDWNNNGSFLATGSYDGYARIWTSDGS  312 (602)
Q Consensus       279 ~~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~  312 (602)
                      ..+.|..++..++...+++++.||.+++|++.+.
T Consensus       257 ~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r  290 (967)
T KOG0974|consen  257 SGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNGR  290 (967)
T ss_pred             hhcceeEEEEcCCceEEEeeccCcchhhhhhhcc
Confidence            2467999999999999999999999999997654

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.57  E-value=4.5e-13  Score=115.30  Aligned_cols=132  Identities=20%  Similarity=0.459  Sum_probs=95.1

Q ss_pred             eEEEEEcCC-CceeeEecc-CCCCeEEEEECCCCCEEEEE--ECCCeEEEEeCCCCeeeEeeccccccEEEEEECCCCCC
Q psy12697        385 HIHVCKLHS-DKPVKSFEG-HTNEVNAIKWDPQGLLLASC--SDDMTLKIWSLDKDNCVHDLQAHNKEIYTIKWSPTGPE  460 (602)
Q Consensus       385 ~i~i~d~~~-~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~--~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~  460 (602)
                      ...+|.++. ..++..+.- ..++|.+++|+|+|+.||+.  ..++.|.+||++ ++.+..+.                 
T Consensus        38 ~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~~~-----------------   99 (194)
T PF08662_consen   38 EFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFSFG-----------------   99 (194)
T ss_pred             eEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEEcCc-ccEeEeec-----------------
Confidence            345555532 234444443 34579999999999987665  356799999996 44444442                 


Q ss_pred             CCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCC---CeEEEEeCCCCceeeeecccCCCeeEeeecCCc-eE
Q psy12697        461 TSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVD---KTTIIWDAASGQCEQQFSFHSAPALDVDWQSNT-SF  536 (602)
Q Consensus       461 ~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~-~l  536 (602)
                                         ...++.+.|||+|++|++++.+   |.|.+||+++.+.+.... | ..++.++|+||| ++
T Consensus       100 -------------------~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~-~-~~~t~~~WsPdGr~~  158 (194)
T PF08662_consen  100 -------------------TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE-H-SDATDVEWSPDGRYL  158 (194)
T ss_pred             -------------------CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc-c-CcEEEEEEcCCCCEE
Confidence                               3455678888899999998754   679999999888887776 3 347899999999 88


Q ss_pred             EEeeC------CCcEEEeecCCCCce
Q psy12697        537 ASCST------DQHIHVCKLHSDKPV  556 (602)
Q Consensus       537 ~~~~~------d~~i~iw~~~~~~~~  556 (602)
                      +++..      |+.++||++. |+.+
T Consensus       159 ~ta~t~~r~~~dng~~Iw~~~-G~~l  183 (194)
T PF08662_consen  159 ATATTSPRLRVDNGFKIWSFQ-GRLL  183 (194)
T ss_pred             EEEEeccceeccccEEEEEec-CeEe
Confidence            87764      7889999973 4443

>KOG2314|consensus

Probab=99.57  E-value=1.1e-12  Score=121.39  Aligned_cols=301  Identities=16%  Similarity=0.256  Sum_probs=204.1

Q ss_pred             ceeEEeeCCCCCeEEEEeCCCeEEEEcCCC-cceeecccccCCeEEEEEccCCCEEEEEec-----------CCcEEEEe
Q psy12697        282 DVTSLDWNNNGSFLATGSYDGYARIWTSDG-SLKSTLGQHKGPIFALKWNKRGNYILSAGV-----------DKTTIIWD  349 (602)
Q Consensus       282 ~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-----------dg~i~~wd  349 (602)
                      .-+-+.|||.|.+|++-...| |.+|--.. ...+.+ .|. .|.-+.|||+.+||++-+.           ...++|||
T Consensus       212 Tetyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF-~Hp-~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWD  288 (698)
T KOG2314|consen  212 TETYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRF-YHP-GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWD  288 (698)
T ss_pred             eeeeEEecCCceEEEEEeccc-eeeecCccHHHHHhc-cCC-CceeeecCCccceEEEecCCccccCcccCCCceEEEEE
Confidence            347789999999999987776 77886442 122222 344 4889999999999998652           25799999


Q ss_pred             CCCCceeEEeeeccC--Ce-eeeeccCCCeEEEeeCCCeEEEEEcCCCceeeEeccCCCCeEEEEECCCCCEEEEEECC-
Q psy12697        350 AASGQCEQQFSFHSA--PA-LDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDD-  425 (602)
Q Consensus       350 ~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-  425 (602)
                      +.+|...+.+.....  .. .-+.|+.+..+++.-....|.||+..+..++..-.-.-..|....|+|.+++||--... 
T Consensus       289 I~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwtpe~  368 (698)
T KOG2314|consen  289 IATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGNSISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTPET  368 (698)
T ss_pred             ccccchhcceeccCCCccccceEEeccCCceeEEeccceEEEEecCceeeecccccCCccccCcccCCCcceEEEEcccc
Confidence            999999988876332  22 24578999999888888999999988765554444445678899999999988865432 


Q ss_pred             ----CeEEEEeCCCCeeeEeeccccccEEEEEECCCCCCCCCC-----------Ccceeeeeee-------ccCCccCCe
Q psy12697        426 ----MTLKIWSLDKDNCVHDLQAHNKEIYTIKWSPTGPETSNP-----------NMSLIFILKS-------TLGQHKGPI  483 (602)
Q Consensus       426 ----g~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-----------~~~~~~~~~~-------~~~~~~~~v  483 (602)
                          .++.+-.+.+++.+++...++-.-..+-|..+|.++...           .......+..       ....-...|
T Consensus       369 ~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velke~v  448 (698)
T KOG2314|consen  369 NNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKESV  448 (698)
T ss_pred             cCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeeecchhe
Confidence                457788888887777766555444555666655543211           1111111111       111345778


Q ss_pred             EEEEEccCCCEEEEEeC---CCeEEEEeCCC-C---ceeeeecccCCCeeEeeecCCc-eEEEe---eCCCcEEEeecCC
Q psy12697        484 FALKWNKRGNYILSAGV---DKTTIIWDAAS-G---QCEQQFSFHSAPALDVDWQSNT-SFASC---STDQHIHVCKLHS  552 (602)
Q Consensus       484 ~~i~~s~~~~~l~s~~~---dg~i~iwd~~~-~---~~~~~~~~~~~~v~~~~~s~~~-~l~~~---~~d~~i~iw~~~~  552 (602)
                      ...+|-|.|+.+++-+.   ..++.+|.+++ .   +++..+.  ....+.+.|+|.| .++.+   +..|.+.++|+.-
T Consensus       449 i~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~d--k~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~  526 (698)
T KOG2314|consen  449 IAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELD--KKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDY  526 (698)
T ss_pred             eeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhc--ccccceEEEcCCCcEEEEEEecccccceEEEecch
Confidence            89999999998876554   35788888773 2   2333443  2457789999999 55544   4578899999763


Q ss_pred             C--CceeeeecccccceEEEEecCCcEEEEEECCCCCeEEEeccCCeEEe
Q psy12697        553 D--KPVKSFEGHTTGQLVHSYKGTGGIFEVCWNSRGDKVGASASDGSVFK  600 (602)
Q Consensus       553 ~--~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~v~i  600 (602)
                      .  +.+...             .+...+.+.|+|.|+++++++.-+..++
T Consensus       527 a~~k~~~~~-------------eh~~at~veWDPtGRYvvT~ss~wrhk~  563 (698)
T KOG2314|consen  527 ADLKDTASP-------------EHFAATEVEWDPTGRYVVTSSSSWRHKV  563 (698)
T ss_pred             hhhhhccCc-------------cccccccceECCCCCEEEEeeehhhhcc
Confidence            1  111111             1244678899999999999988665443

>KOG0974|consensus

Probab=99.54  E-value=9.7e-12  Score=124.03  Aligned_cols=199  Identities=19%  Similarity=0.226  Sum_probs=157.4

Q ss_pred             cceEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEeeCCCCCeEEEEeCCC
Q psy12697        223 SEVFICAWNPVKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFLATGSYDG  302 (602)
Q Consensus       223 ~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg  302 (602)
                      ..|....+.-+...++.++.+..+.+||...+.............            -....-+.++++.-++++|+.-+
T Consensus        88 ~wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~------------l~~~~~~g~s~~~~~i~~gsv~~  155 (967)
T KOG0974|consen   88 DWIFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCT------------LYSSLIIGDSAEELYIASGSVFG  155 (967)
T ss_pred             ccccccchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEE------------EEeEEEEeccCcEEEEEeccccc
Confidence            344556666678889999999999999988765432221111000            01122334566777899999999


Q ss_pred             eEEEEcCCCccee-ecccccCCeEEEEEccCCCEEEEEecCCcEEEEeCCCCceeE-EeeeccCCeeeeeccCCCeEEEe
Q psy12697        303 YARIWTSDGSLKS-TLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQ-QFSFHSAPALDVDWQSNTSFASC  380 (602)
Q Consensus       303 ~i~i~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  380 (602)
                      .|.+|+....... .+.+|.+.|.++.|+.||+++++.+.|.++++|++.+.+... ..-+|+..+..+.+.|+ .++++
T Consensus       156 ~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n-~i~t~  234 (967)
T KOG0974|consen  156 EIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN-RIITV  234 (967)
T ss_pred             cEEEEeccccCCcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc-eeEEe
Confidence            9999997643333 588999999999999999999999999999999999988776 55679999999999999 99999


Q ss_pred             eCCCeEEEEEcCCCceeeEeccCCC-CeEEEEECCCCCEEEEEECCCeEEEEeCCC
Q psy12697        381 STDQHIHVCKLHSDKPVKSFEGHTN-EVNAIKWDPQGLLLASCSDDMTLKIWSLDK  435 (602)
Q Consensus       381 ~~~~~i~i~d~~~~~~~~~~~~~~~-~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~  435 (602)
                      +.|-+.++|+... +.+..+.+|.. .|..++..++...+++++.|+.+++||+..
T Consensus       235 gedctcrvW~~~~-~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~  289 (967)
T KOG0974|consen  235 GEDCTCRVWGVNG-TQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNG  289 (967)
T ss_pred             ccceEEEEEeccc-ceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhc
Confidence            9999999996654 44457777865 599999999999999999999999999864

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.54  E-value=1e-12  Score=113.08  Aligned_cols=154  Identities=22%  Similarity=0.430  Sum_probs=109.5

Q ss_pred             EEEEEccCCCEEEEEec----------CCcEEEEeCCC-CceeEEeee-ccCCeeeeeccCCCe-EEE--eeCCCeEEEE
Q psy12697        325 FALKWNKRGNYILSAGV----------DKTTIIWDAAS-GQCEQQFSF-HSAPALDVDWQSNTS-FAS--CSTDQHIHVC  389 (602)
Q Consensus       325 ~~~~~~~~~~~l~~~~~----------dg~i~~wd~~~-~~~~~~~~~-~~~~~~~~~~~~~~~-~~~--~~~~~~i~i~  389 (602)
                      ..+.|+|+|++|+.-..          -+...+|.++. +.....+.. ...+|.+++|+|++. |++  |..++.|.+|
T Consensus         9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly   88 (194)
T PF08662_consen    9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY   88 (194)
T ss_pred             EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence            46789999988875433          13345555522 233444444 345799999999854 443  4456799999


Q ss_pred             EcCCCceeeEeccCCCCeEEEEECCCCCEEEEEEC---CCeEEEEeCCCCeeeEeeccccccEEEEEECCCCCCCCCCCc
Q psy12697        390 KLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSD---DMTLKIWSLDKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNM  466 (602)
Q Consensus       390 d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  466 (602)
                      |++ ++++..+.  ...+..+.|+|+|++|++++.   .|.|.+||.++.+.+.....                      
T Consensus        89 d~~-~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~----------------------  143 (194)
T PF08662_consen   89 DVK-GKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFEH----------------------  143 (194)
T ss_pred             cCc-ccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeecccc----------------------
Confidence            997 66666664  467789999999999999875   36799999998777765532                      


Q ss_pred             ceeeeeeeccCCccCCeEEEEEccCCCEEEEEeC------CCeEEEEeCCCCceeeee
Q psy12697        467 SLIFILKSTLGQHKGPIFALKWNKRGNYILSAGV------DKTTIIWDAASGQCEQQF  518 (602)
Q Consensus       467 ~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~------dg~i~iwd~~~~~~~~~~  518 (602)
                                    ..++.++|||||++|+++..      |..++||+.. |+.+...
T Consensus       144 --------------~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~-G~~l~~~  186 (194)
T PF08662_consen  144 --------------SDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQ-GRLLYKK  186 (194)
T ss_pred             --------------CcEEEEEEcCCCCEEEEEEeccceeccccEEEEEec-CeEeEec
Confidence                          23567788889999998864      6789999985 6666543

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=99.51  E-value=2.8e-11  Score=111.21  Aligned_cols=297  Identities=14%  Similarity=0.248  Sum_probs=197.7

Q ss_pred             CCceeEEeeCCCCCeEEEEeCCCeEEEEcCCCc-ceeecccccCCeEEEEEccCCCEEEEEecC---------------C
Q psy12697        280 NKDVTSLDWNNNGSFLATGSYDGYARIWTSDGS-LKSTLGQHKGPIFALKWNKRGNYILSAGVD---------------K  343 (602)
Q Consensus       280 ~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---------------g  343 (602)
                      .-++..++|||.|.+|++....| |.+|.-... .+..+  ....|..+.|+|.+++|.+=+..               .
T Consensus        32 ~~p~~~~~~SP~G~~l~~~~~~~-V~~~~g~~~~~l~~~--~~~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n  108 (561)
T COG5354          32 NWPVAYVSESPLGTYLFSEHAAG-VECWGGPSKAKLVRF--RHPDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKN  108 (561)
T ss_pred             CcchhheeecCcchheehhhccc-eEEccccchhheeee--ecCCceecccCcccceeeeeccCCccChhhccCCccccC
Confidence            46788999999999999877665 788875522 22222  23468999999999999986543               3


Q ss_pred             cEEEEeCCCCceeEEeeeccCC--ee-eeeccCCCeEEEeeCCCeEEEEEcCCC-c--eeeEeccCCCCeEEEEECCCC-
Q psy12697        344 TTIIWDAASGQCEQQFSFHSAP--AL-DVDWQSNTSFASCSTDQHIHVCKLHSD-K--PVKSFEGHTNEVNAIKWDPQG-  416 (602)
Q Consensus       344 ~i~~wd~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~i~i~d~~~~-~--~~~~~~~~~~~i~~~~~~~~~-  416 (602)
                      .+.+||+.++..+..+.....+  .. -+.|+-+..+++--....++++++... .  +...++  ...|....|+|.+ 
T Consensus       109 ~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv~~sl~i~e~t~n~~~~p~~~lr--~~gi~dFsisP~~n  186 (561)
T COG5354         109 NVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVVGSSLYIHEITDNIEEHPFKNLR--PVGILDFSISPEGN  186 (561)
T ss_pred             ceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhhccCeEEEEecCCccccCchhhcc--ccceeeEEecCCCC
Confidence            5999999999999988877666  44 566777766665556778999997221 1  122222  3458888999953 


Q ss_pred             -CEEEE-----EECCCeEEEEeCCCCeeeEeeccccccEEEEEECCCCCCCCCCC-------c-----ceeeee---eec
Q psy12697        417 -LLLAS-----CSDDMTLKIWSLDKDNCVHDLQAHNKEIYTIKWSPTGPETSNPN-------M-----SLIFIL---KST  475 (602)
Q Consensus       417 -~~l~~-----~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-------~-----~~~~~~---~~~  475 (602)
                       ..||.     .+.++++++|.+..+..+.+..-....-..+.|.+.+..+....       .     .....+   ...
T Consensus       187 ~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~  266 (561)
T COG5354         187 HDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERS  266 (561)
T ss_pred             CceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeecccc
Confidence             44554     35678999999987766655443333444566766665432110       0     111111   111


Q ss_pred             cC---CccCCeEEEEEccCCCEEEEEe--CCCeEEEEeCCCCceeeeecccCCCeeEeeecCCc-eEEEeeCC---CcEE
Q psy12697        476 LG---QHKGPIFALKWNKRGNYILSAG--VDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNT-SFASCSTD---QHIH  546 (602)
Q Consensus       476 ~~---~~~~~v~~i~~s~~~~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~-~l~~~~~d---~~i~  546 (602)
                      ..   .-.++|...+|.|.++.+++.+  .+-.+.++|++.. ....  .....=..+.|+|.+ +++.++.|   |.|-
T Consensus       267 i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~~--~Pe~~rNT~~fsp~~r~il~agF~nl~gni~  343 (561)
T COG5354         267 IPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LRFY--FPEQKRNTIFFSPHERYILFAGFDNLQGNIE  343 (561)
T ss_pred             cceeccccccceeeeecccCCceeEEecccccceeecccccc-eEEe--cCCcccccccccCcccEEEEecCCccccceE
Confidence            11   4588999999999998877654  7889999999855 3333  345556778999999 77776655   6799


Q ss_pred             EeecCCCCcee-eeecccccceEEEEecCCcEEEEEECCCCCeEEEeccCCe
Q psy12697        547 VCKLHSDKPVK-SFEGHTTGQLVHSYKGTGGIFEVCWNSRGDKVGASASDGS  597 (602)
Q Consensus       547 iw~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~  597 (602)
                      +||......+. .+.+.             ..+-+.|+|||.++.+....-.
T Consensus       344 i~~~~~rf~~~~~~~~~-------------n~s~~~wspd~qF~~~~~ts~k  382 (561)
T COG5354         344 IFDPAGRFKVAGAFNGL-------------NTSYCDWSPDGQFYDTDTTSEK  382 (561)
T ss_pred             EeccCCceEEEEEeecC-------------CceEeeccCCceEEEecCCCcc
Confidence            99975543332 33332             2455679999999887765433

>KOG1409|consensus

Probab=99.51  E-value=7.2e-13  Score=115.32  Aligned_cols=246  Identities=15%  Similarity=0.248  Sum_probs=156.7

Q ss_pred             ceeeeeeeccCCceEEEEECCCCCeEEEeeCCceEEEEe-cCCceeEEEee--ccCceEEEEeCCCCCCCCCCCCccccc
Q psy12697        130 GECLNTLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWS-ARTGQLVHSYK--GTGGIFEVCWNSRGTPPNPPESMEVDA  206 (602)
Q Consensus       130 ~~~~~~l~~h~~~V~~~~~s~d~~~l~s~~~d~~v~iwd-~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (602)
                      ...++.++||.+.|+....-|...-+++.+.|.+++||- .+.++--.++.  .+.++..+.+......+..........
T Consensus        14 p~ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvt   93 (404)
T KOG1409|consen   14 PELLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVT   93 (404)
T ss_pred             hhhhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceEE
Confidence            356778899999999999999888999999999999994 33344332222  244555555555443332222211111


Q ss_pred             cccc-----cCCcceEeeCCCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCC
Q psy12697        207 SIEI-----PQSKATKLIGHESEVFICAWNPVKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNK  281 (602)
Q Consensus       207 ~~~~-----~~~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  281 (602)
                      ....     .-...+....|...|..+-|+-....+++.+.|..+.---.+.+.........                 .
T Consensus        94 efs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~-----------------~  156 (404)
T KOG1409|consen   94 EFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFE-----------------T  156 (404)
T ss_pred             EEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEee-----------------c
Confidence            1111     11223455679999999999999999999999987765555544433221111                 1


Q ss_pred             ceeEEeeCCCCCeEEEEeCCCeEEEEcC---CCcceeecccccCCeEEEEEccCCCEEEEEecCCcEEEEeCCCCcee-E
Q psy12697        282 DVTSLDWNNNGSFLATGSYDGYARIWTS---DGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCE-Q  357 (602)
Q Consensus       282 ~i~~~~~~~~~~~l~~~~~dg~i~i~~~---~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~-~  357 (602)
                      ..+++.+.-.  +...|...|.|.+..+   .-..+.++.+|.+.+.+++|.+....|.++..|..+.+||+.-++-. .
T Consensus       157 ~~t~~~~d~~--~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~  234 (404)
T KOG1409|consen  157 PASALQFDAL--YAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAY  234 (404)
T ss_pred             cCCCCceeeE--EEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceee
Confidence            1111111111  4555666666655543   34677788999999999999999999999999999999998755433 2


Q ss_pred             EeeeccCCeeeeeccCC-CeEEEeeCCCeEEEEEcCCC
Q psy12697        358 QFSFHSAPALDVDWQSN-TSFASCSTDQHIHVCKLHSD  394 (602)
Q Consensus       358 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~i~d~~~~  394 (602)
                      ...+|...+..+...+- ..+++++.||.|.+|+++..
T Consensus       235 el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~  272 (404)
T KOG1409|consen  235 ELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNVK  272 (404)
T ss_pred             eeccchhhhhhhhhhhhheeeeeccCCCeEEEEeccce
Confidence            34455555555554443 34666666777777766544

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=99.50  E-value=4.7e-11  Score=116.48  Aligned_cols=296  Identities=10%  Similarity=0.018  Sum_probs=188.3

Q ss_pred             CCCeEEEeeCCceEEEEecCCceeEEEeeccCceEEEEeCCCCCCCCCCCCccccccccccCCcceEeeCCCcceEEEEE
Q psy12697        151 DGKFLASGSFDKCVHIWSARTGQLVHSYKGTGGIFEVCWNSRGTPPNPPESMEVDASIEIPQSKATKLIGHESEVFICAW  230 (602)
Q Consensus       151 d~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~  230 (602)
                      .+..+++++.++.|.-+|..+|+.+..++....+                                     ..   ... 
T Consensus        64 ~~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~-------------------------------------~~---~p~-  102 (377)
T TIGR03300        64 AGGKVYAADADGTVVALDAETGKRLWRVDLDERL-------------------------------------SG---GVG-  102 (377)
T ss_pred             ECCEEEEECCCCeEEEEEccCCcEeeeecCCCCc-------------------------------------cc---ceE-
Confidence            3678888889999999999999987655432110                                     00   011 


Q ss_pred             cCCCCEEEEeeCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeE-EeeCCCCCeEEEEeCCCeEEEEcC
Q psy12697        231 NPVKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTS-LDWNNNGSFLATGSYDGYARIWTS  309 (602)
Q Consensus       231 ~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~~~~l~~~~~dg~i~i~~~  309 (602)
                       .++..++.++.++.+..+|..+++........                 ..+.+ ...  .+..+++++.+|.+..||.
T Consensus       103 -v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~-----------------~~~~~~p~v--~~~~v~v~~~~g~l~a~d~  162 (377)
T TIGR03300       103 -ADGGLVFVGTEKGEVIALDAEDGKELWRAKLS-----------------SEVLSPPLV--ANGLVVVRTNDGRLTALDA  162 (377)
T ss_pred             -EcCCEEEEEcCCCEEEEEECCCCcEeeeeccC-----------------ceeecCCEE--ECCEEEEECCCCeEEEEEc
Confidence             24667888888999999999888754322211                 11111 111  2456777888999999997


Q ss_pred             C-CcceeecccccCCe-----EEEEEccCCCEEEEEecCCcEEEEeCCCCceeEEeeeccC----C------eeeeeccC
Q psy12697        310 D-GSLKSTLGQHKGPI-----FALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSA----P------ALDVDWQS  373 (602)
Q Consensus       310 ~-~~~~~~~~~~~~~i-----~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~----~------~~~~~~~~  373 (602)
                      + |+.+.........+     ......  +..++.+..++.+..+|.++|+.+........    .      +.......
T Consensus       163 ~tG~~~W~~~~~~~~~~~~~~~sp~~~--~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~  240 (377)
T TIGR03300       163 ATGERLWTYSRVTPALTLRGSASPVIA--DGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVD  240 (377)
T ss_pred             CCCceeeEEccCCCceeecCCCCCEEE--CCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEE
Confidence            5 55544433222111     011111  24677888889999999999987765432111    0      00001112


Q ss_pred             CCeEEEeeCCCeEEEEEcCCCceeeEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeeeEeeccccccEEEEE
Q psy12697        374 NTSFASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHDLQAHNKEIYTIK  453 (602)
Q Consensus       374 ~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~  453 (602)
                      ++.+++++.+|.++.+|..+++.+......  ......  ..+..++.++.||.+..+|..+++.+..........    
T Consensus       241 ~~~vy~~~~~g~l~a~d~~tG~~~W~~~~~--~~~~p~--~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~----  312 (377)
T TIGR03300       241 GGQVYAVSYQGRVAALDLRSGRVLWKRDAS--SYQGPA--VDDNRLYVTDADGVVVALDRRSGSELWKNDELKYRQ----  312 (377)
T ss_pred             CCEEEEEEcCCEEEEEECCCCcEEEeeccC--CccCce--EeCCEEEEECCCCeEEEEECCCCcEEEccccccCCc----
Confidence            567888889999999999999877655421  111222  246678888899999999999988765542211100    


Q ss_pred             ECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeeecccCCCeeEeeecCC
Q psy12697        454 WSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSN  533 (602)
Q Consensus       454 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~  533 (602)
                                               ...+    ..  .+..|++++.+|.|+++|..+|+.+..+..+...+..--...+
T Consensus       313 -------------------------~ssp----~i--~g~~l~~~~~~G~l~~~d~~tG~~~~~~~~~~~~~~~sp~~~~  361 (377)
T TIGR03300       313 -------------------------LTAP----AV--VGGYLVVGDFEGYLHWLSREDGSFVARLKTDGSGIASPPVVVG  361 (377)
T ss_pred             -------------------------cccC----EE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCccccCCEEEC
Confidence                                     0001    11  3567889999999999999999999888876654433322334


Q ss_pred             ceEEEeeCCCcEEEe
Q psy12697        534 TSFASCSTDQHIHVC  548 (602)
Q Consensus       534 ~~l~~~~~d~~i~iw  548 (602)
                      +.|+.++.||.|+.|
T Consensus       362 ~~l~v~~~dG~l~~~  376 (377)
T TIGR03300       362 DGLLVQTRDGDLYAF  376 (377)
T ss_pred             CEEEEEeCCceEEEe
Confidence            578889999998875

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.49  E-value=3e-10  Score=105.17  Aligned_cols=281  Identities=13%  Similarity=0.084  Sum_probs=165.6

Q ss_pred             cceeeeecccceeeeeeeccCCceEEEEECCCCCeEEEeeC----------CceEEEEecCCceeEEEeeccCceEEEEe
Q psy12697        120 LTLPLWDVERGECLNTLTRHTEPVYSVAFSPDGKFLASGSF----------DKCVHIWSARTGQLVHSYKGTGGIFEVCW  189 (602)
Q Consensus       120 ~~i~vwd~~~~~~~~~l~~h~~~V~~~~~s~d~~~l~s~~~----------d~~v~iwd~~~~~~~~~~~~~~~~~~~~~  189 (602)
                      ++|.|.|..+++.+.++..-..+-. + +||||+.|+.+..          +..|.+||..+++.+..+..+.....   
T Consensus        27 ~~v~ViD~~~~~v~g~i~~G~~P~~-~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~---  101 (352)
T TIGR02658        27 TQVYTIDGEAGRVLGMTDGGFLPNP-V-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRF---  101 (352)
T ss_pred             ceEEEEECCCCEEEEEEEccCCCce-e-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchh---
Confidence            7899999999999999976544433 4 9999998877654          78999999999999987764221100   


Q ss_pred             CCCCCCCCCCCCccccccccccCCcceEeeCCCcceEEEEEcCCCCEEEEee-C-CCcEEEEeCCCCCCCCCccceEEEE
Q psy12697        190 NSRGTPPNPPESMEVDASIEIPQSKATKLIGHESEVFICAWNPVKDFLASGS-G-DSTARIWDMTDSTKKDPKELQIVLR  267 (602)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~s~~-~-dg~i~iw~~~~~~~~~~~~~~~~~~  267 (602)
                                                    ........++++|||++|+... . +..+.+.|+.+++........    
T Consensus       102 ------------------------------~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp----  147 (352)
T TIGR02658       102 ------------------------------LVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVP----  147 (352)
T ss_pred             ------------------------------hccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCC----
Confidence                                          0122234678999999998766 3 789999999987654222111    


Q ss_pred             EEecCCCcccCCCCceeEEeeCCCCCeEEEEeCCCeEEEEcC--CCccee----ecccccCCe-EEEEEcc-CCCEEEEE
Q psy12697        268 HCISKGGTEVPSNKDVTSLDWNNNGSFLATGSYDGYARIWTS--DGSLKS----TLGQHKGPI-FALKWNK-RGNYILSA  339 (602)
Q Consensus       268 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~--~~~~~~----~~~~~~~~i-~~~~~~~-~~~~l~~~  339 (602)
                                   ....-...+++..+  +-+.||......+  +++...    .+.....++ ..-.|.+ +|+++...
T Consensus       148 -------------~~~~vy~t~e~~~~--~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs  212 (352)
T TIGR02658       148 -------------DCYHIFPTANDTFF--MHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPT  212 (352)
T ss_pred             -------------CCcEEEEecCCccE--EEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcEEEEe
Confidence                         11111111111111  1123333332221  122110    000000000 0003455 77766665


Q ss_pred             ecCCcEEEEeCCCCceeEEeeeccCCeeeeeccCCCeEEEeeCCCeEEEEEcCCCceeeEeccCCCCeEEEEECCCCCEE
Q psy12697        340 GVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLL  419 (602)
Q Consensus       340 ~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l  419 (602)
                      .. |+|.+.|+.........                            .|.+-+..... -.-..+.+.-++++|+++.+
T Consensus       213 ~e-G~V~~id~~~~~~~~~~----------------------------~~~~~~~~~~~-~~wrP~g~q~ia~~~dg~~l  262 (352)
T TIGR02658       213 YT-GKIFQIDLSSGDAKFLP----------------------------AIEAFTEAEKA-DGWRPGGWQQVAYHRARDRI  262 (352)
T ss_pred             cC-CeEEEEecCCCcceecc----------------------------eeeeccccccc-cccCCCcceeEEEcCCCCEE
Confidence            55 88998886544322110                            11110000000 00012234448999999988


Q ss_pred             EEEEC----------CCeEEEEeCCCCeeeEeeccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEc
Q psy12697        420 ASCSD----------DMTLKIWSLDKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWN  489 (602)
Q Consensus       420 ~~~~~----------dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s  489 (602)
                      ++...          .+.|.++|..+++.+..+..                                   ...+..++++
T Consensus       263 yV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~v-----------------------------------G~~~~~iavS  307 (352)
T TIGR02658       263 YLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIEL-----------------------------------GHEIDSINVS  307 (352)
T ss_pred             EEEecCCccccccCCCCEEEEEECCCCeEEEEEeC-----------------------------------CCceeeEEEC
Confidence            87531          24799999999988877653                                   2245667788


Q ss_pred             cCCC-EEEEEe-CCCeEEEEeCCCCceeeeec
Q psy12697        490 KRGN-YILSAG-VDKTTIIWDAASGQCEQQFS  519 (602)
Q Consensus       490 ~~~~-~l~s~~-~dg~i~iwd~~~~~~~~~~~  519 (602)
                      ||++ +|++.. .++.|.+.|..+++.+..+.
T Consensus       308 ~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i~  339 (352)
T TIGR02658       308 QDAKPLLYALSTGDKTLYIFDAETGKELSSVN  339 (352)
T ss_pred             CCCCeEEEEeCCCCCcEEEEECcCCeEEeeec
Confidence            8888 777655 57889999999999998873

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.49  E-value=1.2e-11  Score=122.91  Aligned_cols=234  Identities=19%  Similarity=0.176  Sum_probs=147.5

Q ss_pred             ccceeeeecccceeeeeeeccCCceEEEEECCCCCeEEEeeCC---ceEEEEecCCceeEEEeeccCceEEEEeCCCCCC
Q psy12697        119 RLTLPLWDVERGECLNTLTRHTEPVYSVAFSPDGKFLASGSFD---KCVHIWSARTGQLVHSYKGTGGIFEVCWNSRGTP  195 (602)
Q Consensus       119 ~~~i~vwd~~~~~~~~~l~~h~~~V~~~~~s~d~~~l~s~~~d---~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (602)
                      .+.|.++|...+. .+.+..+...+...+|||||+.|+..+.+   ..|.+||+.+++....                  
T Consensus       178 ~~~l~~~d~~g~~-~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l------------------  238 (430)
T PRK00178        178 RYTLQRSDYDGAR-AVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQI------------------  238 (430)
T ss_pred             ceEEEEECCCCCC-ceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEc------------------
Confidence            5578888987544 56677788889999999999999877643   4688999988764321                  


Q ss_pred             CCCCCCccccccccccCCcceEeeCCCcceEEEEEcCCCCEEEE-eeCCC--cEEEEeCCCCCCCCCccceEEEEEEecC
Q psy12697        196 PNPPESMEVDASIEIPQSKATKLIGHESEVFICAWNPVKDFLAS-GSGDS--TARIWDMTDSTKKDPKELQIVLRHCISK  272 (602)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~s-~~~dg--~i~iw~~~~~~~~~~~~~~~~~~~~~~~  272 (602)
                                             ....+.+....|+|||+.|+. .+.+|  .|.+||+.++....      ..      
T Consensus       239 -----------------------~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~~------lt------  283 (430)
T PRK00178        239 -----------------------TNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLSR------VT------  283 (430)
T ss_pred             -----------------------cCCCCCcCCeEECCCCCEEEEEEccCCCceEEEEECCCCCeEE------cc------
Confidence                                   112223446789999988774 44455  57777887654211      00      


Q ss_pred             CCcccCCCCceeEEeeCCCCCeEEEEeC-CC--eEEEEcCCCcceeecccccCCeEEEEEccCCCEEEEEecC-C--cEE
Q psy12697        273 GGTEVPSNKDVTSLDWNNNGSFLATGSY-DG--YARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVD-K--TTI  346 (602)
Q Consensus       273 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg--~i~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-g--~i~  346 (602)
                           .+........|+|||+.++..+. +|  .|.++++.+.....+...........|+|+|+.|+..+.+ +  .|.
T Consensus       284 -----~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~  358 (430)
T PRK00178        284 -----NHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFVGNYNARPRLSADGKTLVMVHRQDGNFHVA  358 (430)
T ss_pred             -----cCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEEccCCceEEE
Confidence                 01233556789999998877654 33  5777777654443333222334467899999999877643 3  578


Q ss_pred             EEeCCCCceeEEeeeccCCeeeeeccCCCeEE-EeeC-C--CeEEEEEcCCCceeeEeccCCCCeEEEEECC
Q psy12697        347 IWDAASGQCEQQFSFHSAPALDVDWQSNTSFA-SCST-D--QHIHVCKLHSDKPVKSFEGHTNEVNAIKWDP  414 (602)
Q Consensus       347 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~--~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~  414 (602)
                      +||+.+++... +.. ........|+|++..+ ..+. +  ..++++++... ....+..+.+.+...+|+|
T Consensus       359 ~~dl~tg~~~~-lt~-~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g~-~~~~l~~~~g~~~~p~ws~  427 (430)
T PRK00178        359 AQDLQRGSVRI-LTD-TSLDESPSVAPNGTMLIYATRQQGRGVLMLVSINGR-VRLPLPTAQGEVREPSWSP  427 (430)
T ss_pred             EEECCCCCEEE-ccC-CCCCCCceECCCCCEEEEEEecCCceEEEEEECCCC-ceEECcCCCCCcCCCccCC
Confidence            89998876533 221 1222355788886633 3332 2  34677777543 3344444555666677776

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=99.48  E-value=1e-10  Score=114.20  Aligned_cols=294  Identities=12%  Similarity=0.074  Sum_probs=183.3

Q ss_pred             CCEEEEeeCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEeeCCCCCeEEEEeCCCeEEEEcCC-Cc
Q psy12697        234 KDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFLATGSYDGYARIWTSD-GS  312 (602)
Q Consensus       234 ~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~-~~  312 (602)
                      +..+++++.++.+..+|..+++.........                .......  .++..+++++.+|.+..+|.. |+
T Consensus        65 ~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~----------------~~~~~p~--v~~~~v~v~~~~g~l~ald~~tG~  126 (377)
T TIGR03300        65 GGKVYAADADGTVVALDAETGKRLWRVDLDE----------------RLSGGVG--ADGGLVFVGTEKGEVIALDAEDGK  126 (377)
T ss_pred             CCEEEEECCCCeEEEEEccCCcEeeeecCCC----------------CcccceE--EcCCEEEEEcCCCEEEEEECCCCc
Confidence            6678888889999999998887654322221                0001111  246678888999999999974 66


Q ss_pred             ceeecccccCCeEEEEEccCCCEEEEEecCCcEEEEeCCCCceeEEeeeccCCee-----eeeccCCCeEEEeeCCCeEE
Q psy12697        313 LKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPAL-----DVDWQSNTSFASCSTDQHIH  387 (602)
Q Consensus       313 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~i~  387 (602)
                      ........ ..+.+.-.. .+..++.++.+|.+..||.++++.+..+........     .... .++.++++..++.+.
T Consensus       127 ~~W~~~~~-~~~~~~p~v-~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~-~~~~v~~~~~~g~v~  203 (377)
T TIGR03300       127 ELWRAKLS-SEVLSPPLV-ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVI-ADGGVLVGFAGGKLV  203 (377)
T ss_pred             EeeeeccC-ceeecCCEE-ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEE-ECCEEEEECCCCEEE
Confidence            55443322 222211111 245677788899999999999998877654332211     1111 235678888899999


Q ss_pred             EEEcCCCceeeEeccCCC----C---eEEEEECC--CCCEEEEEECCCeEEEEeCCCCeeeEeeccccccEEEEEECCCC
Q psy12697        388 VCKLHSDKPVKSFEGHTN----E---VNAIKWDP--QGLLLASCSDDMTLKIWSLDKDNCVHDLQAHNKEIYTIKWSPTG  458 (602)
Q Consensus       388 i~d~~~~~~~~~~~~~~~----~---i~~~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~  458 (602)
                      .+|..+++.+........    .   ...+.-+|  .+..+++++.+|.++.||..+++.+.......            
T Consensus       204 ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~~~------------  271 (377)
T TIGR03300       204 ALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLWKRDASS------------  271 (377)
T ss_pred             EEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEEEeeccCC------------
Confidence            999999887654321100    0   00111112  34578888899999999999987765543100            


Q ss_pred             CCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeeecccCC-CeeEeeecCCceEE
Q psy12697        459 PETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSA-PALDVDWQSNTSFA  537 (602)
Q Consensus       459 ~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-~v~~~~~s~~~~l~  537 (602)
                                          ..    .  ...++..++.++.||.+..+|..+|+.+........ ...+.... ++.++
T Consensus       272 --------------------~~----~--p~~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i~-g~~l~  324 (377)
T TIGR03300       272 --------------------YQ----G--PAVDDNRLYVTDADGVVVALDRRSGSELWKNDELKYRQLTAPAVV-GGYLV  324 (377)
T ss_pred             --------------------cc----C--ceEeCCEEEEECCCCeEEEEECCCCcEEEccccccCCccccCEEE-CCEEE
Confidence                                00    0  011456677888999999999999988765532111 12222221 33888


Q ss_pred             EeeCCCcEEEeecCCCCceeeeecccccceEEEEecCCcE-EEEEECCCCCeEEEeccCCeEEe
Q psy12697        538 SCSTDQHIHVCKLHSDKPVKSFEGHTTGQLVHSYKGTGGI-FEVCWNSRGDKVGASASDGSVFK  600 (602)
Q Consensus       538 ~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~i-~~l~~spdg~~l~~~~~dg~v~i  600 (602)
                      +++.+|.|+++|..+++.+..++.+.           ..+ .+..+.  ++.|++++.||.|+.
T Consensus       325 ~~~~~G~l~~~d~~tG~~~~~~~~~~-----------~~~~~sp~~~--~~~l~v~~~dG~l~~  375 (377)
T TIGR03300       325 VGDFEGYLHWLSREDGSFVARLKTDG-----------SGIASPPVVV--GDGLLVQTRDGDLYA  375 (377)
T ss_pred             EEeCCCEEEEEECCCCCEEEEEEcCC-----------CccccCCEEE--CCEEEEEeCCceEEE
Confidence            99999999999988887776665432           111 222222  345888999998764

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>KOG2041|consensus

Probab=99.48  E-value=1.4e-11  Score=117.60  Aligned_cols=430  Identities=14%  Similarity=0.199  Sum_probs=256.6

Q ss_pred             eeeeeccCCceEEEEECCCCCeEEEeeCCceEEEEecCCceeEE---EeeccCceEEEEeCCCCCCCCCCCCcccccccc
Q psy12697        133 LNTLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVH---SYKGTGGIFEVCWNSRGTPPNPPESMEVDASIE  209 (602)
Q Consensus       133 ~~~l~~h~~~V~~~~~s~d~~~l~s~~~d~~v~iwd~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (602)
                      -++|.||++.|.-+.|+.+.+.|-|...+|-|.||=+-.|....   .-+..+-+.+++|+.+|..+......+....-.
T Consensus        64 NQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGs  143 (1189)
T KOG2041|consen   64 NQTLEGHNASVMVVTWNENNQKLTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGS  143 (1189)
T ss_pred             hhhhccCcceEEEEEeccccccccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEe
Confidence            36789999999999999999999999999999999887764322   222344578999999987654433322211111


Q ss_pred             ccCCcc--eEeeCCCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEe
Q psy12697        210 IPQSKA--TKLIGHESEVFICAWNPVKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLD  287 (602)
Q Consensus       210 ~~~~~~--~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  287 (602)
                      +.....  ..+.+  .....+.|++|.+.++.+-.+|.+.++|.+..-.............     +........|..+.
T Consensus       144 vdGNRIwgKeLkg--~~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~t-----g~~s~~~~kia~i~  216 (1189)
T KOG2041|consen  144 VDGNRIWGKELKG--QLLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGT-----GIFSNFPTKIAEIE  216 (1189)
T ss_pred             eccceecchhcch--heccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeee-----eeecCCCcccccee
Confidence            111110  11111  1234689999999988888899999999865432211111101110     11111123355566


Q ss_pred             eC--------CCCCeEEEEeCCCeEEEEcCCCcceeecccccCCeEEEEEccCCCEEEEEecCC---------cEEEEeC
Q psy12697        288 WN--------NNGSFLATGSYDGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDK---------TTIIWDA  350 (602)
Q Consensus       288 ~~--------~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg---------~i~~wd~  350 (602)
                      |.        |+...|+++..+|.+.+-...+.....+....-.+....|+++|..|+.++.+.         .|.++. 
T Consensus       217 w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~Pvv~dtgm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fys-  295 (1189)
T KOG2041|consen  217 WNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEPVVVDTGMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYS-  295 (1189)
T ss_pred             eccCccccCCCCCCEEEEEEcCceehhhhhcCCCCCeEEecccEeecceecCCCcEEEEccCcccccCccccceEEEec-
Confidence            53        477899999999999887655433333333446789999999999999887542         445544 


Q ss_pred             CCCceeEEeeeccCCeeeeeccCCCeEEEeeCCC--------------------------------eEEEEEcCCCcee-
Q psy12697        351 ASGQCEQQFSFHSAPALDVDWQSNTSFASCSTDQ--------------------------------HIHVCKLHSDKPV-  397 (602)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------------~i~i~d~~~~~~~-  397 (602)
                      .-|+.+..+......++.++|-..+.-++-.-|+                                .|.+||..+.+.. 
T Consensus       296 p~G~i~gtlkvpg~~It~lsWEg~gLriA~AvdsfiyfanIRP~ykWgy~e~TvVy~y~~~e~p~y~i~Fwdtk~nek~v  375 (1189)
T KOG2041|consen  296 PYGHIVGTLKVPGSCITGLSWEGTGLRIAIAVDSFIYFANIRPEYKWGYIEETVVYVYQKEELPQYGIMFWDTKTNEKTV  375 (1189)
T ss_pred             cchhheEEEecCCceeeeeEEcCCceEEEEEecceEEEEeecccceEEEeeeEEEEEEccCCCcceEEEEEecccChhhh
Confidence            4577778888888888888886655422222222                                3455665543211 


Q ss_pred             eEec--------------------cC---------CCCeEEEEEC--------------------CCCCEEEEEECCCeE
Q psy12697        398 KSFE--------------------GH---------TNEVNAIKWD--------------------PQGLLLASCSDDMTL  428 (602)
Q Consensus       398 ~~~~--------------------~~---------~~~i~~~~~~--------------------~~~~~l~~~~~dg~i  428 (602)
                      +...                    +|         .+.+..+.+.                    -++..++.+|.+ .+
T Consensus       376 K~V~~~~~~a~~~ehCvL~~~~d~~~i~e~s~le~~~~~~~l~LCNSIGT~lD~kytdirP~Fv~vn~~~vviAS~e-~~  454 (1189)
T KOG2041|consen  376 KTVTHFENMAFYREHCVLINRQDDGVIPEYSTLENRSRVYFLQLCNSIGTSLDYKYTDIRPKFVCVNGICVVIASEE-RY  454 (1189)
T ss_pred             hhhcceeehheecccEEEEeccccCCCcchhhhhcccceEEEeeecccCCcCCCCcceeeeeEEEecceEEEEeccc-cE
Confidence            1110                    00         0011111110                    123345555554 46


Q ss_pred             EEEeCCCCeeeEeecc---ccccEEEEEECCCCCCCCCCCcceeeee-eeccCCccCCeEEEEEccCCCEEEEEeCCCeE
Q psy12697        429 KIWSLDKDNCVHDLQA---HNKEIYTIKWSPTGPETSNPNMSLIFIL-KSTLGQHKGPIFALKWNKRGNYILSAGVDKTT  504 (602)
Q Consensus       429 ~iwd~~~~~~~~~~~~---~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i  504 (602)
                      .+|.....+....+..   +...-..+...|.+      ........ ..++.+...+|.+++.|.  ++|..+-..|.|
T Consensus       455 ~iWhy~~pK~~s~l~~~k~rkegr~h~Ddtp~g------a~d~~l~ys~kt~~G~~DpICAl~~sd--k~l~vareSG~I  526 (1189)
T KOG2041|consen  455 FIWHYVLPKFNSVLAGVKIRKEGRFHGDDTPEG------AQDRTLEYSTKTLLGSKDPICALCISD--KFLMVARESGGI  526 (1189)
T ss_pred             EEEEEeccchhhhhhhhhhcccccccCCCCccc------hhhceeeccceeeccCCCcceeeeecc--eEEEEEeccCce
Confidence            7777655443332221   11110111111111      11111222 356778889999998874  688999999999


Q ss_pred             EEEeCCCCceeeeecccCCCeeEeeecCCc-eEEEeeCCCcEEEeecCC---CCceeeeecccccceEEEEecCCcEEEE
Q psy12697        505 IIWDAASGQCEQQFSFHSAPALDVDWQSNT-SFASCSTDQHIHVCKLHS---DKPVKSFEGHTTGQLVHSYKGTGGIFEV  580 (602)
Q Consensus       505 ~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~-~l~~~~~d~~i~iw~~~~---~~~~~~~~~~~~~~~~~~~~~~~~i~~l  580 (602)
                      .-|.+.+..+..... -+..+.++...-+. +++....-|.+.+.|+.-   +..+..+...          ....|+++
T Consensus       527 ~rySl~nv~l~n~y~-~n~~~y~~~lNCnstRlAiId~~gv~tf~dLd~d~~g~ql~~~~~~----------errDVWd~  595 (1189)
T KOG2041|consen  527 YRYSLNNVVLTNSYP-VNPSIYSIKLNCNSTRLAIIDLVGVVTFQDLDYDFDGDQLKLIYTS----------ERRDVWDY  595 (1189)
T ss_pred             EEEEecceeeeeccc-cCchheeEeeccCcchhhhhhhhceeeeeecccccCcceeeeeehh----------hhhhhhhh
Confidence            999999887776655 45668888888877 888888888888888762   2222211110          13457888


Q ss_pred             EECCCCCeEE
Q psy12697        581 CWNSRGDKVG  590 (602)
Q Consensus       581 ~~spdg~~l~  590 (602)
                      .|..|...|+
T Consensus       596 ~Wa~dNp~ll  605 (1189)
T KOG2041|consen  596 EWAQDNPNLL  605 (1189)
T ss_pred             hhccCCchHH
Confidence            8887765443

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.48  E-value=3.9e-11  Score=118.40  Aligned_cols=231  Identities=12%  Similarity=0.136  Sum_probs=143.4

Q ss_pred             eEEEEcCCCcceeecccccCCeEEEEEccCCCEEEEEecC---CcEEEEeCCCCceeEEeeeccCCeeeeeccCCCe-EE
Q psy12697        303 YARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVD---KTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTS-FA  378 (602)
Q Consensus       303 ~i~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---g~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  378 (602)
                      .+.++|.++.....+..+...+....|+|||+.|+..+.+   ..|.+||+.+++.... ...........|+|++. ++
T Consensus       199 ~l~i~d~dG~~~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~l-t~~~g~~~~~~wSPDG~~La  277 (448)
T PRK04792        199 QLMIADYDGYNEQMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKV-TSFPGINGAPRFSPDGKKLA  277 (448)
T ss_pred             EEEEEeCCCCCceEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEe-cCCCCCcCCeeECCCCCEEE
Confidence            5777788776666666677889999999999999876543   2588889988765332 22233345678999865 44


Q ss_pred             E-eeCCC--eEEEEEcCCCceeeEeccCCCCeEEEEECCCCCEEEEEEC-CC--eEEEEeCCCCeeeEeeccccccEEEE
Q psy12697        379 S-CSTDQ--HIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSD-DM--TLKIWSLDKDNCVHDLQAHNKEIYTI  452 (602)
Q Consensus       379 ~-~~~~~--~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg--~i~iwd~~~~~~~~~~~~~~~~i~~~  452 (602)
                      . ...++  .|+++|+.+++. ..+..+.......+|+|||+.|+..+. ++  .|.++|+.+++... +.         
T Consensus       278 ~~~~~~g~~~Iy~~dl~tg~~-~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~-Lt---------  346 (448)
T PRK04792        278 LVLSKDGQPEIYVVDIATKAL-TRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSR-LT---------  346 (448)
T ss_pred             EEEeCCCCeEEEEEECCCCCe-EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-Ee---------
Confidence            3 44555  488889887764 444445556678899999998877664 33  46666666554221 11         


Q ss_pred             EECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCC-C--eEEEEeCCCCceeeeecccCCCeeEee
Q psy12697        453 KWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVD-K--TTIIWDAASGQCEQQFSFHSAPALDVD  529 (602)
Q Consensus       453 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d-g--~i~iwd~~~~~~~~~~~~~~~~v~~~~  529 (602)
                       +.                        .......+|+|||++|+..+.+ +  .|.++|+.+++... +... .......
T Consensus       347 -~~------------------------g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~-lt~~-~~d~~ps  399 (448)
T PRK04792        347 -FE------------------------GEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQV-LTST-RLDESPS  399 (448)
T ss_pred             -cC------------------------CCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeEE-ccCC-CCCCCce
Confidence             10                        0111235788899988776553 3  46667888776533 2222 1223458


Q ss_pred             ecCCc-eEEEee-CCCc--EEEeecCCCCceeeeecccccceEEEEecCCcEEEEEECC
Q psy12697        530 WQSNT-SFASCS-TDQH--IHVCKLHSDKPVKSFEGHTTGQLVHSYKGTGGIFEVCWNS  584 (602)
Q Consensus       530 ~s~~~-~l~~~~-~d~~--i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp  584 (602)
                      |+||| .|+..+ .++.  +++++. +++....+...           .+.+...+|+|
T Consensus       400 ~spdG~~I~~~~~~~g~~~l~~~~~-~G~~~~~l~~~-----------~g~~~~p~Wsp  446 (448)
T PRK04792        400 VAPNGTMVIYSTTYQGKQVLAAVSI-DGRFKARLPAG-----------QGEVKSPAWSP  446 (448)
T ss_pred             ECCCCCEEEEEEecCCceEEEEEEC-CCCceEECcCC-----------CCCcCCCccCC
Confidence            99999 555544 3443  666665 33333333221           24567778887

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.47  E-value=2.1e-09  Score=102.78  Aligned_cols=282  Identities=15%  Similarity=0.162  Sum_probs=173.4

Q ss_pred             ccceeeeec--ccceeeeee-eccCCceEEEEECCCCCeEEEeeC----CceEEEEecCCc--eeEEEeeccCceEEEEe
Q psy12697        119 RLTLPLWDV--ERGECLNTL-TRHTEPVYSVAFSPDGKFLASGSF----DKCVHIWSARTG--QLVHSYKGTGGIFEVCW  189 (602)
Q Consensus       119 ~~~i~vwd~--~~~~~~~~l-~~h~~~V~~~~~s~d~~~l~s~~~----d~~v~iwd~~~~--~~~~~~~~~~~~~~~~~  189 (602)
                      ...|.+|++  ++++....- ..-......++++|++++|.+...    ++.|..|++...  ++.. +           
T Consensus        12 ~~gI~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~-~-----------   79 (345)
T PF10282_consen   12 GGGIYVFRFDEETGTLTLVQTVAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTL-L-----------   79 (345)
T ss_dssp             STEEEEEEEETTTTEEEEEEEEEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEE-E-----------
T ss_pred             CCcEEEEEEcCCCCCceEeeeecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEE-e-----------
Confidence            356777777  455543221 224456677999999999998876    578988888763  3221 1           


Q ss_pred             CCCCCCCCCCCCccccccccccCCcceEeeCCCcceEEEEEcCCCCEEEEeeC-CCcEEEEeCCCCCCCCCccceEEEEE
Q psy12697        190 NSRGTPPNPPESMEVDASIEIPQSKATKLIGHESEVFICAWNPVKDFLASGSG-DSTARIWDMTDSTKKDPKELQIVLRH  268 (602)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~  268 (602)
                                                ............++++|++++|+++.. +|.+.++++.........  .....+
T Consensus        80 --------------------------~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~--~~~~~~  131 (345)
T PF10282_consen   80 --------------------------NSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEV--VQTVRH  131 (345)
T ss_dssp             --------------------------EEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEE--EEEEES
T ss_pred             --------------------------eeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCccccee--eeeccc
Confidence                                      111113345567899999999998874 899999999875321111  001111


Q ss_pred             EecCCCcccCCCCceeEEeeCCCCCeEEEEeC-CCeEEEEcCCCcc--ee---ec-ccccCCeEEEEEccCCCEEEEEe-
Q psy12697        269 CISKGGTEVPSNKDVTSLDWNNNGSFLATGSY-DGYARIWTSDGSL--KS---TL-GQHKGPIFALKWNKRGNYILSAG-  340 (602)
Q Consensus       269 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~i~i~~~~~~~--~~---~~-~~~~~~i~~~~~~~~~~~l~~~~-  340 (602)
                      ................++.++|+++++++... ...|.+|+.+...  +.   .+ .......+.+.|+|+++++++.. 
T Consensus       132 ~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e  211 (345)
T PF10282_consen  132 EGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNE  211 (345)
T ss_dssp             EEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEET
T ss_pred             CCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecC
Confidence            11111111223456789999999998887654 3578898876332  21   11 23445678999999999887655 


Q ss_pred             cCCcEEEEeCC--CCce--eEEeeec------cCCeeeeeccCCCeEEE--eeCCCeEEEEEcCC--Cc--eeeEeccCC
Q psy12697        341 VDKTTIIWDAA--SGQC--EQQFSFH------SAPALDVDWQSNTSFAS--CSTDQHIHVCKLHS--DK--PVKSFEGHT  404 (602)
Q Consensus       341 ~dg~i~~wd~~--~~~~--~~~~~~~------~~~~~~~~~~~~~~~~~--~~~~~~i~i~d~~~--~~--~~~~~~~~~  404 (602)
                      .++.|.++++.  ++..  .......      ......+.++|++.++.  ....+.|.+|++..  ++  .+..+....
T Consensus       212 ~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G  291 (345)
T PF10282_consen  212 LSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGG  291 (345)
T ss_dssp             TTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESS
T ss_pred             CCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCC
Confidence            57789999887  4432  2222211      11466788898876443  34567899999942  33  333444444


Q ss_pred             CCeEEEEECCCCCEEEEEEC-CCeEEEEeCC--CCeeeE
Q psy12697        405 NEVNAIKWDPQGLLLASCSD-DMTLKIWSLD--KDNCVH  440 (602)
Q Consensus       405 ~~i~~~~~~~~~~~l~~~~~-dg~i~iwd~~--~~~~~~  440 (602)
                      ...+.++++|+|++|+++.. ++.|.+|+++  ++....
T Consensus       292 ~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~~  330 (345)
T PF10282_consen  292 KFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKLTP  330 (345)
T ss_dssp             SSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEE
T ss_pred             CCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcEEE
Confidence            55899999999999998874 5789999764  555433

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.47  E-value=1.7e-11  Score=121.86  Aligned_cols=231  Identities=20%  Similarity=0.205  Sum_probs=148.6

Q ss_pred             eccceeeeecccceeeeeeeccCCceEEEEECCCCCeEEEeeCC---ceEEEEecCCceeEEEeeccCceEEEEeCCCCC
Q psy12697        118 HRLTLPLWDVERGECLNTLTRHTEPVYSVAFSPDGKFLASGSFD---KCVHIWSARTGQLVHSYKGTGGIFEVCWNSRGT  194 (602)
Q Consensus       118 ~~~~i~vwd~~~~~~~~~l~~h~~~V~~~~~s~d~~~l~s~~~d---~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (602)
                      ....|.++|.. +...+.+..+...+...+|||||++|+.++.+   ..|.+||+.+++...                  
T Consensus       168 ~~~~l~~~d~~-g~~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~------------------  228 (417)
T TIGR02800       168 RRYELQVADYD-GANPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK------------------  228 (417)
T ss_pred             CcceEEEEcCC-CCCCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE------------------
Confidence            45678888885 44456677788889999999999999987654   489999998875432                  


Q ss_pred             CCCCCCCccccccccccCCcceEeeCCCcceEEEEEcCCCCEEEE-eeCCC--cEEEEeCCCCCCCCCccceEEEEEEec
Q psy12697        195 PPNPPESMEVDASIEIPQSKATKLIGHESEVFICAWNPVKDFLAS-GSGDS--TARIWDMTDSTKKDPKELQIVLRHCIS  271 (602)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~s-~~~dg--~i~iw~~~~~~~~~~~~~~~~~~~~~~  271 (602)
                                             +..+...+.+++|+||++.|+. .+.++  .|.+|++.++.....            
T Consensus       229 -----------------------~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~~l------------  273 (417)
T TIGR02800       229 -----------------------VASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLTRL------------  273 (417)
T ss_pred             -----------------------eecCCCCccceEECCCCCEEEEEECCCCCccEEEEECCCCCEEEC------------
Confidence                                   1223445567899999987764 44444  588888876532110            


Q ss_pred             CCCcccCCCCceeEEeeCCCCCeEEEEeCC-C--eEEEEcCCCcceeecccccCCeEEEEEccCCCEEEEEecCC---cE
Q psy12697        272 KGGTEVPSNKDVTSLDWNNNGSFLATGSYD-G--YARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDK---TT  345 (602)
Q Consensus       272 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-g--~i~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg---~i  345 (602)
                           ..+........|+|+|+.|+..+.. +  .|.++++.+.....+..+........|+|++++++.++.++   .|
T Consensus       274 -----~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i  348 (417)
T TIGR02800       274 -----TNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRRLTFRGGYNASPSWSPDGDLIAFVHREGGGFNI  348 (417)
T ss_pred             -----CCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccCeEECCCCCEEEEEEccCCceEE
Confidence                 0011234466899999988776543 3  57778877655555555566677889999999999888775   78


Q ss_pred             EEEeCCCCceeEEeeeccCCeeeeeccCCCe-EEEeeCCC---eEEEEEcCCCceeeEeccCCCCeEEE
Q psy12697        346 IIWDAASGQCEQQFSFHSAPALDVDWQSNTS-FASCSTDQ---HIHVCKLHSDKPVKSFEGHTNEVNAI  410 (602)
Q Consensus       346 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~---~i~i~d~~~~~~~~~~~~~~~~i~~~  410 (602)
                      .+||+.++.... +.. ........|+|++. ++..+.++   .+++.+.. ++....+..+.+.+...
T Consensus       349 ~~~d~~~~~~~~-l~~-~~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~g~~~~~  414 (417)
T TIGR02800       349 AVMDLDGGGERV-LTD-TGLDESPSFAPNGRMILYATTRGGRGVLGLVSTD-GRFRARLPLGNGDVREP  414 (417)
T ss_pred             EEEeCCCCCeEE-ccC-CCCCCCceECCCCCEEEEEEeCCCcEEEEEEECC-CceeeECCCCCCCcCCC
Confidence            899988765432 221 12234557888764 44444332   34554433 33344444333334333

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.47  E-value=4.1e-11  Score=119.06  Aligned_cols=209  Identities=17%  Similarity=0.206  Sum_probs=140.0

Q ss_pred             CeEEEEcCCCcceeecccccCCeEEEEEccCCCEEEEEecC---CcEEEEeCCCCceeEEeeeccCCeeeeeccCCCe-E
Q psy12697        302 GYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVD---KTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTS-F  377 (602)
Q Consensus       302 g~i~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---g~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  377 (602)
                      ..|.++|.++.....+..+...+....|+|+|++|+.++.+   ..|.+||+.+++.... .........+.|+|++. +
T Consensus       170 ~~l~~~d~~g~~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~-~~~~~~~~~~~~spDg~~l  248 (417)
T TIGR02800       170 YELQVADYDGANPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKV-ASFPGMNGAPAFSPDGSKL  248 (417)
T ss_pred             ceEEEEcCCCCCCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEe-ecCCCCccceEECCCCCEE
Confidence            46888888776666666677788999999999999887654   4799999998865433 23344566788999865 4


Q ss_pred             EE-eeCCC--eEEEEEcCCCceeeEeccCCCCeEEEEECCCCCEEEEEECC-C--eEEEEeCCCCeeeEeeccccccEEE
Q psy12697        378 AS-CSTDQ--HIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDD-M--TLKIWSLDKDNCVHDLQAHNKEIYT  451 (602)
Q Consensus       378 ~~-~~~~~--~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-g--~i~iwd~~~~~~~~~~~~~~~~i~~  451 (602)
                      +. ...++  .|++|++.+++. ..+..+........|+|+|+.|+..+.. +  .|.++|+.+++.. .+..       
T Consensus       249 ~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~-~l~~-------  319 (417)
T TIGR02800       249 AVSLSKDGNPDIYVMDLDGKQL-TRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVR-RLTF-------  319 (417)
T ss_pred             EEEECCCCCccEEEEECCCCCE-EECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEE-Eeec-------
Confidence            43 33333  588999987754 3344454445577899999988876653 3  5777777654321 1111       


Q ss_pred             EEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCCC---eEEEEeCCCCceeeeecccCCCeeEe
Q psy12697        452 IKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDK---TTIIWDAASGQCEQQFSFHSAPALDV  528 (602)
Q Consensus       452 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg---~i~iwd~~~~~~~~~~~~~~~~v~~~  528 (602)
                                                 +...+....|+|+|++++.++.++   .|.+||+.++.... +... ......
T Consensus       320 ---------------------------~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~~-l~~~-~~~~~p  370 (417)
T TIGR02800       320 ---------------------------RGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGERV-LTDT-GLDESP  370 (417)
T ss_pred             ---------------------------CCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeEE-ccCC-CCCCCc
Confidence                                       122344567888999999888776   79999998765432 3222 234566


Q ss_pred             eecCCc-eEEEeeCCC---cEEEee
Q psy12697        529 DWQSNT-SFASCSTDQ---HIHVCK  549 (602)
Q Consensus       529 ~~s~~~-~l~~~~~d~---~i~iw~  549 (602)
                      .|+||+ .|+..+.++   .+++.+
T Consensus       371 ~~spdg~~l~~~~~~~~~~~l~~~~  395 (417)
T TIGR02800       371 SFAPNGRMILYATTRGGRGVLGLVS  395 (417)
T ss_pred             eECCCCCEEEEEEeCCCcEEEEEEE
Confidence            899999 776666554   344444

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.46  E-value=3.7e-11  Score=119.37  Aligned_cols=218  Identities=16%  Similarity=0.178  Sum_probs=138.9

Q ss_pred             eeCCCcceEEEEEcCCCCEEEEeeCC---CcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEeeCCCCCe
Q psy12697        218 LIGHESEVFICAWNPVKDFLASGSGD---STARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSF  294 (602)
Q Consensus       218 l~~h~~~v~~~~~~~~~~~l~s~~~d---g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  294 (602)
                      +..+...+....|+|||+.|+..+.+   ..|.+|++.++......                 .....+....|+|||+.
T Consensus       194 l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~-----------------~~~g~~~~~~~SpDG~~  256 (430)
T PRK00178        194 LLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQIT-----------------NFEGLNGAPAWSPDGSK  256 (430)
T ss_pred             EecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEcc-----------------CCCCCcCCeEECCCCCE
Confidence            44567788999999999998876643   36888898776432110                 01233456899999998


Q ss_pred             EEEE-eCCC--eEEEEcCCCcceeecccccCCeEEEEEccCCCEEEEEec-CC--cEEEEeCCCCceeEEeeeccCCeee
Q psy12697        295 LATG-SYDG--YARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGV-DK--TTIIWDAASGQCEQQFSFHSAPALD  368 (602)
Q Consensus       295 l~~~-~~dg--~i~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg--~i~~wd~~~~~~~~~~~~~~~~~~~  368 (602)
                      |+.. ..+|  .|.+||+.+.....+..+........|+|||+.|+..+. +|  .|.++|+.+++... +.........
T Consensus       257 la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~-lt~~~~~~~~  335 (430)
T PRK00178        257 LAFVLSKDGNPEIYVMDLASRQLSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAER-VTFVGNYNAR  335 (430)
T ss_pred             EEEEEccCCCceEEEEECCCCCeEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-eecCCCCccc
Confidence            8754 4444  688889887666666666666777899999998876653 33  57777887776433 2222223345


Q ss_pred             eeccCCCeEE-EeeC-CC--eEEEEEcCCCceeeEeccCCCCeEEEEECCCCCEEEEEECC---CeEEEEeCCCCeeeEe
Q psy12697        369 VDWQSNTSFA-SCST-DQ--HIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDD---MTLKIWSLDKDNCVHD  441 (602)
Q Consensus       369 ~~~~~~~~~~-~~~~-~~--~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~  441 (602)
                      ..|+|++..+ .... ++  .|.++|+.+++... +.. ........|+|+|+.++..+.+   ..|.++++.. .....
T Consensus       336 ~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~-lt~-~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g-~~~~~  412 (430)
T PRK00178        336 PRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRI-LTD-TSLDESPSVAPNGTMLIYATRQQGRGVLMLVSING-RVRLP  412 (430)
T ss_pred             eEECCCCCEEEEEEccCCceEEEEEECCCCCEEE-ccC-CCCCCCceECCCCCEEEEEEecCCceEEEEEECCC-CceEE
Confidence            6788886533 3332 33  58889998876433 221 1222356899999999877654   3466777643 33334


Q ss_pred             eccccccEEEEEECC
Q psy12697        442 LQAHNKEIYTIKWSP  456 (602)
Q Consensus       442 ~~~~~~~i~~~~~~~  456 (602)
                      +..+.+.+...+|+|
T Consensus       413 l~~~~g~~~~p~ws~  427 (430)
T PRK00178        413 LPTAQGEVREPSWSP  427 (430)
T ss_pred             CcCCCCCcCCCccCC
Confidence            444444455555554

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.45  E-value=1.6e-09  Score=103.55  Aligned_cols=246  Identities=11%  Similarity=0.170  Sum_probs=157.6

Q ss_pred             CCceeEEeeCCCCCeEEEEeC----CCeEEEEcCCCc---c--eeecccccCCeEEEEEccCCCEEEEEe-cCCcEEEEe
Q psy12697        280 NKDVTSLDWNNNGSFLATGSY----DGYARIWTSDGS---L--KSTLGQHKGPIFALKWNKRGNYILSAG-VDKTTIIWD  349 (602)
Q Consensus       280 ~~~i~~~~~~~~~~~l~~~~~----dg~i~i~~~~~~---~--~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~~wd  349 (602)
                      ......++++|++++|.+...    +|.|..|.+...   +  +............++++|++++|+++. .+|.+.+++
T Consensus        36 ~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~  115 (345)
T PF10282_consen   36 GENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFP  115 (345)
T ss_dssp             SSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred             CCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEE
Confidence            356788999999999999877    468888886532   2  222222345567899999999999887 489999999


Q ss_pred             CCC-CceeEEe--e-----------eccCCeeeeeccCCCeEEE--eeCCCeEEEEEcCCCc--e--eeEec-cCCCCeE
Q psy12697        350 AAS-GQCEQQF--S-----------FHSAPALDVDWQSNTSFAS--CSTDQHIHVCKLHSDK--P--VKSFE-GHTNEVN  408 (602)
Q Consensus       350 ~~~-~~~~~~~--~-----------~~~~~~~~~~~~~~~~~~~--~~~~~~i~i~d~~~~~--~--~~~~~-~~~~~i~  408 (602)
                      +.. +......  .           .......++.++|++.++.  ......|.+|++....  .  ...+. ......+
T Consensus       116 l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPR  195 (345)
T PF10282_consen  116 LDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPR  195 (345)
T ss_dssp             ECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEE
T ss_pred             ccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCc
Confidence            987 4433321  1           1123466788999866333  3345689999987654  2  12222 3345689


Q ss_pred             EEEECCCCCEEEEEEC-CCeEEEEeCC--CCeeeEeeccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEE
Q psy12697        409 AIKWDPQGLLLASCSD-DMTLKIWSLD--KDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFA  485 (602)
Q Consensus       409 ~~~~~~~~~~l~~~~~-dg~i~iwd~~--~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  485 (602)
                      .++|+|+++++.+..+ ++.|.++++.  ++.. ...       ..+...|.+                  .........
T Consensus       196 h~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~-~~~-------~~~~~~~~~------------------~~~~~~~~~  249 (345)
T PF10282_consen  196 HLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSL-TEI-------QTISTLPEG------------------FTGENAPAE  249 (345)
T ss_dssp             EEEE-TTSSEEEEEETTTTEEEEEEEETTTTEE-EEE-------EEEESCETT------------------SCSSSSEEE
T ss_pred             EEEEcCCcCEEEEecCCCCcEEEEeecccCCce-eEE-------EEeeecccc------------------ccccCCcee
Confidence            9999999998877654 6789999887  3321 111       111111110                  011236778


Q ss_pred             EEEccCCCEEEEEe-CCCeEEEEeCC--CCce--eeeecccCCCeeEeeecCCc-eEEEee-CCCcEEEeecC
Q psy12697        486 LKWNKRGNYILSAG-VDKTTIIWDAA--SGQC--EQQFSFHSAPALDVDWQSNT-SFASCS-TDQHIHVCKLH  551 (602)
Q Consensus       486 i~~s~~~~~l~s~~-~dg~i~iwd~~--~~~~--~~~~~~~~~~v~~~~~s~~~-~l~~~~-~d~~i~iw~~~  551 (602)
                      |+++|||++|.++. .++.|.+|++.  ++++  +..+.........++++|+| +|+++. .++.|.+|+++
T Consensus       250 i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d  322 (345)
T PF10282_consen  250 IAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDID  322 (345)
T ss_dssp             EEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEE
T ss_pred             EEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEe
Confidence            99999999988765 46789999983  3433  34444344557899999999 666555 67789999874

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG4547|consensus

Probab=99.45  E-value=2.4e-11  Score=113.95  Aligned_cols=187  Identities=15%  Similarity=0.202  Sum_probs=148.4

Q ss_pred             ccCCCEEEEEecCCcEEEEeCCCCceeEEeeec---cCCeeeeec------cC---------------CCeEEEeeCCCe
Q psy12697        330 NKRGNYILSAGVDKTTIIWDAASGQCEQQFSFH---SAPALDVDW------QS---------------NTSFASCSTDQH  385 (602)
Q Consensus       330 ~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~---~~~~~~~~~------~~---------------~~~~~~~~~~~~  385 (602)
                      .|...+++....||.+++||...++....+...   .+...+..|      +|               ...++.|...|.
T Consensus         2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~   81 (541)
T KOG4547|consen    2 PPALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGS   81 (541)
T ss_pred             CchhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCcc
Confidence            345678999999999999999998877766432   222233333      11               134788889999


Q ss_pred             EEEEEcCCCceeeEec--cCCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeeeEeeccccccEEEEEECCCCCCCCC
Q psy12697        386 IHVCKLHSDKPVKSFE--GHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHDLQAHNKEIYTIKWSPTGPETSN  463 (602)
Q Consensus       386 i~i~d~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~  463 (602)
                      |.+|++..++....+.  .|.+.|.++.++.+-..|.+++.|+.+..|+......+...+....                
T Consensus        82 v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~----------------  145 (541)
T KOG4547|consen   82 VLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKP----------------  145 (541)
T ss_pred             EEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCC----------------
Confidence            9999999999877775  6889999999999999999999999999999998877776665443                


Q ss_pred             CCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeeecccCCCeeEeeecCC-----c--eE
Q psy12697        464 PNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSN-----T--SF  536 (602)
Q Consensus       464 ~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~-----~--~l  536 (602)
                                        .+.+++.+|||+.+++++  +.|++||+++++.+..|.+|.++|.++.|..+     |  .|
T Consensus       146 ------------------~~~sl~is~D~~~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vL  205 (541)
T KOG4547|consen  146 ------------------LVSSLCISPDGKILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVL  205 (541)
T ss_pred             ------------------ccceEEEcCCCCEEEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceee
Confidence                              445666677888899886  67999999999999999999999999999776     5  44


Q ss_pred             EEeeCCCcEEEeecCC
Q psy12697        537 ASCSTDQHIHVCKLHS  552 (602)
Q Consensus       537 ~~~~~d~~i~iw~~~~  552 (602)
                      .+...+..+.+|-++.
T Consensus       206 ssa~~~r~i~~w~v~~  221 (541)
T KOG4547|consen  206 SSAAAERGITVWVVEK  221 (541)
T ss_pred             eccccccceeEEEEEc
Confidence            5556677788888765

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.44  E-value=6e-11  Score=117.11  Aligned_cols=218  Identities=16%  Similarity=0.167  Sum_probs=137.3

Q ss_pred             eeCCCcceEEEEEcCCCCEEEEeeC-CC--cEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEeeCCCCCe
Q psy12697        218 LIGHESEVFICAWNPVKDFLASGSG-DS--TARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSF  294 (602)
Q Consensus       218 l~~h~~~v~~~~~~~~~~~l~s~~~-dg--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  294 (602)
                      +..+...+....|+|||+.|+..+. ++  .|.+||+.+++......                 ........+|+|||+.
T Consensus       213 l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~-----------------~~g~~~~~~wSPDG~~  275 (448)
T PRK04792        213 LLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTS-----------------FPGINGAPRFSPDGKK  275 (448)
T ss_pred             eecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecC-----------------CCCCcCCeeECCCCCE
Confidence            4446677888999999998887654 33  58888887654211000                 0123346899999998


Q ss_pred             EEE-EeCCCe--EEEEcCCCcceeecccccCCeEEEEEccCCCEEEEEec-CC--cEEEEeCCCCceeEEeeeccCCeee
Q psy12697        295 LAT-GSYDGY--ARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGV-DK--TTIIWDAASGQCEQQFSFHSAPALD  368 (602)
Q Consensus       295 l~~-~~~dg~--i~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg--~i~~wd~~~~~~~~~~~~~~~~~~~  368 (602)
                      |+. ...+|.  |.++|+.+.....+..+........|+|||+.|+..+. ++  .|.++|+.+++... +.........
T Consensus       276 La~~~~~~g~~~Iy~~dl~tg~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~-Lt~~g~~~~~  354 (448)
T PRK04792        276 LALVLSKDGQPEIYVVDIATKALTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSR-LTFEGEQNLG  354 (448)
T ss_pred             EEEEEeCCCCeEEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-EecCCCCCcC
Confidence            875 455564  77778877666666666666778999999998876553 33  46667887776543 2222223345


Q ss_pred             eeccCCCe-EEEeeC-CC--eEEEEEcCCCceeeEeccCCCCeEEEEECCCCCEEEEEECC-C--eEEEEeCCCCeeeEe
Q psy12697        369 VDWQSNTS-FASCST-DQ--HIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDD-M--TLKIWSLDKDNCVHD  441 (602)
Q Consensus       369 ~~~~~~~~-~~~~~~-~~--~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-g--~i~iwd~~~~~~~~~  441 (602)
                      ..|+|++. ++..+. ++  .|.++|+.+++... +... .......|+|+|+.|+..+.+ |  .+.+++. ++.....
T Consensus       355 ~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~-lt~~-~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~-~G~~~~~  431 (448)
T PRK04792        355 GSITPDGRSMIMVNRTNGKFNIARQDLETGAMQV-LTST-RLDESPSVAPNGTMVIYSTTYQGKQVLAAVSI-DGRFKAR  431 (448)
T ss_pred             eeECCCCCEEEEEEecCCceEEEEEECCCCCeEE-ccCC-CCCCCceECCCCCEEEEEEecCCceEEEEEEC-CCCceEE
Confidence            68888865 333333 33  46667887776432 2222 112245799999988776654 3  3677776 4555555


Q ss_pred             eccccccEEEEEECC
Q psy12697        442 LQAHNKEIYTIKWSP  456 (602)
Q Consensus       442 ~~~~~~~i~~~~~~~  456 (602)
                      +..+.+.+...+|+|
T Consensus       432 l~~~~g~~~~p~Wsp  446 (448)
T PRK04792        432 LPAGQGEVKSPAWSP  446 (448)
T ss_pred             CcCCCCCcCCCccCC
Confidence            555555556666665

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=99.42  E-value=5.8e-09  Score=95.43  Aligned_cols=104  Identities=17%  Similarity=0.159  Sum_probs=80.6

Q ss_pred             CccCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeeecccCCCeeEeeecCCc-eEEEeeCCC----cEEEeecCC
Q psy12697        478 QHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNT-SFASCSTDQ----HIHVCKLHS  552 (602)
Q Consensus       478 ~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~-~l~~~~~d~----~i~iw~~~~  552 (602)
                      ..-+.|.++..+|+|++++.+-....|.+.|+++|.....-+...+-|+.+.|+|++ ++|.+--+|    .|+++|+.+
T Consensus       399 ~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~  478 (668)
T COG4946         399 KDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDG  478 (668)
T ss_pred             CCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCC
Confidence            345678888999999999999999999999999998776666667789999999999 888776665    689999877


Q ss_pred             CCceeeeecccccceEEEEecCCcEEEEEECCCCCeEEEec
Q psy12697        553 DKPVKSFEGHTTGQLVHSYKGTGGIFEVCWNSRGDKVGASA  593 (602)
Q Consensus       553 ~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~  593 (602)
                      ++....-.            ..+.-.+-+|.|||++|..-+
T Consensus       479 ~Kiy~vTT------------~ta~DfsPaFD~d~ryLYfLs  507 (668)
T COG4946         479 GKIYDVTT------------PTAYDFSPAFDPDGRYLYFLS  507 (668)
T ss_pred             CeEEEecC------------CcccccCcccCCCCcEEEEEe
Confidence            65432211            123345678999999987654

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.42  E-value=1.4e-10  Score=113.49  Aligned_cols=237  Identities=16%  Similarity=0.162  Sum_probs=143.5

Q ss_pred             CeEEEEcCCCcceeecccccCCeEEEEEccCCCEEE---EEecCC--cEEEEeCCCCceeEEeeeccCCeeeeeccCCCe
Q psy12697        302 GYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYIL---SAGVDK--TTIIWDAASGQCEQQFSFHSAPALDVDWQSNTS  376 (602)
Q Consensus       302 g~i~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~---~~~~dg--~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~  376 (602)
                      ..|.+.|.+|.....+.........-.|+|||+.++   +...+|  .|.+.++.+++..+.. ..........|+|++.
T Consensus       165 ~~l~~~d~dG~~~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt-~~~g~~~~p~wSPDG~  243 (428)
T PRK01029        165 GELWSVDYDGQNLRPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKIL-ALQGNQLMPTFSPRKK  243 (428)
T ss_pred             ceEEEEcCCCCCceEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEee-cCCCCccceEECCCCC
Confidence            457777777766666666666778889999997532   343343  5777788877654332 2344455678999975


Q ss_pred             -EEEeeC-CC----eEEEEEcCCC---ceeeEeccCCCCeEEEEECCCCCEEEEEE-CCCeEEEEe--CCC-CeeeEeec
Q psy12697        377 -FASCST-DQ----HIHVCKLHSD---KPVKSFEGHTNEVNAIKWDPQGLLLASCS-DDMTLKIWS--LDK-DNCVHDLQ  443 (602)
Q Consensus       377 -~~~~~~-~~----~i~i~d~~~~---~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~iwd--~~~-~~~~~~~~  443 (602)
                       ++..+. +|    .+..|++..+   ++......+.......+|+|||+.|+..+ .+|...+|.  +.. +.....+.
T Consensus       244 ~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt  323 (428)
T PRK01029        244 LLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLT  323 (428)
T ss_pred             EEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEec
Confidence             444332 22    3444676642   33333333333456789999999888766 456555554  321 11111111


Q ss_pred             cccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCC---CeEEEEeCCCCceeeeecc
Q psy12697        444 AHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVD---KTTIIWDAASGQCEQQFSF  520 (602)
Q Consensus       444 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~  520 (602)
                                                        .+...+....|||||++|+..+.+   ..|.+||+.+++...... 
T Consensus       324 ----------------------------------~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~-  368 (428)
T PRK01029        324 ----------------------------------KKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTT-  368 (428)
T ss_pred             ----------------------------------cCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccC-
Confidence                                              122344567888899988876543   469999999887654333 


Q ss_pred             cCCCeeEeeecCCc-eEEEeeC---CCcEEEeecCCCCceeeeecccccceEEEEecCCcEEEEEECCCC
Q psy12697        521 HSAPALDVDWQSNT-SFASCST---DQHIHVCKLHSDKPVKSFEGHTTGQLVHSYKGTGGIFEVCWNSRG  586 (602)
Q Consensus       521 ~~~~v~~~~~s~~~-~l~~~~~---d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg  586 (602)
                      ....+....|+||| .|+....   ...|++|++.+++......            ..+.+...+|+|-.
T Consensus       369 ~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt~------------~~g~~~~p~Ws~~~  426 (428)
T PRK01029        369 SPENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRKIVI------------GSGEKRFPSWGAFP  426 (428)
T ss_pred             CCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeec------------CCCcccCceecCCC
Confidence            33456789999999 6654332   3568888887655332221            23456778888854

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=99.40  E-value=2.2e-09  Score=98.12  Aligned_cols=291  Identities=17%  Similarity=0.152  Sum_probs=181.8

Q ss_pred             CCCEEEEeeCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEeeCCCCCeEEEEeCCC-eEEEEcCCC
Q psy12697        233 VKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFLATGSYDG-YARIWTSDG  311 (602)
Q Consensus       233 ~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg-~i~i~~~~~  311 (602)
                      +|++++..|. |...+.+...+...                  ..++...|.-..+..+++-++.|..|| .+-++|.++
T Consensus       331 ~Gd~ia~VSR-GkaFi~~~~~~~~i------------------qv~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~  391 (668)
T COG4946         331 NGDYIALVSR-GKAFIMRPWDGYSI------------------QVGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDG  391 (668)
T ss_pred             CCcEEEEEec-CcEEEECCCCCeeE------------------EcCCCCceEEEEEccCCcceEEeccCCceEEEEecCC
Confidence            5778888776 55666555443221                  123456688888888888999999999 899999999


Q ss_pred             cceeecccccCCeEEEEEccCCCEEEEEecCCcEEEEeCCCCceeEEeeeccCCeeeeeccCCCeEEEee-C----CCeE
Q psy12697        312 SLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTSFASCS-T----DQHI  386 (602)
Q Consensus       312 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~----~~~i  386 (602)
                      ...+.+...-+.|.++..+++|++++.+.....+.+.|+.++.....-+....-++.+.|+|+..+++-+ -    ...|
T Consensus       392 ~e~kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~I  471 (668)
T COG4946         392 GEVKRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSI  471 (668)
T ss_pred             ceEEEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeE
Confidence            9999999899999999999999999999989999999999998877666777889999999998865433 3    3478


Q ss_pred             EEEEcCCCceeeEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeeeEee--ccccccEEEEE----ECCCCCC
Q psy12697        387 HVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHDL--QAHNKEIYTIK----WSPTGPE  460 (602)
Q Consensus       387 ~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~--~~~~~~i~~~~----~~~~~~~  460 (602)
                      +++|+.+++....-. ....-.+-+|+|++++|.--+..    -.|..+.+.+..+  +.+..+-..+-    .+|-...
T Consensus       472 klydm~~~Kiy~vTT-~ta~DfsPaFD~d~ryLYfLs~R----sLdPs~Drv~fnf~f~~vskPylv~L~~g~~sP~~q~  546 (668)
T COG4946         472 KLYDMDGGKIYDVTT-PTAYDFSPAFDPDGRYLYFLSAR----SLDPSNDRVIFNFSFQRVSKPYLVVLGRGYYSPFNQP  546 (668)
T ss_pred             EEEecCCCeEEEecC-CcccccCcccCCCCcEEEEEecc----ccCCCCCeeEEEEEEeeeccceEEEecCCCCChhhcC
Confidence            999999887543322 22333456799999998776542    1122222221111  11111111000    1111100


Q ss_pred             --CCCCCcce-----eeeeeeccCCccCCeEEEEEccCCCE--------------EEEEeCCCeEEEEeCCCCceeeeec
Q psy12697        461 --TSNPNMSL-----IFILKSTLGQHKGPIFALKWNKRGNY--------------ILSAGVDKTTIIWDAASGQCEQQFS  519 (602)
Q Consensus       461 --~~~~~~~~-----~~~~~~~~~~~~~~v~~i~~s~~~~~--------------l~s~~~dg~i~iwd~~~~~~~~~~~  519 (602)
                        -+......     +.....++.-.++.-.+++=-.+|+.              +-.+-.-|.+.+||+++.+...   
T Consensus       547 p~~~~~ea~e~dle~ie~r~eP~pVee~dY~sI~~lk~~killfs~pi~Gefs~yy~gq~~kG~l~~ydletkk~~e---  623 (668)
T COG4946         547 PDEANSEAGEVDLEGIEDRVEPFPVEEGDYRSIAGLKNGKILLFSYPIHGEFSQYYWGQPEKGRLEKYDLETKKVEE---  623 (668)
T ss_pred             chhcCccccceehhhhcccccccccCccceeEeeecCCCeEEEEEeeccchhhhhhcCCCccceEEEEecchhhHHH---
Confidence              00000000     00011111111122222222222221              1123345778888887655322   


Q ss_pred             ccCCCeeEeeecCCc-eEEEeeCCCcEEEeecCC
Q psy12697        520 FHSAPALDVDWQSNT-SFASCSTDQHIHVCKLHS  552 (602)
Q Consensus       520 ~~~~~v~~~~~s~~~-~l~~~~~d~~i~iw~~~~  552 (602)
                       -...+.++..|+|+ .++. -.||.+++++++.
T Consensus       624 -~k~nvss~rlS~D~s~ilv-k~d~kl~~f~vek  655 (668)
T COG4946         624 -YKDNVSSFRLSSDGSKILV-KLDGKLRLFDVEK  655 (668)
T ss_pred             -HhcccceEEEcCCCCEEEE-EeCCeEEEEeccc
Confidence             23568899999999 6666 8899999999865

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.40  E-value=2.4e-09  Score=99.34  Aligned_cols=271  Identities=10%  Similarity=0.085  Sum_probs=164.8

Q ss_pred             CcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEeeCCCCCeEEEEeC----------CCeEEEEcCC-Cc
Q psy12697        244 STARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFLATGSY----------DGYARIWTSD-GS  312 (602)
Q Consensus       244 g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~----------dg~i~i~~~~-~~  312 (602)
                      +.|.+.|..+.+.......                 ...-..+ ++||++.++++..          +..|.+||.. .+
T Consensus        27 ~~v~ViD~~~~~v~g~i~~-----------------G~~P~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~   88 (352)
T TIGR02658        27 TQVYTIDGEAGRVLGMTDG-----------------GFLPNPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHL   88 (352)
T ss_pred             ceEEEEECCCCEEEEEEEc-----------------cCCCcee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCc
Confidence            7899999887654321111                 1122234 9999998887766          6899999976 44


Q ss_pred             ceeecccc-------cCCeEEEEEccCCCEEEEEe-c-CCcEEEEeCCCCceeEEeeeccCCeeeeeccCCCeEEEeeCC
Q psy12697        313 LKSTLGQH-------KGPIFALKWNKRGNYILSAG-V-DKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTSFASCSTD  383 (602)
Q Consensus       313 ~~~~~~~~-------~~~i~~~~~~~~~~~l~~~~-~-dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  383 (602)
                      ....+...       ......++++|||++|+... . +..|.+.|+.+++.+..+...... .-...+ +..+.+-+.|
T Consensus        89 ~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~-~vy~t~-e~~~~~~~~D  166 (352)
T TIGR02658        89 PIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCY-HIFPTA-NDTFFMHCRD  166 (352)
T ss_pred             EEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCc-EEEEec-CCccEEEeec
Confidence            44444321       12234788999999999776 3 689999999999999988764321 222222 2223333345


Q ss_pred             CeEEEEEcCC-Ccee-eE---eccCCCCeE-EEEECC-CCCEEEEEECCCeEEEEeCCCCeeeEe--eccccccEEEEEE
Q psy12697        384 QHIHVCKLHS-DKPV-KS---FEGHTNEVN-AIKWDP-QGLLLASCSDDMTLKIWSLDKDNCVHD--LQAHNKEIYTIKW  454 (602)
Q Consensus       384 ~~i~i~d~~~-~~~~-~~---~~~~~~~i~-~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~--~~~~~~~i~~~~~  454 (602)
                      |......+.. ++.. ..   +.+....+. .-.|.+ +|+++.+..+ |.|.+.|+........  +.........-.|
T Consensus       167 g~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~w  245 (352)
T TIGR02658       167 GSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGW  245 (352)
T ss_pred             CceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeecccccccccc
Confidence            4444433322 2211 11   111000000 003455 8888877776 9999999755332111  0000000000012


Q ss_pred             CCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEe----------CCCeEEEEeCCCCceeeeecccCCC
Q psy12697        455 SPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAG----------VDKTTIIWDAASGQCEQQFSFHSAP  524 (602)
Q Consensus       455 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~----------~dg~i~iwd~~~~~~~~~~~~~~~~  524 (602)
                      .                        .+.+.-++++|+++.+....          ..+.|.++|..+++.+..+.. ...
T Consensus       246 r------------------------P~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~v-G~~  300 (352)
T TIGR02658       246 R------------------------PGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIEL-GHE  300 (352)
T ss_pred             C------------------------CCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeC-CCc
Confidence            2                        23334489999998888743          125799999999999988874 457


Q ss_pred             eeEeeecCCc--eEEEe-eCCCcEEEeecCCCCceeeee
Q psy12697        525 ALDVDWQSNT--SFASC-STDQHIHVCKLHSDKPVKSFE  560 (602)
Q Consensus       525 v~~~~~s~~~--~l~~~-~~d~~i~iw~~~~~~~~~~~~  560 (602)
                      +..++++||+  .|++. ..++.|.+.|..+++.+.++.
T Consensus       301 ~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i~  339 (352)
T TIGR02658       301 IDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSVN  339 (352)
T ss_pred             eeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeeec
Confidence            8999999999  44433 468889999999988887764

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.37  E-value=5.5e-10  Score=109.35  Aligned_cols=217  Identities=10%  Similarity=0.106  Sum_probs=135.2

Q ss_pred             CceeEEeeCCCCCeEE---EEeCCC--eEEEEcCCCcceeecccccCCeEEEEEccCCCEEEEEec-CC----cEEEEeC
Q psy12697        281 KDVTSLDWNNNGSFLA---TGSYDG--YARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGV-DK----TTIIWDA  350 (602)
Q Consensus       281 ~~i~~~~~~~~~~~l~---~~~~dg--~i~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg----~i~~wd~  350 (602)
                      ....+-.|+|||+.++   +...+|  .|.+.++.+.....+....+......|+|||+.|+..+. +|    .+..|++
T Consensus       185 ~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~  264 (428)
T PRK01029        185 SLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSL  264 (428)
T ss_pred             CCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecCCCCccceEECCCCCEEEEEECCCCCcceeEEEeec
Confidence            3456779999997532   444443  577778876665565555666677899999999886553 22    3444776


Q ss_pred             CCC---ceeEEeeeccCCeeeeeccCCCe-EEEee-CCCe--EEEEEcCC-CceeeEeccCCCCeEEEEECCCCCEEEEE
Q psy12697        351 ASG---QCEQQFSFHSAPALDVDWQSNTS-FASCS-TDQH--IHVCKLHS-DKPVKSFEGHTNEVNAIKWDPQGLLLASC  422 (602)
Q Consensus       351 ~~~---~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~--i~i~d~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~  422 (602)
                      ..+   +..+.............|+|++. ++..+ .+|.  |+++++.. +.....+..+...+....|+|||+.|+..
T Consensus       265 ~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~  344 (428)
T PRK01029        265 ETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFC  344 (428)
T ss_pred             ccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECCCCCEEEEE
Confidence            653   22222222223345679999976 55444 4554  44555542 23344455455567789999999999877


Q ss_pred             ECC---CeEEEEeCCCCeeeEeeccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEe
Q psy12697        423 SDD---MTLKIWSLDKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAG  499 (602)
Q Consensus       423 ~~d---g~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~  499 (602)
                      +.+   ..|.+||+.+++... +...                                  ...+....|+|||++|+...
T Consensus       345 ~~~~g~~~I~v~dl~~g~~~~-Lt~~----------------------------------~~~~~~p~wSpDG~~L~f~~  389 (428)
T PRK01029        345 SVIKGVRQICVYDLATGRDYQ-LTTS----------------------------------PENKESPSWAIDSLHLVYSA  389 (428)
T ss_pred             EcCCCCcEEEEEECCCCCeEE-ccCC----------------------------------CCCccceEECCCCCEEEEEE
Confidence            653   368999988765432 2111                                  11234467788888877543


Q ss_pred             C---CCeEEEEeCCCCceeeeecccCCCeeEeeecCC
Q psy12697        500 V---DKTTIIWDAASGQCEQQFSFHSAPALDVDWQSN  533 (602)
Q Consensus       500 ~---dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~  533 (602)
                      .   ...|++||+.+++...... ..+.+...+|+|-
T Consensus       390 ~~~g~~~L~~vdl~~g~~~~Lt~-~~g~~~~p~Ws~~  425 (428)
T PRK01029        390 GNSNESELYLISLITKKTRKIVI-GSGEKRFPSWGAF  425 (428)
T ss_pred             CCCCCceEEEEECCCCCEEEeec-CCCcccCceecCC
Confidence            3   3578999998777554443 4455677888874

>KOG0280|consensus

Probab=99.37  E-value=1.9e-10  Score=98.42  Aligned_cols=261  Identities=15%  Similarity=0.186  Sum_probs=166.6

Q ss_pred             CCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEeeCC---CCC-eEEEEeCCCeEEEEcCCCcce-eec
Q psy12697        243 DSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNN---NGS-FLATGSYDGYARIWTSDGSLK-STL  317 (602)
Q Consensus       243 dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~~-~l~~~~~dg~i~i~~~~~~~~-~~~  317 (602)
                      .|.+.++++...+......++. .            ....+..+.|.-   +|. .++-+...|.|.++....... ..+
T Consensus        45 ~Gkl~Lys~~d~~~~~l~~~q~-~------------dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L  111 (339)
T KOG0280|consen   45 SGKLHLYSLEDMKLSPLDTLQC-T------------DTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHL  111 (339)
T ss_pred             ccceEEEeecccccCccceeee-e------------cccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeee
Confidence            3567777777665543111111 0            123455555543   444 456667788999987553211 111


Q ss_pred             cc---cc---CCeEEEEEccCCCEEEEEecCCcEEEEeCCCCceeE--EeeeccCCeeeeeccCC--CeEEEeeCCCeEE
Q psy12697        318 GQ---HK---GPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQ--QFSFHSAPALDVDWQSN--TSFASCSTDQHIH  387 (602)
Q Consensus       318 ~~---~~---~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~--~~~~~~~~~~~~~~~~~--~~~~~~~~~~~i~  387 (602)
                      .+   -.   ....++.|++.+..++++..+|.+.+-+........  .++.|........|+..  +.+.+|+.|+.+.
T Consensus       112 ~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~  191 (339)
T KOG0280|consen  112 RGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLS  191 (339)
T ss_pred             cccchhhhhheeeeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEE
Confidence            11   11   124577899999999999999999976666554444  77888888888887654  6789999999999


Q ss_pred             EEEcCC-CceeeE-eccCCCCeEEEEECC-CCCEEEEEECCCeEEEEeCCC-CeeeEeeccccccEEEEEECCCCCCCCC
Q psy12697        388 VCKLHS-DKPVKS-FEGHTNEVNAIKWDP-QGLLLASCSDDMTLKIWSLDK-DNCVHDLQAHNKEIYTIKWSPTGPETSN  463 (602)
Q Consensus       388 i~d~~~-~~~~~~-~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~~  463 (602)
                      .||++. ++.+.. .+-|...|.+|.-+| .+.++++|+.|-.|++||.++ ++++..-. -.+.|..+.++|.-     
T Consensus       192 ~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~-v~GGVWRi~~~p~~-----  265 (339)
T KOG0280|consen  192 CWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAK-VGGGVWRIKHHPEI-----  265 (339)
T ss_pred             EEEecCCcceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCc-cccceEEEEecchh-----
Confidence            999993 333333 456888899998887 678999999999999999985 34443322 22445555544421     


Q ss_pred             CCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCc-----eeeeecccCCCeeEeeecCC-ceEE
Q psy12697        464 PNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQ-----CEQQFSFHSAPALDVDWQSN-TSFA  537 (602)
Q Consensus       464 ~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~~~~~-----~~~~~~~~~~~v~~~~~s~~-~~l~  537 (602)
                                                 .++.|+++-.+| .+|-+...+.     .....+.|.+-+..-.|... +.++
T Consensus       266 ---------------------------~~~lL~~CMh~G-~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lA  317 (339)
T KOG0280|consen  266 ---------------------------FHRLLAACMHNG-AKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLA  317 (339)
T ss_pred             ---------------------------hhHHHHHHHhcC-ceEEEecccccchheeeeccccccceeeccccccccceee
Confidence                                       234455555555 6666665442     23455567777777778433 3788


Q ss_pred             Eee-CCCcEE-Eeec
Q psy12697        538 SCS-TDQHIH-VCKL  550 (602)
Q Consensus       538 ~~~-~d~~i~-iw~~  550 (602)
                      +|+ .|+.++ +|-.
T Consensus       318 TCsFYDk~~~~~Wl~  332 (339)
T KOG0280|consen  318 TCSFYDKKIRQLWLH  332 (339)
T ss_pred             eeeccccceeeeeee
Confidence            876 466644 6753

>KOG1064|consensus

Probab=99.35  E-value=9.7e-12  Score=130.30  Aligned_cols=228  Identities=16%  Similarity=0.279  Sum_probs=171.2

Q ss_pred             eEeeCCCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEeeCCCCCeE
Q psy12697        216 TKLIGHESEVFICAWNPVKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFL  295 (602)
Q Consensus       216 ~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l  295 (602)
                      ..+..+-..|.++.=+|...+-++|+.||.+++|....+.......          .     .....++.+.|+.+|+.+
T Consensus      2202 ~~~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~r----------t-----~g~s~vtr~~f~~qGnk~ 2266 (2439)
T KOG1064|consen 2202 VMIKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFR----------T-----AGNSRVTRSRFNHQGNKF 2266 (2439)
T ss_pred             eEeecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEee----------c-----cCcchhhhhhhcccCCce
Confidence            3445566778888889999999999999999999998776532111          1     113679999999999999


Q ss_pred             EEEeCCCeEEEEcCCCcceeecccccCCeEEEEEccCCCEEEEEe---cCCcEEEEeCCCCceeEEeeeccCCeeeeecc
Q psy12697        296 ATGSYDGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAG---VDKTTIIWDAASGQCEQQFSFHSAPALDVDWQ  372 (602)
Q Consensus       296 ~~~~~dg~i~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~---~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~  372 (602)
                      ..+..||.+.+|....+.....+.|.....+..|-.  ..+++++   .++.+.+||.--...                 
T Consensus      2267 ~i~d~dg~l~l~q~~pk~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~----------------- 2327 (2439)
T KOG1064|consen 2267 GIVDGDGDLSLWQASPKPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPM----------------- 2327 (2439)
T ss_pred             eeeccCCceeecccCCcceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcc-----------------
Confidence            999999999999999888888889999998888875  4566654   356777777431100                 


Q ss_pred             CCCeEEEeeCCCeEEEEEcCCCceeeEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeeeEeeccccccEEEE
Q psy12697        373 SNTSFASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHDLQAHNKEIYTI  452 (602)
Q Consensus       373 ~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~  452 (602)
                                           ...+.  ..|.+.++++++-|..++|++|+.+|.|.+||++..+.+++++.-.      
T Consensus      2328 ---------------------~s~v~--~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~~~------ 2378 (2439)
T KOG1064|consen 2328 ---------------------NSLVH--TCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQALD------ 2378 (2439)
T ss_pred             ---------------------cceee--eecCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhhhhh------
Confidence                                 01122  6699999999999999999999999999999999888777765411      


Q ss_pred             EECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeeecc-c--CCC--e--
Q psy12697        453 KWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSF-H--SAP--A--  525 (602)
Q Consensus       453 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~--~~~--v--  525 (602)
                                                            ...++++|+..|.++||++.....+..+.. |  .+-  .  
T Consensus      2379 --------------------------------------~~~~f~~~ss~g~ikIw~~s~~~ll~~~p~e~ak~gfFr~~g 2420 (2439)
T KOG1064|consen 2379 --------------------------------------TREYFVTGSSEGNIKIWRLSEFGLLHTFPSEHAKQGFFRNIG 2420 (2439)
T ss_pred             --------------------------------------hhheeeccCcccceEEEEccccchhhcCchhhcccchhhhcC
Confidence                                                  235799999999999999998877766653 1  110  1  


Q ss_pred             eEeeecCCceEEEeeCCCc
Q psy12697        526 LDVDWQSNTSFASCSTDQH  544 (602)
Q Consensus       526 ~~~~~s~~~~l~~~~~d~~  544 (602)
                      ..+...+.++|.+|+.||+
T Consensus      2421 ~Q~~v~~~nrifsCgad~~ 2439 (2439)
T KOG1064|consen 2421 MQINVGQCNRIFSCGADGT 2439 (2439)
T ss_pred             ceeeeccCceEEEecCCCC
Confidence            2233334447888888763

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.31  E-value=2.5e-08  Score=88.73  Aligned_cols=271  Identities=14%  Similarity=0.257  Sum_probs=171.9

Q ss_pred             eCCCcceEEEEEcCCCCEEEEeeC---CCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEeeCCCCCeE
Q psy12697        219 IGHESEVFICAWNPVKDFLASGSG---DSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFL  295 (602)
Q Consensus       219 ~~h~~~v~~~~~~~~~~~l~s~~~---dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l  295 (602)
                      ..+...++-++|+|+++.|.++..   +|.|.-|.++.....    +. ...+..       ....+.+.++++++|+++
T Consensus        36 v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~----Lt-~ln~~~-------~~g~~p~yvsvd~~g~~v  103 (346)
T COG2706          36 VAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGR----LT-FLNRQT-------LPGSPPCYVSVDEDGRFV  103 (346)
T ss_pred             ccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCe----EE-Eeeccc-------cCCCCCeEEEECCCCCEE
Confidence            346677888999999999988765   477888887753111    11 111111       112344889999999999


Q ss_pred             EEEeCC-CeEEEEcCC--Cccee--ecccccCC----------eEEEEEccCCCEEEEEec-CCcEEEEeCCCCceeEEe
Q psy12697        296 ATGSYD-GYARIWTSD--GSLKS--TLGQHKGP----------IFALKWNKRGNYILSAGV-DKTTIIWDAASGQCEQQF  359 (602)
Q Consensus       296 ~~~~~d-g~i~i~~~~--~~~~~--~~~~~~~~----------i~~~~~~~~~~~l~~~~~-dg~i~~wd~~~~~~~~~~  359 (602)
                      +++... |.|.++.++  |.+..  ....|.+.          +....+.|++++|++.+. .-.|.+|++..++....-
T Consensus       104 f~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~  183 (346)
T COG2706         104 FVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPAD  183 (346)
T ss_pred             EEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCcccccc
Confidence            988764 789998864  32221  22234444          788899999999998753 236999999987654432


Q ss_pred             e---eccCCeeeeeccCCCeEE--EeeCCCeEEEEEcCCC-ceeeEecc---------CCCCeEEEEECCCCCEEEEEEC
Q psy12697        360 S---FHSAPALDVDWQSNTSFA--SCSTDQHIHVCKLHSD-KPVKSFEG---------HTNEVNAIKWDPQGLLLASCSD  424 (602)
Q Consensus       360 ~---~~~~~~~~~~~~~~~~~~--~~~~~~~i~i~d~~~~-~~~~~~~~---------~~~~i~~~~~~~~~~~l~~~~~  424 (602)
                      .   .......-+.|+|++.++  ++--+++|.+|..... ..+..++.         .......|.++|||++|.++..
T Consensus       184 ~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNR  263 (346)
T COG2706         184 PAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNR  263 (346)
T ss_pred             ccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecC
Confidence            2   234567789999998854  5556899999998873 22333321         2345778999999999988754


Q ss_pred             -CCeEEEEeCCCCeeeEeeccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCCC-
Q psy12697        425 -DMTLKIWSLDKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDK-  502 (602)
Q Consensus       425 -dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg-  502 (602)
                       ...|.+|.+....-.         ..-+.+.+                     .+...-..+.|++.|++|+++.+++ 
T Consensus       264 g~dsI~~f~V~~~~g~---------L~~~~~~~---------------------teg~~PR~F~i~~~g~~Liaa~q~sd  313 (346)
T COG2706         264 GHDSIAVFSVDPDGGK---------LELVGITP---------------------TEGQFPRDFNINPSGRFLIAANQKSD  313 (346)
T ss_pred             CCCeEEEEEEcCCCCE---------EEEEEEec---------------------cCCcCCccceeCCCCCEEEEEccCCC
Confidence             235777766532111         11111111                     1233356778889999999888754 


Q ss_pred             eEEEEeC--CCCceeeeec-ccCCCeeEeeec
Q psy12697        503 TTIIWDA--ASGQCEQQFS-FHSAPALDVDWQ  531 (602)
Q Consensus       503 ~i~iwd~--~~~~~~~~~~-~~~~~v~~~~~s  531 (602)
                      .|.+|..  ++|++-.... .......|+.|.
T Consensus       314 ~i~vf~~d~~TG~L~~~~~~~~~p~Pvcv~f~  345 (346)
T COG2706         314 NITVFERDKETGRLTLLGRYAVVPEPVCVKFL  345 (346)
T ss_pred             cEEEEEEcCCCceEEecccccCCCCcEEEEEc
Confidence            5777755  4566544333 233344555553

>KOG1064|consensus

Probab=99.29  E-value=3.4e-11  Score=126.40  Aligned_cols=254  Identities=15%  Similarity=0.246  Sum_probs=181.5

Q ss_pred             CeEEEEeCCCeEEEEcCCCcceeecccccCCeEEEEEccCCCEEEEEecCCcEEEEeCCCCceeEEeee-ccCCeeeeec
Q psy12697        293 SFLATGSYDGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSF-HSAPALDVDW  371 (602)
Q Consensus       293 ~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~-~~~~~~~~~~  371 (602)
                      +.+.....++...-|..++..+. +..+-..|.++.-+|...+.++|+.||.+++|....+..+..++. ....+..+.|
T Consensus      2181 ~~~~~~n~~~~~~tq~~~~~~~~-~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f 2259 (2439)
T KOG1064|consen 2181 NRFTPSNLPWLGSTQTSRGASVM-IKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRF 2259 (2439)
T ss_pred             ccCCcccCCccccceecccceeE-eecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhh
Confidence            34444444555555665544332 233556688888889999999999999999999998887776643 3366777777


Q ss_pred             cCC-CeEEEeeCCCeEEEEEcCCCceeeEeccCCCCeEEEEECCCCCEEEEEE---CCCeEEEEeCCCCeeeEeeccccc
Q psy12697        372 QSN-TSFASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCS---DDMTLKIWSLDKDNCVHDLQAHNK  447 (602)
Q Consensus       372 ~~~-~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~---~dg~i~iwd~~~~~~~~~~~~~~~  447 (602)
                      +.. +.+.++..||.+.+|... .++....+.|+...+.+.|-.  ..+++++   +++.+.+||.--.....       
T Consensus      2260 ~~qGnk~~i~d~dg~l~l~q~~-pk~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s------- 2329 (2439)
T KOG1064|consen 2260 NHQGNKFGIVDGDGDLSLWQAS-PKPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNS------- 2329 (2439)
T ss_pred             cccCCceeeeccCCceeecccC-CcceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccc-------
Confidence            654 779999999999999987 677888889999888888875  5667664   46889999964211100       


Q ss_pred             cEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeeecccCCCeeE
Q psy12697        448 EIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALD  527 (602)
Q Consensus       448 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~  527 (602)
                      -|                          -..|.+.++++++-|..+.|++||.+|.|++||++..++++.++.       
T Consensus      2330 ~v--------------------------~~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~------- 2376 (2439)
T KOG1064|consen 2330 LV--------------------------HTCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQA------- 2376 (2439)
T ss_pred             ee--------------------------eeecCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhhh-------
Confidence            00                          023777788888888889999999999999999998888877764       


Q ss_pred             eeecCCceEEEeeCCCcEEEeecCCCCceeeeecccccceEEEEecCCcEEEEEECCCCCeEEEeccCCe
Q psy12697        528 VDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEGHTTGQLVHSYKGTGGIFEVCWNSRGDKVGASASDGS  597 (602)
Q Consensus       528 ~~~s~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~  597 (602)
                        +....++++++..|.++||++..-..+++++.....+-.  |...+  ..+...+ ...|.+|+.||+
T Consensus      2377 --~~~~~~f~~~ss~g~ikIw~~s~~~ll~~~p~e~ak~gf--Fr~~g--~Q~~v~~-~nrifsCgad~~ 2439 (2439)
T KOG1064|consen 2377 --LDTREYFVTGSSEGNIKIWRLSEFGLLHTFPSEHAKQGF--FRNIG--MQINVGQ-CNRIFSCGADGT 2439 (2439)
T ss_pred             --hhhhheeeccCcccceEEEEccccchhhcCchhhcccch--hhhcC--ceeeecc-CceEEEecCCCC
Confidence              442339999999999999999988877777653321111  22222  3333333 456778888874

>KOG4547|consensus

Probab=99.28  E-value=6.3e-10  Score=104.66  Aligned_cols=144  Identities=17%  Similarity=0.299  Sum_probs=119.8

Q ss_pred             CCCCeEEEEeCCCeEEEEcCCC-cceeec--ccccCCeEEEEEccCCCEEEEEecCCcEEEEeCCCCceeEEeeeccCCe
Q psy12697        290 NNGSFLATGSYDGYARIWTSDG-SLKSTL--GQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPA  366 (602)
Q Consensus       290 ~~~~~l~~~~~dg~i~i~~~~~-~~~~~~--~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~  366 (602)
                      .+...++-|...|.|.+|+..+ +....+  ..|.+.|.++.++.+-..|.+++.|+.+..|+.......+.+......+
T Consensus        68 ~~t~~lvlgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~  147 (541)
T KOG4547|consen   68 LDTSMLVLGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLV  147 (541)
T ss_pred             CCceEEEeecCCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCcc
Confidence            3556788899999999999764 444444  4799999999999999999999999999999999999999999999999


Q ss_pred             eeeeccCCCe-EEEeeCCCeEEEEEcCCCceeeEeccCCCCeEEEEECCC-----CCEEEEE-ECCCeEEEEeCCC
Q psy12697        367 LDVDWQSNTS-FASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQ-----GLLLASC-SDDMTLKIWSLDK  435 (602)
Q Consensus       367 ~~~~~~~~~~-~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~-----~~~l~~~-~~dg~i~iwd~~~  435 (602)
                      .+++.+|++. ++++  .+.|.+||+++++.+..|.+|.++|++++|--+     |.++.++ ..+.-+.+|-+..
T Consensus       148 ~sl~is~D~~~l~~a--s~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~  221 (541)
T KOG4547|consen  148 SSLCISPDGKILLTA--SRQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK  221 (541)
T ss_pred             ceEEEcCCCCEEEec--cceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence            9999999955 4443  579999999999999999999999999999876     6666554 3445577776543

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.27  E-value=3e-08  Score=88.27  Aligned_cols=258  Identities=13%  Similarity=0.101  Sum_probs=163.0

Q ss_pred             CCeEEEEcCCC---c-ceeecccccCCeEEEEEccCCCEEEEEecC---CcEEEEeCCC--Ccee--EEeeeccCCeeee
Q psy12697        301 DGYARIWTSDG---S-LKSTLGQHKGPIFALKWNKRGNYILSAGVD---KTTIIWDAAS--GQCE--QQFSFHSAPALDV  369 (602)
Q Consensus       301 dg~i~i~~~~~---~-~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---g~i~~wd~~~--~~~~--~~~~~~~~~~~~~  369 (602)
                      +.-|++|+++.   + ....+....+.++-++|+|+.++|.++..+   |.|.-|.+..  |+..  ........+.+.+
T Consensus        15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yv   94 (346)
T COG2706          15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYV   94 (346)
T ss_pred             CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEE
Confidence            45689998762   1 222334567788999999999999987654   6677766653  5432  2333344455778


Q ss_pred             eccCCCeEEEe--eCCCeEEEEEcCC-Cce--eeEeccCCCC----------eEEEEECCCCCEEEEEEC-CCeEEEEeC
Q psy12697        370 DWQSNTSFASC--STDQHIHVCKLHS-DKP--VKSFEGHTNE----------VNAIKWDPQGLLLASCSD-DMTLKIWSL  433 (602)
Q Consensus       370 ~~~~~~~~~~~--~~~~~i~i~d~~~-~~~--~~~~~~~~~~----------i~~~~~~~~~~~l~~~~~-dg~i~iwd~  433 (602)
                      +.++++.++.+  ...|.|.++-++. +.+  ......|.+.          +....+.|++++|++.+- -.+|.+|++
T Consensus        95 svd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~  174 (346)
T COG2706          95 SVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDL  174 (346)
T ss_pred             EECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEc
Confidence            88888764433  3568899999865 322  2222334444          888999999999998864 246999999


Q ss_pred             CCCeeeEeeccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEe-CCCeEEEEeCCCC
Q psy12697        434 DKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAG-VDKTTIIWDAASG  512 (602)
Q Consensus       434 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~-~dg~i~iwd~~~~  512 (602)
                      ..+.....-...        +                       .....-..|.|+|++++..... .+++|.+|.....
T Consensus       175 ~dg~L~~~~~~~--------v-----------------------~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~  223 (346)
T COG2706         175 DDGKLTPADPAE--------V-----------------------KPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPA  223 (346)
T ss_pred             ccCccccccccc--------c-----------------------CCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCC
Confidence            866543221110        0                       1234556788889999877655 4899999998763


Q ss_pred             -ceeeeecc---------cCCCeeEeeecCCc-eEEEee-CCCcEEEeecCCCCceeeeecccccceEEEEecCC-cEEE
Q psy12697        513 -QCEQQFSF---------HSAPALDVDWQSNT-SFASCS-TDQHIHVCKLHSDKPVKSFEGHTTGQLVHSYKGTG-GIFE  579 (602)
Q Consensus       513 -~~~~~~~~---------~~~~v~~~~~s~~~-~l~~~~-~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~  579 (602)
                       ..+..++.         -......+..+||| +|.++. ....|.+|.+....-...+.+        .....+ ..+.
T Consensus       224 ~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~--------~~~teg~~PR~  295 (346)
T COG2706         224 VGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVG--------ITPTEGQFPRD  295 (346)
T ss_pred             CceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEE--------EeccCCcCCcc
Confidence             22222221         22356788899999 443332 345788888754321111111        111122 2678


Q ss_pred             EEECCCCCeEEEeccCCe
Q psy12697        580 VCWNSRGDKVGASASDGS  597 (602)
Q Consensus       580 l~~spdg~~l~~~~~dg~  597 (602)
                      +.|+|+|++|+++..++.
T Consensus       296 F~i~~~g~~Liaa~q~sd  313 (346)
T COG2706         296 FNINPSGRFLIAANQKSD  313 (346)
T ss_pred             ceeCCCCCEEEEEccCCC
Confidence            999999999999998763

>KOG0280|consensus

Probab=99.23  E-value=1.1e-09  Score=93.92  Aligned_cols=176  Identities=16%  Similarity=0.220  Sum_probs=121.3

Q ss_pred             eEEEeeCCCeEEEEEcCCCceeeEeccCCC------CeEEEEECCCCCEEEEEECCCeEEEEeCCCCee--eEeeccccc
Q psy12697        376 SFASCSTDQHIHVCKLHSDKPVKSFEGHTN------EVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNC--VHDLQAHNK  447 (602)
Q Consensus       376 ~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~------~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~--~~~~~~~~~  447 (602)
                      .++.+...|.|.++..........+.+-..      ...++.|++.+..++++..+|.+.+-+......  ++..+.|.-
T Consensus        87 ~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~  166 (339)
T KOG0280|consen   87 NLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEF  166 (339)
T ss_pred             eeeeccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccce
Confidence            356666788888887765544444433221      245778999999999999999998665544433  335566665


Q ss_pred             cEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCCCeEEEEeCC-CCceeee-ecccCCCe
Q psy12697        448 EIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAA-SGQCEQQ-FSFHSAPA  525 (602)
Q Consensus       448 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~~-~~~~~~~-~~~~~~~v  525 (602)
                      +.....|+..                                 +.+++.+|+.|+.+..||++ .++.+.. .+.|...|
T Consensus       167 E~Wta~f~~~---------------------------------~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV  213 (339)
T KOG0280|consen  167 EAWTAKFSDK---------------------------------EPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGV  213 (339)
T ss_pred             eeeeeecccC---------------------------------CCceEEecCCCceEEEEEecCCcceeeecceeeecce
Confidence            5555555443                                 33689999999999999998 4444433 55688999


Q ss_pred             eEeeecCCc--eEEEeeCCCcEEEeecCC-CCceeeeecccccceEEEEecCCcEEEEEECCCC--CeEEEeccCC
Q psy12697        526 LDVDWQSNT--SFASCSTDQHIHVCKLHS-DKPVKSFEGHTTGQLVHSYKGTGGIFEVCWNSRG--DKVGASASDG  596 (602)
Q Consensus       526 ~~~~~s~~~--~l~~~~~d~~i~iw~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg--~~l~~~~~dg  596 (602)
                      .++.-+|..  ++++|+.|..|++||.++ ++|+..            -+..+.|+.+.++|.-  +.|+++=.+|
T Consensus       214 ~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~------------~~v~GGVWRi~~~p~~~~~lL~~CMh~G  277 (339)
T KOG0280|consen  214 VSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFK------------AKVGGGVWRIKHHPEIFHRLLAACMHNG  277 (339)
T ss_pred             EEEecCCCCCceEEEeccccceeeeehhcccCcccc------------CccccceEEEEecchhhhHHHHHHHhcC
Confidence            999998765  999999999999999863 344432            2234789999998853  3445444444

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=99.21  E-value=3.9e-08  Score=96.35  Aligned_cols=303  Identities=10%  Similarity=0.036  Sum_probs=178.3

Q ss_pred             CCEEEEeeCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCcee-EEeeCCCCCeEEEEeCCCeEEEEcCC-C
Q psy12697        234 KDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVT-SLDWNNNGSFLATGSYDGYARIWTSD-G  311 (602)
Q Consensus       234 ~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~l~~~~~dg~i~i~~~~-~  311 (602)
                      +..+++++.++.+.-+|..+++............. ..     ......+. .+..  ++..+++++.+|.+..+|.+ |
T Consensus        69 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~-~~-----~~~~~~~~~~~~v--~~~~v~v~~~~g~l~ald~~tG  140 (394)
T PRK11138         69 YNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGW-FS-----KNKSALLSGGVTV--AGGKVYIGSEKGQVYALNAEDG  140 (394)
T ss_pred             CCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccc-cc-----cccccccccccEE--ECCEEEEEcCCCEEEEEECCCC
Confidence            55677777788888888887776543322210000 00     00000000 0111  35567788889999999975 6


Q ss_pred             cceeecccccCCeEE-EEEccCCCEEEEEecCCcEEEEeCCCCceeEEeeeccCCe-----eeeeccCCCeEEEeeCCCe
Q psy12697        312 SLKSTLGQHKGPIFA-LKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPA-----LDVDWQSNTSFASCSTDQH  385 (602)
Q Consensus       312 ~~~~~~~~~~~~i~~-~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~  385 (602)
                      +..-...... .+.+ ...  .+..++.++.++.+..+|..+|+.+..........     ..... .++.++++..+|.
T Consensus       141 ~~~W~~~~~~-~~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v-~~~~v~~~~~~g~  216 (394)
T PRK11138        141 EVAWQTKVAG-EALSRPVV--SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPAT-AFGGAIVGGDNGR  216 (394)
T ss_pred             CCcccccCCC-ceecCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEE-ECCEEEEEcCCCE
Confidence            6555443322 2221 111  24467778889999999999999988776432111     01111 1456778888999


Q ss_pred             EEEEEcCCCceeeEeccCCC-------CeEEEEECC--CCCEEEEEECCCeEEEEeCCCCeeeEeeccccccEEEEEECC
Q psy12697        386 IHVCKLHSDKPVKSFEGHTN-------EVNAIKWDP--QGLLLASCSDDMTLKIWSLDKDNCVHDLQAHNKEIYTIKWSP  456 (602)
Q Consensus       386 i~i~d~~~~~~~~~~~~~~~-------~i~~~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~  456 (602)
                      +..+|..+++.+........       ....+..+|  .+..++.++.+|.+..+|..+++.+.......  .       
T Consensus       217 v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~--~-------  287 (394)
T PRK11138        217 VSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKREYGS--V-------  287 (394)
T ss_pred             EEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeecCCC--c-------
Confidence            99999999887654431110       011112233  34567778889999999999987765432110  0       


Q ss_pred             CCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeeecccCC-CeeEeeecCCce
Q psy12697        457 TGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSA-PALDVDWQSNTS  535 (602)
Q Consensus       457 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-~v~~~~~s~~~~  535 (602)
                                                 ..+  ..++..++.++.+|.+..+|..+|+.+.....-.. ...+... -++.
T Consensus       288 ---------------------------~~~--~~~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v-~~g~  337 (394)
T PRK11138        288 ---------------------------NDF--AVDGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVL-YNGY  337 (394)
T ss_pred             ---------------------------cCc--EEECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEE-ECCE
Confidence                                       000  11445677788899999999999987654332111 1122222 2458


Q ss_pred             EEEeeCCCcEEEeecCCCCceeeeecccccceEEEEecCCcEE-EEEECCCCCeEEEeccCCeEEe
Q psy12697        536 FASCSTDQHIHVCKLHSDKPVKSFEGHTTGQLVHSYKGTGGIF-EVCWNSRGDKVGASASDGSVFK  600 (602)
Q Consensus       536 l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~l~~spdg~~l~~~~~dg~v~i  600 (602)
                      ++.++.||.+.+.|..+++.+...+...           ..+. ...+  .+..|++++.||.++.
T Consensus       338 l~v~~~~G~l~~ld~~tG~~~~~~~~~~-----------~~~~s~P~~--~~~~l~v~t~~G~l~~  390 (394)
T PRK11138        338 LVVGDSEGYLHWINREDGRFVAQQKVDS-----------SGFLSEPVV--ADDKLLIQARDGTVYA  390 (394)
T ss_pred             EEEEeCCCEEEEEECCCCCEEEEEEcCC-----------CcceeCCEE--ECCEEEEEeCCceEEE
Confidence            8889999999999988887666554321           1111 1122  2557888999998754

>KOG4190|consensus

Probab=99.18  E-value=1.6e-10  Score=107.36  Aligned_cols=279  Identities=15%  Similarity=0.173  Sum_probs=189.5

Q ss_pred             CCCCceeEEeeCCCCCeEEEEeCCCeEEEEcCCC--------cceeecccccCCeEEEEEccCCCEEEEEecCCcEEEEe
Q psy12697        278 PSNKDVTSLDWNNNGSFLATGSYDGYARIWTSDG--------SLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWD  349 (602)
Q Consensus       278 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~--------~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~wd  349 (602)
                      .|...|..++--.+.+.+++++.|.+|++|.++.        ....++..|+.+|.++.|..+-++++++  ||.+.+||
T Consensus       733 GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~giHlWD  810 (1034)
T KOG4190|consen  733 GHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DGGIHLWD  810 (1034)
T ss_pred             CcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cCcceeec
Confidence            4567788887777888899999999999999652        2456778999999999999988877765  78899999


Q ss_pred             CCCCceeEEeee--cc---CCeeeeeccCCCe-EEEeeCCCeEEEEEcCCCceeeEec-----cCCCCeEEEEECCCCCE
Q psy12697        350 AASGQCEQQFSF--HS---APALDVDWQSNTS-FASCSTDQHIHVCKLHSDKPVKSFE-----GHTNEVNAIKWDPQGLL  418 (602)
Q Consensus       350 ~~~~~~~~~~~~--~~---~~~~~~~~~~~~~-~~~~~~~~~i~i~d~~~~~~~~~~~-----~~~~~i~~~~~~~~~~~  418 (602)
                      .--++.+.++..  ..   ..+.++.-..... ++.++...+|+++|.+..+.+..++     +.+..+.+++..|.|++
T Consensus       811 PFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~~GN~  890 (1034)
T KOG4190|consen  811 PFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVADKGNK  890 (1034)
T ss_pred             ccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEeccCcch
Confidence            887776654322  11   2233333222233 3444788999999999987666554     34566899999999999


Q ss_pred             EEEEECCCeEEEEeCCCCeeeEeeccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEE
Q psy12697        419 LASCSDDMTLKIWSLDKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSA  498 (602)
Q Consensus       419 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~  498 (602)
                      ++.+-.+|.|.+.|.++|+.+...+........++-                                   |..+.|+..
T Consensus       891 lAa~LSnGci~~LDaR~G~vINswrpmecdllqlaa-----------------------------------psdq~L~~s  935 (1034)
T KOG4190|consen  891 LAAALSNGCIAILDARNGKVINSWRPMECDLLQLAA-----------------------------------PSDQALAQS  935 (1034)
T ss_pred             hhHHhcCCcEEEEecCCCceeccCCcccchhhhhcC-----------------------------------chhHHHHhh
Confidence            999999999999999999888766554333322221                                   233557777


Q ss_pred             eCCCeEEE-EeCCCCceeeeecccCCCeeEeeecCCc-eEEEeeCCCcEEEeecCCCCceeeeecccccceEEEEecCCc
Q psy12697        499 GVDKTTII-WDAASGQCEQQFSFHSAPALDVDWQSNT-SFASCSTDQHIHVCKLHSDKPVKSFEGHTTGQLVHSYKGTGG  576 (602)
Q Consensus       499 ~~dg~i~i-wd~~~~~~~~~~~~~~~~v~~~~~s~~~-~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~  576 (602)
                      ..|.++.+ |...+|......+....+..-+  -.-| .+++......+.+|.-....     ....+-..++.-...+.
T Consensus       936 aldHslaVnWhaldgimh~q~kpppepahfl--qsvgpSLV~a~~Gn~lgVYad~a~~-----ha~stitKiR~d~f~G~ 1008 (1034)
T KOG4190|consen  936 ALDHSLAVNWHALDGIMHLQDKPPPEPAHFL--QSVGPSLVTAQNGNILGVYADSAEL-----HAESTITKIRPDEFPGT 1008 (1034)
T ss_pred             cccceeEeeehhcCCeeeeccCCCCcchhhh--hccCceeEEeccCcEEEEEecchhh-----hhhhhhccccccccCCc
Confidence            78888888 9877776555544333332111  1123 67777777778888521110     00111111222223566


Q ss_pred             EEEEEECCCCCeEEEeccCCeEEe
Q psy12697        577 IFEVCWNSRGDKVGASASDGSVFK  600 (602)
Q Consensus       577 i~~l~~spdg~~l~~~~~dg~v~i  600 (602)
                      .++++--|-..-...|.+.|.|.+
T Consensus      1009 lTala~LPLN~afLaGne~G~IaL 1032 (1034)
T KOG4190|consen 1009 LTALAPLPLNCAFLAGNEHGAIAL 1032 (1034)
T ss_pred             cceeeeccccchhhccCCCCceee
Confidence            788888888877788888888765

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.18  E-value=3.7e-08  Score=106.65  Aligned_cols=255  Identities=12%  Similarity=0.119  Sum_probs=161.5

Q ss_pred             eEEeeCCC-CCeEEEEeCCCeEEEEcCCCcceeeccc--------------ccCCeEEEEEccCCCEEEEEec-CCcEEE
Q psy12697        284 TSLDWNNN-GSFLATGSYDGYARIWTSDGSLKSTLGQ--------------HKGPIFALKWNKRGNYILSAGV-DKTTII  347 (602)
Q Consensus       284 ~~~~~~~~-~~~l~~~~~dg~i~i~~~~~~~~~~~~~--------------~~~~i~~~~~~~~~~~l~~~~~-dg~i~~  347 (602)
                      ..+++++. +.++++-..++.|+++|..+.....+..              .-.....++++++++.|+++.. .+.|+.
T Consensus       571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir~  650 (1057)
T PLN02919        571 GKLAIDLLNNRLFISDSNHNRIVVTDLDGNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALRE  650 (1057)
T ss_pred             ceEEEECCCCeEEEEECCCCeEEEEeCCCCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEEE
Confidence            46788874 6677777778899999988876544432              1123578999998887766654 567999


Q ss_pred             EeCCCCceeEEeeec-----------------cCCeeeeeccC-CCe-EEEeeCCCeEEEEEcCCCceeeEecc------
Q psy12697        348 WDAASGQCEQQFSFH-----------------SAPALDVDWQS-NTS-FASCSTDQHIHVCKLHSDKPVKSFEG------  402 (602)
Q Consensus       348 wd~~~~~~~~~~~~~-----------------~~~~~~~~~~~-~~~-~~~~~~~~~i~i~d~~~~~~~~~~~~------  402 (602)
                      +|..++... .+...                 -.....+++++ ++. +++...++.|++||..++... .+.+      
T Consensus       651 id~~~~~V~-tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~-~~~G~G~~~~  728 (1057)
T PLN02919        651 IDFVNETVR-TLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTR-VFSGDGYERN  728 (1057)
T ss_pred             EecCCCEEE-EEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEE-EEecCCcccc
Confidence            998776432 22110                 11235678887 444 556667889999998776432 1111      


Q ss_pred             ---------CCCCeEEEEECCCCCEE-EEEECCCeEEEEeCCCCeeeEeeccccc-cEEEEEECC-CCCCCCCCCcceee
Q psy12697        403 ---------HTNEVNAIKWDPQGLLL-ASCSDDMTLKIWSLDKDNCVHDLQAHNK-EIYTIKWSP-TGPETSNPNMSLIF  470 (602)
Q Consensus       403 ---------~~~~i~~~~~~~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~i~~~~~~~-~~~~~~~~~~~~~~  470 (602)
                               .-.....++++|+++.| ++-+.++.|++||+.++.......+... ......|.. ++.           
T Consensus       729 ~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~-----------  797 (1057)
T PLN02919        729 LNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGV-----------  797 (1057)
T ss_pred             CCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCc-----------
Confidence                     11235679999999854 4555678999999987643211100000 000000000 000           


Q ss_pred             eeeeccCCccCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeeec-------------ccCCCeeEeeecCCc-eE
Q psy12697        471 ILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFS-------------FHSAPALDVDWQSNT-SF  536 (602)
Q Consensus       471 ~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-------------~~~~~v~~~~~s~~~-~l  536 (602)
                          .....-.....++++++|+++++-..++.|++||..++.......             +.-.....++++++| .+
T Consensus       798 ----g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~ly  873 (1057)
T PLN02919        798 ----GSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLF  873 (1057)
T ss_pred             ----hhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEE
Confidence                000011223588999999999998999999999998776543221             111246789999999 77


Q ss_pred             EEeeCCCcEEEeecCCCCc
Q psy12697        537 ASCSTDQHIHVCKLHSDKP  555 (602)
Q Consensus       537 ~~~~~d~~i~iw~~~~~~~  555 (602)
                      ++-+.++.|++||+.+++.
T Consensus       874 VaDt~Nn~Irvid~~~~~~  892 (1057)
T PLN02919        874 VADTNNSLIRYLDLNKGEA  892 (1057)
T ss_pred             EEECCCCEEEEEECCCCcc
Confidence            8888899999999988764

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=99.15  E-value=8.8e-08  Score=93.87  Aligned_cols=307  Identities=11%  Similarity=0.004  Sum_probs=184.1

Q ss_pred             CCCeEEEeeCCceEEEEecCCceeEEEeeccCceEEEEeCCCCCCCCCCCCccccccccccCCcceEeeCC-CcceE-EE
Q psy12697        151 DGKFLASGSFDKCVHIWSARTGQLVHSYKGTGGIFEVCWNSRGTPPNPPESMEVDASIEIPQSKATKLIGH-ESEVF-IC  228 (602)
Q Consensus       151 d~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h-~~~v~-~~  228 (602)
                      .+..++.++.++.+.-+|.++|+.+-+.+......                               .+... ...+. .+
T Consensus        68 ~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~-------------------------------~~~~~~~~~~~~~~  116 (394)
T PRK11138         68 AYNKVYAADRAGLVKALDADTGKEIWSVDLSEKDG-------------------------------WFSKNKSALLSGGV  116 (394)
T ss_pred             ECCEEEEECCCCeEEEEECCCCcEeeEEcCCCccc-------------------------------cccccccccccccc
Confidence            36677888888999999999999886654321000                               00000 00000 01


Q ss_pred             EEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeE-EeeCCCCCeEEEEeCCCeEEEE
Q psy12697        229 AWNPVKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTS-LDWNNNGSFLATGSYDGYARIW  307 (602)
Q Consensus       229 ~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~~~~l~~~~~dg~i~i~  307 (602)
                      ..  ++..++.++.++.+..+|.++++.........                 .+.+ ...  .+..+++++.+|.+..+
T Consensus       117 ~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~-----------------~~~ssP~v--~~~~v~v~~~~g~l~al  175 (394)
T PRK11138        117 TV--AGGKVYIGSEKGQVYALNAEDGEVAWQTKVAG-----------------EALSRPVV--SDGLVLVHTSNGMLQAL  175 (394)
T ss_pred             EE--ECCEEEEEcCCCEEEEEECCCCCCcccccCCC-----------------ceecCCEE--ECCEEEEECCCCEEEEE
Confidence            11  35567778889999999999988765443321                 1110 011  23467777888889999


Q ss_pred             cCC-CcceeecccccCCe-----EEEEEccCCCEEEEEecCCcEEEEeCCCCceeEEeeeccCC-------eeeeecc--
Q psy12697        308 TSD-GSLKSTLGQHKGPI-----FALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAP-------ALDVDWQ--  372 (602)
Q Consensus       308 ~~~-~~~~~~~~~~~~~i-----~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~-------~~~~~~~--  372 (602)
                      |.+ |+..-........+     .....  .+..++.++.+|.+..+|..+|+...........       ...+..+  
T Consensus       176 d~~tG~~~W~~~~~~~~~~~~~~~sP~v--~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~  253 (394)
T PRK11138        176 NESDGAVKWTVNLDVPSLTLRGESAPAT--AFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPV  253 (394)
T ss_pred             EccCCCEeeeecCCCCcccccCCCCCEE--ECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcE
Confidence            875 55554443211100     01111  1235777788999999999999877655422110       0111112  


Q ss_pred             -CCCeEEEeeCCCeEEEEEcCCCceeeEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeeeEeeccccccEEE
Q psy12697        373 -SNTSFASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHDLQAHNKEIYT  451 (602)
Q Consensus       373 -~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~  451 (602)
                       .++.+++++.+|.+..+|..+++.+.+...  .....+..  .+..++.++.+|.+..+|..+++.+..........  
T Consensus       254 v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~--~~~~~~~~--~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~--  327 (394)
T PRK11138        254 VVGGVVYALAYNGNLVALDLRSGQIVWKREY--GSVNDFAV--DGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRL--  327 (394)
T ss_pred             EECCEEEEEEcCCeEEEEECCCCCEEEeecC--CCccCcEE--ECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCc--
Confidence             256777888899999999999987655432  11112222  45678888899999999999887665432111000  


Q ss_pred             EEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeeecccCCCeeEeeec
Q psy12697        452 IKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQ  531 (602)
Q Consensus       452 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s  531 (602)
                                                 ...++    .  .+.+|+.++.||.|.+.|..+|+.+...+.....+.+--.-
T Consensus       328 ---------------------------~~sp~----v--~~g~l~v~~~~G~l~~ld~~tG~~~~~~~~~~~~~~s~P~~  374 (394)
T PRK11138        328 ---------------------------LTAPV----L--YNGYLVVGDSEGYLHWINREDGRFVAQQKVDSSGFLSEPVV  374 (394)
T ss_pred             ---------------------------ccCCE----E--ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCcceeCCEE
Confidence                                       00111    1  24567888999999999999999887776443333321111


Q ss_pred             CCceEEEeeCCCcEEEeec
Q psy12697        532 SNTSFASCSTDQHIHVCKL  550 (602)
Q Consensus       532 ~~~~l~~~~~d~~i~iw~~  550 (602)
                      .++.|+.++.||.++.+++
T Consensus       375 ~~~~l~v~t~~G~l~~~~~  393 (394)
T PRK11138        375 ADDKLLIQARDGTVYAITR  393 (394)
T ss_pred             ECCEEEEEeCCceEEEEeC
Confidence            2458888999999988763

>KOG4190|consensus

Probab=99.15  E-value=1.8e-10  Score=106.98  Aligned_cols=250  Identities=16%  Similarity=0.190  Sum_probs=168.1

Q ss_pred             eeeeeccCCceEEEEECCCCCeEEEeeCCceEEEEecCCc-eeEEEeeccCceEEEEeCCCCCCCCCCCCcccccccccc
Q psy12697        133 LNTLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTG-QLVHSYKGTGGIFEVCWNSRGTPPNPPESMEVDASIEIP  211 (602)
Q Consensus       133 ~~~l~~h~~~V~~~~~s~d~~~l~s~~~d~~v~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (602)
                      +..+.||+..|..++--.+.+-+++++.|++|++|.++.. ..+.                                  .
T Consensus       728 L~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~----------------------------------t  773 (1034)
T KOG4190|consen  728 LCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIG----------------------------------T  773 (1034)
T ss_pred             eecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccc----------------------------------c
Confidence            4678899999999988888889999999999999998642 1111                                  1


Q ss_pred             CCcceEeeCCCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEeeCCC
Q psy12697        212 QSKATKLIGHESEVFICAWNPVKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNN  291 (602)
Q Consensus       212 ~~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  291 (602)
                      .....++..|..+|..+.|-.+.++++++  ||.|.+||.--+.......-..           .....+.|.|+. +-+
T Consensus       774 saCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~giHlWDPFigr~Laq~~dap-----------k~~a~~~ikcl~-nv~  839 (1034)
T KOG4190|consen  774 SACQFTYQAHKKPIHDIGFLADLRSIASC--DGGIHLWDPFIGRLLAQMEDAP-----------KEGAGGNIKCLE-NVD  839 (1034)
T ss_pred             ceeeeEhhhccCcccceeeeeccceeeec--cCcceeecccccchhHhhhcCc-----------ccCCCceeEecc-cCc
Confidence            11225567899999999999988888775  7889999975554332111000           000112333332 113


Q ss_pred             CCeEEEE-eCCCeEEEEcCC-Ccceeec-----ccccCCeEEEEEccCCCEEEEEecCCcEEEEeCCCCceeEEeeeccC
Q psy12697        292 GSFLATG-SYDGYARIWTSD-GSLKSTL-----GQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSA  364 (602)
Q Consensus       292 ~~~l~~~-~~dg~i~i~~~~-~~~~~~~-----~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~  364 (602)
                      ...+++| +...+|+++|.+ .+....+     .+....+.+++..+.|+.++++-..|.+.+.|.++|+.+..+.....
T Consensus       840 ~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswrpmec  919 (1034)
T KOG4190|consen  840 RHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVADKGNKLAAALSNGCIAILDARNGKVINSWRPMEC  919 (1034)
T ss_pred             chheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEeccCcchhhHHhcCCcEEEEecCCCceeccCCcccc
Confidence            4444444 678899999976 2222222     34456789999999999999999999999999999999988877776


Q ss_pred             CeeeeeccCCCeEEEeeCCCeEEE-EEcCCCceeeEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEe
Q psy12697        365 PALDVDWQSNTSFASCSTDQHIHV-CKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWS  432 (602)
Q Consensus       365 ~~~~~~~~~~~~~~~~~~~~~i~i-~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd  432 (602)
                      ....++-..+..++....|.++.+ |..-.+....+.+....+..-+  -.-|.-|++......+.+|.
T Consensus       920 dllqlaapsdq~L~~saldHslaVnWhaldgimh~q~kpppepahfl--qsvgpSLV~a~~Gn~lgVYa  986 (1034)
T KOG4190|consen  920 DLLQLAAPSDQALAQSALDHSLAVNWHALDGIMHLQDKPPPEPAHFL--QSVGPSLVTAQNGNILGVYA  986 (1034)
T ss_pred             hhhhhcCchhHHHHhhcccceeEeeehhcCCeeeeccCCCCcchhhh--hccCceeEEeccCcEEEEEe
Confidence            666666666666777777888888 8766554443333222221111  11355677776666777774

>KOG4532|consensus

Probab=99.13  E-value=3e-08  Score=84.08  Aligned_cols=253  Identities=12%  Similarity=0.035  Sum_probs=162.7

Q ss_pred             cceeeeecccce--eeeeeeccCCceEEEEECC-----CCCeEEEeeCCceEEEEecCCceeEEEeeccCceEEEEeCCC
Q psy12697        120 LTLPLWDVERGE--CLNTLTRHTEPVYSVAFSP-----DGKFLASGSFDKCVHIWSARTGQLVHSYKGTGGIFEVCWNSR  192 (602)
Q Consensus       120 ~~i~vwd~~~~~--~~~~l~~h~~~V~~~~~s~-----d~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~  192 (602)
                      .++.+|+.-+..  .+...       +.+.|-|     ...+||.|+.-|...+|...+.+.....-             
T Consensus        52 ~sv~i~~~y~N~~~iv~~y-------~g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~c-------------  111 (344)
T KOG4532|consen   52 ISVPINSHYSNPKGIVEFY-------TGMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLYQC-------------  111 (344)
T ss_pred             eeeEeccccCCchhhEEee-------ecccccchHhhccccEEEeccccceeeeecccCcccceeee-------------
Confidence            467788876544  22222       3456666     45689999999999999998765432211             


Q ss_pred             CCCCCCCCCccccccccccCCcceEeeCCCcceEEEEEcCC-CCEEEEeeCCCcEEEEeCCCCCCCCCccceEEEEEEec
Q psy12697        193 GTPPNPPESMEVDASIEIPQSKATKLIGHESEVFICAWNPV-KDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCIS  271 (602)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~-~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~  271 (602)
                                                ..|...|.-+.=..+ ..-+..++.|.++++.+++.+........+        
T Consensus       112 --------------------------d~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~--------  157 (344)
T KOG4532|consen  112 --------------------------DVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQ--------  157 (344)
T ss_pred             --------------------------cccccchhhhhhhcccccceeeccCCcceeEEEEecCcccceeecc--------
Confidence                                      112222211111111 234667788899999988765433211111        


Q ss_pred             CCCcccCCCCceeEEeeCCCCCeEEEEeCCCeEEEEcCCCccee----ecccccCCeEEEEEccCCCEEEEEecCCcEEE
Q psy12697        272 KGGTEVPSNKDVTSLDWNNNGSFLATGSYDGYARIWTSDGSLKS----TLGQHKGPIFALKWNKRGNYILSAGVDKTTII  347 (602)
Q Consensus       272 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~----~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~  347 (602)
                              .-.+.+++++++++++++.+....|..|.++.....    ........-.+..|+.....++++..||++.|
T Consensus       158 --------~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I  229 (344)
T KOG4532|consen  158 --------NLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAI  229 (344)
T ss_pred             --------ccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEE
Confidence                    122788999999999999999999999987643221    23334445568889999999999999999999


Q ss_pred             EeCCCCceeE-----EeeeccCCeeeeeccCCC---eEEEeeCCCeEEEEEcCCCceeeEecc-------CCC-CeEEEE
Q psy12697        348 WDAASGQCEQ-----QFSFHSAPALDVDWQSNT---SFASCSTDQHIHVCKLHSDKPVKSFEG-------HTN-EVNAIK  411 (602)
Q Consensus       348 wd~~~~~~~~-----~~~~~~~~~~~~~~~~~~---~~~~~~~~~~i~i~d~~~~~~~~~~~~-------~~~-~i~~~~  411 (602)
                      ||++......     +-..|.+.+..+.|++.+   .++..-.-+.+.+.|+++++..+.+..       |.. .|....
T Consensus       230 ~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~  309 (344)
T KOG4532|consen  230 YDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTN  309 (344)
T ss_pred             EEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCcccccccccccccccc
Confidence            9998764432     224477888889998754   355555668899999999875544332       222 266667


Q ss_pred             ECCCCCEEEEEECCCeEEEEeCCC
Q psy12697        412 WDPQGLLLASCSDDMTLKIWSLDK  435 (602)
Q Consensus       412 ~~~~~~~l~~~~~dg~i~iwd~~~  435 (602)
                      |+.++.-+.+.+++ .+.-|++.+
T Consensus       310 f~~~n~s~~v~~e~-~~ae~ni~s  332 (344)
T KOG4532|consen  310 FNNENESNDVKNEL-QGAEYNILS  332 (344)
T ss_pred             ccCCCcccccccch-hhheeeccc
Confidence            77766655555543 244455443

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=99.12  E-value=9.5e-08  Score=82.52  Aligned_cols=227  Identities=14%  Similarity=0.164  Sum_probs=136.9

Q ss_pred             EeeCCCCCeEEEEeCCCeEEEEcCCCc---ce---eecccccCCeEEEEEccCCCEEEEEecCCcEEEEeCCCCceeEEe
Q psy12697        286 LDWNNNGSFLATGSYDGYARIWTSDGS---LK---STLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQF  359 (602)
Q Consensus       286 ~~~~~~~~~l~~~~~dg~i~i~~~~~~---~~---~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~  359 (602)
                      ++.+++|+.||+. .|..|.+-..+..   .+   ...+.....=+.++||||+..|+.+...|+|+++|+.... +..+
T Consensus         3 ~~~~~~Gk~lAi~-qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~-lf~I   80 (282)
T PF15492_consen    3 LALSSDGKLLAIL-QDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSE-LFVI   80 (282)
T ss_pred             eeecCCCcEEEEE-eccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecccce-eEEc
Confidence            4567788877664 5666777654321   11   1222233345789999999999999999999999987533 3333


Q ss_pred             eec-------cCCeeeeeccCC-------CeEEEeeCCCeEEEEEcCC-----CceeeEe--cc-CCCCeEEEEECCCCC
Q psy12697        360 SFH-------SAPALDVDWQSN-------TSFASCSTDQHIHVCKLHS-----DKPVKSF--EG-HTNEVNAIKWDPQGL  417 (602)
Q Consensus       360 ~~~-------~~~~~~~~~~~~-------~~~~~~~~~~~i~i~d~~~-----~~~~~~~--~~-~~~~i~~~~~~~~~~  417 (602)
                      ...       ...+..+.|.+.       ..+++-...|.++-|-+..     .+....+  .. +...|.++.++|..+
T Consensus        81 ~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~  160 (282)
T PF15492_consen   81 PPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHR  160 (282)
T ss_pred             CcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCC
Confidence            221       133445555443       2477777888877776532     1222232  22 356899999999999


Q ss_pred             EEEEEECCC-----------eEEEEeCCCCeeeEeeccccccEEEEEECCCCCCCCCCCcceee----eeeeccCCccCC
Q psy12697        418 LLASCSDDM-----------TLKIWSLDKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIF----ILKSTLGQHKGP  482 (602)
Q Consensus       418 ~l~~~~~dg-----------~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~  482 (602)
                      +|++|+...           -+.-|.+-++.+-...-         .-.++.............    .+..........
T Consensus       161 LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v---------~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~  231 (282)
T PF15492_consen  161 LLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQV---------TSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDG  231 (282)
T ss_pred             EEEEeccCCCCCccccccccCceEEEEcCCCCcEEEc---------cccCccccccccccceeeccceeeeeccccCCCc
Confidence            888887432           14445444333221110         000111100100011111    011122446788


Q ss_pred             eEEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeeecccCC
Q psy12697        483 IFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSA  523 (602)
Q Consensus       483 v~~i~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~  523 (602)
                      |..|..||||+.||+...+|.|.+|++.+-++.+.+..+..
T Consensus       232 i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W~~~eq  272 (282)
T PF15492_consen  232 IFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSWKQDEQ  272 (282)
T ss_pred             eEEEEECCCCCEEEEEEcCCeEEEEecCcchhhcccchhhC
Confidence            99999999999999999999999999999888877765443

>PF08513 LisH: LisH; InterPro: IPR013720 The LisH motif is found in a large number of eukaryotic proteins, from metazoa, fungi and plants that have a wide range of functions

Probab=99.12  E-value=4.6e-12  Score=67.76  Aligned_cols=27  Identities=41%  Similarity=0.800  Sum_probs=24.7

Q ss_pred             cchhhhhhhhhhhcCceeeeecccccc
Q psy12697          6 DEVNFLVYRYLQESGFQHSAYTFGIES   32 (602)
Q Consensus         6 ~e~n~li~ryL~e~g~~~~a~~~~~e~   32 (602)
                      ++||+|||+||+++||.+||.+|.+|+
T Consensus         1 ~~Ln~lI~~YL~~~Gy~~tA~~f~~Ea   27 (27)
T PF08513_consen    1 EELNQLIYDYLVENGYKETAKAFAKEA   27 (27)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHCCcHHHHHHHHhcC
Confidence            589999999999999999999999986

The recently solved structure of the LisH domain in the N-terminal region of LIS1 depicted it as a novel dimerization motif, and that other structural elements are likely to play an important role in dimerisation [, , ]. The LisH (lis homology) domain mediates protein dimerisation and tetramerisation. The LisH domain is found in Sif2, a component of the Set3 complex which is responsible for repressing meiotic genes. It has been shown that the LisH domain helps mediate interaction with components of the Set3 complex []. ; PDB: 2XTE_L 2XTC_B 2XTD_A 1UUJ_B.

>KOG4532|consensus

Probab=99.11  E-value=3.6e-08  Score=83.61  Aligned_cols=230  Identities=10%  Similarity=0.053  Sum_probs=149.3

Q ss_pred             CCCEEEEEecCCcEEEEeCCCCceeEEe-eeccCCeeeeec--cCCCeEEEeeCCCeEEEEEcCCCceeeEeccCCCCeE
Q psy12697        332 RGNYILSAGVDKTTIIWDAASGQCEQQF-SFHSAPALDVDW--QSNTSFASCSTDQHIHVCKLHSDKPVKSFEGHTNEVN  408 (602)
Q Consensus       332 ~~~~l~~~~~dg~i~~wd~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~  408 (602)
                      ...+|+.|+..|...+|...+.+....+ ..+...+.-+.-  .....+..++.|.++++.++..+..-.......-.+.
T Consensus        83 kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~n  162 (344)
T KOG4532|consen   83 KCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQN  162 (344)
T ss_pred             cccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccceeecccccee
Confidence            3457899999999999998866543322 222222211111  1123477888888888888765543222221222378


Q ss_pred             EEEECCCCCEEEEEECCCeEEEEeCCCCe-eeEeeccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEE
Q psy12697        409 AIKWDPQGLLLASCSDDMTLKIWSLDKDN-CVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALK  487 (602)
Q Consensus       409 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~  487 (602)
                      +++++++++++++.++...|..|.++... .+....          ..|                      ....=.+..
T Consensus       163 s~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~----------~a~----------------------t~D~gF~~S  210 (344)
T KOG4532|consen  163 SLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIY----------EAP----------------------TSDHGFYNS  210 (344)
T ss_pred             eeEEcCCCceEEEecCCCcceEEEeCCccceeeeeE----------ecc----------------------cCCCceeee
Confidence            99999999999999999999999987532 211111          111                      112223566


Q ss_pred             EccCCCEEEEEeCCCeEEEEeCCCCcee-----eeecccCCCeeEeeecCCc---eEEEeeCCCcEEEeecCCCCceeee
Q psy12697        488 WNKRGNYILSAGVDKTTIIWDAASGQCE-----QQFSFHSAPALDVDWQSNT---SFASCSTDQHIHVCKLHSDKPVKSF  559 (602)
Q Consensus       488 ~s~~~~~l~s~~~dg~i~iwd~~~~~~~-----~~~~~~~~~v~~~~~s~~~---~l~~~~~d~~i~iw~~~~~~~~~~~  559 (602)
                      |+.....+|++..||++.|||++.-...     .+-..|.+.+..+.|++-|   +|+..-.-+.+.+-|+++++....+
T Consensus       211 ~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I  290 (344)
T KOG4532|consen  211 FSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVI  290 (344)
T ss_pred             eccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEE
Confidence            7778889999999999999999864332     2223488899999999877   5666666788999999988755544


Q ss_pred             ecccccceEEEEec-CCcEEEEEECCCCCeEEEeccCCe
Q psy12697        560 EGHTTGQLVHSYKG-TGGIFEVCWNSRGDKVGASASDGS  597 (602)
Q Consensus       560 ~~~~~~~~~~~~~~-~~~i~~l~~spdg~~l~~~~~dg~  597 (602)
                      .-..+.    .+++ ...|+.-.|+.++..+.+.+++..
T Consensus       291 ~i~~d~----~~~~~tq~ifgt~f~~~n~s~~v~~e~~~  325 (344)
T KOG4532|consen  291 VIPDDV----ERKHNTQHIFGTNFNNENESNDVKNELQG  325 (344)
T ss_pred             ecCccc----cccccccccccccccCCCcccccccchhh
Confidence            322211    1122 233777888888887777766543

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.09  E-value=1.6e-07  Score=101.79  Aligned_cols=264  Identities=11%  Similarity=0.065  Sum_probs=162.2

Q ss_pred             EEEEEcCC-CCEEEEeeCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEeeCCCCCeEEEEe-CCCe
Q psy12697        226 FICAWNPV-KDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFLATGS-YDGY  303 (602)
Q Consensus       226 ~~~~~~~~-~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~  303 (602)
                      ..+++++. +..+++-+.++.|++||........   ...........+......-.....++++++++.|+++. .++.
T Consensus       571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G~~i~~---ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~  647 (1057)
T PLN02919        571 GKLAIDLLNNRLFISDSNHNRIVVTDLDGNFIVQ---IGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHA  647 (1057)
T ss_pred             ceEEEECCCCeEEEEECCCCeEEEEeCCCCEEEE---EccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCce
Confidence            46788875 5567777778899999975431100   00000000000000001123468899999888666654 4578


Q ss_pred             EEEEcCCCcceeecccc-----------------cCCeEEEEEcc-CCCEEEEEecCCcEEEEeCCCCceeEEeeec---
Q psy12697        304 ARIWTSDGSLKSTLGQH-----------------KGPIFALKWNK-RGNYILSAGVDKTTIIWDAASGQCEQQFSFH---  362 (602)
Q Consensus       304 i~i~~~~~~~~~~~~~~-----------------~~~i~~~~~~~-~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~---  362 (602)
                      |+.+|..+..+.++.+.                 -.....++++| ++..+++.+.++.|++||..++.... +...   
T Consensus       648 Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~-~~G~G~~  726 (1057)
T PLN02919        648 LREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRV-FSGDGYE  726 (1057)
T ss_pred             EEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEE-EecCCcc
Confidence            99999876555544211                 11345799999 55556666778899999988775432 1110   


Q ss_pred             ------------cCCeeeeeccCCC--eEEEeeCCCeEEEEEcCCCceeeEec-------------c--------CCCCe
Q psy12697        363 ------------SAPALDVDWQSNT--SFASCSTDQHIHVCKLHSDKPVKSFE-------------G--------HTNEV  407 (602)
Q Consensus       363 ------------~~~~~~~~~~~~~--~~~~~~~~~~i~i~d~~~~~~~~~~~-------------~--------~~~~i  407 (602)
                                  -.....+++++++  .+++-..++.|++||+.++.......             .        .-...
T Consensus       727 ~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P  806 (1057)
T PLN02919        727 RNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHP  806 (1057)
T ss_pred             ccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCC
Confidence                        1234567888875  35566677999999998765321110             0        01134


Q ss_pred             EEEEECCCCCEEEEEECCCeEEEEeCCCCeeeEeeccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEE
Q psy12697        408 NAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALK  487 (602)
Q Consensus       408 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~  487 (602)
                      ..++++++|+++++-+.+++|++||..++...... +....     -.+++.               ...+.-.....++
T Consensus       807 ~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tia-G~G~~-----G~~dG~---------------~~~a~l~~P~GIa  865 (1057)
T PLN02919        807 LGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLA-GTGKA-----GFKDGK---------------ALKAQLSEPAGLA  865 (1057)
T ss_pred             ceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEe-ccCCc-----CCCCCc---------------ccccccCCceEEE
Confidence            68999999999888899999999999876544222 11100     001111               1122334567899


Q ss_pred             EccCCCEEEEEeCCCeEEEEeCCCCce
Q psy12697        488 WNKRGNYILSAGVDKTTIIWDAASGQC  514 (602)
Q Consensus       488 ~s~~~~~l~s~~~dg~i~iwd~~~~~~  514 (602)
                      ++++|+++++-+.++.|++||+.+++.
T Consensus       866 vd~dG~lyVaDt~Nn~Irvid~~~~~~  892 (1057)
T PLN02919        866 LGENGRLFVADTNNSLIRYLDLNKGEA  892 (1057)
T ss_pred             EeCCCCEEEEECCCCEEEEEECCCCcc
Confidence            999999999989999999999998865

>KOG0882|consensus

Probab=99.08  E-value=2.3e-09  Score=97.34  Aligned_cols=298  Identities=14%  Similarity=0.187  Sum_probs=187.7

Q ss_pred             cCCceEEEEECCCCCeEEEeeCCceEEEEecCCceeEEEeeccCceEEEEeCCCCCCCCCCCCccccccccccCCcceEe
Q psy12697        139 HTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKGTGGIFEVCWNSRGTPPNPPESMEVDASIEIPQSKATKL  218 (602)
Q Consensus       139 h~~~V~~~~~s~d~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  218 (602)
                      |.+.|+.+.-+ -.+++.+++.||.++.|--..-.-+.-                                     +..+
T Consensus         8 hrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isGvEf-------------------------------------VKhF   49 (558)
T KOG0882|consen    8 HRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRISGVEF-------------------------------------VKHF   49 (558)
T ss_pred             ccceeeeEeee-hhheEEeeecchhhhhcCCCCccceee-------------------------------------hhhh
Confidence            67777776543 467999999999999996432111100                                     1234


Q ss_pred             eCCCcceEEEEEcCCCCEEEEeeC-CCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEeeCCCC--CeE
Q psy12697        219 IGHESEVFICAWNPVKDFLASGSG-DSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNG--SFL  295 (602)
Q Consensus       219 ~~h~~~v~~~~~~~~~~~l~s~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~l  295 (602)
                      ..|-..|.+++.+-++.++.+.+. |..++++|+++-.......+..+              .+.+. ...++..  ..+
T Consensus        50 raHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~l--------------Pg~a~-wv~skGd~~s~I  114 (558)
T KOG0882|consen   50 RAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDL--------------PGFAE-WVTSKGDKISLI  114 (558)
T ss_pred             HHHHHHHHhhhccccceeEeeccCcccceeEEEeeccchhhhcccccC--------------CCceE-EecCCCCeeeeE
Confidence            568888999999999999999887 99999999987665432222211              01111 1112211  133


Q ss_pred             EE-EeCCCeEEEEcCCCc---ceeecccccCCeEEEEEccCCCEEEEEecCCcEEEEeCCCCceeEEeeeccCCeeeeec
Q psy12697        296 AT-GSYDGYARIWTSDGS---LKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDW  371 (602)
Q Consensus       296 ~~-~~~dg~i~i~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~  371 (602)
                      ++ ...+|.+.++|..+.   ....-.-|..+|..+.+++.+..+++....|.|.-|....  .   ++...   ..+  
T Consensus       115 AVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~--~---~qfPr---~~l--  184 (558)
T KOG0882|consen  115 AVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEG--P---FQFPR---TNL--  184 (558)
T ss_pred             EeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccccceeEeecCCC--c---ccCcc---ccc--
Confidence            33 345689999996643   3344456999999999999999999999999999998763  0   11000   001  


Q ss_pred             cCCCeEEEeeCCCeEEEEEcCCCceeeEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeeeEeeccccccEEE
Q psy12697        372 QSNTSFASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHDLQAHNKEIYT  451 (602)
Q Consensus       372 ~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~  451 (602)
                                      -|.+....-+..+........++.|+|++..+.+-+.|..|++++.++++.++.+......-..
T Consensus       185 ----------------~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~  248 (558)
T KOG0882|consen  185 ----------------NFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQY  248 (558)
T ss_pred             ----------------cccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhccchhhhh
Confidence                            1222222223333334556789999999999999999999999999999888776543221111


Q ss_pred             EEECCCCCCCCCCCcceeeeeeeccCCcc-CCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeee
Q psy12697        452 IKWSPTGPETSNPNMSLIFILKSTLGQHK-GPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQF  518 (602)
Q Consensus       452 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~i~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~  518 (602)
                      ..-+|-+  +..-...........+..|. ..-+.+.|...|++|+-++.=| |++.++.++.+.+.+
T Consensus       249 q~ks~y~--l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g-ikvin~~tn~v~ri~  313 (558)
T KOG0882|consen  249 QPKSPYG--LMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG-IKVINLDTNTVVRIL  313 (558)
T ss_pred             ccccccc--cceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-EEEEEeecCeEEEEe
Confidence            1111100  00000000011112222333 3446788999999999998877 999999998876654

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=99.08  E-value=5.8e-07  Score=81.87  Aligned_cols=218  Identities=11%  Similarity=0.074  Sum_probs=138.7

Q ss_pred             EEEEEcc-CCCEEEEEecCCcEEEEeCCCCceeEEeeeccCCeeeeecc-CCCeEEEeeCCCeEEEEEcCCCceeeEecc
Q psy12697        325 FALKWNK-RGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQ-SNTSFASCSTDQHIHVCKLHSDKPVKSFEG  402 (602)
Q Consensus       325 ~~~~~~~-~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~  402 (602)
                      .++.|.+ ++.++++-...+.|..|+..+++... +....  ...+.+. +++.++++...+. .++|..+++.......
T Consensus         3 Egp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~~--~~G~~~~~~~g~l~v~~~~~~-~~~d~~~g~~~~~~~~   78 (246)
T PF08450_consen    3 EGPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLPG--PNGMAFDRPDGRLYVADSGGI-AVVDPDTGKVTVLADL   78 (246)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESSS--EEEEEEECTTSEEEEEETTCE-EEEETTTTEEEEEEEE
T ss_pred             cceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecCC--CceEEEEccCCEEEEEEcCce-EEEecCCCcEEEEeec
Confidence            3578888 56666666678899999998876543 22222  5555555 7788888877555 4449888754433332


Q ss_pred             -----CCCCeEEEEECCCCCEEEEEECC--------CeEEEEeCCCCeeeEeeccccccEEEEEECCCCCCCCCCCccee
Q psy12697        403 -----HTNEVNAIKWDPQGLLLASCSDD--------MTLKIWSLDKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLI  469 (602)
Q Consensus       403 -----~~~~i~~~~~~~~~~~l~~~~~d--------g~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  469 (602)
                           .....+.++++|+|++.++....        |.|..++.. ++......                          
T Consensus        79 ~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~--------------------------  131 (246)
T PF08450_consen   79 PDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD--------------------------  131 (246)
T ss_dssp             ETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE--------------------------
T ss_pred             cCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEec--------------------------
Confidence                 34568899999999977776654        456666655 33222111                          


Q ss_pred             eeeeeccCCccCCeEEEEEccCCCEEE-EEeCCCeEEEEeCCCCce-------eeeecccCCCeeEeeecCCc-eEEEee
Q psy12697        470 FILKSTLGQHKGPIFALKWNKRGNYIL-SAGVDKTTIIWDAASGQC-------EQQFSFHSAPALDVDWQSNT-SFASCS  540 (602)
Q Consensus       470 ~~~~~~~~~~~~~v~~i~~s~~~~~l~-s~~~dg~i~iwd~~~~~~-------~~~~~~~~~~v~~~~~s~~~-~l~~~~  540 (602)
                               .-...+.|+|+|+++.|+ +-+..+.|..+++.....       ...+....+..-.+++..+| .+++..
T Consensus       132 ---------~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~  202 (246)
T PF08450_consen  132 ---------GLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADW  202 (246)
T ss_dssp             ---------EESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEE
T ss_pred             ---------CcccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEc
Confidence                     123356788999998765 556778899999853221       11222222236789999999 666666


Q ss_pred             CCCcEEEeecCCCCceeeeecccccceEEEEecCCcEEEEEE-CCCCCeEEEecc
Q psy12697        541 TDQHIHVCKLHSDKPVKSFEGHTTGQLVHSYKGTGGIFEVCW-NSRGDKVGASAS  594 (602)
Q Consensus       541 ~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~-spdg~~l~~~~~  594 (602)
                      ..+.|.+++.+ ++.+..+...           ...+++++| -|+.+.|++.+.
T Consensus       203 ~~~~I~~~~p~-G~~~~~i~~p-----------~~~~t~~~fgg~~~~~L~vTta  245 (246)
T PF08450_consen  203 GGGRIVVFDPD-GKLLREIELP-----------VPRPTNCAFGGPDGKTLYVTTA  245 (246)
T ss_dssp             TTTEEEEEETT-SCEEEEEE-S-----------SSSEEEEEEESTTSSEEEEEEB
T ss_pred             CCCEEEEECCC-ccEEEEEcCC-----------CCCEEEEEEECCCCCEEEEEeC
Confidence            78899999954 4444443322           156899999 578788877653

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>KOG3914|consensus

Probab=99.08  E-value=3.1e-09  Score=95.30  Aligned_cols=161  Identities=14%  Similarity=0.196  Sum_probs=102.2

Q ss_pred             eEEEEEccCCCEEEEEecCCcEEEEeCCCCce----eEEeeeccCCeeeeec-cCCCeEEEeeCCCe---EEEEEcCCCc
Q psy12697        324 IFALKWNKRGNYILSAGVDKTTIIWDAASGQC----EQQFSFHSAPALDVDW-QSNTSFASCSTDQH---IHVCKLHSDK  395 (602)
Q Consensus       324 i~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~----~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~---i~i~d~~~~~  395 (602)
                      ...+..++.+++++++..+....+++......    ......... ...+.+ ..+....++..-|.   +.+|....+ 
T Consensus        65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~-~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~-  142 (390)
T KOG3914|consen   65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKR-PTAISFIREDTSVLVADKAGDVYSFDILSADSG-  142 (390)
T ss_pred             ccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecccC-cceeeeeeccceEEEEeecCCceeeeeeccccc-
Confidence            34455677778888777777766665544332    222222211 122222 22334444444444   445554443 


Q ss_pred             eeeEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeeeEeeccccccEEEEEECCCCCCCCCCCcceeeeeeec
Q psy12697        396 PVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKST  475 (602)
Q Consensus       396 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~  475 (602)
                      +...+-||-..++.++++||+++++++..|..|++-....-..+..+-                                
T Consensus       143 ~~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~Iesfc--------------------------------  190 (390)
T KOG3914|consen  143 RCEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFC--------------------------------  190 (390)
T ss_pred             CcchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhc--------------------------------
Confidence            345566899999999999999999999999999998877654444442                                


Q ss_pred             cCCccCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeeecc
Q psy12697        476 LGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSF  520 (602)
Q Consensus       476 ~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~  520 (602)
                       -+|+.-|..++.-++ ..|+++|.|++|++||+.+|+++.++..
T Consensus       191 -lGH~eFVS~isl~~~-~~LlS~sGD~tlr~Wd~~sgk~L~t~dl  233 (390)
T KOG3914|consen  191 -LGHKEFVSTISLTDN-YLLLSGSGDKTLRLWDITSGKLLDTCDL  233 (390)
T ss_pred             -cccHhheeeeeeccC-ceeeecCCCCcEEEEecccCCcccccch
Confidence             234444444444433 4489999999999999999999876653

>KOG0309|consensus

Probab=99.07  E-value=1.9e-09  Score=103.87  Aligned_cols=293  Identities=20%  Similarity=0.334  Sum_probs=190.2

Q ss_pred             CcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEeeCCC--CCeEEEEe
Q psy12697        222 ESEVFICAWNPVKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNN--GSFLATGS  299 (602)
Q Consensus       222 ~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~l~~~~  299 (602)
                      .+++..+..+|.|+-++.++.-|. .+-|+...-..     ...+.|.         ..-.+-...|+|.  ..+-++..
T Consensus        24 ~~~~~a~si~p~grdi~lAsr~gl-~i~dld~p~~p-----pr~l~h~---------tpw~vad~qws~h~a~~~wiVst   88 (1081)
T KOG0309|consen   24 DGGFNAVSINPSGRDIVLASRQGL-YIIDLDDPFTP-----PRWLHHI---------TPWQVADVQWSPHPAKPYWIVST   88 (1081)
T ss_pred             cCcccceeeccccchhhhhhhcCe-EEEeccCCCCC-----ceeeecc---------CcchhcceecccCCCCceeEEec
Confidence            566788899999999999888774 45566544321     2222221         1234666777774  33455555


Q ss_pred             CCCeEEEEcCC----CcceeecccccCCeEEEEEccCC-CEEEEEecCCcEEEEeCCCCce-eEEeeeccCCeeeeeccC
Q psy12697        300 YDGYARIWTSD----GSLKSTLGQHKGPIFALKWNKRG-NYILSAGVDKTTIIWDAASGQC-EQQFSFHSAPALDVDWQS  373 (602)
Q Consensus       300 ~dg~i~i~~~~----~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~~wd~~~~~~-~~~~~~~~~~~~~~~~~~  373 (602)
                      ....-.+|++.    ......+.+|...|+.+.|.|.. ..+++++.|-.+..||+++... ...+..-......+.|+-
T Consensus        89 s~qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwny  168 (1081)
T KOG0309|consen   89 SNQKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNY  168 (1081)
T ss_pred             CcchhhhhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecc
Confidence            56666788864    23444567899999999999865 4678899999999999997643 334444445556677765


Q ss_pred             C-CeEEEeeCCCeEEEEEcCCC-ceeeEeccCCCCeEEEEECC-CCCEEEEEECCCeEEEEeCCCCeee-EeeccccccE
Q psy12697        374 N-TSFASCSTDQHIHVCKLHSD-KPVKSFEGHTNEVNAIKWDP-QGLLLASCSDDMTLKIWSLDKDNCV-HDLQAHNKEI  449 (602)
Q Consensus       374 ~-~~~~~~~~~~~i~i~d~~~~-~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~-~~~~~~~~~i  449 (602)
                      . ..+++.+..+.|.+||++.+ .++..+++|...|..++|.. ....+.+.+.||+|+.||....... ......+.++
T Consensus       169 k~p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~pi  248 (1081)
T KOG0309|consen  169 KDPNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPI  248 (1081)
T ss_pred             cCcchhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccccCcc
Confidence            3 55677777888999999876 57889999999999999876 3456888999999999998754221 1112223344


Q ss_pred             EEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCCCeEEEEeCCC-CceeeeecccCCCeeEe
Q psy12697        450 YTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAAS-GQCEQQFSFHSAPALDV  528 (602)
Q Consensus       450 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~v~~~  528 (602)
                      ..-.+.|-+..                       .++-+...++.+---.-+.....|+..+ .+++..|.+|.+.|...
T Consensus       249 w~~r~~Pfg~g-----------------------~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eF  305 (1081)
T KOG0309|consen  249 WRGRYLPFGEG-----------------------YCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEF  305 (1081)
T ss_pred             eeccccccCce-----------------------eEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHH
Confidence            44444443221                       0111111111111111123334455544 36789999999998877


Q ss_pred             eecC--------Cc---eEEEeeCCCcEEEeecCC
Q psy12697        529 DWQS--------NT---SFASCSTDQHIHVCKLHS  552 (602)
Q Consensus       529 ~~s~--------~~---~l~~~~~d~~i~iw~~~~  552 (602)
                      .|-.        |.   .|++-+.|..+++|.+.+
T Consensus       306 lWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~  340 (1081)
T KOG0309|consen  306 LWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDS  340 (1081)
T ss_pred             hhhhcccccCCCCccceeEEEeecCCceEeeeccH
Confidence            6622        22   799999999999999864

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=99.07  E-value=1.6e-07  Score=85.34  Aligned_cols=227  Identities=14%  Similarity=0.044  Sum_probs=140.5

Q ss_pred             CCeEEEEcC-CCcceeecccc--cCCeEEEEEccCCCEEEEEecCCcEEEEeCCCCceeEEeeeccCCeeeeeccCCCeE
Q psy12697        301 DGYARIWTS-DGSLKSTLGQH--KGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTSF  377 (602)
Q Consensus       301 dg~i~i~~~-~~~~~~~~~~~--~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  377 (602)
                      +|.|..||. .|+.+......  .....+. ..+++..+++++.++.+..||..+|+.+..... ...+.......++.+
T Consensus         2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~~~~~~~v   79 (238)
T PF13360_consen    2 DGTLSALDPRTGKELWSYDLGPGIGGPVAT-AVPDGGRVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAPVVDGGRV   79 (238)
T ss_dssp             TSEEEEEETTTTEEEEEEECSSSCSSEEET-EEEETTEEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGEEEETTEE
T ss_pred             CCEEEEEECCCCCEEEEEECCCCCCCccce-EEEeCCEEEEEcCCCEEEEEECCCCCEEEEeec-cccccceeeeccccc
Confidence            577888887 45555544321  1112211 233567788888999999999999999888876 333332234556777


Q ss_pred             EEeeCCCeEEEEEcCCCceeeEe-ccCC---CCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeeeEeeccccccE-EEE
Q psy12697        378 ASCSTDQHIHVCKLHSDKPVKSF-EGHT---NEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHDLQAHNKEI-YTI  452 (602)
Q Consensus       378 ~~~~~~~~i~i~d~~~~~~~~~~-~~~~---~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i-~~~  452 (602)
                      +++..++.++.+|..+++.+... ....   ...........+..++.+..++.|..+|+++|+.+.......... ..+
T Consensus        80 ~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~  159 (238)
T PF13360_consen   80 YVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPI  159 (238)
T ss_dssp             EEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--E
T ss_pred             ccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcce
Confidence            88888899999999999988774 3221   111222233347888999989999999999999988776532210 000


Q ss_pred             EECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeeecccCCCeeEeeecC
Q psy12697        453 KWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQS  532 (602)
Q Consensus       453 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~  532 (602)
                      .                         ....+..-....++ .+..++.++.+.-+|+.+++.+....  ...+..+....
T Consensus       160 ~-------------------------~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~~~w~~~--~~~~~~~~~~~  211 (238)
T PF13360_consen  160 S-------------------------SFSDINGSPVISDG-RVYVSSGDGRVVAVDLATGEKLWSKP--ISGIYSLPSVD  211 (238)
T ss_dssp             E-------------------------EETTEEEEEECCTT-EEEEECCTSSEEEEETTTTEEEEEEC--SS-ECECEECC
T ss_pred             e-------------------------eecccccceEEECC-EEEEEcCCCeEEEEECCCCCEEEEec--CCCccCCceee
Confidence            0                         00111111122244 66666677754444999998664333  23333322333


Q ss_pred             CceEEEeeCCCcEEEeecCCCCcee
Q psy12697        533 NTSFASCSTDQHIHVCKLHSDKPVK  557 (602)
Q Consensus       533 ~~~l~~~~~d~~i~iw~~~~~~~~~  557 (602)
                      ++.++.++.++.|..||+++++.+.
T Consensus       212 ~~~l~~~~~~~~l~~~d~~tG~~~W  236 (238)
T PF13360_consen  212 GGTLYVTSSDGRLYALDLKTGKVVW  236 (238)
T ss_dssp             CTEEEEEETTTEEEEEETTTTEEEE
T ss_pred             CCEEEEEeCCCEEEEEECCCCCEEe
Confidence            3377777799999999998887653

...

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.06  E-value=1e-08  Score=88.59  Aligned_cols=266  Identities=13%  Similarity=0.198  Sum_probs=168.5

Q ss_pred             CCceEEEEECCCCCeEEEeeCCceEEEEecCCce-----eEEEeeccCceEEEEeCCCCCCCCCCCCccccccccccCCc
Q psy12697        140 TEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQ-----LVHSYKGTGGIFEVCWNSRGTPPNPPESMEVDASIEIPQSK  214 (602)
Q Consensus       140 ~~~V~~~~~s~d~~~l~s~~~d~~v~iwd~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  214 (602)
                      .+.|+++.|...|.||++|...|.|.++.-+...     ....|+.+..-                       +..-   
T Consensus        26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~E-----------------------FDYL---   79 (460)
T COG5170          26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELE-----------------------FDYL---   79 (460)
T ss_pred             cceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccc-----------------------hhhh---
Confidence            4678999999999999999999999999765432     11111111000                       0000   


Q ss_pred             ceEeeCCCcceEEEEEcCCC--CEEEEeeCCCcEEEEeCCCCCCCCCc----------------------cceEEEEE--
Q psy12697        215 ATKLIGHESEVFICAWNPVK--DFLASGSGDSTARIWDMTDSTKKDPK----------------------ELQIVLRH--  268 (602)
Q Consensus       215 ~~~l~~h~~~v~~~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~----------------------~~~~~~~~--  268 (602)
                       .. ..-...|..+.|..++  ..++..+.|.+|++|.+.........                      ..+....+  
T Consensus        80 -kS-leieEKin~I~w~~~t~r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~  157 (460)
T COG5170          80 -KS-LEIEEKINAIEWFDDTGRNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDE  157 (460)
T ss_pred             -hh-ccHHHHhhheeeecCCCcceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccce
Confidence             00 0113457778886654  56777789999999998655221100                      00000000  


Q ss_pred             --E-ecCCCcccCCCCceeEEeeCCCCCeEEEEeCCCeEEEEcCCC--c--ceeecccc-----cCCeEEEEEccCC-CE
Q psy12697        269 --C-ISKGGTEVPSNKDVTSLDWNNNGSFLATGSYDGYARIWTSDG--S--LKSTLGQH-----KGPIFALKWNKRG-NY  335 (602)
Q Consensus       269 --~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~--~--~~~~~~~~-----~~~i~~~~~~~~~-~~  335 (602)
                        + .........|...|.++.|+.|...++++ .|=.|.+|+++-  .  .+..+..|     ..-|++..|+|.. +.
T Consensus       158 iiaa~p~rvyaNaH~yhiNSiS~NsD~et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~  236 (460)
T COG5170         158 IIAAKPCRVYANAHPYHINSISFNSDKETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNV  236 (460)
T ss_pred             EEEeccceeccccceeEeeeeeecCchheeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcce
Confidence              0 01111224566779999999998877765 466799998651  1  12223333     3458888999854 45


Q ss_pred             EEEEecCCcEEEEeCCCCcee------EE----------eeeccCCeeeeeccCCCeEEEeeCCCeEEEEEcCCC-ceee
Q psy12697        336 ILSAGVDKTTIIWDAASGQCE------QQ----------FSFHSAPALDVDWQSNTSFASCSTDQHIHVCKLHSD-KPVK  398 (602)
Q Consensus       336 l~~~~~dg~i~~wd~~~~~~~------~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~-~~~~  398 (602)
                      +.-.+..|.|++-|++....-      ..          +..-...+.++.|+++++++..-.--++.+||++.. .++.
T Consensus       237 fmYSsSkG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdyltvkiwDvnm~k~pik  316 (460)
T COG5170         237 FMYSSSKGEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDYLTVKIWDVNMAKNPIK  316 (460)
T ss_pred             EEEecCCCcEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEeccceEEEEecccccCCce
Confidence            566778899999999843211      00          111234577889999999998888899999999864 4677


Q ss_pred             EeccCC------------CCe---EEEEECCCCCEEEEEECCCeEEEEeCC
Q psy12697        399 SFEGHT------------NEV---NAIKWDPQGLLLASCSDDMTLKIWSLD  434 (602)
Q Consensus       399 ~~~~~~------------~~i---~~~~~~~~~~~l~~~~~dg~i~iwd~~  434 (602)
                      ++.-|.            +.|   ..+.|+.|.+.+.+|+..+..-+|-..
T Consensus       317 Ti~~h~~l~~~l~d~YEnDaifdkFeisfSgd~~~v~sgsy~NNfgiyp~~  367 (460)
T COG5170         317 TIPMHCDLMDELNDVYENDAIFDKFEISFSGDDKHVLSGSYSNNFGIYPTD  367 (460)
T ss_pred             eechHHHHHHHHHhhhhccceeeeEEEEecCCcccccccccccceeeeccc
Confidence            765442            223   247788899999999998888888644

>PRK04043 tolB translocation protein TolB; Provisional

Probab=99.05  E-value=3.6e-07  Score=89.01  Aligned_cols=208  Identities=9%  Similarity=0.030  Sum_probs=127.4

Q ss_pred             CeEEEEcCCCcceeecccccCCeEEEEEccCCCE-EEEEec---CCcEEEEeCCCCceeEEeeeccCCeeeeeccCCCe-
Q psy12697        302 GYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNY-ILSAGV---DKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTS-  376 (602)
Q Consensus       302 g~i~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-l~~~~~---dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-  376 (602)
                      ..|.+-|.+|.....+.... ......|+|||+. ++..+.   +..|.++|+.+++...... .........|+|++. 
T Consensus       169 ~~l~~~d~dg~~~~~~~~~~-~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~SPDG~~  246 (419)
T PRK04043        169 SNIVLADYTLTYQKVIVKGG-LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGMLVVSDVSKDGSK  246 (419)
T ss_pred             ceEEEECCCCCceeEEccCC-CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcEEeeEECCCCCE
Confidence            45666666666555444443 7789999999985 554433   3568889998887655433 444455678999874 


Q ss_pred             EEE-eeC--CCeEEEEEcCCCceeeEeccCCCCeEEEEECCCCCEEEEEECC-C--eEEEEeCCCCeeeEeeccccccEE
Q psy12697        377 FAS-CST--DQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDD-M--TLKIWSLDKDNCVHDLQAHNKEIY  450 (602)
Q Consensus       377 ~~~-~~~--~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-g--~i~iwd~~~~~~~~~~~~~~~~i~  450 (602)
                      ++. .+.  +..|+++|+.+++. ..+..+........|+|||+.|+..+.. +  .|.+.|+.+++..+....      
T Consensus       247 la~~~~~~g~~~Iy~~dl~~g~~-~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~------  319 (419)
T PRK04043        247 LLLTMAPKGQPDIYLYDTNTKTL-TQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFH------  319 (419)
T ss_pred             EEEEEccCCCcEEEEEECCCCcE-EEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccC------
Confidence            333 222  35788889887764 3344343333456799999988877643 2  577777766543221110      


Q ss_pred             EEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCC---------CeEEEEeCCCCceeeeeccc
Q psy12697        451 TIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVD---------KTTIIWDAASGQCEQQFSFH  521 (602)
Q Consensus       451 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d---------g~i~iwd~~~~~~~~~~~~~  521 (602)
                                                 +..    ...|||||++|+.....         ..|.+.|+.++.... +...
T Consensus       320 ---------------------------g~~----~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~-LT~~  367 (419)
T PRK04043        320 ---------------------------GKN----NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRR-LTAN  367 (419)
T ss_pred             ---------------------------CCc----CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEE-CCCC
Confidence                                       000    12678888888766543         368888998886543 3322


Q ss_pred             CCCeeEeeecCCc-eEEEeeCC-C--cEEEeecC
Q psy12697        522 SAPALDVDWQSNT-SFASCSTD-Q--HIHVCKLH  551 (602)
Q Consensus       522 ~~~v~~~~~s~~~-~l~~~~~d-~--~i~iw~~~  551 (602)
                       .......|+||| .++....+ +  .+.+.++.
T Consensus       368 -~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~  400 (419)
T PRK04043        368 -GVNQFPRFSSDGGSIMFIKYLGNQSALGIIRLN  400 (419)
T ss_pred             -CCcCCeEECCCCCEEEEEEccCCcEEEEEEecC
Confidence             233468899999 55554432 3  35555553

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=99.05  E-value=1.1e-07  Score=82.17  Aligned_cols=192  Identities=16%  Similarity=0.156  Sum_probs=113.6

Q ss_pred             eEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEeeCCCC------CeEEEE
Q psy12697        225 VFICAWNPVKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNG------SFLATG  298 (602)
Q Consensus       225 v~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~------~~l~~~  298 (602)
                      =..++|+||+..||.+...|+|+++|+.....-.. ...    ..     ....-...|..+.|.+..      ..|++-
T Consensus        46 WRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf~I-~p~----~~-----~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi  115 (282)
T PF15492_consen   46 WRKLAWSPDCTLLAYAESTGTIRVFDLMGSELFVI-PPA----MS-----FPGDLSDAIAGLIFLEYKKSAQWSYELLVI  115 (282)
T ss_pred             heEEEECCCCcEEEEEcCCCeEEEEecccceeEEc-Ccc----cc-----cCCccccceeeeEeeccccccccceeEEEE
Confidence            45689999999999999999999999975432110 000    00     001123556667665421      246666


Q ss_pred             eCCCeEEEEcCC------Ccceee--c-ccccCCeEEEEEccCCCEEEEEecCCc-----------EEEEeCCCCceeEE
Q psy12697        299 SYDGYARIWTSD------GSLKST--L-GQHKGPIFALKWNKRGNYILSAGVDKT-----------TIIWDAASGQCEQQ  358 (602)
Q Consensus       299 ~~dg~i~i~~~~------~~~~~~--~-~~~~~~i~~~~~~~~~~~l~~~~~dg~-----------i~~wd~~~~~~~~~  358 (602)
                      ...|.++-|-+.      ......  + ..+...|.++.++|..+.|+.|+....           +..|.+-++.+   
T Consensus       116 ~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~P---  192 (282)
T PF15492_consen  116 NYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSP---  192 (282)
T ss_pred             eccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcCCCC---
Confidence            677777766542      111122  2 234678999999999998887764322           22332222211   


Q ss_pred             eeeccCCeeeeeccCCCeEEEeeCCCe------EEEEEcCCCceeeEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEe
Q psy12697        359 FSFHSAPALDVDWQSNTSFASCSTDQH------IHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWS  432 (602)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~------i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd  432 (602)
                                     --..+....++.      ..++.+-+.+.........+.|..|..||||+.||+...+|.|.+|+
T Consensus       193 ---------------yyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~  257 (282)
T PF15492_consen  193 ---------------YYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWE  257 (282)
T ss_pred             ---------------cEEEccccCccccccccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEe
Confidence                           111112111111      12222222222111123456799999999999999999999999999


Q ss_pred             CCCCeeeEeecc
Q psy12697        433 LDKDNCVHDLQA  444 (602)
Q Consensus       433 ~~~~~~~~~~~~  444 (602)
                      +.+-+.......
T Consensus       258 iPsL~~~~~W~~  269 (282)
T PF15492_consen  258 IPSLRLQRSWKQ  269 (282)
T ss_pred             cCcchhhcccch
Confidence            998776665543

>KOG3914|consensus

Probab=99.03  E-value=1.2e-08  Score=91.59  Aligned_cols=164  Identities=12%  Similarity=0.162  Sum_probs=118.2

Q ss_pred             eEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEeeCCCCCeEEEEeCC---
Q psy12697        225 VFICAWNPVKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFLATGSYD---  301 (602)
Q Consensus       225 v~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---  301 (602)
                      ...+..++.+++||.+..+....++++......    .......+.         ...-+++.|..+.....++..-   
T Consensus        65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~----~kl~~~~~v---------~~~~~ai~~~~~~~sv~v~dkagD~  131 (390)
T KOG3914|consen   65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPKG----AKLLDVSCV---------PKRPTAISFIREDTSVLVADKAGDV  131 (390)
T ss_pred             ccccccCCCceEEEEEeCCCceEEEEEecCCCc----ceeeeEeec---------ccCcceeeeeeccceEEEEeecCCc
Confidence            445567788889998888888778887665431    111111221         2334455555555555554444   


Q ss_pred             CeEEEEcCCCcceeecccccCCeEEEEEccCCCEEEEEecCCcEEEEeCCCCceeEEee-eccCCeeeeeccCCCeEEEe
Q psy12697        302 GYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFS-FHSAPALDVDWQSNTSFASC  380 (602)
Q Consensus       302 g~i~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~  380 (602)
                      ..+.+|.........+-+|-+.+..++|+||+++|+++..|..|++-....--.+..+. +|..-|..++..++..++++
T Consensus       132 ~~~di~s~~~~~~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~~~LlS~  211 (390)
T KOG3914|consen  132 YSFDILSADSGRCEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDNYLLLSG  211 (390)
T ss_pred             eeeeeecccccCcchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccCceeeec
Confidence            44555555434445566899999999999999999999999999998777655555554 48889999999999999999


Q ss_pred             eCCCeEEEEEcCCCceeeEec
Q psy12697        381 STDQHIHVCKLHSDKPVKSFE  401 (602)
Q Consensus       381 ~~~~~i~i~d~~~~~~~~~~~  401 (602)
                      +.|+++++||+.+++.+.++.
T Consensus       212 sGD~tlr~Wd~~sgk~L~t~d  232 (390)
T KOG3914|consen  212 SGDKTLRLWDITSGKLLDTCD  232 (390)
T ss_pred             CCCCcEEEEecccCCcccccc
Confidence            999999999999998876554

>PRK04043 tolB translocation protein TolB; Provisional

Probab=99.01  E-value=2.8e-07  Score=89.74  Aligned_cols=152  Identities=14%  Similarity=0.115  Sum_probs=98.6

Q ss_pred             ceeEEeeCCCCCe-EEEEeCC---CeEEEEcCCCcceeecccccCCeEEEEEccCCCEEEEE-ecC--CcEEEEeCCCCc
Q psy12697        282 DVTSLDWNNNGSF-LATGSYD---GYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSA-GVD--KTTIIWDAASGQ  354 (602)
Q Consensus       282 ~i~~~~~~~~~~~-l~~~~~d---g~i~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~d--g~i~~wd~~~~~  354 (602)
                      ......|+|||+. ++..+.+   ..|.++|+.+.....+....+......|+|||+.++.. +.+  ..|.++|+.+++
T Consensus       189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~  268 (419)
T PRK04043        189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKT  268 (419)
T ss_pred             CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCc
Confidence            5678899999985 6544443   46888898766655555566667778899999877643 333  467888888776


Q ss_pred             eeEEeeeccCCeeeeeccCCCe-EEEeeC-CC--eEEEEEcCCCceeeEeccCCCCeEEEEECCCCCEEEEEECC-----
Q psy12697        355 CEQQFSFHSAPALDVDWQSNTS-FASCST-DQ--HIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDD-----  425 (602)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~--~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----  425 (602)
                      .. .+...........|+|++. ++..+. .+  .|++.|+.+++..+.... ..  ....|+|+|+.|+..+..     
T Consensus       269 ~~-~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~-g~--~~~~~SPDG~~Ia~~~~~~~~~~  344 (419)
T PRK04043        269 LT-QITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFH-GK--NNSSVSTYKNYIVYSSRETNNEF  344 (419)
T ss_pred             EE-EcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccC-CC--cCceECCCCCEEEEEEcCCCccc
Confidence            43 3333333334567999875 444432 22  688889887765333221 11  124899999998877654     


Q ss_pred             ----CeEEEEeCCCCe
Q psy12697        426 ----MTLKIWSLDKDN  437 (602)
Q Consensus       426 ----g~i~iwd~~~~~  437 (602)
                          ..|.+.|+.++.
T Consensus       345 ~~~~~~I~v~d~~~g~  360 (419)
T PRK04043        345 GKNTFNLYLISTNSDY  360 (419)
T ss_pred             CCCCcEEEEEECCCCC
Confidence                256667766554

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.99  E-value=1.3e-08  Score=87.97  Aligned_cols=253  Identities=17%  Similarity=0.324  Sum_probs=163.7

Q ss_pred             CCceeEEeeCCCCCeEEEEeCCCeEEEEcCCC------cceeeccccc------------CCeEEEEEccCC--CEEEEE
Q psy12697        280 NKDVTSLDWNNNGSFLATGSYDGYARIWTSDG------SLKSTLGQHK------------GPIFALKWNKRG--NYILSA  339 (602)
Q Consensus       280 ~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~------~~~~~~~~~~------------~~i~~~~~~~~~--~~l~~~  339 (602)
                      ...|+++.|...|.++++|...|.|.+|..+.      +....++.|.            ..|..+.|..++  ..++..
T Consensus        26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLls  105 (460)
T COG5170          26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLS  105 (460)
T ss_pred             cceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEe
Confidence            46799999999999999999999999997542      1222344443            357788887654  457778


Q ss_pred             ecCCcEEEEeCCCCcee---------------------------EE---------------e-eeccCCeeeeeccCCCe
Q psy12697        340 GVDKTTIIWDAASGQCE---------------------------QQ---------------F-SFHSAPALDVDWQSNTS  376 (602)
Q Consensus       340 ~~dg~i~~wd~~~~~~~---------------------------~~---------------~-~~~~~~~~~~~~~~~~~  376 (602)
                      +.|.+|++|.+......                           ..               + ..|...+.++.+..+..
T Consensus       106 tNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~e  185 (460)
T COG5170         106 TNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDKE  185 (460)
T ss_pred             cCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCchh
Confidence            88999999987543100                           00               0 12333456677777777


Q ss_pred             EEEeeCCCeEEEEEcCCCc---eeeEeccCC-----CCeEEEEECCC-CCEEEEEECCCeEEEEeCCCCeeeEeeccccc
Q psy12697        377 FASCSTDQHIHVCKLHSDK---PVKSFEGHT-----NEVNAIKWDPQ-GLLLASCSDDMTLKIWSLDKDNCVHDLQAHNK  447 (602)
Q Consensus       377 ~~~~~~~~~i~i~d~~~~~---~~~~~~~~~-----~~i~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~  447 (602)
                      .+....+=.|.+|++.-..   .+..++.|.     .-|++..|+|. ...+.-.+..|.|++-|++.......    ..
T Consensus       186 t~lSaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn----~~  261 (460)
T COG5170         186 TLLSADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDN----SK  261 (460)
T ss_pred             eeeeccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccC----ch
Confidence            7778888899999986432   233344443     34888999994 45566677789999999984321100    00


Q ss_pred             cEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCC-ceeeeecccCC---
Q psy12697        448 EIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASG-QCEQQFSFHSA---  523 (602)
Q Consensus       448 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~---  523 (602)
                      ........+..              ..-+.+-...|..+.|+++|+|+++-+. -+|+|||+... .++.++..|..   
T Consensus       262 klfe~~~D~v~--------------~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi~~h~~l~~  326 (460)
T COG5170         262 KLFELTIDGVD--------------VDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTIPMHCDLMD  326 (460)
T ss_pred             hhhhhccCccc--------------chhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCceeechHHHHHH
Confidence            00000000000              0012234467889999999999998754 56999998753 56666654432   


Q ss_pred             ---------Ce---eEeeecCCc-eEEEeeCCCcEEEeecC
Q psy12697        524 ---------PA---LDVDWQSNT-SFASCSTDQHIHVCKLH  551 (602)
Q Consensus       524 ---------~v---~~~~~s~~~-~l~~~~~d~~i~iw~~~  551 (602)
                               .|   ..+.||.|. .+++|+..+..-+|-..
T Consensus       327 ~l~d~YEnDaifdkFeisfSgd~~~v~sgsy~NNfgiyp~~  367 (460)
T COG5170         327 ELNDVYENDAIFDKFEISFSGDDKHVLSGSYSNNFGIYPTD  367 (460)
T ss_pred             HHHhhhhccceeeeEEEEecCCcccccccccccceeeeccc
Confidence                     23   346788888 88999888888888744

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.98  E-value=1.8e-09  Score=65.78  Aligned_cols=39  Identities=46%  Similarity=0.973  Sum_probs=37.4

Q ss_pred             ceeeeeeeccCCceEEEEECCCCCeEEEeeCCceEEEEe
Q psy12697        130 GECLNTLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWS  168 (602)
Q Consensus       130 ~~~~~~l~~h~~~V~~~~~s~d~~~l~s~~~d~~v~iwd  168 (602)
                      +++++++.+|.+.|++|+|+|++++|++++.|+.|++||
T Consensus         1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            478899999999999999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG0309|consensus

Probab=98.98  E-value=4.1e-09  Score=101.62  Aligned_cols=280  Identities=18%  Similarity=0.256  Sum_probs=175.4

Q ss_pred             CCceEEEEECCCCCeEEEeeCCceEEEEecCC-ceeEEEeecc--CceEEEEeCCCCCCCCCCCCccc--cccccc----
Q psy12697        140 TEPVYSVAFSPDGKFLASGSFDKCVHIWSART-GQLVHSYKGT--GGIFEVCWNSRGTPPNPPESMEV--DASIEI----  210 (602)
Q Consensus       140 ~~~V~~~~~s~d~~~l~s~~~d~~v~iwd~~~-~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~----  210 (602)
                      .+++.++..+|.|+-+|.++.-|-..+ |+.. +...+-+...  -.+-...|++......-..+...  ...+.+    
T Consensus        24 ~~~~~a~si~p~grdi~lAsr~gl~i~-dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss  102 (1081)
T KOG0309|consen   24 DGGFNAVSINPSGRDIVLASRQGLYII-DLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSS  102 (1081)
T ss_pred             cCcccceeeccccchhhhhhhcCeEEE-eccCCCCCceeeeccCcchhcceecccCCCCceeEEecCcchhhhhhhhcCC
Confidence            467788999999999999988775443 4432 2222222211  11234445544332211111111  111111    


Q ss_pred             cCCcceEeeCCCcceEEEEEcCCC-CEEEEeeCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEeeC
Q psy12697        211 PQSKATKLIGHESEVFICAWNPVK-DFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWN  289 (602)
Q Consensus       211 ~~~~~~~l~~h~~~v~~~~~~~~~-~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  289 (602)
                      .......+.||...|+.+.|+|.. ..+++++-|..+..||+.+.....    ...           ..-....+.++|+
T Consensus       103 ~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~----ys~-----------~~w~s~asqVkwn  167 (1081)
T KOG0309|consen  103 SNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPF----YST-----------SSWRSAASQVKWN  167 (1081)
T ss_pred             ccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcce----eee-----------ecccccCceeeec
Confidence            122235677999999999999977 688999999999999998764321    000           0113456778898


Q ss_pred             CCCCeEEEEeCCCeEEEEcCC--CcceeecccccCCeEEEEEccC-CCEEEEEecCCcEEEEeCCCCceeEEe-eeccCC
Q psy12697        290 NNGSFLATGSYDGYARIWTSD--GSLKSTLGQHKGPIFALKWNKR-GNYILSAGVDKTTIIWDAASGQCEQQF-SFHSAP  365 (602)
Q Consensus       290 ~~~~~l~~~~~dg~i~i~~~~--~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~i~~wd~~~~~~~~~~-~~~~~~  365 (602)
                      -....+.+.+....|.+||.+  +.....+++|...|..+.|..- ...+.+.+.||+|+.||.......... .....+
T Consensus       168 yk~p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~p  247 (1081)
T KOG0309|consen  168 YKDPNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFP  247 (1081)
T ss_pred             ccCcchhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccccCc
Confidence            866666667777889999976  5667778889899999988752 345788999999999998755333222 223344


Q ss_pred             eeeeeccCC--CeEEEeeC-CCeEEE---------EEcCC-CceeeEeccCCCCeEEEEECCCC----------CEEEEE
Q psy12697        366 ALDVDWQSN--TSFASCST-DQHIHV---------CKLHS-DKPVKSFEGHTNEVNAIKWDPQG----------LLLASC  422 (602)
Q Consensus       366 ~~~~~~~~~--~~~~~~~~-~~~i~i---------~d~~~-~~~~~~~~~~~~~i~~~~~~~~~----------~~l~~~  422 (602)
                      +....+.|-  +.++.-.. +..+.+         |+..+ .+++..+.||.+.|....|-..+          -.|++-
T Consensus       248 iw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTW  327 (1081)
T KOG0309|consen  248 IWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTW  327 (1081)
T ss_pred             ceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEe
Confidence            544444442  22221111 113333         33332 36899999999988777665422          369999


Q ss_pred             ECCCeEEEEeCCC
Q psy12697        423 SDDMTLKIWSLDK  435 (602)
Q Consensus       423 ~~dg~i~iwd~~~  435 (602)
                      +.|..+++|-+.+
T Consensus       328 SkD~~lrlWpI~~  340 (1081)
T KOG0309|consen  328 SKDQTLRLWPIDS  340 (1081)
T ss_pred             ecCCceEeeeccH
Confidence            9999999998764

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.97  E-value=1.7e-06  Score=78.76  Aligned_cols=215  Identities=13%  Similarity=0.144  Sum_probs=141.6

Q ss_pred             EEeeCC-CCCeEEEEeCCCeEEEEcCCCcceeecccccCCeEEEEEc-cCCCEEEEEecCCcEEEEeCCCCceeEEeee-
Q psy12697        285 SLDWNN-NGSFLATGSYDGYARIWTSDGSLKSTLGQHKGPIFALKWN-KRGNYILSAGVDKTTIIWDAASGQCEQQFSF-  361 (602)
Q Consensus       285 ~~~~~~-~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~-  361 (602)
                      +..|.+ ++.++++-...+.|..|+..+.....+....  ...+.+. +++ .|+.+...+ +.++|..+++....... 
T Consensus         4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~~~~~--~~G~~~~~~~g-~l~v~~~~~-~~~~d~~~g~~~~~~~~~   79 (246)
T PF08450_consen    4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVIDLPG--PNGMAFDRPDG-RLYVADSGG-IAVVDPDTGKVTVLADLP   79 (246)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEESSS--EEEEEEECTTS-EEEEEETTC-EEEEETTTTEEEEEEEEE
T ss_pred             ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEEEecCC--CceEEEEccCC-EEEEEEcCc-eEEEecCCCcEEEEeecc
Confidence            567887 6777777777899999998877665544333  6777777 564 555555544 56669998866555544 


Q ss_pred             ----ccCCeeeeeccCCCeEEEeeCC---------CeEEEEEcCCCceeeEeccCCCCeEEEEECCCCCEEE-EEECCCe
Q psy12697        362 ----HSAPALDVDWQSNTSFASCSTD---------QHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLA-SCSDDMT  427 (602)
Q Consensus       362 ----~~~~~~~~~~~~~~~~~~~~~~---------~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~dg~  427 (602)
                          ......++++.+++.+.++...         |.++.++.. ++. ..+...-...+.++|+|+++.|+ +-+..+.
T Consensus        80 ~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~-~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~~  157 (246)
T PF08450_consen   80 DGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKV-TVVADGLGFPNGIAFSPDGKTLYVADSFNGR  157 (246)
T ss_dssp             TTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEE-EEEEEEESSEEEEEEETTSSEEEEEETTTTE
T ss_pred             CCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeE-EEEecCcccccceEECCcchheeecccccce
Confidence                2345778889998877666532         457777777 443 33333455678999999999776 4556788


Q ss_pred             EEEEeCCCCee-eEeeccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCCCeEEE
Q psy12697        428 LKIWSLDKDNC-VHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTII  506 (602)
Q Consensus       428 i~iwd~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~i  506 (602)
                      |..+++..... +....     +. .                      .+....+..-.+++..+|++.++....+.|.+
T Consensus       158 i~~~~~~~~~~~~~~~~-----~~-~----------------------~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~  209 (246)
T PF08450_consen  158 IWRFDLDADGGELSNRR-----VF-I----------------------DFPGGPGYPDGLAVDSDGNLWVADWGGGRIVV  209 (246)
T ss_dssp             EEEEEEETTTCCEEEEE-----EE-E----------------------E-SSSSCEEEEEEEBTTS-EEEEEETTTEEEE
T ss_pred             eEEEeccccccceeeee-----eE-E----------------------EcCCCCcCCCcceEcCCCCEEEEEcCCCEEEE
Confidence            88888853221 11000     00 0                      00111133567888889998888888999999


Q ss_pred             EeCCCCceeeeecccCCCeeEeeec-CCc
Q psy12697        507 WDAASGQCEQQFSFHSAPALDVDWQ-SNT  534 (602)
Q Consensus       507 wd~~~~~~~~~~~~~~~~v~~~~~s-~~~  534 (602)
                      +|.+ |+.+..+......+++++|. ++.
T Consensus       210 ~~p~-G~~~~~i~~p~~~~t~~~fgg~~~  237 (246)
T PF08450_consen  210 FDPD-GKLLREIELPVPRPTNCAFGGPDG  237 (246)
T ss_dssp             EETT-SCEEEEEE-SSSSEEEEEEESTTS
T ss_pred             ECCC-ccEEEEEcCCCCCEEEEEEECCCC
Confidence            9987 99888888776689999994 565

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>KOG4649|consensus

Probab=98.97  E-value=1.8e-06  Score=73.31  Aligned_cols=142  Identities=13%  Similarity=0.066  Sum_probs=91.4

Q ss_pred             CCEEEEeeCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEeeCCCCCeEEEEeCCCeEEEEcCC-Cc
Q psy12697        234 KDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFLATGSYDGYARIWTSD-GS  312 (602)
Q Consensus       234 ~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~-~~  312 (602)
                      ..+++.|+..+.+.--|..++.......+.                 .+|.+-+.- -|++++.|+..|.+++.+.+ |.
T Consensus        23 kT~v~igSHs~~~~avd~~sG~~~We~ilg-----------------~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs   84 (354)
T KOG4649|consen   23 KTLVVIGSHSGIVIAVDPQSGNLIWEAILG-----------------VRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGS   84 (354)
T ss_pred             ceEEEEecCCceEEEecCCCCcEEeehhhC-----------------ceeeeeeEE-ECCEEEEEEccCcEEEEEecchh
Confidence            356777888888888888777654332222                 222222222 46789999999999999976 44


Q ss_pred             ceeecccccCCeEEEEEccCCCEEEEEecCCcEEEEeCCCCceeEEeeeccCCeeeeeccC-CCeEEEeeCCCeEEEEEc
Q psy12697        313 LKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQS-NTSFASCSTDQHIHVCKL  391 (602)
Q Consensus       313 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~i~d~  391 (602)
                      ....+.....-=......+++..+..++.|++....|.++..++...+.......+-+..+ ++.+.++...|.+.--..
T Consensus        85 ~~w~f~~~~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~sly~a~t~G~vlavt~  164 (354)
T KOG4649|consen   85 QIWNFVILETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSLYAAITAGAVLAVTK  164 (354)
T ss_pred             heeeeeehhhhccceEEcCCCceEEEecCCCcEEEecccccceEEecccCCceeccceecCCCceEEEEeccceEEEEcc
Confidence            5444433222222344567899999999999999999999998887665444433334444 455666666666554444


Q ss_pred             CC
Q psy12697        392 HS  393 (602)
Q Consensus       392 ~~  393 (602)
                      +.
T Consensus       165 ~~  166 (354)
T KOG4649|consen  165 NP  166 (354)
T ss_pred             CC
Confidence            43

>KOG0882|consensus

Probab=98.92  E-value=3.3e-08  Score=90.03  Aligned_cols=260  Identities=15%  Similarity=0.151  Sum_probs=175.9

Q ss_pred             CCceeEEeeCCCCCeEEEEeCCCeEEEEcCCC----cceeecccccCCeEEEEEccCCCEEEEEec-CCcEEEEeCCCCc
Q psy12697        280 NKDVTSLDWNNNGSFLATGSYDGYARIWTSDG----SLKSTLGQHKGPIFALKWNKRGNYILSAGV-DKTTIIWDAASGQ  354 (602)
Q Consensus       280 ~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~----~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~i~~wd~~~~~  354 (602)
                      ...|+.+. ..-.+++.+++.||.++.|....    +.+..+..|-..|.+++.+.++..+.+.+. |..++++|+.+..
T Consensus         9 rd~i~hv~-~tka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~D   87 (558)
T KOG0882|consen    9 RDVITHVF-PTKAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFD   87 (558)
T ss_pred             cceeeeEe-eehhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeeccc
Confidence            34444443 33456899999999999998664    344455678889999999999998889777 9999999998766


Q ss_pred             eeEEeeeccCCe-eeeeccCC---CeEEEe-eCCCeEEEEEcCCCc--eeeEeccCCCCeEEEEECCCCCEEEEEECCCe
Q psy12697        355 CEQQFSFHSAPA-LDVDWQSN---TSFASC-STDQHIHVCKLHSDK--PVKSFEGHTNEVNAIKWDPQGLLLASCSDDMT  427 (602)
Q Consensus       355 ~~~~~~~~~~~~-~~~~~~~~---~~~~~~-~~~~~i~i~d~~~~~--~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~  427 (602)
                      ...-+....-+- .+...+++   ..+++. ..++.+.++|-....  ....-.-|..+|..+.+.|-+..+++....|.
T Consensus        88 minmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gm  167 (558)
T KOG0882|consen   88 MINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGM  167 (558)
T ss_pred             hhhhcccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccccce
Confidence            554333222221 11222333   134433 357889999976543  34455568999999999999999999999999


Q ss_pred             EEEEeCCCCeeeEeeccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCCCeEEEE
Q psy12697        428 LKIWSLDKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIW  507 (602)
Q Consensus       428 i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iw  507 (602)
                      |.-|....  .   ++-..   ..+.|.+...           .........++...++.|+|+|..+.+-+.|..|+++
T Consensus       168 VEyWs~e~--~---~qfPr---~~l~~~~K~e-----------TdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F  228 (558)
T KOG0882|consen  168 VEYWSAEG--P---FQFPR---TNLNFELKHE-----------TDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGF  228 (558)
T ss_pred             eEeecCCC--c---ccCcc---cccccccccc-----------chhhcccccccCccceEEccccCcccccCcccEEEEE
Confidence            99998763  1   11000   0111111100           0011122345677899999999999999999999999


Q ss_pred             eCCCCceeeeecc--------------------------------cCC-CeeEeeecCCc-eEEEeeCCCcEEEeecCCC
Q psy12697        508 DAASGQCEQQFSF--------------------------------HSA-PALDVDWQSNT-SFASCSTDQHIHVCKLHSD  553 (602)
Q Consensus       508 d~~~~~~~~~~~~--------------------------------~~~-~v~~~~~s~~~-~l~~~~~d~~i~iw~~~~~  553 (602)
                      +..+|+.++.+..                                |.. .-+.++|...+ +|+.++.=| |+|.++.++
T Consensus       229 ~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g-ikvin~~tn  307 (558)
T KOG0882|consen  229 VFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG-IKVINLDTN  307 (558)
T ss_pred             EeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-EEEEEeecC
Confidence            9999987655431                                211 34567787777 777766554 899999888


Q ss_pred             Cceeeee
Q psy12697        554 KPVKSFE  560 (602)
Q Consensus       554 ~~~~~~~  560 (602)
                      ..++.+-
T Consensus       308 ~v~ri~g  314 (558)
T KOG0882|consen  308 TVVRILG  314 (558)
T ss_pred             eEEEEec
Confidence            7776654

>KOG4714|consensus

Probab=98.91  E-value=5.5e-08  Score=82.15  Aligned_cols=207  Identities=14%  Similarity=0.156  Sum_probs=121.0

Q ss_pred             CCCCeEEEEeCCCeEEEEcCCCcc--eeecccccCCeEEEEEccCCCEEEEEe-----cCCcEEEEeCCCCceeEEeeec
Q psy12697        290 NNGSFLATGSYDGYARIWTSDGSL--KSTLGQHKGPIFALKWNKRGNYILSAG-----VDKTTIIWDAASGQCEQQFSFH  362 (602)
Q Consensus       290 ~~~~~l~~~~~dg~i~i~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~l~~~~-----~dg~i~~wd~~~~~~~~~~~~~  362 (602)
                      -.++.++++..||.+.+++.+...  ..........-.+.+....++.+.++.     .-+..+.|+++..+....-...
T Consensus        99 ~~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~  178 (319)
T KOG4714|consen   99 MTDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKKA  178 (319)
T ss_pred             ccCCceEecCCCceEEEEechHHHhhhhhcccccccccccceeecccEEecCCcceEeeccceeeecccccccccccccc
Confidence            346679999999999999876411  111111111122333334455555432     2234566666544333322222


Q ss_pred             cCCeeeeeccCC--CeEEEeeCCCeEEEEEcCCCc-eeeEeccCCCCeEEEEECC-CCCEEEEEECCCeEEEEeCCCCee
Q psy12697        363 SAPALDVDWQSN--TSFASCSTDQHIHVCKLHSDK-PVKSFEGHTNEVNAIKWDP-QGLLLASCSDDMTLKIWSLDKDNC  438 (602)
Q Consensus       363 ~~~~~~~~~~~~--~~~~~~~~~~~i~i~d~~~~~-~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~  438 (602)
                      ...+.+++-.|.  ..+++|+.+|.+.+||.++.. ++..+..|..+|..+-|+| ++..|+++++||.+--||..+ ..
T Consensus       179 ~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~-~~  257 (319)
T KOG4714|consen  179 LDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST-TF  257 (319)
T ss_pred             cccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC-ce
Confidence            334666766664  568899999999999999874 5566788999999999999 678999999999999999764 22


Q ss_pred             eEeeccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCCCeEEEEe
Q psy12697        439 VHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWD  508 (602)
Q Consensus       439 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd  508 (602)
                      +. ... ...+.+       ..+..........+...+......|+++  .--|..|++|+.-+.|++++
T Consensus       258 l~-i~~-~~s~~s-------~WLsgD~v~s~i~i~~ll~~~~~Sinsf--DV~g~~lVcgtd~eaIyl~~  316 (319)
T KOG4714|consen  258 LS-ISN-QASVIS-------SWLSGDPVKSRIEITSLLPSRSLSINSF--DVLGPCLVCGTDAEAIYLTR  316 (319)
T ss_pred             EE-ecC-cccccc-------ccccCCcccceEeeeccccccceeeeee--eccCceEEeccccceEEEec
Confidence            21 110 011100       0111111111111222223333344433  33567899999888888875

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.88  E-value=7.5e-07  Score=80.98  Aligned_cols=221  Identities=15%  Similarity=0.099  Sum_probs=137.7

Q ss_pred             CCceEEEEecCCceeEEEeeccCceEEEEeCCCCCCCCCCCCccccccccccCCcceEeeCCCcceEEEEEcCCCCEEEE
Q psy12697        160 FDKCVHIWSARTGQLVHSYKGTGGIFEVCWNSRGTPPNPPESMEVDASIEIPQSKATKLIGHESEVFICAWNPVKDFLAS  239 (602)
Q Consensus       160 ~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~s  239 (602)
                      .+|+|..||..+|+.+.+.....                                     +....+ +. ..+++..+++
T Consensus         1 ~~g~l~~~d~~tG~~~W~~~~~~-------------------------------------~~~~~~-~~-~~~~~~~v~~   41 (238)
T PF13360_consen    1 DDGTLSALDPRTGKELWSYDLGP-------------------------------------GIGGPV-AT-AVPDGGRVYV   41 (238)
T ss_dssp             -TSEEEEEETTTTEEEEEEECSS-------------------------------------SCSSEE-ET-EEEETTEEEE
T ss_pred             CCCEEEEEECCCCCEEEEEECCC-------------------------------------CCCCcc-ce-EEEeCCEEEE
Confidence            36889999999999987654210                                     011111 11 2235677888


Q ss_pred             eeCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEeeCCCCCeEEEEeCCCeEEEEcC-CCcceeec-
Q psy12697        240 GSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFLATGSYDGYARIWTS-DGSLKSTL-  317 (602)
Q Consensus       240 ~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~-~~~~~~~~-  317 (602)
                      ++.++.+..||..+++........                 ..+.... ...+..+++++.++.+..+|. +|+..... 
T Consensus        42 ~~~~~~l~~~d~~tG~~~W~~~~~-----------------~~~~~~~-~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~  103 (238)
T PF13360_consen   42 ASGDGNLYALDAKTGKVLWRFDLP-----------------GPISGAP-VVDGGRVYVGTSDGSLYALDAKTGKVLWSIY  103 (238)
T ss_dssp             EETTSEEEEEETTTSEEEEEEECS-----------------SCGGSGE-EEETTEEEEEETTSEEEEEETTTSCEEEEEE
T ss_pred             EcCCCEEEEEECCCCCEEEEeecc-----------------cccccee-eecccccccccceeeeEecccCCcceeeeec
Confidence            889999999999888643221110                 1111111 224556777778889999994 46665552 


Q ss_pred             cccc---CCeEEEEEccCCCEEEEEecCCcEEEEeCCCCceeEEeeeccCCe-----------eeeeccCCCeEEEeeCC
Q psy12697        318 GQHK---GPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPA-----------LDVDWQSNTSFASCSTD  383 (602)
Q Consensus       318 ~~~~---~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~  383 (602)
                      ....   ...........++.++.+..++.+..+|.++|+.+..........           ..+.+. ++.++++..+
T Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~  182 (238)
T PF13360_consen  104 LTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVIS-DGRVYVSSGD  182 (238)
T ss_dssp             E-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECC-TTEEEEECCT
T ss_pred             cccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEE-CCEEEEEcCC
Confidence            2211   112223333347888888889999999999999988887644221           222233 4477777777


Q ss_pred             CeEEEEEcCCCceeeEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeeeEe
Q psy12697        384 QHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHD  441 (602)
Q Consensus       384 ~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~  441 (602)
                      +.+..+|+.+++.+....  ...+..+ ..+++..|+.++.++.|..||+++++.+.+
T Consensus       183 g~~~~~d~~tg~~~w~~~--~~~~~~~-~~~~~~~l~~~~~~~~l~~~d~~tG~~~W~  237 (238)
T PF13360_consen  183 GRVVAVDLATGEKLWSKP--ISGIYSL-PSVDGGTLYVTSSDGRLYALDLKTGKVVWQ  237 (238)
T ss_dssp             SSEEEEETTTTEEEEEEC--SS-ECEC-EECCCTEEEEEETTTEEEEEETTTTEEEEE
T ss_pred             CeEEEEECCCCCEEEEec--CCCccCC-ceeeCCEEEEEeCCCEEEEEECCCCCEEeE
Confidence            764444999998664333  2223321 346778888888999999999999987653

...

>KOG2695|consensus

Probab=98.85  E-value=1.4e-08  Score=89.26  Aligned_cols=154  Identities=14%  Similarity=0.168  Sum_probs=114.1

Q ss_pred             EEeeCCCeEEEEEcCCCceeeEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeeeEeeccccccEEEEEECCC
Q psy12697        378 ASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHDLQAHNKEIYTIKWSPT  457 (602)
Q Consensus       378 ~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~  457 (602)
                      ++.+.+..+-+-++.++.. ..+. ..+.|.++.|...++++..|..+|.|..+|++.+.     ++.......+     
T Consensus       228 fs~G~sqqv~L~nvetg~~-qsf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rn-----qG~~~~a~rl-----  295 (425)
T KOG2695|consen  228 FSVGLSQQVLLTNVETGHQ-QSFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRN-----QGNGWCAQRL-----  295 (425)
T ss_pred             ecccccceeEEEEeecccc-cccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecc-----cCCCcceEEE-----
Confidence            5556677788888887653 2233 45678889999889999999999999999998651     2211111111     


Q ss_pred             CCCCCCCCcceeeeeeeccCCccCCeEEEEEcc-CCCEEEEEeCCCeEEEEeCCCCce---eeeecccCCCeeEeee--c
Q psy12697        458 GPETSNPNMSLIFILKSTLGQHKGPIFALKWNK-RGNYILSAGVDKTTIIWDAASGQC---EQQFSFHSAPALDVDW--Q  531 (602)
Q Consensus       458 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~-~~~~l~s~~~dg~i~iwd~~~~~~---~~~~~~~~~~v~~~~~--s  531 (602)
                                          -|.+.|+++..-. ++++|++.+.+|+|.+||++--++   +..+.+|.+.-.-+-+  .
T Consensus       296 --------------------yh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~  355 (425)
T KOG2695|consen  296 --------------------YHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVK  355 (425)
T ss_pred             --------------------EcCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccc
Confidence                                1666777776655 778999999999999999987776   8889998765444443  3


Q ss_pred             CCc-eEEEeeCCCcEEEeecCCCCceeeeeccc
Q psy12697        532 SNT-SFASCSTDQHIHVCKLHSDKPVKSFEGHT  563 (602)
Q Consensus       532 ~~~-~l~~~~~d~~i~iw~~~~~~~~~~~~~~~  563 (602)
                      +.. .+++++.|...+||.++++..+.+++...
T Consensus       356 ~eeg~I~s~GdDcytRiWsl~~ghLl~tipf~~  388 (425)
T KOG2695|consen  356 EEEGSIFSVGDDCYTRIWSLDSGHLLCTIPFPY  388 (425)
T ss_pred             cccceEEEccCeeEEEEEecccCceeeccCCCC
Confidence            444 88999999999999999998888776543

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.84  E-value=1e-05  Score=72.66  Aligned_cols=230  Identities=13%  Similarity=0.144  Sum_probs=147.4

Q ss_pred             CceeEEeeCC-CCCeEEEEeCCC-eEEEEcCC-CcceeecccccCC--eEEEEEccCCCEEEEEec-----CCcEEEEeC
Q psy12697        281 KDVTSLDWNN-NGSFLATGSYDG-YARIWTSD-GSLKSTLGQHKGP--IFALKWNKRGNYILSAGV-----DKTTIIWDA  350 (602)
Q Consensus       281 ~~i~~~~~~~-~~~~l~~~~~dg-~i~i~~~~-~~~~~~~~~~~~~--i~~~~~~~~~~~l~~~~~-----dg~i~~wd~  350 (602)
                      .....++.+| ....++.+-.-| ...+||.. +.....+....+.  --.-.||+||++|++.-.     .|.|-+||.
T Consensus         5 ~RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~   84 (305)
T PF07433_consen    5 ARGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDA   84 (305)
T ss_pred             ccccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEEC
Confidence            4456677888 455566666655 46677765 4444444433322  225689999999998643     588999999


Q ss_pred             C-CCceeEEeeeccCCeeeeeccCCC-eEEEee------------------CCCeEEEEEcCCCceeeE--e--ccCCCC
Q psy12697        351 A-SGQCEQQFSFHSAPALDVDWQSNT-SFASCS------------------TDQHIHVCKLHSDKPVKS--F--EGHTNE  406 (602)
Q Consensus       351 ~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~------------------~~~~i~i~d~~~~~~~~~--~--~~~~~~  406 (602)
                      . +.+.+..+..+.-....+.+.|++ .++++.                  .+.++...|..+++.+.+  +  .-|...
T Consensus        85 ~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lS  164 (305)
T PF07433_consen   85 ARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLS  164 (305)
T ss_pred             cCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccc
Confidence            9 667777888777777788888887 455442                  123566677788887766  3  337778


Q ss_pred             eEEEEECCCCCEEEEEECCCe-------EEEEeCCCCeeeEeeccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCc
Q psy12697        407 VNAIKWDPQGLLLASCSDDMT-------LKIWSLDKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQH  479 (602)
Q Consensus       407 i~~~~~~~~~~~l~~~~~dg~-------i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  479 (602)
                      |..++++++|..++..-..|.       |-+++..  +.+..+..          .+                 .....-
T Consensus       165 iRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g--~~~~~~~~----------p~-----------------~~~~~l  215 (305)
T PF07433_consen  165 IRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRG--GALRLLPA----------PE-----------------EQWRRL  215 (305)
T ss_pred             eeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCC--CcceeccC----------Ch-----------------HHHHhh
Confidence            999999999876665544432       2222111  11111110          00                 012234


Q ss_pred             cCCeEEEEEccCCCEEEE-EeCCCeEEEEeCCCCceeeeecccCCCeeEeeecCCceEEEeeC
Q psy12697        480 KGPIFALKWNKRGNYILS-AGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTSFASCST  541 (602)
Q Consensus       480 ~~~v~~i~~s~~~~~l~s-~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~l~~~~~  541 (602)
                      .+.+-+|++++++.++++ +-..+.+.+||..+++.+.....  ..+..++-.+++++++.+.
T Consensus       216 ~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~l--~D~cGva~~~~~f~~ssG~  276 (305)
T PF07433_consen  216 NGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVPL--PDACGVAPTDDGFLVSSGQ  276 (305)
T ss_pred             CCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeecccc--CceeeeeecCCceEEeCCC
Confidence            567888999999987754 55678899999999998877653  3466677777775555544

>KOG1275|consensus

Probab=98.83  E-value=1.8e-07  Score=92.86  Aligned_cols=180  Identities=14%  Similarity=0.179  Sum_probs=138.6

Q ss_pred             CCeEEEeeCCCeEEEEEcCCCceeeEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeeeEeeccccccEEEEE
Q psy12697        374 NTSFASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHDLQAHNKEIYTIK  453 (602)
Q Consensus       374 ~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~  453 (602)
                      ...++.|+....+..+|+++.+..+...-..+.+.-++  .+++.+.+|...|+|.+-|.++.+.++++..|.+.+..+.
T Consensus       147 ~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR--~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfD  224 (1118)
T KOG1275|consen  147 PSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMR--YNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFD  224 (1118)
T ss_pred             CcceeecchhhheeeeecccceeeeeeeccCCceEEEE--ecCcEEEeecccceEEeecCCcCceeeeeeccccceeeee
Confidence            45678888888899999999887776665555555555  4678999999999999999999999999999988876655


Q ss_pred             ECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeC---------CCeEEEEeCCCCceeeeecccCCC
Q psy12697        454 WSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGV---------DKTTIIWDAASGQCEQQFSFHSAP  524 (602)
Q Consensus       454 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~---------dg~i~iwd~~~~~~~~~~~~~~~~  524 (602)
                      .                                    .|+.|+++|.         |.-|+|||++.-+.+..+..+-++
T Consensus       225 v------------------------------------~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P  268 (1118)
T KOG1275|consen  225 V------------------------------------QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP  268 (1118)
T ss_pred             c------------------------------------cCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCc
Confidence            4                                    5678888875         556899999988888777766665


Q ss_pred             eeEeeecCCc--eEEEeeCCCcEEEeecCCC-Cc-eeeeecccccceEEEEecCCcEEEEEECCCCCeEEEeccCCeEEe
Q psy12697        525 ALDVDWQSNT--SFASCSTDQHIHVCKLHSD-KP-VKSFEGHTTGQLVHSYKGTGGIFEVCWNSRGDKVGASASDGSVFK  600 (602)
Q Consensus       525 v~~~~~s~~~--~l~~~~~d~~i~iw~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~v~i  600 (602)
                       .-+.|.|.-  .+++++..|...+-|..+- .+ ......+         .....+..+++|++|+.||.+..+|.|.+
T Consensus       269 -~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~---------p~~s~i~~fDiSsn~~alafgd~~g~v~~  338 (1118)
T KOG1275|consen  269 -QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVN---------PNGSGISAFDISSNGDALAFGDHEGHVNL  338 (1118)
T ss_pred             -hhhhhcccccceEEEEecccceeeccccccCCCccceeEEc---------cCCCcceeEEecCCCceEEEecccCcEee
Confidence             457788876  8999999999999883321 11 1111111         12345999999999999999999999877


Q ss_pred             e
Q psy12697        601 N  601 (602)
Q Consensus       601 ~  601 (602)
                      +
T Consensus       339 w  339 (1118)
T KOG1275|consen  339 W  339 (1118)
T ss_pred             e
Confidence            4

>KOG2114|consensus

Probab=98.82  E-value=2.4e-06  Score=84.83  Aligned_cols=215  Identities=19%  Similarity=0.235  Sum_probs=140.2

Q ss_pred             EECCCCCeEEEeeCCceEEEEecCCceeEEEeeccCceEEEEeCCCCCCCCCCCCccccccccccCCcceEeeCCCcc-e
Q psy12697        147 AFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKGTGGIFEVCWNSRGTPPNPPESMEVDASIEIPQSKATKLIGHESE-V  225 (602)
Q Consensus       147 ~~s~d~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~-v  225 (602)
                      +|++.+..+|.|+.+|.|.+.+-. -+.++.|+                                        .+... |
T Consensus        30 c~~s~~~~vvigt~~G~V~~Ln~s-~~~~~~fq----------------------------------------a~~~siv   68 (933)
T KOG2114|consen   30 CCSSSTGSVVIGTADGRVVILNSS-FQLIRGFQ----------------------------------------AYEQSIV   68 (933)
T ss_pred             EEcCCCceEEEeeccccEEEeccc-ceeeehhe----------------------------------------ecchhhh
Confidence            467888999999999999888732 22223322                                        23333 3


Q ss_pred             EEEEEcCCCCEEEEeeCCC-----cEEEEeCCCCCCCCCccceEEEEEEecCCCccc-CCCCceeEEeeCCCCCeEEEEe
Q psy12697        226 FICAWNPVKDFLASGSGDS-----TARIWDMTDSTKKDPKELQIVLRHCISKGGTEV-PSNKDVTSLDWNNNGSFLATGS  299 (602)
Q Consensus       226 ~~~~~~~~~~~l~s~~~dg-----~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~  299 (602)
                      ..+....+..+|++.+.|+     .+++|+++......+  +.....+.....  .. ....++.+++.+.+-+.+|+|-
T Consensus        69 ~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~s--P~c~~~~ri~~~--~np~~~~p~s~l~Vs~~l~~Iv~Gf  144 (933)
T KOG2114|consen   69 QFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNS--PQCLYEHRIFTI--KNPTNPSPASSLAVSEDLKTIVCGF  144 (933)
T ss_pred             hHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCC--cceeeeeeeecc--CCCCCCCcceEEEEEccccEEEEEe
Confidence            3333333336788776654     489999987653332  122211111110  11 1357789999999999999999


Q ss_pred             CCCeEEEEcCC-----CcceeecccccCCeEEEEEccCCCEEEEEecCCcEEEEeCCCCce-eEEeeeccCCeeeeeccC
Q psy12697        300 YDGYARIWTSD-----GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQC-EQQFSFHSAPALDVDWQS  373 (602)
Q Consensus       300 ~dg~i~i~~~~-----~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~-~~~~~~~~~~~~~~~~~~  373 (602)
                      .+|.|..+.-+     +...........+|+.+.+..++..++-+..-..|.+|.+....+ ...+..+..+..|..+++
T Consensus       145 ~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~  224 (933)
T KOG2114|consen  145 TNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSD  224 (933)
T ss_pred             cCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeEEEEecceeEEEEecCCCcceeeeccCCccceeeecCC
Confidence            99999998633     333333344567999999999888744344455799999884442 444677778888888888


Q ss_pred             CCeEEEeeCCCeEEEEEcCCCceeeEec-cCCCC
Q psy12697        374 NTSFASCSTDQHIHVCKLHSDKPVKSFE-GHTNE  406 (602)
Q Consensus       374 ~~~~~~~~~~~~i~i~d~~~~~~~~~~~-~~~~~  406 (602)
                      ...-+.++.+..+.+|+....++...+. +|...
T Consensus       225 ~t~qfIca~~e~l~fY~sd~~~~cfaf~~g~kk~  258 (933)
T KOG2114|consen  225 GTYQFICAGSEFLYFYDSDGRGPCFAFEVGEKKE  258 (933)
T ss_pred             CCccEEEecCceEEEEcCCCcceeeeecCCCeEE
Confidence            8774555567789999988777666665 55443

>KOG1920|consensus

Probab=98.81  E-value=4.3e-06  Score=86.33  Aligned_cols=261  Identities=10%  Similarity=0.181  Sum_probs=157.6

Q ss_pred             CCceeEEeeCCCCCeEEEEeCCCeEEEEcCCCcceeecccccCCeEEEEEccCCCEEEEEecCCcEEEEeCCCCceeEEe
Q psy12697        280 NKDVTSLDWNNNGSFLATGSYDGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQF  359 (602)
Q Consensus       280 ~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~  359 (602)
                      ...|.++.|..++..++.+...|.|.+-|...........-...|.+++|+||++.++..+..+++.+-+ .+..++...
T Consensus        68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT-~~f~~i~E~  146 (1265)
T KOG1920|consen   68 DDEIVSVQFLADTNSICVITALGDIILVDPETLELEIVGNVDNGISAASWSPDEELLALITGRQTLLFMT-KDFEPIAEK  146 (1265)
T ss_pred             CcceEEEEEecccceEEEEecCCcEEEEcccccceeeeeeccCceEEEeecCCCcEEEEEeCCcEEEEEe-ccccchhcc
Confidence            3679999999999999999999999999887666666666778999999999999999988877776643 333322221


Q ss_pred             eeccCCeeeeeccCCCeEEEeeCCCeEEEEEcCCC-----ceeeEec-----cCCCCeEEEEECCCCCEEEEEE-----C
Q psy12697        360 SFHSAPALDVDWQSNTSFASCSTDQHIHVCKLHSD-----KPVKSFE-----GHTNEVNAIKWDPQGLLLASCS-----D  424 (602)
Q Consensus       360 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~-----~~~~~~~-----~~~~~i~~~~~~~~~~~l~~~~-----~  424 (602)
                      ..+      ..-.+.+.++.++....=.-+.-..+     +++...+     .-.+.=+.++|--||+++|+..     .
T Consensus       147 ~L~------~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~  220 (1265)
T KOG1920|consen  147 PLD------ADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETG  220 (1265)
T ss_pred             ccc------cccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCC
Confidence            111      11111222333332221111111111     0000000     0112235689999999999843     2


Q ss_pred             CCeEEEEeCCCCeeeEeeccccccEEEEEECCCCCCCCCC----Ccceeeee-eec---------cCCccCCeEEEEEcc
Q psy12697        425 DMTLKIWSLDKDNCVHDLQAHNKEIYTIKWSPTGPETSNP----NMSLIFIL-KST---------LGQHKGPIFALKWNK  490 (602)
Q Consensus       425 dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~----~~~~~~~~-~~~---------~~~~~~~v~~i~~s~  490 (602)
                      ...|++||.. +..-..-......-.+++|-|.|..++..    +.+.+..+ ++.         .......+..++|+.
T Consensus       221 ~RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns  299 (1265)
T KOG1920|consen  221 TRKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWNS  299 (1265)
T ss_pred             ceeEEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCcccccchheeeecC
Confidence            3789999976 43333333334445678899977655432    22222222 221         222334589999999


Q ss_pred             CCCEEEE---EeCCCeEEEEeCCCCce--eeeecccCCCeeEeeecCCc--eEEEeeCCCcEEEeec
Q psy12697        491 RGNYILS---AGVDKTTIIWDAASGQC--EQQFSFHSAPALDVDWQSNT--SFASCSTDQHIHVCKL  550 (602)
Q Consensus       491 ~~~~l~s---~~~dg~i~iwd~~~~~~--~~~~~~~~~~v~~~~~s~~~--~l~~~~~d~~i~iw~~  550 (602)
                      ++..||+   ......|++|-+.+-.-  .+.+.......  +.|+|-.  .+..-..+|...++++
T Consensus       300 ~sdiLAv~~~~~e~~~v~lwt~~NyhWYLKq~l~~~~~~~--~~W~p~~~~~L~v~~~sG~~~v~~~  364 (1265)
T KOG1920|consen  300 NSDILAVVTSNLENSLVQLWTTGNYHWYLKQELQFSQKAL--LMWDPVTEKTLHVLRESGQRLVRDF  364 (1265)
T ss_pred             CCCceeeeecccccceEEEEEecCeEEEEEEEEecccccc--ccccCCCceeEEEEecCCcEEEEEE
Confidence            9999998   55556699998876532  23333222222  7888866  5555557777776665

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.81  E-value=1.6e-05  Score=71.42  Aligned_cols=240  Identities=12%  Similarity=0.058  Sum_probs=146.6

Q ss_pred             eEEEEEcc-CCCEEEEEecCCc-EEEEeCCCCceeEEeeeccCCe--eeeeccCCCeEEEeeC------CCeEEEEEcC-
Q psy12697        324 IFALKWNK-RGNYILSAGVDKT-TIIWDAASGQCEQQFSFHSAPA--LDVDWQSNTSFASCST------DQHIHVCKLH-  392 (602)
Q Consensus       324 i~~~~~~~-~~~~l~~~~~dg~-i~~wd~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~------~~~i~i~d~~-  392 (602)
                      ...++.+| .+..++.+-.-|+ ..+||..+++....+......-  --..|++++.++..++      .|.|-|||.. 
T Consensus         7 gH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~   86 (305)
T PF07433_consen    7 GHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAAR   86 (305)
T ss_pred             ccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcC
Confidence            44677888 4455666666664 6789999999888776544432  2457888877655543      4789999999 


Q ss_pred             CCceeeEeccCCCCeEEEEECCCCCEEEEEEC-------CCeEEEEeCCCCeeeEe-eccccccEEEEEECCCCCCCCCC
Q psy12697        393 SDKPVKSFEGHTNEVNAIKWDPQGLLLASCSD-------DMTLKIWSLDKDNCVHD-LQAHNKEIYTIKWSPTGPETSNP  464 (602)
Q Consensus       393 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-------dg~i~iwd~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~  464 (602)
                      +.+.+.++..|.-....+.+.|||+.|+++-.       .|+-++ ++.+.++-.. +...++.+..-            
T Consensus        87 ~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kL-Nl~tM~psL~~ld~~sG~ll~q------------  153 (305)
T PF07433_consen   87 GYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKL-NLDTMQPSLVYLDARSGALLEQ------------  153 (305)
T ss_pred             CcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceec-ChhhcCCceEEEecCCCceeee------------
Confidence            66788888888878888999999988887632       122222 2222222111 11122211111            


Q ss_pred             CcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCCCe-------EEEEeCCCCceeeee-------cccCCCeeEeee
Q psy12697        465 NMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKT-------TIIWDAASGQCEQQF-------SFHSAPALDVDW  530 (602)
Q Consensus       465 ~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~-------i~iwd~~~~~~~~~~-------~~~~~~v~~~~~  530 (602)
                             .......|...|..+++.++|..++..-..|.       |.+++..  +.+..+       ..-.+.+-+|++
T Consensus       154 -------~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g--~~~~~~~~p~~~~~~l~~Y~gSIa~  224 (305)
T PF07433_consen  154 -------VELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRG--GALRLLPAPEEQWRRLNGYIGSIAA  224 (305)
T ss_pred             -------eecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCC--CcceeccCChHHHHhhCCceEEEEE
Confidence                   01111336667777888878776665544332       3444332  212222       223467889999


Q ss_pred             cCCc-eE-EEeeCCCcEEEeecCCCCceeeeecccccceEEEEecCCcEEEEEECCCCCeEEEeccCCeEE
Q psy12697        531 QSNT-SF-ASCSTDQHIHVCKLHSDKPVKSFEGHTTGQLVHSYKGTGGIFEVCWNSRGDKVGASASDGSVF  599 (602)
Q Consensus       531 s~~~-~l-~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~v~  599 (602)
                      ++++ .+ +|+-.-+.+.+||..+++.+....-..             +..++-.+++ ++++.+....+.
T Consensus       225 ~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~l~D-------------~cGva~~~~~-f~~ssG~G~~~~  281 (305)
T PF07433_consen  225 DRDGRLIAVTSPRGGRVAVWDAATGRLLGSVPLPD-------------ACGVAPTDDG-FLVSSGQGQLIR  281 (305)
T ss_pred             eCCCCEEEEECCCCCEEEEEECCCCCEeeccccCc-------------eeeeeecCCc-eEEeCCCccEEE
Confidence            9998 55 555567889999998887766554332             6677777666 666655544443

>KOG4714|consensus

Probab=98.77  E-value=3.2e-07  Score=77.66  Aligned_cols=148  Identities=14%  Similarity=0.175  Sum_probs=88.0

Q ss_pred             ccCCCEEEEEecCCcEEEEeCCCCcee-EEeeeccCCeeeeeccCCCeEEEeeC------CCeEEEEEcCCCceeeEecc
Q psy12697        330 NKRGNYILSAGVDKTTIIWDAASGQCE-QQFSFHSAPALDVDWQSNTSFASCST------DQHIHVCKLHSDKPVKSFEG  402 (602)
Q Consensus       330 ~~~~~~l~~~~~dg~i~~wd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~i~i~d~~~~~~~~~~~~  402 (602)
                      +-.++.++++..||.+.+.+.+.-..+ .++........+......+.++....      -+..+.|+++..+....-..
T Consensus        98 s~~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~  177 (319)
T KOG4714|consen   98 TMTDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKK  177 (319)
T ss_pred             cccCCceEecCCCceEEEEechHHHhhhhhcccccccccccceeecccEEecCCcceEeeccceeeeccccccccccccc
Confidence            334677999999999999987652111 11111111111111112222333332      34455666655443222222


Q ss_pred             CCCCeEEEEECCC-CCEEEEEECCCeEEEEeCCCCeee-EeeccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCcc
Q psy12697        403 HTNEVNAIKWDPQ-GLLLASCSDDMTLKIWSLDKDNCV-HDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHK  480 (602)
Q Consensus       403 ~~~~i~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  480 (602)
                      ....|++++-+|. .+.+++|+.||.+.+||.++.... ..+..                                  |+
T Consensus       178 ~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~a----------------------------------hk  223 (319)
T KOG4714|consen  178 ALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKA----------------------------------HK  223 (319)
T ss_pred             ccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHH----------------------------------hh
Confidence            2334999999994 567788889999999999876332 22344                                  44


Q ss_pred             CCeEEEEEcc-CCCEEEEEeCCCeEEEEeCCC
Q psy12697        481 GPIFALKWNK-RGNYILSAGVDKTTIIWDAAS  511 (602)
Q Consensus       481 ~~v~~i~~s~-~~~~l~s~~~dg~i~iwd~~~  511 (602)
                      .++..+.|+| ++..|+++++||.+..||..+
T Consensus       224 ~~i~eV~FHpk~p~~Lft~sedGslw~wdas~  255 (319)
T KOG4714|consen  224 AEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST  255 (319)
T ss_pred             hhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence            4555555554 567899999999999999774

>KOG3617|consensus

Probab=98.75  E-value=9.2e-07  Score=87.26  Aligned_cols=330  Identities=13%  Similarity=0.124  Sum_probs=172.9

Q ss_pred             eEEEEEcCCCCEEEEee----CCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEeeCCCCCeEEEEeC
Q psy12697        225 VFICAWNPVKDFLASGS----GDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFLATGSY  300 (602)
Q Consensus       225 v~~~~~~~~~~~l~s~~----~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~  300 (602)
                      -+-.+|+|...+++.++    ..|.|.||- +++++.....                 ..-.+++++|+|..-.|+.|-.
T Consensus        18 sti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt-----------------~P~hatSLCWHpe~~vLa~gwe   79 (1416)
T KOG3617|consen   18 STISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVT-----------------YPVHATSLCWHPEEFVLAQGWE   79 (1416)
T ss_pred             ccccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCcccc-----------------cceehhhhccChHHHHHhhccc
Confidence            34468999999988775    357788874 3333221111                 1234688999999989999999


Q ss_pred             CCeEEEEcCCCccee-ecccccCCeEEEEEccCCCEEEEEecCCcEEEEeCCCCceeEEeee--cc----CCeeeeeccC
Q psy12697        301 DGYARIWTSDGSLKS-TLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSF--HS----APALDVDWQS  373 (602)
Q Consensus       301 dg~i~i~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~--~~----~~~~~~~~~~  373 (602)
                      -|.+.+|........ ....|..+|..+.||++|..++++..-|.+.+|....-..++....  |.    -...+...++
T Consensus        80 ~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~~g~~q~~~~~~hel~~~ltl~cfRL~~  159 (1416)
T KOG3617|consen   80 MGVSDVQKTNTTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDVIGEIQTSNIMQHELNDQLTLWCFRLSY  159 (1416)
T ss_pred             cceeEEEecCCceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeeeccccccchhhhhHhhceeeEEEEecCC
Confidence            999999998754444 4557999999999999999999999999999997653222221111  10    1122333333


Q ss_pred             CC-------eEEEeeCCCeEE-EEEcCCCceeeEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeeeEeeccc
Q psy12697        374 NT-------SFASCSTDQHIH-VCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHDLQAH  445 (602)
Q Consensus       374 ~~-------~~~~~~~~~~i~-i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~  445 (602)
                      ++       ..++.+.+..+- .++.+....-.... |       .=.|+|..+..++.+|+|+-.|- ++++....+..
T Consensus       160 ~~Ee~~~laKaaVtgDe~alD~~fnwk~~~a~rs~~-k-------sgv~~g~~F~~~~~~GtVyyvdq-~g~~~~V~k~d  230 (1416)
T KOG3617|consen  160 DREEKFKLAKAAVTGDESALDEPFNWKESLAERSDE-K-------SGVPKGTEFLFAGKSGTVYYVDQ-NGRQRTVHKLD  230 (1416)
T ss_pred             ChHHhhhhhhhhccCchhhhcccccCccchhhcccc-c-------cCCCCCcEEEEEcCCceEEEEcC-CCcEEEEEEcc
Confidence            31       133334333332 33322111111110 1       12478888999999999988873 34433332211


Q ss_pred             cccEEEEEECCCCCCCCCCCcce-eeeeeeccCCccCCeEEEEEcc-----CCCEEEEEeCCCeEEEEeCCCCceeeeec
Q psy12697        446 NKEIYTIKWSPTGPETSNPNMSL-IFILKSTLGQHKGPIFALKWNK-----RGNYILSAGVDKTTIIWDAASGQCEQQFS  519 (602)
Q Consensus       446 ~~~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~v~~i~~s~-----~~~~l~s~~~dg~i~iwd~~~~~~~~~~~  519 (602)
                      ..  ..+-|.+....+..-.... ...+.....+....+..+..|-     .|. ++.+-..|.++      ......+.
T Consensus       231 S~--vQmLf~~~~eai~~i~e~lr~~l~~v~~~G~~ee~~~vk~sgk~GgrqGg-iA~sEssGvLr------~~eKyg~e  301 (1416)
T KOG3617|consen  231 SE--VQMLFMGYCEAISIIIEFLRDCLIFVLAKGTSEERCAVKVSGKLGGRQGG-IACSESSGVLR------KSEKYGLE  301 (1416)
T ss_pred             ch--HHHHHhcccceEEEEeeeceeeEEEecCCCchHHhhhhhhccccCCccCc-ccccccccccc------CCcchhhh
Confidence            11  1111111100000000000 0000000001111111111111     111 23222223110      11111111


Q ss_pred             ccCCCeeEeeecCCc-eEEEeeCCCcEEEeecCCCCceeeeecccccceEEEEec----CCcEEEEEECCCCCeEEEecc
Q psy12697        520 FHSAPALDVDWQSNT-SFASCSTDQHIHVCKLHSDKPVKSFEGHTTGQLVHSYKG----TGGIFEVCWNSRGDKVGASAS  594 (602)
Q Consensus       520 ~~~~~v~~~~~s~~~-~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~----~~~i~~l~~spdg~~l~~~~~  594 (602)
                       ....+++++++.-+ .+..|...|.+.+|.-.....    .+. .+....++.+    .+.|+.+.|.|--+.+++-+.
T Consensus       302 -~ge~~~c~cY~~~~~~l~agt~~gnv~~w~~v~~~f----~g~-p~~d~w~l~~~~e~~g~I~~i~Wg~~k~~~avn~~  375 (1416)
T KOG3617|consen  302 -LGEGILCMCYGEKEIRLWAGTKEGNVTIWLDVNKGF----QGD-PTIDVWTLNGKRESLGKISLIRWGPIKSTAAVNTE  375 (1416)
T ss_pred             -cCCceEEEEEeccceEEEecccCCcEEEeeecCccc----cCC-CCcceEEecCchhhccceEEEEeccccchhhhhhh
Confidence             34569999999988 999999999999996332211    111 1122223322    478999999997766665554


Q ss_pred             CC
Q psy12697        595 DG  596 (602)
Q Consensus       595 dg  596 (602)
                      ..
T Consensus       376 ~~  377 (1416)
T KOG3617|consen  376 ED  377 (1416)
T ss_pred             hh
Confidence            43

>KOG1645|consensus

Probab=98.75  E-value=8.3e-07  Score=80.04  Aligned_cols=255  Identities=15%  Similarity=0.143  Sum_probs=148.4

Q ss_pred             eeeeecccceeeeeeeccCCceEEEEECCCCC-eEEEeeCCceEEEEecCCceeEEEeeccCceEEEEeCCCCCCCCCCC
Q psy12697        122 LPLWDVERGECLNTLTRHTEPVYSVAFSPDGK-FLASGSFDKCVHIWSARTGQLVHSYKGTGGIFEVCWNSRGTPPNPPE  200 (602)
Q Consensus       122 i~vwd~~~~~~~~~l~~h~~~V~~~~~s~d~~-~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (602)
                      +++.+..+-+...-+.+|...|..++|||..+ +|..++.+..|+|.|+++...+..+.                     
T Consensus       175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~---------------------  233 (463)
T KOG1645|consen  175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYI---------------------  233 (463)
T ss_pred             eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeehee---------------------
Confidence            56666666666777788999999999999887 88899999999999999987775443                     


Q ss_pred             CccccccccccCCcceEeeCCCcceEEEEEcCCC-CEEEEeeCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCC
Q psy12697        201 SMEVDASIEIPQSKATKLIGHESEVFICAWNPVK-DFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPS  279 (602)
Q Consensus       201 ~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~-~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (602)
                                         .| ..+++++|.-+. +++..|-..|.|.+||+...+..........             .
T Consensus       234 -------------------a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~~~~~~~e~~a~~-------------t  280 (463)
T KOG1645|consen  234 -------------------AY-NQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQPEGPLMELVANV-------------T  280 (463)
T ss_pred             -------------------cc-CCceeeeeccCCcceeEEeccCceEEEEEccCCCchHhhhhhhh-------------c
Confidence                               34 678899998876 6778888899999999987654211110000             0


Q ss_pred             CCceeEE------eeCCCCCeEEEEeCCCeEEEEcCCCc---ceeec-ccccCCeEEEEEccCCCEEEEEecC-C-----
Q psy12697        280 NKDVTSL------DWNNNGSFLATGSYDGYARIWTSDGS---LKSTL-GQHKGPIFALKWNKRGNYILSAGVD-K-----  343 (602)
Q Consensus       280 ~~~i~~~------~~~~~~~~l~~~~~dg~i~i~~~~~~---~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~d-g-----  343 (602)
                      ..+|..+      ...+.|.+++....+  +..|+..+.   ....+ .+..+...++++.+..++++..-.. .     
T Consensus       281 ~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vlele~pG~cismqy~~~snh~l~tyRs~pn~p~~  358 (463)
T KOG1645|consen  281 INPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLELEPPGICISMQYHGVSNHLLLTYRSNPNFPQS  358 (463)
T ss_pred             cCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCcccccCCCcceeeeeecCccceEEEEecCCCCCccc
Confidence            1222222      233345455544432  455664421   11111 1234556667777655655543322 0     


Q ss_pred             -cEE-EEeCCCCceeEEee-ec-cCCe------eeeeccCC-Ce-EEEeeCCCeEEEEEcCCCceeeEeccCCCCeEEEE
Q psy12697        344 -TTI-IWDAASGQCEQQFS-FH-SAPA------LDVDWQSN-TS-FASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIK  411 (602)
Q Consensus       344 -~i~-~wd~~~~~~~~~~~-~~-~~~~------~~~~~~~~-~~-~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~  411 (602)
                       .+- --|-.+|..+...+ .+ ...-      ..+.-.++ +. +.++...+.+.+||..+.+.+.++.-. .+|..++
T Consensus       359 r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~lil~D~~s~evvQ~l~~~-epv~Dic  437 (463)
T KOG1645|consen  359 RFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNELILQDPHSFEVVQTLALS-EPVLDIC  437 (463)
T ss_pred             eeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecCCcceeEEeccchhheeeecccC-cceeecc
Confidence             011 11222232222111 01 0000      00111122 22 344556688999999999988887743 6777776


Q ss_pred             ECC-C-CCEEEEEECCCeEEEEeCC
Q psy12697        412 WDP-Q-GLLLASCSDDMTLKIWSLD  434 (602)
Q Consensus       412 ~~~-~-~~~l~~~~~dg~i~iwd~~  434 (602)
                      ... + +.+|++-. |..++||...
T Consensus       438 p~~~n~~syLa~LT-d~~v~Iyk~e  461 (463)
T KOG1645|consen  438 PNDTNGSSYLALLT-DDRVHIYKNE  461 (463)
T ss_pred             eeecCCcchhhhee-cceEEEEecC
Confidence            554 3 34565554 4568888643

>KOG2066|consensus

Probab=98.73  E-value=5.7e-07  Score=88.41  Aligned_cols=181  Identities=19%  Similarity=0.335  Sum_probs=131.0

Q ss_pred             CCceEEEEECCCCCeEEEeeCCceEEEEecCCceeEEEeeccCceEEEEeCCCCCCCCCCCCccccccccccCCcceEee
Q psy12697        140 TEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKGTGGIFEVCWNSRGTPPNPPESMEVDASIEIPQSKATKLI  219 (602)
Q Consensus       140 ~~~V~~~~~s~d~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  219 (602)
                      .+.++|++++  +++|+-|+.+|.|.+.+.+..- .                                         ...
T Consensus        39 ~D~is~~av~--~~~~~~GtH~g~v~~~~~~~~~-~-----------------------------------------~~~   74 (846)
T KOG2066|consen   39 NDAISCCAVH--DKFFALGTHRGAVYLTTCQGNP-K-----------------------------------------TNF   74 (846)
T ss_pred             hhHHHHHHhh--cceeeeccccceEEEEecCCcc-c-----------------------------------------ccc
Confidence            4566777777  7899999999999998864321 1                                         111


Q ss_pred             CCCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEeeCCC-----CCe
Q psy12697        220 GHESEVFICAWNPVKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNN-----GSF  294 (602)
Q Consensus       220 ~h~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-----~~~  294 (602)
                      .|...      ..+|.++++|+.||+|.|-.+-+.........                 ..++.+++++|+     .+.
T Consensus        75 ~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~~df-----------------~rpiksial~Pd~~~~~sk~  131 (846)
T KOG2066|consen   75 DHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQYDF-----------------KRPIKSIALHPDFSRQQSKQ  131 (846)
T ss_pred             ccccc------ccCCceEEEecCCCcEEEeeccCCccceeEec-----------------CCcceeEEeccchhhhhhhh
Confidence            23222      45789999999999999998877665322221                 477999999997     568


Q ss_pred             EEEEeCCCeEEEEcCC--Ccc-eeecccccCCeEEEEEccCCCEEEEEecCCcEEEEeCCCCceeEEeeeccCC------
Q psy12697        295 LATGSYDGYARIWTSD--GSL-KSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAP------  365 (602)
Q Consensus       295 l~~~~~dg~i~i~~~~--~~~-~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~------  365 (602)
                      +++|+.-| +.++..+  +.. ...+....++|.+++|.  |++++-++.+| |++||+.+++.+..++.....      
T Consensus       132 fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~--g~lIAWand~G-v~vyd~~~~~~l~~i~~p~~~~R~e~f  207 (846)
T KOG2066|consen  132 FVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR--GNLIAWANDDG-VKVYDTPTRQRLTNIPPPSQSVRPELF  207 (846)
T ss_pred             eeecCcce-EEEehhhhhcCccceeeecCccceEEEEec--CcEEEEecCCC-cEEEeccccceeeccCCCCCCCCcccC
Confidence            99999999 8887744  222 22466778999999997  77888888776 999999998888777654433      


Q ss_pred             eeeeeccCCCeEEEeeCCCeEEEEEcC
Q psy12697        366 ALDVDWQSNTSFASCSTDQHIHVCKLH  392 (602)
Q Consensus       366 ~~~~~~~~~~~~~~~~~~~~i~i~d~~  392 (602)
                      ...+.|.++..++.|= ..+|++..++
T Consensus       208 pphl~W~~~~~LVIGW-~d~v~i~~I~  233 (846)
T KOG2066|consen  208 PPHLHWQDEDRLVIGW-GDSVKICSIK  233 (846)
T ss_pred             CCceEecCCCeEEEec-CCeEEEEEEe
Confidence            3456777777777664 4567777776

>KOG3621|consensus

Probab=98.73  E-value=3.3e-06  Score=82.08  Aligned_cols=204  Identities=14%  Similarity=0.221  Sum_probs=124.9

Q ss_pred             CCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEeeCCCCCeEEEEeC
Q psy12697        221 HESEVFICAWNPVKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFLATGSY  300 (602)
Q Consensus       221 h~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~  300 (602)
                      |...|.--++...+++++.|+.-|.+.+|+-..+.......-.               ....+..+..+++..++|+|+.
T Consensus        32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~---------------~~~~~~~~~vs~~e~lvAagt~   96 (726)
T KOG3621|consen   32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEG---------------ATGITCVRSVSSVEYLVAAGTA   96 (726)
T ss_pred             CcceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccC---------------ccceEEEEEecchhHhhhhhcC
Confidence            4556666778888999999999999999998776543221100               1355677788999999999999


Q ss_pred             CCeEEEEcCCCcc----eeec---ccccCCeEEEEEccCCCEEEEEecCCcEEEEeCCCC----ceeEEeeeccCCeeee
Q psy12697        301 DGYARIWTSDGSL----KSTL---GQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASG----QCEQQFSFHSAPALDV  369 (602)
Q Consensus       301 dg~i~i~~~~~~~----~~~~---~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~~----~~~~~~~~~~~~~~~~  369 (602)
                      .|.|.++.++...    ....   ..|...|++++|++++..+++|...|.|.+-.+.+.    ...+.+-.....|..+
T Consensus        97 ~g~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQl  176 (726)
T KOG3621|consen   97 SGRVSVFQLNKELPRDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQL  176 (726)
T ss_pred             CceEEeehhhccCCCcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEe
Confidence            9999999865321    1111   236788999999999999999999999999887762    1112222334455555


Q ss_pred             eccCCCeEEEeeCCCeEEEEEcCCCc--eeeEeccCCCCeEEEEECCC----CCEEEEEECCCeEEEEeCC-CCeeeEee
Q psy12697        370 DWQSNTSFASCSTDQHIHVCKLHSDK--PVKSFEGHTNEVNAIKWDPQ----GLLLASCSDDMTLKIWSLD-KDNCVHDL  442 (602)
Q Consensus       370 ~~~~~~~~~~~~~~~~i~i~d~~~~~--~~~~~~~~~~~i~~~~~~~~----~~~l~~~~~dg~i~iwd~~-~~~~~~~~  442 (602)
                      .+...-.+++.....  .+++.+..+  .+.+-....-.-...+|-|.    .+-.+.++.-| .|+|..+ .|+.+.+.
T Consensus       177 D~~q~~LLVStl~r~--~Lc~tE~eti~QIG~k~R~~~~~~GACF~~g~~~~q~~~IycaRPG-~RlWead~~G~V~~Th  253 (726)
T KOG3621|consen  177 DYLQSYLLVSTLTRC--ILCQTEAETITQIGKKPRKSLIDFGACFFPGQCKAQKPQIYCARPG-LRLWEADFAGEVIKTH  253 (726)
T ss_pred             ecccceehHhhhhhh--heeecchhHHHHhcCCCcCCccccceEEeeccccCCCceEEEecCC-CceEEeecceeEEEee
Confidence            555444333333222  223332221  11111101101234455553    34455555655 6899876 34555444

>KOG1920|consensus

Probab=98.73  E-value=4.7e-06  Score=86.01  Aligned_cols=215  Identities=16%  Similarity=0.269  Sum_probs=137.5

Q ss_pred             CCceEEEEECCCCCeEEEeeCCceEEEEecCCceeEEEeeccCceEEEEeCCCCCCCCCCCCccccccccccCCcceEee
Q psy12697        140 TEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKGTGGIFEVCWNSRGTPPNPPESMEVDASIEIPQSKATKLI  219 (602)
Q Consensus       140 ~~~V~~~~~s~d~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  219 (602)
                      .+.|.++.|--++.-++.+..+|.|.+-|.++......                                         .
T Consensus        68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eiv-----------------------------------------g  106 (1265)
T KOG1920|consen   68 DDEIVSVQFLADTNSICVITALGDIILVDPETLELEIV-----------------------------------------G  106 (1265)
T ss_pred             CcceEEEEEecccceEEEEecCCcEEEEcccccceeee-----------------------------------------e
Confidence            36799999999999999999999999998877654321                                         1


Q ss_pred             CCCcceEEEEEcCCCCEEEEeeCCCcEEEEeC----CCCCCCC--------Cccc------eEEEEEEec-----C--CC
Q psy12697        220 GHESEVFICAWNPVKDFLASGSGDSTARIWDM----TDSTKKD--------PKEL------QIVLRHCIS-----K--GG  274 (602)
Q Consensus       220 ~h~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~----~~~~~~~--------~~~~------~~~~~~~~~-----~--~~  274 (602)
                      .-...|.+++|+||+..++..+.++++.+-.-    -..+...        ....      ..+...+..     +  ..
T Consensus       107 ~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~e  186 (1265)
T KOG1920|consen  107 NVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKE  186 (1265)
T ss_pred             eccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhccccccccccccccceecccccceeeecchhhhccccccccc
Confidence            13567888999999999988888887766432    1111110        0000      000000000     0  00


Q ss_pred             ---cccCCCCceeEEeeCCCCCeEEEE-----eCCCeEEEEcCCCcceeecccccCCeEEEEEccCCCEEEEEe---cCC
Q psy12697        275 ---TEVPSNKDVTSLDWNNNGSFLATG-----SYDGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAG---VDK  343 (602)
Q Consensus       275 ---~~~~~~~~i~~~~~~~~~~~l~~~-----~~dg~i~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~---~dg  343 (602)
                         ........=+++.|-.||+++|+.     .....|++||.+|.+...-....+.-.+++|-|.|..+++..   .|+
T Consensus       187 k~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~drEg~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~  266 (1265)
T KOG1920|consen  187 KALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRVYDREGALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDS  266 (1265)
T ss_pred             ccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEEecccchhhcccCcccccccceeecCCCCeEeeeeecCCCC
Confidence               000012334579999999999983     333789999998766655555555667899999999888753   456


Q ss_pred             cEEEEeCC---CCceeEEeeeccCCeeeeeccCCCeEEEe----eCCCeEEEEEcCCCc
Q psy12697        344 TTIIWDAA---SGQCEQQFSFHSAPALDVDWQSNTSFASC----STDQHIHVCKLHSDK  395 (602)
Q Consensus       344 ~i~~wd~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~i~i~d~~~~~  395 (602)
                      .|.++.-.   .++....+......+..++|+.++.+++.    .....|++|-..+..
T Consensus       267 ~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~Nyh  325 (1265)
T KOG1920|consen  267 DIVFFERNGLRHGEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYH  325 (1265)
T ss_pred             cEEEEecCCccccccccCCcccccchheeeecCCCCceeeeecccccceEEEEEecCeE
Confidence            78888732   22222233444555889999998765544    344459999987754

>KOG1832|consensus

Probab=98.72  E-value=1.9e-08  Score=99.19  Aligned_cols=219  Identities=17%  Similarity=0.230  Sum_probs=152.0

Q ss_pred             eeeeeeeccCCceEEEEECCCCCeEEEeeCCceEEEEecCCceeEEEeeccCceEEEEeCCCCCCCCCCCCccccccccc
Q psy12697        131 ECLNTLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKGTGGIFEVCWNSRGTPPNPPESMEVDASIEI  210 (602)
Q Consensus       131 ~~~~~l~~h~~~V~~~~~s~d~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (602)
                      +..++|+.|+...+|++||-+.++|+.|+-.|.|+++++.+|....                                  
T Consensus      1092 r~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~---------------------------------- 1137 (1516)
T KOG1832|consen 1092 RSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEE---------------------------------- 1137 (1516)
T ss_pred             ccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccc----------------------------------
Confidence            4556788899999999999999999999999999999999987653                                  


Q ss_pred             cCCcceEeeCCCcceEEEEEcCCCCEEEEeeCCC--cEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEee
Q psy12697        211 PQSKATKLIGHESEVFICAWNPVKDFLASGSGDS--TARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDW  288 (602)
Q Consensus       211 ~~~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  288 (602)
                            ...+|...|+.+.-+-+|..+++.+.-.  -..+|++.+....         +|.          -..-.++.|
T Consensus      1138 ------s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~s~~~~---------~Hs----------f~ed~~vkF 1192 (1516)
T KOG1832|consen 1138 ------SVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDASSTGGP---------RHS----------FDEDKAVKF 1192 (1516)
T ss_pred             ------cccccccccccccccCCcceeeeeccccCchHHHhccccccCc---------ccc----------ccccceeeh
Confidence                  3457999999999999998777655433  4678998652211         111          134578888


Q ss_pred             CCCCCeEEEEeCCCeEEEEcCCC-cceee-cc---cccCCeEEEEEccCCCEEEEEecCCcEEEEeCCCCceeEEeeecc
Q psy12697        289 NNNGSFLATGSYDGYARIWTSDG-SLKST-LG---QHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHS  363 (602)
Q Consensus       289 ~~~~~~l~~~~~dg~i~i~~~~~-~~~~~-~~---~~~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~  363 (602)
                      +.....-+.|+......+||++. ....+ +.   .....-++..|+|+...++   .||  .+||++..+.+..+....
T Consensus      1193 sn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIl---ndG--vLWDvR~~~aIh~FD~ft 1267 (1516)
T KOG1832|consen 1193 SNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLIL---NDG--VLWDVRIPEAIHRFDQFT 1267 (1516)
T ss_pred             hhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEe---eCc--eeeeeccHHHHhhhhhhe
Confidence            88766667777778899999873 22222 21   1222236788999988776   354  689999887776665444


Q ss_pred             CCeeeeeccCCCe-EEEeeCCCeEEEEEcCCCceeeEeccCCCCeEEEEECCCCCEEEE
Q psy12697        364 APALDVDWQSNTS-FASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLAS  421 (602)
Q Consensus       364 ~~~~~~~~~~~~~-~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~  421 (602)
                       .-..-.|+|++. ++.-+     .|||+++.+.++....-.  -..+.|+..|..+..
T Consensus      1268 -~~~~G~FHP~g~eVIINS-----EIwD~RTF~lLh~VP~Ld--qc~VtFNstG~VmYa 1318 (1516)
T KOG1832|consen 1268 -DYGGGGFHPSGNEVIINS-----EIWDMRTFKLLHSVPSLD--QCAVTFNSTGDVMYA 1318 (1516)
T ss_pred             -ecccccccCCCceEEeec-----hhhhhHHHHHHhcCcccc--ceEEEeccCccchhh
Confidence             223345667654 33332     589999988776554322  356778887766543

>KOG1645|consensus

Probab=98.69  E-value=5.3e-06  Score=75.02  Aligned_cols=245  Identities=13%  Similarity=0.108  Sum_probs=132.9

Q ss_pred             CCCCceeEEeeCCCCC-eEEEEeCCCeEEEEcCCCccee-ecccccCCeEEEEEccCC-CEEEEEecCCcEEEEeCCCCc
Q psy12697        278 PSNKDVTSLDWNNNGS-FLATGSYDGYARIWTSDGSLKS-TLGQHKGPIFALKWNKRG-NYILSAGVDKTTIIWDAASGQ  354 (602)
Q Consensus       278 ~~~~~i~~~~~~~~~~-~l~~~~~dg~i~i~~~~~~~~~-~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~~wd~~~~~  354 (602)
                      .+...|..++|+|..+ ++..++.+..|.+.|++..... .+..+ ..+++++|.-+. ++|.+|...|.|.+||++..+
T Consensus       191 ~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~~~  269 (463)
T KOG1645|consen  191 GEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQPE  269 (463)
T ss_pred             ccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceEEEEEccCCC
Confidence            3567899999999776 7888999999999999865544 44444 889999998765 567778889999999998754


Q ss_pred             eeE-Ee--eeccCCeeeeeccCC------CeEEEeeCCCeEEEEEcCC--CceeeEec-cCCCCeEEEEECCCCCEEEEE
Q psy12697        355 CEQ-QF--SFHSAPALDVDWQSN------TSFASCSTDQHIHVCKLHS--DKPVKSFE-GHTNEVNAIKWDPQGLLLASC  422 (602)
Q Consensus       355 ~~~-~~--~~~~~~~~~~~~~~~------~~~~~~~~~~~i~i~d~~~--~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~  422 (602)
                      -.. .+  .....++..++..+.      +.++++... .+..|++.-  +.+...++ +..+...++.+++..+.++..
T Consensus       270 ~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt-~l~f~ei~~s~~~~p~vlele~pG~cismqy~~~snh~l~t  348 (463)
T KOG1645|consen  270 GPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALT-VLQFYEIVFSAECLPCVLELEPPGICISMQYHGVSNHLLLT  348 (463)
T ss_pred             chHhhhhhhhccCcceeecccCccccccccceEEeeeh-hhhhhhhhccccCCCcccccCCCcceeeeeecCccceEEEE
Confidence            321 11  122334444443332      223332221 123343321  11212111 123445566666644444333


Q ss_pred             ECCC-------eEEE-EeCCCCeeeEeeccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCE
Q psy12697        423 SDDM-------TLKI-WSLDKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNY  494 (602)
Q Consensus       423 ~~dg-------~i~i-wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~  494 (602)
                      ....       .|-. -|-.+|.++...+.-.-......                          -..-..+.-.++.++
T Consensus       349 yRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~k--------------------------l~t~~ai~~~~~nn~  402 (463)
T KOG1645|consen  349 YRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTK--------------------------LSTTQAIRAVEDNNY  402 (463)
T ss_pred             ecCCCCCccceeeeeeeccccCceeeeecccccCCcccc--------------------------cccccceeccccccE
Confidence            2221       0000 01111211111110000000000                          000011222334455


Q ss_pred             EE-EEeCCCeEEEEeCCCCceeeeecccCCCeeEeeecC-Cc-eEEEeeCCCcEEEeecC
Q psy12697        495 IL-SAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQS-NT-SFASCSTDQHIHVCKLH  551 (602)
Q Consensus       495 l~-s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~-~~-~l~~~~~d~~i~iw~~~  551 (602)
                      ++ .++..+.+.+||..+++.++++.. +.+|.+++... ++ -++..-.|..++||..+
T Consensus       403 iv~~gd~tn~lil~D~~s~evvQ~l~~-~epv~Dicp~~~n~~syLa~LTd~~v~Iyk~e  461 (463)
T KOG1645|consen  403 IVVVGDSTNELILQDPHSFEVVQTLAL-SEPVLDICPNDTNGSSYLALLTDDRVHIYKNE  461 (463)
T ss_pred             EEEecCCcceeEEeccchhheeeeccc-CcceeecceeecCCcchhhheecceEEEEecC
Confidence            55 455668899999999999999884 47888887644 34 44445567788888743

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.69  E-value=5.9e-08  Score=59.00  Aligned_cols=38  Identities=45%  Similarity=0.938  Sum_probs=36.2

Q ss_pred             ceeeEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEe
Q psy12697        395 KPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWS  432 (602)
Q Consensus       395 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd  432 (602)
                      +++..+.+|.+.|++++|+|++.+|++++.|+.|++||
T Consensus         2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            56788999999999999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG1275|consensus

Probab=98.69  E-value=4.8e-07  Score=90.02  Aligned_cols=181  Identities=14%  Similarity=0.182  Sum_probs=134.5

Q ss_pred             CCCEEEEEecCCcEEEEeCCCCceeEEeeeccCCeeeeeccCCCeEEEeeCCCeEEEEEcCCCceeeEeccCCCCeEEEE
Q psy12697        332 RGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIK  411 (602)
Q Consensus       332 ~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~  411 (602)
                      ++..++-|+....+..+|+++.+..+........+.-+. ..+..+.+|...|+|.+-|.++.+.++++.+|.+.|..+.
T Consensus       146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR-~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfD  224 (1118)
T KOG1275|consen  146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMR-YNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFD  224 (1118)
T ss_pred             CCcceeecchhhheeeeecccceeeeeeeccCCceEEEE-ecCcEEEeecccceEEeecCCcCceeeeeeccccceeeee
Confidence            345677788888899999999888877776665544443 3456688899999999999999999999999999998765


Q ss_pred             ECCCCCEEEEEEC---------CCeEEEEeCCCCeeeEeeccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCC
Q psy12697        412 WDPQGLLLASCSD---------DMTLKIWSLDKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGP  482 (602)
Q Consensus       412 ~~~~~~~l~~~~~---------dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  482 (602)
                      .  .|+.|++++.         |.-|+|||++..+.+..+.-+.++ .-+.|.|.-                        
T Consensus       225 v--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P-~flrf~Psl------------------------  277 (1118)
T KOG1275|consen  225 V--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP-QFLRFHPSL------------------------  277 (1118)
T ss_pred             c--cCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCc-hhhhhcccc------------------------
Confidence            5  6889999986         445899999987766555443332 223333322                        


Q ss_pred             eEEEEEccCCCEEEEEeCCCeEEEEeCC---CC-ceeeeecccCCCeeEeeecCCc-eEEEeeCCCcEEEee
Q psy12697        483 IFALKWNKRGNYILSAGVDKTTIIWDAA---SG-QCEQQFSFHSAPALDVDWQSNT-SFASCSTDQHIHVCK  549 (602)
Q Consensus       483 v~~i~~s~~~~~l~s~~~dg~i~iwd~~---~~-~~~~~~~~~~~~v~~~~~s~~~-~l~~~~~d~~i~iw~  549 (602)
                               -..+++++..|...+-|..   +. .-+..+....+.+..+++|+++ .++.|..+|.|.+|.
T Consensus       278 ---------~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa  340 (1118)
T KOG1275|consen  278 ---------TTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA  340 (1118)
T ss_pred             ---------cceEEEEecccceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence                     2458888889999998833   22 1123333344559999999999 999999999999998

>KOG2695|consensus

Probab=98.68  E-value=1.1e-07  Score=83.74  Aligned_cols=149  Identities=16%  Similarity=0.226  Sum_probs=116.5

Q ss_pred             EEEeCCCeEEEEcCCCcceeecccccCCeEEEEEccCCCEEEEEecCCcEEEEeCCCC----ceeEEeeeccCCeeeeec
Q psy12697        296 ATGSYDGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASG----QCEQQFSFHSAPALDVDW  371 (602)
Q Consensus       296 ~~~~~dg~i~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~~----~~~~~~~~~~~~~~~~~~  371 (602)
                      ++.+.+..+.+-++.+.....+. ..+.|.++.|...++.+..|+..|.|..+|++.+    ......-.|...++++..
T Consensus       228 fs~G~sqqv~L~nvetg~~qsf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rlyh~Ssvtslq~  306 (425)
T KOG2695|consen  228 FSVGLSQQVLLTNVETGHQQSFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLYHDSSVTSLQI  306 (425)
T ss_pred             ecccccceeEEEEeecccccccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEEcCcchhhhhh
Confidence            44455667888888877766666 6778999999998999999999999999999876    222333457777887766


Q ss_pred             cC--CCeEEEeeCCCeEEEEEcCCCce---eeEeccCCCCeEE--EEECCCCCEEEEEECCCeEEEEeCCCCeeeEeecc
Q psy12697        372 QS--NTSFASCSTDQHIHVCKLHSDKP---VKSFEGHTNEVNA--IKWDPQGLLLASCSDDMTLKIWSLDKDNCVHDLQA  444 (602)
Q Consensus       372 ~~--~~~~~~~~~~~~i~i~d~~~~~~---~~~~~~~~~~i~~--~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~  444 (602)
                      ..  +..+++.+.+|.|.+||++--+.   +.++.+|.+.-.-  +-+.+....++++++|...|||.++.+..+.++..
T Consensus       307 Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf  386 (425)
T KOG2695|consen  307 LQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPF  386 (425)
T ss_pred             hccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceeeccCC
Confidence            54  46688888999999999987666   8999999764333  34556777889999999999999999998888764


Q ss_pred             c
Q psy12697        445 H  445 (602)
Q Consensus       445 ~  445 (602)
                      .
T Consensus       387 ~  387 (425)
T KOG2695|consen  387 P  387 (425)
T ss_pred             C
Confidence            3

>KOG1832|consensus

Probab=98.67  E-value=1.9e-08  Score=99.16  Aligned_cols=205  Identities=13%  Similarity=0.137  Sum_probs=147.5

Q ss_pred             ceeecccccCCeEEEEEccCCCEEEEEecCCcEEEEeCCCCceeEEeeeccCCeeeeeccCCCe-EEE-eeCCC-eEEEE
Q psy12697        313 LKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTS-FAS-CSTDQ-HIHVC  389 (602)
Q Consensus       313 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~-~i~i~  389 (602)
                      ....+..|....+|++|+-+.++|+.|+..|.|+++++.+|........|...++.+..+.++. .++ .+... -..+|
T Consensus      1093 ~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW 1172 (1516)
T KOG1832|consen 1093 SWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALW 1172 (1516)
T ss_pred             cchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHHh
Confidence            4456677888999999999999999999999999999999999999999999999998877754 333 33333 56789


Q ss_pred             EcCC-CceeeEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeeeEeeccccccEEEEEECCCCCCCCCCCcce
Q psy12697        390 KLHS-DKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSL  468 (602)
Q Consensus       390 d~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~  468 (602)
                      ++.+ +.+.+++.    .-.++.|+...+.-+.|.......+||+.++.++.++-....                     
T Consensus      1173 ~~~s~~~~~Hsf~----ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~--------------------- 1227 (1516)
T KOG1832|consen 1173 DASSTGGPRHSFD----EDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTV--------------------- 1227 (1516)
T ss_pred             ccccccCcccccc----ccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcch---------------------
Confidence            8864 34445544    345788887655556666666789999999877766321100                     


Q ss_pred             eeeeeeccCCccCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeeecccCCCeeEeeecCCc-eEEEeeCCCcEEE
Q psy12697        469 IFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNT-SFASCSTDQHIHV  547 (602)
Q Consensus       469 ~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~-~l~~~~~d~~i~i  547 (602)
                               +....-++..|||+.++++   .||  .+||++..+.++.|...+. -..-.|+|.| .++.-+     .|
T Consensus      1228 ---------~~~y~~n~a~FsP~D~LIl---ndG--vLWDvR~~~aIh~FD~ft~-~~~G~FHP~g~eVIINS-----EI 1287 (1516)
T KOG1832|consen 1228 ---------TSSYSNNLAHFSPCDTLIL---NDG--VLWDVRIPEAIHRFDQFTD-YGGGGFHPSGNEVIINS-----EI 1287 (1516)
T ss_pred             ---------hhhhhccccccCCCcceEe---eCc--eeeeeccHHHHhhhhhhee-cccccccCCCceEEeec-----hh
Confidence                     0111125677888888776   465  5899998888887775542 2234699999 666544     58


Q ss_pred             eecCCCCceeeeecc
Q psy12697        548 CKLHSDKPVKSFEGH  562 (602)
Q Consensus       548 w~~~~~~~~~~~~~~  562 (602)
                      ||+++-+.++..+..
T Consensus      1288 wD~RTF~lLh~VP~L 1302 (1516)
T KOG1832|consen 1288 WDMRTFKLLHSVPSL 1302 (1516)
T ss_pred             hhhHHHHHHhcCccc
Confidence            999988877666543

>KOG2066|consensus

Probab=98.66  E-value=3.1e-06  Score=83.38  Aligned_cols=154  Identities=19%  Similarity=0.305  Sum_probs=117.2

Q ss_pred             CCceeEEeeCCCCCeEEEEeCCCeEEEEcCCCcceeecccccCCeEEEEEccCCCEEEEEecCCcEEEEeCCCCceeEEe
Q psy12697        280 NKDVTSLDWNNNGSFLATGSYDGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQF  359 (602)
Q Consensus       280 ~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~  359 (602)
                      ...++|++++  +++|+.|+.+|.|++++.++.. .+...|...      ..+|.++++|+.||+|.+-.+-+.+...++
T Consensus        39 ~D~is~~av~--~~~~~~GtH~g~v~~~~~~~~~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~~  109 (846)
T KOG2066|consen   39 NDAISCCAVH--DKFFALGTHRGAVYLTTCQGNP-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQY  109 (846)
T ss_pred             hhHHHHHHhh--cceeeeccccceEEEEecCCcc-ccccccccc------ccCCceEEEecCCCcEEEeeccCCccceeE
Confidence            3556777765  5689999999999999998877 444445443      668999999999999999998888777666


Q ss_pred             eeccCCeeeeeccCC------CeEEEeeCCCeEEEEEcCC--CceeeEeccCCCCeEEEEECCCCCEEEEEECCCeEEEE
Q psy12697        360 SFHSAPALDVDWQSN------TSFASCSTDQHIHVCKLHS--DKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIW  431 (602)
Q Consensus       360 ~~~~~~~~~~~~~~~------~~~~~~~~~~~i~i~d~~~--~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw  431 (602)
                      .. ..++.++++.|+      +.+++|+..| +.++.-+-  .+....+....++|.++.|.  |.++|-++++| |++|
T Consensus       110 df-~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~--g~lIAWand~G-v~vy  184 (846)
T KOG2066|consen  110 DF-KRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR--GNLIAWANDDG-VKVY  184 (846)
T ss_pred             ec-CCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEec--CcEEEEecCCC-cEEE
Confidence            54 357788888887      5699999998 77765331  11112455567889999996  67999998888 9999


Q ss_pred             eCCCCeeeEeeccccc
Q psy12697        432 SLDKDNCVHDLQAHNK  447 (602)
Q Consensus       432 d~~~~~~~~~~~~~~~  447 (602)
                      |+.+++.+..++....
T Consensus       185 d~~~~~~l~~i~~p~~  200 (846)
T KOG2066|consen  185 DTPTRQRLTNIPPPSQ  200 (846)
T ss_pred             eccccceeeccCCCCC
Confidence            9999887777665443

>KOG3617|consensus

Probab=98.65  E-value=5.3e-06  Score=82.12  Aligned_cols=302  Identities=13%  Similarity=0.157  Sum_probs=162.2

Q ss_pred             EEEECCCCCeEEEee----CCceEEEEecCCceeEEEeeccCceEEEEeCCCCCCCCCCCCccccccccccCCc-ceEee
Q psy12697        145 SVAFSPDGKFLASGS----FDKCVHIWSARTGQLVHSYKGTGGIFEVCWNSRGTPPNPPESMEVDASIEIPQSK-ATKLI  219 (602)
Q Consensus       145 ~~~~s~d~~~l~s~~----~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~  219 (602)
                      -..|+|...++|.++    ..|+|.||- ++|++.+...-+-.+.++||.|..-.+...-.......+...... .....
T Consensus        20 i~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~~   98 (1416)
T KOG3617|consen   20 ISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVTYPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVVE   98 (1416)
T ss_pred             ccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCcccccceehhhhccChHHHHHhhccccceeEEEecCCceeeeecc
Confidence            357888888888876    458898884 677766555555556778998876554443333333322222222 23345


Q ss_pred             CCCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEeeCCCCC------
Q psy12697        220 GHESEVFICAWNPVKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGS------  293 (602)
Q Consensus       220 ~h~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~------  293 (602)
                      .|..+|..+.|+++|..++++..-|.+.+|............+.   .|.       ....-...|...++++.      
T Consensus        99 th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~~g~~q~~~~~---~he-------l~~~ltl~cfRL~~~~Ee~~~la  168 (1416)
T KOG3617|consen   99 THPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDVIGEIQTSNIM---QHE-------LNDQLTLWCFRLSYDREEKFKLA  168 (1416)
T ss_pred             CCCCCceeEEecCCCCeEEEcCCCceeEEEEeeeccccccchhh---hhH-------hhceeeEEEEecCCChHHhhhhh
Confidence            69999999999999999999999999999998743322211110   000       00011233444555532      


Q ss_pred             eEEEEeCCCeEE-EEcCCCcceeecccccCCeEEEEEccCCCEEEEEecCCcEEEEeCCCCceeEEeeeccCCeeeeecc
Q psy12697        294 FLATGSYDGYAR-IWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQ  372 (602)
Q Consensus       294 ~l~~~~~dg~i~-i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~  372 (602)
                      ..++.+.+..+- .++-+......-..|.+       .|+|..++.++.+|+|.-.|- .|++.......+.  ..+-|.
T Consensus       169 KaaVtgDe~alD~~fnwk~~~a~rs~~ksg-------v~~g~~F~~~~~~GtVyyvdq-~g~~~~V~k~dS~--vQmLf~  238 (1416)
T KOG3617|consen  169 KAAVTGDESALDEPFNWKESLAERSDEKSG-------VPKGTEFLFAGKSGTVYYVDQ-NGRQRTVHKLDSE--VQMLFM  238 (1416)
T ss_pred             hhhccCchhhhcccccCccchhhccccccC-------CCCCcEEEEEcCCceEEEEcC-CCcEEEEEEccch--HHHHHh
Confidence            122333332221 22222111111111111       477888888999999888873 3444333322211  111111


Q ss_pred             CC-CeEEE------------------------------eeCCCeEEEEEcCCCc--eeeEe-ccCCCCeEEEEECCCCCE
Q psy12697        373 SN-TSFAS------------------------------CSTDQHIHVCKLHSDK--PVKSF-EGHTNEVNAIKWDPQGLL  418 (602)
Q Consensus       373 ~~-~~~~~------------------------------~~~~~~i~i~d~~~~~--~~~~~-~~~~~~i~~~~~~~~~~~  418 (602)
                      +. ..+++                              |+..|.|.+-... |-  +..++ ......++|++++..+..
T Consensus       239 ~~~eai~~i~e~lr~~l~~v~~~G~~ee~~~vk~sgk~GgrqGgiA~sEss-GvLr~~eKyg~e~ge~~~c~cY~~~~~~  317 (1416)
T KOG3617|consen  239 GYCEAISIIIEFLRDCLIFVLAKGTSEERCAVKVSGKLGGRQGGIACSESS-GVLRKSEKYGLELGEGILCMCYGEKEIR  317 (1416)
T ss_pred             cccceEEEEeeeceeeEEEecCCCchHHhhhhhhccccCCccCcccccccc-ccccCCcchhhhcCCceEEEEEeccceE
Confidence            11 00111                              1111111111100 00  00011 012456999999999999


Q ss_pred             EEEEECCCeEEEEeCCCC-------eeeEeec---cccccEEEEEECCCCCCCCCCCcce
Q psy12697        419 LASCSDDMTLKIWSLDKD-------NCVHDLQ---AHNKEIYTIKWSPTGPETSNPNMSL  468 (602)
Q Consensus       419 l~~~~~dg~i~iwd~~~~-------~~~~~~~---~~~~~i~~~~~~~~~~~~~~~~~~~  468 (602)
                      |+.|...|.+.+|--...       .-..+++   ...+.|+.+.|.|-.+..+......
T Consensus       318 l~agt~~gnv~~w~~v~~~f~g~p~~d~w~l~~~~e~~g~I~~i~Wg~~k~~~avn~~~~  377 (1416)
T KOG3617|consen  318 LWAGTKEGNVTIWLDVNKGFQGDPTIDVWTLNGKRESLGKISLIRWGPIKSTAAVNTEED  377 (1416)
T ss_pred             EEecccCCcEEEeeecCccccCCCCcceEEecCchhhccceEEEEeccccchhhhhhhhh
Confidence            999999999999963321       2233333   3456899999999665544443333

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=98.58  E-value=1.6e-05  Score=72.17  Aligned_cols=270  Identities=14%  Similarity=0.136  Sum_probs=154.0

Q ss_pred             cceeeeecccceeeeeeeccCCceEEEEECCCCCeEEEee----------CCceEEEEecCCceeEEEeeccCceEEEEe
Q psy12697        120 LTLPLWDVERGECLNTLTRHTEPVYSVAFSPDGKFLASGS----------FDKCVHIWSARTGQLVHSYKGTGGIFEVCW  189 (602)
Q Consensus       120 ~~i~vwd~~~~~~~~~l~~h~~~V~~~~~s~d~~~l~s~~----------~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~  189 (602)
                      ..+.|.|..+++.+..+..--.  -.+..|||++.+++++          ....|.+||.++......+..+....    
T Consensus        17 ~rv~viD~d~~k~lGmi~~g~~--~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R----   90 (342)
T PF06433_consen   17 SRVYVIDADSGKLLGMIDTGFL--GNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPR----   90 (342)
T ss_dssp             EEEEEEETTTTEEEEEEEEESS--EEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B----
T ss_pred             ceEEEEECCCCcEEEEeecccC--CceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcch----
Confidence            3689999999998888864322  2367899999888754          34679999999988877654332100    


Q ss_pred             CCCCCCCCCCCCccccccccccCCcceEeeCCCcceEEEEEcCCCCEEEEee--CCCcEEEEeCCCCCCCCCccceEEEE
Q psy12697        190 NSRGTPPNPPESMEVDASIEIPQSKATKLIGHESEVFICAWNPVKDFLASGS--GDSTARIWDMTDSTKKDPKELQIVLR  267 (602)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~s~~--~dg~i~iw~~~~~~~~~~~~~~~~~~  267 (602)
                                                . +..  ......+++.|+++++...  -...|.|-|+...+........    
T Consensus        91 --------------------------~-~~~--~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~P----  137 (342)
T PF06433_consen   91 --------------------------A-QVV--PYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTP----  137 (342)
T ss_dssp             -----------------------------BS----GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGT----
T ss_pred             --------------------------h-eec--ccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCC----
Confidence                                      0 000  1122346777787776643  2456888888766542211111    


Q ss_pred             EEecCCCcccCCCCceeEEeeCC-CCCeEEEEeCCCeEEEEcCC--Ccceee----cccccCCe-EEEEEccCCCEEEEE
Q psy12697        268 HCISKGGTEVPSNKDVTSLDWNN-NGSFLATGSYDGYARIWTSD--GSLKST----LGQHKGPI-FALKWNKRGNYILSA  339 (602)
Q Consensus       268 ~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~~~~--~~~~~~----~~~~~~~i-~~~~~~~~~~~l~~~  339 (602)
                                   +   |.-.-| ..+-|.+-|.||.+....++  |+....    +.....++ ..-.+...+..++-.
T Consensus       138 -------------G---C~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~  201 (342)
T PF06433_consen  138 -------------G---CWLIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFV  201 (342)
T ss_dssp             -------------S---EEEEEEEETTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEE
T ss_pred             -------------C---EEEEEecCCCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCCCeEEEE
Confidence                         1   111122 12357778888888777654  443322    11122222 233445555666667


Q ss_pred             ecCCcEEEEeCCCCceeE--Eeeecc----------CCeeeeeccC-CCeEEEeeCC----------CeEEEEEcCCCce
Q psy12697        340 GVDKTTIIWDAASGQCEQ--QFSFHS----------APALDVDWQS-NTSFASCSTD----------QHIHVCKLHSDKP  396 (602)
Q Consensus       340 ~~dg~i~~wd~~~~~~~~--~~~~~~----------~~~~~~~~~~-~~~~~~~~~~----------~~i~i~d~~~~~~  396 (602)
                      +.+|.|+--|+.......  .+....          +.-.-+++++ .+.+.+-...          ..|.++|+.+++.
T Consensus       202 Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~kr  281 (342)
T PF06433_consen  202 SYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKR  281 (342)
T ss_dssp             BTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEE
T ss_pred             ecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeE
Confidence            889999888887654322  222111          1111233332 2333332211          1588889999999


Q ss_pred             eeEeccCCCCeEEEEECCCCC-EEEEEE-CCCeEEEEeCCCCeeeEeeccc
Q psy12697        397 VKSFEGHTNEVNAIKWDPQGL-LLASCS-DDMTLKIWSLDKDNCVHDLQAH  445 (602)
Q Consensus       397 ~~~~~~~~~~i~~~~~~~~~~-~l~~~~-~dg~i~iwd~~~~~~~~~~~~~  445 (602)
                      +..+... .++.+|+++.+.+ +|++.+ .++.+.+||..+++.++++..-
T Consensus       282 v~Ri~l~-~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~l  331 (342)
T PF06433_consen  282 VARIPLE-HPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQL  331 (342)
T ss_dssp             EEEEEEE-EEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE---
T ss_pred             EEEEeCC-CccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhcc
Confidence            8888742 3577999998766 555544 5789999999999999888654

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=98.55  E-value=0.00015  Score=72.96  Aligned_cols=289  Identities=13%  Similarity=0.106  Sum_probs=158.9

Q ss_pred             CCeEEEeeCCceEEEEecCCceeEEEeeccCceEEEEeCCCCCCCCCCCCccccccccccCCcceEeeCCCcceE--EEE
Q psy12697        152 GKFLASGSFDKCVHIWSARTGQLVHSYKGTGGIFEVCWNSRGTPPNPPESMEVDASIEIPQSKATKLIGHESEVF--ICA  229 (602)
Q Consensus       152 ~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~v~--~~~  229 (602)
                      +..+..++.++.|.-.|..+|+.+-+++......                                  .....+.  .+.
T Consensus        61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~----------------------------------~~~~~~~~~g~~  106 (488)
T cd00216          61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPAD----------------------------------RGCCDVVNRGVA  106 (488)
T ss_pred             CCEEEEeCCCCcEEEEECCCChhhceeCCCCCcc----------------------------------ccccccccCCcE
Confidence            4556677788999999999998876554321100                                  0000000  011


Q ss_pred             EcCCCCEEEEeeCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEeeCC--CCCeEEEEe--------
Q psy12697        230 WNPVKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNN--NGSFLATGS--------  299 (602)
Q Consensus       230 ~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~l~~~~--------  299 (602)
                      .. ++..++.++.++.|.-+|.++++............              .-..+.-+|  .+..+++++        
T Consensus       107 ~~-~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~--------------~~~~i~ssP~v~~~~v~vg~~~~~~~~~  171 (488)
T cd00216         107 YW-DPRKVFFGTFDGRLVALDAETGKQVWKFGNNDQVP--------------PGYTMTGAPTIVKKLVIIGSSGAEFFAC  171 (488)
T ss_pred             Ec-cCCeEEEecCCCeEEEEECCCCCEeeeecCCCCcC--------------cceEecCCCEEECCEEEEeccccccccC
Confidence            11 12577778888999999998887654332211000              000011111  123444443        


Q ss_pred             -CCCeEEEEcCC-CcceeecccccC--------------------Ce-EEEEEccCCCEEEEEecCC-------------
Q psy12697        300 -YDGYARIWTSD-GSLKSTLGQHKG--------------------PI-FALKWNKRGNYILSAGVDK-------------  343 (602)
Q Consensus       300 -~dg~i~i~~~~-~~~~~~~~~~~~--------------------~i-~~~~~~~~~~~l~~~~~dg-------------  343 (602)
                       .+|.+..+|.. |+..-.......                    .+ ....+.+.+..++.++.++             
T Consensus       172 ~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~  251 (488)
T cd00216         172 GVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGD  251 (488)
T ss_pred             CCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCC
Confidence             35677777765 444433322110                    01 1234445566777777665             


Q ss_pred             -----cEEEEeCCCCceeEEeeeccCCeee--e----ec-----cCC---CeEEEeeCCCeEEEEEcCCCceeeEeccCC
Q psy12697        344 -----TTIIWDAASGQCEQQFSFHSAPALD--V----DW-----QSN---TSFASCSTDQHIHVCKLHSDKPVKSFEGHT  404 (602)
Q Consensus       344 -----~i~~wd~~~~~~~~~~~~~~~~~~~--~----~~-----~~~---~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~  404 (602)
                           .+.-+|..+|+....++........  .    ..     ...   ..+++++.+|.++.+|.++++.+-..... 
T Consensus       252 ~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~-  330 (488)
T cd00216         252 NLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEV-  330 (488)
T ss_pred             CCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEee-
Confidence                 7999999999999887543221110  0    00     011   24777888999999999999988765421 


Q ss_pred             CCeEEEEECCCCCEEEEE------------------ECCCeEEEEeCCCCeeeEeeccccccEEEEEECCCCCCCCCCCc
Q psy12697        405 NEVNAIKWDPQGLLLASC------------------SDDMTLKIWSLDKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNM  466 (602)
Q Consensus       405 ~~i~~~~~~~~~~~l~~~------------------~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  466 (602)
                        ...++.+|  ..+..+                  ..+|.+.-.|+.+++.+.+.......  .. +.           
T Consensus       331 --~~~~~~~~--~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~--~~-~~-----------  392 (488)
T cd00216         331 --EQPMAYDP--GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIR--DS-WN-----------  392 (488)
T ss_pred             --ccccccCC--ceEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccc--cc-cc-----------
Confidence              11234444  233332                  23577888888888877665432100  00 00           


Q ss_pred             ceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeeecc
Q psy12697        467 SLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSF  520 (602)
Q Consensus       467 ~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~  520 (602)
                               ..   .+...-...-.+.+|+.++.||.|+.+|..+|+.+.+++.
T Consensus       393 ---------~g---~~~~~~~~~~~g~~v~~g~~dG~l~ald~~tG~~lW~~~~  434 (488)
T cd00216         393 ---------IG---FPHWGGSLATAGNLVFAGAADGYFRAFDATTGKELWKFRT  434 (488)
T ss_pred             ---------cC---CcccCcceEecCCeEEEECCCCeEEEEECCCCceeeEEEC
Confidence                     00   0000000011456788889999999999999999987764

The alignment model contains an 8-bladed beta-propeller.

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=98.52  E-value=0.00031  Score=65.38  Aligned_cols=276  Identities=13%  Similarity=0.121  Sum_probs=127.5

Q ss_pred             EEeeCCCCCeEEEEeC-CC--eEEEEcCCCcceeecccccC-CeEEEEEccCCCEEEEEecCCcEEEEeCCCCceeEEee
Q psy12697        285 SLDWNNNGSFLATGSY-DG--YARIWTSDGSLKSTLGQHKG-PIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFS  360 (602)
Q Consensus       285 ~~~~~~~~~~l~~~~~-dg--~i~i~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~  360 (602)
                      .=+|.++|+.|+.++. +|  .+.+.|+....+..+....+ ......++|+++.++-......++-.|+.+.+....+.
T Consensus        40 ~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~  119 (386)
T PF14583_consen   40 QNCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYE  119 (386)
T ss_dssp             S--B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE
T ss_pred             CCCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEE
Confidence            3457888977666554 54  56667787777777665432 23356678888888776666789999999998777776


Q ss_pred             eccCCeeeeecc--CCCeEEEeeC-----------------------CCeEEEEEcCCCceeeEeccCCCCeEEEEECCC
Q psy12697        361 FHSAPALDVDWQ--SNTSFASCST-----------------------DQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQ  415 (602)
Q Consensus       361 ~~~~~~~~~~~~--~~~~~~~~~~-----------------------~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~  415 (602)
                      ..........|.  .+...+++..                       ...|.-.|+.+++....+. ....+..+.|+|.
T Consensus       120 ~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~-~~~wlgH~~fsP~  198 (386)
T PF14583_consen  120 VPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFE-DTDWLGHVQFSPT  198 (386)
T ss_dssp             --TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEE-ESS-EEEEEEETT
T ss_pred             CCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEe-cCccccCcccCCC
Confidence            666655444443  3344443321                       2245566777776544443 4566788999996


Q ss_pred             CCEEEEEECCC-----eEEEEeCCC-CeeeEeeccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEc
Q psy12697        416 GLLLASCSDDM-----TLKIWSLDK-DNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWN  489 (602)
Q Consensus       416 ~~~l~~~~~dg-----~i~iwd~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s  489 (602)
                      ...++.-+.+|     .-|||-+++ +.....+..+..                                ...+..=-|.
T Consensus       199 dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~--------------------------------~e~~gHEfw~  246 (386)
T PF14583_consen  199 DPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRME--------------------------------GESVGHEFWV  246 (386)
T ss_dssp             EEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---T--------------------------------TEEEEEEEE-
T ss_pred             CCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCC--------------------------------Cccccccccc
Confidence            55555554433     135665543 222222222211                                1122333456


Q ss_pred             cCCCEEEEE-----eCCCeEEEEeCCCCceeeeecccCCCeeEeeecCCceEEEeeC-CC----------------cEEE
Q psy12697        490 KRGNYILSA-----GVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTSFASCST-DQ----------------HIHV  547 (602)
Q Consensus       490 ~~~~~l~s~-----~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~l~~~~~-d~----------------~i~i  547 (602)
                      |||+.|.--     +.+..|.-+|+.+++......  ......+.-++||.|++|.. |.                -|++
T Consensus       247 ~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~~--~p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~  324 (386)
T PF14583_consen  247 PDGSTIWYDSYTPGGQDFWIAGYDPDTGERRRLME--MPWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYL  324 (386)
T ss_dssp             TTSS-EEEEEEETTT--EEEEEE-TTT--EEEEEE--E-SEEEEEE-TTSSEEEEEE-------------------EEEE
T ss_pred             CCCCEEEEEeecCCCCceEEEeeCCCCCCceEEEe--CCceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEE
Confidence            666655432     234567777888876543322  22444566688986665533 22                3455


Q ss_pred             eecCCCCceeeeecccccceEEEEecCC--cEEEEEECCCCCeEEEecc-CCeE
Q psy12697        548 CKLHSDKPVKSFEGHTTGQLVHSYKGTG--GIFEVCWNSRGDKVGASAS-DGSV  598 (602)
Q Consensus       548 w~~~~~~~~~~~~~~~~~~~~~~~~~~~--~i~~l~~spdg~~l~~~~~-dg~v  598 (602)
                      ++++.++... +..|...  ...+.+..  .=....|||||++++..+. .|..
T Consensus       325 ~~~~~~~~~~-l~~h~~s--w~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~~G~~  375 (386)
T PF14583_consen  325 FDVEAGRFRK-LARHDTS--WKVLDGDRQVTHPHPSFSPDGKWVLFRSDMEGPP  375 (386)
T ss_dssp             EETTTTEEEE-EEE---------BTTBSSTT----EE-TTSSEEEEEE-TTSS-
T ss_pred             eccccCceee-eeeccCc--ceeecCCCccCCCCCccCCCCCEEEEECCCCCCc
Confidence            6665443321 1112110  01111111  1246789999998766554 5543

>PRK02888 nitrous-oxide reductase; Validated

Probab=98.51  E-value=6.5e-05  Score=74.17  Aligned_cols=180  Identities=11%  Similarity=0.068  Sum_probs=104.7

Q ss_pred             ccCCCEEEE-EecCCcEEEEeCCCCceeEEeeeccCCeeeeeccCCCeEE-Eee---C-CCeEEEEEcCCCceeeEeccC
Q psy12697        330 NKRGNYILS-AGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTSFA-SCS---T-DQHIHVCKLHSDKPVKSFEGH  403 (602)
Q Consensus       330 ~~~~~~l~~-~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---~-~~~i~i~d~~~~~~~~~~~~~  403 (602)
                      +|||+.+.. .-..+.+.+.|..+.+...++.... ....+.+++++..+ +.+   + ...+...+......+..+...
T Consensus       201 pnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vdg-npd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~  279 (635)
T PRK02888        201 PNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVDG-NLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIA  279 (635)
T ss_pred             CCCCCEeecccceeEEEEEEECccceEEEEEEeCC-CcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchH
Confidence            456654432 2234567778888877777766544 33455666665533 332   1 122333333222211111100


Q ss_pred             CCCeEEEEECCCCCEEEEEECCCeEEEEeCCC-----CeeeEeeccccccEEEEEECCCCCCCCCCCcceeeeeeeccCC
Q psy12697        404 TNEVNAIKWDPQGLLLASCSDDMTLKIWSLDK-----DNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQ  478 (602)
Q Consensus       404 ~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~-----~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  478 (602)
                      .  +  -++.++|++...  .++.|.+.|.++     .+.+..+..                                  
T Consensus       280 ~--i--ea~vkdGK~~~V--~gn~V~VID~~t~~~~~~~v~~yIPV----------------------------------  319 (635)
T PRK02888        280 R--I--EEAVKAGKFKTI--GGSKVPVVDGRKAANAGSALTRYVPV----------------------------------  319 (635)
T ss_pred             H--H--HHhhhCCCEEEE--CCCEEEEEECCccccCCcceEEEEEC----------------------------------
Confidence            0  0  123457777665  357899999887     233333321                                  


Q ss_pred             ccCCeEEEEEccCCCEEEEEe-CCCeEEEEeCCCCce------------eeeecccCCCeeEeeecCCc-eEEEeeCCCc
Q psy12697        479 HKGPIFALKWNKRGNYILSAG-VDKTTIIWDAASGQC------------EQQFSFHSAPALDVDWQSNT-SFASCSTDQH  544 (602)
Q Consensus       479 ~~~~v~~i~~s~~~~~l~s~~-~dg~i~iwd~~~~~~------------~~~~~~~~~~v~~~~~s~~~-~l~~~~~d~~  544 (602)
                       ......+.+||||+++++++ .+.+|.|.|+.+.+.            ..+...-. .-...+|.++| .+.+..-|..
T Consensus       320 -GKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGl-GPLHTaFDg~G~aytslf~dsq  397 (635)
T PRK02888        320 -PKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGL-GPLHTAFDGRGNAYTTLFLDSQ  397 (635)
T ss_pred             -CCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccCC-CcceEEECCCCCEEEeEeecce
Confidence             12335678888999877654 589999999987553            33333322 23457899999 7888889999


Q ss_pred             EEEeecCC
Q psy12697        545 IHVCKLHS  552 (602)
Q Consensus       545 i~iw~~~~  552 (602)
                      |..|++..
T Consensus       398 v~kwn~~~  405 (635)
T PRK02888        398 IVKWNIEA  405 (635)
T ss_pred             eEEEehHH
Confidence            99999876

>KOG3621|consensus

Probab=98.49  E-value=3.4e-05  Score=75.30  Aligned_cols=162  Identities=18%  Similarity=0.309  Sum_probs=108.1

Q ss_pred             cCCceEEEEECCCCCeEEEeeCCceEEEEecCCceeEEEeeccCceEEEEeCCCCCCCCCCCCccccccccccCCcceEe
Q psy12697        139 HTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKGTGGIFEVCWNSRGTPPNPPESMEVDASIEIPQSKATKL  218 (602)
Q Consensus       139 h~~~V~~~~~s~d~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  218 (602)
                      |...|.--+++..+++|+.|+.-|.+.+|+-..++....                                       ..
T Consensus        32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~---------------------------------------~~   72 (726)
T KOG3621|consen   32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKL---------------------------------------KN   72 (726)
T ss_pred             CcceEEEEEeecCCceEEEecccceEEEEecCchhhhcc---------------------------------------cc
Confidence            444555567778899999999999999999877765421                                       11


Q ss_pred             eCCCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEeeCCCCCeEEEE
Q psy12697        219 IGHESEVFICAWNPVKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFLATG  298 (602)
Q Consensus       219 ~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~  298 (602)
                      .+-...+..+..+++..++|+|+..|.|.++-+...........    .+      ....|...|+|++|++++..+++|
T Consensus        73 ~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~~----t~------~d~~~~~rVTal~Ws~~~~k~ysG  142 (726)
T KOG3621|consen   73 EGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDYV----TP------CDKSHKCRVTALEWSKNGMKLYSG  142 (726)
T ss_pred             cCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcceee----cc------ccccCCceEEEEEecccccEEeec
Confidence            12345566778899999999999999999998877433211111    11      112257899999999999999999


Q ss_pred             eCCCeEEEEcCCCc-----ceeecccccCCeEEEEEccCCCEEEEEecCCcEEEEeCCC
Q psy12697        299 SYDGYARIWTSDGS-----LKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAAS  352 (602)
Q Consensus       299 ~~dg~i~i~~~~~~-----~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~  352 (602)
                      ...|.|.+-.++..     ....+....+.|..+....  .+|+.++.-. -.+++++.
T Consensus       143 D~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~q--~~LLVStl~r-~~Lc~tE~  198 (726)
T KOG3621|consen  143 DSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYLQ--SYLLVSTLTR-CILCQTEA  198 (726)
T ss_pred             CCCceEEEEEechhhhhccccceeeccCcceEEeeccc--ceehHhhhhh-hheeecch
Confidence            99999998877652     1222333456677776653  2444433332 33444443

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=98.49  E-value=0.00024  Score=69.35  Aligned_cols=202  Identities=14%  Similarity=0.216  Sum_probs=110.6

Q ss_pred             eEEEEcCCCcceeecccccCCeEEEEEccCCCEEEEEecCCcEEEEeCCCCceeEEeee----ccCCe-----eeeeccC
Q psy12697        303 YARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSF----HSAPA-----LDVDWQS  373 (602)
Q Consensus       303 ~i~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~----~~~~~-----~~~~~~~  373 (602)
                      .|.+|+..|.++..+.-..+.|.++.|+.+ ..|++...||.++++|+. |+.  .+..    ....+     ....+..
T Consensus        62 ~I~iys~sG~ll~~i~w~~~~iv~~~wt~~-e~LvvV~~dG~v~vy~~~-G~~--~fsl~~~i~~~~v~e~~i~~~~~~~  137 (410)
T PF04841_consen   62 SIQIYSSSGKLLSSIPWDSGRIVGMGWTDD-EELVVVQSDGTVRVYDLF-GEF--QFSLGEEIEEEKVLECRIFAIWFYK  137 (410)
T ss_pred             EEEEECCCCCEeEEEEECCCCEEEEEECCC-CeEEEEEcCCEEEEEeCC-Cce--eechhhhccccCcccccccccccCC
Confidence            599999999988876655589999999985 557777789999999986 333  2211    11122     2222233


Q ss_pred             CCeEEEeeCCCeEEEEEcCCCc-eeeEeccCCCCeEE----------EEECCCCCEEEEEECCCeEEEEeCCCCeeeEee
Q psy12697        374 NTSFASCSTDQHIHVCKLHSDK-PVKSFEGHTNEVNA----------IKWDPQGLLLASCSDDMTLKIWSLDKDNCVHDL  442 (602)
Q Consensus       374 ~~~~~~~~~~~~i~i~d~~~~~-~~~~~~~~~~~i~~----------~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~  442 (602)
                      +| +++-..++.+++..-.... ..+.+..-......          ..++.+....+....++.+.+.+-...+.    
T Consensus       138 ~G-ivvLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~----  212 (410)
T PF04841_consen  138 NG-IVVLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQ----  212 (410)
T ss_pred             CC-EEEECCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccccc----
Confidence            44 4444455555554332221 11111100000000          11222222222222223333222111000    


Q ss_pred             ccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeeeccc-
Q psy12697        443 QAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFH-  521 (602)
Q Consensus       443 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-  521 (602)
                                                        ....+++..+++||+|+++|.-..+|.+.+.+..-.+.+..+... 
T Consensus       213 ----------------------------------i~~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~  258 (410)
T PF04841_consen  213 ----------------------------------IDSDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDS  258 (410)
T ss_pred             ----------------------------------ccCCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCc
Confidence                                              012357889999999999999999999999987766666666544 


Q ss_pred             CCCeeEeeecCCc-eEEEeeCCCcEEEee
Q psy12697        522 SAPALDVDWQSNT-SFASCSTDQHIHVCK  549 (602)
Q Consensus       522 ~~~v~~~~~s~~~-~l~~~~~d~~i~iw~  549 (602)
                      ......+.|.-+. .++.-  ...+.+..
T Consensus       259 ~~~p~~~~WCG~dav~l~~--~~~l~lvg  285 (410)
T PF04841_consen  259 KSPPKQMAWCGNDAVVLSW--EDELLLVG  285 (410)
T ss_pred             CCCCcEEEEECCCcEEEEe--CCEEEEEC
Confidence            3456677887665 32222  34455554

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>KOG4649|consensus

Probab=98.48  E-value=0.00016  Score=61.85  Aligned_cols=122  Identities=11%  Similarity=-0.002  Sum_probs=86.1

Q ss_pred             CEEEEEecCCcEEEEeCCCCceeEEeeeccCCeeeeeccCCCeEEEeeCCCeEEEEEcCCCceeeEeccCCCCeEEEEEC
Q psy12697        334 NYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWD  413 (602)
Q Consensus       334 ~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~  413 (602)
                      .+++.|+..+.+.-.|..+|......... ..+.+-+..-++.++.|..+|.+++.+.+++.....+.....-=.....+
T Consensus        24 T~v~igSHs~~~~avd~~sG~~~We~ilg-~RiE~sa~vvgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~~d  102 (354)
T KOG4649|consen   24 TLVVIGSHSGIVIAVDPQSGNLIWEAILG-VRIECSAIVVGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQCD  102 (354)
T ss_pred             eEEEEecCCceEEEecCCCCcEEeehhhC-ceeeeeeEEECCEEEEEEccCcEEEEEecchhheeeeeehhhhccceEEc
Confidence            46677788888888888888776543221 12222222245668999999999999999998777766443322344567


Q ss_pred             CCCCEEEEEECCCeEEEEeCCCCeeeEeeccccccEEEEEECC
Q psy12697        414 PQGLLLASCSDDMTLKIWSLDKDNCVHDLQAHNKEIYTIKWSP  456 (602)
Q Consensus       414 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~  456 (602)
                      +++.++..|+.|++.+..|.++..++...+....-..+-+..|
T Consensus       103 ~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~  145 (354)
T KOG4649|consen  103 FDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAP  145 (354)
T ss_pred             CCCceEEEecCCCcEEEecccccceEEecccCCceeccceecC
Confidence            8999999999999999999999998888765444333333333

>KOG2114|consensus

Probab=98.48  E-value=4e-05  Score=76.44  Aligned_cols=215  Identities=13%  Similarity=0.153  Sum_probs=138.0

Q ss_pred             eeCCCCCeEEEEeCCCeEEEEcCCCcceeecccccCC-eEEEEEccCCCEEEEEecCC-----cEEEEeCCCCceeEEee
Q psy12697        287 DWNNNGSFLATGSYDGYARIWTSDGSLKSTLGQHKGP-IFALKWNKRGNYILSAGVDK-----TTIIWDAASGQCEQQFS  360 (602)
Q Consensus       287 ~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~-i~~~~~~~~~~~l~~~~~dg-----~i~~wd~~~~~~~~~~~  360 (602)
                      +|++.+..++.|+.+|.|.+++..-.....+..+... |..+....+.++|++.+.|+     .+++|+++.-+.-    
T Consensus        30 c~~s~~~~vvigt~~G~V~~Ln~s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n----  105 (933)
T KOG2114|consen   30 CCSSSTGSVVIGTADGRVVILNSSFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKN----  105 (933)
T ss_pred             EEcCCCceEEEeeccccEEEecccceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCC----
Confidence            4678888999999999999999877776777777777 55554444447888877665     4788887643210    


Q ss_pred             eccCCeeeeeccCCCeEEEeeCCCeEEEEEcCCCceeeEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeeeE
Q psy12697        361 FHSAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVH  440 (602)
Q Consensus       361 ~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~  440 (602)
                         .+..++              +..+++-..       ......++++++++.+-+.+|+|-.+|.|..+.-+   ..+
T Consensus       106 ---~sP~c~--------------~~~ri~~~~-------np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GD---i~R  158 (933)
T KOG2114|consen  106 ---NSPQCL--------------YEHRIFTIK-------NPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGD---ILR  158 (933)
T ss_pred             ---CCccee--------------eeeeeeccC-------CCCCCCcceEEEEEccccEEEEEecCcEEEEEcCc---chh
Confidence               000000              011111111       11134578899999999999999999999888532   111


Q ss_pred             eeccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCce-eeeec
Q psy12697        441 DLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQC-EQQFS  519 (602)
Q Consensus       441 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~  519 (602)
                      ..-      ....++                     .....+|+.+++..+++.++-+..-..|.+|.+....+ ...+.
T Consensus       159 Drg------sr~~~~---------------------~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld  211 (933)
T KOG2114|consen  159 DRG------SRQDYS---------------------HRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSGRTPSLKVLD  211 (933)
T ss_pred             ccc------cceeee---------------------ccCCCCceeeEEecCCceeEEEEecceeEEEEecCCCcceeeec
Confidence            100      011111                     12457888888888887733333445699999884442 45577


Q ss_pred             ccCCCeeEeeecCCc-eEEEeeCCCcEEEeecCCCCceeeee
Q psy12697        520 FHSAPALDVDWQSNT-SFASCSTDQHIHVCKLHSDKPVKSFE  560 (602)
Q Consensus       520 ~~~~~v~~~~~s~~~-~l~~~~~d~~i~iw~~~~~~~~~~~~  560 (602)
                      .|..++.|..+++.. .+++++ +..+.+|+....++-..+.
T Consensus       212 ~~G~~lnCss~~~~t~qfIca~-~e~l~fY~sd~~~~cfaf~  252 (933)
T KOG2114|consen  212 NNGISLNCSSFSDGTYQFICAG-SEFLYFYDSDGRGPCFAFE  252 (933)
T ss_pred             cCCccceeeecCCCCccEEEec-CceEEEEcCCCcceeeeec
Confidence            788899999998877 466554 4569999987665555555

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=98.44  E-value=0.00027  Score=64.45  Aligned_cols=247  Identities=12%  Similarity=0.117  Sum_probs=135.6

Q ss_pred             EEEcCCCCEEEEee----------CCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEeeCCCCCeEEE
Q psy12697        228 CAWNPVKDFLASGS----------GDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFLAT  297 (602)
Q Consensus       228 ~~~~~~~~~l~s~~----------~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~  297 (602)
                      +..+|+++.+++++          ..-.|.+||..+-.......+        ..+.... .......++++.|++++++
T Consensus        41 ~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~i--------P~k~R~~-~~~~~~~~~ls~dgk~~~V  111 (342)
T PF06433_consen   41 VALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEI--------PPKPRAQ-VVPYKNMFALSADGKFLYV  111 (342)
T ss_dssp             EEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEE--------TTS-B---BS--GGGEEE-TTSSEEEE
T ss_pred             eeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEec--------CCcchhe-ecccccceEEccCCcEEEE
Confidence            56788888877643          234689999987643322111        1110000 0123345678888988877


Q ss_pred             EeC--CCeEEEEcCCCcceeecccccCCeEEEEEccCCCEEEEEecCCcEEEEeCC-CCceeEEeee----ccCCee-ee
Q psy12697        298 GSY--DGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAA-SGQCEQQFSF----HSAPAL-DV  369 (602)
Q Consensus       298 ~~~--dg~i~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~-~~~~~~~~~~----~~~~~~-~~  369 (602)
                      ...  ...|.+.|+..+.......-.+ ...+--+++ +.+.+.|.||++.-..+. .|+.......    ...++. .-
T Consensus       112 ~N~TPa~SVtVVDl~~~kvv~ei~~PG-C~~iyP~~~-~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~  189 (342)
T PF06433_consen  112 QNFTPATSVTVVDLAAKKVVGEIDTPG-CWLIYPSGN-RGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHP  189 (342)
T ss_dssp             EEESSSEEEEEEETTTTEEEEEEEGTS-EEEEEEEET-TEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--
T ss_pred             EccCCCCeEEEEECCCCceeeeecCCC-EEEEEecCC-CceEEEecCCceEEEEECCCCCEeEeeccccCCCCccccccc
Confidence            543  3578888887554433322222 222222222 457888899999888877 5555432211    111221 22


Q ss_pred             ecc-CCCeEEEeeCCCeEEEEEcCCCcee--eEeccC----------CCCeEEEEECCCCCEEEEEEC---CC-------
Q psy12697        370 DWQ-SNTSFASCSTDQHIHVCKLHSDKPV--KSFEGH----------TNEVNAIKWDPQGLLLASCSD---DM-------  426 (602)
Q Consensus       370 ~~~-~~~~~~~~~~~~~i~i~d~~~~~~~--~~~~~~----------~~~i~~~~~~~~~~~l~~~~~---dg-------  426 (602)
                      .+. .++.++..+.+|.|+-.|+......  ..+..-          .+.-.-+++++..+.|.+.-.   ++       
T Consensus       190 ~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgt  269 (342)
T PF06433_consen  190 AYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGT  269 (342)
T ss_dssp             EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EE
T ss_pred             ceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCce
Confidence            222 3456777899999999998776532  122110          122344777776555555322   11       


Q ss_pred             eEEEEeCCCCeeeEeeccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCC-EEEEE-eCCCeE
Q psy12697        427 TLKIWSLDKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGN-YILSA-GVDKTT  504 (602)
Q Consensus       427 ~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~-~l~s~-~~dg~i  504 (602)
                      .|-++|+.+++.+.++...                                   .++.+|..+.+.+ +|++. ..++.+
T Consensus       270 eVWv~D~~t~krv~Ri~l~-----------------------------------~~~~Si~Vsqd~~P~L~~~~~~~~~l  314 (342)
T PF06433_consen  270 EVWVYDLKTHKRVARIPLE-----------------------------------HPIDSIAVSQDDKPLLYALSAGDGTL  314 (342)
T ss_dssp             EEEEEETTTTEEEEEEEEE-----------------------------------EEESEEEEESSSS-EEEEEETTTTEE
T ss_pred             EEEEEECCCCeEEEEEeCC-----------------------------------CccceEEEccCCCcEEEEEcCCCCeE
Confidence            3777788888888777532                                   2233455555444 56554 457999


Q ss_pred             EEEeCCCCceeeeecc
Q psy12697        505 IIWDAASGQCEQQFSF  520 (602)
Q Consensus       505 ~iwd~~~~~~~~~~~~  520 (602)
                      .+||..+|+.+.++..
T Consensus       315 ~v~D~~tGk~~~~~~~  330 (342)
T PF06433_consen  315 DVYDAATGKLVRSIEQ  330 (342)
T ss_dssp             EEEETTT--EEEEE--
T ss_pred             EEEeCcCCcEEeehhc
Confidence            9999999999988874

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=98.43  E-value=0.00021  Score=71.97  Aligned_cols=239  Identities=10%  Similarity=0.070  Sum_probs=137.9

Q ss_pred             CCeEEEEeCCCeEEEEcCC-CcceeecccccC------CeE--EEEEccCCCEEEEEecCCcEEEEeCCCCceeEEeeec
Q psy12697        292 GSFLATGSYDGYARIWTSD-GSLKSTLGQHKG------PIF--ALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFH  362 (602)
Q Consensus       292 ~~~l~~~~~dg~i~i~~~~-~~~~~~~~~~~~------~i~--~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~  362 (602)
                      +..+++++.++.+.-+|.. |+.+-.......      .+.  .+... ++..++.++.++.|..+|.++|+.+..+...
T Consensus        61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~~  139 (488)
T cd00216          61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAETGKQVWKFGNN  139 (488)
T ss_pred             CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCCeEEEecCCCeEEEEECCCCCEeeeecCC
Confidence            3456667777888888865 444433322111      000  11111 2267888889999999999999998887654


Q ss_pred             cCC-----ee-eeeccCCCeEEEee---------CCCeEEEEEcCCCceeeEeccCCCC--------------------e
Q psy12697        363 SAP-----AL-DVDWQSNTSFASCS---------TDQHIHVCKLHSDKPVKSFEGHTNE--------------------V  407 (602)
Q Consensus       363 ~~~-----~~-~~~~~~~~~~~~~~---------~~~~i~i~d~~~~~~~~~~~~~~~~--------------------i  407 (602)
                      ...     +. ..... ++.+++++         .++.++.+|..+++.+-.+......                    +
T Consensus       140 ~~~~~~~~i~ssP~v~-~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~v  218 (488)
T cd00216         140 DQVPPGYTMTGAPTIV-KKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTS  218 (488)
T ss_pred             CCcCcceEecCCCEEE-CCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCCc
Confidence            331     11 11111 35555554         3678999999999887766532110                    1


Q ss_pred             -EEEEECCCCCEEEEEECCC------------------eEEEEeCCCCeeeEeeccccccEEEEEECCCCCCCCCCCcce
Q psy12697        408 -NAIKWDPQGLLLASCSDDM------------------TLKIWSLDKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSL  468 (602)
Q Consensus       408 -~~~~~~~~~~~l~~~~~dg------------------~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~  468 (602)
                       ...++++.+..++.++.++                  .|.-+|..+++.+..++........+.               
T Consensus       219 w~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~---------------  283 (488)
T cd00216         219 WASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYD---------------  283 (488)
T ss_pred             cCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccc---------------
Confidence             1345555667788887665                  688888888888877643211111000               


Q ss_pred             eeeeeeccCCccCCe-EEEEEccCCC---EEEEEeCCCeEEEEeCCCCceeeeecccCCCeeEeeecCCceEEE------
Q psy12697        469 IFILKSTLGQHKGPI-FALKWNKRGN---YILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTSFAS------  538 (602)
Q Consensus       469 ~~~~~~~~~~~~~~v-~~i~~s~~~~---~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~l~~------  538 (602)
                               ....++ ..+. .-+|.   .++.++.+|.+...|.++|+.+......   ...++.+|+..++.      
T Consensus       284 ---------~~s~p~~~~~~-~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~---~~~~~~~~~~vyv~~~~~~~  350 (488)
T cd00216         284 ---------GPNQPSLADIK-PKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEV---EQPMAYDPGLVYLGAFHIPL  350 (488)
T ss_pred             ---------cCCCCeEEecc-ccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEee---ccccccCCceEEEccccccc
Confidence                     000000 0000 01232   5778888999999999999988765422   11234444222221      


Q ss_pred             -----------eeCCCcEEEeecCCCCceeeee
Q psy12697        539 -----------CSTDQHIHVCKLHSDKPVKSFE  560 (602)
Q Consensus       539 -----------~~~d~~i~iw~~~~~~~~~~~~  560 (602)
                                 ...+|.+.-.|+.+++.+.+.+
T Consensus       351 ~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~  383 (488)
T cd00216         351 GLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKR  383 (488)
T ss_pred             cCcccccCCCCCCCceEEEEEeCCCCcEeeEee
Confidence                       1246778888888887776654

The alignment model contains an 8-bladed beta-propeller.

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.42  E-value=0.00023  Score=68.60  Aligned_cols=67  Identities=22%  Similarity=0.373  Sum_probs=50.1

Q ss_pred             CCCCCeEEEEe---------CCCeEEEEcCCCcceeecccccCCeEEEEEccCCCEEEEEecCCcEEEEeCCCCcee
Q psy12697        289 NNNGSFLATGS---------YDGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCE  356 (602)
Q Consensus       289 ~~~~~~l~~~~---------~dg~i~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~  356 (602)
                      |||+++++...         ..+.+.++|++......+......+....|+|+|+.++... ++.|.+++..++...
T Consensus         1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~   76 (353)
T PF00930_consen    1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPPPPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQET   76 (353)
T ss_dssp             -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-EETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEE
T ss_pred             CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCCccccccceeecCCCeeEEEe-cCceEEEECCCCCeE
Confidence            57777776642         24678999998877777766678899999999999998875 678999998877444

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.41  E-value=0.00035  Score=68.10  Aligned_cols=217  Identities=16%  Similarity=0.220  Sum_probs=115.2

Q ss_pred             cccCCeEEEEEccCCCEEEEEecCCcEEEEeCCCCceeEEeeeccCCeeeeeccCCCeEEEeeCCCeEEEEEcCCCceee
Q psy12697        319 QHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVK  398 (602)
Q Consensus       319 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~  398 (602)
                      ........+.++|+|+++++ +.||...++.....+...     .+....+.|.+++.+++-..++.|.++.--..+...
T Consensus        30 ~~~~~p~~ls~npngr~v~V-~g~geY~iyt~~~~r~k~-----~G~g~~~vw~~~n~yAv~~~~~~I~I~kn~~~~~~k  103 (443)
T PF04053_consen   30 SCEIYPQSLSHNPNGRFVLV-CGDGEYEIYTALAWRNKA-----FGSGLSFVWSSRNRYAVLESSSTIKIYKNFKNEVVK  103 (443)
T ss_dssp             E-SS--SEEEE-TTSSEEEE-EETTEEEEEETTTTEEEE-----EEE-SEEEE-TSSEEEEE-TTS-EEEEETTEE-TT-
T ss_pred             CCCcCCeeEEECCCCCEEEE-EcCCEEEEEEccCCcccc-----cCceeEEEEecCccEEEEECCCeEEEEEcCccccce
Confidence            34445789999999998888 457888888744333222     234567889999999999999999997433333323


Q ss_pred             EeccCCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeeeEeeccccccEEEEEECCCCCCCCCCCcceeeeeeeccCC
Q psy12697        399 SFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQ  478 (602)
Q Consensus       399 ~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  478 (602)
                      .+... ..+..+-.   |.+|+..+.+ .|.+||+.+++.+.++...                                 
T Consensus       104 ~i~~~-~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~---------------------------------  145 (443)
T PF04053_consen  104 SIKLP-FSVEKIFG---GNLLGVKSSD-FICFYDWETGKLIRRIDVS---------------------------------  145 (443)
T ss_dssp             ----S-S-EEEEE----SSSEEEEETT-EEEEE-TTT--EEEEESS----------------------------------
T ss_pred             EEcCC-cccceEEc---CcEEEEECCC-CEEEEEhhHcceeeEEecC---------------------------------
Confidence            33322 12344432   8888887765 7999999999988887532                                 


Q ss_pred             ccCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCC-----------ceeeeecccCCCeeEeeecCCceEEEeeCCCcEEE
Q psy12697        479 HKGPIFALKWNKRGNYILSAGVDKTTIIWDAASG-----------QCEQQFSFHSAPALDVDWQSNTSFASCSTDQHIHV  547 (602)
Q Consensus       479 ~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~~~~-----------~~~~~~~~~~~~v~~~~~s~~~~l~~~~~d~~i~i  547 (602)
                         +|..+.|+++|++++..+.+ .+.|++....           .....+..-...|.+.+|..| .++..+.. .++-
T Consensus       146 ---~vk~V~Ws~~g~~val~t~~-~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d-~fiYtT~~-~lkY  219 (443)
T PF04053_consen  146 ---AVKYVIWSDDGELVALVTKD-SIYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED-CFIYTTSN-HLKY  219 (443)
T ss_dssp             ---E-EEEEE-TTSSEEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT-EEEEE-TT-EEEE
T ss_pred             ---CCcEEEEECCCCEEEEEeCC-eEEEEEecchhcccccccCchhceEEEEEecceeEEEEEEcC-EEEEEcCC-eEEE
Confidence               25566777788888888765 4777765432           022222222456777888766 33333333 5554


Q ss_pred             eecCCCCceeeeecccccceEEEEecCCcEEEEEECCCCCeEEEeccCCeEE
Q psy12697        548 CKLHSDKPVKSFEGHTTGQLVHSYKGTGGIFEVCWNSRGDKVGASASDGSVF  599 (602)
Q Consensus       548 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~v~  599 (602)
                      +-  .|         .. ..+..+  ..++.=+...|+.+.|.....|+.+.
T Consensus       220 l~--~G---------e~-~~i~~l--d~~~yllgy~~~~~~ly~~Dr~~~v~  257 (443)
T PF04053_consen  220 LV--NG---------ET-GIIAHL--DKPLYLLGYLPKENRLYLIDRDGNVI  257 (443)
T ss_dssp             EE--TT---------EE-EEEEE---SS--EEEEEETTTTEEEEE-TT--EE
T ss_pred             EE--cC---------Cc-ceEEEc--CCceEEEEEEccCCEEEEEECCCCEE
Confidence            21  11         11 111111  24566667777777888888887664

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=98.35  E-value=0.0004  Score=61.72  Aligned_cols=209  Identities=12%  Similarity=0.112  Sum_probs=117.3

Q ss_pred             eeeccCCceEEEEECCCCC-eEEEeeCCceEEEEecCCceeEEEeeccCceEEEEeCCCCCCCCCCCCccccccccccCC
Q psy12697        135 TLTRHTEPVYSVAFSPDGK-FLASGSFDKCVHIWSARTGQLVHSYKGTGGIFEVCWNSRGTPPNPPESMEVDASIEIPQS  213 (602)
Q Consensus       135 ~l~~h~~~V~~~~~s~d~~-~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  213 (602)
                      .+.+-...+..++|.|+.+ +.++....+.|...+. +|+.++.++.                                 
T Consensus        16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l---------------------------------   61 (248)
T PF06977_consen   16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPL---------------------------------   61 (248)
T ss_dssp             E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE----------------------------------
T ss_pred             ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeC---------------------------------
Confidence            4556666799999999765 5556667888888886 5777766542                                 


Q ss_pred             cceEeeCCCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEeeCCCCC
Q psy12697        214 KATKLIGHESEVFICAWNPVKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGS  293 (602)
Q Consensus       214 ~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  293 (602)
                           .+ .+..-.+++..++.++++.-.++.+.+.++.........  .......   .+.....+..+-.++|+|.++
T Consensus        62 -----~g-~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~~~~~~--~~~~~~~---l~~~~~~N~G~EGla~D~~~~  130 (248)
T PF06977_consen   62 -----DG-FGDYEGITYLGNGRYVLSEERDQRLYIFTIDDDTTSLDR--ADVQKIS---LGFPNKGNKGFEGLAYDPKTN  130 (248)
T ss_dssp             -----SS--SSEEEEEE-STTEEEEEETTTTEEEEEEE----TT--E--EEEEEEE------S---SS--EEEEEETTTT
T ss_pred             -----CC-CCCceeEEEECCCEEEEEEcCCCcEEEEEEeccccccch--hhceEEe---cccccCCCcceEEEEEcCCCC
Confidence                 12 345677888877877777777999999998654432111  1111111   011123456799999999888


Q ss_pred             eEEEEeCCCeEEEEcCCC----ccee--e------cccccCCeEEEEEccCCCE-EEEEecCCcEEEEeCCCCceeEEee
Q psy12697        294 FLATGSYDGYARIWTSDG----SLKS--T------LGQHKGPIFALKWNKRGNY-ILSAGVDKTTIIWDAASGQCEQQFS  360 (602)
Q Consensus       294 ~l~~~~~dg~i~i~~~~~----~~~~--~------~~~~~~~i~~~~~~~~~~~-l~~~~~dg~i~~wd~~~~~~~~~~~  360 (602)
                      .|+++-...-..+|..++    ....  .      .......+.+++++|.... ++....+..+..+| .+|+.+..+.
T Consensus       131 ~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~  209 (248)
T PF06977_consen  131 RLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLS  209 (248)
T ss_dssp             EEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE
T ss_pred             EEEEEeCCCChhhEEEccccCccceeeccccccccccceeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEE
Confidence            888887776666666543    1110  0      1123345788999986554 55566677888888 6788777666


Q ss_pred             ecc---------CCeeeeeccCCCeEEEeeCCCeEEEE
Q psy12697        361 FHS---------APALDVDWQSNTSFASCSTDQHIHVC  389 (602)
Q Consensus       361 ~~~---------~~~~~~~~~~~~~~~~~~~~~~i~i~  389 (602)
                      ...         ...-.+++.+++.+.+.++-+..+++
T Consensus       210 L~~g~~gl~~~~~QpEGIa~d~~G~LYIvsEpNlfy~f  247 (248)
T PF06977_consen  210 LDRGFHGLSKDIPQPEGIAFDPDGNLYIVSEPNLFYRF  247 (248)
T ss_dssp             -STTGGG-SS---SEEEEEE-TT--EEEEETTTEEEEE
T ss_pred             eCCcccCcccccCCccEEEECCCCCEEEEcCCceEEEe
Confidence            544         24667888888888888887766654

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=98.33  E-value=7.5e-05  Score=71.67  Aligned_cols=220  Identities=14%  Similarity=0.142  Sum_probs=123.0

Q ss_pred             ceEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCC-Cccce----------------EEEE----------EEecCCCcc
Q psy12697        224 EVFICAWNPVKDFLASGSGDSTARIWDMTDSTKKD-PKELQ----------------IVLR----------HCISKGGTE  276 (602)
Q Consensus       224 ~v~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~-~~~~~----------------~~~~----------~~~~~~~~~  276 (602)
                      .|..+.|.++..-|+++...|.|.+|.+...+... .....                .+..          ..+.+....
T Consensus         3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~   82 (395)
T PF08596_consen    3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL   82 (395)
T ss_dssp             -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred             eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence            48899999999999999999999999876543322 00000                0000          000001111


Q ss_pred             cCCCCceeEEeeCCCCCeEEEEeCCCeEEEEcCCCcceeec---cc------ccCCeEEEEEcc-----CC---CEEEEE
Q psy12697        277 VPSNKDVTSLDWNNNGSFLATGSYDGYARIWTSDGSLKSTL---GQ------HKGPIFALKWNK-----RG---NYILSA  339 (602)
Q Consensus       277 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~---~~------~~~~i~~~~~~~-----~~---~~l~~~  339 (602)
                      ....++|++++.|.-| ++++|..+|.+.+.|++|..+...   ..      ....++++.|+.     |+   -.+++|
T Consensus        83 ~~~~g~vtal~~S~iG-Fvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vG  161 (395)
T PF08596_consen   83 DAKQGPVTALKNSDIG-FVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVG  161 (395)
T ss_dssp             ---S-SEEEEEE-BTS-EEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEE
T ss_pred             eccCCcEeEEecCCCc-EEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEE
Confidence            1236889999998554 899999999999999987644221   12      234688888862     22   468899


Q ss_pred             ecCCcEEEEeCCC---CceeEEe----eeccCCeeeeecc-------------------C---CCeEEEeeCCCeEEEEE
Q psy12697        340 GVDKTTIIWDAAS---GQCEQQF----SFHSAPALDVDWQ-------------------S---NTSFASCSTDQHIHVCK  390 (602)
Q Consensus       340 ~~dg~i~~wd~~~---~~~~~~~----~~~~~~~~~~~~~-------------------~---~~~~~~~~~~~~i~i~d  390 (602)
                      +..|.+.+|.+.-   +.....+    ..+..++..+...                   +   -..+++...+..++++.
T Consensus       162 Tn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~~  241 (395)
T PF08596_consen  162 TNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRVFK  241 (395)
T ss_dssp             ETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE-
T ss_pred             eCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEEEe
Confidence            9999999997641   1111111    1233443333211                   1   12366677788999999


Q ss_pred             cCCCceeeEeccCCCCeEEEEE-----CCCCCEEEEEECCCeEEEEeCCCCeeeEeecc
Q psy12697        391 LHSDKPVKSFEGHTNEVNAIKW-----DPQGLLLASCSDDMTLKIWSLDKDNCVHDLQA  444 (602)
Q Consensus       391 ~~~~~~~~~~~~~~~~i~~~~~-----~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~  444 (602)
                      ..+.+...+..........+.+     ...+..|++-..+|.|++|.+...+.+..++.
T Consensus       242 ~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l  300 (395)
T PF08596_consen  242 PPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSL  300 (395)
T ss_dssp             TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-
T ss_pred             CCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccC
Confidence            9888776655522223334444     23567888999999999999998887776654

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.32  E-value=1.5e-05  Score=76.53  Aligned_cols=93  Identities=19%  Similarity=0.249  Sum_probs=71.2

Q ss_pred             ceeeeecccceeee--ee-eccCCceEEEEECCCCCeEEEeeCCceEEEEecCCceeEEEeeccCceEEEEeCCCCCCCC
Q psy12697        121 TLPLWDVERGECLN--TL-TRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKGTGGIFEVCWNSRGTPPN  197 (602)
Q Consensus       121 ~i~vwd~~~~~~~~--~l-~~h~~~V~~~~~s~d~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  197 (602)
                      .-++|+....+..+  .. -.....|.|++++|+.+.|+.|+.||+|.+||...+....                     
T Consensus       237 d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~---------------------  295 (545)
T PF11768_consen  237 DSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLL---------------------  295 (545)
T ss_pred             EEEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeeee---------------------
Confidence            34566665543221  11 2478899999999999999999999999999987664321                     


Q ss_pred             CCCCccccccccccCCcceEeeCCCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCCC
Q psy12697        198 PPESMEVDASIEIPQSKATKLIGHESEVFICAWNPVKDFLASGSGDSTARIWDMTDST  255 (602)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~  255 (602)
                                           ....-..+.++|+|+|..+++|+..|.+.+||+.-..
T Consensus       296 ---------------------~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALsp  332 (545)
T PF11768_consen  296 ---------------------AKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALSP  332 (545)
T ss_pred             ---------------------eeecccceEEEEcCCCcEEEEEcCCceEEEEEeecCc
Confidence                                 1233457789999999999999999999999987554

>PRK02888 nitrous-oxide reductase; Validated

Probab=98.31  E-value=0.0005  Score=68.13  Aligned_cols=158  Identities=12%  Similarity=0.139  Sum_probs=92.9

Q ss_pred             CeEEEEEccCCCEEEEEecC----CcEEEEeCCCCceeEEeeeccCCeeeeeccCCCeEEEeeCCCeEEEEEcCC----C
Q psy12697        323 PIFALKWNKRGNYILSAGVD----KTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTSFASCSTDQHIHVCKLHS----D  394 (602)
Q Consensus       323 ~i~~~~~~~~~~~l~~~~~d----g~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~----~  394 (602)
                      ....+.++|+|+++++.+.+    .++...+..+......+...  .+  ..+.+++.+... .++.|.+.|..+    +
T Consensus       236 npd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~--~i--ea~vkdGK~~~V-~gn~V~VID~~t~~~~~  310 (635)
T PRK02888        236 NLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIA--RI--EEAVKAGKFKTI-GGSKVPVVDGRKAANAG  310 (635)
T ss_pred             CcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchH--HH--HHhhhCCCEEEE-CCCEEEEEECCccccCC
Confidence            44667889999998877632    23333333222211111111  00  022334443333 367899999988    3


Q ss_pred             -ceeeEeccCCCCeEEEEECCCCCEEEEEEC-CCeEEEEeCCCCeeeEe--eccccccEEEEEECCCCCCCCCCCcceee
Q psy12697        395 -KPVKSFEGHTNEVNAIKWDPQGLLLASCSD-DMTLKIWSLDKDNCVHD--LQAHNKEIYTIKWSPTGPETSNPNMSLIF  470 (602)
Q Consensus       395 -~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~--~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  470 (602)
                       +.+..+. -......+.++|||+++++++. +.+|.|.|+.+.+....  +.....-+-.+.                 
T Consensus       311 ~~v~~yIP-VGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaeve-----------------  372 (635)
T PRK02888        311 SALTRYVP-VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPE-----------------  372 (635)
T ss_pred             cceEEEEE-CCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeec-----------------
Confidence             3344333 4456788999999999887765 78999999987543211  000000000000                 


Q ss_pred             eeeeccCCccCCeEEEEEccCCCEEEEEeCCCeEEEEeCCC
Q psy12697        471 ILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAAS  511 (602)
Q Consensus       471 ~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~~~  511 (602)
                              -...-...+|+++|+...|-..|..|..||+.+
T Consensus       373 --------vGlGPLHTaFDg~G~aytslf~dsqv~kwn~~~  405 (635)
T PRK02888        373 --------LGLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA  405 (635)
T ss_pred             --------cCCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence                    012234677888998888889999999999876

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=98.28  E-value=8.6e-05  Score=71.28  Aligned_cols=290  Identities=11%  Similarity=0.090  Sum_probs=138.2

Q ss_pred             ceeEEeeCCCCCeEEEEeCCCeEEEEcCCCcceeecccccCCeEEEEEccCCCEEEEEecCCcEEEEeCCC--------C
Q psy12697        282 DVTSLDWNNNGSFLATGSYDGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAAS--------G  353 (602)
Q Consensus       282 ~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~--------~  353 (602)
                      .|+.+.|.++..-|++|...|.|.+|......... .....+-....+.+-      ...++.-.+-|+..        +
T Consensus         3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~-~~~~~~~~~~~~~~~------~~~~~~~~l~di~~r~~~~~~~g   75 (395)
T PF08596_consen    3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYG-NREQPPDLDYNFRRF------SLNNSPGKLTDISDRAPPSLKEG   75 (395)
T ss_dssp             -EEEEEEETTTTEEEEEETTS-EEEEEEEE-------------------S--------GGGSS-SEEE-GGG--TT-SEE
T ss_pred             eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCC-ccCCCcccCcccccc------cccCCCcceEEehhhCCcccccc
Confidence            48899999999999999999999998744211111 000001111111110      00111122222221        1


Q ss_pred             -ceeEEeeeccCCeeeeeccCCCeEEEeeCCCeEEEEEcCCCceeeEec--c------CCCCeEEEEECC-----CC---
Q psy12697        354 -QCEQQFSFHSAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFE--G------HTNEVNAIKWDP-----QG---  416 (602)
Q Consensus       354 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~--~------~~~~i~~~~~~~-----~~---  416 (602)
                       .....+....+++.+++.++-+.+++|..+|.+.|.|++....+..-.  .      ....++++.|..     |+   
T Consensus        76 f~P~~l~~~~~g~vtal~~S~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySS  155 (395)
T PF08596_consen   76 FLPLTLLDAKQGPVTALKNSDIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSS  155 (395)
T ss_dssp             EEEEEEE---S-SEEEEEE-BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEE
T ss_pred             cCchhheeccCCcEeEEecCCCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccc
Confidence             122334456788999999988999999999999999998877665421  1      233588888863     33   


Q ss_pred             CEEEEEECCCeEEEEeCCC---Ceee----EeeccccccEEEEE-ECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEE
Q psy12697        417 LLLASCSDDMTLKIWSLDK---DNCV----HDLQAHNKEIYTIK-WSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKW  488 (602)
Q Consensus       417 ~~l~~~~~dg~i~iwd~~~---~~~~----~~~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~  488 (602)
                      -.|++|...|.+.+|.+.-   +...    .....+.+++..+. +..+....+........    .+. ....+     
T Consensus       156 i~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~----~l~-~g~~i-----  225 (395)
T PF08596_consen  156 ICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQ----GLS-KGISI-----  225 (395)
T ss_dssp             EEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHH----GGG-GT--------
T ss_pred             eEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhh----ccc-cCCCc-----
Confidence            4788999999999998741   1111    11112334444433 21111111000000000    000 00000     


Q ss_pred             ccCCCEEEEEeCCCeEEEEeCCCCceeeeecccCCCeeEeeec-----CCc-eEEEeeCCCcEEEeecCCCCceeeeecc
Q psy12697        489 NKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQ-----SNT-SFASCSTDQHIHVCKLHSDKPVKSFEGH  562 (602)
Q Consensus       489 s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s-----~~~-~l~~~~~d~~i~iw~~~~~~~~~~~~~~  562 (602)
                        . .+++++ .+..++++...+.+.........-....+++-     ..+ .|++-..+|.|+++.+-.-+.+....-.
T Consensus       226 --~-g~vVvv-Se~~irv~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~  301 (395)
T PF08596_consen  226 --P-GYVVVV-SESDIRVFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLP  301 (395)
T ss_dssp             ----EEEEEE--SSEEEEE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-S
T ss_pred             --C-cEEEEE-cccceEEEeCCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCC
Confidence              1 134444 46679999998887765554222233344452     245 7888899999999999888777666543


Q ss_pred             cccceEEEEecCCcEEEEEECCCCCeEEEeccCCeEE
Q psy12697        563 TTGQLVHSYKGTGGIFEVCWNSRGDKVGASASDGSVF  599 (602)
Q Consensus       563 ~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~v~  599 (602)
                      ..-       ....+...+++++|..++-.+.....+
T Consensus       302 ~~~-------d~~~~~~ssis~~Gdi~~~~gpsE~~l  331 (395)
T PF08596_consen  302 PPL-------DSRRLSSSSISRNGDIFYWTGPSEIQL  331 (395)
T ss_dssp             S----------HHHHTT-EE-TTS-EEEE-SSSEEEE
T ss_pred             Ccc-------ccccccccEECCCCCEEEEeCcccEEE
Confidence            210       011234556788888776665544333

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=98.27  E-value=0.0066  Score=61.47  Aligned_cols=199  Identities=10%  Similarity=0.030  Sum_probs=106.7

Q ss_pred             CCEEEEeeCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEeeCCCCCeEEEEeCCCeEEEEcCC-Cc
Q psy12697        234 KDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFLATGSYDGYARIWTSD-GS  312 (602)
Q Consensus       234 ~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~-~~  312 (602)
                      +..++.++.++.|.-.|..+++.............  ..   .......-..+++  .+..+++++.++.+.-+|.. |+
T Consensus        69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~--~~---~~~~~~~~rg~av--~~~~v~v~t~dg~l~ALDa~TGk  141 (527)
T TIGR03075        69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDV--IP---VMCCDVVNRGVAL--YDGKVFFGTLDARLVALDAKTGK  141 (527)
T ss_pred             CCEEEEECCCCcEEEEECCCCceeeEecCCCCccc--cc---ccccccccccceE--ECCEEEEEcCCCEEEEEECCCCC
Confidence            45666677777888888888776543322110000  00   0000000001112  23467778888988888875 55


Q ss_pred             ceeeccc--ccC--CeEEEEEccCCCEEEEEe------cCCcEEEEeCCCCceeEEeeeccCC-----------------
Q psy12697        313 LKSTLGQ--HKG--PIFALKWNKRGNYILSAG------VDKTTIIWDAASGQCEQQFSFHSAP-----------------  365 (602)
Q Consensus       313 ~~~~~~~--~~~--~i~~~~~~~~~~~l~~~~------~dg~i~~wd~~~~~~~~~~~~~~~~-----------------  365 (602)
                      .+-....  +..  .+.+--.--++ .++.+.      .+|.|..+|.++|+.+..+......                 
T Consensus       142 ~~W~~~~~~~~~~~~~tssP~v~~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~  220 (527)
T TIGR03075       142 VVWSKKNGDYKAGYTITAAPLVVKG-KVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGA  220 (527)
T ss_pred             EEeecccccccccccccCCcEEECC-EEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCccccccccccccccccc
Confidence            5444331  110  11110001133 455543      2689999999999988765432211                 


Q ss_pred             --------------ee-eeeccCC-CeEEEeeCC-----C-----------eEEEEEcCCCceeeEeccCCCC-------
Q psy12697        366 --------------AL-DVDWQSN-TSFASCSTD-----Q-----------HIHVCKLHSDKPVKSFEGHTNE-------  406 (602)
Q Consensus       366 --------------~~-~~~~~~~-~~~~~~~~~-----~-----------~i~i~d~~~~~~~~~~~~~~~~-------  406 (602)
                                    +. .+.+.+. +.+..+..+     +           .|.-.|+++++..-.++.....       
T Consensus       221 ~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~  300 (527)
T TIGR03075       221 KTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGV  300 (527)
T ss_pred             CCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCC
Confidence                          00 1122222 334444311     2           6777888999887666542221       


Q ss_pred             --eEEEEECCCCC---EEEEEECCCeEEEEeCCCCeeeE
Q psy12697        407 --VNAIKWDPQGL---LLASCSDDMTLKIWSLDKDNCVH  440 (602)
Q Consensus       407 --i~~~~~~~~~~---~l~~~~~dg~i~iwd~~~~~~~~  440 (602)
                        ..-+.+..+|+   .++.+..+|.+.+.|.++++.+.
T Consensus       301 ~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i~  339 (527)
T TIGR03075       301 NEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLLS  339 (527)
T ss_pred             CCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCceec
Confidence              12233334666   78899999999999999998864

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=98.24  E-value=0.0013  Score=58.59  Aligned_cols=208  Identities=9%  Similarity=0.159  Sum_probs=115.8

Q ss_pred             ecccccCCeEEEEEccCCCEEE-EEecCCcEEEEeCCCCceeEEeeecc-CCeeeeeccCCCeEEEeeC-CCeEEEEEcC
Q psy12697        316 TLGQHKGPIFALKWNKRGNYIL-SAGVDKTTIIWDAASGQCEQQFSFHS-APALDVDWQSNTSFASCST-DQHIHVCKLH  392 (602)
Q Consensus       316 ~~~~~~~~i~~~~~~~~~~~l~-~~~~dg~i~~wd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~i~i~d~~  392 (602)
                      .+.+-...+..++|.|+.+.|+ +....+.|.-++. +|+.++.+.... ...-.+++..++.++...+ ++.+.++++.
T Consensus        16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~   94 (248)
T PF06977_consen   16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTID   94 (248)
T ss_dssp             E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE-
T ss_pred             ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEe
Confidence            4445556799999999866554 5556777877786 588888887654 5678888988898888775 7889998884


Q ss_pred             CCc------eeeEec-----cCCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeeeEeeccccccEEEEEECCCCCCC
Q psy12697        393 SDK------PVKSFE-----GHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHDLQAHNKEIYTIKWSPTGPET  461 (602)
Q Consensus       393 ~~~------~~~~~~-----~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  461 (602)
                      ...      ....+.     .++..+-.++|+|.++.|+.+-+..-..+|.++...       ....+......+     
T Consensus        95 ~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~-------~~~~~~~~~~~~-----  162 (248)
T PF06977_consen   95 DDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFP-------GGFDLFVSDDQD-----  162 (248)
T ss_dssp             ---TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT--------SS--EEEE-HH-----
T ss_pred             ccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEcccc-------Cccceeeccccc-----
Confidence            321      111121     244568999999988888887766556666654311       000000000000     


Q ss_pred             CCCCcceeeeeeeccCCccCCeEEEEEccC-CCEEEEEeCCCeEEEEeCCCCceeeeecccC---------CCeeEeeec
Q psy12697        462 SNPNMSLIFILKSTLGQHKGPIFALKWNKR-GNYILSAGVDKTTIIWDAASGQCEQQFSFHS---------APALDVDWQ  531 (602)
Q Consensus       462 ~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~---------~~v~~~~~s  531 (602)
                                 ..........+.+++++|. |++++....+..|..+| .+|+.+..+.-..         ...-.++|.
T Consensus       163 -----------~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d  230 (248)
T PF06977_consen  163 -----------LDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFD  230 (248)
T ss_dssp             -----------HH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-
T ss_pred             -----------cccccceeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEEC
Confidence                       0001123344677888874 56777777888999999 5677765544322         246789999


Q ss_pred             CCceEEEeeCCCcEEEe
Q psy12697        532 SNTSFASCSTDQHIHVC  548 (602)
Q Consensus       532 ~~~~l~~~~~d~~i~iw  548 (602)
                      ++|.|...+.-+.++++
T Consensus       231 ~~G~LYIvsEpNlfy~f  247 (248)
T PF06977_consen  231 PDGNLYIVSEPNLFYRF  247 (248)
T ss_dssp             TT--EEEEETTTEEEEE
T ss_pred             CCCCEEEEcCCceEEEe
Confidence            99966666677666654

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.24  E-value=0.0012  Score=63.74  Aligned_cols=305  Identities=16%  Similarity=0.228  Sum_probs=150.4

Q ss_pred             CCCCCeEEEee---------CCceEEEEecCCceeEEEeeccCceEEEEeCCCCCCCCCCCCccccccccccCCcceEee
Q psy12697        149 SPDGKFLASGS---------FDKCVHIWSARTGQLVHSYKGTGGIFEVCWNSRGTPPNPPESMEVDASIEIPQSKATKLI  219 (602)
Q Consensus       149 s~d~~~l~s~~---------~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  219 (602)
                      |||+++++...         ..+.+.|||+++++.....                                         
T Consensus         1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~-----------------------------------------   39 (353)
T PF00930_consen    1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLT-----------------------------------------   39 (353)
T ss_dssp             -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-----------------------------------------
T ss_pred             CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECc-----------------------------------------
Confidence            68888877743         3467888898887654321                                         


Q ss_pred             CCCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCc----ccCCCCceeEEeeCCCCCeE
Q psy12697        220 GHESEVFICAWNPVKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGT----EVPSNKDVTSLDWNNNGSFL  295 (602)
Q Consensus       220 ~h~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~i~~~~~~~~~~~l  295 (602)
                      .....+....|+|+|+.++... ++.|.+++..++.......-.   ...+..+..    +-.--+.-..+-||||+++|
T Consensus        40 ~~~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg---~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~l  115 (353)
T PF00930_consen   40 PPPPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQLTTDG---EPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYL  115 (353)
T ss_dssp             -EETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEESES-----TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEE
T ss_pred             CCccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEecccc---ceeEEcCccceeccccccccccceEECCCCCEE
Confidence            1145677889999999988886 467888887665221100000   000000000    00001234678999999999


Q ss_pred             EEEeCC-CeEEEEcCCCcceeeccccc---CCeEEEEEccCCCEEEEEecCCcEEEEeCCCCceeE-Eee----eccCCe
Q psy12697        296 ATGSYD-GYARIWTSDGSLKSTLGQHK---GPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQ-QFS----FHSAPA  366 (602)
Q Consensus       296 ~~~~~d-g~i~i~~~~~~~~~~~~~~~---~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~-~~~----~~~~~~  366 (602)
                      +....| ..|..+.+.     ......   ..+..+.+-.-|.-...    -.+.++|+.+++... ...    ....-+
T Consensus       116 a~~~~d~~~v~~~~~~-----~~~~~~~~yp~~~~~~YPk~G~~np~----v~l~v~~~~~~~~~~~~~~~~~~~~~~yl  186 (353)
T PF00930_consen  116 AFLRFDEREVPEYPLP-----DYSPPDSQYPEVESIRYPKAGDPNPR----VSLFVVDLASGKTTELDPPNSLNPQDYYL  186 (353)
T ss_dssp             EEEEEE-TTS-EEEEE-----EESSSTESS-EEEEEE--BTTS---E----EEEEEEESSSTCCCEE---HHHHTSSEEE
T ss_pred             EEEEECCcCCceEEee-----ccCCccccCCcccccccCCCCCcCCc----eEEEEEECCCCcEEEeeeccccCCCccCc
Confidence            876544 233332211     000111   13444544333332211    146678888876542 111    234457


Q ss_pred             eeeeccCCCe-EEEeeCC-----CeEEEEEcCCCceeeEeccC-CCC---eEEEEEC-CCCC-EEEEEECCCe--EEEEe
Q psy12697        367 LDVDWQSNTS-FASCSTD-----QHIHVCKLHSDKPVKSFEGH-TNE---VNAIKWD-PQGL-LLASCSDDMT--LKIWS  432 (602)
Q Consensus       367 ~~~~~~~~~~-~~~~~~~-----~~i~i~d~~~~~~~~~~~~~-~~~---i~~~~~~-~~~~-~l~~~~~dg~--i~iwd  432 (602)
                      ..+.|.+++. +++.-.+     -.+.++|..+++........ ...   -....+. +++. +|.....||-  |.+++
T Consensus       187 ~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~  266 (353)
T PF00930_consen  187 TRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYD  266 (353)
T ss_dssp             EEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEE
T ss_pred             ccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEc
Confidence            7889988877 5544322     24677888776543333221 222   2244554 5554 4444556664  44555


Q ss_pred             CCCCeeeEeeccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEE-EEeC----CCeEEEE
Q psy12697        433 LDKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYIL-SAGV----DKTTIIW  507 (602)
Q Consensus       433 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~-s~~~----dg~i~iw  507 (602)
                      ...+. ...+....-.|..                                 -+.++++++.|. ++..    ...|+.-
T Consensus       267 ~~~~~-~~~lT~G~~~V~~---------------------------------i~~~d~~~~~iyf~a~~~~p~~r~lY~v  312 (353)
T PF00930_consen  267 LDGGK-PRQLTSGDWEVTS---------------------------------ILGWDEDNNRIYFTANGDNPGERHLYRV  312 (353)
T ss_dssp             TTSSE-EEESS-SSS-EEE---------------------------------EEEEECTSSEEEEEESSGGTTSBEEEEE
T ss_pred             ccccc-eeccccCceeecc---------------------------------cceEcCCCCEEEEEecCCCCCceEEEEE
Confidence            55444 2233332333322                                 244555555443 4443    2356666


Q ss_pred             eCCCCceeeeecccCCCeeEeeecCCc-e-EEEeeC
Q psy12697        508 DAASGQCEQQFSFHSAPALDVDWQSNT-S-FASCST  541 (602)
Q Consensus       508 d~~~~~~~~~~~~~~~~v~~~~~s~~~-~-l~~~~~  541 (602)
                      ++..+..+..+......-..+.|||++ + +.+++.
T Consensus       313 ~~~~~~~~~~LT~~~~~~~~~~~Spdg~y~v~~~s~  348 (353)
T PF00930_consen  313 SLDSGGEPKCLTCEDGDHYSASFSPDGKYYVDTYSG  348 (353)
T ss_dssp             ETTETTEEEESSTTSSTTEEEEE-TTSSEEEEEEES
T ss_pred             EeCCCCCeEeccCCCCCceEEEECCCCCEEEEEEcC
Confidence            666334445555333333689999999 4 444443

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.23  E-value=0.0032  Score=61.10  Aligned_cols=106  Identities=8%  Similarity=0.185  Sum_probs=75.1

Q ss_pred             CccCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeeecccCCCeeEeeecCCc-eEEEeeCCCcEEEeecCCCCce
Q psy12697        478 QHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNT-SFASCSTDQHIHVCKLHSDKPV  556 (602)
Q Consensus       478 ~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~-~l~~~~~d~~i~iw~~~~~~~~  556 (602)
                      ...+.|.+++++|+.+.|+.|+.||.|.+||...+...  +....-..+.++|+|+| .+++|+..|.+.+||+.-....
T Consensus       257 pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~--~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALspi~  334 (545)
T PF11768_consen  257 PLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTL--LAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALSPIK  334 (545)
T ss_pred             ecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeee--eeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecCccc
Confidence            46788999999999999999999999999998766433  22344567889999999 9999999999999998644322


Q ss_pred             -eeeecccccceE----EEEecCCcEEEEEECCC
Q psy12697        557 -KSFEGHTTGQLV----HSYKGTGGIFEVCWNSR  585 (602)
Q Consensus       557 -~~~~~~~~~~~~----~~~~~~~~i~~l~~spd  585 (602)
                       +.+.........    ..+.....+..+.|++.
T Consensus       335 ~qLlsEd~~P~~~L~Ls~yf~~~~~L~~iqW~~~  368 (545)
T PF11768_consen  335 MQLLSEDATPKSTLQLSKYFRVSSSLVHIQWAPA  368 (545)
T ss_pred             eeeccccCCCccEEeeehhccCcchhheeEeccC
Confidence             222111111111    12223456777888854

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.18  E-value=0.0012  Score=64.43  Aligned_cols=224  Identities=16%  Similarity=0.190  Sum_probs=115.4

Q ss_pred             eeeccCCceEEEEECCCCCeEEEeeCCceEEEEecCCceeEEEeeccCceEEEEeCCCCCCCCCCCCccccccccccCCc
Q psy12697        135 TLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKGTGGIFEVCWNSRGTPPNPPESMEVDASIEIPQSK  214 (602)
Q Consensus       135 ~l~~h~~~V~~~~~s~d~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  214 (602)
                      .+.........+.++|+|++++. +.||.-.|+.....+...                                      
T Consensus        27 ~lg~~~~~p~~ls~npngr~v~V-~g~geY~iyt~~~~r~k~--------------------------------------   67 (443)
T PF04053_consen   27 ELGSCEIYPQSLSHNPNGRFVLV-CGDGEYEIYTALAWRNKA--------------------------------------   67 (443)
T ss_dssp             EEEE-SS--SEEEE-TTSSEEEE-EETTEEEEEETTTTEEEE--------------------------------------
T ss_pred             cCCCCCcCCeeEEECCCCCEEEE-EcCCEEEEEEccCCcccc--------------------------------------
Confidence            33344556789999999999998 556777777643332221                                      


Q ss_pred             ceEeeCCCcceEEEEEcCCCCEEEEeeCCCcEEEE-eCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEeeCCCCC
Q psy12697        215 ATKLIGHESEVFICAWNPVKDFLASGSGDSTARIW-DMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGS  293 (602)
Q Consensus       215 ~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iw-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  293 (602)
                             .+.-....|.+. +.+|+-...+.|.++ +++... ......                 ...+..+-.   |.
T Consensus        68 -------~G~g~~~vw~~~-n~yAv~~~~~~I~I~kn~~~~~-~k~i~~-----------------~~~~~~If~---G~  118 (443)
T PF04053_consen   68 -------FGSGLSFVWSSR-NRYAVLESSSTIKIYKNFKNEV-VKSIKL-----------------PFSVEKIFG---GN  118 (443)
T ss_dssp             -------EEE-SEEEE-TS-SEEEEE-TTS-EEEEETTEE-T-T----------------------SS-EEEEE----SS
T ss_pred             -------cCceeEEEEecC-ccEEEEECCCeEEEEEcCcccc-ceEEcC-----------------CcccceEEc---Cc
Confidence                   223345678884 446666668889996 443222 111111                 111222222   77


Q ss_pred             eEEEEeCCCeEEEEcCC-CcceeecccccCCeEEEEEccCCCEEEEEecCCcEEEEeCCCC-----------ceeEEeee
Q psy12697        294 FLATGSYDGYARIWTSD-GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASG-----------QCEQQFSF  361 (602)
Q Consensus       294 ~l~~~~~dg~i~i~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~~-----------~~~~~~~~  361 (602)
                      +|...+.+ .|.+||.. ++.+..+...  +|..+.|++++++++..+.+ .+.+++....           .....+..
T Consensus       119 LL~~~~~~-~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t~~-~i~il~~~~~~~~~~~~~g~e~~f~~~~E  194 (443)
T PF04053_consen  119 LLGVKSSD-FICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVTKD-SIYILKYNLEAVAAIPEEGVEDAFELIHE  194 (443)
T ss_dssp             SEEEEETT-EEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEEEE
T ss_pred             EEEEECCC-CEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEeCC-eEEEEEecchhcccccccCchhceEEEEE
Confidence            77776554 89999987 5555555433  38999999999999988766 6777654322           02223332


Q ss_pred             ccCCeeeeeccCCCeEEEeeCCCeEEEEEcCCCceeeEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEeCCC
Q psy12697        362 HSAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDK  435 (602)
Q Consensus       362 ~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~  435 (602)
                      -...|.+..|..+ .|+-.+.. .++.  +-.|+ ...+..-..++.=+.+.|+.+.+.....|+.|..+.+..
T Consensus       195 ~~~~IkSg~W~~d-~fiYtT~~-~lkY--l~~Ge-~~~i~~ld~~~yllgy~~~~~~ly~~Dr~~~v~~~~ld~  263 (443)
T PF04053_consen  195 ISERIKSGCWVED-CFIYTTSN-HLKY--LVNGE-TGIIAHLDKPLYLLGYLPKENRLYLIDRDGNVISYELDL  263 (443)
T ss_dssp             E-S--SEEEEETT-EEEEE-TT-EEEE--EETTE-EEEEEE-SS--EEEEEETTTTEEEEE-TT--EEEEE--H
T ss_pred             ecceeEEEEEEcC-EEEEEcCC-eEEE--EEcCC-cceEEEcCCceEEEEEEccCCEEEEEECCCCEEEEEECH
Confidence            3567888888877 44444444 6655  32332 122222234566677777777888888888888887653

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=98.18  E-value=0.0024  Score=59.33  Aligned_cols=238  Identities=14%  Similarity=0.147  Sum_probs=134.4

Q ss_pred             CCCCeEEEEeCCCeEEEEcCCCcceeecccccCCeEEEEEccCCCEEEEEecCCcEEEEeCCCCceeEEe----------
Q psy12697        290 NNGSFLATGSYDGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQF----------  359 (602)
Q Consensus       290 ~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~----------  359 (602)
                      ..++.|+.|+.+| +.+++...........+...|..+...|+-+.|++-+ |+.+.++++.........          
T Consensus         5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~~   82 (275)
T PF00780_consen    5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRILKLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSRS   82 (275)
T ss_pred             cCCCEEEEEECCC-EEEEEecCCccceeEeecceEEEEEEecccCEEEEEc-CCccEEEEchhhcccccccccccccccc
Confidence            3577899999999 8888873222222222334499999999888777665 599999998765444311          


Q ss_pred             ---e-eccCCeeeee---ccCCCeEEEeeCCCeEEEEEcCCC-----ceeeEeccCCCCeEEEEECCCCCEEEEEECCCe
Q psy12697        360 ---S-FHSAPALDVD---WQSNTSFASCSTDQHIHVCKLHSD-----KPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMT  427 (602)
Q Consensus       360 ---~-~~~~~~~~~~---~~~~~~~~~~~~~~~i~i~d~~~~-----~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~  427 (602)
                         . .....+..++   ...+...++......|.+|.....     +..+.+. -...+..++|.  ++.++.|..++ 
T Consensus        83 ~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~-lp~~~~~i~~~--~~~i~v~~~~~-  158 (275)
T PF00780_consen   83 LPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEIS-LPDPPSSIAFL--GNKICVGTSKG-  158 (275)
T ss_pred             ccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEE-cCCCcEEEEEe--CCEEEEEeCCc-
Confidence               0 1112233333   223344556666668888887653     3445544 34678889998  55777777654 


Q ss_pred             EEEEeCCCCeeeEeeccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCCCeEEEE
Q psy12697        428 LKIWSLDKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIW  507 (602)
Q Consensus       428 i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iw  507 (602)
                      ..+.|+.++....-+......   ..+.                   .......++..+..+ ++.+|++-  |..-.+.
T Consensus       159 f~~idl~~~~~~~l~~~~~~~---~~~~-------------------~~~~~~~~~~~~~~~-~~e~Ll~~--~~~g~fv  213 (275)
T PF00780_consen  159 FYLIDLNTGSPSELLDPSDSS---SSFK-------------------SRNSSSKPLGIFQLS-DNEFLLCY--DNIGVFV  213 (275)
T ss_pred             eEEEecCCCCceEEeCccCCc---chhh-------------------hcccCCCceEEEEeC-CceEEEEe--cceEEEE
Confidence            788899876543333211111   0000                   000112233333333 34566543  3333334


Q ss_pred             eCCCCceee--eecccCCCeeEeeecCCceEEEeeCCCcEEEeecCCCCceeeeecc
Q psy12697        508 DAASGQCEQ--QFSFHSAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEGH  562 (602)
Q Consensus       508 d~~~~~~~~--~~~~~~~~v~~~~~s~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~  562 (602)
                      |. .|+..+  .+. -.....++++... +|+..+. +.|.||++.+++.++.+...
T Consensus       214 ~~-~G~~~r~~~i~-W~~~p~~~~~~~p-yli~~~~-~~iEV~~~~~~~lvQ~i~~~  266 (275)
T PF00780_consen  214 NK-NGEPSRKSTIQ-WSSAPQSVAYSSP-YLIAFSS-NSIEVRSLETGELVQTIPLP  266 (275)
T ss_pred             cC-CCCcCcccEEE-cCCchhEEEEECC-EEEEECC-CEEEEEECcCCcEEEEEECC
Confidence            43 344333  222 2334556666433 5555444 55999999999888877654

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=98.16  E-value=0.011  Score=59.93  Aligned_cols=54  Identities=13%  Similarity=0.201  Sum_probs=38.5

Q ss_pred             cEEEEeCCCCceeEEeeeccCCeeeee---------ccCCC----eEEEeeCCCeEEEEEcCCCcee
Q psy12697        344 TTIIWDAASGQCEQQFSFHSAPALDVD---------WQSNT----SFASCSTDQHIHVCKLHSDKPV  397 (602)
Q Consensus       344 ~i~~wd~~~~~~~~~~~~~~~~~~~~~---------~~~~~----~~~~~~~~~~i~i~d~~~~~~~  397 (602)
                      +|.-.|+++|+....++.....+.+..         ...++    .++.+..+|.+++.|..+++++
T Consensus       272 s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i  338 (527)
T TIGR03075       272 SIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLL  338 (527)
T ss_pred             eEEEEccccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCcee
Confidence            677889999999888776443332221         11222    4678899999999999999876

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=98.12  E-value=0.0011  Score=63.54  Aligned_cols=320  Identities=13%  Similarity=0.143  Sum_probs=158.0

Q ss_pred             EEEEcCCCCEEEEeeCCCcEEE---EeCCCCC-CCCCccceEEEEEEecCCCcccCCCCceeEEeeCC-----------C
Q psy12697        227 ICAWNPVKDFLASGSGDSTARI---WDMTDST-KKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNN-----------N  291 (602)
Q Consensus       227 ~~~~~~~~~~l~s~~~dg~i~i---w~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-----------~  291 (602)
                      .++.+|+++.|+.+..+..+.+   |+..... ........  ..     ..........|+++.|-|           |
T Consensus         6 ~isls~~~d~laiA~~~r~vil~~~w~~~~~~~~~~~~~~~--~~-----g~l~~~~~e~ITsi~clpl~s~~~s~~~~d   78 (415)
T PF14655_consen    6 SISLSPDGDLLAIARGQRLVILTSKWDSSRKGENENTYSIS--WS-----GPLDDEPGECITSILCLPLSSQKRSTGGPD   78 (415)
T ss_pred             eEEecCCCCEEEEEcCCEEEEEEeeccccccCCCCCeEEEE--ee-----eeccCCCCCEEEEEEEEEeecccccCCCCC
Confidence            4678899999999988776665   5442222 11111111  00     001111124667666543           4


Q ss_pred             CCeEEEEeCCCeEEEEcCCCcceeecccccCCeEEEEEccCC---------CEEEEEecCCcEEEEeCCCCceeEEeeec
Q psy12697        292 GSFLATGSYDGYARIWTSDGSLKSTLGQHKGPIFALKWNKRG---------NYILSAGVDKTTIIWDAASGQCEQQFSFH  362 (602)
Q Consensus       292 ~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~i~~~~~~~~~---------~~l~~~~~dg~i~~wd~~~~~~~~~~~~~  362 (602)
                      ...+++|..+|.|++|...|.++....-|..+|..+......         +.|..... +.+.+.|-.+-..  .+...
T Consensus        79 w~~I~VG~ssG~vrfyte~G~LL~~Q~~h~~pV~~ik~~~~~~~~~~~~~~eel~ily~-~~v~~Idg~sL~~--~L~~~  155 (415)
T PF14655_consen   79 WTCIAVGTSSGYVRFYTENGVLLLSQLLHEEPVLKIKCRSTKIPRHPGDSSEELSILYP-SAVVIIDGFSLFS--VLRAC  155 (415)
T ss_pred             cEEEEEEecccEEEEEeccchHHHHHhcCccceEEEEecccCCCCCCcccccEEEEEEC-CEEEEEecHHHHH--HHHHH
Confidence            678999999999999999999888888899999999875421         22333332 4555554221100  00000


Q ss_pred             cCCeeeeeccCCCeEEEeeCCCeEEEEEcCCCceeeEe-------------------ccCCCCeEEEEEC-CCCCEEEEE
Q psy12697        363 SAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSF-------------------EGHTNEVNAIKWD-PQGLLLASC  422 (602)
Q Consensus       363 ~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~-------------------~~~~~~i~~~~~~-~~~~~l~~~  422 (602)
                      ...+....+..+.  ......=..+.|.+.....+...                   .+....+   .-+ |....+++.
T Consensus       156 ~~~~~~~~~~~~~--~~~~~~L~ykKw~l~~~~~i~D~~~~G~~~~~~fd~l~~aS~~gf~a~~---~~s~~~~~~~i~~  230 (415)
T PF14655_consen  156 RNQVARGAASGSD--SPAPPPLSYKKWNLQSQDTINDAAICGPMPPSTFDHLVTASIGGFNAKY---RSSPPRMSRYITV  230 (415)
T ss_pred             HHhhhhhhhcccc--cCCCCccceeEecCCCCCcEeeEEEecCCCCcHHHHHHhhhccccccee---ecCCcceEEEEEe
Confidence            0000000000000  00000001233333322211111                   0011111   111 222345555


Q ss_pred             ECCCeEEEEeCCCCeeeEeec-----cccccEE-----EEEECCCCCCCCC---------CCcceeeeeeeccCCccCCe
Q psy12697        423 SDDMTLKIWSLDKDNCVHDLQ-----AHNKEIY-----TIKWSPTGPETSN---------PNMSLIFILKSTLGQHKGPI  483 (602)
Q Consensus       423 ~~dg~i~iwd~~~~~~~~~~~-----~~~~~i~-----~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~v  483 (602)
                      +.+-.+-.|-...+.....+.     .-...+.     -+.+.........         ............+......+
T Consensus       231 G~~P~v~f~~~~e~~s~~~ls~va~~aVas~l~sav~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~l~D~~R~~  310 (415)
T PF14655_consen  231 GSSPFVSFYYASEGSSQPLLSDVASSAVASKLTSAVSGWLGWGSWRSEQQPQEKQPPEPKPEPAAPLPMRFGLPDSKREG  310 (415)
T ss_pred             cCCceEEEEEccCCCCcccHHHHHHHHHHHHHHhhhHhhcccCCCCCccccccccccccCcCCCcccceEEeeccCCceE
Confidence            666666666554432111110     0000000     0111111000000         00111122334455667778


Q ss_pred             EEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeeecccCCCe----eEeeec-------------CC-c--eEEEeeCCC
Q psy12697        484 FALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPA----LDVDWQ-------------SN-T--SFASCSTDQ  543 (602)
Q Consensus       484 ~~i~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v----~~~~~s-------------~~-~--~l~~~~~d~  543 (602)
                      .+++.+|++++.|+.+.=|.|.++|+.++..++.+++..+.=    ....-.             +. .  .++-+-.-|
T Consensus       311 ~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIyaprRg  390 (415)
T PF14655_consen  311 ESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIYAPRRG  390 (415)
T ss_pred             EEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEEEeccCC
Confidence            999999999999998888999999999999888887654421    111101             11 1  345566789


Q ss_pred             cEEEeecCCCCceeeeec
Q psy12697        544 HIHVCKLHSDKPVKSFEG  561 (602)
Q Consensus       544 ~i~iw~~~~~~~~~~~~~  561 (602)
                      .|.||.++.+..+..+..
T Consensus       391 ~lEvW~~~~g~Rv~a~~v  408 (415)
T PF14655_consen  391 ILEVWSMRQGPRVAAFNV  408 (415)
T ss_pred             eEEEEecCCCCEEEEEEe
Confidence            999999887766665543

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=98.11  E-value=0.0032  Score=58.27  Aligned_cols=214  Identities=9%  Similarity=0.080  Sum_probs=126.8

Q ss_pred             eeCCCCC-eEEEEeCCCeEEEEcCCCcceeecccccCCeEEEEEccCCCEEEEEecCCcEEEEeCCCCceeEEeee----
Q psy12697        287 DWNNNGS-FLATGSYDGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSF----  361 (602)
Q Consensus       287 ~~~~~~~-~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~----  361 (602)
                      .|.++.. ++.+--..+.|.-|+........+.... .+.++..-..+..|+++..  .+.+++.+++.....+..    
T Consensus        31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~~~~p~-~~~~~~~~d~~g~Lv~~~~--g~~~~~~~~~~~~t~~~~~~~~  107 (307)
T COG3386          31 VWDPDRGALLWVDILGGRIHRLDPETGKKRVFPSPG-GFSSGALIDAGGRLIACEH--GVRLLDPDTGGKITLLAEPEDG  107 (307)
T ss_pred             cCcCCCCEEEEEeCCCCeEEEecCCcCceEEEECCC-CcccceeecCCCeEEEEcc--ccEEEeccCCceeEEeccccCC
Confidence            4666666 4445556678888888654444444333 3444444444445555432  366667665555322211    


Q ss_pred             -ccCCeeeeeccCCCeEEEeeCC------------CeEEEEEcCCCceeeEeccCCCCeEEEEECCCCCEEEEEECC-Ce
Q psy12697        362 -HSAPALDVDWQSNTSFASCSTD------------QHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDD-MT  427 (602)
Q Consensus       362 -~~~~~~~~~~~~~~~~~~~~~~------------~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-g~  427 (602)
                       ......+....+++.+.++...            |.++.+|. .+..++.+..+-..-+.++||||++.|..+... +.
T Consensus       108 ~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~  186 (307)
T COG3386         108 LPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANR  186 (307)
T ss_pred             CCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCe
Confidence             1233455666777777776655            33444443 455566666656667889999999888877654 77


Q ss_pred             EEEEeCCCCeeeEeeccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCCC-eEEE
Q psy12697        428 LKIWSLDKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDK-TTII  506 (602)
Q Consensus       428 i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg-~i~i  506 (602)
                      |.-|++..    ........ ...+.+                      ....+..-.++...+|.+-+++..+| .|.+
T Consensus       187 i~r~~~d~----~~g~~~~~-~~~~~~----------------------~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~  239 (307)
T COG3386         187 IHRYDLDP----ATGPIGGR-RGFVDF----------------------DEEPGLPDGMAVDADGNLWVAAVWGGGRVVR  239 (307)
T ss_pred             EEEEecCc----ccCccCCc-ceEEEc----------------------cCCCCCCCceEEeCCCCEEEecccCCceEEE
Confidence            88887753    00110010 001111                      01223334566777888876555554 8999


Q ss_pred             EeCCCCceeeeecccCCCeeEeeecC
Q psy12697        507 WDAASGQCEQQFSFHSAPALDVDWQS  532 (602)
Q Consensus       507 wd~~~~~~~~~~~~~~~~v~~~~~s~  532 (602)
                      |+.. |+++..+..+...+++++|--
T Consensus       240 ~~pd-G~l~~~i~lP~~~~t~~~FgG  264 (307)
T COG3386         240 FNPD-GKLLGEIKLPVKRPTNPAFGG  264 (307)
T ss_pred             ECCC-CcEEEEEECCCCCCccceEeC
Confidence            9988 999999888778888999854

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=98.11  E-value=0.00057  Score=66.46  Aligned_cols=178  Identities=25%  Similarity=0.222  Sum_probs=112.3

Q ss_pred             ccceeeeecccceeeeeeeccCCceEEEEECCCCCeEEEee---CC-ceEEEEecCCceeEEEeeccCceEEEEeCCCCC
Q psy12697        119 RLTLPLWDVERGECLNTLTRHTEPVYSVAFSPDGKFLASGS---FD-KCVHIWSARTGQLVHSYKGTGGIFEVCWNSRGT  194 (602)
Q Consensus       119 ~~~i~vwd~~~~~~~~~l~~h~~~V~~~~~s~d~~~l~s~~---~d-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (602)
                      ...+.+=|.. |...+.+..-...+..-+|+|+++.++-.+   .. ..+.++++.+++......               
T Consensus       172 ~~~l~~~D~d-g~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~---------------  235 (425)
T COG0823         172 PYELALGDYD-GYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN---------------  235 (425)
T ss_pred             CceEEEEccC-CcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec---------------
Confidence            3455555655 777777777778888889999999776653   22 468888988876543221               


Q ss_pred             CCCCCCCccccccccccCCcceEeeCCCcceEEEEEcCCCCEEEE-eeCCCcEEEE--eCCCCCCCCCccceEEEEEEec
Q psy12697        195 PPNPPESMEVDASIEIPQSKATKLIGHESEVFICAWNPVKDFLAS-GSGDSTARIW--DMTDSTKKDPKELQIVLRHCIS  271 (602)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~s-~~~dg~i~iw--~~~~~~~~~~~~~~~~~~~~~~  271 (602)
                                                ..+.-..-+|+|||+.|+. ...||...||  |+.......   +.   .    
T Consensus       236 --------------------------~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~~---Lt---~----  279 (425)
T COG0823         236 --------------------------FNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLPR---LT---N----  279 (425)
T ss_pred             --------------------------cCCccCCccCCCCCCEEEEEECCCCCccEEEEcCCCCccee---cc---c----
Confidence                                      1222334589999976665 4557765555  554443111   00   0    


Q ss_pred             CCCcccCCCCceeEEeeCCCCCeEEEEeCC-C--eEEEEcCCCcceeecccccCCeEEEEEccCCCEEEEEecC-Cc--E
Q psy12697        272 KGGTEVPSNKDVTSLDWNNNGSFLATGSYD-G--YARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVD-KT--T  345 (602)
Q Consensus       272 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-g--~i~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-g~--i  345 (602)
                             ..+.-+.=.|+|||+.++..+.. |  .|.+++.++.....+......-..-.|+|||++|+..+.. |.  |
T Consensus       280 -------~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~~~~~~~~p~~SpdG~~i~~~~~~~g~~~i  352 (425)
T COG0823         280 -------GFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTFSGGGNSNPVWSPDGDKIVFESSSGGQWDI  352 (425)
T ss_pred             -------CCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEeeccCCCCcCccCCCCCCEEEEEeccCCceee
Confidence                   01222356799999998877654 3  5777777777665555444444478899999999877643 43  5


Q ss_pred             EEEeCCCCce
Q psy12697        346 IIWDAASGQC  355 (602)
Q Consensus       346 ~~wd~~~~~~  355 (602)
                      .+.|+.++..
T Consensus       353 ~~~~~~~~~~  362 (425)
T COG0823         353 DKNDLASGGK  362 (425)
T ss_pred             EEeccCCCCc
Confidence            5666655543

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=98.05  E-value=0.011  Score=55.36  Aligned_cols=242  Identities=14%  Similarity=0.124  Sum_probs=105.1

Q ss_pred             ecccceeeeeeeccCCceEEE-----EECCCCCeEEEeeC-C--ceEEEEecCCceeEEEeeccCceEEEEeCCCCCCCC
Q psy12697        126 DVERGECLNTLTRHTEPVYSV-----AFSPDGKFLASGSF-D--KCVHIWSARTGQLVHSYKGTGGIFEVCWNSRGTPPN  197 (602)
Q Consensus       126 d~~~~~~~~~l~~h~~~V~~~-----~~s~d~~~l~s~~~-d--~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  197 (602)
                      |..||..+.+|..+...-..+     +|.+||+.|+.++. |  ..+.+-|+.+++..+--.+.                
T Consensus        16 D~~TG~~VtrLT~~~~~~h~~YF~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~----------------   79 (386)
T PF14583_consen   16 DPDTGHRVTRLTPPDGHSHRLYFYQNCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGP----------------   79 (386)
T ss_dssp             -TTT--EEEE-S-TTS-EE---TTS--B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS----------------
T ss_pred             CCCCCceEEEecCCCCcccceeecCCCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCC----------------
Confidence            677888888887655443333     66789977766554 4  45667788888766432211                


Q ss_pred             CCCCccccccccccCCcceEeeCCCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCccc
Q psy12697        198 PPESMEVDASIEIPQSKATKLIGHESEVFICAWNPVKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEV  277 (602)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (602)
                                              ........++|+++.++-......++--|+.+.+........              
T Consensus        80 ------------------------g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p--------------  121 (386)
T PF14583_consen   80 ------------------------GDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEVP--------------  121 (386)
T ss_dssp             -------------------------B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE----------------
T ss_pred             ------------------------CCCccceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEECC--------------
Confidence                                    111223456677777766555567777777775431111100              


Q ss_pred             CCCCceeEEee--CCCCCeEEEEeC----------------------CCeEEEEcCCCcceeecccccCCeEEEEEccCC
Q psy12697        278 PSNKDVTSLDW--NNNGSFLATGSY----------------------DGYARIWTSDGSLKSTLGQHKGPIFALKWNKRG  333 (602)
Q Consensus       278 ~~~~~i~~~~~--~~~~~~l~~~~~----------------------dg~i~i~~~~~~~~~~~~~~~~~i~~~~~~~~~  333 (602)
                        ..-+-...|  +.++..++-.-.                      ...|...|+.+.....+......+..+.|+|..
T Consensus       122 --~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~~~wlgH~~fsP~d  199 (386)
T PF14583_consen  122 --DDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFEDTDWLGHVQFSPTD  199 (386)
T ss_dssp             --TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEEESS-EEEEEEETTE
T ss_pred             --cccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEecCccccCcccCCCC
Confidence              122222334  334444332211                      123334455544455555556678899999977


Q ss_pred             CEEEEEecCC-----cEEEEeCCC-CceeEEeeecc--CCeeeeeccCCCeE---EEe---eCCCeEEEEEcCCCceeeE
Q psy12697        334 NYILSAGVDK-----TTIIWDAAS-GQCEQQFSFHS--APALDVDWQSNTSF---ASC---STDQHIHVCKLHSDKPVKS  399 (602)
Q Consensus       334 ~~l~~~~~dg-----~i~~wd~~~-~~~~~~~~~~~--~~~~~~~~~~~~~~---~~~---~~~~~i~i~d~~~~~~~~~  399 (602)
                      ..+++=+..|     .-+||-+.+ +...+.+..+.  ..+.---|.+++..   ...   +.+..|.-+|+.+++....
T Consensus       200 p~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~  279 (386)
T PF14583_consen  200 PTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERRRL  279 (386)
T ss_dssp             EEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--EEEE
T ss_pred             CCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCCCCCceEE
Confidence            6666654433     124553332 22223322222  12233356676541   112   2233566778887765332


Q ss_pred             eccCCCCeEEEEECCCCCEEEEEECC
Q psy12697        400 FEGHTNEVNAIKWDPQGLLLASCSDD  425 (602)
Q Consensus       400 ~~~~~~~i~~~~~~~~~~~l~~~~~d  425 (602)
                      ..  ......+-.++||++++-=+.|
T Consensus       280 ~~--~p~~~H~~ss~Dg~L~vGDG~d  303 (386)
T PF14583_consen  280 ME--MPWCSHFMSSPDGKLFVGDGGD  303 (386)
T ss_dssp             EE--E-SEEEEEE-TTSSEEEEEE--
T ss_pred             Ee--CCceeeeEEcCCCCEEEecCCC
Confidence            22  2245566778899887654444

>KOG1008|consensus

Probab=98.05  E-value=1.7e-06  Score=82.91  Aligned_cols=203  Identities=21%  Similarity=0.230  Sum_probs=131.9

Q ss_pred             CCceEEEEECCCC--CeEEEeeCCceEEEEecCCceeEEEeeccCceEEEEeCCCCCCCCCCCCccccccccccCCcceE
Q psy12697        140 TEPVYSVAFSPDG--KFLASGSFDKCVHIWSARTGQLVHSYKGTGGIFEVCWNSRGTPPNPPESMEVDASIEIPQSKATK  217 (602)
Q Consensus       140 ~~~V~~~~~s~d~--~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  217 (602)
                      ...+.|++..-+.  ..++.|..+|.|.+-.++...--                                      ....
T Consensus        56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdS--------------------------------------s~E~   97 (783)
T KOG1008|consen   56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDS--------------------------------------SAEV   97 (783)
T ss_pred             CCCceeehhhcCCchhhhhhccccCceEEeecCCcccc--------------------------------------ccee
Confidence            3455666665533  47788888898888766432210                                      0133


Q ss_pred             eeCCCcceEEEEEcCCC-CEEEEee----CCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEeeCCCC
Q psy12697        218 LIGHESEVFICAWNPVK-DFLASGS----GDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNG  292 (602)
Q Consensus       218 l~~h~~~v~~~~~~~~~-~~l~s~~----~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  292 (602)
                      ..+|....++++|++-+ +.||+|-    .|..+.|||+.+.-...........           .......+++|..+.
T Consensus        98 tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~-----------~~l~gqns~cwlrd~  166 (783)
T KOG1008|consen   98 TPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSS-----------STLDGQNSVCWLRDT  166 (783)
T ss_pred             cccccccccccccccccHHHHHhhhhhhcccCCccceecccccCCCcccccccc-----------ccccCccccccccCc
Confidence            45678889999999854 6677663    3678999999887432211111000           012445688999999


Q ss_pred             CeEEEEeCCCeEEEEcCCCcceeecccccCCeEEEEEcc-CCCEEEEEecCCcEEEEeC-CCCc-eeEEeee----ccCC
Q psy12697        293 SFLATGSYDGYARIWTSDGSLKSTLGQHKGPIFALKWNK-RGNYILSAGVDKTTIIWDA-ASGQ-CEQQFSF----HSAP  365 (602)
Q Consensus       293 ~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~~wd~-~~~~-~~~~~~~----~~~~  365 (602)
                      +++.+|.....+.++|++.............+..+...| .++++++-. ||.|.+||. +.-+ .+..+..    ....
T Consensus       167 klvlaGm~sr~~~ifdlRqs~~~~~svnTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~  245 (783)
T KOG1008|consen  167 KLVLAGMTSRSVHIFDLRQSLDSVSSVNTKYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQ  245 (783)
T ss_pred             chhhcccccchhhhhhhhhhhhhhhhhhhhhcccceecCCCCCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccc
Confidence            999999999999999988555444444455677788888 677777665 999999994 2222 1111211    1224


Q ss_pred             eeeeeccCC--CeEEEeeCC-CeEEEEEcC
Q psy12697        366 ALDVDWQSN--TSFASCSTD-QHIHVCKLH  392 (602)
Q Consensus       366 ~~~~~~~~~--~~~~~~~~~-~~i~i~d~~  392 (602)
                      +..++|.|-  +.+++...| ++|+.+|+.
T Consensus       246 l~~~aycPtrtglla~l~RdS~tIrlydi~  275 (783)
T KOG1008|consen  246 LFALAYCPTRTGLLAVLSRDSITIRLYDIC  275 (783)
T ss_pred             eeeEEeccCCcchhhhhccCcceEEEeccc
Confidence            788888875  556666654 789999975

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=98.04  E-value=0.0084  Score=55.72  Aligned_cols=240  Identities=15%  Similarity=0.153  Sum_probs=131.3

Q ss_pred             CCCCeEEEeeCCceEEEEecCCceeEEEeeccCceEEEEeCCCCCCCCCCCCccccccccccCCcceEeeCCCcceEEEE
Q psy12697        150 PDGKFLASGSFDKCVHIWSARTGQLVHSYKGTGGIFEVCWNSRGTPPNPPESMEVDASIEIPQSKATKLIGHESEVFICA  229 (602)
Q Consensus       150 ~d~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~  229 (602)
                      ..++.|+.|..+| +.+++.........                                         ..+...|..+.
T Consensus         5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~-----------------------------------------i~~~~~I~ql~   42 (275)
T PF00780_consen    5 SWGDRLLVGTEDG-LYVYDLSDPSKPTR-----------------------------------------ILKLSSITQLS   42 (275)
T ss_pred             cCCCEEEEEECCC-EEEEEecCCcccee-----------------------------------------EeecceEEEEE
Confidence            3578899999988 88888822221111                                         11233489999


Q ss_pred             EcCCCCEEEEeeCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEe--eCCCCCeEEEEeCCCeEEEE
Q psy12697        230 WNPVKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLD--WNNNGSFLATGSYDGYARIW  307 (602)
Q Consensus       230 ~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~--~~~~~~~l~~~~~dg~i~i~  307 (602)
                      ..|+-+.|++-+ |+.+.++++..-..............  .......+....+..++  -...+...++......|.+|
T Consensus        43 vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~  119 (275)
T PF00780_consen   43 VLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKS--RSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIY  119 (275)
T ss_pred             EecccCEEEEEc-CCccEEEEchhhcccccccccccccc--ccccccccccCCeeEEeeccccccceEEEEEECCEEEEE
Confidence            999887777765 49999999987655432210000000  00001112234455555  12233334444445588887


Q ss_pred             cCCC------cceeecccccCCeEEEEEccCCCEEEEEecCCcEEEEeCCCCceeEEeeecc------------CCeeee
Q psy12697        308 TSDG------SLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHS------------APALDV  369 (602)
Q Consensus       308 ~~~~------~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~------------~~~~~~  369 (602)
                      ....      ...+.+ .....+..++|.  ++.++.+..+ ...+.|+.++.....+....            .++..+
T Consensus       120 ~~~~~~~~f~~~~ke~-~lp~~~~~i~~~--~~~i~v~~~~-~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  195 (275)
T PF00780_consen  120 EWNDPRNSFSKLLKEI-SLPDPPSSIAFL--GNKICVGTSK-GFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIF  195 (275)
T ss_pred             EEECCcccccceeEEE-EcCCCcEEEEEe--CCEEEEEeCC-ceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEE
Confidence            7543      122222 345778899998  5567777644 58888998776554432221            122222


Q ss_pred             eccCCCeEEEeeCCCeEEEEEcCCCceee--EeccCCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeeeEeeccc
Q psy12697        370 DWQSNTSFASCSTDQHIHVCKLHSDKPVK--SFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHDLQAH  445 (602)
Q Consensus       370 ~~~~~~~~~~~~~~~~i~i~d~~~~~~~~--~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~  445 (602)
                      . .+++.++.+..+ .-.+.|. .|++.+  .+. -...+.++++.  ..+|+..+. +.|.||++.+++.++++...
T Consensus       196 ~-~~~~e~Ll~~~~-~g~fv~~-~G~~~r~~~i~-W~~~p~~~~~~--~pyli~~~~-~~iEV~~~~~~~lvQ~i~~~  266 (275)
T PF00780_consen  196 Q-LSDNEFLLCYDN-IGVFVNK-NGEPSRKSTIQ-WSSAPQSVAYS--SPYLIAFSS-NSIEVRSLETGELVQTIPLP  266 (275)
T ss_pred             E-eCCceEEEEecc-eEEEEcC-CCCcCcccEEE-cCCchhEEEEE--CCEEEEECC-CEEEEEECcCCcEEEEEECC
Confidence            2 233455554432 2222333 333322  222 12345566663  347777665 45999999999998888654

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=98.03  E-value=0.0054  Score=60.02  Aligned_cols=186  Identities=11%  Similarity=0.128  Sum_probs=99.5

Q ss_pred             cEEEEeCCCCceeEEeeeccCCeeeeeccCCCeEEEeeCCCeEEEEEcCCCc------eeeEeccCCCCeEEEEECCCCC
Q psy12697        344 TTIIWDAASGQCEQQFSFHSAPALDVDWQSNTSFASCSTDQHIHVCKLHSDK------PVKSFEGHTNEVNAIKWDPQGL  417 (602)
Q Consensus       344 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~------~~~~~~~~~~~i~~~~~~~~~~  417 (602)
                      .|.+|+. .|+.+..+......+..+.|..+..+++...||.+++||+....      .+....-....+....+..+|-
T Consensus        62 ~I~iys~-sG~ll~~i~w~~~~iv~~~wt~~e~LvvV~~dG~v~vy~~~G~~~fsl~~~i~~~~v~e~~i~~~~~~~~Gi  140 (410)
T PF04841_consen   62 SIQIYSS-SGKLLSSIPWDSGRIVGMGWTDDEELVVVQSDGTVRVYDLFGEFQFSLGEEIEEEKVLECRIFAIWFYKNGI  140 (410)
T ss_pred             EEEEECC-CCCEeEEEEECCCCEEEEEECCCCeEEEEEcCCEEEEEeCCCceeechhhhccccCcccccccccccCCCCE
Confidence            3667764 35556666555588999999999999999999999999986433      1111111112222233333553


Q ss_pred             EEEEEECCCeEEEEeCCCCe-eeEeeccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEE
Q psy12697        418 LLASCSDDMTLKIWSLDKDN-CVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYIL  496 (602)
Q Consensus       418 ~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~  496 (602)
                      .+.  ..++.+.+.+--... ....+...........                        .+.....-..++.+....+
T Consensus       141 vvL--t~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~------------------------~~~~~~~i~~l~~~~~~~i  194 (410)
T PF04841_consen  141 VVL--TGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFH------------------------WWPSWTVIPLLSSDRVVEI  194 (410)
T ss_pred             EEE--CCCCeEEEEeCccccchhhccccCCCcccccc------------------------cccccccceEeecCcceEE
Confidence            232  334444433211111 1111110000000000                        0000000133455555666


Q ss_pred             EEeCCCeEEEEeCCCCceeeeecccCCCeeEeeecCCc-eEEEeeCCCcEEEeecCCCCceeeee
Q psy12697        497 SAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNT-SFASCSTDQHIHVCKLHSDKPVKSFE  560 (602)
Q Consensus       497 s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~-~l~~~~~d~~i~iw~~~~~~~~~~~~  560 (602)
                      ....++.+.+-+-...+.   +. ..+++..++.||++ .+|.-..+|.+.|...+-.+....+.
T Consensus       195 ~~~~g~~i~~i~~~~~~~---i~-~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~  255 (410)
T PF04841_consen  195 LLANGETIYIIDENSFKQ---ID-SDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFD  255 (410)
T ss_pred             EEecCCEEEEEEcccccc---cc-CCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEee
Confidence            666666676444332211   22 24689999999999 88888899999998765555544443

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=98.03  E-value=0.00097  Score=64.89  Aligned_cols=191  Identities=19%  Similarity=0.251  Sum_probs=116.6

Q ss_pred             eEeeCCCcceEEEEEcCCCCEEEEe---eCC-CcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEeeCCC
Q psy12697        216 TKLIGHESEVFICAWNPVKDFLASG---SGD-STARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNN  291 (602)
Q Consensus       216 ~~l~~h~~~v~~~~~~~~~~~l~s~---~~d-g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  291 (602)
                      ..+......+..-+|+|++..++..   ... ..+.++++.++.......                 ..+.-..-+|+||
T Consensus       186 ~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-----------------~~g~~~~P~fspD  248 (425)
T COG0823         186 QKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-----------------FNGNNGAPAFSPD  248 (425)
T ss_pred             eEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-----------------cCCccCCccCCCC
Confidence            4444455667778899999765544   223 458899998876543222                 1244556789999


Q ss_pred             CCeEEEEe-CCC--eEEEEcCCCcceeecccccCCeEEEEEccCCCEEEEEec-CC--cEEEEeCCCCceeEEeeeccCC
Q psy12697        292 GSFLATGS-YDG--YARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGV-DK--TTIIWDAASGQCEQQFSFHSAP  365 (602)
Q Consensus       292 ~~~l~~~~-~dg--~i~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg--~i~~wd~~~~~~~~~~~~~~~~  365 (602)
                      |+.++... .||  .|.++|+.++....+....+.-..-.|+|||++++-.+. .|  .|.+.+.+.+.. ..+......
T Consensus       249 G~~l~f~~~rdg~~~iy~~dl~~~~~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT~~~~~  327 (425)
T COG0823         249 GSKLAFSSSRDGSPDIYLMDLDGKNLPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV-TRLTFSGGG  327 (425)
T ss_pred             CCEEEEEECCCCCccEEEEcCCCCcceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce-eEeeccCCC
Confidence            98877654 455  466667777666555555554557789999999886653 44  456667665554 334333333


Q ss_pred             eeeeeccCCCeEEEeeC--CCe--EEEEEcCCCceeeEeccCCCCeEEEEECCCCCEEEEEECC
Q psy12697        366 ALDVDWQSNTSFASCST--DQH--IHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDD  425 (602)
Q Consensus       366 ~~~~~~~~~~~~~~~~~--~~~--i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d  425 (602)
                      -..-.|+|++..++...  +|.  |.+.|+.++...+.+. +......-.+.|+++.+...+..
T Consensus       328 ~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt-~~~~~e~ps~~~ng~~i~~~s~~  390 (425)
T COG0823         328 NSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGKIRILT-STYLNESPSWAPNGRMIMFSSGQ  390 (425)
T ss_pred             CcCccCCCCCCEEEEEeccCCceeeEEeccCCCCcEEEcc-ccccCCCCCcCCCCceEEEeccC
Confidence            33777888876443332  454  6666666655433332 33334455677888777665543

>KOG1897|consensus

Probab=97.94  E-value=0.036  Score=57.36  Aligned_cols=363  Identities=12%  Similarity=0.143  Sum_probs=189.3

Q ss_pred             ceEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEeeCCCCCeEEEEeCCCe
Q psy12697        224 EVFICAWNPVKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFLATGSYDGY  303 (602)
Q Consensus       224 ~v~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~  303 (602)
                      .|.-..|-.|..+|.++..||.+.-+.+.............            .-...++.--.|+..++.-+.+..|.-
T Consensus       585 SIl~~~~e~d~~yLlvalgdG~l~~fv~d~~tg~lsd~Kk~------------~lGt~P~~Lr~f~sk~~t~vfa~sdrP  652 (1096)
T KOG1897|consen  585 SILLTTFEGDIHYLLVALGDGALLYFVLDINTGQLSDRKKV------------TLGTQPISLRTFSSKSRTAVFALSDRP  652 (1096)
T ss_pred             heeeEEeeccceEEEEEcCCceEEEEEEEcccceEcccccc------------ccCCCCcEEEEEeeCCceEEEEeCCCC
Confidence            45556666678899999999999877665443221110000            001245555566666555555666666


Q ss_pred             EEEEcCCCcceeecccccCCeEEEEEccC--CCEEEEEecCCcEEEEeCCCCce--eEEeeeccCCeeeeeccCCCe-EE
Q psy12697        304 ARIWTSDGSLKSTLGQHKGPIFALKWNKR--GNYILSAGVDKTTIIWDAASGQC--EQQFSFHSAPALDVDWQSNTS-FA  378 (602)
Q Consensus       304 i~i~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~dg~i~~wd~~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~  378 (602)
                      ..+|..++++..+--.-+.--.-+.|+.+  ...++++. .+.+++.-+..-+.  .++.. -......+++.+... +.
T Consensus       653 ~viY~~n~kLv~spls~kev~~~c~f~s~a~~d~l~~~~-~~~l~i~tid~iqkl~irtvp-l~~~prrI~~q~~sl~~~  730 (1096)
T KOG1897|consen  653 TVIYSSNGKLVYSPLSLKEVNHMCPFNSDAYPDSLASAN-GGALTIGTIDEIQKLHIRTVP-LGESPRRICYQESSLTFG  730 (1096)
T ss_pred             EEEEecCCcEEEeccchHHhhhhcccccccCCceEEEec-CCceEEEEecchhhcceeeec-CCCChhheEecccceEEE
Confidence            66676666554432221111111222221  23455544 44566655443222  12222 223344455554322 22


Q ss_pred             Eee-----------CC---CeEEEEEcCCCceeeEeccCC-C---CeEEEEECCC-CCEEEEEEC----------CCeEE
Q psy12697        379 SCS-----------TD---QHIHVCKLHSDKPVKSFEGHT-N---EVNAIKWDPQ-GLLLASCSD----------DMTLK  429 (602)
Q Consensus       379 ~~~-----------~~---~~i~i~d~~~~~~~~~~~~~~-~---~i~~~~~~~~-~~~l~~~~~----------dg~i~  429 (602)
                      +.+           ..   ..++++|-++.+.+...+-.. .   .|.+..|..| +.++++|..          .|+|.
T Consensus       731 v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIi  810 (1096)
T KOG1897|consen  731 VLSNRIESSAEYYGEEYEVSFLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRII  810 (1096)
T ss_pred             EEecccccchhhcCCcceEEEEEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEE
Confidence            211           12   135666666655443322111 1   3455557776 678887762          47888


Q ss_pred             EEeCCCCeeeEeeccc--cccEEEEEECCCCCCCCC-CCcceeeeeee-----ccCCccCCeEEEEEccCCCEEEEEeCC
Q psy12697        430 IWSLDKDNCVHDLQAH--NKEIYTIKWSPTGPETSN-PNMSLIFILKS-----TLGQHKGPIFALKWNKRGNYILSAGVD  501 (602)
Q Consensus       430 iwd~~~~~~~~~~~~~--~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~-----~~~~~~~~v~~i~~s~~~~~l~s~~~d  501 (602)
                      +|.+...+.+.....+  .+.+.++..-. ++.++. ...-..+.+..     ....+..++..+...-.|..++.|..=
T Consensus       811 vfe~~e~~~L~~v~e~~v~Gav~aL~~fn-gkllA~In~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm  889 (1096)
T KOG1897|consen  811 VFEFEELNSLELVAETVVKGAVYALVEFN-GKLLAGINQSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLM  889 (1096)
T ss_pred             EEEEecCCceeeeeeeeeccceeehhhhC-CeEEEecCcEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEEeecc
Confidence            8887764443333222  23333332221 121111 11111111111     122577889999999999999999887


Q ss_pred             CeEEEEeCC--CCceeeeec-ccCCCeeEeeecCCceEEEeeCCCcEEEeecCCCC-------ceeeeecccccceEEEE
Q psy12697        502 KTTIIWDAA--SGQCEQQFS-FHSAPALDVDWQSNTSFASCSTDQHIHVCKLHSDK-------PVKSFEGHTTGQLVHSY  571 (602)
Q Consensus       502 g~i~iwd~~--~~~~~~~~~-~~~~~v~~~~~s~~~~l~~~~~d~~i~iw~~~~~~-------~~~~~~~~~~~~~~~~~  571 (602)
                      +.+.+....  .|.....-+ .+....+++.+-.+..++-+..+|.+++-...+..       .+.......-|+.+..+
T Consensus       890 ~Sitll~y~~~eg~f~evArD~~p~Wmtaveil~~d~ylgae~~gNlf~v~~d~~~~td~eR~~l~~~~~~hlGelvn~f  969 (1096)
T KOG1897|consen  890 RSITLLQYKGDEGNFEEVARDYNPNWMTAVEILDDDTYLGAENSGNLFTVRKDSDATTDEERQILEEVGKFHLGELVNKF  969 (1096)
T ss_pred             ceEEEEEEeccCCceEEeehhhCccceeeEEEecCceEEeecccccEEEEEecCCCCchhhhhcccceeeEEeccceeee
Confidence            777665443  333443322 25667888888777777777888888887765421       11111112234555555


Q ss_pred             ecCCcEEEE--EECCCCCeEEEeccCCeEEee
Q psy12697        572 KGTGGIFEV--CWNSRGDKVGASASDGSVFKN  601 (602)
Q Consensus       572 ~~~~~i~~l--~~spdg~~l~~~~~dg~v~i~  601 (602)
                      .+..-|..+  .-+|-+..+..|+.+|.|-+.
T Consensus       970 ~hg~lv~~~~~s~~~~~~~vlfgTv~GsIG~i 1001 (1096)
T KOG1897|consen  970 RHGSLVMQLGDSMIPLEPKVLFGTVNGSIGII 1001 (1096)
T ss_pred             eecceEeeccccccCCCCcEEEEEccceEEEE
Confidence            554444442  345666778889999987653

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=97.91  E-value=0.0011  Score=49.53  Aligned_cols=102  Identities=15%  Similarity=0.153  Sum_probs=69.8

Q ss_pred             eEEEEEcc---CC-CEEEEEeCCCeEEEEeCCCCceeeeecccCCCeeEeeecCCceEEEeeCCCcEEEeecCCCCceee
Q psy12697        483 IFALKWNK---RG-NYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKS  558 (602)
Q Consensus       483 v~~i~~s~---~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~l~~~~~d~~i~iw~~~~~~~~~~  558 (602)
                      |+++++..   || +.|++|+.|..|++|+-+  +.+.++. ..+.|++++-...+.++.+..+|+|-+|+-.       
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~-e~~~v~~L~~~~~~~F~Y~l~NGTVGvY~~~-------   71 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEIT-ETDKVTSLCSLGGGRFAYALANGTVGVYDRS-------   71 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEEe-cccceEEEEEcCCCEEEEEecCCEEEEEeCc-------
Confidence            44555443   32 579999999999999843  5666666 4567888888777899999999999999731       


Q ss_pred             eecccccceEEEEecCCcEEEEEE-CCC--C-CeEEEeccCCeEEee
Q psy12697        559 FEGHTTGQLVHSYKGTGGIFEVCW-NSR--G-DKVGASASDGSVFKN  601 (602)
Q Consensus       559 ~~~~~~~~~~~~~~~~~~i~~l~~-spd--g-~~l~~~~~dg~v~i~  601 (602)
                             ..++..+....+.++++ ..+  | +-|++|-++|.|-++
T Consensus        72 -------~RlWRiKSK~~~~~~~~~D~~gdG~~eLI~GwsnGkve~R  111 (111)
T PF14783_consen   72 -------QRLWRIKSKNQVTSMAFYDINGDGVPELIVGWSNGKVEVR  111 (111)
T ss_pred             -------ceeeeeccCCCeEEEEEEcCCCCCceEEEEEecCCeEEeC
Confidence                   12222333344666653 333  3 468999999988653

>smart00320 WD40 WD40 repeats

Probab=97.87  E-value=4.5e-05  Score=45.86  Aligned_cols=39  Identities=62%  Similarity=0.951  Sum_probs=35.3

Q ss_pred             ceeeeeeeccCCceEEEEECCCCCeEEEeeCCceEEEEe
Q psy12697        130 GECLNTLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWS  168 (602)
Q Consensus       130 ~~~~~~l~~h~~~V~~~~~s~d~~~l~s~~~d~~v~iwd  168 (602)
                      ++++..+..|...|.++.|++++.++++++.|+.+++|+
T Consensus         2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            356677888999999999999999999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.87  E-value=0.026  Score=56.11  Aligned_cols=243  Identities=14%  Similarity=0.133  Sum_probs=129.0

Q ss_pred             ceEEEEECCCCCeEEEe-eC----CceEEEEecCCceeEEEeeccCceEEEEeCCCCCCCCCCCCccccccccccCCcce
Q psy12697        142 PVYSVAFSPDGKFLASG-SF----DKCVHIWSARTGQLVHSYKGTGGIFEVCWNSRGTPPNPPESMEVDASIEIPQSKAT  216 (602)
Q Consensus       142 ~V~~~~~s~d~~~l~s~-~~----d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  216 (602)
                      .+....+||||++||-+ +.    ...+++.|+++|+.+...                                      
T Consensus       125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~--------------------------------------  166 (414)
T PF02897_consen  125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDG--------------------------------------  166 (414)
T ss_dssp             EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEE--------------------------------------
T ss_pred             EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCc--------------------------------------
Confidence            44568899999998865 33    346999999999776421                                      


Q ss_pred             EeeCCCcceEEEEEcCCCCEEEEeeCCC-----------cEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCc-ee
Q psy12697        217 KLIGHESEVFICAWNPVKDFLASGSGDS-----------TARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKD-VT  284 (602)
Q Consensus       217 ~l~~h~~~v~~~~~~~~~~~l~s~~~dg-----------~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~  284 (602)
                       +.  ...-..+.|.++++.|+....+.           .|..|.+.+......    .+..         .+.... ..
T Consensus       167 -i~--~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~----lvfe---------~~~~~~~~~  230 (414)
T PF02897_consen  167 -IE--NPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQSEDE----LVFE---------EPDEPFWFV  230 (414)
T ss_dssp             -EE--EEESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEEEEETTS-GGG-E----EEEC----------TTCTTSEE
T ss_pred             -cc--ccccceEEEeCCCCEEEEEEeCcccccccCCCCcEEEEEECCCChHhCe----eEEe---------ecCCCcEEE
Confidence             00  00112388888887766654332           366777765432211    0100         011122 56


Q ss_pred             EEeeCCCCCeEEEEeCC----CeEEEEcCCCc-----ceeecccccCCe-EEEEEccCCCEEEEEe---cCCcEEEEeCC
Q psy12697        285 SLDWNNNGSFLATGSYD----GYARIWTSDGS-----LKSTLGQHKGPI-FALKWNKRGNYILSAG---VDKTTIIWDAA  351 (602)
Q Consensus       285 ~~~~~~~~~~l~~~~~d----g~i~i~~~~~~-----~~~~~~~~~~~i-~~~~~~~~~~~l~~~~---~dg~i~~wd~~  351 (602)
                      .+..++++++++.....    ..+.+.+....     ....+......+ ..+... .+.+++...   ..+.|...++.
T Consensus       231 ~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~~~-~~~~yi~Tn~~a~~~~l~~~~l~  309 (414)
T PF02897_consen  231 SVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYVDHH-GDRLYILTNDDAPNGRLVAVDLA  309 (414)
T ss_dssp             EEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEEEEE-TTEEEEEE-TT-TT-EEEEEETT
T ss_pred             EEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEEEcc-CCEEEEeeCCCCCCcEEEEeccc
Confidence            78899999998765443    35777777643     233333333333 334333 333443332   23567777777


Q ss_pred             CCce---eEEeeeccC--CeeeeeccCCCeEEEeeCCC--eEEEEEcCCCceeeEecc-CCCCeEEEEECCCCCEEEEE-
Q psy12697        352 SGQC---EQQFSFHSA--PALDVDWQSNTSFASCSTDQ--HIHVCKLHSDKPVKSFEG-HTNEVNAIKWDPQGLLLASC-  422 (602)
Q Consensus       352 ~~~~---~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~--~i~i~d~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~-  422 (602)
                      ....   ...+..+..  .+..+....+..++....++  .|.++++..+.....+.. ..+.|..+...+++..+... 
T Consensus       310 ~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~~~~~~~~~~~~p~~g~v~~~~~~~~~~~~~~~~  389 (414)
T PF02897_consen  310 DPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRENGSSRLRVYDLDDGKESREIPLPEAGSVSGVSGDFDSDELRFSY  389 (414)
T ss_dssp             STSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEETTEEEEEEEETT-TEEEEEEESSSSSEEEEEES-TT-SEEEEEE
T ss_pred             ccccccceeEEcCCCCceeEEEEEEECCEEEEEEEECCccEEEEEECCCCcEEeeecCCcceEEeccCCCCCCCEEEEEE
Confidence            6653   223333333  35555555556666666665  578889883333333332 33446666656655544332 


Q ss_pred             EC---CCeEEEEeCCCCeee
Q psy12697        423 SD---DMTLKIWSLDKDNCV  439 (602)
Q Consensus       423 ~~---dg~i~iwd~~~~~~~  439 (602)
                      +.   -+++..||+.+++..
T Consensus       390 ss~~~P~~~y~~d~~t~~~~  409 (414)
T PF02897_consen  390 SSFTTPPTVYRYDLATGELT  409 (414)
T ss_dssp             EETTEEEEEEEEETTTTCEE
T ss_pred             eCCCCCCEEEEEECCCCCEE
Confidence            21   367888888887643

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>smart00667 LisH Lissencephaly type-1-like homology motif

Probab=97.78  E-value=3.2e-06  Score=49.28  Aligned_cols=31  Identities=35%  Similarity=0.550  Sum_probs=28.4

Q ss_pred             ccchhhhhhhhhhhcCceeeeeccccccCCc
Q psy12697          5 SDEVNFLVYRYLQESGFQHSAYTFGIESHIS   35 (602)
Q Consensus         5 s~e~n~li~ryL~e~g~~~~a~~~~~e~~~~   35 (602)
                      ..+++.+|++||+++||.+||.+|.+|+++.
T Consensus         3 ~~~l~~lI~~yL~~~g~~~ta~~l~~e~~~~   33 (34)
T smart00667        3 RSELNRLILEYLLRNGYEETAETLQKESGLS   33 (34)
T ss_pred             HHHHHHHHHHHHHHcCHHHHHHHHHHHhCCC
Confidence            4689999999999999999999999998864

Alpha-helical motif present in Lis1, treacle, Nopp140, some katanin p60 subunits, muskelin, tonneau, LEUNIG and numerous WD40 repeat-containing proteins. It is suggested that LisH motifs contribute to the regulation of microtubule dynamics, either by mediating dimerisation, or else by binding cytoplasmic dynein heavy chain or microtubules directly.

>KOG1008|consensus

Probab=97.77  E-value=1.3e-05  Score=77.16  Aligned_cols=199  Identities=17%  Similarity=0.255  Sum_probs=126.3

Q ss_pred             CCcceEEEEEcCCC--CEEEEeeCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEeeCC-CCCeEEE
Q psy12697        221 HESEVFICAWNPVK--DFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNN-NGSFLAT  297 (602)
Q Consensus       221 h~~~v~~~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~  297 (602)
                      ....+.|+++.-+.  ..++.|..+|.|.+-.+........              ....++..++++++|++ |.+.||+
T Consensus        55 dtqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~--------------E~tp~~ar~Ct~lAwneLDtn~LAa  120 (783)
T KOG1008|consen   55 DTQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSA--------------EVTPGYARPCTSLAWNELDTNHLAA  120 (783)
T ss_pred             cCCCceeehhhcCCchhhhhhccccCceEEeecCCcccccc--------------eecccccccccccccccccHHHHHh
Confidence            34567777776544  4788899999999988765443211              11123457899999999 6677777


Q ss_pred             EeC----CCeEEEEcCCCcce-----eecc-cccCCeEEEEEccCCCEEEEEecCCcEEEEeCCCCceeEEeeeccCCee
Q psy12697        298 GSY----DGYARIWTSDGSLK-----STLG-QHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPAL  367 (602)
Q Consensus       298 ~~~----dg~i~i~~~~~~~~-----~~~~-~~~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~  367 (602)
                      |-.    |..+.|||+.....     ..+. +......+++|..+.+.+++|.....+.++|++... ..........+.
T Consensus       121 gldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~-~~~~svnTk~vq  199 (783)
T KOG1008|consen  121 GLDKHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSL-DSVSSVNTKYVQ  199 (783)
T ss_pred             hhhhhcccCCccceecccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhh-hhhhhhhhhhcc
Confidence            743    46799999764311     1111 133445688999888889999999999999987321 111122233344


Q ss_pred             eeeccC-CCeEEEeeCCCeEEEEE-cCCC-ceeeEeccCCC----CeEEEEECCCC-CEEEEEEC-CCeEEEEeCC
Q psy12697        368 DVDWQS-NTSFASCSTDQHIHVCK-LHSD-KPVKSFEGHTN----EVNAIKWDPQG-LLLASCSD-DMTLKIWSLD  434 (602)
Q Consensus       368 ~~~~~~-~~~~~~~~~~~~i~i~d-~~~~-~~~~~~~~~~~----~i~~~~~~~~~-~~l~~~~~-dg~i~iwd~~  434 (602)
                      .+...| ...+++...||.|.+|| .+.- .++..+.....    .+..++|.|.. ..+++... .++|+++|+.
T Consensus       200 G~tVdp~~~nY~cs~~dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~  275 (783)
T KOG1008|consen  200 GITVDPFSPNYFCSNSDGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDIC  275 (783)
T ss_pred             cceecCCCCCceeccccCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEeccc
Confidence            455555 34455666699999999 3332 33333332222    48899999943 24555554 5789999985

>KOG1897|consensus

Probab=97.68  E-value=0.097  Score=54.36  Aligned_cols=319  Identities=12%  Similarity=0.146  Sum_probs=157.2

Q ss_pred             CCcceEEEEEcCCC------CEEEEeeCCCcEEEEeCC-CCCCCCCccceEEEEEEecCCCcccCCCCceeEEeeCCCCC
Q psy12697        221 HESEVFICAWNPVK------DFLASGSGDSTARIWDMT-DSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGS  293 (602)
Q Consensus       221 h~~~v~~~~~~~~~------~~l~s~~~dg~i~iw~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  293 (602)
                      -...|.|+.++|-+      ++++.|..+..+.+--.. +.....         + ........  ...|....+-.|..
T Consensus       529 ~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~---------~-~~l~~~~i--PRSIl~~~~e~d~~  596 (1096)
T KOG1897|consen  529 FEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILIT---------H-EQLSGEII--PRSILLTTFEGDIH  596 (1096)
T ss_pred             ecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceee---------e-eccCCCcc--chheeeEEeeccce
Confidence            35678999999753      267777776655544322 111100         0 00011111  24466666767788


Q ss_pred             eEEEEeCCCeEEEEcCCC---cceeec--ccccCCeEEEEEccCCCEEEEEecCCcEEEEeCCCCceeEEeeeccCCeee
Q psy12697        294 FLATGSYDGYARIWTSDG---SLKSTL--GQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALD  368 (602)
Q Consensus       294 ~l~~~~~dg~i~i~~~~~---~~~~~~--~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~  368 (602)
                      +|.++..||.+..|.++.   ......  .-...++.--.|+..++.-+.+..|.-..+|..+..-+...+...  .+..
T Consensus       597 yLlvalgdG~l~~fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n~kLv~spls~k--ev~~  674 (1096)
T KOG1897|consen  597 YLLVALGDGALLYFVLDINTGQLSDRKKVTLGTQPISLRTFSSKSRTAVFALSDRPTVIYSSNGKLVYSPLSLK--EVNH  674 (1096)
T ss_pred             EEEEEcCCceEEEEEEEcccceEccccccccCCCCcEEEEEeeCCceEEEEeCCCCEEEEecCCcEEEeccchH--Hhhh
Confidence            999999999988876542   111111  122345555566655544444445666666654332222222111  1111


Q ss_pred             ee-ccCC--CeEEEeeCCCeEEEEEcCCCce--eeEeccCCCCeEEEEECCCCCEEEEEECCC--------------eEE
Q psy12697        369 VD-WQSN--TSFASCSTDQHIHVCKLHSDKP--VKSFEGHTNEVNAIKWDPQGLLLASCSDDM--------------TLK  429 (602)
Q Consensus       369 ~~-~~~~--~~~~~~~~~~~i~i~d~~~~~~--~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg--------------~i~  429 (602)
                      ++ |+.+  ...++....+.+.+..+..-+.  ++++. -......+++.+....+++.+...              .++
T Consensus       675 ~c~f~s~a~~d~l~~~~~~~l~i~tid~iqkl~irtvp-l~~~prrI~~q~~sl~~~v~s~r~e~~~~~~~ee~~~s~l~  753 (1096)
T KOG1897|consen  675 MCPFNSDAYPDSLASANGGALTIGTIDEIQKLHIRTVP-LGESPRRICYQESSLTFGVLSNRIESSAEYYGEEYEVSFLR  753 (1096)
T ss_pred             hcccccccCCceEEEecCCceEEEEecchhhcceeeec-CCCChhheEecccceEEEEEecccccchhhcCCcceEEEEE
Confidence            11 2222  2234444556666666554322  23332 233466778877555555554321              234


Q ss_pred             EEeCCCCeeeEeeccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccC-CCEEEEEeC--------
Q psy12697        430 IWSLDKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKR-GNYILSAGV--------  500 (602)
Q Consensus       430 iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~-~~~l~s~~~--------  500 (602)
                      ++|-.+.+.+...+-...                              .....+.++.|..| +.+++.|..        
T Consensus       754 vlD~nTf~vl~~hef~~~------------------------------E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~e  803 (1096)
T KOG1897|consen  754 VLDQNTFEVLSSHEFERN------------------------------ETALSIISCKFTDDPNTYYVVGTGLVYPDENE  803 (1096)
T ss_pred             EecCCceeEEeecccccc------------------------------ceeeeeeeeeecCCCceEEEEEEEeeccCCCC
Confidence            444333332221110000                              01123444556666 667776642        


Q ss_pred             --CCeEEEEeCCCCceeeeeccc--CCCeeEeeecCCceEEEeeCCCcEEEeecCCCCceeeeecccccceEEEEecCCc
Q psy12697        501 --DKTTIIWDAASGQCEQQFSFH--SAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEGHTTGQLVHSYKGTGG  576 (602)
Q Consensus       501 --dg~i~iwd~~~~~~~~~~~~~--~~~v~~~~~s~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~  576 (602)
                        .|.|.++.+..+..++....+  .+.+.++..-. |+++ ++-...|++|+..+++.++.-..+.           .+
T Consensus       804 p~~GRIivfe~~e~~~L~~v~e~~v~Gav~aL~~fn-gkll-A~In~~vrLye~t~~~eLr~e~~~~-----------~~  870 (1096)
T KOG1897|consen  804 PVNGRIIVFEFEELNSLELVAETVVKGAVYALVEFN-GKLL-AGINQSVRLYEWTTERELRIECNIS-----------NP  870 (1096)
T ss_pred             cccceEEEEEEecCCceeeeeeeeeccceeehhhhC-CeEE-EecCcEEEEEEccccceehhhhccc-----------CC
Confidence              488889988774444333222  34455554333 3332 3455689999988876554433333           33


Q ss_pred             EEEEEECCCCCeEEEeccCCe
Q psy12697        577 IFEVCWNSRGDKVGASASDGS  597 (602)
Q Consensus       577 i~~l~~spdg~~l~~~~~dg~  597 (602)
                      +..+...-.|..+++|.--++
T Consensus       871 ~~aL~l~v~gdeI~VgDlm~S  891 (1096)
T KOG1897|consen  871 IIALDLQVKGDEIAVGDLMRS  891 (1096)
T ss_pred             eEEEEEEecCcEEEEeeccce
Confidence            444444445555555544443

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=97.65  E-value=0.023  Score=52.69  Aligned_cols=143  Identities=10%  Similarity=0.027  Sum_probs=90.4

Q ss_pred             CceeEEeeCCCCCeEEEEeC-----------CCeEEEEcCCCcceeecccccCCeEEEEEccCCCEEEEEecC-CcEEEE
Q psy12697        281 KDVTSLDWNNNGSFLATGSY-----------DGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVD-KTTIIW  348 (602)
Q Consensus       281 ~~i~~~~~~~~~~~l~~~~~-----------dg~i~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-g~i~~w  348 (602)
                      ...+.....|+|.+.+....           -|.++.++..+.....+..+-..-+.|+||||++.|+.+... +.|.-|
T Consensus       111 ~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~  190 (307)
T COG3386         111 NRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRY  190 (307)
T ss_pred             CCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEE
Confidence            44567778888876655433           145666666566666666666677899999999888877654 777777


Q ss_pred             eCCC--Ccee-----EEeeeccCCeeeeeccCCCeEEEee-CCC-eEEEEEcCCCceeeEeccCCCCeEEEEEC-CCCCE
Q psy12697        349 DAAS--GQCE-----QQFSFHSAPALDVDWQSNTSFASCS-TDQ-HIHVCKLHSDKPVKSFEGHTNEVNAIKWD-PQGLL  418 (602)
Q Consensus       349 d~~~--~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~i~i~d~~~~~~~~~~~~~~~~i~~~~~~-~~~~~  418 (602)
                      ++..  +...     ..+.......-.++...++.+.++. .+| .|.+|+.. ++.+..+.-+...+++++|- |+.+.
T Consensus       191 ~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~~FgG~~~~~  269 (307)
T COG3386         191 DLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTNPAFGGPDLNT  269 (307)
T ss_pred             ecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCCCCCccceEeCCCcCE
Confidence            6652  2111     1111222334444555556665333 333 89999988 88888888776778888875 34455


Q ss_pred             EEEEEC
Q psy12697        419 LASCSD  424 (602)
Q Consensus       419 l~~~~~  424 (602)
                      |.+.+.
T Consensus       270 L~iTs~  275 (307)
T COG3386         270 LYITSA  275 (307)
T ss_pred             EEEEec
Confidence            555443

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=97.64  E-value=0.027  Score=53.61  Aligned_cols=218  Identities=14%  Similarity=0.128  Sum_probs=118.9

Q ss_pred             cEEEEeCCCCceeEEeeeccCC-eee---eeccC-----CCeEEEeeC---------C-CeEEEEEcCCC----ceeeEe
Q psy12697        344 TTIIWDAASGQCEQQFSFHSAP-ALD---VDWQS-----NTSFASCST---------D-QHIHVCKLHSD----KPVKSF  400 (602)
Q Consensus       344 ~i~~wd~~~~~~~~~~~~~~~~-~~~---~~~~~-----~~~~~~~~~---------~-~~i~i~d~~~~----~~~~~~  400 (602)
                      .|++.|..+.+.+..+...... +.+   +.+..     ...+++|+.         . |.|.++++...    ..+..+
T Consensus         3 ~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i   82 (321)
T PF03178_consen    3 SIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLI   82 (321)
T ss_dssp             EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEE
T ss_pred             EEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEE
Confidence            5788888888777766654432 222   22332     334555543         2 88999999884    122221


Q ss_pred             --ccCCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCe-eeEeeccccccEEEEEECCCCCCCCCCCcceeeeeeeccC
Q psy12697        401 --EGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDN-CVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLG  477 (602)
Q Consensus       401 --~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  477 (602)
                        ....++|++++-- +++ |+++. .+.|.+|++...+ ....           ++..                     
T Consensus        83 ~~~~~~g~V~ai~~~-~~~-lv~~~-g~~l~v~~l~~~~~l~~~-----------~~~~---------------------  127 (321)
T PF03178_consen   83 HSTEVKGPVTAICSF-NGR-LVVAV-GNKLYVYDLDNSKTLLKK-----------AFYD---------------------  127 (321)
T ss_dssp             EEEEESS-EEEEEEE-TTE-EEEEE-TTEEEEEEEETTSSEEEE-----------EEE----------------------
T ss_pred             EEEeecCcceEhhhh-CCE-EEEee-cCEEEEEEccCcccchhh-----------heec---------------------
Confidence              2346788888866 444 54444 3789999998766 2211           1110                     


Q ss_pred             CccCCeEEEEEccCCCEEEEEeCCCeEEEEeCCC-Cceeeeecc--cCCCeeEeeecCCc-eEEEeeCCCcEEEeecCCC
Q psy12697        478 QHKGPIFALKWNKRGNYILSAGVDKTTIIWDAAS-GQCEQQFSF--HSAPALDVDWQSNT-SFASCSTDQHIHVCKLHSD  553 (602)
Q Consensus       478 ~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~--~~~~v~~~~~s~~~-~l~~~~~d~~i~iw~~~~~  553 (602)
                       ....+.++..  .+++++.|+....+.++.... ...+..+..  ....++++.|-+++ .++.+..+|.+.++.....
T Consensus       128 -~~~~i~sl~~--~~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~  204 (321)
T PF03178_consen  128 -SPFYITSLSV--FKNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPE  204 (321)
T ss_dssp             -BSSSEEEEEE--ETTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS
T ss_pred             -ceEEEEEEec--cccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCC
Confidence             1112333333  356899998888888775432 222222222  23458888888777 9999999999999987532


Q ss_pred             CceeeeecccccceEEEEecCCcEEEE---EECCC--CC------eEEEeccCCeEEe
Q psy12697        554 KPVKSFEGHTTGQLVHSYKGTGGIFEV---CWNSR--GD------KVGASASDGSVFK  600 (602)
Q Consensus       554 ~~~~~~~~~~~~~~~~~~~~~~~i~~l---~~spd--g~------~l~~~~~dg~v~i  600 (602)
                      ... ...+...-.....+.....|+++   ++.|.  +.      .++.++.+|.|.+
T Consensus       205 ~~~-~~~~~~~L~~~~~f~lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~  261 (321)
T PF03178_consen  205 IPN-SRDGDPKLERISSFHLGDIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGV  261 (321)
T ss_dssp             -SS-TTTTTTBEEEEEEEE-SS-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EEE
T ss_pred             Ccc-cccccccceeEEEEECCCccceEEEEEeeecCCCCcccccceEEEEecCCEEEE
Confidence            100 00000011122334445677777   55662  22      4888888998763

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>PRK13616 lipoprotein LpqB; Provisional

Probab=97.61  E-value=0.0068  Score=61.85  Aligned_cols=185  Identities=16%  Similarity=0.161  Sum_probs=106.5

Q ss_pred             cceEEEEEcCCCCEEEEee------CCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEeeCCCCCeEE
Q psy12697        223 SEVFICAWNPVKDFLASGS------GDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFLA  296 (602)
Q Consensus       223 ~~v~~~~~~~~~~~l~s~~------~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~  296 (602)
                      ..+...+++|+|+.++...      .|..-.+|-...+.....     ..            .....+.-.|+|+|+.++
T Consensus       350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~-----lt------------~g~~~t~PsWspDG~~lw  412 (591)
T PRK13616        350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQ-----VL------------EGHSLTRPSWSLDADAVW  412 (591)
T ss_pred             cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCccee-----ee------------cCCCCCCceECCCCCceE
Confidence            4577889999998887765      244445554432221100     00            013377888999988777


Q ss_pred             EEeCC------------CeEEEEcCCCcceeecccccCCeEEEEEccCCCEEEEEecCCcEEE---EeCCCCceeE----
Q psy12697        297 TGSYD------------GYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTII---WDAASGQCEQ----  357 (602)
Q Consensus       297 ~~~~d------------g~i~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~---wd~~~~~~~~----  357 (602)
                      +....            +.+.+.++++.....  .....|..+.|||||..++... ++.|.+   -....|....    
T Consensus       413 ~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~--~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~  489 (591)
T PRK13616        413 VVVDGNTVVRVIRDPATGQLARTPVDASAVAS--RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPR  489 (591)
T ss_pred             EEecCcceEEEeccCCCceEEEEeccCchhhh--ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccE
Confidence            76432            233333433322221  3356799999999999988765 567776   4544554111    


Q ss_pred             Eeee-ccCCeeeeeccCCCeEEEeeCCCeEEEEEcCCCceeeEe-cc--CCCCeEEEEECCCCCEEEEEECCCeEE
Q psy12697        358 QFSF-HSAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSF-EG--HTNEVNAIKWDPQGLLLASCSDDMTLK  429 (602)
Q Consensus       358 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~-~~--~~~~i~~~~~~~~~~~l~~~~~dg~i~  429 (602)
                      .+.. ....+..+.|.+++.++++..++.-.+|.+.-.-..... ..  ....+..++-+++  .++....+|.+.
T Consensus       490 ~l~~~l~~~~~~l~W~~~~~L~V~~~~~~~~v~~v~vDG~~~~~~~~~n~~~~v~~vaa~~~--~iyv~~~~g~~~  563 (591)
T PRK13616        490 EVGPGLGDTAVSLDWRTGDSLVVGRSDPEHPVWYVNLDGSNSDALPSRNLSAPVVAVAASPS--TVYVTDARAVLQ  563 (591)
T ss_pred             EeecccCCccccceEecCCEEEEEecCCCCceEEEecCCccccccCCCCccCceEEEecCCc--eEEEEcCCceEE
Confidence            1222 223357899999999888877665555554322211112 22  2456777777763  455556666443

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=97.59  E-value=0.084  Score=51.42  Aligned_cols=246  Identities=13%  Similarity=0.103  Sum_probs=151.2

Q ss_pred             eeEEeeCCCCCeEEEEeCC-CeEEEEcCCCcceeeccccc-CCeEEEEEccCCCEEEEE-ecCCcEEEEeCCCCceeEEe
Q psy12697        283 VTSLDWNNNGSFLATGSYD-GYARIWTSDGSLKSTLGQHK-GPIFALKWNKRGNYILSA-GVDKTTIIWDAASGQCEQQF  359 (602)
Q Consensus       283 i~~~~~~~~~~~l~~~~~d-g~i~i~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~~~-~~dg~i~~wd~~~~~~~~~~  359 (602)
                      ...+...+++..+.+.... ..+...+...........-. ..-..+..++.++.+... ..++.|.+.|..+.+.....
T Consensus        33 ~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n~~~~~~~~g~~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~  112 (381)
T COG3391          33 PGGVAVNPDGTQVYVANSGSNDVSVIDATSNTVTQSLSVGGVYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSI  112 (381)
T ss_pred             CceeEEcCccCEEEEEeecCceeeecccccceeeeeccCCCccccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEe
Confidence            4556667777544443322 23444443311111111111 334567888888855544 44689999998887777766


Q ss_pred             eeccCCeeeeeccCCC-eEEEeeC---CCeEEEEEcCCCceeeEeccCCCCeEEEEECCCCCEEEEEE-CCCeEEEEeCC
Q psy12697        360 SFHSAPALDVDWQSNT-SFASCST---DQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCS-DDMTLKIWSLD  434 (602)
Q Consensus       360 ~~~~~~~~~~~~~~~~-~~~~~~~---~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~iwd~~  434 (602)
                      .... ....+++.+++ .+.++..   ++.+.+.|..+.+.+.....-..+ ..++++|+|+.+.... .++.|.+.|..
T Consensus       113 ~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~  190 (381)
T COG3391         113 PVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTS  190 (381)
T ss_pred             eecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCC
Confidence            5544 55566677665 4444433   689999999998888775543344 8999999999766665 68899999966


Q ss_pred             CCeeeEeeccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCC---CeEEEEeCCC
Q psy12697        435 KDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVD---KTTIIWDAAS  511 (602)
Q Consensus       435 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d---g~i~iwd~~~  511 (602)
                      ...... -.. ..                            ...-...-..+.++|+|+++......   +.+...|..+
T Consensus       191 ~~~v~~-~~~-~~----------------------------~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~  240 (381)
T COG3391         191 GNSVVR-GSV-GS----------------------------LVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTAT  240 (381)
T ss_pred             Ccceec-ccc-cc----------------------------ccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCC
Confidence            544332 100 00                            00011223457788888866655443   5899999998


Q ss_pred             Cceeee-ecccCCCeeEeeecCCc-eEEEe-eCCCcEEEeecCCCCceeeee
Q psy12697        512 GQCEQQ-FSFHSAPALDVDWQSNT-SFASC-STDQHIHVCKLHSDKPVKSFE  560 (602)
Q Consensus       512 ~~~~~~-~~~~~~~v~~~~~s~~~-~l~~~-~~d~~i~iw~~~~~~~~~~~~  560 (602)
                      +..... ..........+..+|+| .+.+. ...+.+.+-|..+........
T Consensus       241 ~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~  292 (381)
T COG3391         241 GNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGP  292 (381)
T ss_pred             ceEEEeccccccCCCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeec
Confidence            877665 22111145678999999 55544 445889999987766655543

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.56  E-value=0.1  Score=51.77  Aligned_cols=190  Identities=14%  Similarity=0.203  Sum_probs=104.0

Q ss_pred             eEEEEEcCCCCEEEEe-eCC----CcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEeeCCCCCeEEEEe
Q psy12697        225 VFICAWNPVKDFLASG-SGD----STARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFLATGS  299 (602)
Q Consensus       225 v~~~~~~~~~~~l~s~-~~d----g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  299 (602)
                      +....++|+++++|.+ +..    ..+++.|+.+++..     ......            .....+.|.++++.|+...
T Consensus       126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l-----~d~i~~------------~~~~~~~W~~d~~~~~y~~  188 (414)
T PF02897_consen  126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFL-----PDGIEN------------PKFSSVSWSDDGKGFFYTR  188 (414)
T ss_dssp             EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEE-----EEEEEE------------EESEEEEECTTSSEEEEEE
T ss_pred             eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCc-----CCcccc------------cccceEEEeCCCCEEEEEE
Confidence            4467899999988865 333    35999999987432     111111            1123499999988877665


Q ss_pred             CCC-----------eEEEEcCCCcc---eeecccccCC--eEEEEEccCCCEEEEEecC----CcEEEEeCCCC----ce
Q psy12697        300 YDG-----------YARIWTSDGSL---KSTLGQHKGP--IFALKWNKRGNYILSAGVD----KTTIIWDAASG----QC  355 (602)
Q Consensus       300 ~dg-----------~i~i~~~~~~~---~~~~~~~~~~--i~~~~~~~~~~~l~~~~~d----g~i~~wd~~~~----~~  355 (602)
                      .+.           .|+.|.+....   ...+......  ...+..++++++|+.....    ..+.+.|+..+    ..
T Consensus       189 ~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~  268 (414)
T PF02897_consen  189 FDEDQRTSDSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAK  268 (414)
T ss_dssp             CSTTTSS-CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-S
T ss_pred             eCcccccccCCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCC
Confidence            432           36777765332   2233333322  6788899999998754332    34777788764    22


Q ss_pred             eEEeeeccCCe-eeeeccCCCeEEEee----CCCeEEEEEcCCCce---eeEeccCCCC--eEEEEECCCCCEEE-EEEC
Q psy12697        356 EQQFSFHSAPA-LDVDWQSNTSFASCS----TDQHIHVCKLHSDKP---VKSFEGHTNE--VNAIKWDPQGLLLA-SCSD  424 (602)
Q Consensus       356 ~~~~~~~~~~~-~~~~~~~~~~~~~~~----~~~~i~i~d~~~~~~---~~~~~~~~~~--i~~~~~~~~~~~l~-~~~~  424 (602)
                      ...+......+ ..+... ++.+..-+    .++.|...++.....   ...+..+...  +..+..  .+.+|+ ....
T Consensus       269 ~~~l~~~~~~~~~~v~~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~--~~~~Lvl~~~~  345 (414)
T PF02897_consen  269 PKLLSPREDGVEYYVDHH-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSL--FKDYLVLSYRE  345 (414)
T ss_dssp             EEEEEESSSS-EEEEEEE-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEE--ETTEEEEEEEE
T ss_pred             cEEEeCCCCceEEEEEcc-CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEE--ECCEEEEEEEE
Confidence            33333333333 333333 44433332    235677778777653   2245555553  444444  344444 4444


Q ss_pred             CC--eEEEEeCC
Q psy12697        425 DM--TLKIWSLD  434 (602)
Q Consensus       425 dg--~i~iwd~~  434 (602)
                      ++  .|+++++.
T Consensus       346 ~~~~~l~v~~~~  357 (414)
T PF02897_consen  346 NGSSRLRVYDLD  357 (414)
T ss_dssp             TTEEEEEEEETT
T ss_pred             CCccEEEEEECC
Confidence            44  58888888

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>KOG4640|consensus

Probab=97.54  E-value=0.00041  Score=67.21  Aligned_cols=78  Identities=14%  Similarity=0.152  Sum_probs=68.7

Q ss_pred             cCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeeecccCCCee-EeeecCCc-eEEEeeCCCcEEEeecCCCCcee
Q psy12697        480 KGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPAL-DVDWQSNT-SFASCSTDQHIHVCKLHSDKPVK  557 (602)
Q Consensus       480 ~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~-~~~~s~~~-~l~~~~~d~~i~iw~~~~~~~~~  557 (602)
                      ...+..+.|+|.-.++|.+..+|.|.+..+. .+.+.++..|...++ +++|.||| .||+|-.||+|++-|++++..+.
T Consensus        20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~   98 (665)
T KOG4640|consen   20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLV   98 (665)
T ss_pred             ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCcee
Confidence            3456778888888999999999999999988 888888888888888 99999999 99999999999999998887665


Q ss_pred             e
Q psy12697        558 S  558 (602)
Q Consensus       558 ~  558 (602)
                      .
T Consensus        99 ~   99 (665)
T KOG4640|consen   99 S   99 (665)
T ss_pred             c
Confidence            5

>KOG4640|consensus

Probab=97.53  E-value=0.00046  Score=66.88  Aligned_cols=92  Identities=18%  Similarity=0.237  Sum_probs=77.4

Q ss_pred             CceeEEeeCCCCCeEEEEeCCCeEEEEcCCCcceeecccccCCeE-EEEEccCCCEEEEEecCCcEEEEeCCCCceeEEe
Q psy12697        281 KDVTSLDWNNNGSFLATGSYDGYARIWTSDGSLKSTLGQHKGPIF-ALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQF  359 (602)
Q Consensus       281 ~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~  359 (602)
                      ..+.-+.|+|.-.++|.+..+|.+.+..++-..+.++.-+...++ +++|.|||+.|+.|-.||+|++.|++++..+...
T Consensus        21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~~~  100 (665)
T KOG4640|consen   21 INIKRIEWNPKMDLIATRTEKGELLIHRLNWQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLVSF  100 (665)
T ss_pred             cceEEEEEcCccchhheeccCCcEEEEEeccceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCceecc
Confidence            568889999999999999999999999988777778887777777 9999999999999999999999999999877664


Q ss_pred             ee-ccCCeeeeecc
Q psy12697        360 SF-HSAPALDVDWQ  372 (602)
Q Consensus       360 ~~-~~~~~~~~~~~  372 (602)
                      .. ....+.++.|.
T Consensus       101 ~~s~e~~is~~~w~  114 (665)
T KOG4640|consen  101 LFSVETDISKGIWD  114 (665)
T ss_pred             ccccccchheeecc
Confidence            22 33456666664

>PRK13616 lipoprotein LpqB; Provisional

Probab=97.52  E-value=0.018  Score=58.77  Aligned_cols=195  Identities=12%  Similarity=0.132  Sum_probs=103.0

Q ss_pred             CeeeeeccCCCeEEEeeC-------C--CeEEEEEcCCCceeeEeccCCCCeEEEEECCCCCEEEEEECCC-eEEEEeCC
Q psy12697        365 PALDVDWQSNTSFASCST-------D--QHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDM-TLKIWSLD  434 (602)
Q Consensus       365 ~~~~~~~~~~~~~~~~~~-------~--~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg-~i~iwd~~  434 (602)
                      .+.....++++..++...       +  ..|.+++.. +.......+  ...+.-.|+|+|+.|++..... .+++.+-.
T Consensus       351 ~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~~~lt~g--~~~t~PsWspDG~~lw~v~dg~~~~~v~~~~  427 (591)
T PRK13616        351 NITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVAVQVLEG--HSLTRPSWSLDADAVWVVVDGNTVVRVIRDP  427 (591)
T ss_pred             CcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC-CcceeeecC--CCCCCceECCCCCceEEEecCcceEEEeccC
Confidence            456777788765433322       3  356666642 222222222  2377889999999888886542 23333322


Q ss_pred             CCeeeEeeccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCCCeEEE---EeCCC
Q psy12697        435 KDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTII---WDAAS  511 (602)
Q Consensus       435 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~i---wd~~~  511 (602)
                      ....+..+........                         . ...+.|..+.|||||+.++... +|.|++   -....
T Consensus       428 ~~gql~~~~vd~ge~~-------------------------~-~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~  480 (591)
T PRK13616        428 ATGQLARTPVDASAVA-------------------------S-RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTED  480 (591)
T ss_pred             CCceEEEEeccCchhh-------------------------h-ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCC
Confidence            1111211111000000                         0 1345688899999999888765 477777   44444


Q ss_pred             Cce-e---eeec-ccCCCeeEeeecCCceEEEeeCCCcEEEeecCCCCceeee-ecccccceEEEEecCCcEEEEEECCC
Q psy12697        512 GQC-E---QQFS-FHSAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSF-EGHTTGQLVHSYKGTGGIFEVCWNSR  585 (602)
Q Consensus       512 ~~~-~---~~~~-~~~~~v~~~~~s~~~~l~~~~~d~~i~iw~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~l~~spd  585 (602)
                      |.. +   ..+. .-...+.++.|.+++.|+++..++...+|.+.-.-..... ....         ...++..++=+++
T Consensus       481 G~~~l~~~~~l~~~l~~~~~~l~W~~~~~L~V~~~~~~~~v~~v~vDG~~~~~~~~~n---------~~~~v~~vaa~~~  551 (591)
T PRK13616        481 GQYALTNPREVGPGLGDTAVSLDWRTGDSLVVGRSDPEHPVWYVNLDGSNSDALPSRN---------LSAPVVAVAASPS  551 (591)
T ss_pred             CceeecccEEeecccCCccccceEecCCEEEEEecCCCCceEEEecCCccccccCCCC---------ccCceEEEecCCc
Confidence            541 1   1122 2233468899999995556666555556655321111111 1100         1355777777763


Q ss_pred             CCeEEEeccCCeEEe
Q psy12697        586 GDKVGASASDGSVFK  600 (602)
Q Consensus       586 g~~l~~~~~dg~v~i  600 (602)
                        .|+++..+|.+.+
T Consensus       552 --~iyv~~~~g~~~l  564 (591)
T PRK13616        552 --TVYVTDARAVLQL  564 (591)
T ss_pred             --eEEEEcCCceEEe
Confidence              5667788886654

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=97.51  E-value=0.085  Score=51.36  Aligned_cols=218  Identities=13%  Similarity=0.096  Sum_probs=142.8

Q ss_pred             eeEEeeCCCCCeEEE-EeCCCeEEEEcCCCcceeecccccCCeEEEEEccCCCEEEEEec---CCcEEEEeCCCCceeEE
Q psy12697        283 VTSLDWNNNGSFLAT-GSYDGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGV---DKTTIIWDAASGQCEQQ  358 (602)
Q Consensus       283 i~~~~~~~~~~~l~~-~~~dg~i~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---dg~i~~wd~~~~~~~~~  358 (602)
                      -..++.++.+..+.+ ...++.|.+.|...........-......+.++++++.+..+..   ++++.+.|..+++....
T Consensus        76 p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~  155 (381)
T COG3391          76 PAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTAT  155 (381)
T ss_pred             ccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeeccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEE
Confidence            456778888875444 44558899999654333333222336678999999988887765   68999999999988888


Q ss_pred             eeeccCCeeeeeccCCCe-EE-EeeCCCeEEEEEcCCCceee-E---eccCCCCeEEEEECCCCCEEEEEECC---CeEE
Q psy12697        359 FSFHSAPALDVDWQSNTS-FA-SCSTDQHIHVCKLHSDKPVK-S---FEGHTNEVNAIKWDPQGLLLASCSDD---MTLK  429 (602)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~-~~-~~~~~~~i~i~d~~~~~~~~-~---~~~~~~~i~~~~~~~~~~~l~~~~~d---g~i~  429 (602)
                      ......+ ..+++.|++. ++ +-..++.|.+.|........ .   ...-......+.++|+|..+.+....   +.+.
T Consensus       156 ~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~  234 (381)
T COG3391         156 IPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVL  234 (381)
T ss_pred             EecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEE
Confidence            5544444 8888888866 33 33468999999977665543 1   11122345678999999976665544   5888


Q ss_pred             EEeCCCCeeeEeeccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeC-CCeEEEEe
Q psy12697        430 IWSLDKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGV-DKTTIIWD  508 (602)
Q Consensus       430 iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~-dg~i~iwd  508 (602)
                      ..|..++..........                                .. ....+.++|+|+++.+... .+.+.+-|
T Consensus       235 ~id~~~~~v~~~~~~~~--------------------------------~~-~~~~v~~~p~g~~~yv~~~~~~~V~vid  281 (381)
T COG3391         235 KIDTATGNVTATDLPVG--------------------------------SG-APRGVAVDPAGKAAYVANSQGGTVSVID  281 (381)
T ss_pred             EEeCCCceEEEeccccc--------------------------------cC-CCCceeECCCCCEEEEEecCCCeEEEEe
Confidence            88887765544311100                                01 2345677788888887744 48899999


Q ss_pred             CCCCceeeeecccCC---CeeEeeecCCc
Q psy12697        509 AASGQCEQQFSFHSA---PALDVDWQSNT  534 (602)
Q Consensus       509 ~~~~~~~~~~~~~~~---~v~~~~~s~~~  534 (602)
                      ..+............   .+..+++.+..
T Consensus       282 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  310 (381)
T COG3391         282 GATDRVVKTGPTGNEALGEPVSIAISPLY  310 (381)
T ss_pred             CCCCceeeeecccccccccceeccceeec
Confidence            888777766554332   35555555543

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=97.51  E-value=0.078  Score=48.92  Aligned_cols=262  Identities=12%  Similarity=0.119  Sum_probs=118.9

Q ss_pred             CCCceeEEeeCCCCCeEEEEeCCCeEEEEcCC-Ccceeeccc--c---cCCeEEEEEccCCCEEEEEecCCcEEEEeCCC
Q psy12697        279 SNKDVTSLDWNNNGSFLATGSYDGYARIWTSD-GSLKSTLGQ--H---KGPIFALKWNKRGNYILSAGVDKTTIIWDAAS  352 (602)
Q Consensus       279 ~~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~-~~~~~~~~~--~---~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~  352 (602)
                      ....+..|.|..+..-+++|.. +.|.- ..+ |+.-.....  .   .-...++.|..+ +.++ ++..+ +.+.....
T Consensus        15 t~~~l~dV~F~d~~~G~~VG~~-g~il~-T~DGG~tW~~~~~~~~~~~~~~l~~I~f~~~-~g~i-vG~~g-~ll~T~Dg   89 (302)
T PF14870_consen   15 TDKPLLDVAFVDPNHGWAVGAY-GTILK-TTDGGKTWQPVSLDLDNPFDYHLNSISFDGN-EGWI-VGEPG-LLLHTTDG   89 (302)
T ss_dssp             -SS-EEEEEESSSS-EEEEETT-TEEEE-ESSTTSS-EE-----S-----EEEEEEEETT-EEEE-EEETT-EEEEESST
T ss_pred             CCCceEEEEEecCCEEEEEecC-CEEEE-ECCCCccccccccCCCccceeeEEEEEecCC-ceEE-EcCCc-eEEEecCC
Confidence            3567899999966666776654 54322 222 222111111  1   123667777643 3344 44455 33433344


Q ss_pred             CceeEEeee---ccCCeeeeeccCCCeEEEeeCCCeEEEEEcCCCce-eeEeccCCCCeEEEEECCCCCEEEEEECCCeE
Q psy12697        353 GQCEQQFSF---HSAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKP-VKSFEGHTNEVNAIKWDPQGLLLASCSDDMTL  428 (602)
Q Consensus       353 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~-~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i  428 (602)
                      |+.=..+..   .......+....++.....+..|.|+.-. ..++. ......-.+.+..+..+++|++++++..-...
T Consensus        90 G~tW~~v~l~~~lpgs~~~i~~l~~~~~~l~~~~G~iy~T~-DgG~tW~~~~~~~~gs~~~~~r~~dG~~vavs~~G~~~  168 (302)
T PF14870_consen   90 GKTWERVPLSSKLPGSPFGITALGDGSAELAGDRGAIYRTT-DGGKTWQAVVSETSGSINDITRSSDGRYVAVSSRGNFY  168 (302)
T ss_dssp             TSS-EE----TT-SS-EEEEEEEETTEEEEEETT--EEEES-STTSSEEEEE-S----EEEEEE-TTS-EEEEETTSSEE
T ss_pred             CCCcEEeecCCCCCCCeeEEEEcCCCcEEEEcCCCcEEEeC-CCCCCeeEcccCCcceeEeEEECCCCcEEEEECcccEE
Confidence            443333221   11222333333444444445555544322 22222 22233445678889999999999888766666


Q ss_pred             EEEeCCCCeeeEeeccccccEEEEEECCCCCCCCCCCcceeeeee------------eccCCccCCeEEEEEccCCCEEE
Q psy12697        429 KIWSLDKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILK------------STLGQHKGPIFALKWNKRGNYIL  496 (602)
Q Consensus       429 ~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~v~~i~~s~~~~~l~  496 (602)
                      .-||--...-...-+.....+..+.|.|++..........+..-.            .........+..++|.+++...+
T Consensus       169 ~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~~Gg~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa  248 (302)
T PF14870_consen  169 SSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLARGGQIQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRPPNEIWA  248 (302)
T ss_dssp             EEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEETTTEEEEEE-TTEEEEE---B-TTSS--S-EEEEEESSSS-EEE
T ss_pred             EEecCCCccceEEccCccceehhceecCCCCEEEEeCCcEEEEccCCCCccccccccCCcccCceeeEEEEecCCCCEEE
Confidence            678754322222223356789999999997653333333322221            11222344588999999988877


Q ss_pred             EEeCCCeEEEEeCCCCceeeeec---ccCCCeeEeeecCCceEEEeeCCCcEEEe
Q psy12697        497 SAGVDKTTIIWDAASGQCEQQFS---FHSAPALDVDWQSNTSFASCSTDQHIHVC  548 (602)
Q Consensus       497 s~~~dg~i~iwd~~~~~~~~~~~---~~~~~v~~~~~s~~~~l~~~~~d~~i~iw  548 (602)
                      +|+. |.+ +...+.|+.=+.-+   .-...++.+.|.++..-++.+.+|.+--|
T Consensus       249 ~gg~-G~l-~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~lG~~G~ll~~  301 (302)
T PF14870_consen  249 VGGS-GTL-LVSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFVLGQDGVLLRY  301 (302)
T ss_dssp             EEST-T-E-EEESSTTSS-EE-GGGTTSSS---EEEEEETTEEEEE-STTEEEEE
T ss_pred             EeCC-ccE-EEeCCCCccceECccccCCCCceEEEEEcCCCceEEECCCcEEEEe
Confidence            6654 433 33444454333322   23445788888766655666778876554

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=97.50  E-value=0.0033  Score=65.06  Aligned_cols=139  Identities=11%  Similarity=0.058  Sum_probs=90.5

Q ss_pred             CCCeEEEEeCCCCeeeEeeccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCCCe
Q psy12697        424 DDMTLKIWSLDKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKT  503 (602)
Q Consensus       424 ~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~  503 (602)
                      ....|+-.|+..|+.+.....+... .-..+.|+.+...                         .  ....-+.|-.+..
T Consensus       502 ~~~~ly~mDLe~GKVV~eW~~~~~~-~v~~~~p~~K~aq-------------------------l--t~e~tflGls~n~  553 (794)
T PF08553_consen  502 NPNKLYKMDLERGKVVEEWKVHDDI-PVVDIAPDSKFAQ-------------------------L--TNEQTFLGLSDNS  553 (794)
T ss_pred             CCCceEEEecCCCcEEEEeecCCCc-ceeEecccccccc-------------------------c--CCCceEEEECCCc
Confidence            4577999999999999988876543 1233334322110                         0  1123556667788


Q ss_pred             EEEEeCCCCc--eee-ee--cccCCCeeEeeecCCceEEEeeCCCcEEEeecCCCCceeeeecccccceEEEEecCCcEE
Q psy12697        504 TIIWDAASGQ--CEQ-QF--SFHSAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEGHTTGQLVHSYKGTGGIF  578 (602)
Q Consensus       504 i~iwd~~~~~--~~~-~~--~~~~~~v~~~~~s~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  578 (602)
                      +..||.+-..  ++. ..  ........|++-+.+|+||+|+.+|.||+||--..+....+++.           ..+|.
T Consensus       554 lfriDpR~~~~k~v~~~~k~Y~~~~~Fs~~aTt~~G~iavgs~~G~IRLyd~~g~~AKT~lp~l-----------G~pI~  622 (794)
T PF08553_consen  554 LFRIDPRLSGNKLVDSQSKQYSSKNNFSCFATTEDGYIAVGSNKGDIRLYDRLGKRAKTALPGL-----------GDPII  622 (794)
T ss_pred             eEEeccCCCCCceeeccccccccCCCceEEEecCCceEEEEeCCCcEEeecccchhhhhcCCCC-----------CCCee
Confidence            9999987532  221 11  11344578888899999999999999999993221111112221           48899


Q ss_pred             EEEECCCCCeEEEeccCCeEEee
Q psy12697        579 EVCWNSRGDKVGASASDGSVFKN  601 (602)
Q Consensus       579 ~l~~spdg~~l~~~~~dg~v~i~  601 (602)
                      +|..+.||++|++.+..-.+.|.
T Consensus       623 ~iDvt~DGkwilaTc~tyLlLi~  645 (794)
T PF08553_consen  623 GIDVTADGKWILATCKTYLLLID  645 (794)
T ss_pred             EEEecCCCcEEEEeecceEEEEE
Confidence            99999999999888776655543

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>smart00320 WD40 WD40 repeats

Probab=97.50  E-value=0.00036  Score=41.65  Aligned_cols=38  Identities=42%  Similarity=0.803  Sum_probs=33.6

Q ss_pred             ceeeEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEe
Q psy12697        395 KPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWS  432 (602)
Q Consensus       395 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd  432 (602)
                      ++...+..|...|.++.|++++.++++++.|+.+++|+
T Consensus         3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            44566777888999999999999999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=97.49  E-value=0.004  Score=64.46  Aligned_cols=139  Identities=13%  Similarity=0.111  Sum_probs=93.6

Q ss_pred             eCCCeEEEEEcCCCceeeEeccCCCC-eEEEEECC-----CCCEEEEEECCCeEEEEeCCCCe-eeEeeccccccEEEEE
Q psy12697        381 STDQHIHVCKLHSDKPVKSFEGHTNE-VNAIKWDP-----QGLLLASCSDDMTLKIWSLDKDN-CVHDLQAHNKEIYTIK  453 (602)
Q Consensus       381 ~~~~~i~i~d~~~~~~~~~~~~~~~~-i~~~~~~~-----~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~i~~~~  453 (602)
                      .....|+-.|+..|+.+..+..|... |..++-..     ....-+.|-.+..+..||.+-.. .+..-+.+.       
T Consensus       501 ~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~-------  573 (794)
T PF08553_consen  501 NNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQ-------  573 (794)
T ss_pred             CCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccc-------
Confidence            34678999999999999999988754 55544221     12345667778889999988432 111111100       


Q ss_pred             ECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeeecccCCCeeEeeecCC
Q psy12697        454 WSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSN  533 (602)
Q Consensus       454 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~  533 (602)
                                             ........|++-+.+| +||.|+.+|.|++||--..+....+.+-..||..+..+.|
T Consensus       574 -----------------------Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~D  629 (794)
T PF08553_consen  574 -----------------------YSSKNNFSCFATTEDG-YIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTAD  629 (794)
T ss_pred             -----------------------cccCCCceEEEecCCc-eEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCC
Confidence                                   0123345566666665 5899999999999995433334456667889999999999


Q ss_pred             ceEEEeeCCCcEEEeec
Q psy12697        534 TSFASCSTDQHIHVCKL  550 (602)
Q Consensus       534 ~~l~~~~~d~~i~iw~~  550 (602)
                      |..+.+..+..+.+++.
T Consensus       630 GkwilaTc~tyLlLi~t  646 (794)
T PF08553_consen  630 GKWILATCKTYLLLIDT  646 (794)
T ss_pred             CcEEEEeecceEEEEEE
Confidence            95555566677888876

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>KOG2079|consensus

Probab=97.48  E-value=0.0013  Score=68.05  Aligned_cols=95  Identities=20%  Similarity=0.302  Sum_probs=74.3

Q ss_pred             CCCeEEEEeCCCeEEEEcCCCcce--eecccccCCeEEEEEccCCCEEEEEecCCcEEEEeCCCCceeEEeeeccCCeee
Q psy12697        291 NGSFLATGSYDGYARIWTSDGSLK--STLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALD  368 (602)
Q Consensus       291 ~~~~l~~~~~dg~i~i~~~~~~~~--~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~  368 (602)
                      .+..++.|+..|.+...|..+.+.  ..-..-.++|++++|+.+|..++.|-.+|.|.+||+..++..+.+..+..+...
T Consensus        98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~  177 (1206)
T KOG2079|consen   98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTG  177 (1206)
T ss_pred             eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccce
Confidence            345789999999999999887644  233345679999999999999999999999999999999999988877766554


Q ss_pred             ee---ccC-CCeEEEeeCCCe
Q psy12697        369 VD---WQS-NTSFASCSTDQH  385 (602)
Q Consensus       369 ~~---~~~-~~~~~~~~~~~~  385 (602)
                      +-   +.. +..++++...|.
T Consensus       178 vi~v~~t~~nS~llt~D~~Gs  198 (1206)
T KOG2079|consen  178 VIFVGRTSQNSKLLTSDTGGS  198 (1206)
T ss_pred             EEEEEEeCCCcEEEEccCCCc
Confidence            43   333 344777777776

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=97.47  E-value=0.017  Score=43.30  Aligned_cols=100  Identities=13%  Similarity=0.137  Sum_probs=67.8

Q ss_pred             eEEEEEcc---CC-CEEEEEecCCcEEEEeCCCCceeEEeeeccCCeeeeeccCCCeEEEeeCCCeEEEEEcCCCceeeE
Q psy12697        324 IFALKWNK---RG-NYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKS  399 (602)
Q Consensus       324 i~~~~~~~---~~-~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~  399 (602)
                      |+++++..   +| +.|++|+.|..|++|+-.  +.+..+. ....+..+.....+.|+.+..+|+|-+|+-..  .+..
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~-e~~~v~~L~~~~~~~F~Y~l~NGTVGvY~~~~--RlWR   76 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEIT-ETDKVTSLCSLGGGRFAYALANGTVGVYDRSQ--RLWR   76 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEEe-cccceEEEEEcCCCEEEEEecCCEEEEEeCcc--eeee
Confidence            56666654   22 579999999999999744  3444443 44567777777789999999999999997633  2333


Q ss_pred             eccCCCCeEEEEE-CCCC---CEEEEEECCCeEE
Q psy12697        400 FEGHTNEVNAIKW-DPQG---LLLASCSDDMTLK  429 (602)
Q Consensus       400 ~~~~~~~i~~~~~-~~~~---~~l~~~~~dg~i~  429 (602)
                      .+.... +.++.+ +.++   .-|++|-.+|.|-
T Consensus        77 iKSK~~-~~~~~~~D~~gdG~~eLI~GwsnGkve  109 (111)
T PF14783_consen   77 IKSKNQ-VTSMAFYDINGDGVPELIVGWSNGKVE  109 (111)
T ss_pred             eccCCC-eEEEEEEcCCCCCceEEEEEecCCeEE
Confidence            333333 555544 3333   3688998899874

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=97.46  E-value=0.044  Score=52.14  Aligned_cols=183  Identities=14%  Similarity=0.166  Sum_probs=101.6

Q ss_pred             CCEEEEeeC----------CCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEeeCCCCCeEEEEeCCCe
Q psy12697        234 KDFLASGSG----------DSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFLATGSYDGY  303 (602)
Q Consensus       234 ~~~l~s~~~----------dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~  303 (602)
                      ..+++.|+.          .|.|.++++.... .....+......         ...++|++++-- ++ .++++ .++.
T Consensus        42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~-~~~~~l~~i~~~---------~~~g~V~ai~~~-~~-~lv~~-~g~~  108 (321)
T PF03178_consen   42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESP-ENNFKLKLIHST---------EVKGPVTAICSF-NG-RLVVA-VGNK  108 (321)
T ss_dssp             SEEEEEEEEE--TTSSS-S-EEEEEEEECSS------EEEEEEEE---------EESS-EEEEEEE-TT-EEEEE-ETTE
T ss_pred             cCEEEEEecccccccccccCcEEEEEEEEccc-ccceEEEEEEEE---------eecCcceEhhhh-CC-EEEEe-ecCE
Confidence            456776653          2889999998751 101112222111         124778888766 33 34444 3488


Q ss_pred             EEEEcCCCcc-eeecccccC--CeEEEEEccCCCEEEEEecCCcEEEEeCCC-CceeEEee--eccCCeeeeecc-CCCe
Q psy12697        304 ARIWTSDGSL-KSTLGQHKG--PIFALKWNKRGNYILSAGVDKTTIIWDAAS-GQCEQQFS--FHSAPALDVDWQ-SNTS  376 (602)
Q Consensus       304 i~i~~~~~~~-~~~~~~~~~--~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~-~~~~~~~~--~~~~~~~~~~~~-~~~~  376 (602)
                      |.+|++.... ......+..  .+.++...  +++++.|+....+.++.... ...+..+.  .....+.++.+. .+..
T Consensus       109 l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~  186 (321)
T PF03178_consen  109 LYVYDLDNSKTLLKKAFYDSPFYITSLSVF--KNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDT  186 (321)
T ss_dssp             EEEEEEETTSSEEEEEEE-BSSSEEEEEEE--TTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSE
T ss_pred             EEEEEccCcccchhhheecceEEEEEEecc--ccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcE
Confidence            9999987555 444433333  45555544  66999999888888874443 22233332  234457777776 3358


Q ss_pred             EEEeeCCCeEEEEEcCC-------C--ceeeEeccC-CCCeEEE---EECCC--CC------EEEEEECCCeEEEE
Q psy12697        377 FASCSTDQHIHVCKLHS-------D--KPVKSFEGH-TNEVNAI---KWDPQ--GL------LLASCSDDMTLKIW  431 (602)
Q Consensus       377 ~~~~~~~~~i~i~d~~~-------~--~~~~~~~~~-~~~i~~~---~~~~~--~~------~l~~~~~dg~i~iw  431 (602)
                      ++++..+|.+.++....       +  +......-| ...|+++   ++.|.  +.      .++.++.+|.|...
T Consensus       187 ~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l  262 (321)
T PF03178_consen  187 IIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGVL  262 (321)
T ss_dssp             EEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred             EEEEcCCCeEEEEEECCCCcccccccccceeEEEEECCCccceEEEEEeeecCCCCcccccceEEEEecCCEEEEE
Confidence            99999999999988763       1  111111222 3457776   55552  22      47888889988744

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.42  E-value=0.082  Score=47.08  Aligned_cols=203  Identities=12%  Similarity=0.205  Sum_probs=123.8

Q ss_pred             cccCCeEEEEEccCCCEEEEEecCCcEEEEeCCCCceeEEeeecc-CCeeeeeccCCCeEEEeeC-CCeEEEEEcCCCce
Q psy12697        319 QHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHS-APALDVDWQSNTSFASCST-DQHIHVCKLHSDKP  396 (602)
Q Consensus       319 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~i~i~d~~~~~~  396 (602)
                      +-...+.++.|+|+.+.|++......-.++=...|+.+..+.... ...-.+.|..++.++.+.+ ++.++++.+.....
T Consensus        83 g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~  162 (316)
T COG3204          83 GETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADTT  162 (316)
T ss_pred             cccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCcc
Confidence            444559999999999999999988888888888899998876543 3455677888888877764 57788877665422


Q ss_pred             eeEe----------ccCCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeeeEeeccccccEEEEEECCCCCCCCCCCc
Q psy12697        397 VKSF----------EGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNM  466 (602)
Q Consensus       397 ~~~~----------~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  466 (602)
                      +...          ...+.....++|+|..+.|..+-+..-+.||.+..............        |..        
T Consensus       163 ~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~--------~~~--------  226 (316)
T COG3204         163 VISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLD--------PTA--------  226 (316)
T ss_pred             EEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccC--------ccc--------
Confidence            2111          11245678899999999998888877777777652211111000000        000        


Q ss_pred             ceeeeeeeccCCccCCeEEEEEcc-CCCEEEEEeCCCeEEEEeCCCCceeeeecccCC---------CeeEeeecCCceE
Q psy12697        467 SLIFILKSTLGQHKGPIFALKWNK-RGNYILSAGVDKTTIIWDAASGQCEQQFSFHSA---------PALDVDWQSNTSF  536 (602)
Q Consensus       467 ~~~~~~~~~~~~~~~~v~~i~~s~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~---------~v~~~~~s~~~~l  536 (602)
                              ...-.-..|.++.|.+ .+.+|+-+.+++.+.-.|.. |+.+..+..+.+         ..-.++..++|.|
T Consensus       227 --------~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~-G~~~~~lsL~~g~~gL~~dipqaEGiamDd~g~l  297 (316)
T COG3204         227 --------DRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLS-GEVIELLSLTKGNHGLSSDIPQAEGIAMDDDGNL  297 (316)
T ss_pred             --------ccceEeeccccceecCCCCcEEEEecCCceEEEEecC-CCeeeeEEeccCCCCCcccCCCcceeEECCCCCE
Confidence                    0000113355666765 55677777778878777765 554443332211         1334566666644


Q ss_pred             EEeeCCCcEE
Q psy12697        537 ASCSTDQHIH  546 (602)
Q Consensus       537 ~~~~~d~~i~  546 (602)
                      ...|.-+-.+
T Consensus       298 YIvSEPnlfy  307 (316)
T COG3204         298 YIVSEPNLFY  307 (316)
T ss_pred             EEEecCCcce
Confidence            4444444333

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=97.38  E-value=0.091  Score=46.72  Aligned_cols=185  Identities=11%  Similarity=0.092  Sum_probs=116.3

Q ss_pred             CeEEEEEccCCCEEEEEecCC--cEEEEeCCCCceeEEeeeccC-CeeeeeccCCCeEEEeeCCCeEEEEEcCCCceeeE
Q psy12697        323 PIFALKWNKRGNYILSAGVDK--TTIIWDAASGQCEQQFSFHSA-PALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKS  399 (602)
Q Consensus       323 ~i~~~~~~~~~~~l~~~~~dg--~i~~wd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~  399 (602)
                      ....+.|..++.++-+.+.-|  .|+.+|+.+++.......... ---.++...+..+...=.++...+||..+.+.+.+
T Consensus        46 FTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d~l~qLTWk~~~~f~yd~~tl~~~~~  125 (264)
T PF05096_consen   46 FTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGDKLYQLTWKEGTGFVYDPNTLKKIGT  125 (264)
T ss_dssp             EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETTEEEEEESSSSEEEEEETTTTEEEEE
T ss_pred             cCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEECCEEEEEEecCCeEEEEccccceEEEE
Confidence            355788877888778888766  788999999998877665443 22334444555666666789999999999988887


Q ss_pred             eccCCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeeeEeeccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCc
Q psy12697        400 FEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQH  479 (602)
Q Consensus       400 ~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  479 (602)
                      +.-. +.=..++  .+++.|+.......++.+|..+.+...++......                             ..
T Consensus       126 ~~y~-~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g-----------------------------~p  173 (264)
T PF05096_consen  126 FPYP-GEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNG-----------------------------RP  173 (264)
T ss_dssp             EE-S-SS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETT-----------------------------EE
T ss_pred             EecC-CcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECC-----------------------------EE
Confidence            7633 4445566  46777777777788999999887776665432110                             01


Q ss_pred             cCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeeecc---------------cCCCeeEeeecCCc-eEEEee
Q psy12697        480 KGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSF---------------HSAPALDVDWQSNT-SFASCS  540 (602)
Q Consensus       480 ~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~---------------~~~~v~~~~~s~~~-~l~~~~  540 (602)
                      -..++.+.+- +|...|=.-....|..-|..+|+.+..+..               ..+-.+.+++.|.. .+...|
T Consensus       174 v~~LNELE~i-~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG  249 (264)
T PF05096_consen  174 VSNLNELEYI-NGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG  249 (264)
T ss_dssp             ---EEEEEEE-TTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred             CCCcEeEEEE-cCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence            1223334443 566666666667788888888887765431               12457899998887 444433

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>KOG4499|consensus

Probab=97.23  E-value=0.11  Score=44.50  Aligned_cols=222  Identities=10%  Similarity=0.111  Sum_probs=114.6

Q ss_pred             CeEEEEeCCCeEEEEcCCCcceeecccccCCeEEEEEccCC---CEEEEEecCCcEEEEeCC--CCceeEEe---e--ec
Q psy12697        293 SFLATGSYDGYARIWTSDGSLKSTLGQHKGPIFALKWNKRG---NYILSAGVDKTTIIWDAA--SGQCEQQF---S--FH  362 (602)
Q Consensus       293 ~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~i~~~~~~~~~---~~l~~~~~dg~i~~wd~~--~~~~~~~~---~--~~  362 (602)
                      .++.+--..|.|.-||..........-...+..++.+--.+   .+.+.++..=.|.-||-.  .-....++   +  ..
T Consensus        28 sLl~VDi~ag~v~r~D~~qn~v~ra~ie~p~~ag~ilpv~~~~q~~~v~~G~kf~i~nwd~~~~~a~v~~t~~ev~~d~k  107 (310)
T KOG4499|consen   28 SLLYVDIEAGEVHRYDIEQNKVYRAKIEGPPSAGFILPVEGGPQEFAVGCGSKFVIVNWDGVSESAKVYRTLFEVQPDRK  107 (310)
T ss_pred             eEEEEEeccCceehhhhhhhheEEEEEecCcceeEEEEecCCCceEEEeecceEEEEEcccccceeeeeeeccccCchHH
Confidence            34555555677777887654444333222223333332222   222233332234446632  22222221   1  11


Q ss_pred             cCCeeeeeccCCCeEEEeeCC----------CeEEEEEcCCCceeeEeccCCCCeEEEEECCCCCEEEEE-ECCCeEEEE
Q psy12697        363 SAPALDVDWQSNTSFASCSTD----------QHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASC-SDDMTLKIW  431 (602)
Q Consensus       363 ~~~~~~~~~~~~~~~~~~~~~----------~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~iw  431 (602)
                      .....+...+|++++..|...          |.++.|-..  ..+..+...-.--+.++|+.+.+.+... +.+-.|.-|
T Consensus       108 knR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~--h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~  185 (310)
T KOG4499|consen  108 KNRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAG--HQVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDAY  185 (310)
T ss_pred             hcccccCccCCCCceeeeeeccccccccccccEEEEeccC--CCceeeehhccCCccccccccCcEEEEEccCceEEeee
Confidence            234455566788888766542          333333321  1122222222334568888877665544 456677778


Q ss_pred             e--CCCCeeeEeeccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCCCeEEEEeC
Q psy12697        432 S--LDKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDA  509 (602)
Q Consensus       432 d--~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~  509 (602)
                      |  ..++....     ...+..+.-+.                    ....-.--.+++.-+|++.++.-..++|...|.
T Consensus       186 dyd~~tG~~sn-----r~~i~dlrk~~--------------------~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp  240 (310)
T KOG4499|consen  186 DYDCPTGDLSN-----RKVIFDLRKSQ--------------------PFESLEPDGMTIDTEGNLYVATFNGGTVQKVDP  240 (310)
T ss_pred             ecCCCcccccC-----cceeEEeccCC--------------------CcCCCCCCcceEccCCcEEEEEecCcEEEEECC
Confidence            7  44443211     01111111100                    000001112444558888999999999999999


Q ss_pred             CCCceeeeecccCCCeeEeeecCCc---eEEEeeC
Q psy12697        510 ASGQCEQQFSFHSAPALDVDWQSNT---SFASCST  541 (602)
Q Consensus       510 ~~~~~~~~~~~~~~~v~~~~~s~~~---~l~~~~~  541 (602)
                      .+|+.+.++......++++||---.   +.+++..
T Consensus       241 ~tGK~L~eiklPt~qitsccFgGkn~d~~yvT~aa  275 (310)
T KOG4499|consen  241 TTGKILLEIKLPTPQITSCCFGGKNLDILYVTTAA  275 (310)
T ss_pred             CCCcEEEEEEcCCCceEEEEecCCCccEEEEEehh
Confidence            9999999999999999999996543   4444443

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=97.20  E-value=0.24  Score=47.89  Aligned_cols=103  Identities=13%  Similarity=0.119  Sum_probs=61.0

Q ss_pred             CCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeeeEeeccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCC
Q psy12697        403 HTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGP  482 (602)
Q Consensus       403 ~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  482 (602)
                      ....+.+++.+|++++.|+...=|+|.++|+.++..++..++..+.-  +.|-.-........     ........+...
T Consensus       306 ~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAq--c~wi~~~~~~~~~~-----~~~~~~~~~~~~  378 (415)
T PF14655_consen  306 SKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQ--CGWIEVPEEGDRDR-----SNSNSPKSSSRF  378 (415)
T ss_pred             CCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccce--EEEEEeeccccccc-----ccccccCCCCcc
Confidence            44568899999999998888777999999999998888887654432  22211000000000     000000000000


Q ss_pred             eEEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeeecc
Q psy12697        483 IFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSF  520 (602)
Q Consensus       483 v~~i~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~  520 (602)
                      ..        -+++-+-.-|.|.||++.+|..+..+..
T Consensus       379 ~l--------~LvIyaprRg~lEvW~~~~g~Rv~a~~v  408 (415)
T PF14655_consen  379 AL--------FLVIYAPRRGILEVWSMRQGPRVAAFNV  408 (415)
T ss_pred             eE--------EEEEEeccCCeEEEEecCCCCEEEEEEe
Confidence            00        1234566789999999999988876653

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.18  E-value=0.15  Score=45.54  Aligned_cols=178  Identities=17%  Similarity=0.176  Sum_probs=113.4

Q ss_pred             eeccCCceEEEEECCCCCeEEEeeCCceEEEEecCCceeEEEeeccCceEEEEeCCCCCCCCCCCCccccccccccCCcc
Q psy12697        136 LTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKGTGGIFEVCWNSRGTPPNPPESMEVDASIEIPQSKA  215 (602)
Q Consensus       136 l~~h~~~V~~~~~s~d~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  215 (602)
                      +.|-...|.++.|+|+.+.|.+......-.||=..+|+.+++++..+                                 
T Consensus        81 i~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g---------------------------------  127 (316)
T COG3204          81 ILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTG---------------------------------  127 (316)
T ss_pred             cccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccc---------------------------------
Confidence            44555669999999999999999888888888888899888765321                                 


Q ss_pred             eEeeCCCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEeeCCCCCeE
Q psy12697        216 TKLIGHESEVFICAWNPVKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFL  295 (602)
Q Consensus       216 ~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l  295 (602)
                            -...-.+.+..++.+.++--.++.+.++.++...........     .+.. +.....+...-.++|.|....|
T Consensus       128 ------~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~~~~~~~~-----~i~L-~~~~k~N~GfEGlA~d~~~~~l  195 (316)
T COG3204         128 ------FSDPETIEYIGGNQFVIVDERDRALYLFTVDADTTVISAKVQ-----KIPL-GTTNKKNKGFEGLAWDPVDHRL  195 (316)
T ss_pred             ------cCChhHeEEecCCEEEEEehhcceEEEEEEcCCccEEeccce-----EEec-cccCCCCcCceeeecCCCCceE
Confidence                  122345677777888888888888888888766433221111     0111 1111125678899999999999


Q ss_pred             EEEeCCCeEEEEcCCCcc----eeecccc-------cCCeEEEEEccCCCEEE-EEecCCcEEEEeCCCCceeEEe
Q psy12697        296 ATGSYDGYARIWTSDGSL----KSTLGQH-------KGPIFALKWNKRGNYIL-SAGVDKTTIIWDAASGQCEQQF  359 (602)
Q Consensus       296 ~~~~~dg~i~i~~~~~~~----~~~~~~~-------~~~i~~~~~~~~~~~l~-~~~~dg~i~~wd~~~~~~~~~~  359 (602)
                      .++-+..-+.+|..++..    ......+       -..|.++.|.+..+.|+ -+..++.+.-.|.. |..+..+
T Consensus       196 ~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~-G~~~~~l  270 (316)
T COG3204         196 FVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLS-GEVIELL  270 (316)
T ss_pred             EEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccceecCCCCcEEEEecCCceEEEEecC-CCeeeeE
Confidence            998888878887755322    1111111       23466778887555544 44455555556644 4434433

>KOG2395|consensus

Probab=97.16  E-value=0.026  Score=54.13  Aligned_cols=143  Identities=9%  Similarity=0.103  Sum_probs=96.6

Q ss_pred             EEEeeCCCeEEEEEcCCCceeeEeccCCCCeEEEEECCCCCE-------EEEEECCCeEEEEeCCCCee--eEeeccccc
Q psy12697        377 FASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLL-------LASCSDDMTLKIWSLDKDNC--VHDLQAHNK  447 (602)
Q Consensus       377 ~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~-------l~~~~~dg~i~iwd~~~~~~--~~~~~~~~~  447 (602)
                      +..+.....++-.|+..|+.+..+.-+.. |+-+.+.|+.+.       -+.|-+|..|.-||.+-...  +...+.|.-
T Consensus       349 l~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy  427 (644)
T KOG2395|consen  349 LMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQY  427 (644)
T ss_pred             eeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeecccc
Confidence            45566667899999999999999987776 888888886542       24566778899999873211  111111110


Q ss_pred             cEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeeecccCCCeeE
Q psy12697        448 EIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALD  527 (602)
Q Consensus       448 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~  527 (602)
                                                    .......|++-..+| ++++|+.+|.|++||--..+....+.+-..+|..
T Consensus       428 ------------------------------~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~h  476 (644)
T KOG2395|consen  428 ------------------------------STKNNFSCFATTESG-YIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKH  476 (644)
T ss_pred             ------------------------------ccccccceeeecCCc-eEEEeecCCcEEeehhhhhhhhhcccccCCceee
Confidence                                          012223344444344 6899999999999997434444567788889999


Q ss_pred             eeecCCceEEEeeCCCcEEEeecC
Q psy12697        528 VDWQSNTSFASCSTDQHIHVCKLH  551 (602)
Q Consensus       528 ~~~s~~~~l~~~~~d~~i~iw~~~  551 (602)
                      +..+.||..+.|..+..+.+-++.
T Consensus       477 VdvtadGKwil~Tc~tyLlLi~t~  500 (644)
T KOG2395|consen  477 VDVTADGKWILATCKTYLLLIDTL  500 (644)
T ss_pred             EEeeccCcEEEEecccEEEEEEEe
Confidence            999999955555666777777664

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=97.05  E-value=0.23  Score=52.45  Aligned_cols=211  Identities=13%  Similarity=0.164  Sum_probs=117.4

Q ss_pred             CCEEEEEecCCcEEEEeCCCCceeEEeeeccCC--------eeeeec-----------------cCCCeEEEeeCCCeEE
Q psy12697        333 GNYILSAGVDKTTIIWDAASGQCEQQFSFHSAP--------ALDVDW-----------------QSNTSFASCSTDQHIH  387 (602)
Q Consensus       333 ~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~--------~~~~~~-----------------~~~~~~~~~~~~~~i~  387 (602)
                      +..++.++.++.|.-.|..+|+.+.++......        ...+.+                 ..+++++.++.|+.+.
T Consensus       194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li  273 (764)
T TIGR03074       194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI  273 (764)
T ss_pred             CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence            445666677778888888888877766543221        011111                 1235788899999999


Q ss_pred             EEEcCCCceeeEeccCCCCe-------------EEEEECC--CCCEEEEEEC----------CCeEEEEeCCCCeeeEee
Q psy12697        388 VCKLHSDKPVKSFEGHTNEV-------------NAIKWDP--QGLLLASCSD----------DMTLKIWSLDKDNCVHDL  442 (602)
Q Consensus       388 i~d~~~~~~~~~~~~~~~~i-------------~~~~~~~--~~~~l~~~~~----------dg~i~iwd~~~~~~~~~~  442 (602)
                      -.|.++++.+..+.. .+.+             ..+.-.|  .+..+++|+.          +|.|+-+|.++++.+..+
T Consensus       274 ALDA~TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~  352 (764)
T TIGR03074       274 ALDADTGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAW  352 (764)
T ss_pred             EEECCCCCEEEEecC-CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEE
Confidence            999999998876642 1111             0112222  2345666643          688999999999998887


Q ss_pred             ccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEE------------------EeCCCeE
Q psy12697        443 QAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILS------------------AGVDKTT  504 (602)
Q Consensus       443 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s------------------~~~dg~i  504 (602)
                      ...........  +.+........+              .=..++++++..++..                  ....+.|
T Consensus       353 ~~g~p~~~~~~--~~g~~~~~gg~n--------------~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~sl  416 (764)
T TIGR03074       353 DPGNPDPTAPP--APGETYTRNTPN--------------SWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSL  416 (764)
T ss_pred             ecCCCCcccCC--CCCCEeccCCCC--------------ccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceE
Confidence            53211110000  000000000000              0011111221111111                  1224668


Q ss_pred             EEEeCCCCceeeeecccCCCee---------EeeecC-Cc----eEEEeeCCCcEEEeecCCCCceeeee
Q psy12697        505 IIWDAASGQCEQQFSFHSAPAL---------DVDWQS-NT----SFASCSTDQHIHVCKLHSDKPVKSFE  560 (602)
Q Consensus       505 ~iwd~~~~~~~~~~~~~~~~v~---------~~~~s~-~~----~l~~~~~d~~i~iw~~~~~~~~~~~~  560 (602)
                      .-.|+++|+..-.++.....+.         -+.+.. +|    .++.++.+|.+++.|-++++++...+
T Consensus       417 vALD~~TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~~  486 (764)
T TIGR03074       417 VALDATTGKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPVE  486 (764)
T ss_pred             EEEeCCCCceEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEeece
Confidence            8889999998876664211111         112222 44    68889999999999999999877653

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>KOG2395|consensus

Probab=97.02  E-value=0.013  Score=55.99  Aligned_cols=144  Identities=10%  Similarity=0.031  Sum_probs=92.7

Q ss_pred             EEEEECCCeEEEEeCCCCeeeEeeccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEE
Q psy12697        419 LASCSDDMTLKIWSLDKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSA  498 (602)
Q Consensus       419 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~  498 (602)
                      |.++.....++-.|+..|+.+.....+.. |.-+.+.|+......                         .+  ..-+.|
T Consensus       349 l~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql-------------------------~~--e~TlvG  400 (644)
T KOG2395|consen  349 LMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQL-------------------------TS--EQTLVG  400 (644)
T ss_pred             eeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcc-------------------------cc--cccEEe
Confidence            33444556788889999999888876655 666666666542111                         01  112345


Q ss_pred             eCCCeEEEEeCCCCc--eeeeeccc----CCCeeEeeecCCceEEEeeCCCcEEEeecCCCCceeeeecccccceEEEEe
Q psy12697        499 GVDKTTIIWDAASGQ--CEQQFSFH----SAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEGHTTGQLVHSYK  572 (602)
Q Consensus       499 ~~dg~i~iwd~~~~~--~~~~~~~~----~~~v~~~~~s~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~  572 (602)
                      -.|..|.-||.+-..  .+..-.+|    ...-.|++-..+|++++|+.+|.|++||--..+....+++.          
T Consensus       401 Ls~n~vfriDpRv~~~~kl~~~q~kqy~~k~nFsc~aTT~sG~IvvgS~~GdIRLYdri~~~AKTAlPgL----------  470 (644)
T KOG2395|consen  401 LSDNSVFRIDPRVQGKNKLAVVQSKQYSTKNNFSCFATTESGYIVVGSLKGDIRLYDRIGRRAKTALPGL----------  470 (644)
T ss_pred             ecCCceEEecccccCcceeeeeeccccccccccceeeecCCceEEEeecCCcEEeehhhhhhhhhccccc----------
Confidence            567789999986322  22222222    22456777777889999999999999996222222233332          


Q ss_pred             cCCcEEEEEECCCCCeEEEeccCCeEEee
Q psy12697        573 GTGGIFEVCWNSRGDKVGASASDGSVFKN  601 (602)
Q Consensus       573 ~~~~i~~l~~spdg~~l~~~~~dg~v~i~  601 (602)
                       ..+|..+..+.||++|++.+..-.+.|.
T Consensus       471 -G~~I~hVdvtadGKwil~Tc~tyLlLi~  498 (644)
T KOG2395|consen  471 -GDAIKHVDVTADGKWILATCKTYLLLID  498 (644)
T ss_pred             -CCceeeEEeeccCcEEEEecccEEEEEE
Confidence             3789999999999999887766555443

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.99  E-value=0.18  Score=44.70  Aligned_cols=224  Identities=19%  Similarity=0.222  Sum_probs=116.9

Q ss_pred             eeeeecccceeeeeeeccCCc--eEEEEECCCCCeEEEeeCC-----ceEEEEecCCceeEEEeeccCceEEEEeCCCCC
Q psy12697        122 LPLWDVERGECLNTLTRHTEP--VYSVAFSPDGKFLASGSFD-----KCVHIWSARTGQLVHSYKGTGGIFEVCWNSRGT  194 (602)
Q Consensus       122 i~vwd~~~~~~~~~l~~h~~~--V~~~~~s~d~~~l~s~~~d-----~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (602)
                      ..++|..+++.+.++...++.  --.=.|||||.+|...-.|     |.|-|||.+.+-..                   
T Consensus        93 ~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~~fqr-------------------  153 (366)
T COG3490          93 AMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAREGFQR-------------------  153 (366)
T ss_pred             EEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEecccccce-------------------
Confidence            467888877766655432221  1223799999999876443     78999998744211                   


Q ss_pred             CCCCCCCccccccccccCCcceEeeCCCcceEEEEEcCCCCEEEEeeCCCcEEEE-eCCCCCCC-CCccceEEEEE--E-
Q psy12697        195 PPNPPESMEVDASIEIPQSKATKLIGHESEVFICAWNPVKDFLASGSGDSTARIW-DMTDSTKK-DPKELQIVLRH--C-  269 (602)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iw-~~~~~~~~-~~~~~~~~~~~--~-  269 (602)
                                          ...+..|.-.-..+.|.+||+.++.+.  |-|... |....+.. ...+....+..  . 
T Consensus       154 --------------------vgE~~t~GiGpHev~lm~DGrtlvvan--GGIethpdfgR~~lNldsMePSlvlld~atG  211 (366)
T COG3490         154 --------------------VGEFSTHGIGPHEVTLMADGRTLVVAN--GGIETHPDFGRTELNLDSMEPSLVLLDAATG  211 (366)
T ss_pred             --------------------ecccccCCcCcceeEEecCCcEEEEeC--CceecccccCccccchhhcCccEEEEecccc
Confidence                                122344555666788888998888764  334443 22111100 00000000000  0 


Q ss_pred             -ecCCCcc--cCCCCceeEEeeCCCCCeEEEEeCCCe-------EEEEcCCCcceeecc-------cccCCeEEEEEccC
Q psy12697        270 -ISKGGTE--VPSNKDVTSLDWNNNGSFLATGSYDGY-------ARIWTSDGSLKSTLG-------QHKGPIFALKWNKR  332 (602)
Q Consensus       270 -~~~~~~~--~~~~~~i~~~~~~~~~~~l~~~~~dg~-------i~i~~~~~~~~~~~~-------~~~~~i~~~~~~~~  332 (602)
                       ...+...  ..+.-.|..++..+||...+.+-..|.       |-.. ..++....+.       .....|-+++.+.+
T Consensus       212 ~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~-~~g~~l~~~~~pee~~~~~anYigsiA~n~~  290 (366)
T COG3490         212 NLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHF-RKGEPLEFLDLPEEQTAAFANYIGSIAANRR  290 (366)
T ss_pred             chhhhccCchhhhhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeec-cCCCcCcccCCCHHHHHHHHhhhhheeeccc
Confidence             0000000  112356788888888876665544331       1111 1122222211       22345667777765


Q ss_pred             CCEEEEEe-cCCcEEEEeCCCCceeEEeeeccCCeeeeeccCCCeEEEeeCCCeEEEEE
Q psy12697        333 GNYILSAG-VDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTSFASCSTDQHIHVCK  390 (602)
Q Consensus       333 ~~~l~~~~-~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d  390 (602)
                      ...++..+ ..+...+||..+|..+..-...+..  .+. ...+-|++.+.+|.+.++.
T Consensus       291 ~glV~lTSP~GN~~vi~da~tG~vv~~a~l~daa--Gva-~~~~gf~vssg~G~~~~~s  346 (366)
T COG3490         291 DGLVALTSPRGNRAVIWDAATGAVVSEAALPDAA--GVA-AAKGGFAVSSGQGRIIFYS  346 (366)
T ss_pred             CCeEEEecCCCCeEEEEEcCCCcEEecccccccc--cce-eccCceEEecCCceEEecc
Confidence            55555444 4556789999999877654332221  111 1234577777788887764

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=96.92  E-value=0.0034  Score=39.03  Aligned_cols=34  Identities=21%  Similarity=0.258  Sum_probs=30.0

Q ss_pred             CCceEEEEECCCCCeEEEeeCCceEEEEecCCcee
Q psy12697        140 TEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQL  174 (602)
Q Consensus       140 ~~~V~~~~~s~d~~~l~s~~~d~~v~iwd~~~~~~  174 (602)
                      ...|.+++|+|...+||.++.||.|.|+.+ +++.
T Consensus        11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr   44 (47)
T PF12894_consen   11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR   44 (47)
T ss_pred             CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence            356999999999999999999999999998 5544

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=96.92  E-value=0.14  Score=46.47  Aligned_cols=152  Identities=14%  Similarity=0.132  Sum_probs=84.9

Q ss_pred             CeEEEEECCCCCEEEEEE---CCCeEEEEeCCCCeeeEeeccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCC
Q psy12697        406 EVNAIKWDPQGLLLASCS---DDMTLKIWSLDKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGP  482 (602)
Q Consensus       406 ~i~~~~~~~~~~~l~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  482 (602)
                      .+.+.+++++++.++...   ....+.++...  ....... .                                  ...
T Consensus        25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~--~~~~~~~-~----------------------------------g~~   67 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAG--GPVRPVL-T----------------------------------GGS   67 (253)
T ss_pred             cccceEECCCCCeEEEEEEcCCCCEEEEEcCC--Ccceeec-c----------------------------------CCc
Confidence            688999999999887766   23345555433  2222111 0                                  113


Q ss_pred             eEEEEEccCCCEEEEEeCCCeEEEEe-CCCCcee-eeeccc--CCCeeEeeecCCc-eEEEee---CCCcEEEeecCCCC
Q psy12697        483 IFALKWNKRGNYILSAGVDKTTIIWD-AASGQCE-QQFSFH--SAPALDVDWQSNT-SFASCS---TDQHIHVCKLHSDK  554 (602)
Q Consensus       483 v~~i~~s~~~~~l~s~~~dg~i~iwd-~~~~~~~-~~~~~~--~~~v~~~~~s~~~-~l~~~~---~d~~i~iw~~~~~~  554 (602)
                      +..-.|++++...+....+...+++. ..++... ......  ...|..+.+|||| ++|...   .++.|.+=-+....
T Consensus        68 l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~  147 (253)
T PF10647_consen   68 LTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDG  147 (253)
T ss_pred             cccccccCCCCEEEEEcCCCceEEEEecCCCcceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCC
Confidence            44556777776666666666666663 3333322 112211  1289999999999 666554   45777776654221


Q ss_pred             ceeeeecccccceEEEE-ecCCcEEEEEECCCCCeEEEeccCCe
Q psy12697        555 PVKSFEGHTTGQLVHSY-KGTGGIFEVCWNSRGDKVGASASDGS  597 (602)
Q Consensus       555 ~~~~~~~~~~~~~~~~~-~~~~~i~~l~~spdg~~l~~~~~dg~  597 (602)
                      .-  . ........... .....+.+++|.+++.+++.+...+.
T Consensus       148 ~g--~-~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V~~~~~~~  188 (253)
T PF10647_consen  148 DG--V-PRRLTGPRRVAPPLLSDVTDVAWSDDSTLVVLGRSAGG  188 (253)
T ss_pred             CC--C-cceeccceEecccccCcceeeeecCCCEEEEEeCCCCC
Confidence            10  0 00000111111 11357899999999998877766543

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.89  E-value=0.11  Score=46.03  Aligned_cols=156  Identities=15%  Similarity=0.198  Sum_probs=94.2

Q ss_pred             eeCCCCCeEEEEeCC-----CeEEEEcCCCc--ceeecccccCCeEEEEEccCCCEEEEEec------------------
Q psy12697        287 DWNNNGSFLATGSYD-----GYARIWTSDGS--LKSTLGQHKGPIFALKWNKRGNYILSAGV------------------  341 (602)
Q Consensus       287 ~~~~~~~~l~~~~~d-----g~i~i~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~l~~~~~------------------  341 (602)
                      .|||||.+|...-.|     |.|-+||.+..  .+-.+..|.-....+.|.+||+.++.+..                  
T Consensus       120 vfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsM  199 (366)
T COG3490         120 VFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSM  199 (366)
T ss_pred             ccCCCCcEEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhc
Confidence            589999999876544     78999998743  34456677777788999999999887642                  


Q ss_pred             CCcEEEEeCCCCceeEEeee----ccCCeeeeeccCCCeEEEeeC------CCeEEEEEcCCCceeeEecc-------CC
Q psy12697        342 DKTTIIWDAASGQCEQQFSF----HSAPALDVDWQSNTSFASCST------DQHIHVCKLHSDKPVKSFEG-------HT  404 (602)
Q Consensus       342 dg~i~~wd~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~------~~~i~i~d~~~~~~~~~~~~-------~~  404 (602)
                      .-++.+.|..+|..+.+...    +...+..++..+++.+..+..      |---.+=-...++++..+..       ..
T Consensus       200 ePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~a  279 (366)
T COG3490         200 EPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFA  279 (366)
T ss_pred             CccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHH
Confidence            12344555555555443322    233455666666666555532      11111111222333333322       23


Q ss_pred             CCeEEEEECCCCCEEEEEECC-CeEEEEeCCCCeeeEee
Q psy12697        405 NEVNAIKWDPQGLLLASCSDD-MTLKIWSLDKDNCVHDL  442 (602)
Q Consensus       405 ~~i~~~~~~~~~~~l~~~~~d-g~i~iwd~~~~~~~~~~  442 (602)
                      ..|-+++.+.+..+++..+-. +...+||..++..+...
T Consensus       280 nYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~vv~~a  318 (366)
T COG3490         280 NYIGSIAANRRDGLVALTSPRGNRAVIWDAATGAVVSEA  318 (366)
T ss_pred             hhhhheeecccCCeEEEecCCCCeEEEEEcCCCcEEecc
Confidence            457788888766666655544 56789999998876543

>PHA02713 hypothetical protein; Provisional

Probab=96.83  E-value=0.076  Score=54.53  Aligned_cols=33  Identities=6%  Similarity=0.030  Sum_probs=24.1

Q ss_pred             CCCEEEEEeCCC--eEEEEeCCCCceeeeecccCC
Q psy12697        491 RGNYILSAGVDK--TTIIWDAASGQCEQQFSFHSA  523 (602)
Q Consensus       491 ~~~~l~s~~~dg--~i~iwd~~~~~~~~~~~~~~~  523 (602)
                      +|++.++||.||  .+..||..+.+-......|+.
T Consensus       512 ~~~iyv~Gg~~~~~~~e~yd~~~~~W~~~~~~~~~  546 (557)
T PHA02713        512 DNTIMMLHCYESYMLQDTFNVYTYEWNHICHQHSN  546 (557)
T ss_pred             CCEEEEEeeecceeehhhcCcccccccchhhhcCC
Confidence            778889999888  788888887765554444543

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=96.81  E-value=0.57  Score=49.66  Aligned_cols=69  Identities=14%  Similarity=0.163  Sum_probs=47.0

Q ss_pred             CCEEEEEecCCcEEEEeCCCCceeEEeeeccC--------Ce----eeeeccC---CCeEEEeeC----------CCeEE
Q psy12697        333 GNYILSAGVDKTTIIWDAASGQCEQQFSFHSA--------PA----LDVDWQS---NTSFASCST----------DQHIH  387 (602)
Q Consensus       333 ~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~--------~~----~~~~~~~---~~~~~~~~~----------~~~i~  387 (602)
                      +..++.++.|+.+.-.|.++|+....+.....        ..    ....-.|   ++.+++++.          +|.|+
T Consensus       260 ~~rV~~~T~Dg~LiALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~  339 (764)
T TIGR03074       260 ARRIILPTSDARLIALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIR  339 (764)
T ss_pred             CCEEEEecCCCeEEEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEE
Confidence            45788899999999999999998876532110        00    0111111   456677643          68899


Q ss_pred             EEEcCCCceeeEec
Q psy12697        388 VCKLHSDKPVKSFE  401 (602)
Q Consensus       388 i~d~~~~~~~~~~~  401 (602)
                      -+|.++++.+-.+.
T Consensus       340 A~Da~TGkl~W~~~  353 (764)
T TIGR03074       340 AFDVNTGALVWAWD  353 (764)
T ss_pred             EEECCCCcEeeEEe
Confidence            99999999877664

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=96.78  E-value=0.53  Score=45.01  Aligned_cols=231  Identities=10%  Similarity=0.100  Sum_probs=102.1

Q ss_pred             CCCEEEEEe-cCCcEEEEeCCCC----ceeEEeee---cc----CCeeeeeccCCC-eEEEee------CCCeEEEEEcC
Q psy12697        332 RGNYILSAG-VDKTTIIWDAASG----QCEQQFSF---HS----APALDVDWQSNT-SFASCS------TDQHIHVCKLH  392 (602)
Q Consensus       332 ~~~~l~~~~-~dg~i~~wd~~~~----~~~~~~~~---~~----~~~~~~~~~~~~-~~~~~~------~~~~i~i~d~~  392 (602)
                      +.++|+..+ ..+.|.+.|+.+.    +..+.+..   ..    .....+...|++ .++++-      ..|.+.++|-+
T Consensus        86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~  165 (461)
T PF05694_consen   86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGE  165 (461)
T ss_dssp             -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TT
T ss_pred             cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCc
Confidence            456777766 6788999998743    33333332   11    112233334555 444432      23567888887


Q ss_pred             CCceeeEeccCC---CCeEEEEECCCCCEEEEEE--------------------CCCeEEEEeCCCCeeeEeeccccc--
Q psy12697        393 SDKPVKSFEGHT---NEVNAIKWDPQGLLLASCS--------------------DDMTLKIWSLDKDNCVHDLQAHNK--  447 (602)
Q Consensus       393 ~~~~~~~~~~~~---~~i~~~~~~~~~~~l~~~~--------------------~dg~i~iwd~~~~~~~~~~~~~~~--  447 (602)
                      +.+.........   ..-..+-+.|..+.++|..                    .-.++.+||+.+.+.++++.....  
T Consensus       166 tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~  245 (461)
T PF05694_consen  166 TFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQ  245 (461)
T ss_dssp             T--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEE
T ss_pred             cccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCC
Confidence            777666655432   2345677788878887764                    235799999999999998875432  


Q ss_pred             cEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCE-EEEEeCCCeEEEEeC-CCCce----eeeec--
Q psy12697        448 EIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNY-ILSAGVDKTTIIWDA-ASGQC----EQQFS--  519 (602)
Q Consensus       448 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~-l~s~~~dg~i~iwd~-~~~~~----~~~~~--  519 (602)
                      ....+.|..+..                                ..+ ++.+...++|..|-- +.++-    +..+.  
T Consensus       246 ~pLEvRflH~P~--------------------------------~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~  293 (461)
T PF05694_consen  246 MPLEVRFLHDPD--------------------------------ANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAK  293 (461)
T ss_dssp             EEEEEEE-SSTT----------------------------------EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--E
T ss_pred             ceEEEEecCCCC--------------------------------ccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCc
Confidence            344555554432                                122 232233444444432 22221    11111  


Q ss_pred             ---------------ccCCCeeEeeecCCc--eEEEeeCCCcEEEeecCCCCceeeeecccccceE--------EEEecC
Q psy12697        520 ---------------FHSAPALDVDWQSNT--SFASCSTDQHIHVCKLHSDKPVKSFEGHTTGQLV--------HSYKGT  574 (602)
Q Consensus       520 ---------------~~~~~v~~~~~s~~~--~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~--------~~~~~~  574 (602)
                                     .-..-|+.+..|.|.  +.+++=.+|.|+.||+......+..-....|..+        .-.+..
T Consensus       294 ~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~  373 (461)
T PF05694_consen  294 KVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLR  373 (461)
T ss_dssp             E--SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------
T ss_pred             ccCcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccC
Confidence                           113457899999998  4556667999999999875322211111111100        001113


Q ss_pred             CcEEEEEECCCCCeEEEecc
Q psy12697        575 GGIFEVCWNSRGDKVGASAS  594 (602)
Q Consensus       575 ~~i~~l~~spdg~~l~~~~~  594 (602)
                      +...-|..|.||+.|.+.++
T Consensus       374 GgPqMvqlS~DGkRlYvTnS  393 (461)
T PF05694_consen  374 GGPQMVQLSLDGKRLYVTNS  393 (461)
T ss_dssp             S----EEE-TTSSEEEEE--
T ss_pred             CCCCeEEEccCCeEEEEEee
Confidence            45577889999999987753

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=96.76  E-value=0.35  Score=44.71  Aligned_cols=139  Identities=12%  Similarity=0.157  Sum_probs=73.6

Q ss_pred             EeCCCeEEEEcCCCcc-eeecccccCCeEEEEEccCCCEEEEEecCCcEEEEeCCCCceeEEeeeccCCeeeeeccCCCe
Q psy12697        298 GSYDGYARIWTSDGSL-KSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTS  376 (602)
Q Consensus       298 ~~~dg~i~i~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~  376 (602)
                      .+..|.|..=.-.|.. ......-.+.+..+.-+++|++++++.....+.-||--...-...-......+..+.|.+++.
T Consensus       120 ~~~~G~iy~T~DgG~tW~~~~~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~  199 (302)
T PF14870_consen  120 AGDRGAIYRTTDGGKTWQAVVSETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGN  199 (302)
T ss_dssp             EETT--EEEESSTTSSEEEEE-S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-
T ss_pred             EcCCCcEEEeCCCCCCeeEcccCCcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCC
Confidence            3444554433333333 223344557788999999999888887666667787554334444444667899999999999


Q ss_pred             EEEeeCCCeEEEEEcC-CCceeeE----eccCCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCee
Q psy12697        377 FASCSTDQHIHVCKLH-SDKPVKS----FEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNC  438 (602)
Q Consensus       377 ~~~~~~~~~i~i~d~~-~~~~~~~----~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~  438 (602)
                      +......|.|+.=+.. ..+....    +....-.+..++|.+++...++|+. |.+ +...+.++.
T Consensus       200 lw~~~~Gg~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~-G~l-~~S~DgGkt  264 (302)
T PF14870_consen  200 LWMLARGGQIQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGS-GTL-LVSTDGGKT  264 (302)
T ss_dssp             EEEEETTTEEEEEE-TTEEEEE---B-TTSS--S-EEEEEESSSS-EEEEEST-T-E-EEESSTTSS
T ss_pred             EEEEeCCcEEEEccCCCCccccccccCCcccCceeeEEEEecCCCCEEEEeCC-ccE-EEeCCCCcc
Confidence            8888899999988722 2221111    1112234889999999887777665 433 334455543

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=96.58  E-value=0.0079  Score=37.39  Aligned_cols=34  Identities=18%  Similarity=0.345  Sum_probs=30.3

Q ss_pred             CCceeEEeeCCCCCeEEEEeCCCeEEEEcCCCcc
Q psy12697        280 NKDVTSLDWNNNGSFLATGSYDGYARIWTSDGSL  313 (602)
Q Consensus       280 ~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~  313 (602)
                      ...|.+++|+|...++|.++.+|.|.++.++++.
T Consensus        11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~~qr   44 (47)
T PF12894_consen   11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLNWQR   44 (47)
T ss_pred             CCcEEEEEECCCCCEEEEEECCCeEEEEECCCcC
Confidence            4669999999999999999999999999987654

>KOG4441|consensus

Probab=96.54  E-value=0.2  Score=51.46  Aligned_cols=184  Identities=9%  Similarity=0.083  Sum_probs=96.9

Q ss_pred             CCCEEEEEecC------CcEEEEeCCCCceeEEeeec-cCCeeeeeccCCCeEEEeeCC------CeEEEEEcCCCceee
Q psy12697        332 RGNYILSAGVD------KTTIIWDAASGQCEQQFSFH-SAPALDVDWQSNTSFASCSTD------QHIHVCKLHSDKPVK  398 (602)
Q Consensus       332 ~~~~l~~~~~d------g~i~~wd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~------~~i~i~d~~~~~~~~  398 (602)
                      .+..++.|+.+      ..+..+|..+++........ .....+++...+..+++|+.+      ..+..||....+-..
T Consensus       284 ~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~  363 (571)
T KOG4441|consen  284 SGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQWTP  363 (571)
T ss_pred             CCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEECCEEEEEccccCCCcccceEEEecCCCCceec
Confidence            34556666665      35778888877544333222 223455666677788999988      357788887765222


Q ss_pred             --EeccCCCCeEEEEECCCCCEEEEEECCCe-----EEEEeCCCCeeeEeeccccccEEEEEECCCCCCCCCCCcceeee
Q psy12697        399 --SFEGHTNEVNAIKWDPQGLLLASCSDDMT-----LKIWSLDKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFI  471 (602)
Q Consensus       399 --~~~~~~~~i~~~~~~~~~~~l~~~~~dg~-----i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~  471 (602)
                        .+..........  .-+|.+.|+|+.||.     +..||..+.+--..-                +            
T Consensus       364 ~a~M~~~R~~~~v~--~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va----------------~------------  413 (571)
T KOG4441|consen  364 VAPMNTKRSDFGVA--VLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVA----------------P------------  413 (571)
T ss_pred             cCCccCccccceeE--EECCEEEEEeccccccccccEEEecCCCCcccccC----------------C------------
Confidence              111111111111  126888899998864     556665543211000                0            


Q ss_pred             eeeccCCccCCeEEE-EEccCCCEEEEEeCCC------eEEEEeCCCCceee--eecccCCCeeEeeecCCceEEEeeCC
Q psy12697        472 LKSTLGQHKGPIFAL-KWNKRGNYILSAGVDK------TTIIWDAASGQCEQ--QFSFHSAPALDVDWQSNTSFASCSTD  542 (602)
Q Consensus       472 ~~~~~~~~~~~v~~i-~~s~~~~~l~s~~~dg------~i~iwd~~~~~~~~--~~~~~~~~v~~~~~s~~~~l~~~~~d  542 (602)
                             ........ .-.-+|++.++||.++      ++..||..+.....  .+...... ..++.-.+..++.||.|
T Consensus       414 -------m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~-~g~a~~~~~iYvvGG~~  485 (571)
T KOG4441|consen  414 -------MLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSG-FGVAVLNGKIYVVGGFD  485 (571)
T ss_pred             -------CCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCccccccc-ceEEEECCEEEEECCcc
Confidence                   00000111 1112677788888654      57788887765432  22211111 12333333377888877


Q ss_pred             Cc-----EEEeecCCC
Q psy12697        543 QH-----IHVCKLHSD  553 (602)
Q Consensus       543 ~~-----i~iw~~~~~  553 (602)
                      +.     |..||..+.
T Consensus       486 ~~~~~~~VE~ydp~~~  501 (571)
T KOG4441|consen  486 GTSALSSVERYDPETN  501 (571)
T ss_pred             CCCccceEEEEcCCCC
Confidence            63     666776554

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=96.53  E-value=0.55  Score=41.96  Aligned_cols=182  Identities=10%  Similarity=0.056  Sum_probs=108.0

Q ss_pred             ceEEEEEcCCCCEEEEeeCCC--cEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEeeCCCCCeEEEEeCC
Q psy12697        224 EVFICAWNPVKDFLASGSGDS--TARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFLATGSYD  301 (602)
Q Consensus       224 ~v~~~~~~~~~~~l~s~~~dg--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d  301 (602)
                      -...+.|..++.++-+.+.-|  .|+.+|+.+++......+.               ..----.++.. +++.....-.+
T Consensus        46 FTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~---------------~~~FgEGit~~-~d~l~qLTWk~  109 (264)
T PF05096_consen   46 FTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLP---------------PRYFGEGITIL-GDKLYQLTWKE  109 (264)
T ss_dssp             EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-T---------------TT--EEEEEEE-TTEEEEEESSS
T ss_pred             cCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECC---------------ccccceeEEEE-CCEEEEEEecC
Confidence            345677877888888887766  6888999887643211111               00001112222 23344455567


Q ss_pred             CeEEEEcCCC-cceeecccccCCeEEEEEccCCCEEEEEecCCcEEEEeCCCCceeEEeeeccC-----CeeeeeccCCC
Q psy12697        302 GYARIWTSDG-SLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSA-----PALDVDWQSNT  375 (602)
Q Consensus       302 g~i~i~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~-----~~~~~~~~~~~  375 (602)
                      +...+||.+. +...++. ..+.=..++  .+++.|+.+.....+.++|..+.+....+.....     .+..+.|..+.
T Consensus       110 ~~~f~yd~~tl~~~~~~~-y~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i~G~  186 (264)
T PF05096_consen  110 GTGFVYDPNTLKKIGTFP-YPGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYINGK  186 (264)
T ss_dssp             SEEEEEETTTTEEEEEEE--SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEETTE
T ss_pred             CeEEEEccccceEEEEEe-cCCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEEcCE
Confidence            8899999863 3333332 334556666  5677787777778899999999888777654322     34556666555


Q ss_pred             eEEEeeCCCeEEEEEcCCCceeeEecc---------------CCCCeEEEEECCCCCEEEEEEC
Q psy12697        376 SFASCSTDQHIHVCKLHSDKPVKSFEG---------------HTNEVNAIKWDPQGLLLASCSD  424 (602)
Q Consensus       376 ~~~~~~~~~~i~i~d~~~~~~~~~~~~---------------~~~~i~~~~~~~~~~~l~~~~~  424 (602)
                      .++=.-....|...|..+|+.+..+..               ..+-.+.||++|..+.|...+.
T Consensus       187 IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK  250 (264)
T PF05096_consen  187 IYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGK  250 (264)
T ss_dssp             EEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEET
T ss_pred             EEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeC
Confidence            566566677888889988887665421               1345889999997776666654

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>KOG2444|consensus

Probab=96.52  E-value=0.0081  Score=51.02  Aligned_cols=62  Identities=6%  Similarity=-0.008  Sum_probs=44.6

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCCceeeeecccC-CCeeEeeecCCc-eEEEe--eCCCcEEEeecCC
Q psy12697        491 RGNYILSAGVDKTTIIWDAASGQCEQQFSFHS-APALDVDWQSNT-SFASC--STDQHIHVCKLHS  552 (602)
Q Consensus       491 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~v~~~~~s~~~-~l~~~--~~d~~i~iw~~~~  552 (602)
                      ++.+..+++.||.|+.|++.-++.+.....|. .++.....+..+ .++.+  +.|..++.|++..
T Consensus       113 ~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~  178 (238)
T KOG2444|consen  113 DSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEK  178 (238)
T ss_pred             ccceeEEeccCCceeeeccccCceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchhh
Confidence            55688899999999999999888887777676 444444444433 55555  6777777777654

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=96.46  E-value=0.86  Score=43.42  Aligned_cols=31  Identities=29%  Similarity=0.500  Sum_probs=24.0

Q ss_pred             ceEEEEECCCCCeEEEeeCCceEEEEecCCcee
Q psy12697        142 PVYSVAFSPDGKFLASGSFDKCVHIWSARTGQL  174 (602)
Q Consensus       142 ~V~~~~~s~d~~~l~s~~~d~~v~iwd~~~~~~  174 (602)
                      ..+.|+|.|||+++++ ...|.|.+++ ..+..
T Consensus         3 ~P~~~a~~pdG~l~v~-e~~G~i~~~~-~~g~~   33 (331)
T PF07995_consen    3 NPRSMAFLPDGRLLVA-ERSGRIWVVD-KDGSL   33 (331)
T ss_dssp             SEEEEEEETTSCEEEE-ETTTEEEEEE-TTTEE
T ss_pred             CceEEEEeCCCcEEEE-eCCceEEEEe-CCCcC
Confidence            3578999999988775 5599999999 44443

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=96.46  E-value=0.34  Score=47.68  Aligned_cols=130  Identities=20%  Similarity=0.279  Sum_probs=78.0

Q ss_pred             eeCCCcceEEEEEcCCC----CEEEEeeCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEeeCCCCC
Q psy12697        218 LIGHESEVFICAWNPVK----DFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGS  293 (602)
Q Consensus       218 l~~h~~~v~~~~~~~~~----~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  293 (602)
                      ..|.-..|..++|.|-+    ..|++......|.+|.+..........+..  ..|-..    .+..---..+.|+|...
T Consensus        52 viGqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~s--QtcEi~----e~~pvLpQGCVWHPk~~  125 (671)
T PF15390_consen   52 VIGQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMS--QTCEIR----EPFPVLPQGCVWHPKKA  125 (671)
T ss_pred             EeeccceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceee--eeeecc----CCcccCCCcccccCCCc
Confidence            34556678999999853    356666677899999986433222111110  011000    00011234577999998


Q ss_pred             eEEEEeCCCeEEEEcCC--CcceeecccccCCeEEEEEccCCCEEEEEe-cCCcEEEEeCCCC
Q psy12697        294 FLATGSYDGYARIWTSD--GSLKSTLGQHKGPIFALKWNKRGNYILSAG-VDKTTIIWDAASG  353 (602)
Q Consensus       294 ~l~~~~~dg~i~i~~~~--~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~~wd~~~~  353 (602)
                      .|++-+....-.++++.  +..++.-....+.|.|.+|.+||++|+++- ..=.-++||-...
T Consensus       126 iL~VLT~~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~qK  188 (671)
T PF15390_consen  126 ILTVLTARDVSVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQK  188 (671)
T ss_pred             eEEEEecCceeEeeeeeeCCceEEEeccCCceEEEEEecCcCCEEEEEeCCeEEEEEecCchh
Confidence            88887766554555543  333333335677899999999999887653 3345678885543

>PHA02713 hypothetical protein; Provisional

Probab=96.45  E-value=0.29  Score=50.39  Aligned_cols=62  Identities=0%  Similarity=-0.018  Sum_probs=36.5

Q ss_pred             CCCEEEEEeCC------CeEEEEeCCC-Cc--eeeeecccCCCeeEeeecCCc-eEEEeeCCC--cEEEeecCCCC
Q psy12697        491 RGNYILSAGVD------KTTIIWDAAS-GQ--CEQQFSFHSAPALDVDWQSNT-SFASCSTDQ--HIHVCKLHSDK  554 (602)
Q Consensus       491 ~~~~l~s~~~d------g~i~iwd~~~-~~--~~~~~~~~~~~v~~~~~s~~~-~l~~~~~d~--~i~iw~~~~~~  554 (602)
                      +|++.+.||.+      ..+..||.++ .+  .+..+....... .++.. ++ ..++||.|+  .+..||..+.+
T Consensus       463 ~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~-~~~~~-~~~iyv~Gg~~~~~~~e~yd~~~~~  536 (557)
T PHA02713        463 KDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSAL-HTILH-DNTIMMLHCYESYMLQDTFNVYTYE  536 (557)
T ss_pred             CCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccc-eeEEE-CCEEEEEeeecceeehhhcCccccc
Confidence            56777777654      2467899886 33  333333222222 22222 45 788888888  67778876654

>PRK13684 Ycf48-like protein; Provisional

Probab=96.40  E-value=0.95  Score=43.19  Aligned_cols=268  Identities=8%  Similarity=0.072  Sum_probs=124.1

Q ss_pred             CCceeEEeeCCCCCeEEEEeCCCeEEEEcCCCcceeecc----cccCCeEEEEEccCCCEEEEEecCCcEEEEeCCC-Cc
Q psy12697        280 NKDVTSLDWNNNGSFLATGSYDGYARIWTSDGSLKSTLG----QHKGPIFALKWNKRGNYILSAGVDKTTIIWDAAS-GQ  354 (602)
Q Consensus       280 ~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~----~~~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~-~~  354 (602)
                      ...+.++.|..+.+-+++|. +|.|..=.-.|+.-....    .....+.++.|.++ ..++ ++..+.|..  ..+ |+
T Consensus        45 ~~~l~~v~F~d~~~g~avG~-~G~il~T~DgG~tW~~~~~~~~~~~~~l~~v~~~~~-~~~~-~G~~g~i~~--S~DgG~  119 (334)
T PRK13684         45 EANLLDIAFTDPNHGWLVGS-NRTLLETNDGGETWEERSLDLPEENFRLISISFKGD-EGWI-VGQPSLLLH--TTDGGK  119 (334)
T ss_pred             CCceEEEEEeCCCcEEEEEC-CCEEEEEcCCCCCceECccCCcccccceeeeEEcCC-cEEE-eCCCceEEE--ECCCCC
Confidence            45788899986666677765 454333211222222111    12334777887643 3333 344443332  222 22


Q ss_pred             eeEEeee---ccCCeeeeeccCCCeEEEeeCCCeEEEEEcCCCceeeEec-cCCCCeEEEEECCCCCEEEEEECCCeEEE
Q psy12697        355 CEQQFSF---HSAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFE-GHTNEVNAIKWDPQGLLLASCSDDMTLKI  430 (602)
Q Consensus       355 ~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~dg~i~i  430 (602)
                      .-.....   .......+....+..+..++..|.|..-+ ..++.-..+. .-...+..+.+.|++.+++++ ..|.+..
T Consensus       120 tW~~~~~~~~~~~~~~~i~~~~~~~~~~~g~~G~i~~S~-DgG~tW~~~~~~~~g~~~~i~~~~~g~~v~~g-~~G~i~~  197 (334)
T PRK13684        120 NWTRIPLSEKLPGSPYLITALGPGTAEMATNVGAIYRTT-DGGKNWEALVEDAAGVVRNLRRSPDGKYVAVS-SRGNFYS  197 (334)
T ss_pred             CCeEccCCcCCCCCceEEEEECCCcceeeeccceEEEEC-CCCCCceeCcCCCcceEEEEEECCCCeEEEEe-CCceEEE
Confidence            1111110   11111112212222233334444443222 1222222221 224568899999998766555 4464432


Q ss_pred             -EeCCCCeeeEeeccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCCCeEEEEeC
Q psy12697        431 -WSLDKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDA  509 (602)
Q Consensus       431 -wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~  509 (602)
                       +| ..++.-.....                                 .-...+.++.+.++++.++.+ ..|.+++=..
T Consensus       198 s~~-~gg~tW~~~~~---------------------------------~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~  242 (334)
T PRK13684        198 TWE-PGQTAWTPHQR---------------------------------NSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDP  242 (334)
T ss_pred             EcC-CCCCeEEEeeC---------------------------------CCcccceeeeEcCCCCEEEEe-cCCEEEEccC
Confidence             12 11111111111                                 123456677777787776654 5676653333


Q ss_pred             CCCceeeeecc----cCCCeeEeeecCCceEEEeeCCCcEEEeecCCCCceeeeecccccceEEEEecCCcEEEEEECCC
Q psy12697        510 ASGQCEQQFSF----HSAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEGHTTGQLVHSYKGTGGIFEVCWNSR  585 (602)
Q Consensus       510 ~~~~~~~~~~~----~~~~v~~~~~s~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd  585 (602)
                      ..|..-.....    ....+.++.+.|++.+..++.+|.+. .....++.-...+...        ........+.|..+
T Consensus       243 d~G~sW~~~~~~~~~~~~~l~~v~~~~~~~~~~~G~~G~v~-~S~d~G~tW~~~~~~~--------~~~~~~~~~~~~~~  313 (334)
T PRK13684        243 DDLESWSKPIIPEITNGYGYLDLAYRTPGEIWAGGGNGTLL-VSKDGGKTWEKDPVGE--------EVPSNFYKIVFLDP  313 (334)
T ss_pred             CCCCccccccCCccccccceeeEEEcCCCCEEEEcCCCeEE-EeCCCCCCCeECCcCC--------CCCcceEEEEEeCC
Confidence            44432222111    12347888999988566666777665 3434333222211100        01235777888777


Q ss_pred             CCeEEEeccCCeEE
Q psy12697        586 GDKVGASASDGSVF  599 (602)
Q Consensus       586 g~~l~~~~~dg~v~  599 (602)
                      ++.++ .+..|.|.
T Consensus       314 ~~~~~-~G~~G~il  326 (334)
T PRK13684        314 EKGFV-LGQRGVLL  326 (334)
T ss_pred             CceEE-ECCCceEE
Confidence            76655 55556543

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=96.40  E-value=0.71  Score=41.95  Aligned_cols=167  Identities=18%  Similarity=0.187  Sum_probs=87.9

Q ss_pred             ceEEEEECCCCCeEEEee---CCceEEEEecCCceeEEEeeccCceEEEEeCCCCCCCCCCCCccccccccc---cCCcc
Q psy12697        142 PVYSVAFSPDGKFLASGS---FDKCVHIWSARTGQLVHSYKGTGGIFEVCWNSRGTPPNPPESMEVDASIEI---PQSKA  215 (602)
Q Consensus       142 ~V~~~~~s~d~~~l~s~~---~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~  215 (602)
                      .+.+.++|+|++.+|...   ....+.++.  .+...........+....|++++.................   .....
T Consensus        25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~--~~~~~~~~~~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~  102 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGP--AGGPVRPVLTGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGEP  102 (253)
T ss_pred             cccceEECCCCCeEEEEEEcCCCCEEEEEc--CCCcceeeccCCccccccccCCCCEEEEEcCCCceEEEEecCCCccee
Confidence            688999999999887665   234455554  3333333323335566677777544333222222111110   01111


Q ss_pred             eEeeCC--CcceEEEEEcCCCCEEEEee---CCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEeeCC
Q psy12697        216 TKLIGH--ESEVFICAWNPVKDFLASGS---GDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNN  290 (602)
Q Consensus       216 ~~l~~h--~~~v~~~~~~~~~~~l~s~~---~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  290 (602)
                      ..+...  ...|..+.++|||..++...   .++.|.+=-+..........+.....       ........++.++|.+
T Consensus       103 ~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~-------~~~~~~~~v~~v~W~~  175 (253)
T PF10647_consen  103 VEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRR-------VAPPLLSDVTDVAWSD  175 (253)
T ss_pred             EEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceE-------ecccccCcceeeeecC
Confidence            111111  12899999999998877665   35677776655333221111111100       0111246789999999


Q ss_pred             CCCeEEEEeCCCe-EEE-EcCCCcceeec
Q psy12697        291 NGSFLATGSYDGY-ARI-WTSDGSLKSTL  317 (602)
Q Consensus       291 ~~~~l~~~~~dg~-i~i-~~~~~~~~~~~  317 (602)
                      ++.+++.+...+. +.. ....+.....+
T Consensus       176 ~~~L~V~~~~~~~~~~~~v~~dG~~~~~l  204 (253)
T PF10647_consen  176 DSTLVVLGRSAGGPVVRLVSVDGGPSTPL  204 (253)
T ss_pred             CCEEEEEeCCCCCceeEEEEccCCccccc
Confidence            9988877765543 333 44555444443

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>KOG3630|consensus

Probab=96.30  E-value=0.078  Score=55.90  Aligned_cols=134  Identities=13%  Similarity=0.097  Sum_probs=82.6

Q ss_pred             CCeEEEEEccCCCEEEEE--ecCCcEEEEeCCCCceeEE-----e------eeccCCeeeeeccCC--CeEEEeeCCCeE
Q psy12697        322 GPIFALKWNKRGNYILSA--GVDKTTIIWDAASGQCEQQ-----F------SFHSAPALDVDWQSN--TSFASCSTDQHI  386 (602)
Q Consensus       322 ~~i~~~~~~~~~~~l~~~--~~dg~i~~wd~~~~~~~~~-----~------~~~~~~~~~~~~~~~--~~~~~~~~~~~i  386 (602)
                      .+|..+...+|+...++.  +.+-.|..||++.......     +      ........++.|.|.  ...+++..|+.|
T Consensus       101 ~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl  180 (1405)
T KOG3630|consen  101 IPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSL  180 (1405)
T ss_pred             ccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccch
Confidence            345555566676654443  3344788899876433221     1      112234566778776  457888889999


Q ss_pred             EEEEcCCCceeeEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeeeEeeccc----cccEEEEEECC
Q psy12697        387 HVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHDLQAH----NKEIYTIKWSP  456 (602)
Q Consensus       387 ~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~----~~~i~~~~~~~  456 (602)
                      ++..+........--.-....++++|+|.|+.++.|-..|++.-|... .+....+...    ...|.++.|-.
T Consensus       181 ~V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~-leik~~ip~Pp~~e~yrvl~v~Wl~  253 (1405)
T KOG3630|consen  181 RVKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPS-LEIKSEIPEPPVEENYRVLSVTWLS  253 (1405)
T ss_pred             hhhhhhhhhhhhcccCcccceeeEEeccccceeeEecCCCeEEEeecc-cceeecccCCCcCCCcceeEEEEec
Confidence            988776544332222245568999999999999999999999988643 3333333221    24455555544

>KOG4441|consensus

Probab=96.29  E-value=0.56  Score=48.23  Aligned_cols=144  Identities=13%  Similarity=0.143  Sum_probs=81.1

Q ss_pred             CCCeEEEEeCCC-----eEEEEcCCCcceeecccccCCeEEEEE-ccCCCEEEEEecCC------cEEEEeCCCCceeEE
Q psy12697        291 NGSFLATGSYDG-----YARIWTSDGSLKSTLGQHKGPIFALKW-NKRGNYILSAGVDK------TTIIWDAASGQCEQQ  358 (602)
Q Consensus       291 ~~~~l~~~~~dg-----~i~i~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~l~~~~~dg------~i~~wd~~~~~~~~~  358 (602)
                      +|...|+|+.||     .+..||..................... .-+|...++||.++      ++..||..+++....
T Consensus       380 ~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~  459 (571)
T KOG4441|consen  380 DGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLI  459 (571)
T ss_pred             CCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeec
Confidence            577888999886     477788765544444333222222222 23566667777543      567888877765443


Q ss_pred             eeeccC-CeeeeeccCCCeEEEeeCCC-----eEEEEEcCCCceeeE--eccCCCCeEEEEECCCCCEEEEEECCC----
Q psy12697        359 FSFHSA-PALDVDWQSNTSFASCSTDQ-----HIHVCKLHSDKPVKS--FEGHTNEVNAIKWDPQGLLLASCSDDM----  426 (602)
Q Consensus       359 ~~~~~~-~~~~~~~~~~~~~~~~~~~~-----~i~i~d~~~~~~~~~--~~~~~~~i~~~~~~~~~~~l~~~~~dg----  426 (602)
                      -..... .-..++...+..+++|+.++     .+..||..+.+-...  +......+....+  +++..++|+.||    
T Consensus       460 ~~M~~~R~~~g~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~~~--~~~ly~vGG~~~~~~l  537 (571)
T KOG4441|consen  460 APMNTRRSGFGVAVLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSAVGVVVL--GGKLYAVGGFDGNNNL  537 (571)
T ss_pred             CCcccccccceEEEECCEEEEECCccCCCccceEEEEcCCCCceeEcccCccccccccEEEE--CCEEEEEecccCcccc
Confidence            322211 12235555667788888776     367788877653322  2222222222222  567788888775    


Q ss_pred             -eEEEEeCCCC
Q psy12697        427 -TLKIWSLDKD  436 (602)
Q Consensus       427 -~i~iwd~~~~  436 (602)
                       +|..||..+.
T Consensus       538 ~~ve~ydp~~d  548 (571)
T KOG4441|consen  538 NTVECYDPETD  548 (571)
T ss_pred             ceeEEcCCCCC
Confidence             4666665543

>KOG2280|consensus

Probab=96.28  E-value=0.59  Score=47.45  Aligned_cols=198  Identities=10%  Similarity=0.117  Sum_probs=101.1

Q ss_pred             CeEEEEcCCCcceeecccccCCeEEEEEccCCCEEEEEecCCcEEEEeCCCCceeEEe----eeccCCeeeeeccCCCeE
Q psy12697        302 GYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQF----SFHSAPALDVDWQSNTSF  377 (602)
Q Consensus       302 g~i~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~----~~~~~~~~~~~~~~~~~~  377 (602)
                      -.|+||+..|.....+.-..+.+..+.|+.+. .|++...+|++.+|++-... ....    ......|..+.+..+|..
T Consensus        64 ~~I~If~~sG~lL~~~~w~~~~lI~mgWs~~e-eLI~v~k~g~v~Vy~~~ge~-ie~~svg~e~~~~~I~ec~~f~~GVa  141 (829)
T KOG2280|consen   64 PYIRIFNISGQLLGRILWKHGELIGMGWSDDE-ELICVQKDGTVHVYGLLGEF-IESNSVGFESQMSDIVECRFFHNGVA  141 (829)
T ss_pred             eeEEEEeccccchHHHHhcCCCeeeecccCCc-eEEEEeccceEEEeecchhh-hcccccccccccCceeEEEEecCceE
Confidence            45899999998877766555588999999764 57788899999999975332 2221    122233444444444433


Q ss_pred             EEeeCCCeEEEEEcCCCceeeEecc---CCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeeeEeeccccccEEEEEE
Q psy12697        378 ASCSTDQHIHVCKLHSDKPVKSFEG---HTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHDLQAHNKEIYTIKW  454 (602)
Q Consensus       378 ~~~~~~~~i~i~d~~~~~~~~~~~~---~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~  454 (602)
                      + -..+|.+.+..-.......++..   ....-+|-...+++...        ..+.++.-.-.....+.....+....+
T Consensus       142 v-lt~~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~--------~~ll~v~~~v~~~~~q~~~~~~q~~~~  212 (829)
T KOG2280|consen  142 V-LTVSGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQS--------TILLDVDVAVGLHICQVEESRVQLHAL  212 (829)
T ss_pred             E-EecCCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcc--------eeEEeechhhhhcccceeccccccccc
Confidence            3 33344443332221111122211   11111222222221110        111111100000001111111222222


Q ss_pred             CCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeeec--ccCCCeeEeeecC
Q psy12697        455 SPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFS--FHSAPALDVDWQS  532 (602)
Q Consensus       455 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~--~~~~~v~~~~~s~  532 (602)
                      ++                      ..+.+..+..||+.++|+--...|.|.+-+.+..++...+.  .|..+ ..++|..
T Consensus       213 ~~----------------------~~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~~~~~~~p-~qm~Wcg  269 (829)
T KOG2280|consen  213 SW----------------------PNSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFNCTDHDPP-KQMAWCG  269 (829)
T ss_pred             CC----------------------CCceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccCCCCCCch-Hhceeec
Confidence            22                      13567788899999999999999999999888777776665  23222 2555544


Q ss_pred             C
Q psy12697        533 N  533 (602)
Q Consensus       533 ~  533 (602)
                      +
T Consensus       270 n  270 (829)
T KOG2280|consen  270 N  270 (829)
T ss_pred             C
Confidence            3

>KOG2079|consensus

Probab=96.25  E-value=0.019  Score=59.86  Aligned_cols=100  Identities=19%  Similarity=0.185  Sum_probs=71.1

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCC-ceeeeecccCCCeeEeeecCCc-eEEEeeCCCcEEEeecCCCCceeeeecccccceE
Q psy12697        491 RGNYILSAGVDKTTIIWDAASG-QCEQQFSFHSAPALDVDWQSNT-SFASCSTDQHIHVCKLHSDKPVKSFEGHTTGQLV  568 (602)
Q Consensus       491 ~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~~~~s~~~-~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~  568 (602)
                      .+-+++.|+..|.+-..|.... .+...-..-.++|++++|+.+| .++.|-.+|.|.+||+..+++++.+..+...   
T Consensus        98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap---  174 (1206)
T KOG2079|consen   98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAP---  174 (1206)
T ss_pred             eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCc---
Confidence            3456888888899988887643 1112222245789999999999 8888999999999999998888777654321   


Q ss_pred             EEEecCCcEEEEEECCCCCeEEEeccCCeE
Q psy12697        569 HSYKGTGGIFEVCWNSRGDKVGASASDGSV  598 (602)
Q Consensus       569 ~~~~~~~~i~~l~~spdg~~l~~~~~dg~v  598 (602)
                           ...|..+.+..++..+.++...|.+
T Consensus       175 -----~t~vi~v~~t~~nS~llt~D~~Gsf  199 (1206)
T KOG2079|consen  175 -----VTGVIFVGRTSQNSKLLTSDTGGSF  199 (1206)
T ss_pred             -----cceEEEEEEeCCCcEEEEccCCCce
Confidence                 2345555666666677777777754

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=96.23  E-value=1.1  Score=47.10  Aligned_cols=93  Identities=13%  Similarity=0.210  Sum_probs=55.0

Q ss_pred             CCeEEEEEccCCCEEEEEecCCcEEEEeCCC-CceeEEeeeccCCeeeeeccCCCeEEEeeCCCeEEEEEcCCCceeeEe
Q psy12697        322 GPIFALKWNKRGNYILSAGVDKTTIIWDAAS-GQCEQQFSFHSAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSF  400 (602)
Q Consensus       322 ~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~  400 (602)
                      -.|..+.++|+|.+++..|..| |.|..+.. .-....+......+.|-.+.-+..+                    . .
T Consensus        85 f~v~~i~~n~~g~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~--------------------~-~  142 (717)
T PF10168_consen   85 FEVHQISLNPTGSLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERF--------------------F-T  142 (717)
T ss_pred             eeEEEEEECCCCCEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEechhh--------------------c-c
Confidence            4688999999999999888766 44444432 1101111111122222111111111                    0 1


Q ss_pred             ccCCCCeEEEEECCC---CCEEEEEECCCeEEEEeCCCC
Q psy12697        401 EGHTNEVNAIKWDPQ---GLLLASCSDDMTLKIWSLDKD  436 (602)
Q Consensus       401 ~~~~~~i~~~~~~~~---~~~l~~~~~dg~i~iwd~~~~  436 (602)
                      ..+...|..+.|+|.   +..|++-..|+++|+||+...
T Consensus       143 ~~~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~~  181 (717)
T PF10168_consen  143 SNSSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISDP  181 (717)
T ss_pred             CCCCceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCCC
Confidence            123456889999995   588999999999999999653

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>KOG2444|consensus

Probab=96.03  E-value=0.025  Score=48.22  Aligned_cols=103  Identities=13%  Similarity=0.124  Sum_probs=69.1

Q ss_pred             CCEEEEEecCCcEEEEeCCCC-ceeEEeeeccCCeeeeeccCC--CeEEEeeCCCeEEEEEcCCCceeeEeccCC-CCeE
Q psy12697        333 GNYILSAGVDKTTIIWDAASG-QCEQQFSFHSAPALDVDWQSN--TSFASCSTDQHIHVCKLHSDKPVKSFEGHT-NEVN  408 (602)
Q Consensus       333 ~~~l~~~~~dg~i~~wd~~~~-~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~-~~i~  408 (602)
                      +..+++|+.+|.|.+|..... .....+......+.++.....  ....++..+|.|+.|+....+.+.....|. .++.
T Consensus        70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e  149 (238)
T KOG2444|consen   70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGE  149 (238)
T ss_pred             CceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCcc
Confidence            456899999999999987621 111112222233333333333  367888999999999999988887777777 5566


Q ss_pred             EEEECCCCCEEEEE--ECCCeEEEEeCCC
Q psy12697        409 AIKWDPQGLLLASC--SDDMTLKIWSLDK  435 (602)
Q Consensus       409 ~~~~~~~~~~l~~~--~~dg~i~iwd~~~  435 (602)
                      ....+..++.++..  |.|..++.|++..
T Consensus       150 ~~ivv~sd~~i~~a~~S~d~~~k~W~ve~  178 (238)
T KOG2444|consen  150 ELIVVGSDEFLKIADTSHDRVLKKWNVEK  178 (238)
T ss_pred             eeEEecCCceEEeeccccchhhhhcchhh
Confidence            66666666677777  7777777777754

>KOG4499|consensus

Probab=96.02  E-value=0.88  Score=39.23  Aligned_cols=143  Identities=13%  Similarity=0.225  Sum_probs=86.7

Q ss_pred             CceeEEeeCCCCCeEEEEeCC---------CeEEEEcCCCcceeecccccCCeEEEEEccCCCEEEEE-ecCCcEEEEe-
Q psy12697        281 KDVTSLDWNNNGSFLATGSYD---------GYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSA-GVDKTTIIWD-  349 (602)
Q Consensus       281 ~~i~~~~~~~~~~~l~~~~~d---------g~i~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~~wd-  349 (602)
                      .+.+.-..+|+|++++-.-.|         |.++.|-..++..... ..-.--+.++|+.+.+.+... +.+-+|.-|| 
T Consensus       109 nR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~h~v~~i~-~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~dy  187 (310)
T KOG4499|consen  109 NRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAGHQVELIW-NCVGISNGLAWDSDAKKFYYIDSLNYEVDAYDY  187 (310)
T ss_pred             cccccCccCCCCceeeeeeccccccccccccEEEEeccCCCceeee-hhccCCccccccccCcEEEEEccCceEEeeeec
Confidence            445666778999884432222         4445554433322222 112233567787776655543 4455665666 


Q ss_pred             -CCCCceeEEeeeccCCeeeeeccCCCeEEEeeCCCeEEEEEcCCCceeeEeccCCCCeEEEEECCCCCEEEEEECCCeE
Q psy12697        350 -AASGQCEQQFSFHSAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTL  428 (602)
Q Consensus       350 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i  428 (602)
                       ..+|...                           +.=.++|++..++...+.     .-.++++.+|++.+++-..++|
T Consensus       188 d~~tG~~s---------------------------nr~~i~dlrk~~~~e~~~-----PDGm~ID~eG~L~Va~~ng~~V  235 (310)
T KOG4499|consen  188 DCPTGDLS---------------------------NRKVIFDLRKSQPFESLE-----PDGMTIDTEGNLYVATFNGGTV  235 (310)
T ss_pred             CCCccccc---------------------------CcceeEEeccCCCcCCCC-----CCcceEccCCcEEEEEecCcEE
Confidence             4444321                           222356665544333222     2235557789999999999999


Q ss_pred             EEEeCCCCeeeEeeccccccEEEEEECC
Q psy12697        429 KIWSLDKDNCVHDLQAHNKEIYTIKWSP  456 (602)
Q Consensus       429 ~iwd~~~~~~~~~~~~~~~~i~~~~~~~  456 (602)
                      ...|..+++.+.++......+++++|--
T Consensus       236 ~~~dp~tGK~L~eiklPt~qitsccFgG  263 (310)
T KOG4499|consen  236 QKVDPTTGKILLEIKLPTPQITSCCFGG  263 (310)
T ss_pred             EEECCCCCcEEEEEEcCCCceEEEEecC
Confidence            9999999999999998888888888753

>PRK10115 protease 2; Provisional

Probab=95.98  E-value=2.7  Score=44.58  Aligned_cols=239  Identities=11%  Similarity=0.046  Sum_probs=116.7

Q ss_pred             CceEEEEECCCCCeEEEeeC-----CceEEEEecCCceeEEEeeccCceEEEEeCCCCCCCCCCCCccccccccccCCcc
Q psy12697        141 EPVYSVAFSPDGKFLASGSF-----DKCVHIWSARTGQLVHSYKGTGGIFEVCWNSRGTPPNPPESMEVDASIEIPQSKA  215 (602)
Q Consensus       141 ~~V~~~~~s~d~~~l~s~~~-----d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  215 (602)
                      -.+..+.+||||++|+.+..     ...|++-|+.+|+.+..                                      
T Consensus       127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~--------------------------------------  168 (686)
T PRK10115        127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPE--------------------------------------  168 (686)
T ss_pred             EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCc--------------------------------------
Confidence            45677899999998887632     34688888877753210                                      


Q ss_pred             eEeeCCCcceEEEEEcCCCCEEEEeeCC------CcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCcee-EEee
Q psy12697        216 TKLIGHESEVFICAWNPVKDFLASGSGD------STARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVT-SLDW  288 (602)
Q Consensus       216 ~~l~~h~~~v~~~~~~~~~~~l~s~~~d------g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~  288 (602)
                       .+. ..  -..++|.+|++.|+....+      ..|..+++.++......    +...          ...... ....
T Consensus       169 -~i~-~~--~~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~lgt~~~~d~l----v~~e----------~~~~~~~~~~~  230 (686)
T PRK10115        169 -LLD-NV--EPSFVWANDSWTFYYVRKHPVTLLPYQVWRHTIGTPASQDEL----VYEE----------KDDTFYVSLHK  230 (686)
T ss_pred             -ccc-Cc--ceEEEEeeCCCEEEEEEecCCCCCCCEEEEEECCCChhHCeE----EEee----------CCCCEEEEEEE
Confidence             000 11  1458999988766655432      35666777665322111    1000          011122 3333


Q ss_pred             CCCCCeEEEEeCC---CeEEEEcCC---CcceeecccccCCeEEEEEccCCCEEEEEecC--C--cEEEEeCCC-CceeE
Q psy12697        289 NNNGSFLATGSYD---GYARIWTSD---GSLKSTLGQHKGPIFALKWNKRGNYILSAGVD--K--TTIIWDAAS-GQCEQ  357 (602)
Q Consensus       289 ~~~~~~l~~~~~d---g~i~i~~~~---~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d--g--~i~~wd~~~-~~~~~  357 (602)
                      +.++++++..+..   +.+.+++..   +.....+.........+. ... ..+...+..  .  .|...++.. ++...
T Consensus       231 s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~ly~~tn~~~~~~~l~~~~~~~~~~~~~  308 (686)
T PRK10115        231 TTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLD-HYQ-HRFYLRSNRHGKNFGLYRTRVRDEQQWEE  308 (686)
T ss_pred             cCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEE-eCC-CEEEEEEcCCCCCceEEEecCCCcccCeE
Confidence            4477776655443   568888842   332222222222222222 222 333333321  2  343344442 22222


Q ss_pred             Eeeec-cCCeeeeeccCCCeEEEeeCCCeEEEEEcCC-CceeeEec-cCCCCeEEEEEC--CCC-CEEEEEEC---CCeE
Q psy12697        358 QFSFH-SAPALDVDWQSNTSFASCSTDQHIHVCKLHS-DKPVKSFE-GHTNEVNAIKWD--PQG-LLLASCSD---DMTL  428 (602)
Q Consensus       358 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~-~~~~~~~~-~~~~~i~~~~~~--~~~-~~l~~~~~---dg~i  428 (602)
                      .+... ...+..+.+..+..+++...++.-+++-+.. +..+..+. .....+..+.++  +++ .++++.+.   -+.+
T Consensus       309 l~~~~~~~~i~~~~~~~~~l~~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~  388 (686)
T PRK10115        309 LIPPRENIMLEGFTLFTDWLVVEERQRGLTSLRQINRKTREVIGIAFDDPAYVTWIAYNPEPETSRLRYGYSSMTTPDTL  388 (686)
T ss_pred             EECCCCCCEEEEEEEECCEEEEEEEeCCEEEEEEEcCCCCceEEecCCCCceEeeecccCCCCCceEEEEEecCCCCCEE
Confidence            22221 2356777777666677777777655544432 22333333 222223333444  343 34444433   3678


Q ss_pred             EEEeCCCCe
Q psy12697        429 KIWSLDKDN  437 (602)
Q Consensus       429 ~iwd~~~~~  437 (602)
                      ..+|+.+++
T Consensus       389 y~~d~~~~~  397 (686)
T PRK10115        389 FELDMDTGE  397 (686)
T ss_pred             EEEECCCCc
Confidence            888887654

>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A

Probab=95.91  E-value=2.4  Score=43.37  Aligned_cols=245  Identities=13%  Similarity=0.084  Sum_probs=108.5

Q ss_pred             ccCCCEEEEEecCCcEEEEeCCCCce--eEEeeec-cCCeeeeeccCCC--eEEEeeCCCe--EEEEEcCCCceeeEecc
Q psy12697        330 NKRGNYILSAGVDKTTIIWDAASGQC--EQQFSFH-SAPALDVDWQSNT--SFASCSTDQH--IHVCKLHSDKPVKSFEG  402 (602)
Q Consensus       330 ~~~~~~l~~~~~dg~i~~wd~~~~~~--~~~~~~~-~~~~~~~~~~~~~--~~~~~~~~~~--i~i~d~~~~~~~~~~~~  402 (602)
                      ..++..++.+..+|.+....+.....  ....-+. .....++.+..++  .+++|+.-|.  +..+....-+.+..+. 
T Consensus       219 ~~~~~~~lL~~e~G~l~~l~l~~~~~~i~i~~~g~~~~~~s~l~~l~~g~d~lf~gs~~gds~l~~~~~~~l~~~~~~~-  297 (504)
T PF10433_consen  219 DKDGDRILLQDEDGDLYLLTLDNDGGSISITYLGTLCSIASSLTYLKNGGDYLFVGSEFGDSQLLQISLSNLEVLDSLP-  297 (504)
T ss_dssp             STTSSEEEEEETTSEEEEEEEEEEEEEEEEEEEEE--S-ESEEEEESTT--EEEEEESSS-EEEEEEESESEEEEEEE--
T ss_pred             cCCCCEEEEEeCCCeEEEEEEEECCCeEEEEEcCCcCChhheEEEEcCCCEEEEEEEecCCcEEEEEeCCCcEEEEecc-
Confidence            45677889999999998887665331  1222222 4566778888888  8888887665  4444433333344444 


Q ss_pred             CCCCeEEEEECCC----CC------EEEEEE---CCCeEEEEeCCCCee--eEeeccc--cccEEEEEECCCC-CCC--C
Q psy12697        403 HTNEVNAIKWDPQ----GL------LLASCS---DDMTLKIWSLDKDNC--VHDLQAH--NKEIYTIKWSPTG-PET--S  462 (602)
Q Consensus       403 ~~~~i~~~~~~~~----~~------~l~~~~---~dg~i~iwd~~~~~~--~~~~~~~--~~~i~~~~~~~~~-~~~--~  462 (602)
                      .-++|..+++-+.    ..      .|++++   .+|.+++..-.-+-.  .......  -..++.+...... .++  .
T Consensus       298 N~~Pi~D~~v~~~~~~~~~~~~~~~~lv~~sG~g~~gsL~~lr~Gi~~~~~~~~~~~l~~v~~iW~l~~~~~~~~~lv~S  377 (504)
T PF10433_consen  298 NWGPIVDFCVVDSSNSGQPSNPSSDQLVACSGAGKRGSLRILRNGIGIEGLELASSELPGVTGIWTLKLSSSDHSYLVLS  377 (504)
T ss_dssp             ---SEEEEEEE-TSSSSS-------EEEEEESSGGG-EEEEEEESBEEE--EEEEEEESTEEEEEEE-SSSSSBSEEEEE
T ss_pred             CcCCccceEEeccccCCCCcccccceEEEEECcCCCCcEEEEeccCCceeeeeeccCCCCceEEEEeeecCCCceEEEEE
Confidence            3457888877531    11      455554   467888874321111  1111111  1222223222111 010  0


Q ss_pred             CCCcceeeeeeeccCCccCCeEEE---EEccCCCEEEEEeC---------CCeEEEEeCCCCceeeeecccC-CCeeEee
Q psy12697        463 NPNMSLIFILKSTLGQHKGPIFAL---KWNKRGNYILSAGV---------DKTTIIWDAASGQCEQQFSFHS-APALDVD  529 (602)
Q Consensus       463 ~~~~~~~~~~~~~~~~~~~~v~~i---~~s~~~~~l~s~~~---------dg~i~iwd~~~~~~~~~~~~~~-~~v~~~~  529 (602)
                      ......++.+..  ......+..+   .|..+...|+++..         ...|++.+...++....+.... ..|.+.+
T Consensus       378 ~~~~T~vl~~~~--~d~~e~~~e~~~~~f~~~~~Tl~~~~~~~~~ivQVt~~~i~l~~~~~~~~~~~w~~~~~~~I~~a~  455 (504)
T PF10433_consen  378 FPNETRVLQISE--GDDGEEVEEVEEDGFDTDEPTLAAGNVGDGRIVQVTPKGIRLIDLEDGKLTQEWKPPAGSIIVAAS  455 (504)
T ss_dssp             ESSEEEEEEES------SSEEEEE---TS-SSS-EEEEEEETTTEEEEEESSEEEEEESSSTSEEEEEE-TTS---SEEE
T ss_pred             cCCceEEEEEec--ccCCcchhhhhhccCCCCCCCeEEEEcCCCeEEEEecCeEEEEECCCCeEEEEEeCCCCCeEEEEE
Confidence            011111111110  0111111111   23334444444332         2337788877777776654333 3455555


Q ss_pred             ecCCceEEEeeCCCcEEEeecCCCCceeeeecccccceEEEEecCCcEEEEEECC
Q psy12697        530 WQSNTSFASCSTDQHIHVCKLHSDKPVKSFEGHTTGQLVHSYKGTGGIFEVCWNS  584 (602)
Q Consensus       530 ~s~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp  584 (602)
                      ... +.++.+..++.+..+.+............      ........|.++...|
T Consensus       456 ~~~-~~v~v~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~eis~l~i~p  503 (504)
T PF10433_consen  456 IND-PQVLVALSGGELVYFELDDNKISVSDNDE------TILELDNEISCLSIEP  503 (504)
T ss_dssp             ESS-SEEEEEE-TTEEEEEEEETTEEEEEEE----------EE-SS-EEEEE---
T ss_pred             ECC-CEEEEEEeCCcEEEEEEECCceeeeeecc------ccccCCCceEEEEeCC
Confidence            443 46777777888888887655432211100      0011346788887766

...

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=95.75  E-value=2.2  Score=41.62  Aligned_cols=59  Identities=15%  Similarity=0.066  Sum_probs=42.8

Q ss_pred             CCeEEEEeCCCeEEEEcCCCcceeecccccCCeEEEEEccCCCEEEEEecCCcEEEEeC
Q psy12697        292 GSFLATGSYDGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDA  350 (602)
Q Consensus       292 ~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~  350 (602)
                      ..++.+-+.||.+.+|+-+.-....+-...--.-.+.|.+..+.|++++.+..+..|..
T Consensus       145 ~~~IcVQS~DG~L~~feqe~~~f~~~lp~~llPgPl~Y~~~tDsfvt~sss~~l~~Yky  203 (418)
T PF14727_consen  145 RDFICVQSMDGSLSFFEQESFAFSRFLPDFLLPGPLCYCPRTDSFVTASSSWTLECYKY  203 (418)
T ss_pred             ceEEEEEecCceEEEEeCCcEEEEEEcCCCCCCcCeEEeecCCEEEEecCceeEEEecH
Confidence            36788889999999999876553333322223345778888889999998888888854

>KOG1916|consensus

Probab=95.64  E-value=0.03  Score=57.25  Aligned_cols=114  Identities=16%  Similarity=0.276  Sum_probs=69.0

Q ss_pred             CeEEEEcCC---Ccceeec-----ccccCCeEEEEEcc---CCCEEEEEecCCcEEEEeCCCCceeEEeeeccCCeeeee
Q psy12697        302 GYARIWTSD---GSLKSTL-----GQHKGPIFALKWNK---RGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVD  370 (602)
Q Consensus       302 g~i~i~~~~---~~~~~~~-----~~~~~~i~~~~~~~---~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~  370 (602)
                      |.+.+|+++   |+....+     ......+.-+.|.|   +..++..+-.++++++....+... ..+..|...+..++
T Consensus       153 g~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a  231 (1283)
T KOG1916|consen  153 GELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDMA  231 (1283)
T ss_pred             hhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCceeEeeechHHH-HHHHhcCCCcccHH
Confidence            678888854   4433222     22233444555554   556666777788888877655433 33344666666666


Q ss_pred             ccCCCeEEEeeCCCeEEEEEcCCCceeeEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEeCC-----CCeeeEeeccc
Q psy12697        371 WQSNTSFASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLD-----KDNCVHDLQAH  445 (602)
Q Consensus       371 ~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~-----~~~~~~~~~~~  445 (602)
                      +...+.+...                              .++|||+.++..+.||.++.|.+.     .-++++..+.|
T Consensus       232 ~~~~g~~~l~------------------------------~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkph  281 (1283)
T KOG1916|consen  232 FFAEGVLKLA------------------------------SLSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPH  281 (1283)
T ss_pred             HHhhchhhhe------------------------------eeCCCCcEEEEeecCCccceeeeeeeccccHhhhhccCCC
Confidence            5544432221                              179999999999999998888753     23445555555


Q ss_pred             c
Q psy12697        446 N  446 (602)
Q Consensus       446 ~  446 (602)
                      .
T Consensus       282 d  282 (1283)
T KOG1916|consen  282 D  282 (1283)
T ss_pred             C
Confidence            5

>KOG2280|consensus

Probab=95.54  E-value=0.7  Score=46.95  Aligned_cols=159  Identities=13%  Similarity=0.231  Sum_probs=86.6

Q ss_pred             CceeEEeeCCCCCeEEEEeCCCeEEEEcCCCcceeec----ccccCCeEEEEEccCCCEEEEEecCCcEEEEeCCCCcee
Q psy12697        281 KDVTSLDWNNNGSFLATGSYDGYARIWTSDGSLKSTL----GQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCE  356 (602)
Q Consensus       281 ~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~----~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~  356 (602)
                      ..+-.+.|+.+.. |++...+|.+++|+.-|......    ......|..+.+..+|-.+++  .+|.+.+.+-......
T Consensus        84 ~~lI~mgWs~~ee-LI~v~k~g~v~Vy~~~ge~ie~~svg~e~~~~~I~ec~~f~~GVavlt--~~g~v~~i~~~~~~~~  160 (829)
T KOG2280|consen   84 GELIGMGWSDDEE-LICVQKDGTVHVYGLLGEFIESNSVGFESQMSDIVECRFFHNGVAVLT--VSGQVILINGVEEPKL  160 (829)
T ss_pred             CCeeeecccCCce-EEEEeccceEEEeecchhhhcccccccccccCceeEEEEecCceEEEe--cCCcEEEEcCCCcchh
Confidence            4788999998765 66678999999999887766552    223345666666666644443  4555555432222222


Q ss_pred             EEeee-ccCCeeeeecc--CCCe----EE-EeeCCCeEEEEEcCCC-ceeeEeccCCCCeEEEEECCCCCEEEEEECCCe
Q psy12697        357 QQFSF-HSAPALDVDWQ--SNTS----FA-SCSTDQHIHVCKLHSD-KPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMT  427 (602)
Q Consensus       357 ~~~~~-~~~~~~~~~~~--~~~~----~~-~~~~~~~i~i~d~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~  427 (602)
                      ..+.. ........+|.  ++..    ++ +.-..+ ..++..... .....+......+..+.+||+.++|+--..+|.
T Consensus       161 ~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~-~~~~q~~~~~~q~~~~~~~~~~~~ki~VS~n~~~laLyt~~G~  239 (829)
T KOG2280|consen  161 RKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVG-LHICQVEESRVQLHALSWPNSSVVKISVSPNRRFLALYTETGK  239 (829)
T ss_pred             hhCCCCCCccCCCcceeEecCCCcceeEEeechhhh-hcccceecccccccccCCCCceEEEEEEcCCcceEEEEecCCc
Confidence            22221 11111112221  1111    11 100000 011111111 111222222456888999999999999999999


Q ss_pred             EEEEeCCCCeeeEeec
Q psy12697        428 LKIWSLDKDNCVHDLQ  443 (602)
Q Consensus       428 i~iwd~~~~~~~~~~~  443 (602)
                      |.+-+.+..+....+.
T Consensus       240 i~~vs~D~~~~lce~~  255 (829)
T KOG2280|consen  240 IWVVSIDLSQILCEFN  255 (829)
T ss_pred             EEEEecchhhhhhccC
Confidence            9999888776666554

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=95.17  E-value=1.2  Score=43.22  Aligned_cols=59  Identities=14%  Similarity=0.234  Sum_probs=35.6

Q ss_pred             CceeEEeeCCCCCeEEEEeCC-------------------CeEEEEcCCCcceeecccccCCeEEEEEccCCCEEEEE
Q psy12697        281 KDVTSLDWNNNGSFLATGSYD-------------------GYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSA  339 (602)
Q Consensus       281 ~~i~~~~~~~~~~~l~~~~~d-------------------g~i~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~  339 (602)
                      .....++|.|||.+.++-+..                   |.|.-++.++.....+...-.....++|+++|+.+++-
T Consensus       124 ~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pdg~~~e~~a~G~rnp~Gl~~d~~G~l~~td  201 (367)
T TIGR02604       124 HSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPDGGKLRVVAHGFQNPYGHSVDSWGDVFFCD  201 (367)
T ss_pred             ccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEecCCCeEEEEecCcCCCccceECCCCCEEEEc
Confidence            447789999999876654421                   34555555554444433333345678888888766553

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>KOG3630|consensus

Probab=95.17  E-value=0.41  Score=50.88  Aligned_cols=155  Identities=12%  Similarity=0.080  Sum_probs=93.3

Q ss_pred             cceEEEEEcCCCCEEEE--eeCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEeeCCCC-CeEEEEe
Q psy12697        223 SEVFICAWNPVKDFLAS--GSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNG-SFLATGS  299 (602)
Q Consensus       223 ~~v~~~~~~~~~~~l~s--~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~  299 (602)
                      -++..+...+|+...++  .+.+-.|..+|+.+-..........+..+     ...........++.|+|.- ...++..
T Consensus       101 ~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s-----~ts~ek~vf~~~~~wnP~vp~n~av~l  175 (1405)
T KOG3630|consen  101 IPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNS-----ATSFEKPVFQLKNVWNPLVPLNSAVDL  175 (1405)
T ss_pred             ccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccc-----cchhccccccccccccCCccchhhhhc
Confidence            34555666667654433  34445788899876544322211111111     0111123456788899853 3456677


Q ss_pred             CCCeEEEEcCCCcceeec-ccccCCeEEEEEccCCCEEEEEecCCcEEEEeCCCCceeEEeee----ccCCeeeeeccCC
Q psy12697        300 YDGYARIWTSDGSLKSTL-GQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSF----HSAPALDVDWQSN  374 (602)
Q Consensus       300 ~dg~i~i~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~----~~~~~~~~~~~~~  374 (602)
                      .|+.|++..+.......- .......++++|+|.|+.++.|-..|++.-|... ++....+..    ....+.+++|...
T Consensus       176 ~dlsl~V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~-leik~~ip~Pp~~e~yrvl~v~Wl~t  254 (1405)
T KOG3630|consen  176 SDLSLRVKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPS-LEIKSEIPEPPVEENYRVLSVTWLST  254 (1405)
T ss_pred             cccchhhhhhhhhhhhhcccCcccceeeEEeccccceeeEecCCCeEEEeecc-cceeecccCCCcCCCcceeEEEEecc
Confidence            888888877652211111 1345678999999999999999999999988654 333333221    2367899999888


Q ss_pred             CeEEEeeCC
Q psy12697        375 TSFASCSTD  383 (602)
Q Consensus       375 ~~~~~~~~~  383 (602)
                      ..+++....
T Consensus       255 ~eflvvy~n  263 (1405)
T KOG3630|consen  255 QEFLVVYGN  263 (1405)
T ss_pred             eeEEEEecc
Confidence            777665443

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=95.12  E-value=3.4  Score=41.11  Aligned_cols=149  Identities=18%  Similarity=0.314  Sum_probs=84.6

Q ss_pred             cCCeEEEEEccCCCEEE-EEe--cCCcEEEEeCCCCceeEEeeeccCCeeeeeccCCC-----eEEEeeCCCeEEEEEcC
Q psy12697        321 KGPIFALKWNKRGNYIL-SAG--VDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNT-----SFASCSTDQHIHVCKLH  392 (602)
Q Consensus       321 ~~~i~~~~~~~~~~~l~-~~~--~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~i~i~d~~  392 (602)
                      -.++..++|. ||+.++ +.-  .+|.+++=|.   ..+    +.-..+..+.|.|-.     .+++.-....|.+|.+.
T Consensus        19 iHPvhGlaWT-DGkqVvLT~L~l~~gE~kfGds---~vi----GqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~   90 (671)
T PF15390_consen   19 IHPVHGLAWT-DGKQVVLTDLQLHNGEPKFGDS---KVI----GQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLC   90 (671)
T ss_pred             hccccceEec-CCCEEEEEeeeeeCCccccCCc---cEe----eccceeeeeeecCcccCCCCceEEEeccceEEEEEec
Confidence            3578899997 555544 322  2343333221   122    233467888898752     47888889999999985


Q ss_pred             C-----CceeeEeccCCC-----CeEEEEECCCCCEEEEEECCCeEEEEeCCCCeeeEeeccccccEEEEEECCCCCCCC
Q psy12697        393 S-----DKPVKSFEGHTN-----EVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHDLQAHNKEIYTIKWSPTGPETS  462 (602)
Q Consensus       393 ~-----~~~~~~~~~~~~-----~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~  462 (602)
                      .     .+.+..-..+-.     -.....|+|....|++-.....-.+++++.........-                  
T Consensus        91 ~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi------------------  152 (671)
T PF15390_consen   91 PSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADI------------------  152 (671)
T ss_pred             cCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEec------------------
Confidence            2     233322221111     134567999988888776655444555543221111110                  


Q ss_pred             CCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEE-eCCCeEEEEeCC
Q psy12697        463 NPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSA-GVDKTTIIWDAA  510 (602)
Q Consensus       463 ~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~~dg~i~iwd~~  510 (602)
                                     ...+-|.|.+|.+||+.|+.+ +..=.-+|||-.
T Consensus       153 ---------------~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~  186 (671)
T PF15390_consen  153 ---------------KTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSA  186 (671)
T ss_pred             ---------------cCCceEEEEEecCcCCEEEEEeCCeEEEEEecCc
Confidence                           134567777777788776654 334456888854

>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]

Probab=95.11  E-value=3.9  Score=40.54  Aligned_cols=275  Identities=11%  Similarity=0.031  Sum_probs=139.0

Q ss_pred             CCCceeEEeeCCCCCeEEEEeCCCeEEEEcCCCcceeeccccc-CCeEEEEEccCCCEEEEEecCCcEEEEeCCCCceeE
Q psy12697        279 SNKDVTSLDWNNNGSFLATGSYDGYARIWTSDGSLKSTLGQHK-GPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQ  357 (602)
Q Consensus       279 ~~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~  357 (602)
                      ...+|..+.+...|. +.+|+.+|..++=..+++....-.... .+|..+..+-.|+ |..|+.+| +.+.+.+..+...
T Consensus       163 ~d~~V~aLv~D~~g~-lWvgT~dGL~~fd~~~gkalql~s~~~dk~I~al~~d~qg~-LWVGTdqG-v~~~e~~G~~~sn  239 (671)
T COG3292         163 KDTPVVALVFDANGR-LWVGTPDGLSYFDAGRGKALQLASPPLDKAINALIADVQGR-LWVGTDQG-VYLQEAEGWRASN  239 (671)
T ss_pred             cCccceeeeeeccCc-EEEecCCcceEEccccceEEEcCCCcchhhHHHHHHHhcCc-EEEEeccc-eEEEchhhccccc
Confidence            357788888888874 667888886554444455444433332 5666666555554 66677665 7777766532222


Q ss_pred             Eee-eccCCeeeeeccCCCeEEEeeCCCeEEEEEcCCCceeeEeccC--CCCeEEEEECCCCCEEEEEECCCeEEEEeCC
Q psy12697        358 QFS-FHSAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEGH--TNEVNAIKWDPQGLLLASCSDDMTLKIWSLD  434 (602)
Q Consensus       358 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~--~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~  434 (602)
                      ... .....+..+.-...+.+-.|+.+|..+.---+.+-.....+.|  ...|.++..+.+|. |-+++.+|.+++-+-.
T Consensus       240 ~~~~lp~~~I~ll~qD~qG~lWiGTenGl~r~~l~rq~Lq~~~~~~~l~~S~vnsL~~D~dGs-LWv~t~~giv~~~~a~  318 (671)
T COG3292         240 WGPMLPSGNILLLVQDAQGELWIGTENGLWRTRLPRQGLQIPLSKMHLGVSTVNSLWLDTDGS-LWVGTYGGIVRYLTAD  318 (671)
T ss_pred             cCCCCcchheeeeecccCCCEEEeecccceeEecCCCCccccccccCCccccccceeeccCCC-EeeeccCceEEEecch
Confidence            111 1233344444444566777777765543333322222222222  23567777777775 5566666655554322


Q ss_pred             CCeeeEeecccccc-EEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCc
Q psy12697        435 KDNCVHDLQAHNKE-IYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQ  513 (602)
Q Consensus       435 ~~~~~~~~~~~~~~-i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~~~~~  513 (602)
                       ......+....+. +...+.+|                                .-.+..+--...-|.+.+-+-.+|.
T Consensus       319 -w~~ma~in~~dG~v~~~~~~a~--------------------------------~ll~~~v~~~ns~g~L~van~stG~  365 (671)
T COG3292         319 -WKRMAVINDSDGGVSQYEAVAP--------------------------------ALLSWGVRQLNSIGELMVANGSTGE  365 (671)
T ss_pred             -hhheeeeecCCCchhhhhccCc--------------------------------hhcccceeeccccceEEEecCCCCc
Confidence             1111111111000 00000000                                0001111111112233344444454


Q ss_pred             eeeeec-ccCCCeeEeeecCCceEEEeeCCCcEEEeecCC-CCceeeeecccccceEEEEecCCcEEEEEECCCCCeEEE
Q psy12697        514 CEQQFS-FHSAPALDVDWQSNTSFASCSTDQHIHVCKLHS-DKPVKSFEGHTTGQLVHSYKGTGGIFEVCWNSRGDKVGA  591 (602)
Q Consensus       514 ~~~~~~-~~~~~v~~~~~s~~~~l~~~~~d~~i~iw~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~  591 (602)
                      .+.... .....|+.+++..++.+=.++..+-+--|+.++ +.......+.          ..++|..+-=.||++ |..
T Consensus       366 ~v~sv~q~Rg~nit~~~~d~~g~lWlgs~q~GLsrl~n~n~~avlde~agl----------~ss~V~aived~dns-LWI  434 (671)
T COG3292         366 LVRSVHQLRGMNITTTLEDSRGRLWLGSMQNGLSRLDNKNEWAVLDEDAGL----------PSSEVSAIVEDPDNS-LWI  434 (671)
T ss_pred             EEEEeeeccccccchhhhccCCcEEEEecccchhhhccCCcccccccccCC----------cccceeeeeecCCCC-EEE
Confidence            443322 123457777777766666666665566677555 2221111111          146788888899998 888


Q ss_pred             eccCCeEEee
Q psy12697        592 SASDGSVFKN  601 (602)
Q Consensus       592 ~~~dg~v~i~  601 (602)
                      ++.+|.++.+
T Consensus       435 GTs~Glvk~~  444 (671)
T COG3292         435 GTSGGLVKRD  444 (671)
T ss_pred             eccCCeEecC
Confidence            9999988765

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=95.10  E-value=0.11  Score=31.23  Aligned_cols=32  Identities=31%  Similarity=0.428  Sum_probs=27.1

Q ss_pred             CceEEEEECCCC---CeEEEeeCCceEEEEecCCc
Q psy12697        141 EPVYSVAFSPDG---KFLASGSFDKCVHIWSARTG  172 (602)
Q Consensus       141 ~~V~~~~~s~d~---~~l~s~~~d~~v~iwd~~~~  172 (602)
                      ++|.++.|||+.   .+|+.+-.-+.|.|+|++++
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~   35 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN   35 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence            468999999844   59999988999999999863

It contains a characteristic DLL sequence motif.

>PHA03098 kelch-like protein; Provisional

Probab=95.08  E-value=0.98  Score=46.68  Aligned_cols=52  Identities=10%  Similarity=0.065  Sum_probs=26.3

Q ss_pred             cEEEEeCCCCceeEEeeec-cCCeeeeeccCCCeEEEeeCC-----CeEEEEEcCCCc
Q psy12697        344 TTIIWDAASGQCEQQFSFH-SAPALDVDWQSNTSFASCSTD-----QHIHVCKLHSDK  395 (602)
Q Consensus       344 ~i~~wd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-----~~i~i~d~~~~~  395 (602)
                      .+..||..+.+....-... ...-.+++...+..++.|+.+     ..+..||..+.+
T Consensus       312 ~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~  369 (534)
T PHA03098        312 SVVSYDTKTKSWNKVPELIYPRKNPGVTVFNNRIYVIGGIYNSISLNTVESWKPGESK  369 (534)
T ss_pred             cEEEEeCCCCeeeECCCCCcccccceEEEECCEEEEEeCCCCCEecceEEEEcCCCCc
Confidence            4667777766553221111 111122333345566777755     346778876654

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=95.03  E-value=3.8  Score=40.01  Aligned_cols=143  Identities=16%  Similarity=0.147  Sum_probs=86.3

Q ss_pred             CCCeEEEEeCCCeEEEEcCCCcc-----eeecccccCCeEEEEEcc----CCCEEEEEecCCcEEEEeCCCC--c-----
Q psy12697        291 NGSFLATGSYDGYARIWTSDGSL-----KSTLGQHKGPIFALKWNK----RGNYILSAGVDKTTIIWDAASG--Q-----  354 (602)
Q Consensus       291 ~~~~l~~~~~dg~i~i~~~~~~~-----~~~~~~~~~~i~~~~~~~----~~~~l~~~~~dg~i~~wd~~~~--~-----  354 (602)
                      +...+++|+..|.++||+.....     ...-..-..+|..+..-+    .....++.=.-..+.+|.+...  .     
T Consensus        36 ~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~~~~g~  115 (418)
T PF14727_consen   36 GSDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGTVEHGN  115 (418)
T ss_pred             CccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCCcccCc
Confidence            34689999999999999975322     111223456777776532    2223333445677888876321  1     


Q ss_pred             --eeEEeeecc--CCeeeeecc---C---CCeEEEeeCCCeEEEEEcCCCceeeEeccCCCCeEEEEECCCCCEEEEEEC
Q psy12697        355 --CEQQFSFHS--APALDVDWQ---S---NTSFASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSD  424 (602)
Q Consensus       355 --~~~~~~~~~--~~~~~~~~~---~---~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~  424 (602)
                        .+.....|.  .....+++-   .   ...+.+-+.||.+.+|+-+.......+.. .--...++|.+....|++++.
T Consensus       116 ~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~-~llPgPl~Y~~~tDsfvt~ss  194 (418)
T PF14727_consen  116 QYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD-FLLPGPLCYCPRTDSFVTASS  194 (418)
T ss_pred             EEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC-CCCCcCeEEeecCCEEEEecC
Confidence              111111121  112222221   1   24578889999999999776554444443 223445788888889999999


Q ss_pred             CCeEEEEeCC
Q psy12697        425 DMTLKIWSLD  434 (602)
Q Consensus       425 dg~i~iwd~~  434 (602)
                      +..+..|...
T Consensus       195 s~~l~~Yky~  204 (418)
T PF14727_consen  195 SWTLECYKYQ  204 (418)
T ss_pred             ceeEEEecHH
Confidence            9999988764

>KOG3616|consensus

Probab=94.97  E-value=5  Score=41.06  Aligned_cols=155  Identities=14%  Similarity=0.192  Sum_probs=83.7

Q ss_pred             CCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEeeCCCCCeEEEEeC
Q psy12697        221 HESEVFICAWNPVKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFLATGSY  300 (602)
Q Consensus       221 h~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~  300 (602)
                      ....++++.-+|.+..++.++.||.|+++++........-..                 ..+-..+.|...|  +++.+.
T Consensus        13 ~~e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~qski~~~-----------------~~p~~nlv~tnhg--l~~~ts   73 (1636)
T KOG3616|consen   13 EDEFTTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQSKICEE-----------------AKPKENLVFTNHG--LVTATS   73 (1636)
T ss_pred             ccceeeeeeecCCCceEEEEecCCcEEEEeecccchhhhhhh-----------------cCCccceeeeccc--eEEEec
Confidence            345577888899999999999999999999865543211111                 1122333444433  666777


Q ss_pred             CCeEEEEcCCCcceeeccc---ccCCeEEEEEccCCCEEEEEecC--------------------------CcEEEEeCC
Q psy12697        301 DGYARIWTSDGSLKSTLGQ---HKGPIFALKWNKRGNYILSAGVD--------------------------KTTIIWDAA  351 (602)
Q Consensus       301 dg~i~i~~~~~~~~~~~~~---~~~~i~~~~~~~~~~~l~~~~~d--------------------------g~i~~wd~~  351 (602)
                      |..+.-|..+|-..+.+.-   ......++...|..+.+ +|+.-                          ..|.+-|+.
T Consensus        74 drr~la~~~dgvvqqqfdyndqsekefss~~cdptaqnv-vgtlcggv~q~dcclrr~i~knkfe~tyv~pshvilkdls  152 (1636)
T KOG3616|consen   74 DRRALAWKEDGVVQQQFDYNDQSEKEFSSILCDPTAQNV-VGTLCGGVEQFDCCLRRGILKNKFELTYVAPSHVILKDLS  152 (1636)
T ss_pred             cchhheeeccCcchhhccccchhhhhccceecCchhhhh-hhhhccceeeehHHHHhHHHhccceeEEeccceeeeeccc
Confidence            7777778766644333321   11223333333332221 12222                          233344444


Q ss_pred             CCceeEEeeeccCCeeeeeccCCCeEEEeeCCCeEEEEEcCCCc
Q psy12697        352 SGQCEQQFSFHSAPALDVDWQSNTSFASCSTDQHIHVCKLHSDK  395 (602)
Q Consensus       352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~  395 (602)
                      ++..........-.+-.+......+++++....+|.+-|+.+.+
T Consensus       153 n~trt~l~s~~g~aidelkilgkdryli~~ts~siii~d~es~r  196 (1636)
T KOG3616|consen  153 NDTRTNLISHKGLAIDELKILGKDRYLIAHTSESIIIADLESNR  196 (1636)
T ss_pred             CCceEeeeecCCcchhhhhhccccceEEeeccccEEEeecccch
Confidence            44333333222223333334445667788888888888887643

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=94.95  E-value=0.66  Score=47.34  Aligned_cols=110  Identities=16%  Similarity=0.181  Sum_probs=68.1

Q ss_pred             CeEEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeeec-ccCCCeeEeee--cCCc-eEEEeeCCCcEEEeecCCCCcee
Q psy12697        482 PIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFS-FHSAPALDVDW--QSNT-SFASCSTDQHIHVCKLHSDKPVK  557 (602)
Q Consensus       482 ~v~~i~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~--s~~~-~l~~~~~d~~i~iw~~~~~~~~~  557 (602)
                      ...-+.-|.-++..++-+....+.|||...+.....-. ...+.|.++.|  .||+ .+++.|....|.+|.-....-..
T Consensus        31 ~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~  110 (631)
T PF12234_consen   31 NPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTN  110 (631)
T ss_pred             CcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhc
Confidence            33344444445554554555679999999887553333 35678999998  4778 88888999999998642111000


Q ss_pred             eeecccccceEEEEe----cCCcEEEEEECCCCCeEEEecc
Q psy12697        558 SFEGHTTGQLVHSYK----GTGGIFEVCWNSRGDKVGASAS  594 (602)
Q Consensus       558 ~~~~~~~~~~~~~~~----~~~~i~~l~~spdg~~l~~~~~  594 (602)
                         .......++.+.    ...+|.+..|.+||.+++.++.
T Consensus       111 ---~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sGN  148 (631)
T PF12234_consen  111 ---KGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSGN  148 (631)
T ss_pred             ---CCcccceeEEEEeecCCCCCccceeEecCCeEEEEeCC
Confidence               011122333322    1367899999999987665543

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=94.94  E-value=3.8  Score=39.54  Aligned_cols=197  Identities=13%  Similarity=0.192  Sum_probs=91.9

Q ss_pred             CCCEEEEee-CCCcEEEEeCCCCCCCCCccceEEEEE--EecCCCcccCCCCceeEEeeCCCCCeEEEEeC------CCe
Q psy12697        233 VKDFLASGS-GDSTARIWDMTDSTKKDPKELQIVLRH--CISKGGTEVPSNKDVTSLDWNNNGSFLATGSY------DGY  303 (602)
Q Consensus       233 ~~~~l~s~~-~dg~i~iw~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~------dg~  303 (602)
                      +.++|+..+ ..+.|.|.|+.+......  +......  ...+.+.     .....+..-|+|+.++++-.      -|-
T Consensus        86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~--l~KvIe~~ev~~k~g~-----s~PHT~Hclp~G~imIS~lGd~~G~g~Gg  158 (461)
T PF05694_consen   86 ERRYLILPGLRSSRIYVIDTKTDPRKPR--LHKVIEPEEVFEKTGL-----SRPHTVHCLPDGRIMISALGDADGNGPGG  158 (461)
T ss_dssp             -S-EEEEEBTTT--EEEEE--S-TTS-E--EEEEE-HHHHHHHH-E-----EEEEEEEE-SS--EEEEEEEETTS-S--E
T ss_pred             cCCcEEeeeeccCcEEEEECCCCCCCCc--eEeeeCHHHHHhhcCC-----CCCceeeecCCccEEEEeccCCCCCCCCc
Confidence            346777766 678899999986543221  1111110  0000111     11223344568877777532      245


Q ss_pred             EEEEcCCC-cceeecccc---cCCeEEEEEccCCCEEEEEec--------------------CCcEEEEeCCCCceeEEe
Q psy12697        304 ARIWTSDG-SLKSTLGQH---KGPIFALKWNKRGNYILSAGV--------------------DKTTIIWDAASGQCEQQF  359 (602)
Q Consensus       304 i~i~~~~~-~~~~~~~~~---~~~i~~~~~~~~~~~l~~~~~--------------------dg~i~~wd~~~~~~~~~~  359 (602)
                      +.++|-++ +........   ...-..+-|.|..+.++|...                    ..++.+||+.+.+.++.+
T Consensus       159 f~llD~~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~i  238 (461)
T PF05694_consen  159 FVLLDGETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTI  238 (461)
T ss_dssp             EEEE-TTT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEE
T ss_pred             EEEEcCccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEE
Confidence            77777663 333333322   223456778888888887652                    358999999999999999


Q ss_pred             eeccCC--eeeeeccCC--C--eEEEeeCCCeEEEEEc-CCCc----eeeEeccC-----------------CCCeEEEE
Q psy12697        360 SFHSAP--ALDVDWQSN--T--SFASCSTDQHIHVCKL-HSDK----PVKSFEGH-----------------TNEVNAIK  411 (602)
Q Consensus       360 ~~~~~~--~~~~~~~~~--~--~~~~~~~~~~i~i~d~-~~~~----~~~~~~~~-----------------~~~i~~~~  411 (602)
                      ......  ...+.|..+  .  -|+.+.-.++|..|-- ..++    .+..+...                 ..-|+.|.
T Consensus       239 dLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~  318 (461)
T PF05694_consen  239 DLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDIL  318 (461)
T ss_dssp             ES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EE
T ss_pred             ecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEE
Confidence            876543  455555443  2  2555556666665544 3332    12222111                 23478999


Q ss_pred             ECCCCCEEEEEE-CCCeEEEEeCCCC
Q psy12697        412 WDPQGLLLASCS-DDMTLKIWSLDKD  436 (602)
Q Consensus       412 ~~~~~~~l~~~~-~dg~i~iwd~~~~  436 (602)
                      +|.|.++|.... .+|.|+.||+...
T Consensus       319 iSlDDrfLYvs~W~~GdvrqYDISDP  344 (461)
T PF05694_consen  319 ISLDDRFLYVSNWLHGDVRQYDISDP  344 (461)
T ss_dssp             E-TTS-EEEEEETTTTEEEEEE-SST
T ss_pred             EccCCCEEEEEcccCCcEEEEecCCC
Confidence            999999987766 5899999999763

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>COG1520 FOG: WD40-like repeat [Function unknown]

Probab=94.82  E-value=4.3  Score=39.57  Aligned_cols=109  Identities=12%  Similarity=-0.000  Sum_probs=68.7

Q ss_pred             EEEEEecCCcEEEEeCCCCceeEEeeecc--CCeeeeeccCCCeEEEeeCCCeEEEEEcCCCceeeEeccCC-CCeEEEE
Q psy12697        335 YILSAGVDKTTIIWDAASGQCEQQFSFHS--APALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEGHT-NEVNAIK  411 (602)
Q Consensus       335 ~l~~~~~dg~i~~wd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~-~~i~~~~  411 (602)
                      .+..+..+|.+.-.|..+++.+.......  ..+..-....++.+++++.++.++.+|..+++.+....... ..+..-.
T Consensus        70 ~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~~~~~  149 (370)
T COG1520          70 TVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGKIYVGSWDGKLYALDASTGTLVWSRNVGGSPYYASPP  149 (370)
T ss_pred             eEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCeEEEecccceEEEEECCCCcEEEEEecCCCeEEecCc
Confidence            34455677778878888777654433321  22222222337889999999999999999998887777655 1122222


Q ss_pred             ECCCCCEEEEEECCCeEEEEeCCCCeeeEeecc
Q psy12697        412 WDPQGLLLASCSDDMTLKIWSLDKDNCVHDLQA  444 (602)
Q Consensus       412 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~  444 (602)
                      +-.++ .+..++.++.+...|..+++.......
T Consensus       150 v~~~~-~v~~~s~~g~~~al~~~tG~~~W~~~~  181 (370)
T COG1520         150 VVGDG-TVYVGTDDGHLYALNADTGTLKWTYET  181 (370)
T ss_pred             EEcCc-EEEEecCCCeEEEEEccCCcEEEEEec
Confidence            22243 344444778888888888887766543

>COG1520 FOG: WD40-like repeat [Function unknown]

Probab=94.77  E-value=4.4  Score=39.49  Aligned_cols=147  Identities=12%  Similarity=0.025  Sum_probs=82.0

Q ss_pred             eEEEEeCCCeEEEEcCCCccee-ecccc--cCCeEEEEEccCCCEEEEEecCCcEEEEeCCCCceeEEeeecc-CCeeee
Q psy12697        294 FLATGSYDGYARIWTSDGSLKS-TLGQH--KGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHS-APALDV  369 (602)
Q Consensus       294 ~l~~~~~dg~i~i~~~~~~~~~-~~~~~--~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~-~~~~~~  369 (602)
                      .+.++..+|.|.-.|.++.... .....  ...+..-.+..+|+ ++.++.++.+..+|.++|+......... ......
T Consensus        70 ~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~~~~  148 (370)
T COG1520          70 TVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGK-IYVGSWDGKLYALDASTGTLVWSRNVGGSPYYASP  148 (370)
T ss_pred             eEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCe-EEEecccceEEEEECCCCcEEEEEecCCCeEEecC
Confidence            3444466676666665543321 11111  11222222233665 7888889999999999999988877666 112222


Q ss_pred             eccCCCeEEEeeCCCeEEEEEcCCCceeeEeccCCC---CeEEEEECCCCCEEEEEEC--CCeEEEEeCCCCeeeEee
Q psy12697        370 DWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEGHTN---EVNAIKWDPQGLLLASCSD--DMTLKIWSLDKDNCVHDL  442 (602)
Q Consensus       370 ~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~---~i~~~~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~  442 (602)
                      ....++.+..++.++.+...+..+++..-.......   .+..-... ....+..+..  ++.+.-.|..++......
T Consensus       149 ~v~~~~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~-~~~~vy~~~~~~~~~~~a~~~~~G~~~w~~  225 (370)
T COG1520         149 PVVGDGTVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAI-ASGTVYVGSDGYDGILYALNAEDGTLKWSQ  225 (370)
T ss_pred             cEEcCcEEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCcee-ecceEEEecCCCcceEEEEEccCCcEeeee
Confidence            233456666666789999999998887655443221   11111111 2234444444  556666777777665553

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=94.67  E-value=1.5  Score=44.80  Aligned_cols=108  Identities=16%  Similarity=0.258  Sum_probs=72.4

Q ss_pred             eeEEeeCCCCCeEEEEeCCCeEEEEcCCCcceeecc--cccCCeEEEEEc--cCCCEEEEEecCCcEEEEeCC-------
Q psy12697        283 VTSLDWNNNGSFLATGSYDGYARIWTSDGSLKSTLG--QHKGPIFALKWN--KRGNYILSAGVDKTTIIWDAA-------  351 (602)
Q Consensus       283 i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~--~~~~~i~~~~~~--~~~~~l~~~~~dg~i~~wd~~-------  351 (602)
                      ++-+.-+.-++..++-.....+.|||..+.....-.  ...+.|.++.|.  |+++.+++.|....|.++--.       
T Consensus        32 ~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~  111 (631)
T PF12234_consen   32 PSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNK  111 (631)
T ss_pred             cceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcC
Confidence            344444455555555455568999998865433222  347789999985  789999999999999998532       


Q ss_pred             --CCceeEEee---eccCCeeeeeccCCCeEEEeeCCCeEEEEEc
Q psy12697        352 --SGQCEQQFS---FHSAPALDVDWQSNTSFASCSTDQHIHVCKL  391 (602)
Q Consensus       352 --~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~  391 (602)
                        +...++.+.   ....+|.+..|.+++.+++|+ ++.+.|+|-
T Consensus       112 ~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~s-GNqlfv~dk  155 (631)
T PF12234_consen  112 GPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGS-GNQLFVFDK  155 (631)
T ss_pred             CcccceeEEEEeecCCCCCccceeEecCCeEEEEe-CCEEEEECC
Confidence              112233332   233678999999999998887 456667663

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=94.45  E-value=5.2  Score=38.90  Aligned_cols=140  Identities=11%  Similarity=0.102  Sum_probs=76.7

Q ss_pred             CceeEEeeCCCCCeEEEEe-----------CCC-eEEEEcC-C--Cc--ceeecccccCCeEEEEEccCCCEEEEEecCC
Q psy12697        281 KDVTSLDWNNNGSFLATGS-----------YDG-YARIWTS-D--GS--LKSTLGQHKGPIFALKWNKRGNYILSAGVDK  343 (602)
Q Consensus       281 ~~i~~~~~~~~~~~l~~~~-----------~dg-~i~i~~~-~--~~--~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg  343 (602)
                      .....|+|.++|+++++-.           ..+ .|.+++- +  |.  ....+.........+++.+++  |++++...
T Consensus        14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G--lyV~~~~~   91 (367)
T TIGR02604        14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG--VYVATPPD   91 (367)
T ss_pred             CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC--EEEeCCCe
Confidence            4568899999999877753           223 6777753 2  32  223333334456889999888  44444443


Q ss_pred             cEEEEeCCCC-----ceeE---Eeeec----cCCeeeeeccCCCeEEEeeCC--------------------CeEEEEEc
Q psy12697        344 TTIIWDAASG-----QCEQ---QFSFH----SAPALDVDWQSNTSFASCSTD--------------------QHIHVCKL  391 (602)
Q Consensus       344 ~i~~wd~~~~-----~~~~---~~~~~----~~~~~~~~~~~~~~~~~~~~~--------------------~~i~i~d~  391 (602)
                      ..++.|....     +...   .+...    ......+.|.+++.|.++..+                    |.|.-++.
T Consensus        92 i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~p  171 (367)
T TIGR02604        92 ILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNP  171 (367)
T ss_pred             EEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEec
Confidence            3334344321     1111   12221    233667888888765543221                    34555555


Q ss_pred             CCCceeeEeccCCCCeEEEEECCCCCEEEEEE
Q psy12697        392 HSDKPVKSFEGHTNEVNAIKWDPQGLLLASCS  423 (602)
Q Consensus       392 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  423 (602)
                      ..++....-.+ ......++|+|+|+++++-.
T Consensus       172 dg~~~e~~a~G-~rnp~Gl~~d~~G~l~~tdn  202 (367)
T TIGR02604       172 DGGKLRVVAHG-FQNPYGHSVDSWGDVFFCDN  202 (367)
T ss_pred             CCCeEEEEecC-cCCCccceECCCCCEEEEcc
Confidence            54443222222 23356889999998876644

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=94.19  E-value=9  Score=40.63  Aligned_cols=88  Identities=16%  Similarity=0.152  Sum_probs=54.8

Q ss_pred             CcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCC-CCCCCc---cceEEE-EEEecCCCcccCCCCceeEEeeCCC---CC
Q psy12697        222 ESEVFICAWNPVKDFLASGSGDSTARIWDMTDS-TKKDPK---ELQIVL-RHCISKGGTEVPSNKDVTSLDWNNN---GS  293 (602)
Q Consensus       222 ~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~~~-~~~~~~---~~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~---~~  293 (602)
                      ...|..+..+|+|++|+..+..|. .|-.+... ......   ...... ................|..+.|+|.   +.
T Consensus        84 ~f~v~~i~~n~~g~~lal~G~~~v-~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~  162 (717)
T PF10168_consen   84 LFEVHQISLNPTGSLLALVGPRGV-VVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDS  162 (717)
T ss_pred             ceeEEEEEECCCCCEEEEEcCCcE-EEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCC
Confidence            457899999999999999888664 44444321 100000   011111 1111111112233567999999995   58


Q ss_pred             eEEEEeCCCeEEEEcCC
Q psy12697        294 FLATGSYDGYARIWTSD  310 (602)
Q Consensus       294 ~l~~~~~dg~i~i~~~~  310 (602)
                      .|++-+.|+.+++||+.
T Consensus       163 ~l~vLtsdn~lR~y~~~  179 (717)
T PF10168_consen  163 HLVVLTSDNTLRLYDIS  179 (717)
T ss_pred             eEEEEecCCEEEEEecC
Confidence            99999999999999975

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>KOG2377|consensus

Probab=94.01  E-value=1.2  Score=42.51  Aligned_cols=136  Identities=16%  Similarity=0.177  Sum_probs=85.3

Q ss_pred             EeeCCCCCeEEEEeCCCeEEEEcCCCc----ceeecccccCCeEEEEEccCCCEEEEEecCCcEEEEeCCCCceeE----
Q psy12697        286 LDWNNNGSFLATGSYDGYARIWTSDGS----LKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQ----  357 (602)
Q Consensus       286 ~~~~~~~~~l~~~~~dg~i~i~~~~~~----~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~----  357 (602)
                      +-|....+.+ .+...|.+.-|-..+.    ....-....++|.++.||+|.+.|++--.+.+|.+++....+...    
T Consensus        28 vFfDDaNkql-favrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~  106 (657)
T KOG2377|consen   28 VFFDDANKQL-FAVRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQ  106 (657)
T ss_pred             eeeccCcceE-EEEecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHH
Confidence            3343333333 3334444555554421    122222456799999999999999999999999999874332222    


Q ss_pred             EeeeccCCeeeeeccCCCeEEEeeCCCeEEEEEcCC-CceeeEeccCCCCeEEEEECCCCCEEEEEE
Q psy12697        358 QFSFHSAPALDVDWQSNTSFASCSTDQHIHVCKLHS-DKPVKSFEGHTNEVNAIKWDPQGLLLASCS  423 (602)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  423 (602)
                      ..+.....+....|..+..++.....| +.+|.... ...++..+.|.-.|.-..|.++.+.+..++
T Consensus       107 ~ck~k~~~IlGF~W~~s~e~A~i~~~G-~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~LL~t  172 (657)
T KOG2377|consen  107 ECKTKNANILGFCWTSSTEIAFITDQG-IEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVILLST  172 (657)
T ss_pred             HhccCcceeEEEEEecCeeEEEEecCC-eEEEEEchhhhhhhhhhhcccCccEEEEccccceEeeec
Confidence            223445568899999998777776655 34444332 234455566777888888988877654443

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=93.86  E-value=6.3  Score=37.63  Aligned_cols=66  Identities=12%  Similarity=0.104  Sum_probs=40.3

Q ss_pred             CCeEEEEEcc-------CCCEEEEEeCCCeEEEEeCCCCcee---ee-ecccCCCeeEeeecCCc-eEEEeeCCCcEE
Q psy12697        481 GPIFALKWNK-------RGNYILSAGVDKTTIIWDAASGQCE---QQ-FSFHSAPALDVDWQSNT-SFASCSTDQHIH  546 (602)
Q Consensus       481 ~~v~~i~~s~-------~~~~l~s~~~dg~i~iwd~~~~~~~---~~-~~~~~~~v~~~~~s~~~-~l~~~~~d~~i~  546 (602)
                      ..+..+.|-.       +|+++++.-..+.|....+..+..+   .. +......+..+++.||| ++++...+|.|+
T Consensus       253 ~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~Lyv~~d~~G~iy  330 (331)
T PF07995_consen  253 SAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGALYVSDDSDGKIY  330 (331)
T ss_dssp             --EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSEEEEEE-TTTTEE
T ss_pred             cccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCeEEEEECCCCeEe
Confidence            5566666653       4566776666778888887644322   12 22344479999999999 666666788764

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>PRK10115 protease 2; Provisional

Probab=93.70  E-value=11  Score=40.07  Aligned_cols=191  Identities=9%  Similarity=0.033  Sum_probs=97.6

Q ss_pred             cceEEEEEcCCCCEEEEeeC-----CCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEeeCCCCCeEEE
Q psy12697        223 SEVFICAWNPVKDFLASGSG-----DSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFLAT  297 (602)
Q Consensus       223 ~~v~~~~~~~~~~~l~s~~~-----dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~  297 (602)
                      -.+..+.|+|++++|+.+..     ...|++-|+.++...... +                 ...-..++|.+|++.|+.
T Consensus       127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~-i-----------------~~~~~~~~w~~D~~~~~y  188 (686)
T PRK10115        127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPEL-L-----------------DNVEPSFVWANDSWTFYY  188 (686)
T ss_pred             EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCcc-c-----------------cCcceEEEEeeCCCEEEE
Confidence            34667889999998887543     235778888766422110 0                 011145899999987766


Q ss_pred             EeCC------CeEEEEcCCCc---ceeecccccCCeE-EEEEccCCCEEEEEec---CCcEEEEeCC--CCceeEEeeec
Q psy12697        298 GSYD------GYARIWTSDGS---LKSTLGQHKGPIF-ALKWNKRGNYILSAGV---DKTTIIWDAA--SGQCEQQFSFH  362 (602)
Q Consensus       298 ~~~d------g~i~i~~~~~~---~~~~~~~~~~~i~-~~~~~~~~~~l~~~~~---dg~i~~wd~~--~~~~~~~~~~~  362 (602)
                      ...+      ..|..+++...   ....+........ ....+.++++++..+.   ++.+.+++..  ++.....+...
T Consensus       189 ~~~~~~~~~~~~v~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  268 (686)
T PRK10115        189 VRKHPVTLLPYQVWRHTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRR  268 (686)
T ss_pred             EEecCCCCCCCEEEEEECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECC
Confidence            6443      35666776533   2223332222233 3333448887764433   4578888843  33322222222


Q ss_pred             cCCeeeeeccCCCeEEEeeCC----CeEEEEEcCCCceeeEeccC-C-CCeEEEEECCCCCEEEEEECCCeEEEEeC
Q psy12697        363 SAPALDVDWQSNTSFASCSTD----QHIHVCKLHSDKPVKSFEGH-T-NEVNAIKWDPQGLLLASCSDDMTLKIWSL  433 (602)
Q Consensus       363 ~~~~~~~~~~~~~~~~~~~~~----~~i~i~d~~~~~~~~~~~~~-~-~~i~~~~~~~~~~~l~~~~~dg~i~iwd~  433 (602)
                      ......+. ..++.+...+..    ..|...++........+..+ . ..+..+.+. .+.++++...+|.-+++-+
T Consensus       269 ~~~~~~~~-~~~~~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~-~~~l~~~~~~~g~~~l~~~  343 (686)
T PRK10115        269 KDHEYSLD-HYQHRFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLF-TDWLVVEERQRGLTSLRQI  343 (686)
T ss_pred             CCCEEEEE-eCCCEEEEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEE-CCEEEEEEEeCCEEEEEEE
Confidence            22222222 223344333322    23444455422222333334 2 357778877 3356666666776555544

>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes

Probab=93.64  E-value=5  Score=35.83  Aligned_cols=87  Identities=11%  Similarity=0.153  Sum_probs=46.6

Q ss_pred             EEEccCCCEEEEEeCCC-eEEEEeCCCC-ceeeee--cc------cCCCeeEeeecCCc-eEEEeeCCCcEEEeecCCCC
Q psy12697        486 LKWNKRGNYILSAGVDK-TTIIWDAASG-QCEQQF--SF------HSAPALDVDWQSNT-SFASCSTDQHIHVCKLHSDK  554 (602)
Q Consensus       486 i~~s~~~~~l~s~~~dg-~i~iwd~~~~-~~~~~~--~~------~~~~v~~~~~s~~~-~l~~~~~d~~i~iw~~~~~~  554 (602)
                      ...-|||+.|+.|+.+. +..+|.-... .....+  ..      ...--.-+...||| .++.+..+  -.|||..+.+
T Consensus       123 ~~~L~DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~--s~i~d~~~n~  200 (243)
T PF07250_consen  123 ATTLPDGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRG--SIIYDYKTNT  200 (243)
T ss_pred             ceECCCCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCC--cEEEeCCCCe
Confidence            44456899999888764 3455554221 111111  10      11112345668999 55555544  4566888887


Q ss_pred             ceeeeecccccceEEEEecCCc
Q psy12697        555 PVKSFEGHTTGQLVHSYKGTGG  576 (602)
Q Consensus       555 ~~~~~~~~~~~~~~~~~~~~~~  576 (602)
                      .++.++....+  .+.++..+.
T Consensus       201 v~~~lP~lPg~--~R~YP~sgs  220 (243)
T PF07250_consen  201 VVRTLPDLPGG--PRNYPASGS  220 (243)
T ss_pred             EEeeCCCCCCC--ceecCCCcc
Confidence            77777654433  344444443

Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=93.59  E-value=5.2  Score=41.64  Aligned_cols=119  Identities=9%  Similarity=0.042  Sum_probs=71.7

Q ss_pred             CCCCEEEEeeCCCcEEEEeCCCCCCC---CCccceEEEEEEecCCCcccCCCCceeEEeeC--CCCCeEEEEeCCCeEEE
Q psy12697        232 PVKDFLASGSGDSTARIWDMTDSTKK---DPKELQIVLRHCISKGGTEVPSNKDVTSLDWN--NNGSFLATGSYDGYARI  306 (602)
Q Consensus       232 ~~~~~l~s~~~dg~i~iw~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~l~~~~~dg~i~i  306 (602)
                      -+...|+.|..||.|.+|.+++-...   .........................+..++++  ...++||+++....|.+
T Consensus       112 g~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTV  191 (717)
T PF08728_consen  112 GGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVSSNSQEVTV  191 (717)
T ss_pred             CCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEEecCCceEEE
Confidence            35578999999999999976321000   00000000000000000111124578999998  78889999999888888


Q ss_pred             EcCCC---ccee-ecccccCCeEEEEEccCC---C---EEEEEecCCcEEEEeC
Q psy12697        307 WTSDG---SLKS-TLGQHKGPIFALKWNKRG---N---YILSAGVDKTTIIWDA  350 (602)
Q Consensus       307 ~~~~~---~~~~-~~~~~~~~i~~~~~~~~~---~---~l~~~~~dg~i~~wd~  350 (602)
                      |-...   +... .-..+...|.+++|.++.   .   .+++++-.|.+.+|++
T Consensus       192 Faf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I  245 (717)
T PF08728_consen  192 FAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI  245 (717)
T ss_pred             EEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence            86432   1111 112366779999997644   2   6778889999999887

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>COG5290 IkappaB kinase complex, IKAP component [Transcription]

Probab=93.40  E-value=2.3  Score=43.67  Aligned_cols=194  Identities=14%  Similarity=0.261  Sum_probs=102.0

Q ss_pred             CcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCC----CCCCCccc---eEEEEEEecCCCcc-----------------c
Q psy12697        222 ESEVFICAWNPVKDFLASGSGDSTARIWDMTDS----TKKDPKEL---QIVLRHCISKGGTE-----------------V  277 (602)
Q Consensus       222 ~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~~~----~~~~~~~~---~~~~~~~~~~~~~~-----------------~  277 (602)
                      ...|...+|+.|.+.++....+..|.+++-.-.    ........   .......+.+....                 .
T Consensus       112 ~nGIvaa~wS~DE~~~cvvt~~r~il~~~k~fd~ise~~L~~~dl~ef~khi~VgWgkketqfrgk~~raqlrdptmp~~  191 (1243)
T COG5290         112 SNGIVAASWSADEKTWCVVTSTREILLFDKYFDPISEYHLKKSDLVEFGKHIRVGWGKKETQFRGKGARAQLRDPTMPYM  191 (1243)
T ss_pred             cCceEEEeeccCCceEEEEEcCceEEEEeccccccchhhcchhHHHHhccceEeeecccchhccccchhhhccCCCCccc
Confidence            567888999999998887777788877753211    00000000   00000000000000                 0


Q ss_pred             CCCC-------ceeEEeeCCCCCeEEEEeCC----CeEEEEcCCCcceeecccccCCeEEEEEccCCCEEEEEecCC---
Q psy12697        278 PSNK-------DVTSLDWNNNGSFLATGSYD----GYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDK---  343 (602)
Q Consensus       278 ~~~~-------~i~~~~~~~~~~~l~~~~~d----g~i~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg---  343 (602)
                      -..+       .-.-+.|-.|..+.+++...    ..+++|...|.+-..-....+.-..+.|-|+|..+++.+.||   
T Consensus       192 vD~G~l~avd~~k~~i~wrgD~~y~~v~r~Ee~prra~rvysreg~lds~sep~~g~e~~LSWkpqgS~~ati~td~~~~  271 (1243)
T COG5290         192 VDYGDLFAVDTNKKIIFWRGDTEYNLVGRSEERPRRAFRVYSREGQLDSASEPVTGMEHQLSWKPQGSKYATIGTDGCST  271 (1243)
T ss_pred             ccccceeEeeCCceEEEEccCcceeeecchhcccccceeeeccccccccccCCcccchhccccccCCceeeeeccCCCCC
Confidence            0011       12234555555555555432    245666655544433333344445689999999999887665   


Q ss_pred             --cEEEEeCCCCceeEEe---eeccCCeeeeeccCCCeEEEeeCCCeEEEEEcCCCceeeEeccCCCCeEEEEECCCC
Q psy12697        344 --TTIIWDAASGQCEQQF---SFHSAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQG  416 (602)
Q Consensus       344 --~i~~wd~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~  416 (602)
                        .|+++.- +|-.-..+   ..........+|.-...++.....+.+.+|-..+..--.+....-..+.-+.|+|..
T Consensus       272 S~~ViFfEr-NGLrHGef~lr~~~dEk~~~~~wn~~s~vlav~~~n~~~lwttkNyhWYLK~e~~ip~~s~vkwhpe~  348 (1243)
T COG5290         272 SESVIFFER-NGLRHGEFDLRVGCDEKAFLENWNLLSTVLAVAEGNLLKLWTTKNYHWYLKVERQIPGISYVKWHPEE  348 (1243)
T ss_pred             cceEEEEcc-CCcccCCccccCCchhhhhhhhhhHHHHHHHHhhcceEEEEEccceEEEEEEeecCCCcceeeecccc
Confidence              3444432 22111111   112223455666666666667778889999877765433333344456778888854

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=93.38  E-value=4.8  Score=34.75  Aligned_cols=34  Identities=15%  Similarity=0.100  Sum_probs=22.7

Q ss_pred             ccCCCCceeEEeeCCCCCeEEEEeCCCeEEEEcCC
Q psy12697        276 EVPSNKDVTSLDWNNNGSFLATGSYDGYARIWTSD  310 (602)
Q Consensus       276 ~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~  310 (602)
                      +.|....+.+++..|-..-|++|+. +.+.+|.+.
T Consensus       130 ElPl~~~p~ciaCC~~tG~LlVg~~-~~l~lf~l~  163 (215)
T PF14761_consen  130 ELPLSEPPLCIACCPVTGNLLVGCG-NKLVLFTLK  163 (215)
T ss_pred             EecCCCCCCEEEecCCCCCEEEEcC-CEEEEEEEE
Confidence            3455678899999985444555554 567888754

>KOG2727|consensus

Probab=93.30  E-value=0.13  Score=53.03  Aligned_cols=83  Identities=10%  Similarity=0.079  Sum_probs=60.6

Q ss_pred             EEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeeecccCCCeeEeeec----------C--Cc----eEEEeeCCCcEEE
Q psy12697        484 FALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQ----------S--NT----SFASCSTDQHIHV  547 (602)
Q Consensus       484 ~~i~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s----------~--~~----~l~~~~~d~~i~i  547 (602)
                      ..++.||+|++.|....=|.|.+-|+..+..++.++|..+.  ++.|-          |  +.    ..+.+-.-|.+-|
T Consensus       325 e~lslSP~gtlAAVTD~lgRVlLlDta~~ivvr~wKGYRDA--sc~fv~vkek~~~s~~~~sRvAlFLvIyAPRrgiLEV  402 (1244)
T KOG2727|consen  325 EKLSLSPSGTLAAVTDSLGRVLLLDTAALIVVRLWKGYRDA--SCVFVEVKEKKGKSEPVKSRVALFLVIYAPRRGILEV  402 (1244)
T ss_pred             ceeeeCCCccEEEEecccCcEEEEehhhhhHHHHhcccccc--eeEEEEcccccCCCccCcCceeEEEEEecccccHHHH
Confidence            46889999999999988899999999988888888775543  22221          1  12    2334556788999


Q ss_pred             eecCCCCceeeeecccccceE
Q psy12697        548 CKLHSDKPVKSFEGHTTGQLV  568 (602)
Q Consensus       548 w~~~~~~~~~~~~~~~~~~~~  568 (602)
                      |.+.+|-.+..+.....++++
T Consensus       403 W~~q~gpRV~AfnV~Ks~~Ll  423 (1244)
T KOG2727|consen  403 WQMQTGPRVLAFNVAKSSKLL  423 (1244)
T ss_pred             HHhccCCeEEEEecCCccccc
Confidence            999999888888766555443

>KOG1916|consensus

Probab=93.22  E-value=0.13  Score=52.86  Aligned_cols=135  Identities=15%  Similarity=0.148  Sum_probs=79.2

Q ss_pred             eeCCCcceEEEEEcCCC-CEEEEeeCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEeeCC---CCC
Q psy12697        218 LIGHESEVFICAWNPVK-DFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNN---NGS  293 (602)
Q Consensus       218 l~~h~~~v~~~~~~~~~-~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~~  293 (602)
                      ++|..+.|-.+.|.... ..+.  -.-|.+.+|+++--.....   ..+..+...      +...++.-+.|.|   +.-
T Consensus       128 ~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq---~~l~v~~~~------p~gs~~~~V~wcp~~~~~~  196 (1283)
T KOG1916|consen  128 AKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQ---PQLEVTPIT------PYGSDPQLVSWCPIAVNKV  196 (1283)
T ss_pred             HhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccc---cceEEeecC------cCCCCcceeeecccccccc
Confidence            34566677777774322 1222  2236788998865221111   111111111      2234445566655   566


Q ss_pred             eEEEEeCCCeEEEEcCCCcceeecccccCCeEEEE-----------EccCCCEEEEEecCCcEEEEeCC-----CCceeE
Q psy12697        294 FLATGSYDGYARIWTSDGSLKSTLGQHKGPIFALK-----------WNKRGNYILSAGVDKTTIIWDAA-----SGQCEQ  357 (602)
Q Consensus       294 ~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~i~~~~-----------~~~~~~~l~~~~~dg~i~~wd~~-----~~~~~~  357 (602)
                      ++..+-.++.+++...+......+..|...+..++           .+|||..++.++.||.++.|.+.     ..+|+.
T Consensus       197 ~ic~~~~~~~i~lL~~~ra~~~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclh  276 (1283)
T KOG1916|consen  197 YICYGLKGGEIRLLNINRALRSLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLH  276 (1283)
T ss_pred             eeeeccCCCceeEeeechHHHHHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeeeeeccccHhhhh
Confidence            77778888899888776555556666766655443           58899999999999998888653     223444


Q ss_pred             Eeeecc
Q psy12697        358 QFSFHS  363 (602)
Q Consensus       358 ~~~~~~  363 (602)
                      ....|+
T Consensus       277 ewkphd  282 (1283)
T KOG1916|consen  277 EWKPHD  282 (1283)
T ss_pred             ccCCCC
Confidence            455554

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=93.21  E-value=0.57  Score=41.31  Aligned_cols=65  Identities=12%  Similarity=0.158  Sum_probs=48.7

Q ss_pred             EccCCCEEEEEeCCCeEEEEeCCCCceeeee-------c-------ccCCCeeEeeecCCc-eEEEeeCCCcEEEeecCC
Q psy12697        488 WNKRGNYILSAGVDKTTIIWDAASGQCEQQF-------S-------FHSAPALDVDWQSNT-SFASCSTDQHIHVCKLHS  552 (602)
Q Consensus       488 ~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-------~-------~~~~~v~~~~~s~~~-~l~~~~~d~~i~iw~~~~  552 (602)
                      +..++++|++...+|.+++||+.+++.+..-       .       .....|..+.++.+| -+++ -.+|..+.|+.+-
T Consensus        18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~-lsng~~y~y~~~L   96 (219)
T PF07569_consen   18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVT-LSNGDSYSYSPDL   96 (219)
T ss_pred             EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEE-EeCCCEEEecccc
Confidence            5567889999999999999999988765322       1       244678889999999 5444 4567889998653


Q ss_pred             C
Q psy12697        553 D  553 (602)
Q Consensus       553 ~  553 (602)
                      +
T Consensus        97 ~   97 (219)
T PF07569_consen   97 G   97 (219)
T ss_pred             c
Confidence            3

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PHA02790 Kelch-like protein; Provisional

Probab=93.18  E-value=6.1  Score=40.06  Aligned_cols=101  Identities=9%  Similarity=-0.081  Sum_probs=46.2

Q ss_pred             CCEEEEEecC-----CcEEEEeCCCCceeEEeeeccCC-eeeeeccCCCeEEEeeCC--CeEEEEEcCCCceee--Eecc
Q psy12697        333 GNYILSAGVD-----KTTIIWDAASGQCEQQFSFHSAP-ALDVDWQSNTSFASCSTD--QHIHVCKLHSDKPVK--SFEG  402 (602)
Q Consensus       333 ~~~l~~~~~d-----g~i~~wd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~--~~i~i~d~~~~~~~~--~~~~  402 (602)
                      +..+++|+.+     ..+..||..+++....-...... -..++...+..+++|+.+  ..+..||..+++-..  .+..
T Consensus       272 ~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~  351 (480)
T PHA02790        272 EVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVPANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLK  351 (480)
T ss_pred             CEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEEECCEEEEECCcCCCCceEEEECCCCeEEECCCCCC
Confidence            3444555543     24667787766543322211111 122233445556777653  357778876543211  1111


Q ss_pred             CCCCeEEEEECCCCCEEEEEECCC---eEEEEeCCC
Q psy12697        403 HTNEVNAIKWDPQGLLLASCSDDM---TLKIWSLDK  435 (602)
Q Consensus       403 ~~~~i~~~~~~~~~~~l~~~~~dg---~i~iwd~~~  435 (602)
                      .......+  .-+|++.+.|+.++   .+..||.++
T Consensus       352 ~r~~~~~~--~~~g~IYviGG~~~~~~~ve~ydp~~  385 (480)
T PHA02790        352 PRCNPAVA--SINNVIYVIGGHSETDTTTEYLLPNH  385 (480)
T ss_pred             CCcccEEE--EECCEEEEecCcCCCCccEEEEeCCC
Confidence            11111112  22567777777543   244555443

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=93.18  E-value=0.53  Score=28.37  Aligned_cols=31  Identities=23%  Similarity=0.246  Sum_probs=25.8

Q ss_pred             CCeEEEEECCCC---CEEEEEECCCeEEEEeCCC
Q psy12697        405 NEVNAIKWDPQG---LLLASCSDDMTLKIWSLDK  435 (602)
Q Consensus       405 ~~i~~~~~~~~~---~~l~~~~~dg~i~iwd~~~  435 (602)
                      +.+.++.|+|+.   .+|+..-.-|.|.|+|+++
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence            358899999854   4888888889999999985

It contains a characteristic DLL sequence motif.

>PHA02790 Kelch-like protein; Provisional

Probab=93.17  E-value=3.8  Score=41.53  Aligned_cols=141  Identities=11%  Similarity=-0.060  Sum_probs=66.8

Q ss_pred             CCCeEEEEeCC--CeEEEEcCCCcceeecccccCCeEE-EEEccCCCEEEEEecCC---cEEEEeCCCCceeEEeeeccC
Q psy12697        291 NGSFLATGSYD--GYARIWTSDGSLKSTLGQHKGPIFA-LKWNKRGNYILSAGVDK---TTIIWDAASGQCEQQFSFHSA  364 (602)
Q Consensus       291 ~~~~l~~~~~d--g~i~i~~~~~~~~~~~~~~~~~i~~-~~~~~~~~~l~~~~~dg---~i~~wd~~~~~~~~~~~~~~~  364 (602)
                      ++...++|+.+  ..+..||...........-..+... ....-+|+..+.||.++   .+..||.++.+....-.....
T Consensus       318 ~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~  397 (480)
T PHA02790        318 NNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYP  397 (480)
T ss_pred             CCEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCcccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCc
Confidence            56677777754  3577777653332222221111111 11223566666766543   467788776654332111111


Q ss_pred             C-eeeeeccCCCeEEEeeCCCeEEEEEcCCCcee--eEeccCCCCeEEEEECCCCCEEEEEECC-----CeEEEEeCCCC
Q psy12697        365 P-ALDVDWQSNTSFASCSTDQHIHVCKLHSDKPV--KSFEGHTNEVNAIKWDPQGLLLASCSDD-----MTLKIWSLDKD  436 (602)
Q Consensus       365 ~-~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~--~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~  436 (602)
                      . -.+++...+..++.|   |.+.+||..+++-.  ..+.........+.  -++++.+.|+.+     ..+..||..+.
T Consensus       398 r~~~~~~~~~~~IYv~G---G~~e~ydp~~~~W~~~~~m~~~r~~~~~~v--~~~~IYviGG~~~~~~~~~ve~Yd~~~~  472 (480)
T PHA02790        398 HYKSCALVFGRRLFLVG---RNAEFYCESSNTWTLIDDPIYPRDNPELII--VDNKLLLIGGFYRGSYIDTIEVYNNRTY  472 (480)
T ss_pred             cccceEEEECCEEEEEC---CceEEecCCCCcEeEcCCCCCCccccEEEE--ECCEEEEECCcCCCcccceEEEEECCCC
Confidence            1 112222233344444   35677888765432  11211112222222  267788888754     34666766543

>PHA03098 kelch-like protein; Provisional

Probab=92.94  E-value=4.1  Score=42.12  Aligned_cols=143  Identities=8%  Similarity=0.040  Sum_probs=70.0

Q ss_pred             CCCeEEEEeCC-----CeEEEEcCCCcceeecccccCCe--EEEEEccCCCEEEEEecC------CcEEEEeCCCCceeE
Q psy12697        291 NGSFLATGSYD-----GYARIWTSDGSLKSTLGQHKGPI--FALKWNKRGNYILSAGVD------KTTIIWDAASGQCEQ  357 (602)
Q Consensus       291 ~~~~l~~~~~d-----g~i~i~~~~~~~~~~~~~~~~~i--~~~~~~~~~~~l~~~~~d------g~i~~wd~~~~~~~~  357 (602)
                      +++.++.|+.+     ..+..||..............+.  .+++ .-+++..+.||.+      ..+..||..+.+...
T Consensus       342 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~-~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~  420 (534)
T PHA03098        342 NNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNPCVV-NVNNLIYVIGGISKNDELLKTVECFSLNTNKWSK  420 (534)
T ss_pred             CCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccceEE-EECCEEEEECCcCCCCcccceEEEEeCCCCeeee
Confidence            56677778765     34677886644333222111111  1122 2345666666632      357888887765433


Q ss_pred             EeeeccC-CeeeeeccCCCeEEEeeCC--------CeEEEEEcCCCceeeE--eccCCCCeEEEEECCCCCEEEEEECC-
Q psy12697        358 QFSFHSA-PALDVDWQSNTSFASCSTD--------QHIHVCKLHSDKPVKS--FEGHTNEVNAIKWDPQGLLLASCSDD-  425 (602)
Q Consensus       358 ~~~~~~~-~~~~~~~~~~~~~~~~~~~--------~~i~i~d~~~~~~~~~--~~~~~~~i~~~~~~~~~~~l~~~~~d-  425 (602)
                      .-..... ...++....+..++.|+.+        ..+.+||..+.+-...  +.........+.+  ++++++.|+.+ 
T Consensus       421 ~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~  498 (534)
T PHA03098        421 GSPLPISHYGGCAIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCIF--NNKIYVVGGDKY  498 (534)
T ss_pred             cCCCCccccCceEEEECCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEEE--CCEEEEEcCCcC
Confidence            2111111 1112333344556666543        2378888876642211  1111111122222  66777777654 


Q ss_pred             ----CeEEEEeCCCC
Q psy12697        426 ----MTLKIWSLDKD  436 (602)
Q Consensus       426 ----g~i~iwd~~~~  436 (602)
                          +.+.+||..+.
T Consensus       499 ~~~~~~v~~yd~~~~  513 (534)
T PHA03098        499 EYYINEIEVYDDKTN  513 (534)
T ss_pred             CcccceeEEEeCCCC
Confidence                45777777654

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=92.78  E-value=2.1  Score=41.51  Aligned_cols=147  Identities=10%  Similarity=0.095  Sum_probs=83.2

Q ss_pred             CCCEEE-EEECCCeEEEEeCCCCeeeEeeccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCC
Q psy12697        415 QGLLLA-SCSDDMTLKIWSLDKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGN  493 (602)
Q Consensus       415 ~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~  493 (602)
                      +..+|. .|+....++-.|+..|+.+.....+...  -+.|.|.......                         . +.+
T Consensus       478 dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qm-------------------------t-~eq  529 (776)
T COG5167         478 DSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQM-------------------------T-DEQ  529 (776)
T ss_pred             CcceEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhc-------------------------C-ccc
Confidence            344443 3455566777788888888877766554  4555554331100                         0 122


Q ss_pred             EEEEEeCCCeEEEEeCC-CCceeeeec--c--cCCCeeEeeecCCceEEEeeCCCcEEEeecCCCCceeeeecccccceE
Q psy12697        494 YILSAGVDKTTIIWDAA-SGQCEQQFS--F--HSAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEGHTTGQLV  568 (602)
Q Consensus       494 ~l~s~~~dg~i~iwd~~-~~~~~~~~~--~--~~~~v~~~~~s~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~  568 (602)
                      .|+--+ +..|.-.|.+ .|..+....  .  ......+..-...|++|+++..|.|++||--.-+....+++.      
T Consensus       530 tlvGlS-~~svFrIDPR~~gNKi~v~esKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~rAKtalP~l------  602 (776)
T COG5167         530 TLVGLS-DYSVFRIDPRARGNKIKVVESKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRAKTALPGL------  602 (776)
T ss_pred             eEEeec-ccceEEecccccCCceeeeeehhccccccccccccccCceEEEecCCCceeeehhhcchhhhcCccc------
Confidence            344333 3334444443 232222111  0  112233444455679999999999999995433333333332      


Q ss_pred             EEEecCCcEEEEEECCCCCeEEEeccCCeEEee
Q psy12697        569 HSYKGTGGIFEVCWNSRGDKVGASASDGSVFKN  601 (602)
Q Consensus       569 ~~~~~~~~i~~l~~spdg~~l~~~~~dg~v~i~  601 (602)
                           ...|..+..+.+|+++++.+..-.+.++
T Consensus       603 -----G~aIk~idvta~Gk~ilaTCk~yllL~d  630 (776)
T COG5167         603 -----GDAIKHIDVTANGKHILATCKNYLLLTD  630 (776)
T ss_pred             -----ccceeeeEeecCCcEEEEeecceEEEEe
Confidence                 3568889999999999888877666554

>PRK13684 Ycf48-like protein; Provisional

Probab=92.75  E-value=9.4  Score=36.47  Aligned_cols=154  Identities=6%  Similarity=0.011  Sum_probs=86.4

Q ss_pred             cCCeeeeeccCCCeEEEeeCCCeEEEEEcCCCceeeEe-ccCCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeeeEe
Q psy12697        363 SAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSF-EGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHD  441 (602)
Q Consensus       363 ~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~  441 (602)
                      ...+..+...+++.++..+..|.+..-....++..... ..-...++++.+.++++.++++ ..|.+++=..+.+..-..
T Consensus       172 ~g~~~~i~~~~~g~~v~~g~~G~i~~s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~sW~~  250 (334)
T PRK13684        172 AGVVRNLRRSPDGKYVAVSSRGNFYSTWEPGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLESWSK  250 (334)
T ss_pred             cceEEEEEECCCCeEEEEeCCceEEEEcCCCCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCcccc
Confidence            44577788888888888888887764311222222222 2234578899999999877665 557654322333332221


Q ss_pred             eccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeeec--
Q psy12697        442 LQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFS--  519 (602)
Q Consensus       442 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~--  519 (602)
                      ...+                              .......+..+.+.+++..++ ++.+|.+. .....|+.-....  
T Consensus       251 ~~~~------------------------------~~~~~~~l~~v~~~~~~~~~~-~G~~G~v~-~S~d~G~tW~~~~~~  298 (334)
T PRK13684        251 PIIP------------------------------EITNGYGYLDLAYRTPGEIWA-GGGNGTLL-VSKDGGKTWEKDPVG  298 (334)
T ss_pred             ccCC------------------------------ccccccceeeEEEcCCCCEEE-EcCCCeEE-EeCCCCCCCeECCcC
Confidence            1100                              000112456677777776555 44567554 3444444333332  


Q ss_pred             -ccCCCeeEeeecCCceEEEeeCCCcEEEee
Q psy12697        520 -FHSAPALDVDWQSNTSFASCSTDQHIHVCK  549 (602)
Q Consensus       520 -~~~~~v~~~~~s~~~~l~~~~~d~~i~iw~  549 (602)
                       .-....+.+.|..++..+..+..|.|-.|+
T Consensus       299 ~~~~~~~~~~~~~~~~~~~~~G~~G~il~~~  329 (334)
T PRK13684        299 EEVPSNFYKIVFLDPEKGFVLGQRGVLLRYV  329 (334)
T ss_pred             CCCCcceEEEEEeCCCceEEECCCceEEEec
Confidence             122357778887767556677788887776

>KOG2247|consensus

Probab=92.64  E-value=0.022  Score=54.08  Aligned_cols=142  Identities=17%  Similarity=0.270  Sum_probs=98.6

Q ss_pred             eEEeeCCCCCeEEEEeCCCeEEEEcCCCcceeecccccCCeEEEEEccCCCEEE-EEecCCcEEEEeCCCCceeEEeeec
Q psy12697        284 TSLDWNNNGSFLATGSYDGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYIL-SAGVDKTTIIWDAASGQCEQQFSFH  362 (602)
Q Consensus       284 ~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~dg~i~~wd~~~~~~~~~~~~~  362 (602)
                      ....|-|.+.-++.++.+..+..||..++...... .++....++|..++..++ .+-..+.+.+||+.+....+.-...
T Consensus        38 i~~~w~~e~~nlavaca~tiv~~YD~agq~~le~n-~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqLE~gg  116 (615)
T KOG2247|consen   38 IIHRWRPEGHNLAVACANTIVIYYDKAGQVILELN-PTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQLESGG  116 (615)
T ss_pred             ceeeEecCCCceehhhhhhHHHhhhhhcceecccC-CchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHHhccC
Confidence            34567787777999999999999998877665543 344566788888877654 4566789999999765332211122


Q ss_pred             cCCeeeeeccCCCe-EEEeeCCCeEEEEEcCCCceeeEeccCCCCeEEEEECCCCCEEEEEECCCe
Q psy12697        363 SAPALDVDWQSNTS-FASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMT  427 (602)
Q Consensus       363 ~~~~~~~~~~~~~~-~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~  427 (602)
                      ...-.-..|++... ++.+...|.+.+++..+.+.+...-.|...++++++.+.+. .+.++.|..
T Consensus       117 ~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~-vil~dcd~~  181 (615)
T KOG2247|consen  117 TSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDY-VILCDCDNT  181 (615)
T ss_pred             cchHHHHhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEecccce-eeecCcHHH
Confidence            22222367777754 66777889999999988776666666889999999999774 444444443

>KOG4460|consensus

Probab=92.32  E-value=2.5  Score=41.20  Aligned_cols=96  Identities=13%  Similarity=0.178  Sum_probs=54.7

Q ss_pred             CeEEEEEccCCCEEEEEecCCcEEEEeCCCCceeEEeeeccCCeeeeeccCCCeEEEeeCCCeEEEEEcCCCceeeEecc
Q psy12697        323 PIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEG  402 (602)
Q Consensus       323 ~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~  402 (602)
                      .|..+..++.|..++-++.+|.+.++=.+..-.-..+......|.|-.+.-+..+++.+                     
T Consensus       105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss---------------------  163 (741)
T KOG4460|consen  105 EVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSS---------------------  163 (741)
T ss_pred             EEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccC---------------------
Confidence            46677888999999988889866654322221111222222223333322222222211                     


Q ss_pred             CCCCeEEEEECCCC---CEEEEEECCCeEEEEeCCCCeee
Q psy12697        403 HTNEVNAIKWDPQG---LLLASCSDDMTLKIWSLDKDNCV  439 (602)
Q Consensus       403 ~~~~i~~~~~~~~~---~~l~~~~~dg~i~iwd~~~~~~~  439 (602)
                      ..-.+..++|+|+.   ..|..-+.|..||+||+.....+
T Consensus       164 ~~ltl~Qa~WHP~S~~D~hL~iL~sdnviRiy~lS~~tel  203 (741)
T KOG4460|consen  164 TSLTLKQAAWHPSSILDPHLVLLTSDNVIRIYSLSEPTEL  203 (741)
T ss_pred             CceeeeeccccCCccCCceEEEEecCcEEEEEecCCcchh
Confidence            11235667888864   56777788899999998765444

>KOG1983|consensus

Probab=92.12  E-value=23  Score=39.43  Aligned_cols=74  Identities=15%  Similarity=0.103  Sum_probs=49.3

Q ss_pred             eeccCCeeeeeccCCCeEEEeeCCCeEEEEEcCCCceeeEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCee
Q psy12697        360 SFHSAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNC  438 (602)
Q Consensus       360 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~  438 (602)
                      ..+..++.+..+.....++.+...+.+.+|+.........+..     .....++++..++++..||.+..||...+..
T Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~v~~h~Dgs~~fWd~s~g~~  268 (993)
T KOG1983|consen  195 SLIEYESLQVLYYSPTKILIGFNRGLVVIKDRASKYVQSAYLP-----NGQLESRDGSHFVSYHTDGSYAFWDVSSGKL  268 (993)
T ss_pred             cccccccceeeeecCCCcceeeeeeeeeehhcccccchhhccc-----ccccCccCCceEEEEEecCCEEeeecCCCce
Confidence            3344455555555666667777777777777654433333322     1122278899999999999999999998765

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=92.09  E-value=0.92  Score=27.30  Aligned_cols=39  Identities=23%  Similarity=0.269  Sum_probs=28.4

Q ss_pred             CCCCeEEEee-CCceEEEEecCCceeEEEeeccCceEEEE
Q psy12697        150 PDGKFLASGS-FDKCVHIWSARTGQLVHSYKGTGGIFEVC  188 (602)
Q Consensus       150 ~d~~~l~s~~-~d~~v~iwd~~~~~~~~~~~~~~~~~~~~  188 (602)
                      |++++|.++. .+++|.++|..+++.+..+........++
T Consensus         1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg~~P~~i~   40 (42)
T TIGR02276         1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVGGYPFGVA   40 (42)
T ss_pred             CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECCCCCceEE
Confidence            5777666655 58999999999999888877644444443

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]

Probab=91.95  E-value=1.3  Score=42.22  Aligned_cols=157  Identities=16%  Similarity=0.091  Sum_probs=96.6

Q ss_pred             CCceeEEeeCCCCCeEEEEeCCCeEEEEcCCCcceeec---ccccC----CeE-EEEEccCCCEEEEEecCCcEEEE-eC
Q psy12697        280 NKDVTSLDWNNNGSFLATGSYDGYARIWTSDGSLKSTL---GQHKG----PIF-ALKWNKRGNYILSAGVDKTTIIW-DA  350 (602)
Q Consensus       280 ~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~---~~~~~----~i~-~~~~~~~~~~l~~~~~dg~i~~w-d~  350 (602)
                      ..++..+-..|||+.+.+-+. ..+.++++..+.....   ....+    .|+ .+.....|.-+++++.||-|.-| |+
T Consensus       220 ~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~vsQWFdv  298 (733)
T COG4590         220 FSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGLVSQWFDV  298 (733)
T ss_pred             ccchHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCceeeeeee
Confidence            356788889999999887765 6788887664332211   11111    122 12223356678889999999888 54


Q ss_pred             CCCc-----eeEEeeeccCCeeeeeccCC-CeEEEeeCCCeEEEEEcCCCceeeEeccCCCCeEEEEECCCCCEEEEEEC
Q psy12697        351 ASGQ-----CEQQFSFHSAPALDVDWQSN-TSFASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSD  424 (602)
Q Consensus       351 ~~~~-----~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~  424 (602)
                      +.+.     .++.++....++..+.-..+ .-|++-+.+|++.++.....+++..-. --..+.-+++||++.+|++-. 
T Consensus       299 r~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~~-~~~~~~~~~~Sp~~~~Ll~e~-  376 (733)
T COG4590         299 RRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFER-AYQAPQLVAMSPNQAYLLSED-  376 (733)
T ss_pred             ecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcceehhh-hhcCcceeeeCcccchheeec-
Confidence            4332     22233333333433332222 347888889999888766655443322 223577889999999998764 


Q ss_pred             CCeEEEEeCCCCeee
Q psy12697        425 DMTLKIWSLDKDNCV  439 (602)
Q Consensus       425 dg~i~iwd~~~~~~~  439 (602)
                      .|.++++.+++..+-
T Consensus       377 ~gki~~~~l~Nr~Pe  391 (733)
T COG4590         377 QGKIRLAQLENRNPE  391 (733)
T ss_pred             CCceEEEEecCCCCC
Confidence            477999998876543

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=91.93  E-value=5.9  Score=41.22  Aligned_cols=157  Identities=11%  Similarity=0.092  Sum_probs=88.4

Q ss_pred             CCEEEEeeCCCcEEEEeCCCCCCCCCcc--ceEEEEE----EecCCCcccCCCCceeEEeeCC--CCCeEEEEeCCCeEE
Q psy12697        234 KDFLASGSGDSTARIWDMTDSTKKDPKE--LQIVLRH----CISKGGTEVPSNKDVTSLDWNN--NGSFLATGSYDGYAR  305 (602)
Q Consensus       234 ~~~l~s~~~dg~i~iw~~~~~~~~~~~~--~~~~~~~----~~~~~~~~~~~~~~i~~~~~~~--~~~~l~~~~~dg~i~  305 (602)
                      .++++.+. .+.|.||+.+.........  .......    .........+....|+.|....  +...|+++..||.|.
T Consensus        49 ~n~LFiA~-~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~lg~~EVLl~c~DdG~V~  127 (717)
T PF08728_consen   49 RNLLFIAY-QSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGDLGGEEVLLLCTDDGDVL  127 (717)
T ss_pred             CCEEEEEE-CCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecccCCeeEEEEEecCCeEE
Confidence            55666655 6889999987654422110  0000000    0000111111233455554443  567899999999999


Q ss_pred             EEcCC--------C----cc-e-------eecccccCCeEEEEEc--cCCCEEEEEecCCcEEEEeCCCC--ceeE-Eee
Q psy12697        306 IWTSD--------G----SL-K-------STLGQHKGPIFALKWN--KRGNYILSAGVDKTTIIWDAASG--QCEQ-QFS  360 (602)
Q Consensus       306 i~~~~--------~----~~-~-------~~~~~~~~~i~~~~~~--~~~~~l~~~~~dg~i~~wd~~~~--~~~~-~~~  360 (602)
                      +|..+        .    .. .       ..........+++++.  ...++||+++....|.||-....  +... .-.
T Consensus       128 ~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~~r~~~~~s~  207 (717)
T PF08728_consen  128 AYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVDERFYHVPSH  207 (717)
T ss_pred             EEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEEecCCceEEEEEEecccccccccccc
Confidence            99632        0    00 0       0011123468889988  77788888888888888754331  1111 111


Q ss_pred             eccCCeeeeeccCCC-------eEEEeeCCCeEEEEEc
Q psy12697        361 FHSAPALDVDWQSNT-------SFASCSTDQHIHVCKL  391 (602)
Q Consensus       361 ~~~~~~~~~~~~~~~-------~~~~~~~~~~i~i~d~  391 (602)
                      .+...|.++.|.++.       .+++++-.|.+.+|++
T Consensus       208 ~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I  245 (717)
T PF08728_consen  208 QHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI  245 (717)
T ss_pred             ccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence            245567777776542       5777888999988877

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>KOG2247|consensus

Probab=91.76  E-value=0.075  Score=50.68  Aligned_cols=147  Identities=14%  Similarity=0.284  Sum_probs=106.9

Q ss_pred             eEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEeeCCCCCeEEE-EeCCCe
Q psy12697        225 VFICAWNPVKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFLAT-GSYDGY  303 (602)
Q Consensus       225 v~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~-~~~dg~  303 (602)
                      .....|-|.+.-++.++.+..+..||-........                  ...+....++|..++..+++ +-..+.
T Consensus        37 pi~~~w~~e~~nlavaca~tiv~~YD~agq~~le~------------------n~tg~aldm~wDkegdvlavlAek~~p   98 (615)
T KOG2247|consen   37 PIIHRWRPEGHNLAVACANTIVIYYDKAGQVILEL------------------NPTGKALDMAWDKEGDVLAVLAEKTGP   98 (615)
T ss_pred             cceeeEecCCCceehhhhhhHHHhhhhhcceeccc------------------CCchhHhhhhhccccchhhhhhhcCCC
Confidence            34557888887788888888888888654322111                  11355677888888776554 556789


Q ss_pred             EEEEcCCCcceeeccc---ccCCeEEEEEccCCCEEEEEecCCcEEEEeCCCCceeEEeeeccCCeeeeeccCCCeEEEe
Q psy12697        304 ARIWTSDGSLKSTLGQ---HKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTSFASC  380 (602)
Q Consensus       304 i~i~~~~~~~~~~~~~---~~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  380 (602)
                      +.+|++..+....+..   +...  -+.|++.+..++.+...|.+.+++..+.+.......|...+.+.+|.+.+..+.+
T Consensus        99 iylwd~n~eytqqLE~gg~~s~s--ll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~vil~  176 (615)
T KOG2247|consen   99 IYLWDVNSEYTQQLESGGTSSKS--LLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDYVILC  176 (615)
T ss_pred             eeechhhhhhHHHHhccCcchHH--HHhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEecccceeeec
Confidence            9999987554444432   2222  2789999999999999999999999888777766668889999999999999988


Q ss_pred             eCCCeEEEEEc
Q psy12697        381 STDQHIHVCKL  391 (602)
Q Consensus       381 ~~~~~i~i~d~  391 (602)
                      +.+..+.+-..
T Consensus       177 dcd~~L~v~~q  187 (615)
T KOG2247|consen  177 DCDNTLSVTTQ  187 (615)
T ss_pred             CcHHHHHHhhh
Confidence            88877655443

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=91.68  E-value=7.8  Score=33.11  Aligned_cols=105  Identities=10%  Similarity=0.033  Sum_probs=60.8

Q ss_pred             CCCEEEEEec--CCcEEEEeCCCCceeEEeeeccCCee--eeeccCCCeEEEeeCCCeEEEEEcCCCceeeEeccCCCCe
Q psy12697        332 RGNYILSAGV--DKTTIIWDAASGQCEQQFSFHSAPAL--DVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEGHTNEV  407 (602)
Q Consensus       332 ~~~~l~~~~~--dg~i~~wd~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i  407 (602)
                      +|.++.+.+.  ...|+.||+.+++.+.........+.  .+.-..+......-.+|.-..+|.++.+.+..+.- .+.=
T Consensus        55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~y-~GeG  133 (262)
T COG3823          55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFSY-EGEG  133 (262)
T ss_pred             CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhccccc-CCcc
Confidence            4555666654  34699999999988776654421111  11222233445555678888888887776655442 2222


Q ss_pred             EEEEECCCCCEEEEEECCCeEEEEeCCCCeee
Q psy12697        408 NAIKWDPQGLLLASCSDDMTLKIWSLDKDNCV  439 (602)
Q Consensus       408 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~  439 (602)
                      ..++  .|++.|+.++....++.-|.++....
T Consensus       134 WgLt--~d~~~LimsdGsatL~frdP~tfa~~  163 (262)
T COG3823         134 WGLT--SDDKNLIMSDGSATLQFRDPKTFAEL  163 (262)
T ss_pred             eeee--cCCcceEeeCCceEEEecCHHHhhhc
Confidence            3333  35556776666666777676654433

>KOG1983|consensus

Probab=91.32  E-value=11  Score=41.70  Aligned_cols=34  Identities=21%  Similarity=0.352  Sum_probs=28.2

Q ss_pred             CceeEEeeCCCCCeEEEEeCCCeEEEEcCCCcce
Q psy12697        281 KDVTSLDWNNNGSFLATGSYDGYARIWTSDGSLK  314 (602)
Q Consensus       281 ~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~  314 (602)
                      .....++|+|...++|.++..|.|+++-..+-..
T Consensus        36 ~~~~~~afD~~q~llai~t~tg~i~~yg~~~ve~   69 (993)
T KOG1983|consen   36 STPSALAFDPTQGLLAIGTRTGAIKIYGQPGVEF   69 (993)
T ss_pred             CCCcceeeccccceEEEEEecccEEEecccceEE
Confidence            4567789999999999999999999998665433

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=91.19  E-value=1.1  Score=39.42  Aligned_cols=81  Identities=15%  Similarity=0.194  Sum_probs=52.2

Q ss_pred             EcCCCCEEEEeeCCCcEEEEeCCCCCCCCCc-cceEEEEEEecCCCcccCCCCceeEEeeCCCCCeEEEEeCCCeEEEEc
Q psy12697        230 WNPVKDFLASGSGDSTARIWDMTDSTKKDPK-ELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFLATGSYDGYARIWT  308 (602)
Q Consensus       230 ~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~~  308 (602)
                      +..++++|++.+.+|.+++||+.+.+..... .+........ ....  .....|..+.++.+|.-+++- .+|..+.|+
T Consensus        18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~-~~~~--~~~~~i~~~~lt~~G~PiV~l-sng~~y~y~   93 (219)
T PF07569_consen   18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSP-VSDK--SSSPNITSCSLTSNGVPIVTL-SNGDSYSYS   93 (219)
T ss_pred             EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccc-cccC--CCCCcEEEEEEcCCCCEEEEE-eCCCEEEec
Confidence            4456889999999999999999987764332 1111111100 0000  345778999999888776665 457888888


Q ss_pred             CCCcce
Q psy12697        309 SDGSLK  314 (602)
Q Consensus       309 ~~~~~~  314 (602)
                      .+-..-
T Consensus        94 ~~L~~W   99 (219)
T PF07569_consen   94 PDLGCW   99 (219)
T ss_pred             ccccee
Confidence            764433

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=90.71  E-value=5.3  Score=38.99  Aligned_cols=141  Identities=10%  Similarity=0.115  Sum_probs=84.2

Q ss_pred             EEEeeCCCeEEEEEcCCCceeeEeccCCCCeEEEEECCCC--------CEEEEEECCCeEEEEeCCC-CeeeEeeccccc
Q psy12697        377 FASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQG--------LLLASCSDDMTLKIWSLDK-DNCVHDLQAHNK  447 (602)
Q Consensus       377 ~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~--------~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~  447 (602)
                      +..+.....++-.|+..|+.+..+..|..-  -+.|.|..        +.|+-- .+..|.-.|.+- +..+...+ ...
T Consensus       483 ~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGl-S~~svFrIDPR~~gNKi~v~e-sKd  558 (776)
T COG5167         483 YLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGL-SDYSVFRIDPRARGNKIKVVE-SKD  558 (776)
T ss_pred             EecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEee-cccceEEecccccCCceeeee-ehh
Confidence            445666778888999999999999888765  57777743        334444 444444445442 22222111 111


Q ss_pred             cEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeeecccCCCeeE
Q psy12697        448 EIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALD  527 (602)
Q Consensus       448 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~  527 (602)
                      ..+.-.|+.                             ..- -...|+|.++..|.|++||--..+....+.+-...|..
T Consensus       559 Y~tKn~Fss-----------------------------~~t-TesGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~  608 (776)
T COG5167         559 YKTKNKFSS-----------------------------GMT-TESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKH  608 (776)
T ss_pred             ccccccccc-----------------------------ccc-ccCceEEEecCCCceeeehhhcchhhhcCcccccceee
Confidence            111111111                             111 13358999999999999996654545566677788999


Q ss_pred             eeecCCceEEEeeCCCcEEEeecC
Q psy12697        528 VDWQSNTSFASCSTDQHIHVCKLH  551 (602)
Q Consensus       528 ~~~s~~~~l~~~~~d~~i~iw~~~  551 (602)
                      +..+.+|..+.+.....+.+-|+.
T Consensus       609 idvta~Gk~ilaTCk~yllL~d~~  632 (776)
T COG5167         609 IDVTANGKHILATCKNYLLLTDVP  632 (776)
T ss_pred             eEeecCCcEEEEeecceEEEEecc
Confidence            999999922223334566666664

>KOG1900|consensus

Probab=90.71  E-value=11  Score=41.53  Aligned_cols=137  Identities=11%  Similarity=0.143  Sum_probs=89.7

Q ss_pred             eCCCeEEEEcCCC-cceeecccccCCeEEEEE--------ccCCCEEEEEecCCcEEEEeCC----CCcee-----EEee
Q psy12697        299 SYDGYARIWTSDG-SLKSTLGQHKGPIFALKW--------NKRGNYILSAGVDKTTIIWDAA----SGQCE-----QQFS  360 (602)
Q Consensus       299 ~~dg~i~i~~~~~-~~~~~~~~~~~~i~~~~~--------~~~~~~l~~~~~dg~i~~wd~~----~~~~~-----~~~~  360 (602)
                      +.|+.+.+|+.+. .....+.+....|..+..        .|.=++++....--.|.++-+.    ++...     ..+.
T Consensus        96 TiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~  175 (1311)
T KOG1900|consen   96 TIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKIS  175 (1311)
T ss_pred             EeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceeee
Confidence            4678899999763 555566666666666553        2333555555555566665332    22111     2233


Q ss_pred             eccCCeeeeeccCCCeEEEeeCCCeEEEEEcC--CC---c-----------------eeeEec-cCCCCeEEEEECCCCC
Q psy12697        361 FHSAPALDVDWQSNTSFASCSTDQHIHVCKLH--SD---K-----------------PVKSFE-GHTNEVNAIKWDPQGL  417 (602)
Q Consensus       361 ~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~--~~---~-----------------~~~~~~-~~~~~i~~~~~~~~~~  417 (602)
                      .....+.++....+|+++.++.||.++-.-..  .+   +                 .+..+. .+.++|..++++....
T Consensus       176 ~dg~~V~~I~~t~nGRIF~~G~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~SR~  255 (1311)
T KOG1900|consen  176 VDGVSVNCITYTENGRIFFAGRDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNSRN  255 (1311)
T ss_pred             cCCceEEEEEeccCCcEEEeecCCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEeccccc
Confidence            44567888888889999999999965432221  11   0                 011223 4677999999999999


Q ss_pred             EEEEEECCCeEEEEeCCC
Q psy12697        418 LLASCSDDMTLKIWSLDK  435 (602)
Q Consensus       418 ~l~~~~~dg~i~iwd~~~  435 (602)
                      .+.+-+..|+|++||+..
T Consensus       256 IlY~lsek~~v~~Y~i~~  273 (1311)
T KOG1900|consen  256 ILYVLSEKGTVSAYDIGG  273 (1311)
T ss_pred             eeeeeccCceEEEEEccC
Confidence            999999999999999976

>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]

Probab=90.13  E-value=31  Score=37.32  Aligned_cols=77  Identities=10%  Similarity=0.038  Sum_probs=52.5

Q ss_pred             CCeeEeeecCCc-eEEEeeCCCcEEEeecCCCCceeee-ecccccceE-------EEEecCCcEEEEEECCCCCeEEEec
Q psy12697        523 APALDVDWQSNT-SFASCSTDQHIHVCKLHSDKPVKSF-EGHTTGQLV-------HSYKGTGGIFEVCWNSRGDKVGASA  593 (602)
Q Consensus       523 ~~v~~~~~s~~~-~l~~~~~d~~i~iw~~~~~~~~~~~-~~~~~~~~~-------~~~~~~~~i~~l~~spdg~~l~~~~  593 (602)
                      +.|.+++...-+ .++..-.||+|.++|-.+-+.+... ........+       ..++.-.++..++|||.+..++.-.
T Consensus       260 ~~V~si~~~~~~~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~~~~~v~s~~~~Gf~fp~~~~~~~vafSPt~c~~v~~~  339 (753)
T PF11635_consen  260 KRVVSITSPELDIVVAFAFSDGSIEFRDRNTMKELNETRTNGEPPNTVTSLFQAGFHFPCIQPPLHVAFSPTMCSLVQID  339 (753)
T ss_pred             CeEEEEEecccCcEEEEEEcCCeEEEEecCcchhhcccccccCCccccccccccccccccCCCCceEEECcccceEEEEe
Confidence            457777777667 8899999999999998887666554 111111111       1222223556789999999999999


Q ss_pred             cCCeEE
Q psy12697        594 SDGSVF  599 (602)
Q Consensus       594 ~dg~v~  599 (602)
                      .+|.+.
T Consensus       340 ~~~~~~  345 (753)
T PF11635_consen  340 EDGKTK  345 (753)
T ss_pred             cCCCce
Confidence            998744

It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.

>KOG1898|consensus

Probab=89.81  E-value=33  Score=37.19  Aligned_cols=36  Identities=28%  Similarity=0.212  Sum_probs=28.3

Q ss_pred             CCcceEEEEEcCCC------CEEEEeeCCCcEEEEeCCCCCC
Q psy12697        221 HESEVFICAWNPVK------DFLASGSGDSTARIWDMTDSTK  256 (602)
Q Consensus       221 h~~~v~~~~~~~~~------~~l~s~~~dg~i~iw~~~~~~~  256 (602)
                      -+..|.|+++.++.      ++++.++.|+++++..+.....
T Consensus       581 l~~~vac~ai~~~~~g~krsrfla~a~~d~~vriisL~p~d~  622 (1205)
T KOG1898|consen  581 LSTDVACLAIGQDPEGEKRSRFLALASVDNMVRIISLDPSDC  622 (1205)
T ss_pred             eceeehhhccCCCCcchhhcceeeeeccccceeEEEecCcce
Confidence            35668888888764      5799999999999999874443

>KOG2659|consensus

Probab=89.47  E-value=0.11  Score=44.60  Aligned_cols=36  Identities=31%  Similarity=0.469  Sum_probs=33.4

Q ss_pred             cccccchhhhhhhhhhhcCceeeeeccccccCCccC
Q psy12697          2 TYSSDEVNFLVYRYLQESGFQHSAYTFGIESHISQS   37 (602)
Q Consensus         2 ~~~s~e~n~li~ryL~e~g~~~~a~~~~~e~~~~~~   37 (602)
                      ++..+++|-||-.||.-.||.++|..|.+|+.+.++
T Consensus        23 ~~~~~d~n~LVmnylv~eg~~EaA~~Fa~e~~i~~~   58 (228)
T KOG2659|consen   23 SVMREDLNRLVMNYLVHEGYVEAAEKFAKESGIKPP   58 (228)
T ss_pred             CcchhhHHHHHHHHHHhccHHHHHHHhccccCCCCc
Confidence            467899999999999999999999999999999874

>KOG4460|consensus

Probab=89.45  E-value=5  Score=39.29  Aligned_cols=77  Identities=8%  Similarity=0.041  Sum_probs=48.6

Q ss_pred             CeeEeeecCCc-eEEEeeCCCcEEEee---------cCCCCceeeeecccccceEEEEecCCcEEEEEECCCC---CeEE
Q psy12697        524 PALDVDWQSNT-SFASCSTDQHIHVCK---------LHSDKPVKSFEGHTTGQLVHSYKGTGGIFEVCWNSRG---DKVG  590 (602)
Q Consensus       524 ~v~~~~~s~~~-~l~~~~~d~~i~iw~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg---~~l~  590 (602)
                      .|..+..++.| .++-.|.+|.+.++=         ++++++.-..+...-+..+.+-...-.+...+|+|+.   ..|.
T Consensus       105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL~  184 (741)
T KOG4460|consen  105 EVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHLV  184 (741)
T ss_pred             EEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceEE
Confidence            36677889999 888888888655532         1234443333332223333222223346788999986   6788


Q ss_pred             EeccCCeEEe
Q psy12697        591 ASASDGSVFK  600 (602)
Q Consensus       591 ~~~~dg~v~i  600 (602)
                      .-++|..++|
T Consensus       185 iL~sdnviRi  194 (741)
T KOG4460|consen  185 LLTSDNVIRI  194 (741)
T ss_pred             EEecCcEEEE
Confidence            8899998886

>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins

Probab=88.97  E-value=25  Score=35.64  Aligned_cols=144  Identities=15%  Similarity=0.075  Sum_probs=65.6

Q ss_pred             eeccCCCeEEEeeCCCeEEEEEcCCCceeeEeccCCCC---eEEEEECCCCCEEEEEEC-------------CCeEEEEe
Q psy12697        369 VDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEGHTNE---VNAIKWDPQGLLLASCSD-------------DMTLKIWS  432 (602)
Q Consensus       369 ~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~---i~~~~~~~~~~~l~~~~~-------------dg~i~iwd  432 (602)
                      +...+++.++.+.. ..+..+|+. |+.+.........   =..+...|+|++|+.+..             ...|..+|
T Consensus       153 ~~~l~nG~ll~~~~-~~~~e~D~~-G~v~~~~~l~~~~~~~HHD~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D~Ivevd  230 (477)
T PF05935_consen  153 FKQLPNGNLLIGSG-NRLYEIDLL-GKVIWEYDLPGGYYDFHHDIDELPNGNLLILASETKYVDEDKDVDTVEDVIVEVD  230 (477)
T ss_dssp             EEE-TTS-EEEEEB-TEEEEE-TT---EEEEEE--TTEE-B-S-EEE-TTS-EEEEEEETTEE-TS-EE---S-EEEEE-
T ss_pred             eeEcCCCCEEEecC-CceEEEcCC-CCEEEeeecCCcccccccccEECCCCCEEEEEeecccccCCCCccEecCEEEEEC
Confidence            55567787777666 778888875 4444433322211   235677899999998872             12356666


Q ss_pred             CCCCeeeEeeccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEcc-CCCEEEEEeCCCeEEEEeCCC
Q psy12697        433 LDKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNK-RGNYILSAGVDKTTIIWDAAS  511 (602)
Q Consensus       433 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~-~~~~l~s~~~dg~i~iwd~~~  511 (602)
                       .+|+.+..+.....-      .|....... ...............-..++++.+.+ ++.+++++-.-..|...|..+
T Consensus       231 -~tG~vv~~wd~~d~l------d~~~~~~~~-~~~~~~~~~~~~~~DW~H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t  302 (477)
T PF05935_consen  231 -PTGEVVWEWDFFDHL------DPYRDTVLK-PYPYGDISGSGGGRDWLHINSIDYDPSDDSIIVSSRHQSAVIKIDYRT  302 (477)
T ss_dssp             -TTS-EEEEEEGGGTS-------TT--TTGG-T--SSSSS-SSTTSBS--EEEEEEETTTTEEEEEETTT-EEEEEE-TT
T ss_pred             -CCCCEEEEEehHHhC------Ccccccccc-cccccccccCCCCCCccccCccEEeCCCCeEEEEcCcceEEEEEECCC
Confidence             677766654322110      000000000 00000000000011224578889988 555566655556899999888


Q ss_pred             CceeeeecccC
Q psy12697        512 GQCEQQFSFHS  522 (602)
Q Consensus       512 ~~~~~~~~~~~  522 (602)
                      ++....+-.+.
T Consensus       303 ~~i~Wilg~~~  313 (477)
T PF05935_consen  303 GKIKWILGPPG  313 (477)
T ss_dssp             S-EEEEES-ST
T ss_pred             CcEEEEeCCCC
Confidence            88877766543

Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=88.93  E-value=19  Score=33.11  Aligned_cols=218  Identities=15%  Similarity=0.190  Sum_probs=119.7

Q ss_pred             ceEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEeeCCCCC----------
Q psy12697        224 EVFICAWNPVKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGS----------  293 (602)
Q Consensus       224 ~v~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~----------  293 (602)
                      .-+.++++|.+.+-++....+...+||..........  +.+ ...+... .........+.+.|+....          
T Consensus        24 N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~--~~L-~vtiP~~-~~~~~~~~PTGiVfN~~~~F~vt~~g~~~   99 (336)
T TIGR03118        24 NAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQ--DPL-VVVIPAP-PPLAAEGTPTGQVFNGSDTFVVSGEGITG   99 (336)
T ss_pred             ccceeEecCCCCEEEecCCcceEEeecCCcccccCCc--cce-EEEecCC-CCCCCCCCccEEEEeCCCceEEcCCCccc
Confidence            4578999999988888888899999998733211111  001 1111100 0001123466666664322          


Q ss_pred             --eEEEEeCCCeEEEEcCCCc------ceeeccc-ccCC-eEEEEEcc--CCCEEEEEe-cCCcEEEEeCCCCceeEEee
Q psy12697        294 --FLATGSYDGYARIWTSDGS------LKSTLGQ-HKGP-IFALKWNK--RGNYILSAG-VDKTTIIWDAASGQCEQQFS  360 (602)
Q Consensus       294 --~l~~~~~dg~i~i~~~~~~------~~~~~~~-~~~~-i~~~~~~~--~~~~l~~~~-~dg~i~~wd~~~~~~~~~~~  360 (602)
                        .++.+++||+|.-|...-.      ....+.. .... -..+++-.  .+++|..+. ..++|.++|-.-.+.... .
T Consensus       100 ~a~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~-g  178 (336)
T TIGR03118       100 PSRFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLP-G  178 (336)
T ss_pred             ceeEEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCC-C
Confidence              3677889999999985311      1122221 1222 33455543  356666554 468888888543322110 0


Q ss_pred             eccCCeeeeeccC-------CCeE-------------EEeeCCCeEEEEEcCCCceeeEec--cCCCCeEEEEECC----
Q psy12697        361 FHSAPALDVDWQS-------NTSF-------------ASCSTDQHIHVCKLHSDKPVKSFE--GHTNEVNAIKWDP----  414 (602)
Q Consensus       361 ~~~~~~~~~~~~~-------~~~~-------------~~~~~~~~i~i~d~~~~~~~~~~~--~~~~~i~~~~~~~----  414 (602)
                      ....+-.-..|.|       +..+             +.+..-|.|-+||.. +..++.+.  +.-+....|+..|    
T Consensus       179 ~F~DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~-G~l~~r~as~g~LNaPWG~a~APa~FG  257 (336)
T TIGR03118       179 SFIDPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLN-GQLLRRVASSGRLNAPWGLAIAPESFG  257 (336)
T ss_pred             CccCCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCC-CcEEEEeccCCcccCCceeeeChhhhC
Confidence            0011101111111       1112             223334678888875 44455442  3334566777766    


Q ss_pred             --CCCEEEEEECCCeEEEEeCCCCeeeEeeccccc
Q psy12697        415 --QGLLLASCSDDMTLKIWSLDKDNCVHDLQAHNK  447 (602)
Q Consensus       415 --~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~  447 (602)
                        .+.+|+---.||+|..||..+++.+-.+....+
T Consensus       258 ~~sg~lLVGNFGDG~InaFD~~sG~~~g~L~~~~G  292 (336)
T TIGR03118       258 SLSGALLVGNFGDGTINAYDPQSGAQLGQLLDPDN  292 (336)
T ss_pred             CCCCCeEEeecCCceeEEecCCCCceeeeecCCCC
Confidence              567888777899999999999988877765443

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12

Probab=88.85  E-value=20  Score=33.35  Aligned_cols=172  Identities=11%  Similarity=0.113  Sum_probs=0.0

Q ss_pred             cEEEEeCCCCceeEEeee------ccCCeeeeeccC-------CCeEEEeeCCCeEEEEEcCCCceeeEecc--------
Q psy12697        344 TTIIWDAASGQCEQQFSF------HSAPALDVDWQS-------NTSFASCSTDQHIHVCKLHSDKPVKSFEG--------  402 (602)
Q Consensus       344 ~i~~wd~~~~~~~~~~~~------~~~~~~~~~~~~-------~~~~~~~~~~~~i~i~d~~~~~~~~~~~~--------  402 (602)
                      .|.+||+.+++.++.+..      .......+....       .-.+++=...+.|.++|+.+++..+.+..        
T Consensus        35 KLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~  114 (287)
T PF03022_consen   35 KLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDA  114 (287)
T ss_dssp             EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-SS
T ss_pred             EEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceeccc


Q ss_pred             -----------CCCCeEEEEECC---CCCEEEEEECCCeEEEEeCCCCeeeEeeccccc----cEEEEEECCCCCCCCCC
Q psy12697        403 -----------HTNEVNAIKWDP---QGLLLASCSDDMTLKIWSLDKDNCVHDLQAHNK----EIYTIKWSPTGPETSNP  464 (602)
Q Consensus       403 -----------~~~~i~~~~~~~---~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~----~i~~~~~~~~~~~~~~~  464 (602)
                                 ....+..++.+|   ++++|.-..-.+ -++|.+.+......-.....    .+..+.           
T Consensus       115 ~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss-~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG-----------  182 (287)
T PF03022_consen  115 GPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSS-RKLYRVPTSVLRDPSLSDAQALASQVQDLG-----------  182 (287)
T ss_dssp             EEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT--SEEEEEEHHHHCSTT--HHH-HHHT-EEEE-----------
T ss_pred             cceeccCceEecCCCccccccCCCCCCccEEEEEeCCC-CcEEEEEHHHhhCccccccccccccceecc-----------


Q ss_pred             CcceeeeeeeccCCccC-CeEEEEEccCCCEEEEEeCCCeEEEEeCCC-----Cceeeeeccc-CCCeeEeeecC--Cc-
Q psy12697        465 NMSLIFILKSTLGQHKG-PIFALKWNKRGNYILSAGVDKTTIIWDAAS-----GQCEQQFSFH-SAPALDVDWQS--NT-  534 (602)
Q Consensus       465 ~~~~~~~~~~~~~~~~~-~v~~i~~s~~~~~l~s~~~dg~i~iwd~~~-----~~~~~~~~~~-~~~v~~~~~s~--~~-  534 (602)
                                    .+. ....++++++|.++++--..+.|..|+..+     ...+-..... -..+.++.+.+  +| 
T Consensus       183 --------------~k~~~s~g~~~D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~  248 (287)
T PF03022_consen  183 --------------DKGSQSDGMAIDPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGY  248 (287)
T ss_dssp             --------------E---SECEEEEETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-
T ss_pred             --------------ccCCCCceEEECCCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCce


Q ss_pred             eEEEeeC
Q psy12697        535 SFASCST  541 (602)
Q Consensus       535 ~l~~~~~  541 (602)
                      ..+.+..
T Consensus       249 L~v~snr  255 (287)
T PF03022_consen  249 LWVLSNR  255 (287)
T ss_dssp             EEEEE-S
T ss_pred             EEEEECc

5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.

>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=88.83  E-value=2  Score=25.32  Aligned_cols=32  Identities=34%  Similarity=0.414  Sum_probs=20.8

Q ss_pred             eeccCCceEEEEECCCCCeEEEee-CC--ceEEEE
Q psy12697        136 LTRHTEPVYSVAFSPDGKFLASGS-FD--KCVHIW  167 (602)
Q Consensus       136 l~~h~~~V~~~~~s~d~~~l~s~~-~d--~~v~iw  167 (602)
                      +......-.+..|||||+.|+-++ .+  |.-.||
T Consensus         4 ~t~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy   38 (39)
T PF07676_consen    4 LTNSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY   38 (39)
T ss_dssp             ES-SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred             cccCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence            344555677889999999888765 34  555555

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=88.74  E-value=19  Score=33.03  Aligned_cols=239  Identities=8%  Similarity=0.058  Sum_probs=123.8

Q ss_pred             CeEEEEEccCCCEEEEEecCCcEEEEeCC------CC-ceeEEeee-----ccCCeeeeeccCC-------------CeE
Q psy12697        323 PIFALKWNKRGNYILSAGVDKTTIIWDAA------SG-QCEQQFSF-----HSAPALDVDWQSN-------------TSF  377 (602)
Q Consensus       323 ~i~~~~~~~~~~~l~~~~~dg~i~~wd~~------~~-~~~~~~~~-----~~~~~~~~~~~~~-------------~~~  377 (602)
                      .-+.|+++|.+.+-++....+...+||..      .. ..+-.+..     .....+.+.|...             ..|
T Consensus        24 N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~F  103 (336)
T TIGR03118        24 NAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRF  103 (336)
T ss_pred             ccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeE
Confidence            35689999999888888888899999986      11 12222221     1223445555421             347


Q ss_pred             EEeeCCCeEEEEEcCCCce-----eeEec-cCCCCe-EEEEECC--CCCEEEEE-ECCCeEEEEeCCCCeeeEeecc-cc
Q psy12697        378 ASCSTDQHIHVCKLHSDKP-----VKSFE-GHTNEV-NAIKWDP--QGLLLASC-SDDMTLKIWSLDKDNCVHDLQA-HN  446 (602)
Q Consensus       378 ~~~~~~~~i~i~d~~~~~~-----~~~~~-~~~~~i-~~~~~~~--~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~-~~  446 (602)
                      +.++++|+|.-|...-+..     ...+. .....| ..+++-.  .+.+|..+ -..++|.+||-.-.+ +. +.. ..
T Consensus       104 if~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~-~~-~~g~F~  181 (336)
T TIGR03118       104 LFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRP-PP-LPGSFI  181 (336)
T ss_pred             EEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCcccc-cc-CCCCcc
Confidence            8899999999998543222     11222 111222 3344443  24444443 456888888743221 11 000 00


Q ss_pred             ccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeeecc--cCCC
Q psy12697        447 KEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSF--HSAP  524 (602)
Q Consensus       447 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~--~~~~  524 (602)
                      .+-.-..|.|-+         ..      ..+..--|+-..-.++++.=+.|-.-|.|-+||+. |..++++..  .-..
T Consensus       182 DP~iPagyAPFn---------Iq------nig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~-G~l~~r~as~g~LNa  245 (336)
T TIGR03118       182 DPALPAGYAPFN---------VQ------NLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLN-GQLLRRVASSGRLNA  245 (336)
T ss_pred             CCCCCCCCCCcc---------eE------EECCeEEEEEEecCCcccccccCCCcceEEEEcCC-CcEEEEeccCCcccC
Confidence            000000000100         00      00000111111112233333444556789999976 888887742  2223


Q ss_pred             eeEeeecC------Cc-eEEEeeCCCcEEEeecCCCCceeeeecccccceEEEEecCCcEEEEEECC
Q psy12697        525 ALDVDWQS------NT-SFASCSTDQHIHVCKLHSDKPVKSFEGHTTGQLVHSYKGTGGIFEVCWNS  584 (602)
Q Consensus       525 v~~~~~s~------~~-~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp  584 (602)
                      -+.++..|      .+ .|+---.||+|..+|..+++-+..+... .+..+.    ...++.|+|-.
T Consensus       246 PWG~a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG~~~g~L~~~-~G~pi~----i~GLWgL~fGn  307 (336)
T TIGR03118       246 PWGLAIAPESFGSLSGALLVGNFGDGTINAYDPQSGAQLGQLLDP-DNHPVK----VDGLWSLTFGN  307 (336)
T ss_pred             CceeeeChhhhCCCCCCeEEeecCCceeEEecCCCCceeeeecCC-CCCeEE----ecCeEEeeeCC
Confidence            45566544      34 4444456999999999888877776653 333322    24578888865

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>PLN00033 photosystem II stability/assembly factor; Provisional

Probab=88.58  E-value=26  Score=34.33  Aligned_cols=146  Identities=10%  Similarity=0.067  Sum_probs=77.4

Q ss_pred             eeccCCCeEEEeeCCCeEEE-EEcCCCce-eeEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeeeE--eecc
Q psy12697        369 VDWQSNTSFASCSTDQHIHV-CKLHSDKP-VKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVH--DLQA  444 (602)
Q Consensus       369 ~~~~~~~~~~~~~~~~~i~i-~d~~~~~~-~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~--~~~~  444 (602)
                      +...+++.++..+..|.+.. ||-. ... ...-......++.+.+.+++.+++++ ..|.+. +....+..-.  .+..
T Consensus       244 v~~~~dG~~~~vg~~G~~~~s~d~G-~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g-~~G~l~-~S~d~G~~~~~~~f~~  320 (398)
T PLN00033        244 VNRSPDGDYVAVSSRGNFYLTWEPG-QPYWQPHNRASARRIQNMGWRADGGLWLLT-RGGGLY-VSKGTGLTEEDFDFEE  320 (398)
T ss_pred             EEEcCCCCEEEEECCccEEEecCCC-CcceEEecCCCccceeeeeEcCCCCEEEEe-CCceEE-EecCCCCcccccceee
Confidence            34456666666666665443 2221 111 11112234568899999999877766 556543 3333332110  1110


Q ss_pred             ccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeeec---cc
Q psy12697        445 HNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFS---FH  521 (602)
Q Consensus       445 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~---~~  521 (602)
                      ..                             .......+.++.|.+++..+++ +.+|.+.... ..|+.-....   .-
T Consensus       321 ~~-----------------------------~~~~~~~l~~v~~~~d~~~~a~-G~~G~v~~s~-D~G~tW~~~~~~~~~  369 (398)
T PLN00033        321 AD-----------------------------IKSRGFGILDVGYRSKKEAWAA-GGSGILLRST-DGGKSWKRDKGADNI  369 (398)
T ss_pred             cc-----------------------------cCCCCcceEEEEEcCCCcEEEE-ECCCcEEEeC-CCCcceeEccccCCC
Confidence            00                             0001234666777767665554 5677666554 4444322222   23


Q ss_pred             CCCeeEeeecCCceEEEeeCCCcEEEe
Q psy12697        522 SAPALDVDWQSNTSFASCSTDQHIHVC  548 (602)
Q Consensus       522 ~~~v~~~~~s~~~~l~~~~~d~~i~iw  548 (602)
                      ....+.+.|.+++.....+.+|.|.-|
T Consensus       370 ~~~ly~v~f~~~~~g~~~G~~G~il~~  396 (398)
T PLN00033        370 AANLYSVKFFDDKKGFVLGNDGVLLRY  396 (398)
T ss_pred             CcceeEEEEcCCCceEEEeCCcEEEEe
Confidence            456889999887766667778877655

>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins

Probab=88.32  E-value=24  Score=35.68  Aligned_cols=142  Identities=16%  Similarity=0.192  Sum_probs=68.1

Q ss_pred             CCCeEEEEcCCCcceeecccccCCeEEEEEccCCCEEEEEecCCcEEEEeCCCCceeEEeeeccCC---eeeeeccCCCe
Q psy12697        300 YDGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAP---ALDVDWQSNTS  376 (602)
Q Consensus       300 ~dg~i~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~---~~~~~~~~~~~  376 (602)
                      ..+...++|.+|.....+.........+...++|.+++...  ..+..+|+. |+.+..+......   -.++...|++.
T Consensus       126 ~~~~~~~iD~~G~Vrw~~~~~~~~~~~~~~l~nG~ll~~~~--~~~~e~D~~-G~v~~~~~l~~~~~~~HHD~~~l~nGn  202 (477)
T PF05935_consen  126 SSSYTYLIDNNGDVRWYLPLDSGSDNSFKQLPNGNLLIGSG--NRLYEIDLL-GKVIWEYDLPGGYYDFHHDIDELPNGN  202 (477)
T ss_dssp             BEEEEEEEETTS-EEEEE-GGGT--SSEEE-TTS-EEEEEB--TEEEEE-TT---EEEEEE--TTEE-B-S-EEE-TTS-
T ss_pred             CCceEEEECCCccEEEEEccCccccceeeEcCCCCEEEecC--CceEEEcCC-CCEEEeeecCCcccccccccEECCCCC
Confidence            45667777777776655543332222266778988776554  678888874 6666655544322   23444555543


Q ss_pred             -EEEeeC-------------CCeEEEEEcCCCceeeEecc--C-----------------------C--CCeEEEEECCC
Q psy12697        377 -FASCST-------------DQHIHVCKLHSDKPVKSFEG--H-----------------------T--NEVNAIKWDPQ  415 (602)
Q Consensus       377 -~~~~~~-------------~~~i~i~d~~~~~~~~~~~~--~-----------------------~--~~i~~~~~~~~  415 (602)
                       ++.+..             ...|..+| .+++.+..+..  |                       .  --++++.+.+.
T Consensus       203 ~L~l~~~~~~~~~~~~~~~~~D~Ivevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~~  281 (477)
T PF05935_consen  203 LLILASETKYVDEDKDVDTVEDVIVEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDPS  281 (477)
T ss_dssp             EEEEEEETTEE-TS-EE---S-EEEEE--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEETT
T ss_pred             EEEEEeecccccCCCCccEecCEEEEEC-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEeCC
Confidence             333331             12344444 45544333210  0                       0  12788999994


Q ss_pred             CCEEEEEEC-CCeEEEEeCCCCeeeEeeccc
Q psy12697        416 GLLLASCSD-DMTLKIWSLDKDNCVHDLQAH  445 (602)
Q Consensus       416 ~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~  445 (602)
                      ...|+..+. -..|...|.++++....+-.+
T Consensus       282 dd~iivSsR~~s~V~~Id~~t~~i~Wilg~~  312 (477)
T PF05935_consen  282 DDSIIVSSRHQSAVIKIDYRTGKIKWILGPP  312 (477)
T ss_dssp             TTEEEEEETTT-EEEEEE-TTS-EEEEES-S
T ss_pred             CCeEEEEcCcceEEEEEECCCCcEEEEeCCC
Confidence            444444444 458888898888877766544

Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.

>COG5290 IkappaB kinase complex, IKAP component [Transcription]

Probab=88.01  E-value=17  Score=37.88  Aligned_cols=93  Identities=16%  Similarity=0.210  Sum_probs=57.9

Q ss_pred             CceeEEeeCCCCCeEEEEeCCC-----eEEEEcCCCccee---ecccccCCeEEEEEccCCCEEEEEecCCcEEEEeCCC
Q psy12697        281 KDVTSLDWNNNGSFLATGSYDG-----YARIWTSDGSLKS---TLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAAS  352 (602)
Q Consensus       281 ~~i~~~~~~~~~~~l~~~~~dg-----~i~i~~~~~~~~~---~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~  352 (602)
                      +.-..+.|-|+|..+++-..||     .|.++..+|-..-   ...+....+..++|+-....++. ...+.+.+|-..+
T Consensus       247 g~e~~LSWkpqgS~~ati~td~~~~S~~ViFfErNGLrHGef~lr~~~dEk~~~~~wn~~s~vlav-~~~n~~~lwttkN  325 (1243)
T COG5290         247 GMEHQLSWKPQGSKYATIGTDGCSTSESVIFFERNGLRHGEFDLRVGCDEKAFLENWNLLSTVLAV-AEGNLLKLWTTKN  325 (1243)
T ss_pred             cchhccccccCCceeeeeccCCCCCcceEEEEccCCcccCCccccCCchhhhhhhhhhHHHHHHHH-hhcceEEEEEccc
Confidence            4445689999999999977554     4666765542211   11233445667777765554443 3456899998777


Q ss_pred             CceeEEeeeccCCeeeeeccCC
Q psy12697        353 GQCEQQFSFHSAPALDVDWQSN  374 (602)
Q Consensus       353 ~~~~~~~~~~~~~~~~~~~~~~  374 (602)
                      ..........-..+.-+.|.|.
T Consensus       326 yhWYLK~e~~ip~~s~vkwhpe  347 (1243)
T COG5290         326 YHWYLKVERQIPGISYVKWHPE  347 (1243)
T ss_pred             eEEEEEEeecCCCcceeeeccc
Confidence            6555444445555666777775

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=87.74  E-value=31  Score=34.31  Aligned_cols=164  Identities=10%  Similarity=0.080  Sum_probs=0.0

Q ss_pred             eeEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeeeEee-------ccccccEEEEEECCCC---CCCCCCCc
Q psy12697        397 VKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHDL-------QAHNKEIYTIKWSPTG---PETSNPNM  466 (602)
Q Consensus       397 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-------~~~~~~i~~~~~~~~~---~~~~~~~~  466 (602)
                      +..+...-.....|+|.|+|++|++--..|.|++++..++......       .........++++|+-   .       
T Consensus        22 ~~~va~GL~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~-------   94 (454)
T TIGR03606        22 KKVLLSGLNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEK-------   94 (454)
T ss_pred             EEEEECCCCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccC-------


Q ss_pred             ceeeeeeeccCCccCCeEEEEEccCCCEEEEEe----------CCCeEEEEeCC-----CCceeeeecccCCC----eeE
Q psy12697        467 SLIFILKSTLGQHKGPIFALKWNKRGNYILSAG----------VDKTTIIWDAA-----SGQCEQQFSFHSAP----ALD  527 (602)
Q Consensus       467 ~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~----------~dg~i~iwd~~-----~~~~~~~~~~~~~~----v~~  527 (602)
                                              ..++|....          ....|.-|.+.     -......+..-...    -..
T Consensus        95 ------------------------~n~~lYvsyt~~~~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~Ggr  150 (454)
T TIGR03606        95 ------------------------GNPYVYISYTYKNGDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGR  150 (454)
T ss_pred             ------------------------CCcEEEEEEeccCCCCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCce


Q ss_pred             eeecCCceEEEeeCCCcE-------------------------------EEeecCCCCceeeeecccccceEEEEec-CC
Q psy12697        528 VDWQSNTSFASCSTDQHI-------------------------------HVCKLHSDKPVKSFEGHTTGQLVHSYKG-TG  575 (602)
Q Consensus       528 ~~~s~~~~l~~~~~d~~i-------------------------------~iw~~~~~~~~~~~~~~~~~~~~~~~~~-~~  575 (602)
                      +.|.|||.|..+..|+.-                               +|+.+...-.+-.=.....+.....+.. ..
T Consensus       151 I~FgPDG~LYVs~GD~g~~~~~n~~~~~~aQ~~~~~~~~~~~d~~~~~GkILRin~DGsiP~dNPf~~g~~~eIyA~G~R  230 (454)
T TIGR03606       151 LVFGPDGKIYYTIGEQGRNQGANFFLPNQAQHTPTQQELNGKDYHAYMGKVLRLNLDGSIPKDNPSINGVVSHIFTYGHR  230 (454)
T ss_pred             EEECCCCcEEEEECCCCCCCcccccCcchhccccccccccccCcccCceEEEEEcCCCCCCCCCCccCCCcceEEEEecc


Q ss_pred             cEEEEEECCCCCeEEE
Q psy12697        576 GIFEVCWNSRGDKVGA  591 (602)
Q Consensus       576 ~i~~l~~spdg~~l~~  591 (602)
                      ....++|+|+|++.++
T Consensus       231 Np~Gla~dp~G~Lw~~  246 (454)
T TIGR03606       231 NPQGLAFTPDGTLYAS  246 (454)
T ss_pred             ccceeEECCCCCEEEE

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=87.21  E-value=3.2  Score=24.85  Aligned_cols=31  Identities=13%  Similarity=0.180  Sum_probs=23.5

Q ss_pred             cCCCEEEEEe-CCCeEEEEeCCCCceeeeecc
Q psy12697        490 KRGNYILSAG-VDKTTIIWDAASGQCEQQFSF  520 (602)
Q Consensus       490 ~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~  520 (602)
                      |++++|.++. .++.|.++|..+++.+..+..
T Consensus         1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~v   32 (42)
T TIGR02276         1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPV   32 (42)
T ss_pred             CCCCEEEEEeCCCCEEEEEECCCCeEEEEEEC
Confidence            4667666554 578999999998888877765

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []

Probab=86.78  E-value=52  Score=35.82  Aligned_cols=127  Identities=12%  Similarity=0.099  Sum_probs=74.8

Q ss_pred             CCeEEEEECC-CCCEEEEEECCCeEEEEeCCCCeeeEeeccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCe
Q psy12697        405 NEVNAIKWDP-QGLLLASCSDDMTLKIWSLDKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPI  483 (602)
Q Consensus       405 ~~i~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  483 (602)
                      .+...++|+| +.+.||+....|.-.||++........      ....+.-...|....             -......-
T Consensus       146 ~~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~------~~~~~~~~~~gsi~~-------------d~~e~s~w  206 (765)
T PF10214_consen  146 FPHADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKS------SNLRLSRNISGSIIF-------------DPEELSNW  206 (765)
T ss_pred             CccceEEeccCccceEEEEeccCcEEEEEeccccccCC------cceeeccCCCccccC-------------CCcccCcc
Confidence            3567899999 556899999999999999922111100      000011011110000             00012455


Q ss_pred             EEEEEccCCCEEEEEeCCCeEEEEeCCCCceee--eecccCCCeeEeeecCCc--eEEEeeCCCcEEEeecCC
Q psy12697        484 FALKWNKRGNYILSAGVDKTTIIWDAASGQCEQ--QFSFHSAPALDVDWQSNT--SFASCSTDQHIHVCKLHS  552 (602)
Q Consensus       484 ~~i~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~--~~~~~~~~v~~~~~s~~~--~l~~~~~d~~i~iw~~~~  552 (602)
                      ..+.|.++-+.|+.++. ..+.++|+++.....  ........|.++.-+|+.  +++.- ....|...++..
T Consensus       207 ~rI~W~~~~~~lLv~~r-~~l~~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiL-Ts~eiiw~~~~~  277 (765)
T PF10214_consen  207 KRILWVSDSNRLLVCNR-SKLMLIDFESNWQTEYLVTAKTWSWILDVKRSPDNPSHVFIL-TSKEIIWLDVKS  277 (765)
T ss_pred             eeeEecCCCCEEEEEcC-CceEEEECCCCCccchhccCCChhheeeEEecCCccceEEEE-ecCeEEEEEccC
Confidence            67888888888887754 558999998876533  112244578889888883  33322 235677777766

These proteins are found in fungi.

>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2

Probab=86.64  E-value=28  Score=32.68  Aligned_cols=60  Identities=10%  Similarity=0.034  Sum_probs=39.6

Q ss_pred             CCeEEEEeCCCeEEEEcCCCc-ceeecccccCCeEEEEEccCCCEEEEEe-cCCcEEEEeCCC
Q psy12697        292 GSFLATGSYDGYARIWTSDGS-LKSTLGQHKGPIFALKWNKRGNYILSAG-VDKTTIIWDAAS  352 (602)
Q Consensus       292 ~~~l~~~~~dg~i~i~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~~wd~~~  352 (602)
                      +++++.|+.+|...+. .++. .......+...|+++...+.-+.|++-+ ....++.+++..
T Consensus        13 ~~~lL~GTe~Gly~~~-~~~~~~~~~kl~~~~~v~q~~v~~~~~lLi~Lsgk~~~L~~~~L~~   74 (302)
T smart00036       13 GKWLLVGTEEGLYVLN-ISDQPGTLEKLIGRRSVTQIWVLEENNVLLMISGKKPQLYSHPLSA   74 (302)
T ss_pred             CcEEEEEeCCceEEEE-cccCCCCeEEecCcCceEEEEEEhhhCEEEEEeCCcceEEEEEHHH
Confidence            3689999999966555 4432 1112223466899999998888777655 333499998843

Unpublished observations.

>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins

Probab=85.61  E-value=41  Score=33.53  Aligned_cols=32  Identities=13%  Similarity=0.306  Sum_probs=25.5

Q ss_pred             cCCeEEEEEccCCCEEEEEeCCCeEEEEeCCC
Q psy12697        480 KGPIFALKWNKRGNYILSAGVDKTTIIWDAAS  511 (602)
Q Consensus       480 ~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~~~  511 (602)
                      +..|..++..+..+++++...+|.|.+|++..
T Consensus       189 ~~~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~  220 (422)
T PF08801_consen  189 RPKIVQVAVDPSRRLLYTLTSDGSIQVWDLGP  220 (422)
T ss_dssp             ---EEEEEEETTTTEEEEEESSE-EEEEEE-S
T ss_pred             hhceeeEEecCCcCEEEEEeCCCcEEEEEEeC
Confidence            44599999999989999999999999999974

RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=85.59  E-value=9.1  Score=32.38  Aligned_cols=31  Identities=26%  Similarity=0.506  Sum_probs=25.7

Q ss_pred             CCeEEEEECCCC------CEEEEEECCCeEEEEeCCC
Q psy12697        405 NEVNAIKWDPQG------LLLASCSDDMTLKIWSLDK  435 (602)
Q Consensus       405 ~~i~~~~~~~~~------~~l~~~~~dg~i~iwd~~~  435 (602)
                      ..+..++|||.|      -+|++.+.++.|.||....
T Consensus        86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~  122 (173)
T PF12657_consen   86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG  122 (173)
T ss_pred             ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence            368999999954      3789999999999998653

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>KOG1900|consensus

Probab=85.40  E-value=12  Score=41.32  Aligned_cols=192  Identities=15%  Similarity=0.126  Sum_probs=101.4

Q ss_pred             EEEcCCCcceeecccccCCeEEEEEcc-CCCEEEEEecCCcEEEEeCCCCceeEEeeeccCCeeeeecc---CC------
Q psy12697        305 RIWTSDGSLKSTLGQHKGPIFALKWNK-RGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQ---SN------  374 (602)
Q Consensus       305 ~i~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~---~~------  374 (602)
                      .+|.+.+..+..+. |...-..+-+-| -++.-++  .|+.+.+|+.+++.....+......|..+..-   |+      
T Consensus        63 ~v~~IP~el~eq~~-~~~~~~~mGiFpeI~RaWiT--iDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~I  139 (1311)
T KOG1900|consen   63 QVVNIPDELLEQFS-NIECKTDMGIFPEIGRAWIT--IDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEI  139 (1311)
T ss_pred             ccccCCHHHHHHhc-CcceeeeeccchhhcceEEE--eCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhh
Confidence            34666655555444 222223333333 3333333  47889999999987777777766666655432   22      


Q ss_pred             CeEEEeeCCCeEEEEEcCC----Cce-----eeEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeeeEeeccc
Q psy12697        375 TSFASCSTDQHIHVCKLHS----DKP-----VKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHDLQAH  445 (602)
Q Consensus       375 ~~~~~~~~~~~i~i~d~~~----~~~-----~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~  445 (602)
                      ..+++.+.--.|.++-+.-    +..     ..++....-.|+++....+|+.+++|-+ |  .+|.+.-...-.-+   
T Consensus       140 qhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~~dg~~V~~I~~t~nGRIF~~G~d-g--~lyEl~Yq~~~gWf---  213 (1311)
T KOG1900|consen  140 QHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKISVDGVSVNCITYTENGRIFFAGRD-G--NLYELVYQAEDGWF---  213 (1311)
T ss_pred             heeEEecccceEEEEEEEeccccCcccccccceeeecCCceEEEEEeccCCcEEEeecC-C--CEEEEEEeccCchh---
Confidence            2344444444555544321    111     0122223456888888888887776654 4  45544210000000   


Q ss_pred             cccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCCCeEEEEeCCC
Q psy12697        446 NKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAAS  511 (602)
Q Consensus       446 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~~~  511 (602)
                      ......+..+...  +    ...+..+......+..+|..++.....+.+.+-+..|+|.+||+..
T Consensus       214 ~~rc~Kiclt~s~--l----s~lvPs~~~~~~~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~  273 (1311)
T KOG1900|consen  214 GSRCRKICLTKSV--L----SSLVPSLLSVPGSSKDPIRQITIDNSRNILYVLSEKGTVSAYDIGG  273 (1311)
T ss_pred             hcccccccCchhH--H----HHhhhhhhcCCCCCCCcceeeEeccccceeeeeccCceEEEEEccC
Confidence            0000001100000  0    0000001111146788999999999999999999999999999976

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=85.06  E-value=36  Score=32.43  Aligned_cols=112  Identities=16%  Similarity=0.133  Sum_probs=62.2

Q ss_pred             ceEEEEEcCCCCEEEEeeCC------CcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEeeCCCCCeEEE
Q psy12697        224 EVFICAWNPVKDFLASGSGD------STARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFLAT  297 (602)
Q Consensus       224 ~v~~~~~~~~~~~l~s~~~d------g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~  297 (602)
                      ..-++++.+++.++++.-.+      ..|..++.. +........+...... .........+...-+|+++|+|+.|++
T Consensus        86 D~Egi~~~~~g~~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~-~~~~~~~~~N~G~E~la~~~dG~~l~~  163 (326)
T PF13449_consen   86 DPEGIAVPPDGSFWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPD-ANGTSGRRNNRGFEGLAVSPDGRTLFA  163 (326)
T ss_pred             ChhHeEEecCCCEEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccc-cCccccccCCCCeEEEEECCCCCEEEE
Confidence            44567777788888887777      778777765 4433222111111000 000033445788999999999997766


Q ss_pred             EeCCC--------------eEEEEc--CC--Ccc----eeeccc-----ccCCeEEEEEccCCCEEE
Q psy12697        298 GSYDG--------------YARIWT--SD--GSL----KSTLGQ-----HKGPIFALKWNKRGNYIL  337 (602)
Q Consensus       298 ~~~dg--------------~i~i~~--~~--~~~----~~~~~~-----~~~~i~~~~~~~~~~~l~  337 (602)
                      +.+..              .++++.  ..  +..    ...+..     ....|..+.+.+++++|+
T Consensus       164 ~~E~~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLv  230 (326)
T PF13449_consen  164 AMESPLKQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLV  230 (326)
T ss_pred             EECccccCCCcccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEE
Confidence            54422              144443  32  111    112222     345677888888877555

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=84.76  E-value=18  Score=28.64  Aligned_cols=119  Identities=11%  Similarity=0.062  Sum_probs=70.0

Q ss_pred             EEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEeeCC-----CCCeEEEEeCCC
Q psy12697        228 CAWNPVKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNN-----NGSFLATGSYDG  302 (602)
Q Consensus       228 ~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-----~~~~l~~~~~dg  302 (602)
                      -.|......|+.++.-|.|.|++..............         .....-+..|++++-.+     +...|+.|+. .
T Consensus         4 GkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~---------i~~LNin~~italaaG~l~~~~~~D~LliGt~-t   73 (136)
T PF14781_consen    4 GKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSD---------ISFLNINQEITALAAGRLKPDDGRDCLLIGTQ-T   73 (136)
T ss_pred             EEeCCCceeEEEEecCCEEEEECCCccccccccccCc---------eeEEECCCceEEEEEEecCCCCCcCEEEEecc-c
Confidence            4566666789999999999999887554322110000         00111246677776443     3456666665 5


Q ss_pred             eEEEEcCCCcceeecccccCCeEEEEEcc---CCCEEEEEecCCcEEEEeCCCCcee
Q psy12697        303 YARIWTSDGSLKSTLGQHKGPIFALKWNK---RGNYILSAGVDKTTIIWDAASGQCE  356 (602)
Q Consensus       303 ~i~i~~~~~~~~~~~~~~~~~i~~~~~~~---~~~~l~~~~~dg~i~~wd~~~~~~~  356 (602)
                      .+..||+....-...+.-...|.++.+-.   ...-++..+.+..|.-+|.+-.+..
T Consensus        74 ~llaYDV~~N~d~Fyke~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~f  130 (136)
T PF14781_consen   74 SLLAYDVENNSDLFYKEVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEIF  130 (136)
T ss_pred             eEEEEEcccCchhhhhhCccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEEE
Confidence            58889987665555555567788777632   1223444444667777776544443

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=84.71  E-value=3.4  Score=42.85  Aligned_cols=39  Identities=21%  Similarity=0.424  Sum_probs=28.8

Q ss_pred             cCCeEEEEEcc----CCCEEEEEeCCCeEEEEeCCCCceeeee
Q psy12697        480 KGPIFALKWNK----RGNYILSAGVDKTTIIWDAASGQCEQQF  518 (602)
Q Consensus       480 ~~~v~~i~~s~----~~~~l~s~~~dg~i~iwd~~~~~~~~~~  518 (602)
                      ......+++++    +..+|++.+.|+++++||+.+++++...
T Consensus       214 ~~~~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~~~~~~~  256 (547)
T PF11715_consen  214 SSVAASLAVSSSEINDDTFLFTLSRDHTLRIWSLETGQCLATI  256 (547)
T ss_dssp             ---EEEEEE-----ETTTEEEEEETTSEEEEEETTTTCEEEEE
T ss_pred             CCccceEEEecceeCCCCEEEEEeCCCeEEEEECCCCeEEEEe
Confidence            34455566666    7789999999999999999999996654

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins

Probab=84.39  E-value=7.5  Score=38.72  Aligned_cols=30  Identities=17%  Similarity=0.335  Sum_probs=24.9

Q ss_pred             CceeEEeeCCCCCeEEEEeCCCeEEEEcCC
Q psy12697        281 KDVTSLDWNNNGSFLATGSYDGYARIWTSD  310 (602)
Q Consensus       281 ~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~  310 (602)
                      ..|.+++..+..+.+++.+.+|.|.+|++.
T Consensus       190 ~~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~  219 (422)
T PF08801_consen  190 PKIVQVAVDPSRRLLYTLTSDGSIQVWDLG  219 (422)
T ss_dssp             --EEEEEEETTTTEEEEEESSE-EEEEEE-
T ss_pred             hceeeEEecCCcCEEEEEeCCCcEEEEEEe
Confidence            449999999988999999999999999985

RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=84.15  E-value=27  Score=30.30  Aligned_cols=55  Identities=11%  Similarity=0.145  Sum_probs=39.5

Q ss_pred             eccCCCeEEEeeCCCeEEEEEcC--CCceeeEeccCCCCeEEEEECCCCCEEEEEECC
Q psy12697        370 DWQSNTSFASCSTDQHIHVCKLH--SDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDD  425 (602)
Q Consensus       370 ~~~~~~~~~~~~~~~~i~i~d~~--~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d  425 (602)
                      +-.+.+.++++...+.|.+|++.  ..++...+.. -+.|..+.++..|++|++--.+
T Consensus        24 c~~g~d~Lfva~~g~~Vev~~l~~~~~~~~~~F~T-v~~V~~l~y~~~GDYlvTlE~k   80 (215)
T PF14761_consen   24 CCGGPDALFVAASGCKVEVYDLEQEECPLLCTFST-VGRVLQLVYSEAGDYLVTLEEK   80 (215)
T ss_pred             eccCCceEEEEcCCCEEEEEEcccCCCceeEEEcc-hhheeEEEeccccceEEEEEee
Confidence            33343455555778889999988  3345566653 3789999999999999997543

>KOG1898|consensus

Probab=84.05  E-value=70  Score=34.93  Aligned_cols=102  Identities=8%  Similarity=0.091  Sum_probs=56.4

Q ss_pred             EEccCCCEEEEEeCCCeEEEEeCCCCceeeeecc--cCCCeeEeeecCCceEEEeeCCCcEEEeecCCC-Cceeeeeccc
Q psy12697        487 KWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSF--HSAPALDVDWQSNTSFASCSTDQHIHVCKLHSD-KPVKSFEGHT  563 (602)
Q Consensus       487 ~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~--~~~~v~~~~~s~~~~l~~~~~d~~i~iw~~~~~-~~~~~~~~~~  563 (602)
                      +..|.+.++.+| ....+++||+...++++....  -...|+.+.+.-. ++++|.....|.++..+.. +.+..+....
T Consensus       940 Ai~~f~~~~Lag-vG~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt~~~-RI~VgD~qeSV~~~~y~~~~n~l~~fadD~ 1017 (1205)
T KOG1898|consen  940 AICPFQGRVLAG-VGRFLRLYDLGKKKLLRKCELKFIPNRISSIQTYGA-RIVVGDIQESVHFVRYRREDNQLIVFADDP 1017 (1205)
T ss_pred             EEeccCCEEEEe-cccEEEEeeCChHHHHhhhhhccCceEEEEEeecce-EEEEeeccceEEEEEEecCCCeEEEEeCCC
Confidence            445555555554 467799999998877755443  2445677776543 7888877777766554321 2222222111


Q ss_pred             ccceEEEEecCCcEEEEEECCCCCeEEEeccCCeEEe
Q psy12697        564 TGQLVHSYKGTGGIFEVCWNSRGDKVGASASDGSVFK  600 (602)
Q Consensus       564 ~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~v~i  600 (602)
                      .         +.-|+++.+- |-..+|.+..=|.+.+
T Consensus      1018 ~---------pR~Vt~~~~l-D~~tvagaDrfGNi~~ 1044 (1205)
T KOG1898|consen 1018 V---------PRHVTALELL-DYDTVAGADRFGNIAV 1044 (1205)
T ss_pred             c---------cceeeEEEEe-cCCceeeccccCcEEE
Confidence            0         1234444433 4455666666665543

>KOG3616|consensus

Probab=83.90  E-value=27  Score=36.10  Aligned_cols=77  Identities=19%  Similarity=0.352  Sum_probs=51.8

Q ss_pred             CCceeEEeeCCCCCeEEEEeCCCeEEEEcCCCcceeecccccCCeEEEEEccCCCEEEEEecCCcEEEEeCCCCceeEEe
Q psy12697        280 NKDVTSLDWNNNGSFLATGSYDGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQF  359 (602)
Q Consensus       280 ~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~  359 (602)
                      ...++++.-+|.|+.++.+..||.|.+|+........+-....+-..+.|...|  |++++.|..+.-|. ++|-..+++
T Consensus        14 ~e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~qski~~~~~p~~nlv~tnhg--l~~~tsdrr~la~~-~dgvvqqqf   90 (1636)
T KOG3616|consen   14 DEFTTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQSKICEEAKPKENLVFTNHG--LVTATSDRRALAWK-EDGVVQQQF   90 (1636)
T ss_pred             cceeeeeeecCCCceEEEEecCCcEEEEeecccchhhhhhhcCCccceeeeccc--eEEEeccchhheee-ccCcchhhc
Confidence            355788888999999999999999999996544333333334444556666444  67777788888785 334333333

>PF09398 FOP_dimer: FOP N terminal dimerisation domain; InterPro: IPR018993 Fibroblast growth factor receptor 1 (FGFR1) oncogene partner (FOP) is a centrosomal protein that is involved in anchoring microtubules to centrosomes

Probab=83.51  E-value=0.23  Score=34.99  Aligned_cols=29  Identities=24%  Similarity=0.308  Sum_probs=25.0

Q ss_pred             hhhhhhhhhhhcCceeeeeccccccCCcc
Q psy12697          8 VNFLVYRYLQESGFQHSAYTFGIESHISQ   36 (602)
Q Consensus         8 ~n~li~ryL~e~g~~~~a~~~~~e~~~~~   36 (602)
                      +|=||-.||+=.||.+|+.+|.-|++.+.
T Consensus        21 i~eLIrEyLef~~l~~TlsVf~~Es~~~~   49 (81)
T PF09398_consen   21 INELIREYLEFNNLDYTLSVFQPESGQPE   49 (81)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHT-TT
T ss_pred             HHHHHHHHHHHcCCccHHHHHhhccCCCC
Confidence            58899999999999999999999998764

This domain includes a Lis-homology motif. It forms an alpha-helical bundle and is involved in dimerisation []. ; GO: 0034453 microtubule anchoring, 0005813 centrosome; PDB: 2D68_A.

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=83.33  E-value=8.4  Score=32.57  Aligned_cols=31  Identities=6%  Similarity=0.272  Sum_probs=25.5

Q ss_pred             CCeEEEEEccCC------CEEEEEeCCCeEEEEeCCC
Q psy12697        481 GPIFALKWNKRG------NYILSAGVDKTTIIWDAAS  511 (602)
Q Consensus       481 ~~v~~i~~s~~~------~~l~s~~~dg~i~iwd~~~  511 (602)
                      ..+..++|||.|      -+|++...++.|.||....
T Consensus        86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~  122 (173)
T PF12657_consen   86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG  122 (173)
T ss_pred             ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence            489999999954      3688889999999998663

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]

Probab=83.30  E-value=73  Score=34.57  Aligned_cols=68  Identities=12%  Similarity=0.051  Sum_probs=51.3

Q ss_pred             ccCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeee----cc---------------cCCCeeEeeecCCc-eEEE
Q psy12697        479 HKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQF----SF---------------HSAPALDVDWQSNT-SFAS  538 (602)
Q Consensus       479 ~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~----~~---------------~~~~v~~~~~s~~~-~l~~  538 (602)
                      ..+.|.+++...-+.+++..-.||+|.++|-.+.+.+...    ..               .-.++..++|||.+ .++.
T Consensus       258 ~~~~V~si~~~~~~~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~~~~~v~s~~~~Gf~fp~~~~~~~vafSPt~c~~v~  337 (753)
T PF11635_consen  258 LNKRVVSITSPELDIVVAFAFSDGSIEFRDRNTMKELNETRTNGEPPNTVTSLFQAGFHFPCIQPPLHVAFSPTMCSLVQ  337 (753)
T ss_pred             cCCeEEEEEecccCcEEEEEEcCCeEEEEecCcchhhcccccccCCccccccccccccccccCCCCceEEECcccceEEE
Confidence            4567888888888889999999999999998877655433    10               11133457899999 8888


Q ss_pred             eeCCCcEE
Q psy12697        539 CSTDQHIH  546 (602)
Q Consensus       539 ~~~d~~i~  546 (602)
                      -..+|.+.
T Consensus       338 ~~~~~~~~  345 (753)
T PF11635_consen  338 IDEDGKTK  345 (753)
T ss_pred             EecCCCce
Confidence            88888865

It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.

>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast)

Probab=83.27  E-value=62  Score=33.74  Aligned_cols=168  Identities=14%  Similarity=0.159  Sum_probs=87.6

Q ss_pred             CcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEeeCCCCCeEEEEeC-
Q psy12697        222 ESEVFICAWNPVKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFLATGSY-  300 (602)
Q Consensus       222 ~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-  300 (602)
                      ...|..+.|.++++.+++.-.+|.|.+||...+..........  .+     ........-|..........++++.+. 
T Consensus       129 ~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~--~~-----~~~v~ys~fv~~~~~~~~~~~ll~v~~~  201 (670)
T PF10395_consen  129 DDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKL--KS-----SINVSYSKFVNDFELENGKDLLLTVSQL  201 (670)
T ss_pred             ccceEEEEEecCCCEEEEEEcCCcEEEEecccccccccccccc--cc-----ccceehhhhhcccccccCCceEEEEEEc
Confidence            6778999999999999999999999999994333221110000  00     000001111222222122334444443 


Q ss_pred             C---CeEEEEcC--CCcceeecc---cccCCeEEEEEcc-CCCEEEEEecCCcEEEEeCCCCceeEEeeec----c--CC
Q psy12697        301 D---GYARIWTS--DGSLKSTLG---QHKGPIFALKWNK-RGNYILSAGVDKTTIIWDAASGQCEQQFSFH----S--AP  365 (602)
Q Consensus       301 d---g~i~i~~~--~~~~~~~~~---~~~~~i~~~~~~~-~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~----~--~~  365 (602)
                      +   -..+++.+  +......+.   .+........|.- +|. |.-- .+++|.+|++...+..+++...    .  ..
T Consensus       202 ~~~k~~ykL~~l~~~~~~~~El~s~~~e~~~~~~s~f~Y~~G~-LY~l-~~~~i~~ysip~f~~~~tI~l~~ii~~~~~~  279 (670)
T PF10395_consen  202 SNSKLSYKLISLSNESSSIFELSSTILENFGLEDSKFCYQFGK-LYQL-SKKTISSYSIPNFQIQKTISLPSIIDKESDD  279 (670)
T ss_pred             CCCcEEEEEEEeccCCcceEEeehheeccCCcccceEEEeCCE-EEEE-eCCEEEEEEcCCceEEEEEEechhhcccccc
Confidence            2   24566666  333333332   1222223333333 343 3333 6779999999988877766543    1  12


Q ss_pred             eeeee-ccCCCeEEEeeCCCeEEEEEcCCCceeeEe
Q psy12697        366 ALDVD-WQSNTSFASCSTDQHIHVCKLHSDKPVKSF  400 (602)
Q Consensus       366 ~~~~~-~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~  400 (602)
                      +.++. .+++..++  +.++.|++.|+.-...+.++
T Consensus       280 ~vSl~~~s~nRvLL--s~~nkIyLld~~~~siLse~  313 (670)
T PF10395_consen  280 LVSLKPPSPNRVLL--SVNNKIYLLDLKFESILSEF  313 (670)
T ss_pred             ceEeecCCCCeEEE--EcCCEEEEEeehhhhhhhhh
Confidence            33333 33344343  34778999998655444433

It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=83.23  E-value=29  Score=29.87  Aligned_cols=174  Identities=10%  Similarity=0.038  Sum_probs=89.9

Q ss_pred             CCeEEEEEcCCCceeeEeccCCCCeEEEEECCCCCE-EEEEECCCeEEEEeCCCCeeeEeeccccccEEEEEECCCCCCC
Q psy12697        383 DQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLL-LASCSDDMTLKIWSLDKDNCVHDLQAHNKEIYTIKWSPTGPET  461 (602)
Q Consensus       383 ~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~-l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  461 (602)
                      ...|++||+.+++.+....-....+..=-...-|.. -...-.+|.-..+|.++.+++..+..... -..          
T Consensus        67 ~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~y~Ge-GWg----------  135 (262)
T COG3823          67 FSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFSYEGE-GWG----------  135 (262)
T ss_pred             cceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhcccccCCc-cee----------
Confidence            357999999998876554422111111111111222 22334678888888888777665543211 111          


Q ss_pred             CCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeeecc--cCCC---eeEeeecCCc-e
Q psy12697        462 SNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSF--HSAP---ALDVDWQSNT-S  535 (602)
Q Consensus       462 ~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~--~~~~---v~~~~~s~~~-~  535 (602)
                                                ...|++-|+.++...+++.-|.++.....+...  ...+   ++-+.|- || .
T Consensus       136 --------------------------Lt~d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-dG~l  188 (262)
T COG3823         136 --------------------------LTSDDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-DGEL  188 (262)
T ss_pred             --------------------------eecCCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee-ccEE
Confidence                                      112555577776667788778776554433321  1122   2334443 34 4


Q ss_pred             EEEeeCCCcEEEeecCCCCceeeeecccccceEEEEec-CCcEEEEEECCCCCeEEEecc
Q psy12697        536 FASCSTDQHIHVCKLHSDKPVKSFEGHTTGQLVHSYKG-TGGIFEVCWNSRGDKVGASAS  594 (602)
Q Consensus       536 l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~l~~spdg~~l~~~~~  594 (602)
                      +|-.=.+..|...+.++|+.+..++...--..+..-.. ..-...+++.|++..+...+.
T Consensus       189 yANVw~t~~I~rI~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTGK  248 (262)
T COG3823         189 YANVWQTTRIARIDPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITGK  248 (262)
T ss_pred             EEeeeeecceEEEcCCCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEecC
Confidence            55444555666667777776665543221111111111 234678999999866555543

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=82.53  E-value=7.1  Score=40.49  Aligned_cols=73  Identities=18%  Similarity=0.265  Sum_probs=45.2

Q ss_pred             CCCCeEEEEeCCCeEEEEcCCC-----cceee--cc--------------------cccCCeEEEEEcc----CCCEEEE
Q psy12697        290 NNGSFLATGSYDGYARIWTSDG-----SLKST--LG--------------------QHKGPIFALKWNK----RGNYILS  338 (602)
Q Consensus       290 ~~~~~l~~~~~dg~i~i~~~~~-----~~~~~--~~--------------------~~~~~i~~~~~~~----~~~~l~~  338 (602)
                      ++...++++..||.+.......     .....  +.                    ........++++.    +..++++
T Consensus       156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t  235 (547)
T PF11715_consen  156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT  235 (547)
T ss_dssp             -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred             cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence            4666888888898877766331     11100  00                    1123455666666    6789999


Q ss_pred             EecCCcEEEEeCCCCceeEEeeec
Q psy12697        339 AGVDKTTIIWDAASGQCEQQFSFH  362 (602)
Q Consensus       339 ~~~dg~i~~wd~~~~~~~~~~~~~  362 (602)
                      .+.|+.+++||+.+++++......
T Consensus       236 l~~D~~LRiW~l~t~~~~~~~~~~  259 (547)
T PF11715_consen  236 LSRDHTLRIWSLETGQCLATIDLL  259 (547)
T ss_dssp             EETTSEEEEEETTTTCEEEEEETT
T ss_pred             EeCCCeEEEEECCCCeEEEEeccc
Confidence            999999999999999997765443

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]

Probab=81.54  E-value=6.9  Score=37.57  Aligned_cols=171  Identities=18%  Similarity=0.073  Sum_probs=97.5

Q ss_pred             eeCCCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCcee-EEeeCCCCCeEE
Q psy12697        218 LIGHESEVFICAWNPVKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVT-SLDWNNNGSFLA  296 (602)
Q Consensus       218 l~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~l~  296 (602)
                      +..-...|..+-..||++.|..-+. ..+.++++.+.......-...      .++    .....|+ .+..-..|..+.
T Consensus       216 L~~~~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~d------spg----~~~~~Vte~l~lL~Gg~SLL  284 (733)
T COG4590         216 LSVPFSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDD------SPG----DSRHQVTEQLYLLSGGFSLL  284 (733)
T ss_pred             cCCCccchHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhc------CCC----chHHHHHHHHHHHhCceeEE
Confidence            4445667888889999998887766 678899887654322111000      000    0011222 222334566788


Q ss_pred             EEeCCCeEEEEc-CC--Cc----ceeecccccCCeEEEEEccCCCEEEEEecCCcEEEEeCCCCceeEEeeeccCCeeee
Q psy12697        297 TGSYDGYARIWT-SD--GS----LKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDV  369 (602)
Q Consensus       297 ~~~~dg~i~i~~-~~--~~----~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~  369 (602)
                      ++..||.|.-|= ..  +.    ....++-...++..+.-..+.+-+++-...|++.++.....+.+-.-.. -..+.-+
T Consensus       285 v~~~dG~vsQWFdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~~~-~~~~~~~  363 (733)
T COG4590         285 VVHEDGLVSQWFDVRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFERA-YQAPQLV  363 (733)
T ss_pred             EEcCCCceeeeeeeecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcceehhhh-hcCccee
Confidence            889999888873 22  11    1111122223333333333445566777778777776544433322221 2245567


Q ss_pred             eccCCCeEEEeeCCCeEEEEEcCCCceeeEe
Q psy12697        370 DWQSNTSFASCSTDQHIHVCKLHSDKPVKSF  400 (602)
Q Consensus       370 ~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~  400 (602)
                      +++|+...+..-..|.++++.+.+..+-.++
T Consensus       364 ~~Sp~~~~Ll~e~~gki~~~~l~Nr~Peisw  394 (733)
T COG4590         364 AMSPNQAYLLSEDQGKIRLAQLENRNPEISW  394 (733)
T ss_pred             eeCcccchheeecCCceEEEEecCCCCCccH
Confidence            7888888777788899999988876554433

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=81.35  E-value=51  Score=31.42  Aligned_cols=159  Identities=12%  Similarity=0.105  Sum_probs=89.3

Q ss_pred             CcceEEEEEcCCCCEEEEeeCCCc------EEEEeCCCCCCCCCccceEEEEEEec-CCCcc-cCCCCceeEEeeCCCCC
Q psy12697        222 ESEVFICAWNPVKDFLASGSGDST------ARIWDMTDSTKKDPKELQIVLRHCIS-KGGTE-VPSNKDVTSLDWNNNGS  293 (602)
Q Consensus       222 ~~~v~~~~~~~~~~~l~s~~~dg~------i~iw~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~i~~~~~~~~~~  293 (602)
                      -+.+..+.+.+++..+++.+.+|.      +...++..... ............+. ..+.. .......-+|++.++|.
T Consensus        19 ~GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~   97 (326)
T PF13449_consen   19 FGGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQG-GIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGS   97 (326)
T ss_pred             cCcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCC-CccceEeccceeccCCCCCcCCcCCCChhHeEEecCCC
Confidence            456788999977777777788777      65555544111 00011111111111 01111 11123566788877888


Q ss_pred             eEEEEeCC------CeEEEEcCCCcceeecc---------------cccCCeEEEEEccCCCEEEEEec-----CC--c-
Q psy12697        294 FLATGSYD------GYARIWTSDGSLKSTLG---------------QHKGPIFALKWNKRGNYILSAGV-----DK--T-  344 (602)
Q Consensus       294 ~l~~~~~d------g~i~i~~~~~~~~~~~~---------------~~~~~i~~~~~~~~~~~l~~~~~-----dg--~-  344 (602)
                      ++++.-.+      ..|..++.+|.....+.               .....+.+++++|+|+.|+++..     |+  . 
T Consensus        98 ~~is~E~~~~~~~~p~I~~~~~~G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~~  177 (326)
T PF13449_consen   98 FWISSEGGRTGGIPPRIRRFDLDGRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRAN  177 (326)
T ss_pred             EEEEeCCccCCCCCCEEEEECCCCcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCcccc
Confidence            77776666      78888887766543331               13456889999999997766542     22  1 


Q ss_pred             ------EEE--EeCCC-CceeEEe--ee-------ccCCeeeeeccCCCeEEEee
Q psy12697        345 ------TII--WDAAS-GQCEQQF--SF-------HSAPALDVDWQSNTSFASCS  381 (602)
Q Consensus       345 ------i~~--wd~~~-~~~~~~~--~~-------~~~~~~~~~~~~~~~~~~~~  381 (602)
                            +++  +|..+ ++....+  ..       ....+..+.+.+++.|++--
T Consensus       178 ~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLE  232 (326)
T PF13449_consen  178 PDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLE  232 (326)
T ss_pred             cccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEE
Confidence                  444  45544 3233322  22       23567778888887766543

>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes

Probab=80.39  E-value=44  Score=30.04  Aligned_cols=149  Identities=9%  Similarity=0.066  Sum_probs=72.1

Q ss_pred             EEEEeCCCCceeEEeeeccCCeeeeeccCCCeEEEeeCC----CeEEEEEcCCCc---eeeEec---cCCCCeEEEEECC
Q psy12697        345 TIIWDAASGQCEQQFSFHSAPALDVDWQSNTSFASCSTD----QHIHVCKLHSDK---PVKSFE---GHTNEVNAIKWDP  414 (602)
Q Consensus       345 i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~i~i~d~~~~~---~~~~~~---~~~~~i~~~~~~~  414 (602)
                      -.+||+.+++..........-...-.+.+++.++..+.+    ..+++++.....   ......   .....-.+...-|
T Consensus        48 s~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L~  127 (243)
T PF07250_consen   48 SVEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTLP  127 (243)
T ss_pred             EEEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceECC
Confidence            468888887654322222222333455667665544332    347777754411   111100   1112233455567


Q ss_pred             CCCEEEEEECCCe-EEEEeCCCCeeeEeeccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCC
Q psy12697        415 QGLLLASCSDDMT-LKIWSLDKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGN  493 (602)
Q Consensus       415 ~~~~l~~~~~dg~-i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~  493 (602)
                      ||+.|+.|+.+.- ..+|.-...         ......+.+...-.                ......---.+...|+|+
T Consensus       128 DG~vlIvGG~~~~t~E~~P~~~~---------~~~~~~~~~l~~~~----------------~~~~~nlYP~~~llPdG~  182 (243)
T PF07250_consen  128 DGRVLIVGGSNNPTYEFWPPKGP---------GPGPVTLPFLSQTS----------------DTLPNNLYPFVHLLPDGN  182 (243)
T ss_pred             CCCEEEEeCcCCCcccccCCccC---------CCCceeeecchhhh----------------ccCccccCceEEEcCCCC
Confidence            9999999988731 222222110         00111111111000                000112223466788999


Q ss_pred             EEEEEeCCCeEEEEeCCCCceeeeecc
Q psy12697        494 YILSAGVDKTTIIWDAASGQCEQQFSF  520 (602)
Q Consensus       494 ~l~s~~~dg~i~iwd~~~~~~~~~~~~  520 (602)
                      +++.+..+  -.|||..+.+.+..+..
T Consensus       183 lFi~an~~--s~i~d~~~n~v~~~lP~  207 (243)
T PF07250_consen  183 LFIFANRG--SIIYDYKTNTVVRTLPD  207 (243)
T ss_pred             EEEEEcCC--cEEEeCCCCeEEeeCCC
Confidence            99988765  45678888776666553

Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].

>PLN00033 photosystem II stability/assembly factor; Provisional

Probab=80.27  E-value=62  Score=31.76  Aligned_cols=107  Identities=14%  Similarity=0.154  Sum_probs=60.6

Q ss_pred             CCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCc-----eeeeecc--cCCCeeEeeecCCceEEEeeCCCcEEEeecCCC
Q psy12697        481 GPIFALKWNKRGNYILSAGVDKTTIIWDAASGQ-----CEQQFSF--HSAPALDVDWQSNTSFASCSTDQHIHVCKLHSD  553 (602)
Q Consensus       481 ~~v~~i~~s~~~~~l~s~~~dg~i~iwd~~~~~-----~~~~~~~--~~~~v~~~~~s~~~~l~~~~~d~~i~iw~~~~~  553 (602)
                      ..+..+.+.+++.+++++ .+|.+ +|....++     .......  ....++++.|.+++.++.++..|.+.... ..+
T Consensus       281 ~~l~~v~~~~dg~l~l~g-~~G~l-~~S~d~G~~~~~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G~~G~v~~s~-D~G  357 (398)
T PLN00033        281 RRIQNMGWRADGGLWLLT-RGGGL-YVSKGTGLTEEDFDFEEADIKSRGFGILDVGYRSKKEAWAAGGSGILLRST-DGG  357 (398)
T ss_pred             cceeeeeEcCCCCEEEEe-CCceE-EEecCCCCcccccceeecccCCCCcceEEEEEcCCCcEEEEECCCcEEEeC-CCC
Confidence            345667777787777665 55654 33444443     1222221  12348899999988777777888777654 333


Q ss_pred             CceeeeecccccceEEEEecCCcEEEEEECCCCCeEEEeccCCeEE
Q psy12697        554 KPVKSFEGHTTGQLVHSYKGTGGIFEVCWNSRGDKVGASASDGSVF  599 (602)
Q Consensus       554 ~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~v~  599 (602)
                      +.-...+..        -......+.+.|.++++.+ +.+.+|.|.
T Consensus       358 ~tW~~~~~~--------~~~~~~ly~v~f~~~~~g~-~~G~~G~il  394 (398)
T PLN00033        358 KSWKRDKGA--------DNIAANLYSVKFFDDKKGF-VLGNDGVLL  394 (398)
T ss_pred             cceeEcccc--------CCCCcceeEEEEcCCCceE-EEeCCcEEE
Confidence            221111100        0113568899998776655 456666653

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	602
2xtc_A	90	Structure Of The Tbl1 Tetramerisation Domain Length		3e-35
2ymu_A	577	Structure Of A Highly Repetitive Propeller Structur		7e-34
2ymu_A	577	Structure Of A Highly Repetitive Propeller Structur		1e-13
2xl2_A	334	Wdr5 In Complex With An Rbbp5 Peptide Recruited To		1e-31
2xl2_A	334	Wdr5 In Complex With An Rbbp5 Peptide Recruited To		7e-23
2xl2_A	334	Wdr5 In Complex With An Rbbp5 Peptide Recruited To		5e-14
2xl2_A	334	Wdr5 In Complex With An Rbbp5 Peptide Recruited To		8e-07
2gnq_A	336	Structure Of Wdr5 Length = 336		2e-31
2gnq_A	336	Structure Of Wdr5 Length = 336		8e-23
2gnq_A	336	Structure Of Wdr5 Length = 336		5e-14
2gnq_A	336	Structure Of Wdr5 Length = 336		9e-07
3psl_A	318	Fine-Tuning The Stimulation Of Mll1 Methyltransfera		2e-31
3psl_A	318	Fine-Tuning The Stimulation Of Mll1 Methyltransfera		7e-23
3psl_A	318	Fine-Tuning The Stimulation Of Mll1 Methyltransfera		5e-14
3psl_A	318	Fine-Tuning The Stimulation Of Mll1 Methyltransfera		8e-07
2h9l_A	329	Wdr5delta23 Length = 329		2e-31
2h9l_A	329	Wdr5delta23 Length = 329		6e-23
2h9l_A	329	Wdr5delta23 Length = 329		5e-14
2h9l_A	329	Wdr5delta23 Length = 329		9e-07
3smr_A	312	Crystal Structure Of Human Wd Repeat Domain 5 With		2e-31
3smr_A	312	Crystal Structure Of Human Wd Repeat Domain 5 With		7e-23
3smr_A	312	Crystal Structure Of Human Wd Repeat Domain 5 With		5e-14
3smr_A	312	Crystal Structure Of Human Wd Repeat Domain 5 With		9e-07
4a7j_A	318	Symmetric Dimethylation Of H3 Arginine 2 Is A Novel		2e-31
4a7j_A	318	Symmetric Dimethylation Of H3 Arginine 2 Is A Novel		7e-23
4a7j_A	318	Symmetric Dimethylation Of H3 Arginine 2 Is A Novel		5e-14
4a7j_A	318	Symmetric Dimethylation Of H3 Arginine 2 Is A Novel		9e-07
2h13_A	317	Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length		2e-31
2h13_A	317	Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length		7e-23
2h13_A	317	Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length		5e-14
2h13_A	317	Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length		9e-07
2h9m_A	313	Wdr5 In Complex With Unmodified H3k4 Peptide Length		2e-31
2h9m_A	313	Wdr5 In Complex With Unmodified H3k4 Peptide Length		8e-23
2h9m_A	313	Wdr5 In Complex With Unmodified H3k4 Peptide Length		6e-14
2h9m_A	313	Wdr5 In Complex With Unmodified H3k4 Peptide Length		9e-07
2h68_A	312	Histone H3 Recognition And Presentation By The Wdr5		2e-31
2h68_A	312	Histone H3 Recognition And Presentation By The Wdr5		9e-23
2h68_A	312	Histone H3 Recognition And Presentation By The Wdr5		6e-14
2h68_A	312	Histone H3 Recognition And Presentation By The Wdr5		9e-07
3emh_A	318	Structural Basis Of Wdr5-Mll Interaction Length = 3		2e-31
3emh_A	318	Structural Basis Of Wdr5-Mll Interaction Length = 3		7e-23
3emh_A	318	Structural Basis Of Wdr5-Mll Interaction Length = 3		5e-14
3emh_A	318	Structural Basis Of Wdr5-Mll Interaction Length = 3		9e-07
2g9a_A	311	Structural Basis For The Specific Recognition Of Me		2e-31
2g9a_A	311	Structural Basis For The Specific Recognition Of Me		6e-23
2g9a_A	311	Structural Basis For The Specific Recognition Of Me		5e-14
2g9a_A	311	Structural Basis For The Specific Recognition Of Me		3e-07
2g99_A	308	Structural Basis For The Specific Recognition Of Me		3e-31
2g99_A	308	Structural Basis For The Specific Recognition Of Me		8e-23
2g99_A	308	Structural Basis For The Specific Recognition Of Me		6e-14
2g99_A	308	Structural Basis For The Specific Recognition Of Me		9e-07
2cnx_A	315	Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.		3e-31
2cnx_A	315	Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.		4e-22
2cnx_A	315	Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.		5e-14
2cnx_A	315	Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.		3e-07
3mxx_A	315	Crystal Structure Of Wdr5 Mutant (S62a) Length = 31		5e-31
3mxx_A	315	Crystal Structure Of Wdr5 Mutant (S62a) Length = 31		1e-22
3mxx_A	315	Crystal Structure Of Wdr5 Mutant (S62a) Length = 31		7e-07
3n0e_A	315	Crystal Structure Of Wdr5 Mutant (W330y) Length = 3		1e-30
3n0e_A	315	Crystal Structure Of Wdr5 Mutant (W330y) Length = 3		5e-23
3n0e_A	315	Crystal Structure Of Wdr5 Mutant (W330y) Length = 3		4e-14
3n0e_A	315	Crystal Structure Of Wdr5 Mutant (W330y) Length = 3		4e-07
2co0_A	315	Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs		1e-30
2co0_A	315	Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs		2e-21
2co0_A	315	Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs		4e-14
2co0_A	315	Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs		3e-07
3n0d_A	315	Crystal Structure Of Wdr5 Mutant (W330f) Length = 3		2e-30
3n0d_A	315	Crystal Structure Of Wdr5 Mutant (W330f) Length = 3		5e-23
3n0d_A	315	Crystal Structure Of Wdr5 Mutant (W330f) Length = 3		5e-14
3n0d_A	315	Crystal Structure Of Wdr5 Mutant (W330f) Length = 3		4e-07
2xtd_A	71	Structure Of The Tbl1 Tetramerisation Domain Length		1e-28
1r5m_A	425	Crystal Structure Of The C-Terminal Wd40 Domain Of		2e-25
1r5m_A	425	Crystal Structure Of The C-Terminal Wd40 Domain Of		4e-07
1vyh_C	410	Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410		4e-19
3fm0_A	345	Crystal Structure Of Wd40 Protein Ciao1 Length = 34		2e-18
3sfz_A	1249	Crystal Structure Of Full-Length Murine Apaf-1 Leng		2e-16
3sfz_A	1249	Crystal Structure Of Full-Length Murine Apaf-1 Leng		2e-04
3shf_A	1256	Crystal Structure Of The R265s Mutant Of Full-Lengt		2e-16
3shf_A	1256	Crystal Structure Of The R265s Mutant Of Full-Lengt		2e-04
1erj_A	393	Crystal Structure Of The C-Terminal Wd40 Domain Of		6e-16
1erj_A	393	Crystal Structure Of The C-Terminal Wd40 Domain Of		6e-13
3iza_B	1263	Structure Of An Apoptosome-Procaspase-9 Card Comple		7e-16
2ovp_B	445	Structure Of The Skp1-Fbw7 Complex Length = 445		5e-15
2hes_X	330	Cytosolic Iron-sulphur Assembly Protein- 1 Length =		3e-14
2hes_X	330	Cytosolic Iron-sulphur Assembly Protein- 1 Length =		8e-10
2hes_X	330	Cytosolic Iron-sulphur Assembly Protein- 1 Length =		1e-07
2pbi_B	354	The Multifunctional Nature Of Gbeta5RGS9 REVEALED F		4e-13
2pbi_B	354	The Multifunctional Nature Of Gbeta5RGS9 REVEALED F		3e-11
2pbi_B	354	The Multifunctional Nature Of Gbeta5RGS9 REVEALED F		1e-07
3c99_A	432	Structural Basis Of Histone H4 Recognition By P55 L		8e-12
2yba_A	422	Crystal Structure Of Nurf55 In Complex With Histone		8e-12
2xyi_A	430	Crystal Structure Of Nurf55 In Complex With A H4 Pe		9e-12
3iz6_a	380	Localization Of The Small Subunit Ribosomal Protein		1e-11
3iz6_a	380	Localization Of The Small Subunit Ribosomal Protein		4e-05
3gfc_A	425	Crystal Structure Of Histone-Binding Protein Rbbp4		2e-11
3cfs_B	414	Structural Basis Of The Interaction Of Rbap46RBAP48		2e-11
3cfv_B	414	Structural Basis Of The Interaction Of Rbap46RBAP48		3e-11
3mks_B	464	Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH		5e-11
4ggc_A	318	Structural Analysis Of Human Cdc20 Supports Multi-S		1e-10
4ggc_A	318	Structural Analysis Of Human Cdc20 Supports Multi-S		2e-05
4ggd_A	431	Structural Analysis Of Human Cdc20 Supports Multisi		1e-10
4gga_A	420	Structural Analysis Of Human Cdc20 Supports Multi-S		1e-10
3rfg_A	319	Crystal Structure Of The Yeast Rack1 Dimer In Space		1e-10
3rfg_A	319	Crystal Structure Of The Yeast Rack1 Dimer In Space		2e-09
3rfh_A	319	Crystal Structure Of The Yeast Rack1 Dimer In Space		1e-10
3rfh_A	319	Crystal Structure Of The Yeast Rack1 Dimer In Space		2e-09
3izb_a	319	Localization Of The Small Subunit Ribosomal Protein		1e-10
3izb_a	319	Localization Of The Small Subunit Ribosomal Protein		2e-09
1p22_A	435	Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex		1e-10
1trj_A	314	Homology Model Of Yeast Rack1 Protein Fitted Into 1		1e-10
1trj_A	314	Homology Model Of Yeast Rack1 Protein Fitted Into 1		2e-09
3jyv_R	313	Structure Of The 40s Rrna And Proteins And PE TRNA		1e-10
3jyv_R	313	Structure Of The 40s Rrna And Proteins And PE TRNA		2e-09
1nex_B	464	Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Comp		3e-10
3frx_A	319	Crystal Structure Of The Yeast Orthologue Of Rack1,		5e-10
3frx_A	319	Crystal Structure Of The Yeast Orthologue Of Rack1,		7e-09
2xzm_R	343	Crystal Structure Of The Eukaryotic 40s Ribosomal S		1e-09
2xzm_R	343	Crystal Structure Of The Eukaryotic 40s Ribosomal S		9e-09
3dm0_A	694	Maltose Binding Protein Fusion With Rack1 From A. T		1e-09
3zey_7	318	High-resolution Cryo-electron Microscopy Structure		7e-09
3zey_7	318	High-resolution Cryo-electron Microscopy Structure		4e-04
3sn6_B	351	Crystal Structure Of The Beta2 Adrenergic Receptor-		9e-09
3sn6_B	351	Crystal Structure Of The Beta2 Adrenergic Receptor-		5e-06
3sn6_B	351	Crystal Structure Of The Beta2 Adrenergic Receptor-		3e-05
3sn6_B	351	Crystal Structure Of The Beta2 Adrenergic Receptor-		2e-04
1got_B	340	Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimer		9e-09
1got_B	340	Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimer		8e-06
1got_B	340	Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimer		1e-05
1got_B	340	Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimer		2e-04
1a0r_B	340	Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-		9e-09
1a0r_B	340	Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-		8e-06
1a0r_B	340	Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-		1e-05
1a0r_B	340	Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-		2e-04
2bcj_B	340	Crystal Structure Of G Protein-coupled Receptor Kin		9e-09
2bcj_B	340	Crystal Structure Of G Protein-coupled Receptor Kin		5e-06
2bcj_B	340	Crystal Structure Of G Protein-coupled Receptor Kin		3e-05
2bcj_B	340	Crystal Structure Of G Protein-coupled Receptor Kin		2e-04
1gg2_B	340	G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Bet		1e-08
1gg2_B	340	G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Bet		6e-06
1gg2_B	340	G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Bet		3e-05
1gg2_B	340	G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Bet		2e-04
3odt_A	313	Crystal Structure Of Wd40 Beta Propeller Domain Of		1e-08
3odt_A	313	Crystal Structure Of Wd40 Beta Propeller Domain Of		6e-05
1nr0_A	611	Two Seven-Bladed Beta-Propeller Domains Revealed By		2e-08
4aow_A	340	Crystal Structure Of The Human Rack1 Protein At A R		2e-08
4aow_A	340	Crystal Structure Of The Human Rack1 Protein At A R		2e-06
2zkq_a	317	Structure Of A Mammalian Ribosomal 40s Subunit With		2e-08
2zkq_a	317	Structure Of A Mammalian Ribosomal 40s Subunit With		3e-06
1gxr_A	337	Wd40 Region Of Human Groucho/tle1 Length = 337		6e-08
3ow8_A	321	Crystal Structure Of The Wd Repeat-Containing Prote		1e-07
3ow8_A	321	Crystal Structure Of The Wd Repeat-Containing Prote		3e-07
3ow8_A	321	Crystal Structure Of The Wd Repeat-Containing Prote		1e-04
2ynp_A	604	Yeast Betaprime Cop 1-604 With Ktktn Motif Length =		5e-07
2ynp_A	604	Yeast Betaprime Cop 1-604 With Ktktn Motif Length =		1e-05
3mkq_A	814	Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subco		6e-07
3mkq_A	814	Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subco		1e-05
2yno_A	310	Yeast Betaprime Cop 1-304h6 Length = 310		8e-07
2yno_A	310	Yeast Betaprime Cop 1-304h6 Length = 310		1e-05
2ynn_A	304	Yeast Betaprime Cop 1-304 With Ktktn Motif Length =		8e-07
2ynn_A	304	Yeast Betaprime Cop 1-304 With Ktktn Motif Length =		1e-05
3mmy_A	368	Structural And Functional Analysis Of The Interacti		1e-06
3mmy_A	368	Structural And Functional Analysis Of The Interacti		2e-05
4aez_A	401	Crystal Structure Of Mitotic Checkpoint Complex Len		5e-06
2aq5_A	402	Crystal Structure Of Murine Coronin-1 Length = 402		5e-06
2aq5_A	402	Crystal Structure Of Murine Coronin-1 Length = 402		2e-04
3jrp_A	379	Sec13 With Nup145c (Aa109-179) Insertion Blade Leng		9e-06
2b4e_A	402	Crystal Structure Of Murine Coronin-1: Monoclinic F		9e-06
2b4e_A	402	Crystal Structure Of Murine Coronin-1: Monoclinic F		8e-04
2pm6_B	297	Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF		1e-05
2pm9_B	297	Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT O		2e-05
3acp_A	417	Crystal Structure Of Yeast Rpn14, A Chaperone Of Th		3e-05
3jro_A	753	Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice		3e-05
3vl1_A	420	Crystal Structure Of Yeast Rpn14 Length = 420		3e-05
2pm7_B	297	Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF		5e-05
4a11_B	408	Structure Of The Hsddb1-Hscsa Complex Length = 408		7e-05
3ewe_A	349	Crystal Structure Of The Nup85SEH1 COMPLEX Length =		2e-04
3f3p_A	351	Crystal Structure Of The Nucleoporin Pair Nup85-Seh		2e-04
3f3f_A	351	Crystal Structure Of The Nucleoporin Pair Nup85-Seh		2e-04
3dxk_C	372	Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND IN		4e-04
1k8k_C	372	Crystal Structure Of Arp23 COMPLEX Length = 372		4e-04
1pi6_A	615	Yeast Actin Interacting Protein 1 (Aip1), Orthorhom		6e-04
1s4u_X	407	Crystal Structure Analysis Of The Beta-Propeller Pr		7e-04
3zwl_B	369	Structure Of Eukaryotic Translation Initiation Fact		9e-04

>pdb|2XTC|A Chain A, Structure Of The Tbl1 Tetramerisation Domain Length = 90

Iteration: 1
 Score =  146 bits (368), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 70/90 (77%), Positives = 80/90 (88%), Gaps = 2/90 (2%)
Query: 1  MTYSSDEVNFLVYRYLQESGFQHSAYTFGIESHISQSNIDGALVPPAALLSIIQKGLQYT 60
          M+ +SDEVNFLVYRYLQESGF HSA+TFGIESHISQSNI+G LVPPAAL+SI+QKGLQY 
Sbjct: 1  MSITSDEVNFLVYRYLQESGFSHSAFTFGIESHISQSNINGTLVPPAALISILQKGLQYV 60
Query: 61 EAEISVGENGQ--EQRPTESLSLIDAVLPD 88
          EAEIS+ E+G   + RP ESLSLIDAV+PD
Sbjct: 61 EAEISINEDGTVFDGRPIESLSLIDAVMPD 90

>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577

Iteration: 1
 Score =  142 bits (357), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 137/497 (27%), Positives = 233/497 (46%), Gaps = 60/497 (12%)
Query: 121 TLPLWDVERGECLNTLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKG 180
           T+ LW+   G+ L TLT H+  V+ VAFSPDG+ +AS S DK V +W+ R GQL+ +  G
Sbjct: 39  TVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTG 96
Query: 181 -TGGIFEVCWNSRGTPPNPPESMEVDASIEIPQSKA---TKLIGHESEVFICAWNPVKDF 236
            +  +  V ++  G       S   D ++++          L GH S V+  A++P    
Sbjct: 97  HSSSVRGVAFSPDG---QTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQT 153
Query: 237 LASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFLA 296
           +AS S D T ++W+      ++ + LQ +  H  S           V  + ++ +G  +A
Sbjct: 154 IASASDDKTVKLWN------RNGQLLQTLTGHSSS-----------VWGVAFSPDGQTIA 196
Query: 297 TGSYDGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCE 356
           + S D   ++W  +G L  TL  H   +  + ++  G  I SA  DKT  +W+  +GQ  
Sbjct: 197 SASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLL 255
Query: 357 QQFSFHSAPALDVDWQSN-TSFASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQ 415
           Q  + HS+    V ++ +  + AS S D+ + +    + + +++  GH++ V  + + P 
Sbjct: 256 QTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPD 314
Query: 416 GLLLASCSDDMTLKIWSLDKDNCVHDLQAHNKEIYTIKWSPTGPETS-----------NP 464
           G  +AS SDD T+K+W+ +  + +  L  H+  ++ + +SP G   +           N 
Sbjct: 315 GQTIASASDDKTVKLWNRNGQH-LQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR 373
Query: 465 NMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAP 524
           N  L+     TL  H   +  + ++  G  I SA  DKT  +W+  +GQ  Q  + HS+ 
Sbjct: 374 NGQLL----QTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSS 428
Query: 525 ALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEGHTTGQLVHSYKG-TGGIFEVCWN 583
              V        A    DQ I       DK VK +  +  GQL+ +  G +  +  V ++
Sbjct: 429 VWGV--------AFSPDDQTI--ASASDDKTVKLW--NRNGQLLQTLTGHSSSVRGVAFS 476
Query: 584 SRGDKVGASASDGSVFK 600
             G  + ASASD    K
Sbjct: 477 PDGQTI-ASASDDKTVK 492

>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577

Iteration: 1
 Score = 75.1 bits (183), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 75/300 (25%), Positives = 137/300 (45%), Gaps = 34/300 (11%)
Query: 314 KSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQS 373
           ++ L  H   +  + ++  G  I SA  DKT  +W+  +GQ  Q  + HS+    V +  
Sbjct: 9   RNRLEAHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSP 67
Query: 374 N-TSFASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWS 432
           +  + AS S D+ + +    + + +++  GH++ V  + + P G  +AS SDD T+K+W+
Sbjct: 68  DGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN 126
Query: 433 LDKDNCVHDLQAHNKEIYTIKWSPTGPETS-----------NPNMSLIFILKSTLGQHKG 481
            +    +  L  H+  ++ + +SP G   +           N N  L+     TL  H  
Sbjct: 127 RNG-QLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLL----QTLTGHSS 181
Query: 482 PIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTSFASCST 541
            ++ + ++  G  I SA  DKT  +W+  +GQ  Q  + HS+    V +  +    + ++
Sbjct: 182 SVWGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASAS 240
Query: 542 DQHIHVCKLHSDKPVKSFEGHTTGQLVHSYKG-TGGIFEVCWNSRGDKVGASASDGSVFK 600
           D          DK VK +  +  GQL+ +  G +  +  V +   G  + ASASD    K
Sbjct: 241 D----------DKTVKLW--NRNGQLLQTLTGHSSSVNGVAFRPDGQTI-ASASDDKTVK 287

>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334

Iteration: 1
 Score =  134 bits (337), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 97/313 (30%), Positives = 158/313 (50%), Gaps = 32/313 (10%)
Query: 135 TLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKGTG-GIFEVCWNSRG 193
           TL  HT+ V SV FSP+G++LAS S DK + IW A  G+   +  G   GI +V W+S  
Sbjct: 40  TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 99
Query: 194 TPPNPPESMEVDASIEIPQSKATK----LIGHESEVFICAWNPVKDFLASGSGDSTARIW 249
              N   S   D +++I    + K    L GH + VF C +NP  + + SGS D + RIW
Sbjct: 100 ---NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 156
Query: 250 DMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFLATGSYDGYARIW-- 307
           D+     K  K L+ +  H           +  V+++ +N +GS + + SYDG  RIW  
Sbjct: 157 DV-----KTGKCLKTLPAH-----------SDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 200
Query: 308 TSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPAL 367
            S   LK+ +     P+  +K++  G YIL+A +D T  +WD + G+C + ++ H     
Sbjct: 201 ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY 260
Query: 368 DVDWQSNTS----FASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCS 423
            +    + +      S S D  +++  L + + V+  +GHT+ V +    P   ++AS +
Sbjct: 261 CIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAA 320
Query: 424 --DDMTLKIWSLD 434
             +D T+K+W  D
Sbjct: 321 LENDKTIKLWKSD 333

>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334

Iteration: 1
 Score =  105 bits (262), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 70/266 (26%), Positives = 132/266 (49%), Gaps = 14/266 (5%)
Query: 312 SLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDW 371
           +LK TL  H   + ++K++  G ++ S+  DK   IW A  G+ E+  S H     DV W
Sbjct: 36  ALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAW 95
Query: 372 QSNTS-FASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKI 430
            S+++   S S D+ + +  + S K +K+ +GH+N V    ++PQ  L+ S S D +++I
Sbjct: 96  SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 155
Query: 431 WSLDKDNCVHDLQAHNKEIYTIKWSPTGP---ETSNPNMSLIF------ILKSTLGQHKG 481
           W +    C+  L AH+  +  + ++  G     +S   +  I+       LK+ +     
Sbjct: 156 WDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP 215
Query: 482 PIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTS----FA 537
           P+  +K++  G YIL+A +D T  +WD + G+C + ++ H      +    + +      
Sbjct: 216 PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIV 275
Query: 538 SCSTDQHIHVCKLHSDKPVKSFEGHT 563
           S S D  +++  L + + V+  +GHT
Sbjct: 276 SGSEDNLVYIWNLQTKEIVQKLQGHT 301

>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334

Iteration: 1
 Score = 76.3 bits (186), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 57/212 (26%), Positives = 98/212 (46%), Gaps = 12/212 (5%)
Query: 377 FASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKD 436
            AS S D+ I +   +  K  K+  GH   ++ + W     LL S SDD TLKIW +   
Sbjct: 60  LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG 119
Query: 437 NCVHDLQAHNKEIYTIKWSPTGPETSNPNMS---LIFILKS-----TLGQHKGPIFALKW 488
            C+  L+ H+  ++   ++P      + +      I+ +K+     TL  H  P+ A+ +
Sbjct: 120 KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHF 179
Query: 489 NKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALD-VDWQSNTSFASCST-DQHIH 546
           N+ G+ I+S+  D    IWD ASGQC +       P +  V +  N  +   +T D  + 
Sbjct: 180 NRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLK 239
Query: 547 VCKLHSDKPVKSFEGHTTGQ--LVHSYKGTGG 576
           +      K +K++ GH   +  +  ++  TGG
Sbjct: 240 LWDYSKGKCLKTYTGHKNEKYCIFANFSVTGG 271

>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334

Iteration: 1
 Score = 52.4 bits (124), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 32/106 (30%), Positives = 54/106 (50%), Gaps = 5/106 (4%)
Query: 459 PETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQF 518
           P    PN +L F    TL  H   + ++K++  G ++ S+  DK   IW A  G+ E+  
Sbjct: 28  PTPVKPNYALKF----TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI 83
Query: 519 SFHSAPALDVDWQSNTS-FASCSTDQHIHVCKLHSDKPVKSFEGHT 563
           S H     DV W S+++   S S D+ + +  + S K +K+ +GH+
Sbjct: 84  SGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHS 129

>pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336

Iteration: 1
 Score =  134 bits (336), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 97/313 (30%), Positives = 158/313 (50%), Gaps = 32/313 (10%)
Query: 135 TLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKGTG-GIFEVCWNSRG 193
           TL  HT+ V SV FSP+G++LAS S DK + IW A  G+   +  G   GI +V W+S  
Sbjct: 42  TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 101
Query: 194 TPPNPPESMEVDASIEIPQSKATK----LIGHESEVFICAWNPVKDFLASGSGDSTARIW 249
              N   S   D +++I    + K    L GH + VF C +NP  + + SGS D + RIW
Sbjct: 102 ---NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 158
Query: 250 DMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFLATGSYDGYARIW-- 307
           D+     K  K L+ +  H           +  V+++ +N +GS + + SYDG  RIW  
Sbjct: 159 DV-----KTGKCLKTLPAH-----------SDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 202
Query: 308 TSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPAL 367
            S   LK+ +     P+  +K++  G YIL+A +D T  +WD + G+C + ++ H     
Sbjct: 203 ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY 262
Query: 368 DVDWQSNTS----FASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCS 423
            +    + +      S S D  +++  L + + V+  +GHT+ V +    P   ++AS +
Sbjct: 263 CIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAA 322
Query: 424 --DDMTLKIWSLD 434
             +D T+K+W  D
Sbjct: 323 LENDKTIKLWKSD 335

>pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336

Iteration: 1
 Score =  105 bits (262), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 70/266 (26%), Positives = 132/266 (49%), Gaps = 14/266 (5%)
Query: 312 SLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDW 371
           +LK TL  H   + ++K++  G ++ S+  DK   IW A  G+ E+  S H     DV W
Sbjct: 38  ALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAW 97
Query: 372 QSNTS-FASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKI 430
            S+++   S S D+ + +  + S K +K+ +GH+N V    ++PQ  L+ S S D +++I
Sbjct: 98  SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 157
Query: 431 WSLDKDNCVHDLQAHNKEIYTIKWSPTGP---ETSNPNMSLIF------ILKSTLGQHKG 481
           W +    C+  L AH+  +  + ++  G     +S   +  I+       LK+ +     
Sbjct: 158 WDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP 217
Query: 482 PIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTS----FA 537
           P+  +K++  G YIL+A +D T  +WD + G+C + ++ H      +    + +      
Sbjct: 218 PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIV 277
Query: 538 SCSTDQHIHVCKLHSDKPVKSFEGHT 563
           S S D  +++  L + + V+  +GHT
Sbjct: 278 SGSEDNLVYIWNLQTKEIVQKLQGHT 303

>pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336

Iteration: 1
 Score = 76.3 bits (186), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 57/212 (26%), Positives = 98/212 (46%), Gaps = 12/212 (5%)
Query: 377 FASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKD 436
            AS S D+ I +   +  K  K+  GH   ++ + W     LL S SDD TLKIW +   
Sbjct: 62  LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG 121
Query: 437 NCVHDLQAHNKEIYTIKWSPTGPETSNPNMS---LIFILKS-----TLGQHKGPIFALKW 488
            C+  L+ H+  ++   ++P      + +      I+ +K+     TL  H  P+ A+ +
Sbjct: 122 KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHF 181
Query: 489 NKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALD-VDWQSNTSFASCST-DQHIH 546
           N+ G+ I+S+  D    IWD ASGQC +       P +  V +  N  +   +T D  + 
Sbjct: 182 NRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLK 241
Query: 547 VCKLHSDKPVKSFEGHTTGQ--LVHSYKGTGG 576
           +      K +K++ GH   +  +  ++  TGG
Sbjct: 242 LWDYSKGKCLKTYTGHKNEKYCIFANFSVTGG 273

>pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336

Iteration: 1
 Score = 52.0 bits (123), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 32/106 (30%), Positives = 54/106 (50%), Gaps = 5/106 (4%)
Query: 459 PETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQF 518
           P    PN +L F    TL  H   + ++K++  G ++ S+  DK   IW A  G+ E+  
Sbjct: 30  PTPVKPNYALKF----TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI 85
Query: 519 SFHSAPALDVDWQSNTS-FASCSTDQHIHVCKLHSDKPVKSFEGHT 563
           S H     DV W S+++   S S D+ + +  + S K +K+ +GH+
Sbjct: 86  SGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHS 131

>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318

Iteration: 1
 Score =  134 bits (336), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 97/313 (30%), Positives = 158/313 (50%), Gaps = 32/313 (10%)
Query: 135 TLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKGTG-GIFEVCWNSRG 193
           TL  HT+ V SV FSP+G++LAS S DK + IW A  G+   +  G   GI +V W+S  
Sbjct: 24  TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 83
Query: 194 TPPNPPESMEVDASIEIPQSKATK----LIGHESEVFICAWNPVKDFLASGSGDSTARIW 249
              N   S   D +++I    + K    L GH + VF C +NP  + + SGS D + RIW
Sbjct: 84  ---NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 140
Query: 250 DMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFLATGSYDGYARIW-- 307
           D+     K  K L+ +  H           +  V+++ +N +GS + + SYDG  RIW  
Sbjct: 141 DV-----KTGKCLKTLPAH-----------SDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 184
Query: 308 TSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPAL 367
            S   LK+ +     P+  +K++  G YIL+A +D T  +WD + G+C + ++ H     
Sbjct: 185 ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY 244
Query: 368 DVDWQSNTS----FASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCS 423
            +    + +      S S D  +++  L + + V+  +GHT+ V +    P   ++AS +
Sbjct: 245 CIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAA 304
Query: 424 --DDMTLKIWSLD 434
             +D T+K+W  D
Sbjct: 305 LENDKTIKLWKSD 317

>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318

Iteration: 1
 Score =  105 bits (262), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 70/266 (26%), Positives = 132/266 (49%), Gaps = 14/266 (5%)
Query: 312 SLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDW 371
           +LK TL  H   + ++K++  G ++ S+  DK   IW A  G+ E+  S H     DV W
Sbjct: 20  ALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAW 79
Query: 372 QSNTS-FASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKI 430
            S+++   S S D+ + +  + S K +K+ +GH+N V    ++PQ  L+ S S D +++I
Sbjct: 80  SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 139
Query: 431 WSLDKDNCVHDLQAHNKEIYTIKWSPTGP---ETSNPNMSLIF------ILKSTLGQHKG 481
           W +    C+  L AH+  +  + ++  G     +S   +  I+       LK+ +     
Sbjct: 140 WDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP 199
Query: 482 PIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTS----FA 537
           P+  +K++  G YIL+A +D T  +WD + G+C + ++ H      +    + +      
Sbjct: 200 PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIV 259
Query: 538 SCSTDQHIHVCKLHSDKPVKSFEGHT 563
           S S D  +++  L + + V+  +GHT
Sbjct: 260 SGSEDNLVYIWNLQTKEIVQKLQGHT 285

>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318

Iteration: 1
 Score = 76.3 bits (186), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 57/212 (26%), Positives = 98/212 (46%), Gaps = 12/212 (5%)
Query: 377 FASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKD 436
            AS S D+ I +   +  K  K+  GH   ++ + W     LL S SDD TLKIW +   
Sbjct: 44  LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG 103
Query: 437 NCVHDLQAHNKEIYTIKWSPTGPETSNPNMS---LIFILKS-----TLGQHKGPIFALKW 488
            C+  L+ H+  ++   ++P      + +      I+ +K+     TL  H  P+ A+ +
Sbjct: 104 KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHF 163
Query: 489 NKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALD-VDWQSNTSFASCST-DQHIH 546
           N+ G+ I+S+  D    IWD ASGQC +       P +  V +  N  +   +T D  + 
Sbjct: 164 NRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLK 223
Query: 547 VCKLHSDKPVKSFEGHTTGQ--LVHSYKGTGG 576
           +      K +K++ GH   +  +  ++  TGG
Sbjct: 224 LWDYSKGKCLKTYTGHKNEKYCIFANFSVTGG 255

>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318

Iteration: 1
 Score = 52.4 bits (124), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 32/106 (30%), Positives = 54/106 (50%), Gaps = 5/106 (4%)
Query: 459 PETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQF 518
           P    PN +L F    TL  H   + ++K++  G ++ S+  DK   IW A  G+ E+  
Sbjct: 12  PTPVKPNYALKF----TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI 67
Query: 519 SFHSAPALDVDWQSNTS-FASCSTDQHIHVCKLHSDKPVKSFEGHT 563
           S H     DV W S+++   S S D+ + +  + S K +K+ +GH+
Sbjct: 68  SGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHS 113

>pdb|2H9L|A Chain A, Wdr5delta23 Length = 329

Iteration: 1
 Score =  134 bits (336), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 97/313 (30%), Positives = 158/313 (50%), Gaps = 32/313 (10%)
Query: 135 TLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKGTG-GIFEVCWNSRG 193
           TL  HT+ V SV FSP+G++LAS S DK + IW A  G+   +  G   GI +V W+S  
Sbjct: 35  TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 94
Query: 194 TPPNPPESMEVDASIEIPQSKATK----LIGHESEVFICAWNPVKDFLASGSGDSTARIW 249
              N   S   D +++I    + K    L GH + VF C +NP  + + SGS D + RIW
Sbjct: 95  ---NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 151
Query: 250 DMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFLATGSYDGYARIW-- 307
           D+     K  K L+ +  H           +  V+++ +N +GS + + SYDG  RIW  
Sbjct: 152 DV-----KTGKCLKTLPAH-----------SDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 195
Query: 308 TSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPAL 367
            S   LK+ +     P+  +K++  G YIL+A +D T  +WD + G+C + ++ H     
Sbjct: 196 ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY 255
Query: 368 DVDWQSNTS----FASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCS 423
            +    + +      S S D  +++  L + + V+  +GHT+ V +    P   ++AS +
Sbjct: 256 CIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAA 315
Query: 424 --DDMTLKIWSLD 434
             +D T+K+W  D
Sbjct: 316 LENDKTIKLWKSD 328

>pdb|2H9L|A Chain A, Wdr5delta23 Length = 329

Iteration: 1
 Score =  105 bits (262), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 70/266 (26%), Positives = 132/266 (49%), Gaps = 14/266 (5%)
Query: 312 SLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDW 371
           +LK TL  H   + ++K++  G ++ S+  DK   IW A  G+ E+  S H     DV W
Sbjct: 31  ALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAW 90
Query: 372 QSNTS-FASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKI 430
            S+++   S S D+ + +  + S K +K+ +GH+N V    ++PQ  L+ S S D +++I
Sbjct: 91  SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 150
Query: 431 WSLDKDNCVHDLQAHNKEIYTIKWSPTGP---ETSNPNMSLIF------ILKSTLGQHKG 481
           W +    C+  L AH+  +  + ++  G     +S   +  I+       LK+ +     
Sbjct: 151 WDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP 210
Query: 482 PIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTS----FA 537
           P+  +K++  G YIL+A +D T  +WD + G+C + ++ H      +    + +      
Sbjct: 211 PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIV 270
Query: 538 SCSTDQHIHVCKLHSDKPVKSFEGHT 563
           S S D  +++  L + + V+  +GHT
Sbjct: 271 SGSEDNLVYIWNLQTKEIVQKLQGHT 296

>pdb|2H9L|A Chain A, Wdr5delta23 Length = 329

Iteration: 1
 Score = 76.3 bits (186), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 57/212 (26%), Positives = 98/212 (46%), Gaps = 12/212 (5%)
Query: 377 FASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKD 436
            AS S D+ I +   +  K  K+  GH   ++ + W     LL S SDD TLKIW +   
Sbjct: 55  LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG 114
Query: 437 NCVHDLQAHNKEIYTIKWSPTGPETSNPNMS---LIFILKS-----TLGQHKGPIFALKW 488
            C+  L+ H+  ++   ++P      + +      I+ +K+     TL  H  P+ A+ +
Sbjct: 115 KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHF 174
Query: 489 NKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALD-VDWQSNTSFASCST-DQHIH 546
           N+ G+ I+S+  D    IWD ASGQC +       P +  V +  N  +   +T D  + 
Sbjct: 175 NRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLK 234
Query: 547 VCKLHSDKPVKSFEGHTTGQ--LVHSYKGTGG 576
           +      K +K++ GH   +  +  ++  TGG
Sbjct: 235 LWDYSKGKCLKTYTGHKNEKYCIFANFSVTGG 266

>pdb|2H9L|A Chain A, Wdr5delta23 Length = 329

Iteration: 1
 Score = 52.0 bits (123), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 32/106 (30%), Positives = 54/106 (50%), Gaps = 5/106 (4%)
Query: 459 PETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQF 518
           P    PN +L F    TL  H   + ++K++  G ++ S+  DK   IW A  G+ E+  
Sbjct: 23  PTPVKPNYALKF----TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI 78
Query: 519 SFHSAPALDVDWQSNTS-FASCSTDQHIHVCKLHSDKPVKSFEGHT 563
           S H     DV W S+++   S S D+ + +  + S K +K+ +GH+
Sbjct: 79  SGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHS 124

>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312

Iteration: 1
 Score =  134 bits (336), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 97/313 (30%), Positives = 158/313 (50%), Gaps = 32/313 (10%)
Query: 135 TLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKGTG-GIFEVCWNSRG 193
           TL  HT+ V SV FSP+G++LAS S DK + IW A  G+   +  G   GI +V W+S  
Sbjct: 18  TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 77
Query: 194 TPPNPPESMEVDASIEIPQSKATK----LIGHESEVFICAWNPVKDFLASGSGDSTARIW 249
              N   S   D +++I    + K    L GH + VF C +NP  + + SGS D + RIW
Sbjct: 78  ---NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 134
Query: 250 DMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFLATGSYDGYARIW-- 307
           D+     K  K L+ +  H           +  V+++ +N +GS + + SYDG  RIW  
Sbjct: 135 DV-----KTGKCLKTLPAH-----------SDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 178
Query: 308 TSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPAL 367
            S   LK+ +     P+  +K++  G YIL+A +D T  +WD + G+C + ++ H     
Sbjct: 179 ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY 238
Query: 368 DVDWQSNTS----FASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCS 423
            +    + +      S S D  +++  L + + V+  +GHT+ V +    P   ++AS +
Sbjct: 239 CIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAA 298
Query: 424 --DDMTLKIWSLD 434
             +D T+K+W  D
Sbjct: 299 LENDKTIKLWKSD 311

>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312

Iteration: 1
 Score =  105 bits (262), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 70/266 (26%), Positives = 132/266 (49%), Gaps = 14/266 (5%)
Query: 312 SLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDW 371
           +LK TL  H   + ++K++  G ++ S+  DK   IW A  G+ E+  S H     DV W
Sbjct: 14  ALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAW 73
Query: 372 QSNTS-FASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKI 430
            S+++   S S D+ + +  + S K +K+ +GH+N V    ++PQ  L+ S S D +++I
Sbjct: 74  SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 133
Query: 431 WSLDKDNCVHDLQAHNKEIYTIKWSPTGP---ETSNPNMSLIF------ILKSTLGQHKG 481
           W +    C+  L AH+  +  + ++  G     +S   +  I+       LK+ +     
Sbjct: 134 WDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP 193
Query: 482 PIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTS----FA 537
           P+  +K++  G YIL+A +D T  +WD + G+C + ++ H      +    + +      
Sbjct: 194 PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIV 253
Query: 538 SCSTDQHIHVCKLHSDKPVKSFEGHT 563
           S S D  +++  L + + V+  +GHT
Sbjct: 254 SGSEDNLVYIWNLQTKEIVQKLQGHT 279

>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312

Iteration: 1
 Score = 76.3 bits (186), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 57/212 (26%), Positives = 98/212 (46%), Gaps = 12/212 (5%)
Query: 377 FASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKD 436
            AS S D+ I +   +  K  K+  GH   ++ + W     LL S SDD TLKIW +   
Sbjct: 38  LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG 97
Query: 437 NCVHDLQAHNKEIYTIKWSPTGPETSNPNMS---LIFILKS-----TLGQHKGPIFALKW 488
            C+  L+ H+  ++   ++P      + +      I+ +K+     TL  H  P+ A+ +
Sbjct: 98  KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHF 157
Query: 489 NKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALD-VDWQSNTSFASCST-DQHIH 546
           N+ G+ I+S+  D    IWD ASGQC +       P +  V +  N  +   +T D  + 
Sbjct: 158 NRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLK 217
Query: 547 VCKLHSDKPVKSFEGHTTGQ--LVHSYKGTGG 576
           +      K +K++ GH   +  +  ++  TGG
Sbjct: 218 LWDYSKGKCLKTYTGHKNEKYCIFANFSVTGG 249

>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312

Iteration: 1
 Score = 52.0 bits (123), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 32/106 (30%), Positives = 54/106 (50%), Gaps = 5/106 (4%)
Query: 459 PETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQF 518
           P    PN +L F    TL  H   + ++K++  G ++ S+  DK   IW A  G+ E+  
Sbjct: 6   PTPVKPNYALKF----TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI 61
Query: 519 SFHSAPALDVDWQSNTS-FASCSTDQHIHVCKLHSDKPVKSFEGHT 563
           S H     DV W S+++   S S D+ + +  + S K +K+ +GH+
Sbjct: 62  SGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHS 107

>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318

Iteration: 1
 Score =  133 bits (335), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 97/313 (30%), Positives = 158/313 (50%), Gaps = 32/313 (10%)
Query: 135 TLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKGTG-GIFEVCWNSRG 193
           TL  HT+ V SV FSP+G++LAS S DK + IW A  G+   +  G   GI +V W+S  
Sbjct: 24  TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 83
Query: 194 TPPNPPESMEVDASIEIPQSKATK----LIGHESEVFICAWNPVKDFLASGSGDSTARIW 249
              N   S   D +++I    + K    L GH + VF C +NP  + + SGS D + RIW
Sbjct: 84  ---NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 140
Query: 250 DMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFLATGSYDGYARIW-- 307
           D+     K  K L+ +  H           +  V+++ +N +GS + + SYDG  RIW  
Sbjct: 141 DV-----KTGKCLKTLPAH-----------SDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 184
Query: 308 TSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPAL 367
            S   LK+ +     P+  +K++  G YIL+A +D T  +WD + G+C + ++ H     
Sbjct: 185 ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY 244
Query: 368 DVDWQSNTS----FASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCS 423
            +    + +      S S D  +++  L + + V+  +GHT+ V +    P   ++AS +
Sbjct: 245 CIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAA 304
Query: 424 --DDMTLKIWSLD 434
             +D T+K+W  D
Sbjct: 305 LENDKTIKLWKSD 317

>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318

Iteration: 1
 Score =  105 bits (262), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 70/266 (26%), Positives = 132/266 (49%), Gaps = 14/266 (5%)
Query: 312 SLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDW 371
           +LK TL  H   + ++K++  G ++ S+  DK   IW A  G+ E+  S H     DV W
Sbjct: 20  ALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAW 79
Query: 372 QSNTS-FASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKI 430
            S+++   S S D+ + +  + S K +K+ +GH+N V    ++PQ  L+ S S D +++I
Sbjct: 80  SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 139
Query: 431 WSLDKDNCVHDLQAHNKEIYTIKWSPTGP---ETSNPNMSLIF------ILKSTLGQHKG 481
           W +    C+  L AH+  +  + ++  G     +S   +  I+       LK+ +     
Sbjct: 140 WDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP 199
Query: 482 PIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTS----FA 537
           P+  +K++  G YIL+A +D T  +WD + G+C + ++ H      +    + +      
Sbjct: 200 PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIV 259
Query: 538 SCSTDQHIHVCKLHSDKPVKSFEGHT 563
           S S D  +++  L + + V+  +GHT
Sbjct: 260 SGSEDNLVYIWNLQTKEIVQKLQGHT 285

>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318

Iteration: 1
 Score = 76.3 bits (186), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 57/212 (26%), Positives = 98/212 (46%), Gaps = 12/212 (5%)
Query: 377 FASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKD 436
            AS S D+ I +   +  K  K+  GH   ++ + W     LL S SDD TLKIW +   
Sbjct: 44  LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG 103
Query: 437 NCVHDLQAHNKEIYTIKWSPTGPETSNPNMS---LIFILKS-----TLGQHKGPIFALKW 488
            C+  L+ H+  ++   ++P      + +      I+ +K+     TL  H  P+ A+ +
Sbjct: 104 KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHF 163
Query: 489 NKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALD-VDWQSNTSFASCST-DQHIH 546
           N+ G+ I+S+  D    IWD ASGQC +       P +  V +  N  +   +T D  + 
Sbjct: 164 NRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLK 223
Query: 547 VCKLHSDKPVKSFEGHTTGQ--LVHSYKGTGG 576
           +      K +K++ GH   +  +  ++  TGG
Sbjct: 224 LWDYSKGKCLKTYTGHKNEKYCIFANFSVTGG 255

>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318

Iteration: 1
 Score = 52.0 bits (123), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 32/106 (30%), Positives = 54/106 (50%), Gaps = 5/106 (4%)
Query: 459 PETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQF 518
           P    PN +L F    TL  H   + ++K++  G ++ S+  DK   IW A  G+ E+  
Sbjct: 12  PTPVKPNYALKF----TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI 67
Query: 519 SFHSAPALDVDWQSNTS-FASCSTDQHIHVCKLHSDKPVKSFEGHT 563
           S H     DV W S+++   S S D+ + +  + S K +K+ +GH+
Sbjct: 68  SGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHS 113

>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317

Iteration: 1
 Score =  133 bits (335), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 97/313 (30%), Positives = 158/313 (50%), Gaps = 32/313 (10%)
Query: 135 TLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKGTG-GIFEVCWNSRG 193
           TL  HT+ V SV FSP+G++LAS S DK + IW A  G+   +  G   GI +V W+S  
Sbjct: 23  TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 82
Query: 194 TPPNPPESMEVDASIEIPQSKATK----LIGHESEVFICAWNPVKDFLASGSGDSTARIW 249
              N   S   D +++I    + K    L GH + VF C +NP  + + SGS D + RIW
Sbjct: 83  ---NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 139
Query: 250 DMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFLATGSYDGYARIW-- 307
           D+     K  K L+ +  H           +  V+++ +N +GS + + SYDG  RIW  
Sbjct: 140 DV-----KTGKCLKTLPAH-----------SDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 183
Query: 308 TSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPAL 367
            S   LK+ +     P+  +K++  G YIL+A +D T  +WD + G+C + ++ H     
Sbjct: 184 ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY 243
Query: 368 DVDWQSNTS----FASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCS 423
            +    + +      S S D  +++  L + + V+  +GHT+ V +    P   ++AS +
Sbjct: 244 CIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAA 303
Query: 424 --DDMTLKIWSLD 434
             +D T+K+W  D
Sbjct: 304 LENDKTIKLWKSD 316

>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317

Iteration: 1
 Score =  105 bits (262), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 70/266 (26%), Positives = 132/266 (49%), Gaps = 14/266 (5%)
Query: 312 SLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDW 371
           +LK TL  H   + ++K++  G ++ S+  DK   IW A  G+ E+  S H     DV W
Sbjct: 19  ALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAW 78
Query: 372 QSNTS-FASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKI 430
            S+++   S S D+ + +  + S K +K+ +GH+N V    ++PQ  L+ S S D +++I
Sbjct: 79  SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 138
Query: 431 WSLDKDNCVHDLQAHNKEIYTIKWSPTGP---ETSNPNMSLIF------ILKSTLGQHKG 481
           W +    C+  L AH+  +  + ++  G     +S   +  I+       LK+ +     
Sbjct: 139 WDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP 198
Query: 482 PIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTS----FA 537
           P+  +K++  G YIL+A +D T  +WD + G+C + ++ H      +    + +      
Sbjct: 199 PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIV 258
Query: 538 SCSTDQHIHVCKLHSDKPVKSFEGHT 563
           S S D  +++  L + + V+  +GHT
Sbjct: 259 SGSEDNLVYIWNLQTKEIVQKLQGHT 284

>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317

Iteration: 1
 Score = 76.3 bits (186), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 57/212 (26%), Positives = 98/212 (46%), Gaps = 12/212 (5%)
Query: 377 FASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKD 436
            AS S D+ I +   +  K  K+  GH   ++ + W     LL S SDD TLKIW +   
Sbjct: 43  LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG 102
Query: 437 NCVHDLQAHNKEIYTIKWSPTGPETSNPNMS---LIFILKS-----TLGQHKGPIFALKW 488
            C+  L+ H+  ++   ++P      + +      I+ +K+     TL  H  P+ A+ +
Sbjct: 103 KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHF 162
Query: 489 NKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALD-VDWQSNTSFASCST-DQHIH 546
           N+ G+ I+S+  D    IWD ASGQC +       P +  V +  N  +   +T D  + 
Sbjct: 163 NRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLK 222
Query: 547 VCKLHSDKPVKSFEGHTTGQ--LVHSYKGTGG 576
           +      K +K++ GH   +  +  ++  TGG
Sbjct: 223 LWDYSKGKCLKTYTGHKNEKYCIFANFSVTGG 254

>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317

Iteration: 1
 Score = 52.0 bits (123), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 32/106 (30%), Positives = 54/106 (50%), Gaps = 5/106 (4%)
Query: 459 PETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQF 518
           P    PN +L F    TL  H   + ++K++  G ++ S+  DK   IW A  G+ E+  
Sbjct: 11  PTPVKPNYALKF----TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI 66
Query: 519 SFHSAPALDVDWQSNTS-FASCSTDQHIHVCKLHSDKPVKSFEGHT 563
           S H     DV W S+++   S S D+ + +  + S K +K+ +GH+
Sbjct: 67  SGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHS 112

>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313

Iteration: 1
 Score =  133 bits (335), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 97/313 (30%), Positives = 158/313 (50%), Gaps = 32/313 (10%)
Query: 135 TLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKGTG-GIFEVCWNSRG 193
           TL  HT+ V SV FSP+G++LAS S DK + IW A  G+   +  G   GI +V W+S  
Sbjct: 19  TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 78
Query: 194 TPPNPPESMEVDASIEIPQSKATK----LIGHESEVFICAWNPVKDFLASGSGDSTARIW 249
              N   S   D +++I    + K    L GH + VF C +NP  + + SGS D + RIW
Sbjct: 79  ---NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 135
Query: 250 DMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFLATGSYDGYARIW-- 307
           D+     K  K L+ +  H           +  V+++ +N +GS + + SYDG  RIW  
Sbjct: 136 DV-----KTGKCLKTLPAH-----------SDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 179
Query: 308 TSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPAL 367
            S   LK+ +     P+  +K++  G YIL+A +D T  +WD + G+C + ++ H     
Sbjct: 180 ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY 239
Query: 368 DVDWQSNTS----FASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCS 423
            +    + +      S S D  +++  L + + V+  +GHT+ V +    P   ++AS +
Sbjct: 240 CIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAA 299
Query: 424 --DDMTLKIWSLD 434
             +D T+K+W  D
Sbjct: 300 LENDKTIKLWKSD 312

>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313

Iteration: 1
 Score =  105 bits (262), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 70/266 (26%), Positives = 132/266 (49%), Gaps = 14/266 (5%)
Query: 312 SLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDW 371
           +LK TL  H   + ++K++  G ++ S+  DK   IW A  G+ E+  S H     DV W
Sbjct: 15  ALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAW 74
Query: 372 QSNTS-FASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKI 430
            S+++   S S D+ + +  + S K +K+ +GH+N V    ++PQ  L+ S S D +++I
Sbjct: 75  SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 134
Query: 431 WSLDKDNCVHDLQAHNKEIYTIKWSPTGP---ETSNPNMSLIF------ILKSTLGQHKG 481
           W +    C+  L AH+  +  + ++  G     +S   +  I+       LK+ +     
Sbjct: 135 WDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP 194
Query: 482 PIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTS----FA 537
           P+  +K++  G YIL+A +D T  +WD + G+C + ++ H      +    + +      
Sbjct: 195 PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIV 254
Query: 538 SCSTDQHIHVCKLHSDKPVKSFEGHT 563
           S S D  +++  L + + V+  +GHT
Sbjct: 255 SGSEDNLVYIWNLQTKEIVQKLQGHT 280

>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313

Iteration: 1
 Score = 75.9 bits (185), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 57/212 (26%), Positives = 98/212 (46%), Gaps = 12/212 (5%)
Query: 377 FASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKD 436
            AS S D+ I +   +  K  K+  GH   ++ + W     LL S SDD TLKIW +   
Sbjct: 39  LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG 98
Query: 437 NCVHDLQAHNKEIYTIKWSPTGPETSNPNMS---LIFILKS-----TLGQHKGPIFALKW 488
            C+  L+ H+  ++   ++P      + +      I+ +K+     TL  H  P+ A+ +
Sbjct: 99  KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHF 158
Query: 489 NKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALD-VDWQSNTSFASCST-DQHIH 546
           N+ G+ I+S+  D    IWD ASGQC +       P +  V +  N  +   +T D  + 
Sbjct: 159 NRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLK 218
Query: 547 VCKLHSDKPVKSFEGHTTGQ--LVHSYKGTGG 576
           +      K +K++ GH   +  +  ++  TGG
Sbjct: 219 LWDYSKGKCLKTYTGHKNEKYCIFANFSVTGG 250

>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313

Iteration: 1
 Score = 52.0 bits (123), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 32/106 (30%), Positives = 54/106 (50%), Gaps = 5/106 (4%)
Query: 459 PETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQF 518
           P    PN +L F    TL  H   + ++K++  G ++ S+  DK   IW A  G+ E+  
Sbjct: 7   PTPVKPNYALKF----TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI 62
Query: 519 SFHSAPALDVDWQSNTS-FASCSTDQHIHVCKLHSDKPVKSFEGHT 563
           S H     DV W S+++   S S D+ + +  + S K +K+ +GH+
Sbjct: 63  SGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHS 108

>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312

Iteration: 1
 Score =  133 bits (335), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 97/313 (30%), Positives = 158/313 (50%), Gaps = 32/313 (10%)
Query: 135 TLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKGTG-GIFEVCWNSRG 193
           TL  HT+ V SV FSP+G++LAS S DK + IW A  G+   +  G   GI +V W+S  
Sbjct: 18  TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 77
Query: 194 TPPNPPESMEVDASIEIPQSKATK----LIGHESEVFICAWNPVKDFLASGSGDSTARIW 249
              N   S   D +++I    + K    L GH + VF C +NP  + + SGS D + RIW
Sbjct: 78  ---NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 134
Query: 250 DMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFLATGSYDGYARIW-- 307
           D+     K  K L+ +  H           +  V+++ +N +GS + + SYDG  RIW  
Sbjct: 135 DV-----KTGKCLKTLPAH-----------SDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 178
Query: 308 TSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPAL 367
            S   LK+ +     P+  +K++  G YIL+A +D T  +WD + G+C + ++ H     
Sbjct: 179 ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY 238
Query: 368 DVDWQSNTS----FASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCS 423
            +    + +      S S D  +++  L + + V+  +GHT+ V +    P   ++AS +
Sbjct: 239 CIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAA 298
Query: 424 --DDMTLKIWSLD 434
             +D T+K+W  D
Sbjct: 299 LENDKTIKLWKSD 311

>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312

Iteration: 1
 Score =  105 bits (261), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 70/266 (26%), Positives = 132/266 (49%), Gaps = 14/266 (5%)
Query: 312 SLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDW 371
           +LK TL  H   + ++K++  G ++ S+  DK   IW A  G+ E+  S H     DV W
Sbjct: 14  ALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAW 73
Query: 372 QSNTS-FASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKI 430
            S+++   S S D+ + +  + S K +K+ +GH+N V    ++PQ  L+ S S D +++I
Sbjct: 74  SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 133
Query: 431 WSLDKDNCVHDLQAHNKEIYTIKWSPTGP---ETSNPNMSLIF------ILKSTLGQHKG 481
           W +    C+  L AH+  +  + ++  G     +S   +  I+       LK+ +     
Sbjct: 134 WDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP 193
Query: 482 PIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTS----FA 537
           P+  +K++  G YIL+A +D T  +WD + G+C + ++ H      +    + +      
Sbjct: 194 PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIV 253
Query: 538 SCSTDQHIHVCKLHSDKPVKSFEGHT 563
           S S D  +++  L + + V+  +GHT
Sbjct: 254 SGSEDNLVYIWNLQTKEIVQKLQGHT 279

>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312

Iteration: 1
 Score = 75.9 bits (185), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 57/212 (26%), Positives = 98/212 (46%), Gaps = 12/212 (5%)
Query: 377 FASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKD 436
            AS S D+ I +   +  K  K+  GH   ++ + W     LL S SDD TLKIW +   
Sbjct: 38  LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG 97
Query: 437 NCVHDLQAHNKEIYTIKWSPTGPETSNPNMS---LIFILKS-----TLGQHKGPIFALKW 488
            C+  L+ H+  ++   ++P      + +      I+ +K+     TL  H  P+ A+ +
Sbjct: 98  KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHF 157
Query: 489 NKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALD-VDWQSNTSFASCST-DQHIH 546
           N+ G+ I+S+  D    IWD ASGQC +       P +  V +  N  +   +T D  + 
Sbjct: 158 NRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLK 217
Query: 547 VCKLHSDKPVKSFEGHTTGQ--LVHSYKGTGG 576
           +      K +K++ GH   +  +  ++  TGG
Sbjct: 218 LWDYSKGKCLKTYTGHKNEKYCIFANFSVTGG 249

>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312

Iteration: 1
 Score = 52.0 bits (123), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 32/106 (30%), Positives = 54/106 (50%), Gaps = 5/106 (4%)
Query: 459 PETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQF 518
           P    PN +L F    TL  H   + ++K++  G ++ S+  DK   IW A  G+ E+  
Sbjct: 6   PTPVKPNYALKF----TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI 61
Query: 519 SFHSAPALDVDWQSNTS-FASCSTDQHIHVCKLHSDKPVKSFEGHT 563
           S H     DV W S+++   S S D+ + +  + S K +K+ +GH+
Sbjct: 62  SGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHS 107

>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318

Iteration: 1
 Score =  133 bits (335), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 97/313 (30%), Positives = 158/313 (50%), Gaps = 32/313 (10%)
Query: 135 TLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKGTG-GIFEVCWNSRG 193
           TL  HT+ V SV FSP+G++LAS S DK + IW A  G+   +  G   GI +V W+S  
Sbjct: 24  TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 83
Query: 194 TPPNPPESMEVDASIEIPQSKATK----LIGHESEVFICAWNPVKDFLASGSGDSTARIW 249
              N   S   D +++I    + K    L GH + VF C +NP  + + SGS D + RIW
Sbjct: 84  ---NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 140
Query: 250 DMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFLATGSYDGYARIW-- 307
           D+     K  K L+ +  H           +  V+++ +N +GS + + SYDG  RIW  
Sbjct: 141 DV-----KTGKCLKTLPAH-----------SDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 184
Query: 308 TSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPAL 367
            S   LK+ +     P+  +K++  G YIL+A +D T  +WD + G+C + ++ H     
Sbjct: 185 ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY 244
Query: 368 DVDWQSNTS----FASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCS 423
            +    + +      S S D  +++  L + + V+  +GHT+ V +    P   ++AS +
Sbjct: 245 CIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAA 304
Query: 424 --DDMTLKIWSLD 434
             +D T+K+W  D
Sbjct: 305 LENDKTIKLWKSD 317

>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318

Iteration: 1
 Score =  105 bits (262), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 70/266 (26%), Positives = 132/266 (49%), Gaps = 14/266 (5%)
Query: 312 SLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDW 371
           +LK TL  H   + ++K++  G ++ S+  DK   IW A  G+ E+  S H     DV W
Sbjct: 20  ALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAW 79
Query: 372 QSNTS-FASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKI 430
            S+++   S S D+ + +  + S K +K+ +GH+N V    ++PQ  L+ S S D +++I
Sbjct: 80  SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 139
Query: 431 WSLDKDNCVHDLQAHNKEIYTIKWSPTGP---ETSNPNMSLIF------ILKSTLGQHKG 481
           W +    C+  L AH+  +  + ++  G     +S   +  I+       LK+ +     
Sbjct: 140 WDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP 199
Query: 482 PIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTS----FA 537
           P+  +K++  G YIL+A +D T  +WD + G+C + ++ H      +    + +      
Sbjct: 200 PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIV 259
Query: 538 SCSTDQHIHVCKLHSDKPVKSFEGHT 563
           S S D  +++  L + + V+  +GHT
Sbjct: 260 SGSEDNLVYIWNLQTKEIVQKLQGHT 285

>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318

Iteration: 1
 Score = 76.3 bits (186), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 57/212 (26%), Positives = 98/212 (46%), Gaps = 12/212 (5%)
Query: 377 FASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKD 436
            AS S D+ I +   +  K  K+  GH   ++ + W     LL S SDD TLKIW +   
Sbjct: 44  LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG 103
Query: 437 NCVHDLQAHNKEIYTIKWSPTGPETSNPNMS---LIFILKS-----TLGQHKGPIFALKW 488
            C+  L+ H+  ++   ++P      + +      I+ +K+     TL  H  P+ A+ +
Sbjct: 104 KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHF 163
Query: 489 NKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALD-VDWQSNTSFASCST-DQHIH 546
           N+ G+ I+S+  D    IWD ASGQC +       P +  V +  N  +   +T D  + 
Sbjct: 164 NRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLK 223
Query: 547 VCKLHSDKPVKSFEGHTTGQ--LVHSYKGTGG 576
           +      K +K++ GH   +  +  ++  TGG
Sbjct: 224 LWDYSKGKCLKTYTGHKNEKYCIFANFSVTGG 255

>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318

Iteration: 1
 Score = 52.0 bits (123), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 32/106 (30%), Positives = 54/106 (50%), Gaps = 5/106 (4%)
Query: 459 PETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQF 518
           P    PN +L F    TL  H   + ++K++  G ++ S+  DK   IW A  G+ E+  
Sbjct: 12  PTPVKPNYALKF----TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI 67
Query: 519 SFHSAPALDVDWQSNTS-FASCSTDQHIHVCKLHSDKPVKSFEGHT 563
           S H     DV W S+++   S S D+ + +  + S K +K+ +GH+
Sbjct: 68  SGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHS 113

>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311

Iteration: 1
 Score =  133 bits (335), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 97/313 (30%), Positives = 158/313 (50%), Gaps = 32/313 (10%)
Query: 135 TLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKGTG-GIFEVCWNSRG 193
           TL  HT+ V SV FSP+G++LAS S DK + IW A  G+   +  G   GI +V W+S  
Sbjct: 17  TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 76
Query: 194 TPPNPPESMEVDASIEIPQSKATK----LIGHESEVFICAWNPVKDFLASGSGDSTARIW 249
              N   S   D +++I    + K    L GH + VF C +NP  + + SGS D + RIW
Sbjct: 77  ---NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 133
Query: 250 DMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFLATGSYDGYARIW-- 307
           D+     K  K L+ +  H           +  V+++ +N +GS + + SYDG  RIW  
Sbjct: 134 DV-----KTGKCLKTLPAH-----------SDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 177
Query: 308 TSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPAL 367
            S   LK+ +     P+  +K++  G YIL+A +D T  +WD + G+C + ++ H     
Sbjct: 178 ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY 237
Query: 368 DVDWQSNTS----FASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCS 423
            +    + +      S S D  +++  L + + V+  +GHT+ V +    P   ++AS +
Sbjct: 238 CIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAA 297
Query: 424 --DDMTLKIWSLD 434
             +D T+K+W  D
Sbjct: 298 LENDKTIKLWKSD 310

>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311

Iteration: 1
 Score =  105 bits (262), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 70/266 (26%), Positives = 132/266 (49%), Gaps = 14/266 (5%)
Query: 312 SLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDW 371
           +LK TL  H   + ++K++  G ++ S+  DK   IW A  G+ E+  S H     DV W
Sbjct: 13  ALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAW 72
Query: 372 QSNTS-FASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKI 430
            S+++   S S D+ + +  + S K +K+ +GH+N V    ++PQ  L+ S S D +++I
Sbjct: 73  SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 132
Query: 431 WSLDKDNCVHDLQAHNKEIYTIKWSPTGP---ETSNPNMSLIF------ILKSTLGQHKG 481
           W +    C+  L AH+  +  + ++  G     +S   +  I+       LK+ +     
Sbjct: 133 WDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP 192
Query: 482 PIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTS----FA 537
           P+  +K++  G YIL+A +D T  +WD + G+C + ++ H      +    + +      
Sbjct: 193 PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIV 252
Query: 538 SCSTDQHIHVCKLHSDKPVKSFEGHT 563
           S S D  +++  L + + V+  +GHT
Sbjct: 253 SGSEDNLVYIWNLQTKEIVQKLQGHT 278

>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311

Iteration: 1
 Score = 76.3 bits (186), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 57/212 (26%), Positives = 98/212 (46%), Gaps = 12/212 (5%)
Query: 377 FASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKD 436
            AS S D+ I +   +  K  K+  GH   ++ + W     LL S SDD TLKIW +   
Sbjct: 37  LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG 96
Query: 437 NCVHDLQAHNKEIYTIKWSPTGPETSNPNMS---LIFILKS-----TLGQHKGPIFALKW 488
            C+  L+ H+  ++   ++P      + +      I+ +K+     TL  H  P+ A+ +
Sbjct: 97  KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHF 156
Query: 489 NKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALD-VDWQSNTSFASCST-DQHIH 546
           N+ G+ I+S+  D    IWD ASGQC +       P +  V +  N  +   +T D  + 
Sbjct: 157 NRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLK 216
Query: 547 VCKLHSDKPVKSFEGHTTGQ--LVHSYKGTGG 576
           +      K +K++ GH   +  +  ++  TGG
Sbjct: 217 LWDYSKGKCLKTYTGHKNEKYCIFANFSVTGG 248

>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311

Iteration: 1
 Score = 53.5 bits (127), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 33/109 (30%), Positives = 55/109 (50%), Gaps = 5/109 (4%)
Query: 456 PTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCE 515
           P G     PN +L F    TL  H   + ++K++  G ++ S+  DK   IW A  G+ E
Sbjct: 2   PLGSTPVKPNYALKF----TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE 57
Query: 516 QQFSFHSAPALDVDWQSNTS-FASCSTDQHIHVCKLHSDKPVKSFEGHT 563
           +  S H     DV W S+++   S S D+ + +  + S K +K+ +GH+
Sbjct: 58  KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHS 106

>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308

Iteration: 1
 Score =  133 bits (335), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 97/313 (30%), Positives = 158/313 (50%), Gaps = 32/313 (10%)
Query: 135 TLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKGTG-GIFEVCWNSRG 193
           TL  HT+ V SV FSP+G++LAS S DK + IW A  G+   +  G   GI +V W+S  
Sbjct: 14  TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 73
Query: 194 TPPNPPESMEVDASIEIPQSKATK----LIGHESEVFICAWNPVKDFLASGSGDSTARIW 249
              N   S   D +++I    + K    L GH + VF C +NP  + + SGS D + RIW
Sbjct: 74  ---NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 130
Query: 250 DMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFLATGSYDGYARIW-- 307
           D+     K  K L+ +  H           +  V+++ +N +GS + + SYDG  RIW  
Sbjct: 131 DV-----KTGKCLKTLPAH-----------SDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 174
Query: 308 TSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPAL 367
            S   LK+ +     P+  +K++  G YIL+A +D T  +WD + G+C + ++ H     
Sbjct: 175 ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY 234
Query: 368 DVDWQSNTS----FASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCS 423
            +    + +      S S D  +++  L + + V+  +GHT+ V +    P   ++AS +
Sbjct: 235 CIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAA 294
Query: 424 --DDMTLKIWSLD 434
             +D T+K+W  D
Sbjct: 295 LENDKTIKLWKSD 307

>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308

Iteration: 1
 Score =  105 bits (261), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 70/266 (26%), Positives = 132/266 (49%), Gaps = 14/266 (5%)
Query: 312 SLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDW 371
           +LK TL  H   + ++K++  G ++ S+  DK   IW A  G+ E+  S H     DV W
Sbjct: 10  ALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAW 69
Query: 372 QSNTS-FASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKI 430
            S+++   S S D+ + +  + S K +K+ +GH+N V    ++PQ  L+ S S D +++I
Sbjct: 70  SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 129
Query: 431 WSLDKDNCVHDLQAHNKEIYTIKWSPTGP---ETSNPNMSLIF------ILKSTLGQHKG 481
           W +    C+  L AH+  +  + ++  G     +S   +  I+       LK+ +     
Sbjct: 130 WDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP 189
Query: 482 PIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTS----FA 537
           P+  +K++  G YIL+A +D T  +WD + G+C + ++ H      +    + +      
Sbjct: 190 PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIV 249
Query: 538 SCSTDQHIHVCKLHSDKPVKSFEGHT 563
           S S D  +++  L + + V+  +GHT
Sbjct: 250 SGSEDNLVYIWNLQTKEIVQKLQGHT 275

>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308

Iteration: 1
 Score = 75.9 bits (185), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 57/212 (26%), Positives = 98/212 (46%), Gaps = 12/212 (5%)
Query: 377 FASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKD 436
            AS S D+ I +   +  K  K+  GH   ++ + W     LL S SDD TLKIW +   
Sbjct: 34  LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG 93
Query: 437 NCVHDLQAHNKEIYTIKWSPTGPETSNPNMS---LIFILKS-----TLGQHKGPIFALKW 488
            C+  L+ H+  ++   ++P      + +      I+ +K+     TL  H  P+ A+ +
Sbjct: 94  KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHF 153
Query: 489 NKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALD-VDWQSNTSFASCST-DQHIH 546
           N+ G+ I+S+  D    IWD ASGQC +       P +  V +  N  +   +T D  + 
Sbjct: 154 NRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLK 213
Query: 547 VCKLHSDKPVKSFEGHTTGQ--LVHSYKGTGG 576
           +      K +K++ GH   +  +  ++  TGG
Sbjct: 214 LWDYSKGKCLKTYTGHKNEKYCIFANFSVTGG 245

>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308

Iteration: 1
 Score = 52.0 bits (123), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 32/106 (30%), Positives = 54/106 (50%), Gaps = 5/106 (4%)
Query: 459 PETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQF 518
           P    PN +L F    TL  H   + ++K++  G ++ S+  DK   IW A  G+ E+  
Sbjct: 2   PTPVKPNYALKF----TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI 57
Query: 519 SFHSAPALDVDWQSNTS-FASCSTDQHIHVCKLHSDKPVKSFEGHT 563
           S H     DV W S+++   S S D+ + +  + S K +K+ +GH+
Sbjct: 58  SGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHS 103

>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315

Iteration: 1
 Score =  133 bits (335), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 96/314 (30%), Positives = 160/314 (50%), Gaps = 34/314 (10%)
Query: 135 TLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKGTG-GIFEVCWNSRG 193
           TL  HT+ V SV FSP+G++LAS S DK + IW A  G+   +  G   GI +V W+S  
Sbjct: 21  TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 80
Query: 194 TPPNPPESMEVDASIEIPQSKATK----LIGHESEVFICAWNPVKDFLASGSGDSTARIW 249
              N   S   D +++I    + K    L GH + VF C +NP  + + SGS D + RIW
Sbjct: 81  ---NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 137
Query: 250 DMTDSTKKDPKELQIVLRHCISKGGTEVPSNKD-VTSLDWNNNGSFLATGSYDGYARIW- 307
           D+         +  + L+         +P++ D V+++ +N +GS + + SYDG  RIW 
Sbjct: 138 DV---------KTGMCLK--------TLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 180
Query: 308 -TSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPA 366
             S   LK+ +     P+  +K++  G YIL+A +D T  +WD + G+C + ++ H    
Sbjct: 181 TASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEK 240
Query: 367 LDVDWQSNTS----FASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASC 422
             +    + +      S S D  +++  L + + V+  +GHT+ V +    P   ++AS 
Sbjct: 241 YCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASA 300
Query: 423 S--DDMTLKIWSLD 434
           +  +D T+K+W  D
Sbjct: 301 ALENDKTIKLWKSD 314

>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315

Iteration: 1
 Score =  103 bits (256), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 69/266 (25%), Positives = 131/266 (49%), Gaps = 14/266 (5%)
Query: 312 SLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDW 371
           +L  TL  H   + ++K++  G ++ S+  DK   IW A  G+ E+  S H     DV W
Sbjct: 17  ALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAW 76
Query: 372 QSNTS-FASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKI 430
            S+++   S S D+ + +  + S K +K+ +GH+N V    ++PQ  L+ S S D +++I
Sbjct: 77  SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 136
Query: 431 WSLDKDNCVHDLQAHNKEIYTIKWSPTGP---ETSNPNMSLIF------ILKSTLGQHKG 481
           W +    C+  L AH+  +  + ++  G     +S   +  I+       LK+ +     
Sbjct: 137 WDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP 196
Query: 482 PIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTS----FA 537
           P+  +K++  G YIL+A +D T  +WD + G+C + ++ H      +    + +      
Sbjct: 197 PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIV 256
Query: 538 SCSTDQHIHVCKLHSDKPVKSFEGHT 563
           S S D  +++  L + + V+  +GHT
Sbjct: 257 SGSEDNMVYIWNLQTKEIVQKLQGHT 282

>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315

Iteration: 1
 Score = 76.3 bits (186), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 59/216 (27%), Positives = 97/216 (44%), Gaps = 20/216 (9%)
Query: 377 FASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKD 436
            AS S D+ I +   +  K  K+  GH   ++ + W     LL S SDD TLKIW +   
Sbjct: 41  LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG 100
Query: 437 NCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIF------------ILKSTLGQHKGPIF 484
            C+  L+ H+  ++   ++P     SN  +S  F            +   TL  H  P+ 
Sbjct: 101 KCLKTLKGHSNYVFCCNFNP----QSNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVS 156
Query: 485 ALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALD-VDWQSNTSFASCST-D 542
           A+ +N+ G+ I+S+  D    IWD ASGQC +       P +  V +  N  +   +T D
Sbjct: 157 AVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLD 216
Query: 543 QHIHVCKLHSDKPVKSFEGHTTGQ--LVHSYKGTGG 576
             + +      K +K++ GH   +  +  ++  TGG
Sbjct: 217 NTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGG 252

>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315

Iteration: 1
 Score = 53.9 bits (128), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 32/106 (30%), Positives = 55/106 (51%), Gaps = 5/106 (4%)
Query: 459 PETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQF 518
           P    PN +L+F    TL  H   + ++K++  G ++ S+  DK   IW A  G+ E+  
Sbjct: 9   PTPVKPNYALMF----TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI 64
Query: 519 SFHSAPALDVDWQSNTS-FASCSTDQHIHVCKLHSDKPVKSFEGHT 563
           S H     DV W S+++   S S D+ + +  + S K +K+ +GH+
Sbjct: 65  SGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHS 110

>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315

Iteration: 1
 Score =  132 bits (332), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 97/314 (30%), Positives = 160/314 (50%), Gaps = 34/314 (10%)
Query: 135 TLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKGTG-GIFEVCWNSRG 193
           TL  HT+ V SV FSP+G++LA+ S DK + IW A  G+   +  G   GI +V W+S  
Sbjct: 21  TLAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS-- 78
Query: 194 TPPNPPESMEVDASIEIPQSKATK----LIGHESEVFICAWNPVKDFLASGSGDSTARIW 249
              N   S   D +++I    + K    L GH + VF C +NP  + + SGS D + RIW
Sbjct: 79  -DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 137
Query: 250 DMTDSTKKDPKELQIVLRHCISKGGTEVPSNKD-VTSLDWNNNGSFLATGSYDGYARIW- 307
           D+     K  K L+             +P++ D V+++ +N +GS + + SYDG  RIW 
Sbjct: 138 DV-----KTGKCLK------------TLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 180
Query: 308 -TSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPA 366
             S   LK+ +     P+  +K++  G YIL+A +D T  +WD + G+C + ++ H    
Sbjct: 181 TASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEK 240
Query: 367 LDVDWQSNTS----FASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASC 422
             +    + +      S S D  +++  L + + V+  +GHT+ V +    P   ++AS 
Sbjct: 241 YCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASA 300
Query: 423 S--DDMTLKIWSLD 434
           +  +D T+K+W  D
Sbjct: 301 ALENDKTIKLWKSD 314

>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315

Iteration: 1
 Score =  104 bits (260), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 69/266 (25%), Positives = 132/266 (49%), Gaps = 14/266 (5%)
Query: 312 SLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDW 371
           +LK TL  H   + ++K++  G ++ ++  DK   IW A  G+ E+  S H     DV W
Sbjct: 17  ALKFTLAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTISGHKLGISDVAW 76
Query: 372 QSNTS-FASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKI 430
            S+++   S S D+ + +  + S K +K+ +GH+N V    ++PQ  L+ S S D +++I
Sbjct: 77  SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 136
Query: 431 WSLDKDNCVHDLQAHNKEIYTIKWSPTGP---ETSNPNMSLIF------ILKSTLGQHKG 481
           W +    C+  L AH+  +  + ++  G     +S   +  I+       LK+ +     
Sbjct: 137 WDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP 196
Query: 482 PIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTS----FA 537
           P+  +K++  G YIL+A +D T  +WD + G+C + ++ H      +    + +      
Sbjct: 197 PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIV 256
Query: 538 SCSTDQHIHVCKLHSDKPVKSFEGHT 563
           S S D  +++  L + + V+  +GHT
Sbjct: 257 SGSEDNLVYIWNLQTKEIVQKLQGHT 282

>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315

Iteration: 1
 Score = 52.4 bits (124), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 32/107 (29%), Positives = 55/107 (51%), Gaps = 5/107 (4%)
Query: 458 GPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQ 517
           G E   PN +L F    TL  H   + ++K++  G ++ ++  DK   IW A  G+ E+ 
Sbjct: 8   GSEFVKPNYALKF----TLAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKT 63
Query: 518 FSFHSAPALDVDWQSNTS-FASCSTDQHIHVCKLHSDKPVKSFEGHT 563
            S H     DV W S+++   S S D+ + +  + S K +K+ +GH+
Sbjct: 64  ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHS 110

>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315

Iteration: 1
 Score =  131 bits (329), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 97/314 (30%), Positives = 160/314 (50%), Gaps = 34/314 (10%)
Query: 135 TLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKGTG-GIFEVCWNSRG 193
           TL  HT+ V SV FSP+G++LAS S DK + IW A  G+   +  G   GI +V W+S  
Sbjct: 21  TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS-- 78
Query: 194 TPPNPPESMEVDASIEIPQSKATK----LIGHESEVFICAWNPVKDFLASGSGDSTARIW 249
              N   S   D +++I    + K    L GH + VF C +NP  + + SGS D + RIW
Sbjct: 79  -DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 137
Query: 250 DMTDSTKKDPKELQIVLRHCISKGGTEVPSNKD-VTSLDWNNNGSFLATGSYDGYARIW- 307
           D+     K  K L+             +P++ D V+++ +N +GS + + SYDG  RIW 
Sbjct: 138 DV-----KTGKCLK------------TLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 180
Query: 308 -TSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPA 366
             S   LK+ +     P+  +K++  G YIL+A +D T  +WD + G+C + ++ H    
Sbjct: 181 TASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEK 240
Query: 367 LDVDWQSNTS----FASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASC 422
             +    + +      S S D  +++  L + + V+  +GHT+ V +    P   ++AS 
Sbjct: 241 YCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASA 300
Query: 423 S--DDMTLKIWSLD 434
           +  +D T+K++  D
Sbjct: 301 ALENDKTIKLYKSD 314

>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315

Iteration: 1
 Score =  105 bits (263), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 70/266 (26%), Positives = 132/266 (49%), Gaps = 14/266 (5%)
Query: 312 SLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDW 371
           +LK TL  H   + ++K++  G ++ S+  DK   IW A  G+ E+  S H     DV W
Sbjct: 17  ALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAW 76
Query: 372 QSNTS-FASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKI 430
            S+++   S S D+ + +  + S K +K+ +GH+N V    ++PQ  L+ S S D +++I
Sbjct: 77  SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 136
Query: 431 WSLDKDNCVHDLQAHNKEIYTIKWSPTGP---ETSNPNMSLIF------ILKSTLGQHKG 481
           W +    C+  L AH+  +  + ++  G     +S   +  I+       LK+ +     
Sbjct: 137 WDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP 196
Query: 482 PIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTS----FA 537
           P+  +K++  G YIL+A +D T  +WD + G+C + ++ H      +    + +      
Sbjct: 197 PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIV 256
Query: 538 SCSTDQHIHVCKLHSDKPVKSFEGHT 563
           S S D  +++  L + + V+  +GHT
Sbjct: 257 SGSEDNLVYIWNLQTKEIVQKLQGHT 282

>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315

Iteration: 1
 Score = 76.3 bits (186), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 57/212 (26%), Positives = 98/212 (46%), Gaps = 12/212 (5%)
Query: 377 FASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKD 436
            AS S D+ I +   +  K  K+  GH   ++ + W     LL S SDD TLKIW +   
Sbjct: 41  LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG 100
Query: 437 NCVHDLQAHNKEIYTIKWSPTGPETSNPNMS---LIFILKS-----TLGQHKGPIFALKW 488
            C+  L+ H+  ++   ++P      + +      I+ +K+     TL  H  P+ A+ +
Sbjct: 101 KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHF 160
Query: 489 NKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALD-VDWQSNTSFASCST-DQHIH 546
           N+ G+ I+S+  D    IWD ASGQC +       P +  V +  N  +   +T D  + 
Sbjct: 161 NRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLK 220
Query: 547 VCKLHSDKPVKSFEGHTTGQ--LVHSYKGTGG 576
           +      K +K++ GH   +  +  ++  TGG
Sbjct: 221 LWDYSKGKCLKTYTGHKNEKYCIFANFSVTGG 252

>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315

Iteration: 1
 Score = 53.1 bits (126), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 33/107 (30%), Positives = 55/107 (51%), Gaps = 5/107 (4%)
Query: 458 GPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQ 517
           G E   PN +L F    TL  H   + ++K++  G ++ S+  DK   IW A  G+ E+ 
Sbjct: 8   GSEFVKPNYALKF----TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKT 63
Query: 518 FSFHSAPALDVDWQSNTS-FASCSTDQHIHVCKLHSDKPVKSFEGHT 563
            S H     DV W S+++   S S D+ + +  + S K +K+ +GH+
Sbjct: 64  ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHS 110

>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315

Iteration: 1
 Score =  130 bits (328), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 95/314 (30%), Positives = 159/314 (50%), Gaps = 34/314 (10%)
Query: 135 TLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKGTG-GIFEVCWNSRG 193
           TL  HT+ V SV FSP+G++LAS S DK + IW A  G+   +  G   GI +V W+S  
Sbjct: 21  TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 80
Query: 194 TPPNPPESMEVDASIEIPQSKATK----LIGHESEVFICAWNPVKDFLASGSGDSTARIW 249
              N   S   D +++I    + K    L GH + VF C +NP  + + SGS D + RIW
Sbjct: 81  ---NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 137
Query: 250 DMTDSTKKDPKELQIVLRHCISKGGTEVPSNKD-VTSLDWNNNGSFLATGSYDGYARIW- 307
           D+         +  + L+         +P++ D V+++ +N +GS + + SYDG  RIW 
Sbjct: 138 DV---------KTGMCLK--------TLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 180
Query: 308 -TSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPA 366
             S   LK+ +     P+  +K++  G YIL+A +D    +WD + G+C + ++ H    
Sbjct: 181 TASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNDLKLWDYSKGKCLKTYTGHKNEK 240
Query: 367 LDVDWQSNTS----FASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASC 422
             +    + +      S S D  +++  L + + V+  +GHT+ V +    P   ++AS 
Sbjct: 241 YCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASA 300
Query: 423 S--DDMTLKIWSLD 434
           +  +D T+K+W  D
Sbjct: 301 ALENDKTIKLWKSD 314

>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315

Iteration: 1
 Score =  100 bits (250), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 68/266 (25%), Positives = 130/266 (48%), Gaps = 14/266 (5%)
Query: 312 SLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDW 371
           +L  TL  H   + ++K++  G ++ S+  DK   IW A  G+ E+  S H     DV W
Sbjct: 17  ALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAW 76
Query: 372 QSNTS-FASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKI 430
            S+++   S S D+ + +  + S K +K+ +GH+N V    ++PQ  L+ S S D +++I
Sbjct: 77  SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 136
Query: 431 WSLDKDNCVHDLQAHNKEIYTIKWSPTGP---ETSNPNMSLIF------ILKSTLGQHKG 481
           W +    C+  L AH+  +  + ++  G     +S   +  I+       LK+ +     
Sbjct: 137 WDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP 196
Query: 482 PIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTS----FA 537
           P+  +K++  G YIL+A +D    +WD + G+C + ++ H      +    + +      
Sbjct: 197 PVSFVKFSPNGKYILAATLDNDLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIV 256
Query: 538 SCSTDQHIHVCKLHSDKPVKSFEGHT 563
           S S D  +++  L + + V+  +GHT
Sbjct: 257 SGSEDNMVYIWNLQTKEIVQKLQGHT 282

>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315

Iteration: 1
 Score = 76.3 bits (186), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 59/216 (27%), Positives = 97/216 (44%), Gaps = 20/216 (9%)
Query: 377 FASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKD 436
            AS S D+ I +   +  K  K+  GH   ++ + W     LL S SDD TLKIW +   
Sbjct: 41  LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG 100
Query: 437 NCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIF------------ILKSTLGQHKGPIF 484
            C+  L+ H+  ++   ++P     SN  +S  F            +   TL  H  P+ 
Sbjct: 101 KCLKTLKGHSNYVFCCNFNP----QSNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVS 156
Query: 485 ALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALD-VDWQSNTSFASCST-D 542
           A+ +N+ G+ I+S+  D    IWD ASGQC +       P +  V +  N  +   +T D
Sbjct: 157 AVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLD 216
Query: 543 QHIHVCKLHSDKPVKSFEGHTTGQ--LVHSYKGTGG 576
             + +      K +K++ GH   +  +  ++  TGG
Sbjct: 217 NDLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGG 252

>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315

Iteration: 1
 Score = 53.5 bits (127), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 32/106 (30%), Positives = 55/106 (51%), Gaps = 5/106 (4%)
Query: 459 PETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQF 518
           P    PN +L+F    TL  H   + ++K++  G ++ S+  DK   IW A  G+ E+  
Sbjct: 9   PTPVKPNYALMF----TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI 64
Query: 519 SFHSAPALDVDWQSNTS-FASCSTDQHIHVCKLHSDKPVKSFEGHT 563
           S H     DV W S+++   S S D+ + +  + S K +K+ +GH+
Sbjct: 65  SGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHS 110

>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315

Iteration: 1
 Score =  130 bits (327), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 97/314 (30%), Positives = 160/314 (50%), Gaps = 34/314 (10%)
Query: 135 TLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKGTG-GIFEVCWNSRG 193
           TL  HT+ V SV FSP+G++LAS S DK + IW A  G+   +  G   GI +V W+S  
Sbjct: 21  TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS-- 78
Query: 194 TPPNPPESMEVDASIEIPQSKATK----LIGHESEVFICAWNPVKDFLASGSGDSTARIW 249
              N   S   D +++I    + K    L GH + VF C +NP  + + SGS D + RIW
Sbjct: 79  -DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 137
Query: 250 DMTDSTKKDPKELQIVLRHCISKGGTEVPSNKD-VTSLDWNNNGSFLATGSYDGYARIW- 307
           D+     K  K L+             +P++ D V+++ +N +GS + + SYDG  RIW 
Sbjct: 138 DV-----KTGKCLK------------TLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 180
Query: 308 -TSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPA 366
             S   LK+ +     P+  +K++  G YIL+A +D T  +WD + G+C + ++ H    
Sbjct: 181 TASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEK 240
Query: 367 LDVDWQSNTS----FASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASC 422
             +    + +      S S D  +++  L + + V+  +GHT+ V +    P   ++AS 
Sbjct: 241 YCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASA 300
Query: 423 S--DDMTLKIWSLD 434
           +  +D T+K++  D
Sbjct: 301 ALENDKTIKLFKSD 314

>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315

Iteration: 1
 Score =  105 bits (263), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 70/266 (26%), Positives = 132/266 (49%), Gaps = 14/266 (5%)
Query: 312 SLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDW 371
           +LK TL  H   + ++K++  G ++ S+  DK   IW A  G+ E+  S H     DV W
Sbjct: 17  ALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAW 76
Query: 372 QSNTS-FASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKI 430
            S+++   S S D+ + +  + S K +K+ +GH+N V    ++PQ  L+ S S D +++I
Sbjct: 77  SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 136
Query: 431 WSLDKDNCVHDLQAHNKEIYTIKWSPTGP---ETSNPNMSLIF------ILKSTLGQHKG 481
           W +    C+  L AH+  +  + ++  G     +S   +  I+       LK+ +     
Sbjct: 137 WDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP 196
Query: 482 PIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTS----FA 537
           P+  +K++  G YIL+A +D T  +WD + G+C + ++ H      +    + +      
Sbjct: 197 PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIV 256
Query: 538 SCSTDQHIHVCKLHSDKPVKSFEGHT 563
           S S D  +++  L + + V+  +GHT
Sbjct: 257 SGSEDNLVYIWNLQTKEIVQKLQGHT 282

>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315

Iteration: 1
 Score = 76.3 bits (186), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 57/212 (26%), Positives = 98/212 (46%), Gaps = 12/212 (5%)
Query: 377 FASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKD 436
            AS S D+ I +   +  K  K+  GH   ++ + W     LL S SDD TLKIW +   
Sbjct: 41  LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG 100
Query: 437 NCVHDLQAHNKEIYTIKWSPTGPETSNPNMS---LIFILKS-----TLGQHKGPIFALKW 488
            C+  L+ H+  ++   ++P      + +      I+ +K+     TL  H  P+ A+ +
Sbjct: 101 KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHF 160
Query: 489 NKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALD-VDWQSNTSFASCST-DQHIH 546
           N+ G+ I+S+  D    IWD ASGQC +       P +  V +  N  +   +T D  + 
Sbjct: 161 NRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLK 220
Query: 547 VCKLHSDKPVKSFEGHTTGQ--LVHSYKGTGG 576
           +      K +K++ GH   +  +  ++  TGG
Sbjct: 221 LWDYSKGKCLKTYTGHKNEKYCIFANFSVTGG 252

>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315

Iteration: 1
 Score = 53.1 bits (126), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 33/107 (30%), Positives = 55/107 (51%), Gaps = 5/107 (4%)
Query: 458 GPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQ 517
           G E   PN +L F    TL  H   + ++K++  G ++ S+  DK   IW A  G+ E+ 
Sbjct: 8   GSEFVKPNYALKF----TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKT 63
Query: 518 FSFHSAPALDVDWQSNTS-FASCSTDQHIHVCKLHSDKPVKSFEGHT 563
            S H     DV W S+++   S S D+ + +  + S K +K+ +GH+
Sbjct: 64  ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHS 110

>pdb|2XTD|A Chain A, Structure Of The Tbl1 Tetramerisation Domain Length = 71

Iteration: 1
 Score =  124 bits (312), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 57/70 (81%), Positives = 65/70 (92%)
Query: 1  MTYSSDEVNFLVYRYLQESGFQHSAYTFGIESHISQSNIDGALVPPAALLSIIQKGLQYT 60
          M+ +SDEVNFLVYRYLQESGF HSA+TFGIESHISQSNI+G LVPPAAL+SI+QKGLQY 
Sbjct: 1  MSITSDEVNFLVYRYLQESGFSHSAFTFGIESHISQSNINGTLVPPAALISILQKGLQYV 60
Query: 61 EAEISVGENG 70
          EAEIS+ E+G
Sbjct: 61 EAEISINEDG 70

>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2 Length = 425

Iteration: 1
 Score =  114 bits (285), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 74/261 (28%), Positives = 122/261 (46%), Gaps = 20/261 (7%)
Query: 214 KATKLIGHESEVFICAWNPVKD-FLASGSGDSTARIWDMTDSTKKDPK--ELQIV--LRH 268
           K  K I     +    WNP+ +  LA G  +S AR+  + ++ ++  K  +L I+  LRH
Sbjct: 37  KILKEIVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRH 96
Query: 269 CISKGGTEVPSNKDVTSLDWNNNGSFLATGSYDGYARIWTSDGSLKSTLGQHKGPIFALK 328
             +   +   +   VT L W+++G+ + TG  +G  R+W   G+L + L  H+ PI ++K
Sbjct: 97  PFALSASSGKTTNQVTCLAWSHDGNSIVTGVENGELRLWNKTGALLNVLNFHRAPIVSVK 156
Query: 329 WNKRGNYILSAGVDKTTIIWDAASGQCEQQFSF------------HSAP---ALDVDWQS 373
           WNK G +I+S  V+  TI+W+  SG   Q F              HS      +DV+W  
Sbjct: 157 WNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVD 216
Query: 374 NTSFASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSL 433
           +  F        I V ++    P     GH   ++ ++++    LL S SDD TL+IW  
Sbjct: 217 DDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHG 276
Query: 434 DKDNCVHDLQAHNKEIYTIKW 454
              N  +    H++ I +  W
Sbjct: 277 GNGNSQNCFYGHSQSIVSASW 297

>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2 Length = 425

Iteration: 1
 Score = 53.1 bits (126), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 41/155 (26%), Positives = 64/155 (41%), Gaps = 31/155 (20%)
Query: 423 SDDMTLKIWSLDKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGP 482
           ++ +T   WS D ++ V  ++  N E+    W+ TG             L + L  H+ P
Sbjct: 108 TNQVTCLAWSHDGNSIVTGVE--NGELRL--WNKTGA------------LLNVLNFHRAP 151
Query: 483 IFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSF------------HSAP---ALD 527
           I ++KWNK G +I+S  V+  TI+W+  SG   Q F              HS      +D
Sbjct: 152 IVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVD 211
Query: 528 VDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEGH 562
           V+W  +  F        I V ++    P     GH
Sbjct: 212 VEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGH 246

>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410

Iteration: 1
 Score = 93.2 bits (230), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 87/382 (22%), Positives = 145/382 (37%), Gaps = 101/382 (26%)
Query: 196 PNPPESMEVDASIEIPQSKATKLIGHESEVFICAWNPVKDFLASGSGDSTARIWDMTDST 255
           P PPE                 L GH S V    ++PV   + S S D+T ++WD     
Sbjct: 96  PRPPEKY--------------ALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDY---- 137
Query: 256 KKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFLATGSYDGYARIWTSDG-SLK 314
             +  + +  L     KG T+      V  + ++++G  LA+ S D   ++W   G    
Sbjct: 138 --ETGDFERTL-----KGHTD-----SVQDISFDHSGKLLASCSADMTIKLWDFQGFECI 185
Query: 315 STLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSN 374
            T+  H   + ++     G++I+SA  DKT  +W+  +G C                   
Sbjct: 186 RTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYC------------------- 226
Query: 375 TSFASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLD 434
                                 VK+F GH   V  ++ +  G L+ASCS+D T+++W + 
Sbjct: 227 ----------------------VKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVA 264
Query: 435 KDNCVHDLQAHNKEIYTIKWSP----------TGPETSNPNMSLIFILKS---------- 474
              C  +L+ H   +  I W+P          TG ET        F+L            
Sbjct: 265 TKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWD 324
Query: 475 --------TLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPAL 526
                   TL  H   +  + ++  G +ILS   DKT  +WD  + +C +  + H     
Sbjct: 325 VSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVT 384
Query: 527 DVDWQSNTSF-ASCSTDQHIHV 547
            +D+     +  + S DQ + V
Sbjct: 385 SLDFHKTAPYVVTGSVDQTVKV 406

>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1 Length = 345

Iteration: 1
 Score = 90.9 bits (224), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 91/357 (25%), Positives = 147/357 (41%), Gaps = 79/357 (22%)
Query: 276 EVPSNKDVTS--LDWNNNGSFLATGSYDGYARIWTSDGS---LKSTLGQ-HKGPIFALKW 329
            VP++ D     L WN  G+ LA+   D   RIW ++G     KS L + H+  +  + W
Sbjct: 10  RVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAW 69
Query: 330 NKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTSFASCSTDQHIHVC 389
           +  GNY+ SA  D TT IW                       + N     C         
Sbjct: 70  SPCGNYLASASFDATTCIW-----------------------KKNQDDFEC--------- 97
Query: 390 KLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDN---CVHDLQAHN 446
                  V + EGH NEV ++ W P G LLA+CS D ++ +W +D+++   CV  L +H 
Sbjct: 98  -------VTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHT 150
Query: 447 KEIYTIKWSPT----GPETSNPNMSLI------FILKSTLGQHKGPIFALKWNKRGNYIL 496
           +++  + W P+       + +  + L       ++  +TL  H+  +++L ++  G  + 
Sbjct: 151 QDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLA 210
Query: 497 SAGVDKTTIIWD----------AASG-----QCEQQFS-FHSAPALDVDW-QSNTSFASC 539
           S   D+T  IW           A SG     +C    S FHS    D+ W Q   + A+ 
Sbjct: 211 SCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATA 270
Query: 540 STDQHIHVCKLHSDKPVKSFEGHTTGQLVHSYKG-TGGIFEVCWNSRGDKVGASASD 595
             D  I V     + P    +  T     H ++  +  +  V WN +   + AS SD
Sbjct: 271 CGDDAIRV---FQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSD 324

>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249

Iteration: 1
 Score = 84.3 bits (207), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 120/562 (21%), Positives = 209/562 (37%), Gaps = 120/562 (21%)
Query: 121  TLPLWDVERGECLNTLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKG 180
            TL ++  E GE L  +  H + V   AFS D  ++A+ S DK V IW + TG+LVH+Y  
Sbjct: 638  TLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDE 697
Query: 181  TGGIFEVCWNSRGTPPNPPESMEVDASIEI----PQSKATKLIGHESEVFICAWNPVKDF 236
                   C  +  +      +   D  +++     +     + GH + V  C ++P  + 
Sbjct: 698  HSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDEL 757
Query: 237  LASGSGDSTARIWDMTDSTKKD--------------PKELQIVLRHCI-SKGGTE--VPS 279
            LAS S D T R+WD+  + ++               P++++++++ C  S  G +  V +
Sbjct: 758  LASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAA 817
Query: 280  NKDVTSLDWNNNGSF--LATGS-----------YDGYARI---------WTSDGSLK-ST 316
               V   D + +G    + TG            YD  A I         W  D  LK + 
Sbjct: 818  KNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVAD 877
Query: 317  LGQHKGPIFALKWNKRGNYILSAGVDKTTIIWD--------AASGQCEQQFSFHSAPAL- 367
               H   +  + ++  G+  L+A  D+T  +W+        A   + E    F     + 
Sbjct: 878  CRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMV 937
Query: 368  -----------------DVDWQSNTSFASCSTDQH------------IHVCKLHSDKPVK 398
                              +D+      + C    H            I + +L +++   
Sbjct: 938  LAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFS 997
Query: 399  SFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHDLQAHNKEIYTIKWSPTG 458
            S  GH   V  I++   G  L S S+D  +++W+    + V  LQAH + +         
Sbjct: 998  SGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVF-LQAHQETVKD------- 1049
Query: 459  PETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQF 518
                                     F L  + R   +LS   D T  +W+  +G+ E+ F
Sbjct: 1050 -------------------------FRLLQDSR---LLSWSFDGTVKVWNVITGRIERDF 1081
Query: 519  SFHSAPALDVDWQSN-TSFASCSTDQHIHVCKLHSDKPVKSFEGHTTGQLVHSYKGTGGI 577
            + H    L     S+ T F+S S D+   +       P+   +GH  G +  S     GI
Sbjct: 1082 TCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGH-NGCVRCSAFSLDGI 1140
Query: 578  FEVCWNSRGDKVGASASDGSVF 599
                 +  G+    + SDG + 
Sbjct: 1141 LLATGDDNGEIRIWNVSDGQLL 1162

>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 51/238 (21%), Positives = 85/238 (35%), Gaps = 20/238 (8%)
Query: 372 QSNTSFASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIW 431
           Q     ASC  D+ + V K  + + +   + H +EV    +      +A+CS D  +KIW
Sbjct: 625 QDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIW 684
Query: 432 SLDKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILK----------STLGQHKG 481
                  VH    H++++    ++           S  F LK          +T+  H  
Sbjct: 685 DSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTN 744
Query: 482 PIFALKWNKRGNYILSAGVDKTTIIWDAASG------QCEQQFSFHSAPALDVDWQSNTS 535
            +   +++     + S   D T  +WD  S         ++ F     P  DV+      
Sbjct: 745 SVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCC 804
Query: 536 FASCSTDQHIHVCKLHSDKPVKSFEGHTTGQLVHSYKGTGGIFEVCWNSRGDKVGASA 593
             S   D+ I   K      V  F+ HT+G L   + G     + C  S  D +   A
Sbjct: 805 SWSADGDKIIVAAK----NKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIA 858

>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256

Iteration: 1
 Score = 84.3 bits (207), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 120/562 (21%), Positives = 209/562 (37%), Gaps = 120/562 (21%)
Query: 121  TLPLWDVERGECLNTLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKG 180
            TL ++  E GE L  +  H + V   AFS D  ++A+ S DK V IW + TG+LVH+Y  
Sbjct: 645  TLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDE 704
Query: 181  TGGIFEVCWNSRGTPPNPPESMEVDASIEI----PQSKATKLIGHESEVFICAWNPVKDF 236
                   C  +  +      +   D  +++     +     + GH + V  C ++P  + 
Sbjct: 705  HSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDEL 764
Query: 237  LASGSGDSTARIWDMTDSTKKD--------------PKELQIVLRHCI-SKGGTE--VPS 279
            LAS S D T R+WD+  + ++               P++++++++ C  S  G +  V +
Sbjct: 765  LASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAA 824
Query: 280  NKDVTSLDWNNNGSF--LATGS-----------YDGYARI---------WTSDGSLK-ST 316
               V   D + +G    + TG            YD  A I         W  D  LK + 
Sbjct: 825  KNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVAD 884
Query: 317  LGQHKGPIFALKWNKRGNYILSAGVDKTTIIWD--------AASGQCEQQFSFHSAPAL- 367
               H   +  + ++  G+  L+A  D+T  +W+        A   + E    F     + 
Sbjct: 885  CRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMV 944
Query: 368  -----------------DVDWQSNTSFASCSTDQH------------IHVCKLHSDKPVK 398
                              +D+      + C    H            I + +L +++   
Sbjct: 945  LAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFS 1004
Query: 399  SFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHDLQAHNKEIYTIKWSPTG 458
            S  GH   V  I++   G  L S S+D  +++W+    + V  LQAH + +         
Sbjct: 1005 SGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVF-LQAHQETVKD------- 1056
Query: 459  PETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQF 518
                                     F L  + R   +LS   D T  +W+  +G+ E+ F
Sbjct: 1057 -------------------------FRLLQDSR---LLSWSFDGTVKVWNVITGRIERDF 1088
Query: 519  SFHSAPALDVDWQSN-TSFASCSTDQHIHVCKLHSDKPVKSFEGHTTGQLVHSYKGTGGI 577
            + H    L     S+ T F+S S D+   +       P+   +GH  G +  S     GI
Sbjct: 1089 TCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGH-NGCVRCSAFSLDGI 1147
Query: 578  FEVCWNSRGDKVGASASDGSVF 599
                 +  G+    + SDG + 
Sbjct: 1148 LLATGDDNGEIRIWNVSDGQLL 1169

>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 51/238 (21%), Positives = 85/238 (35%), Gaps = 20/238 (8%)
Query: 372 QSNTSFASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIW 431
           Q     ASC  D+ + V K  + + +   + H +EV    +      +A+CS D  +KIW
Sbjct: 632 QDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIW 691
Query: 432 SLDKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILK----------STLGQHKG 481
                  VH    H++++    ++           S  F LK          +T+  H  
Sbjct: 692 DSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTN 751
Query: 482 PIFALKWNKRGNYILSAGVDKTTIIWDAASG------QCEQQFSFHSAPALDVDWQSNTS 535
            +   +++     + S   D T  +WD  S         ++ F     P  DV+      
Sbjct: 752 SVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCC 811
Query: 536 FASCSTDQHIHVCKLHSDKPVKSFEGHTTGQLVHSYKGTGGIFEVCWNSRGDKVGASA 593
             S   D+ I   K      V  F+ HT+G L   + G     + C  S  D +   A
Sbjct: 812 SWSADGDKIIVAAK----NKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIA 865

>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393

Iteration: 1
 Score = 82.8 bits (203), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 89/357 (24%), Positives = 138/357 (38%), Gaps = 68/357 (19%)
Query: 126 DVERGECLNTLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKGTGG-- 183
           DVE  + L+    HT  V  V FS DG++LA+G  +K   ++    G LV          
Sbjct: 54  DVELHKSLD----HTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAAN 108
Query: 184 -----------------IFEVCWNSRGTPPNPPESMEVDASIEIPQSKATKLI-GHESEV 225
                            I  VC++  G          +    +I   K   ++ GHE ++
Sbjct: 109 KDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDI 168
Query: 226 FICAWNPVKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTS 285
           +   + P  D L SGSGD T RIWD+        +  Q  L   I  G T V  +     
Sbjct: 169 YSLDYFPSGDKLVSGSGDRTVRIWDL--------RTGQCSLTLSIEDGVTTVAVSP---- 216
Query: 286 LDWNNNGSFLATGSYDGYARIWTSD-GSLKSTLGQ-------HKGPIFALKWNKRGNYIL 337
                +G ++A GS D   R+W S+ G L   L         HK  ++++ + + G  ++
Sbjct: 217 ----GDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVV 272
Query: 338 SAGVDKTTIIWDAA------------SGQCEQQFSFHSAPALDVDWQSNTSFA-SCSTDQ 384
           S  +D++  +W+              SG CE  +  H    L V    N  +  S S D+
Sbjct: 273 SGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDR 332
Query: 385 HIHVCKLHSDKPVKSFEGHTNEV------NAIKWDPQGLLLASCSDDMTLKIWSLDK 435
            +      S  P+   +GH N V      N     P+  + A+ S D   +IW   K
Sbjct: 333 GVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKK 389

>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393

Iteration: 1
 Score = 72.4 bits (176), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 80/352 (22%), Positives = 141/352 (40%), Gaps = 59/352 (16%)
Query: 197 NPPESMEVDASIEIPQSKATKLIGHESEVFICAWNPVKDFLASGSGDSTARIWDMTD--- 253
           NP    E+D  +        K + H S V    ++   ++LA+G  + T +++ ++D   
Sbjct: 46  NPALPREIDVELH-------KSLDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSL 97
Query: 254 --------STKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFLATGSYDGYAR 305
                   +  KDP+ L            +   S+  + S+ ++ +G FLATG+ D   R
Sbjct: 98  VARLSDDSAANKDPENLNT---------SSSPSSDLYIRSVCFSPDGKFLATGAEDRLIR 148
Query: 306 IW-TSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHS- 363
           IW   +  +   L  H+  I++L +   G+ ++S   D+T  IWD  +GQC    S    
Sbjct: 149 IWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDG 208
Query: 364 APALDVDWQSNTSFASCSTDQHIHVCKLHS-------DKPVKSFEGHTNEVNAIKWDPQG 416
              + V        A+ S D+ + V    +       D   +S  GH + V ++ +   G
Sbjct: 209 VTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDG 268
Query: 417 LLLASCSDDMTLKIWSLDKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTL 476
             + S S D ++K+W+L          A+NK            ++  PN     +   T 
Sbjct: 269 QSVVSGSLDRSVKLWNLQ--------NANNKS-----------DSKTPNSGTCEV---TY 306
Query: 477 GQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDV 528
             HK  + ++   +   YILS   D+  + WD  SG        H    + V
Sbjct: 307 IGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISV 358

>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex Length = 445

Iteration: 1
 Score = 79.7 bits (195), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 55/234 (23%), Positives = 111/234 (47%), Gaps = 14/234 (5%)
Query: 292 GSFLATGSYDGYARIWTS-DGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDA 350
           G+ + +GS D   ++W++  G    TL  H G +++ +   R N I+S   D+T  +W+A
Sbjct: 129 GNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQ--MRDNIIISGSTDRTLKVWNA 186
Query: 351 ASGQCEQQFSFHSAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAI 410
            +G+C      H++    +         S S D  + V  + + + +    GH   V  +
Sbjct: 187 ETGECIHTLYGHTSTVRCMHLHEK-RVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCV 245
Query: 411 KWDPQGLLLASCSDDMTLKIWSLDKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSL-I 469
           ++D  G  + S + D  +K+W  + + C+H LQ H   +Y++++      + + + S+ +
Sbjct: 246 QYD--GRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRV 303
Query: 470 FILKS-----TLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQF 518
           + +++     TL  H+     ++   + N ++S   D T  IWD  +GQC Q  
Sbjct: 304 WDVETGNCIHTLTGHQSLTSGMEL--KDNILVSGNADSTVKIWDIKTGQCLQTL 355

>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1 Length = 330

Iteration: 1
 Score = 76.6 bits (187), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 84/320 (26%), Positives = 135/320 (42%), Gaps = 67/320 (20%)
Query: 137 TRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKGTGGIFEVCWNSRGTPP 196
           T H + + SVA+ P    LA+GSFD  V IW+                       +    
Sbjct: 55  TAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWA-----------------------KEESA 91
Query: 197 NPPESMEVDASIEIPQSKATKLIGHESEVFICAWNPVKDFLASGSGDSTARIWDMTDSTK 256
           +    M++ A IE          GHE+EV   AW+    +LA+ S D +  IW+ TD + 
Sbjct: 92  DRTFEMDLLAIIE----------GHENEVKGVAWSNDGYYLATCSRDKSVWIWE-TDESG 140
Query: 257 KDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFLATGSYDGYARIWTS---DGSL 313
           ++ + + ++  H           ++DV  + W+ + + LA+ SYD   RIW     D   
Sbjct: 141 EEYECISVLQEH-----------SQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWEC 189
Query: 314 KSTLGQHKGPIFALKWNK-RGNYILSAGVDKTTI-IW--------DAASGQCEQQF-SFH 362
            + L  H+G +++  ++K  G + L +G D +T+ +W        D     CE      H
Sbjct: 190 VAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVH 249
Query: 363 SAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEGH-----TNEVNAIKW-DPQG 416
                +V W  N   AS   D  + V +   D   K F          E+N +KW +  G
Sbjct: 250 KRQVYNVAWGFNGLIASVGADGVLAVYE-EVDGEWKVFAKRALCHGVYEINVVKWLELNG 308
Query: 417 -LLLASCSDDMTLKIWSLDK 435
             +LA+  DD  +  WSL+K
Sbjct: 309 KTILATGGDDGIVNFWSLEK 328

>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1 Length = 330

Iteration: 1
 Score = 62.0 bits (149), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 73/278 (26%), Positives = 116/278 (41%), Gaps = 40/278 (14%)
Query: 236 FLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFL 295
            LA+GS D   ++     S K D   L  VL         E    K + S+ W  + S L
Sbjct: 26  ILATGSTDRKIKL----VSVKYDDFTLIDVL--------DETAHKKAIRSVAWRPHTSLL 73
Query: 296 ATGSYDGYARIWTSDGS--------LKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTII 347
           A GS+D    IW  + S        L + +  H+  +  + W+  G Y+ +   DK+  I
Sbjct: 74  AAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWI 133
Query: 348 WDA-ASG---QCEQQFSFHSAPALDVDWQ-SNTSFASCSTDQHIHVCKLHSD--KPVKSF 400
           W+   SG   +C      HS     V W  S    AS S D  + + K + D  + V   
Sbjct: 134 WETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVL 193
Query: 401 EGHTNEVNAIKWDP-QGLL-LASCSDDMTLKIWSL---DKDN-----CVHDL-QAHNKEI 449
            GH   V +  +D  +G+  L S SDD T+++W     D+D+     C   L   H +++
Sbjct: 194 NGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQV 253
Query: 450 YTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALK 487
           Y + W   G   S     ++ + +   G+ K  +FA +
Sbjct: 254 YNVAWGFNGLIASVGADGVLAVYEEVDGEWK--VFAKR 289

>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1 Length = 330

Iteration: 1
 Score = 54.7 bits (130), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 44/168 (26%), Positives = 73/168 (43%), Gaps = 25/168 (14%)
Query: 400 FEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKD----NCVHDLQAHNKEIYTIKWS 455
            EGH NEV  + W   G  LA+CS D ++ IW  D+      C+  LQ H++++  + W 
Sbjct: 103 IEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWH 162
Query: 456 PTGPETSNPNM-SLIFILK---------STLGQHKGPIFALKWNK-RGNYILSAGVDKTT 504
           P+    ++ +    + I K         + L  H+G +++  ++K  G + L +G D +T
Sbjct: 163 PSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDST 222
Query: 505 I-IW--------DAASGQCEQQF-SFHSAPALDVDWQSNTSFASCSTD 542
           + +W        D     CE      H     +V W  N   AS   D
Sbjct: 223 VRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNGLIASVGAD 270

>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS CRYSTAL Structure Length = 354

Iteration: 1
 Score = 73.2 bits (178), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 79/328 (24%), Positives = 140/328 (42%), Gaps = 42/328 (12%)
Query: 203 EVDASIEIPQSKATKLIGHESEVFICAWNPVKDFLASGSGDSTARIWDMTDSTKKDPKEL 262
            V+A  +        L GH ++V    W   K  + S S D    +WD   + K+     
Sbjct: 45  RVEALGQFVMKTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKE----- 99
Query: 263 QIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFLATGSYDGYARIW--TSD-----GSLKS 315
                H ++   T V       +  +  +G  +A G  D    ++  T D      + K 
Sbjct: 100 -----HAVTMPCTWV------MACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKKK 148
Query: 316 TLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDW---Q 372
           ++  H   + A  +      IL+A  D T  +WD  SGQ  Q F  H A  L +D    +
Sbjct: 149 SVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSE 208
Query: 373 SNTSFASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWS 432
           +  +F S   D+   V  + S + V++FE H ++VN++++ P G   AS SDD T +++ 
Sbjct: 209 TGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYD 268
Query: 433 LDKDNCVHDLQAHNKE--IY---TIKWSPTG----PETSNPNMSLIFILK----STLGQH 479
           L  D    ++  ++KE  I+   ++ +S +G       ++  +++  +LK    S L  H
Sbjct: 269 LRAD---REVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGH 325
Query: 480 KGPIFALKWNKRGNYILSAGVDKTTIIW 507
           +  +  L+ +  G    S   D T  +W
Sbjct: 326 ENRVSTLRVSPDGTAFCSGSWDHTLRVW 353

>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS CRYSTAL Structure Length = 354

Iteration: 1
 Score = 66.6 bits (161), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 56/254 (22%), Positives = 94/254 (37%), Gaps = 40/254 (15%)
Query: 314 KSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQ- 372
           + TL  H   +  + W K    I+S+  D   I+WD+ +   E   +      +   +  
Sbjct: 57  RRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAP 116
Query: 373 SNTSFASCSTDQHIHVCKLHSDK------PVKSFEGHTNEVNAIKWDPQGLLLASCSDDM 426
           S  + A    D    V  L  DK        KS   HTN ++A  +    + + + S D 
Sbjct: 117 SGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDG 176
Query: 427 TLKIWSLDKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFAL 486
           T  +W ++    +     H  ++  +  +P+                             
Sbjct: 177 TCALWDVESGQLLQSFHGHGADVLCLDLAPS----------------------------- 207
Query: 487 KWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQ-SNTSFASCSTDQHI 545
              + GN  +S G DK  ++WD  SGQC Q F  H +    V +  S  +FAS S D   
Sbjct: 208 ---ETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATC 264
Query: 546 HVCKLHSDKPVKSF 559
            +  L +D+ V  +
Sbjct: 265 RLYDLRADREVAIY 278

>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS CRYSTAL Structure Length = 354

Iteration: 1
 Score = 54.7 bits (130), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 48/202 (23%), Positives = 81/202 (40%), Gaps = 19/202 (9%)
Query: 395 KPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHDLQAHNKEIYTIKW 454
           K  ++ +GH N+V  + W      + S S D  + +W     N  H +      +    +
Sbjct: 55  KTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAY 114
Query: 455 SPTG---------------PETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAG 499
           +P+G               P T + N ++    K ++  H   + A  +      IL+A 
Sbjct: 115 APSGCAIACGGLDNKCSVYPLTFDKNENMA-AKKKSVAMHTNYLSACSFTNSDMQILTAS 173
Query: 500 VDKTTIIWDAASGQCEQQFSFHSAPALDVDW---QSNTSFASCSTDQHIHVCKLHSDKPV 556
            D T  +WD  SGQ  Q F  H A  L +D    ++  +F S   D+   V  + S + V
Sbjct: 174 GDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCV 233
Query: 557 KSFEGHTTGQLVHSYKGTGGIF 578
           ++FE H +      Y  +G  F
Sbjct: 234 QAFETHESDVNSVRYYPSGDAF 255

>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55 Length = 432

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 74/303 (24%), Positives = 114/303 (37%), Gaps = 78/303 (25%)
Query: 217 KLIGHESEVFICAWNP-VKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGT 275
           +L GH+ E +  +WNP +  +L S S D T  +WD+  +    PKE +++    I  G T
Sbjct: 178 RLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINAT----PKEHRVIDAKNIFTGHT 233
Query: 276 EVPSNKDVTSLDWNN-NGSFLATGSYDGYARIWTSDGSLKS----TLGQHKGPIFALKWN 330
            V     V  + W+  + S   + + D    IW +  +  S    T+  H   +  L +N
Sbjct: 234 AV-----VEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFN 288
Query: 331 KRGNYILSAG-VDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTSFASCSTDQHIHVC 389
               +IL+ G  DKT  +WD  + +                                   
Sbjct: 289 PYSEFILATGSADKTVALWDLRNLKL---------------------------------- 314
Query: 390 KLHSDKPVKSFEGHTNEVNAIKWDPQG-LLLASCSDDMTLKIWSLDKDNCVHDLQAHNKE 448
           KLHS      FE H +E+  ++W P    +LAS   D  L +W L K            E
Sbjct: 315 KLHS------FESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIG----------E 358
Query: 449 IYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYIL-SAGVDKTTIIW 507
             + + +  GP        L+FI     G H   I    WN    +I+ S   D    +W
Sbjct: 359 EQSTEDAEDGPP------ELLFI----HGGHTAKISDFSWNPNEPWIICSVSEDNIMQVW 408
Query: 508 DAA 510
             A
Sbjct: 409 QMA 411

>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3 Length = 422

Iteration: 1
 Score = 57.8 bits (138), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 74/303 (24%), Positives = 114/303 (37%), Gaps = 78/303 (25%)
Query: 217 KLIGHESEVFICAWNP-VKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGT 275
           +L GH+ E +  +WNP +  +L S S D T  +WD+  +    PKE +++    I  G T
Sbjct: 180 RLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINAT----PKEHRVIDAKNIFTGHT 235
Query: 276 EVPSNKDVTSLDWNN-NGSFLATGSYDGYARIWTSDGSLKS----TLGQHKGPIFALKWN 330
            V     V  + W+  + S   + + D    IW +  +  S    T+  H   +  L +N
Sbjct: 236 AV-----VEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFN 290
Query: 331 KRGNYILSAG-VDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTSFASCSTDQHIHVC 389
               +IL+ G  DKT  +WD  + +                                   
Sbjct: 291 PYSEFILATGSADKTVALWDLRNLKL---------------------------------- 316
Query: 390 KLHSDKPVKSFEGHTNEVNAIKWDPQG-LLLASCSDDMTLKIWSLDKDNCVHDLQAHNKE 448
           KLHS      FE H +E+  ++W P    +LAS   D  L +W L K            E
Sbjct: 317 KLHS------FESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIG----------E 360
Query: 449 IYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYIL-SAGVDKTTIIW 507
             + + +  GP        L+FI     G H   I    WN    +I+ S   D    +W
Sbjct: 361 EQSTEDAEDGPP------ELLFI----HGGHTAKISDFSWNPNEPWIICSVSEDNIMQVW 410
Query: 508 DAA 510
             A
Sbjct: 411 QMA 413

>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide Length = 430

Iteration: 1
 Score = 68.6 bits (166), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 66/256 (25%), Positives = 101/256 (39%), Gaps = 62/256 (24%)
Query: 317 LGQHKGPIFALKWNKRGN-YILSAGVDKTTIIWDAASGQCEQQ-------FSFHSAPALD 368
           L  H+   + L WN   N Y+LSA  D T  +WD  +   E +       F+ H+A   D
Sbjct: 177 LRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVED 236
Query: 369 VDWQ--SNTSFASCSTDQHIHVCKLHSD---KPVKSFEGHTNEVNAIKWDPQG-LLLASC 422
           V W     + F S + DQ + +    ++   KP  + + HT EVN + ++P    +LA+ 
Sbjct: 237 VAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATG 296
Query: 423 SDDMTLKIWSLDKDNC-VHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKG 481
           S D T+ +W L      +H  ++H  EI+ ++WSP                      H  
Sbjct: 297 SADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSP----------------------HNE 334
Query: 482 PIFALKWNKRGNYILSAGVDKTTIIW------------DAASGQCEQQFSF--HSAPALD 527
            I A           S+G D+   +W            DA  G  E  F    H+A   D
Sbjct: 335 TILA-----------SSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISD 383
Query: 528 VDWQSNTSFASCSTDQ 543
             W  N  +  CS  +
Sbjct: 384 FSWNPNEPWIICSVSE 399

>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 380

Iteration: 1
 Score = 68.6 bits (166), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 78/330 (23%), Positives = 137/330 (41%), Gaps = 60/330 (18%)
Query: 218 LIGHESEVFICAWNPVKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEV 277
           L GH  +V+   W P K+++ S S D    +W+   S K    +L     HC        
Sbjct: 62  LQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKL-----HC-------- 108
Query: 278 PSNKDVTSLDWNNNGSFLATGSYDGYARIWT------SDGSL--KSTLGQHKGPIFALKW 329
                V    +  NG  +A G  D    I+        DG++     L  HKG   + ++
Sbjct: 109 ---PWVMECAFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQY 165
Query: 330 --NKRGNYILSAGVDKTTIIWDAASGQCEQQF-----SFHSAPALDVDWQSNTS--FASC 380
             ++    I  +G D+T ++WD  +GQ    F     S H+A  L +   S  +  F S 
Sbjct: 166 VPDQETRLITGSG-DQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISG 224
Query: 381 STDQHIHVCKLH-SDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCV 439
           S D  + +  L  + + V+++ GH  ++N++K+ P G    + SDD T +++ +      
Sbjct: 225 SCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTG--- 281
Query: 440 HDLQAHNKE----------IYTIKWSPTG----PETSNPN--------MSLIFILKSTLG 477
           H LQ +N+E          + ++ +S +G       SN +          ++  L +   
Sbjct: 282 HQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQN 341
Query: 478 QHKGPIFALKWNKRGNYILSAGVDKTTIIW 507
            H+G I  L  +  G+ + +   DK   IW
Sbjct: 342 SHEGRISCLGLSSDGSALCTGSWDKNLKIW 371

>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 380

Iteration: 1
 Score = 46.6 bits (109), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 51/225 (22%), Positives = 93/225 (41%), Gaps = 37/225 (16%)
Query: 398 KSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHDLQAHNKEIYTIKWSPT 457
           ++ +GH+ +V ++ W P+   + S S D  L +W+       H ++ H   +    ++P 
Sbjct: 60  RTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPN 119
Query: 458 GPETSNPNM---SLIFILKS------------TLGQHKGPIFALKW--NKRGNYILSAGV 500
           G   +   +     IF L S             L  HKG   + ++  ++    I  +G 
Sbjct: 120 GQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSG- 178
Query: 501 DKTTIIWDAASGQCEQQF-----SFHSAPALDVDWQSNTS--FASCSTDQHIHVCKLH-S 552
           D+T ++WD  +GQ    F     S H+A  L +   S  +  F S S D  + +  L  +
Sbjct: 179 DQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRIT 238
Query: 553 DKPVKSFEGHTTGQLVHSYKGTGGIFEVCWNSRGDKVGASASDGS 597
            + V+++ GH            G I  V +   G + G  + DG+
Sbjct: 239 SRAVRTYHGH-----------EGDINSVKFFPDGQRFGTGSDDGT 272

>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4 Length = 425

Iteration: 1
 Score = 67.8 bits (164), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 66/256 (25%), Positives = 101/256 (39%), Gaps = 62/256 (24%)
Query: 317 LGQHKGPIFALKWNKR-GNYILSAGVDKTTIIWDAASGQCEQQ-------FSFHSAPALD 368
           L  H+   + L WN     ++LSA  D T  +WD ++   E +       F+ H+A   D
Sbjct: 173 LRGHQKEGYGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVED 232
Query: 369 VDWQ--SNTSFASCSTDQHIHVCKLHSD---KPVKSFEGHTNEVNAIKWDPQG-LLLASC 422
           V W     + F S + DQ + +    S+   KP  S + HT EVN + ++P    +LA+ 
Sbjct: 233 VSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATG 292
Query: 423 SDDMTLKIWSLDKDNC-VHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKG 481
           S D T+ +W L      +H  ++H  EI+ ++WSP                      H  
Sbjct: 293 SADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSP----------------------HNE 330
Query: 482 PIFALKWNKRGNYILSAGVDKTTIIW------------DAASGQCEQQFSF--HSAPALD 527
            I A           S+G D+   +W            DA  G  E  F    H+A   D
Sbjct: 331 TILA-----------SSGTDRRLNVWDLSKIGEEQSPEDAEDGPPELLFIHGGHTAKISD 379
Query: 528 VDWQSNTSFASCSTDQ 543
             W  N  +  CS  +
Sbjct: 380 FSWNPNEPWVICSVSE 395

>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414

Iteration: 1
 Score = 67.4 bits (163), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 67/256 (26%), Positives = 99/256 (38%), Gaps = 62/256 (24%)
Query: 317 LGQHKGPIFALKWNKR-GNYILSAGVDKTTIIWDAASGQCEQQ-------FSFHSAPALD 368
           L  H+   + L WN     ++LSA  D T  +WD  +G  E +       F+ HSA   D
Sbjct: 175 LRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVED 234
Query: 369 VDWQ--SNTSFASCSTDQHIHVCKLHSD---KPVKSFEGHTNEVNAIKWDPQG-LLLASC 422
           V W     + F S + DQ + +    S+   KP    + HT EVN + ++P    +LA+ 
Sbjct: 235 VAWHLLHESLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATG 294
Query: 423 SDDMTLKIWSLDKDNC-VHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKG 481
           S D T+ +W L      +H  ++H  EI+ + WSP                      H  
Sbjct: 295 SADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSP----------------------HNE 332
Query: 482 PIFALKWNKRGNYILSAGVDKTTIIW------------DAASGQCEQQFSF--HSAPALD 527
            I A           S+G D+   +W            DA  G  E  F    H+A   D
Sbjct: 333 TILA-----------SSGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGGHTAKISD 381
Query: 528 VDWQSNTSFASCSTDQ 543
             W  N  +  CS  +
Sbjct: 382 FSWNPNEPWVICSVSE 397

>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414

Iteration: 1
 Score = 67.0 bits (162), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 67/256 (26%), Positives = 99/256 (38%), Gaps = 62/256 (24%)
Query: 317 LGQHKGPIFALKWNKR-GNYILSAGVDKTTIIWDAASGQCEQQ-------FSFHSAPALD 368
           L  H+   + L WN     ++LSA  D T  +WD  +G  E +       F+ HSA   D
Sbjct: 175 LRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVED 234
Query: 369 VDWQ--SNTSFASCSTDQHIHVCKLHSD---KPVKSFEGHTNEVNAIKWDPQG-LLLASC 422
           V W     + F S + DQ + +    S+   KP    + HT EVN + ++P    +LA+ 
Sbjct: 235 VAWHLLHESLFGSVADDQKLXIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATG 294
Query: 423 SDDMTLKIWSLDKDNC-VHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKG 481
           S D T+ +W L      +H  ++H  EI+ + WSP                      H  
Sbjct: 295 SADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSP----------------------HNE 332
Query: 482 PIFALKWNKRGNYILSAGVDKTTIIW------------DAASGQCEQQFSF--HSAPALD 527
            I A           S+G D+   +W            DA  G  E  F    H+A   D
Sbjct: 333 TILA-----------SSGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGGHTAKISD 381
Query: 528 VDWQSNTSFASCSTDQ 543
             W  N  +  CS  +
Sbjct: 382 FSWNPNEPWVICSVSE 397

>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN ALLOSTERIC Inhibitor Scf-I2 Length = 464

Iteration: 1
 Score = 66.2 bits (160), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 77/311 (24%), Positives = 132/311 (42%), Gaps = 47/311 (15%)
Query: 283 VTSLDWNNNGSFLATGSYDGYARIWTS-DGSLKSTLGQHKGPIFALKWNKRGNYILSAGV 341
           +T L + +N  ++ TG+ D   R++ S +      L  H G ++ALK+   G  ++S   
Sbjct: 125 ITCLQFEDN--YVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKY-AHGGILVSGST 181
Query: 342 DKTTIIWDAASGQCEQQFSFHSAPA--LD-VDWQSNTSFASCSTDQHIHVCKL------- 391
           D+T  +WD   G C   F  H++    LD V++++     + S D  +HV KL       
Sbjct: 182 DRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVP 241
Query: 392 ----HSDKP------------VKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDK 435
                 D P            V    GH   V  +     G ++ S S D TL +W + +
Sbjct: 242 DHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVS--GHGNIVVSGSYDNTLIVWDVAQ 299
Query: 436 DNCVHDLQAHNKEIYTIKWSPTGPETSNPNM-SLIFI-------LKSTLGQHKGPIFALK 487
             C++ L  H   IY+  +        + +M + I I       L  TL  H   +  L+
Sbjct: 300 MKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLR 359
Query: 488 WNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFH--SAPALDVDWQSNTSFASCSTDQHI 545
            + +  +++SA  D +   WDA      ++FS+H  +  A+   + S+    S S +Q  
Sbjct: 360 LSDK--FLVSAAADGSIRGWDA--NDYSRKFSYHHTNLSAITTFYVSDNILVSGSENQ-F 414
Query: 546 HVCKLHSDKPV 556
           ++  L S K V
Sbjct: 415 NIYNLRSGKLV 425

>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 318

Iteration: 1
 Score = 65.1 bits (157), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 60/254 (23%), Positives = 103/254 (40%), Gaps = 40/254 (15%)
Query: 276 EVPSNKDVTSLDWNNNGSFLATGSYDGYARIWTSDGSLKSTLGQHKGP---IFALKWNKR 332
           E+ ++  +  +DW++ G+ LA  + D    +W++       L Q + P   I ++ W K 
Sbjct: 21  EIRNDYYLNLVDWSS-GNVLAV-ALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKE 78
Query: 333 GNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTSFASCSTDQHIHVCKLH 392
           GNY+          +WD    +  +  + HSA    + W S    +S S   HIH   + 
Sbjct: 79  GNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYI-LSSGSRSGHIHHHDVR 137
Query: 393 -SDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHDLQAHNKEIYT 451
            ++  V +  GH+ EV  ++W P G  LAS  +D  + +W                    
Sbjct: 138 VAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVW-------------------- 177
Query: 452 IKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAG---VDKTTIIWD 508
               P+ P          ++   T  QH+G + A+ W    + +L+ G    D+   IW+
Sbjct: 178 ----PSAPGEGG------WVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWN 227
Query: 509 AASGQCEQQFSFHS 522
             SG C      HS
Sbjct: 228 VCSGACLSAVDAHS 241

>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 318

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/212 (19%), Positives = 93/212 (43%), Gaps = 18/212 (8%)
Query: 369 VDWQSNTSFASCSTDQHIHVCKLHSDKPVK--SFEGHTNEVNAIKWDPQGLLLASCSDDM 426
           VDW S    A  + D  +++    S   ++    E     ++++ W  +G  LA  +   
Sbjct: 31  VDWSSGNVLA-VALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSA 89
Query: 427 TLKIWSLDKDNCVHDLQAHNKEIYTIKWSP----TGPETSNPNMSLIFILK---STLGQH 479
            +++W + +   + ++ +H+  + ++ W+     +G  + + +   + + +   +TL  H
Sbjct: 90  EVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGH 149
Query: 480 KGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCE----QQFSFHSAPALDV---DWQS 532
              +  L+W   G ++ S G D    +W +A G+      Q F+ H      V    WQS
Sbjct: 150 SQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQS 209
Query: 533 NT-SFASCSTDQHIHVCKLHSDKPVKSFEGHT 563
           N  +    ++D+HI +  + S   + + + H+
Sbjct: 210 NVLATGGGTSDRHIRIWNVCSGACLSAVDAHS 241

>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite Degron Recognition By ApcC. Length = 431

Iteration: 1
 Score = 65.1 bits (157), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 60/254 (23%), Positives = 103/254 (40%), Gaps = 40/254 (15%)
Query: 276 EVPSNKDVTSLDWNNNGSFLATGSYDGYARIWTSDGSLKSTLGQHKGP---IFALKWNKR 332
           E+ ++  +  +DW++ G+ LA  + D    +W++       L Q + P   I ++ W K 
Sbjct: 112 EIRNDYYLNLVDWSS-GNVLAV-ALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKE 169
Query: 333 GNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTSFASCSTDQHIHVCKLH 392
           GNY+          +WD    +  +  + HSA    + W S    +S S   HIH   + 
Sbjct: 170 GNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYI-LSSGSRSGHIHHHDVR 228
Query: 393 -SDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHDLQAHNKEIYT 451
            ++  V +  GH+ EV  ++W P G  LAS  +D  + +W                    
Sbjct: 229 VAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVW-------------------- 268
Query: 452 IKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAG---VDKTTIIWD 508
               P+ P          ++   T  QH+G + A+ W    + +L+ G    D+   IW+
Sbjct: 269 ----PSAPGEGG------WVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWN 318
Query: 509 AASGQCEQQFSFHS 522
             SG C      HS
Sbjct: 319 VCSGACLSAVDAHS 332

>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 420

Iteration: 1
 Score = 65.1 bits (157), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 60/254 (23%), Positives = 103/254 (40%), Gaps = 40/254 (15%)
Query: 276 EVPSNKDVTSLDWNNNGSFLATGSYDGYARIWTSDGSLKSTLGQHKGP---IFALKWNKR 332
           E+ ++  +  +DW++ G+ LA  + D    +W++       L Q + P   I ++ W K 
Sbjct: 101 EIRNDYYLNLVDWSS-GNVLAV-ALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKE 158
Query: 333 GNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTSFASCSTDQHIHVCKLH 392
           GNY+          +WD    +  +  + HSA    + W S    +S S   HIH   + 
Sbjct: 159 GNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYI-LSSGSRSGHIHHHDVR 217
Query: 393 -SDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHDLQAHNKEIYT 451
            ++  V +  GH+ EV  ++W P G  LAS  +D  + +W                    
Sbjct: 218 VAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVW-------------------- 257
Query: 452 IKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAG---VDKTTIIWD 508
               P+ P          ++   T  QH+G + A+ W    + +L+ G    D+   IW+
Sbjct: 258 ----PSAPGEGG------WVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWN 307
Query: 509 AASGQCEQQFSFHS 522
             SG C      HS
Sbjct: 308 VCSGACLSAVDAHS 321

>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P63 Length = 319

Iteration: 1
 Score = 64.7 bits (156), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 56/236 (23%), Positives = 103/236 (43%), Gaps = 33/236 (13%)
Query: 235 DFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSF 294
           + L S S D T   W +T     D ++  + +R    KG + +  +  +T+     +G++
Sbjct: 31  NLLLSASRDKTLISWKLT----GDDQKFGVPVRSF--KGHSHIVQDCTLTA-----DGAY 79
Query: 295 LATGSYDGYARIW-TSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASG 353
             + S+D   R+W  + G        HK  + ++  +K+ + I+S   DKT  +W    G
Sbjct: 80  ALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVW-TIKG 138
Query: 354 QCEQQFSFHSAPALDVDWQSNTSFA--SCSTDQHIHVCKLHSDKPVKS-----------F 400
           QC      H+      DW S         + D  + +    +DK VK+           F
Sbjct: 139 QCLATLLGHN------DWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADF 192
Query: 401 EGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHDLQAHNKEIYTIKWSP 456
            GH + +N +   P G L+AS   D  + +W+L     ++ L A + E++++ +SP
Sbjct: 193 IGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQD-EVFSLAFSP 247

>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P63 Length = 319

Iteration: 1
 Score = 61.2 bits (147), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 56/229 (24%), Positives = 104/229 (45%), Gaps = 24/229 (10%)
Query: 313 LKSTLGQHKGPIFALKWNK-RGNYILSAGVDKTTIIW-----DAASGQCEQQFSFHSAPA 366
           L+ TL  H G + +L  +  + N +LSA  DKT I W     D   G   + F  HS   
Sbjct: 9   LRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIV 68
Query: 367 LDVDWQSNTSFA-SCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDD 425
            D    ++ ++A S S D+ + +  + + +  + F GH ++V ++  D +  ++ S S D
Sbjct: 69  QDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRD 128
Query: 426 MTLKIWSLDKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLI---------------F 470
            T+K+W++ K  C+  L  HN  +  ++  P   +  + ++++I               F
Sbjct: 129 KTIKVWTI-KGQCLATLLGHNDWVSQVRVVPN-EKADDDSVTIISAGNDKMVKAWNLNQF 186
Query: 471 ILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFS 519
            +++    H   I  L  +  G  I SAG D   ++W+ A+ +     S
Sbjct: 187 QIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLS 235

>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P21 Length = 319

Iteration: 1
 Score = 64.7 bits (156), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 56/236 (23%), Positives = 103/236 (43%), Gaps = 33/236 (13%)
Query: 235 DFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSF 294
           + L S S D T   W +T     D ++  + +R    KG + +  +  +T+     +G++
Sbjct: 31  NLLLSASRDKTLISWKLT----GDDQKFGVPVRSF--KGHSHIVQDCTLTA-----DGAY 79
Query: 295 LATGSYDGYARIW-TSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASG 353
             + S+D   R+W  + G        HK  + ++  +K+ + I+S   DKT  +W    G
Sbjct: 80  ALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVW-TIKG 138
Query: 354 QCEQQFSFHSAPALDVDWQSNTSFA--SCSTDQHIHVCKLHSDKPVKS-----------F 400
           QC      H+      DW S         + D  + +    +DK VK+           F
Sbjct: 139 QCLATLLGHN------DWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADF 192
Query: 401 EGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHDLQAHNKEIYTIKWSP 456
            GH + +N +   P G L+AS   D  + +W+L     ++ L A + E++++ +SP
Sbjct: 193 IGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQD-EVFSLAFSP 247

>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P21 Length = 319

Iteration: 1
 Score = 61.2 bits (147), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 69/312 (22%), Positives = 131/312 (41%), Gaps = 36/312 (11%)
Query: 313 LKSTLGQHKGPIFALKWNK-RGNYILSAGVDKTTIIW-----DAASGQCEQQFSFHSAPA 366
           L+ TL  H G + +L  +  + N +LSA  DKT I W     D   G   + F  HS   
Sbjct: 9   LRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIV 68
Query: 367 LDVDWQSNTSFA-SCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDD 425
            D    ++ ++A S S D+ + +  + + +  + F GH ++V ++  D +  ++ S S D
Sbjct: 69  QDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRD 128
Query: 426 MTLKIWSLDKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLI---------------F 470
            T+K+W++ K  C+  L  HN  +  ++  P   +  + ++++I               F
Sbjct: 129 KTIKVWTI-KGQCLATLLGHNDWVSQVRVVPN-EKADDDSVTIISAGNDKMVKAWNLNQF 186
Query: 471 ILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDW 530
            +++    H   I  L  +  G  I SAG D   ++W+ A+ +     S        + +
Sbjct: 187 QIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQD-EVFSLAF 245
Query: 531 QSNTSFASCSTDQHIHVCKLHSDKPVK----SFEGHTTGQLVHSYKGTGGIFEVCWNSRG 586
             N  + + +T   I V  L     V      F G++     H+         + W++ G
Sbjct: 246 SPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSAAAEPHA-------VSLAWSADG 298
Query: 587 DKVGASASDGSV 598
             + A  +D  +
Sbjct: 299 QTLFAGYTDNVI 310

>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 319

Iteration: 1
 Score = 64.7 bits (156), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 56/236 (23%), Positives = 103/236 (43%), Gaps = 33/236 (13%)
Query: 235 DFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSF 294
           + L S S D T   W +T     D ++  + +R    KG + +  +  +T+     +G++
Sbjct: 31  NLLLSASRDKTLISWKLT----GDDQKFGVPVRSF--KGHSHIVQDCTLTA-----DGAY 79
Query: 295 LATGSYDGYARIW-TSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASG 353
             + S+D   R+W  + G        HK  + ++  +K+ + I+S   DKT  +W    G
Sbjct: 80  ALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVW-TIKG 138
Query: 354 QCEQQFSFHSAPALDVDWQSNTSFA--SCSTDQHIHVCKLHSDKPVKS-----------F 400
           QC      H+      DW S         + D  + +    +DK VK+           F
Sbjct: 139 QCLATLLGHN------DWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADF 192
Query: 401 EGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHDLQAHNKEIYTIKWSP 456
            GH + +N +   P G L+AS   D  + +W+L     ++ L A + E++++ +SP
Sbjct: 193 IGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQD-EVFSLAFSP 247

>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 319

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 68/308 (22%), Positives = 128/308 (41%), Gaps = 28/308 (9%)
Query: 313 LKSTLGQHKGPIFALKWNK-RGNYILSAGVDKTTIIW-----DAASGQCEQQFSFHSAPA 366
           L+ TL  H G + +L  +  + N +LSA  DKT I W     D   G   + F  HS   
Sbjct: 9   LRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIV 68
Query: 367 LDVDWQSNTSFA-SCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDD 425
            D    ++ ++A S S D+ + +  + + +  + F GH ++V ++  D +  ++ S S D
Sbjct: 69  QDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRD 128
Query: 426 MTLKIWSLDKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLI---------------F 470
            T+K+W++ K  C+  L  HN  +  ++  P   +  + ++++I               F
Sbjct: 129 KTIKVWTI-KGQCLATLLGHNDWVSQVRVVPN-EKADDDSVTIISAGNDKMVKAWNLNQF 186
Query: 471 ILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDW 530
            +++    H   I  L  +  G  I SAG D   ++W+ A+ +     S        + +
Sbjct: 187 QIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQD-EVFSLAF 245
Query: 531 QSNTSFASCSTDQHIHVCKLHSDKPVKSFEGHTTGQLVHSYKGTGGIFEVCWNSRGDKVG 590
             N  + + +T   I V  L     V        G   +S         + W++ G  + 
Sbjct: 246 SPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAG---YSKAAEPHAVSLAWSADGQTLF 302
Query: 591 ASASDGSV 598
           A  +D  +
Sbjct: 303 AGYTDNVI 310

>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex: Destruction Motif Binding And Lysine Specificity On The Scfbeta-Trcp1 Ubiquitin Ligase Length = 435

Iteration: 1
 Score = 64.7 bits (156), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 67/291 (23%), Positives = 126/291 (43%), Gaps = 44/291 (15%)
Query: 237 LASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFLA 296
           + SG  D+T +IWD      K+  E + +L      G T       V  L ++     + 
Sbjct: 146 IVSGLRDNTIKIWD------KNTLECKRIL-----TGHT-----GSVLCLQYDER--VII 187
Query: 297 TGSYDGYARIW-TSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASG-- 353
           TGS D   R+W  + G + +TL  H   +  L++N     +++   D++  +WD AS   
Sbjct: 188 TGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFN--NGMMVTCSKDRSIAVWDMASPTD 245
Query: 354 -QCEQQFSFHSAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKW 412
               +    H A    VD+  +    S S D+ I V    + + V++  GH   +  +++
Sbjct: 246 ITLRRVLVGHRAAVNVVDFD-DKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQY 304
Query: 413 DPQGLLLASCSDDMTLKIWSLDKDNCVHDLQAHNKEIYTIKWSPTGPETS---------- 462
             +  L+ S S D T+++W ++   C+  L+ H + +  I++      +           
Sbjct: 305 RDR--LVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWD 362
Query: 463 -----NPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWD 508
                +P      +   TL +H G +F L++++    I+S+  D T +IWD
Sbjct: 363 LVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDE--FQIVSSSHDDTILIWD 411

>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a Cryo-em Map Of Yeast 80s Ribosome Length = 314

Iteration: 1
 Score = 64.7 bits (156), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 56/236 (23%), Positives = 103/236 (43%), Gaps = 33/236 (13%)
Query: 235 DFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSF 294
           + L S S D T   W +T     D ++  + +R    KG + +  +  +T+     +G++
Sbjct: 31  NLLLSASRDKTLISWKLT----GDDQKFGVPVRSF--KGHSHIVQDCTLTA-----DGAY 79
Query: 295 LATGSYDGYARIW-TSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASG 353
             + S+D   R+W  + G        HK  + ++  +K+ + I+S   DKT  +W    G
Sbjct: 80  ALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVW-TIKG 138
Query: 354 QCEQQFSFHSAPALDVDWQSNTSFA--SCSTDQHIHVCKLHSDKPVKS-----------F 400
           QC      H+      DW S         + D  + +    +DK VK+           F
Sbjct: 139 QCLATLLGHN------DWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADF 192
Query: 401 EGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHDLQAHNKEIYTIKWSP 456
            GH + +N +   P G L+AS   D  + +W+L     ++ L A + E++++ +SP
Sbjct: 193 IGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQD-EVFSLAFSP 247

>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a Cryo-em Map Of Yeast 80s Ribosome Length = 314

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 56/229 (24%), Positives = 104/229 (45%), Gaps = 24/229 (10%)
Query: 313 LKSTLGQHKGPIFALKWNK-RGNYILSAGVDKTTIIW-----DAASGQCEQQFSFHSAPA 366
           L+ TL  H G + +L  +  + N +LSA  DKT I W     D   G   + F  HS   
Sbjct: 9   LRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIV 68
Query: 367 LDVDWQSNTSFA-SCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDD 425
            D    ++ ++A S S D+ + +  + + +  + F GH ++V ++  D +  ++ S S D
Sbjct: 69  QDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRD 128
Query: 426 MTLKIWSLDKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLI---------------F 470
            T+K+W++ K  C+  L  HN  +  ++  P   +  + ++++I               F
Sbjct: 129 KTIKVWTI-KGQCLATLLGHNDWVSQVRVVPN-EKADDDSVTIISAGNDKMVKAWNLNQF 186
Query: 471 ILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFS 519
            +++    H   I  L  +  G  I SAG D   ++W+ A+ +     S
Sbjct: 187 QIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLS 235

>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 313

Iteration: 1
 Score = 64.7 bits (156), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 56/236 (23%), Positives = 103/236 (43%), Gaps = 33/236 (13%)
Query: 235 DFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSF 294
           + L S S D T   W +T     D ++  + +R    KG + +  +  +T+     +G++
Sbjct: 25  NLLLSASRDKTLISWKLT----GDDQKFGVPVRSF--KGHSHIVQDCTLTA-----DGAY 73
Query: 295 LATGSYDGYARIW-TSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASG 353
             + S+D   R+W  + G        HK  + ++  +K+ + I+S   DKT  +W    G
Sbjct: 74  ALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVW-TIKG 132
Query: 354 QCEQQFSFHSAPALDVDWQSNTSFA--SCSTDQHIHVCKLHSDKPVKS-----------F 400
           QC      H+      DW S         + D  + +    +DK VK+           F
Sbjct: 133 QCLATLLGHN------DWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADF 186
Query: 401 EGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHDLQAHNKEIYTIKWSP 456
            GH + +N +   P G L+AS   D  + +W+L     ++ L A + E++++ +SP
Sbjct: 187 IGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQD-EVFSLAFSP 241

>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 313

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 68/308 (22%), Positives = 128/308 (41%), Gaps = 28/308 (9%)
Query: 313 LKSTLGQHKGPIFALKWNK-RGNYILSAGVDKTTIIW-----DAASGQCEQQFSFHSAPA 366
           L+ TL  H G + +L  +  + N +LSA  DKT I W     D   G   + F  HS   
Sbjct: 3   LRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIV 62
Query: 367 LDVDWQSNTSFA-SCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDD 425
            D    ++ ++A S S D+ + +  + + +  + F GH ++V ++  D +  ++ S S D
Sbjct: 63  QDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRD 122
Query: 426 MTLKIWSLDKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLI---------------F 470
            T+K+W++ K  C+  L  HN  +  ++  P   +  + ++++I               F
Sbjct: 123 KTIKVWTI-KGQCLATLLGHNDWVSQVRVVPN-EKADDDSVTIISAGNDKMVKAWNLNQF 180
Query: 471 ILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDW 530
            +++    H   I  L  +  G  I SAG D   ++W+ A+ +     S        + +
Sbjct: 181 QIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQD-EVFSLAF 239
Query: 531 QSNTSFASCSTDQHIHVCKLHSDKPVKSFEGHTTGQLVHSYKGTGGIFEVCWNSRGDKVG 590
             N  + + +T   I V  L     V        G   +S         + W++ G  + 
Sbjct: 240 SPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAG---YSKAAEPHAVSLAWSADGQTLF 296
Query: 591 ASASDGSV 598
           A  +D  +
Sbjct: 297 AGYTDNVI 304

>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex Length = 464

Iteration: 1
 Score = 63.5 bits (153), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 77/311 (24%), Positives = 130/311 (41%), Gaps = 47/311 (15%)
Query: 283 VTSLDWNNNGSFLATGSYDGYARIWTS-DGSLKSTLGQHKGPIFALKWNKRGNYILSAGV 341
           +T L + +N  ++ TG+ D   R++ S +      L  H G ++ALK+   G  ++S   
Sbjct: 125 ITCLQFEDN--YVITGADDKXIRVYDSINKKFLLQLSGHDGGVWALKY-AHGGILVSGST 181
Query: 342 DKTTIIWDAASGQCEQQFSFHSAPA--LD-VDWQSNTSFASCSTDQHIHVCKL------- 391
           D+T  +WD   G C   F  H++    LD V++++     + S D  +HV KL       
Sbjct: 182 DRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVP 241
Query: 392 ----HSDKP------------VKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDK 435
                 D P            V    GH   V  +     G ++ S S D TL +W + +
Sbjct: 242 DHGEEHDYPLVFHTPEENPYFVGVLRGHXASVRTVS--GHGNIVVSGSYDNTLIVWDVAQ 299
Query: 436 DNCVHDLQAHNKEIYTIKWSPTGPE-TSNPNMSLIFI-------LKSTLGQHKGPIFALK 487
             C++ L  H   IY+  +        S    + I I       L  TL  H   +  L+
Sbjct: 300 XKCLYILSGHTDRIYSTIYDHERKRCISASXDTTIRIWDLENGELXYTLQGHTALVGLLR 359
Query: 488 WNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFH--SAPALDVDWQSNTSFASCSTDQHI 545
            + +  +++SA  D +   WDA      ++FS+H  +  A+   + S+    S S +Q  
Sbjct: 360 LSDK--FLVSAAADGSIRGWDA--NDYSRKFSYHHTNLSAITTFYVSDNILVSGSENQ-F 414
Query: 546 HVCKLHSDKPV 556
           ++  L S K V
Sbjct: 415 NIYNLRSGKLV 425

>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1. Length = 319

Iteration: 1
 Score = 62.8 bits (151), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 56/236 (23%), Positives = 102/236 (43%), Gaps = 33/236 (13%)
Query: 235 DFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSF 294
           + L S S D T   W +T     D ++  + +R    KG + +  +  +T+     +G++
Sbjct: 31  NLLLSASRDKTLISWKLT----GDDQKFGVPVRSF--KGHSHIVQDCTLTA-----DGAY 79
Query: 295 LATGSYDGYARIW-TSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASG 353
             + S+D   R+W  + G        HK  + ++  +K+ + I+S   DKT  +W    G
Sbjct: 80  ALSASWDKTLRLWDVATGETYQRFVGHKSDVXSVDIDKKASXIISGSRDKTIKVW-TIKG 138
Query: 354 QCEQQFSFHSAPALDVDWQSNTSFA--SCSTDQHIHVCKLHSDKPVKS-----------F 400
           QC      H+      DW S         + D  + +    +DK VK+           F
Sbjct: 139 QCLATLLGHN------DWVSQVRVVPNEKADDDSVTIISAGNDKXVKAWNLNQFQIEADF 192
Query: 401 EGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHDLQAHNKEIYTIKWSP 456
            GH + +N +   P G L+AS   D  + +W+L      + L A + E++++ +SP
Sbjct: 193 IGHNSNINTLTASPDGTLIASAGKDGEIXLWNLAAKKAXYTLSAQD-EVFSLAFSP 247

>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1. Length = 319

Iteration: 1
 Score = 59.3 bits (142), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 56/229 (24%), Positives = 102/229 (44%), Gaps = 24/229 (10%)
Query: 313 LKSTLGQHKGPIFALKWNK-RGNYILSAGVDKTTIIW-----DAASGQCEQQFSFHSAPA 366
           L+ TL  H G + +L  +  + N +LSA  DKT I W     D   G   + F  HS   
Sbjct: 9   LRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIV 68
Query: 367 LDVDWQSNTSFA-SCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDD 425
            D    ++ ++A S S D+ + +  + + +  + F GH ++V ++  D +   + S S D
Sbjct: 69  QDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVXSVDIDKKASXIISGSRD 128
Query: 426 MTLKIWSLDKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLI---------------F 470
            T+K+W++ K  C+  L  HN  +  ++  P   +  + ++++I               F
Sbjct: 129 KTIKVWTI-KGQCLATLLGHNDWVSQVRVVPN-EKADDDSVTIISAGNDKXVKAWNLNQF 186
Query: 471 ILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFS 519
            +++    H   I  L  +  G  I SAG D    +W+ A+ +     S
Sbjct: 187 QIEADFIGHNSNINTLTASPDGTLIASAGKDGEIXLWNLAAKKAXYTLS 235

>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 343

Iteration: 1
 Score = 61.6 bits (148), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 65/315 (20%), Positives = 120/315 (38%), Gaps = 63/315 (20%)
Query: 136 LTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKGTGGIFEVCWNSRGTP 195
           LT H   V  +A S +  F  S S+DK + +W  RTG    +YK                
Sbjct: 72  LTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGT---TYK---------------- 112
Query: 196 PNPPESMEVDASIEIPQSKATKLIGHESEVFICAWNPVKDFLASGSGDSTARIWDMTDST 255
                                + +GH+SEV+  A++P    + S   +   ++W++    
Sbjct: 113 ---------------------RFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGEC 151
Query: 256 K--KDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFLATGSYDGYARIWTSDGSL 313
           K     KE       C+        +NK V          + A+  +DG  ++W ++  +
Sbjct: 152 KFSSAEKENHSDWVSCVRYSPIMKSANK-VQPF-----APYFASVGWDGRLKVWNTNFQI 205
Query: 314 KSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALD-VDWQ 372
           + T   H+  +  L  +  G YI + G DK  +IWD  +    Q+  F +   ++ + + 
Sbjct: 206 RYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQR-EFDAGSTINQIAFN 264
Query: 373 SNTSFASCSTDQHIHVCKL--HSDKPVKSFE-----------GHTNEVNAIKWDPQGLLL 419
               + +  TDQ + +  L   S  PV + E           G   +  ++ W+  G  L
Sbjct: 265 PKLQWVAVGTDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKL 324
Query: 420 ASCSDDMTLKIWSLD 434
            +   D  ++ +S +
Sbjct: 325 FAGFTDGVIRTFSFE 339

>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 343

Iteration: 1
 Score = 58.5 bits (140), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 62/304 (20%), Positives = 122/304 (40%), Gaps = 31/304 (10%)
Query: 325 FALKWNKRGNYILSAGVDKTTIIW-------DAASGQCEQQFSFHSAPALDVDWQSNTSF 377
           F+ K N+    ++S   DKT +IW       +   G   +  + H+    D+       F
Sbjct: 31  FSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCF 90
Query: 378 A-SCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSL--D 434
           A S S D+ + +  L +    K F GH +EV ++ + P    + S   +  +K+W++  +
Sbjct: 91  AISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGE 150
Query: 435 KDNCVHDLQAHNKEIYTIKWSPTGPETSN-----PNMSLI------------FILKSTLG 477
                 + + H+  +  +++SP     +      P  + +            F ++ T  
Sbjct: 151 CKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNFQIRYTFK 210
Query: 478 QHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALD-VDWQSNTSF 536
            H+  +  L  +  G YI + G DK  +IWD  +    Q+  F +   ++ + +     +
Sbjct: 211 AHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQR-EFDAGSTINQIAFNPKLQW 269
Query: 537 ASCSTDQHIHVCKL--HSDKPVKSFEGHTTGQLVHSYKGTGGIFEVCWNSRGDKVGASAS 594
            +  TDQ + +  L   S  PV + E     +             + WN+ G K+ A  +
Sbjct: 270 VAVGTDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLFAGFT 329
Query: 595 DGSV 598
           DG +
Sbjct: 330 DGVI 333

>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana Length = 694

Iteration: 1
 Score = 61.6 bits (148), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 64/270 (23%), Positives = 119/270 (44%), Gaps = 25/270 (9%)
Query: 313 LKSTLGQHKGPIFALKWN-KRGNYILSAGVDKTTIIW-----DAASGQCEQQFSFHSAPA 366
           LK T+  H   + A+       + I+SA  DK+ I+W     D A G  +++ + HS   
Sbjct: 374 LKGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFV 433
Query: 367 LDVDWQSNTSFA-SCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDD 425
            DV   S+  FA S S D  + +  L +    + F GHT +V ++ +      + S S D
Sbjct: 434 EDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRD 493
Query: 426 MTLKIWSLDKDNCVHDL----QAHNKEIYTIKWSPTGPETSNPNMS---LIFI------- 471
            T+K+W+   + C + +    + H   +  +++SP   + +  + S    + +       
Sbjct: 494 RTIKLWNTLGE-CKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCK 552
Query: 472 LKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQ 531
           L+STL  H G +  +  +  G+   S G D   ++WD A G+  + +S  +   +     
Sbjct: 553 LRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGK--KLYSLEANSVIHALCF 610
Query: 532 SNTSFASCSTDQH-IHVCKLHSDKPVKSFE 560
           S   +  C+  +H I +  L S   V+  +
Sbjct: 611 SPNRYWLCAATEHGIKIWDLESKSIVEDLK 640

>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 318

Iteration: 1
 Score = 58.9 bits (141), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 47/184 (25%), Positives = 79/184 (42%), Gaps = 16/184 (8%)
Query: 283 VTSLDWNNNGSFLATGSYDGYARIWT-SDGSLKSTLGQHKGPIFALKWNKRGNYILSAGV 341
           V+ +  +NNG+F  + S+D   R+W   +G  +     H   + ++ ++     I+S G 
Sbjct: 70  VSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDNRQIVSGGR 129
Query: 342 DKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTSFA---------SCSTDQHIHVCKLH 392
           D    +W+   G+C    S  +      DW S   F+         S   D  + V  L 
Sbjct: 130 DNALRVWNV-KGECMHTLSRGA----HTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWDLA 184
Query: 393 SDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHDLQAHNKEIYTI 452
           + + V   +GHTN V ++   P G L AS   D   ++W L K   + ++ A    I  I
Sbjct: 185 TGRLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLWDLTKGEALSEMAA-GAPINQI 243
Query: 453 KWSP 456
            +SP
Sbjct: 244 CFSP 247

>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 318

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 33/151 (21%), Positives = 63/151 (41%), Gaps = 13/151 (8%)
Query: 383 DQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHDL 442
           D+H   C      P +  EGH+  V+ +     G    S S D +L++W+L    C +  
Sbjct: 48  DRHSSECSY--GLPDRRLEGHSAFVSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKF 105
Query: 443 QAHNKEIYTIKWSPTGPET---SNPNMSLIFILKS------TLGQHKGPIFALKWNKR-- 491
             H K++ ++ +SP   +       N   ++ +K       + G H   +  ++++    
Sbjct: 106 LGHTKDVLSVAFSPDNRQIVSGGRDNALRVWNVKGECMHTLSRGAHTDWVSCVRFSPSLD 165
Query: 492 GNYILSAGVDKTTIIWDAASGQCEQQFSFHS 522
              I+S G D    +WD A+G+       H+
Sbjct: 166 APVIVSGGWDNLVKVWDLATGRLVTDLKGHT 196

>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs Protein Complex Length = 351

Iteration: 1
 Score = 58.9 bits (141), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 50/194 (25%), Positives = 82/194 (42%), Gaps = 26/194 (13%)
Query: 121 TLPLWDVERGECLNTLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKG 180
           T  LWD+E G+   T T HT  V S++ +PD +   SG+ D    +W  R G    ++ G
Sbjct: 176 TCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTG 235
Query: 181 -TGGIFEVCWNSRGTPPNPPESMEVDASIEIPQSKATK-LIGHESEVFICAWNPVK---- 234
               I  +C+   G   N   +   DA+  +   +A + L+ +  +  IC    V     
Sbjct: 236 HESDINAICFFPNG---NAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKS 292
Query: 235 -DFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGS 293
              L +G  D    +W   D+ K D             + G     +  V+ L   ++G 
Sbjct: 293 GRLLLAGYDDFNCNVW---DALKAD-------------RAGVLAGHDNRVSCLGVTDDGM 336
Query: 294 FLATGSYDGYARIW 307
            +ATGS+D + +IW
Sbjct: 337 AVATGSWDSFLKIW 350

>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs Protein Complex Length = 351

Iteration: 1
 Score = 49.7 bits (117), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 69/331 (20%), Positives = 121/331 (36%), Gaps = 63/331 (19%)
Query: 135 TLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKGTGGIFEVCWNSRGT 194
           TL  H   +Y++ +  D + L S S D  + IW + T   VH+                 
Sbjct: 61  TLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHA----------------- 103
Query: 195 PPNPPESMEVDASIEIPQSKATKLIGHESEVFICAWNPVKDFLASGSGDSTARIWDM--T 252
                          IP           S V  CA+ P  +++A G  D+   I+++   
Sbjct: 104 ---------------IPL--------RSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTR 140
Query: 253 DSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFLATGSYDGYARIWTSDGS 312
           +   +  +EL          G T   S      LD N     + T S D    +W  +  
Sbjct: 141 EGNVRVSREL---------AGHTGYLSC--CRFLDDNQ----IVTSSGDTTCALWDIETG 185
Query: 313 LKSTLGQ-HKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDW 371
            ++T    H G + +L         +S   D +  +WD   G C Q F+ H +    + +
Sbjct: 186 QQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICF 245
Query: 372 QSN-TSFASCSTDQHIHVCKLHSDKPVKSFEGHTN---EVNAIKWDPQGLLLASCSDDMT 427
             N  +FA+ S D    +  L +D+ + ++  H N    + ++ +   G LL +  DD  
Sbjct: 246 FPNGNAFATGSDDATCRLFDLRADQELMTYS-HDNIICGITSVSFSKSGRLLLAGYDDFN 304
Query: 428 LKIWSLDKDNCVHDLQAHNKEIYTIKWSPTG 458
             +W   K +    L  H+  +  +  +  G
Sbjct: 305 CNVWDALKADRAGVLAGHDNRVSCLGVTDDG 335

>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs Protein Complex Length = 351

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 45/254 (17%), Positives = 95/254 (37%), Gaps = 45/254 (17%)
Query: 314 KSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQS 373
           + TL  H   I+A+ W      ++SA  D   IIWD+ +          S+  +   +  
Sbjct: 59  RRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAP 118
Query: 374 NTSFASCSTDQHIHVCKLHSDKP-------VKSFEGHTNEVNAIKWDPQGLLLASCSDDM 426
           + ++ +C    +I  C +++ K         +   GHT  ++  ++     ++ S S D 
Sbjct: 119 SGNYVACGGLDNI--CSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTS-SGDT 175
Query: 427 TLKIWSLDKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFAL 486
           T  +W ++          H  ++ ++  +P          + +F+               
Sbjct: 176 TCALWDIETGQQTTTFTGHTGDVMSLSLAPD---------TRLFV--------------- 211
Query: 487 KWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSN-TSFASCSTDQHI 545
                     S   D +  +WD   G C Q F+ H +    + +  N  +FA+ S D   
Sbjct: 212 ----------SGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATC 261
Query: 546 HVCKLHSDKPVKSF 559
            +  L +D+ + ++
Sbjct: 262 RLFDLRADQELMTY 275

>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs Protein Complex Length = 351

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 42/181 (23%), Positives = 75/181 (41%), Gaps = 14/181 (7%)
Query: 395 KPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHDLQAHNKEIYTIKW 454
           +  ++  GH  ++ A+ W     LL S S D  L IW     N VH +   +  + T  +
Sbjct: 57  RTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAY 116
Query: 455 SPTGPETSN---PNMSLIFILKST---------LGQHKGPIFALKWNKRGNYILSAGVDK 502
           +P+G   +     N+  I+ LK+          L  H G +   ++      + S+G D 
Sbjct: 117 APSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSG-DT 175
Query: 503 TTIIWDAASGQCEQQFSFHSAPALDVDWQSNTS-FASCSTDQHIHVCKLHSDKPVKSFEG 561
           T  +WD  +GQ    F+ H+   + +    +T  F S + D    +  +      ++F G
Sbjct: 176 TCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTG 235
Query: 562 H 562
           H
Sbjct: 236 H 236

>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And The Gt-Beta-Gamma Subunits Length = 340

Iteration: 1
 Score = 58.5 bits (140), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 50/194 (25%), Positives = 82/194 (42%), Gaps = 26/194 (13%)
Query: 121 TLPLWDVERGECLNTLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKG 180
           T  LWD+E G+   T T HT  V S++ +PD +   SG+ D    +W  R G    ++ G
Sbjct: 165 TCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTG 224
Query: 181 -TGGIFEVCWNSRGTPPNPPESMEVDASIEIPQSKATK-LIGHESEVFICAWNPVK---- 234
               I  +C+   G   N   +   DA+  +   +A + L+ +  +  IC    V     
Sbjct: 225 HESDINAICFFPNG---NAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKS 281
Query: 235 -DFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGS 293
              L +G  D    +W   D+ K D             + G     +  V+ L   ++G 
Sbjct: 282 GRLLLAGYDDFNCNVW---DALKAD-------------RAGVLAGHDNRVSCLGVTDDGM 325
Query: 294 FLATGSYDGYARIW 307
            +ATGS+D + +IW
Sbjct: 326 AVATGSWDSFLKIW 339

>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And The Gt-Beta-Gamma Subunits Length = 340

Iteration: 1
 Score = 48.9 bits (115), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 70/331 (21%), Positives = 120/331 (36%), Gaps = 63/331 (19%)
Query: 135 TLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKGTGGIFEVCWNSRGT 194
           TL  H   +Y++ +  D + L S S D  + IW + T   VH+                 
Sbjct: 50  TLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHA----------------- 92
Query: 195 PPNPPESMEVDASIEIPQSKATKLIGHESEVFICAWNPVKDFLASGSGDSTARIWDM--T 252
                          IP           S V  CA+ P  +++A G  D+   I+++   
Sbjct: 93  ---------------IPL--------RSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTR 129
Query: 253 DSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFLATGSYDGYARIW-TSDG 311
           +   +  +EL          G T   S      LD N     + T S D    +W    G
Sbjct: 130 EGNVRVSREL---------AGHTGYLSC--CRFLDDNQ----IVTSSGDTTCALWDIETG 174
Query: 312 SLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDW 371
              +T   H G + +L         +S   D +  +WD   G C Q F+ H +    + +
Sbjct: 175 QQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICF 234
Query: 372 QSN-TSFASCSTDQHIHVCKLHSDKPVKSFEGHTN---EVNAIKWDPQGLLLASCSDDMT 427
             N  +FA+ S D    +  L +D+ + ++  H N    + ++ +   G LL +  DD  
Sbjct: 235 FPNGNAFATGSDDATCRLFDLRADQELMTYS-HDNIICGITSVSFSKSGRLLLAGYDDFN 293
Query: 428 LKIWSLDKDNCVHDLQAHNKEIYTIKWSPTG 458
             +W   K +    L  H+  +  +  +  G
Sbjct: 294 CNVWDALKADRAGVLAGHDNRVSCLGVTDDG 324

>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And The Gt-Beta-Gamma Subunits Length = 340

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 46/254 (18%), Positives = 95/254 (37%), Gaps = 45/254 (17%)
Query: 314 KSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQS 373
           + TL  H   I+A+ W      +LSA  D   IIWD+ +          S+  +   +  
Sbjct: 48  RRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAP 107
Query: 374 NTSFASCSTDQHIHVCKLHSDKP-------VKSFEGHTNEVNAIKWDPQGLLLASCSDDM 426
           + ++ +C    +I  C +++ K         +   GHT  ++  ++     ++ S S D 
Sbjct: 108 SGNYVACGGLDNI--CSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTS-SGDT 164
Query: 427 TLKIWSLDKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFAL 486
           T  +W ++          H  ++ ++  +P          + +F+               
Sbjct: 165 TCALWDIETGQQTTTFTGHTGDVMSLSLAPD---------TRLFV--------------- 200
Query: 487 KWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSN-TSFASCSTDQHI 545
                     S   D +  +WD   G C Q F+ H +    + +  N  +FA+ S D   
Sbjct: 201 ----------SGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATC 250
Query: 546 HVCKLHSDKPVKSF 559
            +  L +D+ + ++
Sbjct: 251 RLFDLRADQELMTY 264

>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And The Gt-Beta-Gamma Subunits Length = 340

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 42/181 (23%), Positives = 75/181 (41%), Gaps = 14/181 (7%)
Query: 395 KPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHDLQAHNKEIYTIKW 454
           +  ++  GH  ++ A+ W     LL S S D  L IW     N VH +   +  + T  +
Sbjct: 46  RTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAY 105
Query: 455 SPTGPETSN---PNMSLIFILKST---------LGQHKGPIFALKWNKRGNYILSAGVDK 502
           +P+G   +     N+  I+ LK+          L  H G +   ++      + S+G D 
Sbjct: 106 APSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSG-DT 164
Query: 503 TTIIWDAASGQCEQQFSFHSAPALDVDWQSNTS-FASCSTDQHIHVCKLHSDKPVKSFEG 561
           T  +WD  +GQ    F+ H+   + +    +T  F S + D    +  +      ++F G
Sbjct: 165 TCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTG 224
Query: 562 H 562
           H
Sbjct: 225 H 225

>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma Length = 340

Iteration: 1
 Score = 58.5 bits (140), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 50/194 (25%), Positives = 82/194 (42%), Gaps = 26/194 (13%)
Query: 121 TLPLWDVERGECLNTLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKG 180
           T  LWD+E G+   T T HT  V S++ +PD +   SG+ D    +W  R G    ++ G
Sbjct: 165 TCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTG 224
Query: 181 -TGGIFEVCWNSRGTPPNPPESMEVDASIEIPQSKATK-LIGHESEVFICAWNPVK---- 234
               I  +C+   G   N   +   DA+  +   +A + L+ +  +  IC    V     
Sbjct: 225 HESDINAICFFPNG---NAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKS 281
Query: 235 -DFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGS 293
              L +G  D    +W   D+ K D             + G     +  V+ L   ++G 
Sbjct: 282 GRLLLAGYDDFNCNVW---DALKAD-------------RAGVLAGHDNRVSCLGVTDDGM 325
Query: 294 FLATGSYDGYARIW 307
            +ATGS+D + +IW
Sbjct: 326 AVATGSWDSFLKIW 339

>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma Length = 340

Iteration: 1
 Score = 48.9 bits (115), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 70/331 (21%), Positives = 120/331 (36%), Gaps = 63/331 (19%)
Query: 135 TLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKGTGGIFEVCWNSRGT 194
           TL  H   +Y++ +  D + L S S D  + IW + T   VH+                 
Sbjct: 50  TLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHA----------------- 92
Query: 195 PPNPPESMEVDASIEIPQSKATKLIGHESEVFICAWNPVKDFLASGSGDSTARIWDM--T 252
                          IP           S V  CA+ P  +++A G  D+   I+++   
Sbjct: 93  ---------------IPL--------RSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTR 129
Query: 253 DSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFLATGSYDGYARIW-TSDG 311
           +   +  +EL          G T   S      LD N     + T S D    +W    G
Sbjct: 130 EGNVRVSREL---------AGHTGYLSC--CRFLDDNQ----IVTSSGDTTCALWDIETG 174
Query: 312 SLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDW 371
              +T   H G + +L         +S   D +  +WD   G C Q F+ H +    + +
Sbjct: 175 QQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICF 234
Query: 372 QSN-TSFASCSTDQHIHVCKLHSDKPVKSFEGHTN---EVNAIKWDPQGLLLASCSDDMT 427
             N  +FA+ S D    +  L +D+ + ++  H N    + ++ +   G LL +  DD  
Sbjct: 235 FPNGNAFATGSDDATCRLFDLRADQELMTYS-HDNIICGITSVSFSKSGRLLLAGYDDFN 293
Query: 428 LKIWSLDKDNCVHDLQAHNKEIYTIKWSPTG 458
             +W   K +    L  H+  +  +  +  G
Sbjct: 294 CNVWDALKADRAGVLAGHDNRVSCLGVTDDG 324

>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma Length = 340

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 46/254 (18%), Positives = 95/254 (37%), Gaps = 45/254 (17%)
Query: 314 KSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQS 373
           + TL  H   I+A+ W      +LSA  D   IIWD+ +          S+  +   +  
Sbjct: 48  RRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAP 107
Query: 374 NTSFASCSTDQHIHVCKLHSDKP-------VKSFEGHTNEVNAIKWDPQGLLLASCSDDM 426
           + ++ +C    +I  C +++ K         +   GHT  ++  ++     ++ S S D 
Sbjct: 108 SGNYVACGGLDNI--CSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTS-SGDT 164
Query: 427 TLKIWSLDKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFAL 486
           T  +W ++          H  ++ ++  +P          + +F+               
Sbjct: 165 TCALWDIETGQQTTTFTGHTGDVMSLSLAPD---------TRLFV--------------- 200
Query: 487 KWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSN-TSFASCSTDQHI 545
                     S   D +  +WD   G C Q F+ H +    + +  N  +FA+ S D   
Sbjct: 201 ----------SGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATC 250
Query: 546 HVCKLHSDKPVKSF 559
            +  L +D+ + ++
Sbjct: 251 RLFDLRADQELMTY 264

>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma Length = 340

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 42/181 (23%), Positives = 75/181 (41%), Gaps = 14/181 (7%)
Query: 395 KPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHDLQAHNKEIYTIKW 454
           +  ++  GH  ++ A+ W     LL S S D  L IW     N VH +   +  + T  +
Sbjct: 46  RTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAY 105
Query: 455 SPTGPETSN---PNMSLIFILKST---------LGQHKGPIFALKWNKRGNYILSAGVDK 502
           +P+G   +     N+  I+ LK+          L  H G +   ++      + S+G D 
Sbjct: 106 APSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSG-DT 164
Query: 503 TTIIWDAASGQCEQQFSFHSAPALDVDWQSNTS-FASCSTDQHIHVCKLHSDKPVKSFEG 561
           T  +WD  +GQ    F+ H+   + +    +T  F S + D    +  +      ++F G
Sbjct: 165 TCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTG 224
Query: 562 H 562
           H
Sbjct: 225 H 225

>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2 In Complex With Galpha-q And Gbetagamma Subunits Length = 340

Iteration: 1
 Score = 58.5 bits (140), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 50/194 (25%), Positives = 82/194 (42%), Gaps = 26/194 (13%)
Query: 121 TLPLWDVERGECLNTLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKG 180
           T  LWD+E G+   T T HT  V S++ +PD +   SG+ D    +W  R G    ++ G
Sbjct: 165 TCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTG 224
Query: 181 -TGGIFEVCWNSRGTPPNPPESMEVDASIEIPQSKATK-LIGHESEVFICAWNPVK---- 234
               I  +C+   G   N   +   DA+  +   +A + L+ +  +  IC    V     
Sbjct: 225 HESDINAICFFPNG---NAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKS 281
Query: 235 -DFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGS 293
              L +G  D    +W   D+ K D             + G     +  V+ L   ++G 
Sbjct: 282 GRLLLAGYDDFNCNVW---DALKAD-------------RAGVLAGHDNRVSCLGVTDDGM 325
Query: 294 FLATGSYDGYARIW 307
            +ATGS+D + +IW
Sbjct: 326 AVATGSWDSFLKIW 339

>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2 In Complex With Galpha-q And Gbetagamma Subunits Length = 340

Iteration: 1
 Score = 49.3 bits (116), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 70/331 (21%), Positives = 120/331 (36%), Gaps = 63/331 (19%)
Query: 135 TLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKGTGGIFEVCWNSRGT 194
           TL  H   +Y++ +  D + L S S D  + IW + T   VH+                 
Sbjct: 50  TLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHA----------------- 92
Query: 195 PPNPPESMEVDASIEIPQSKATKLIGHESEVFICAWNPVKDFLASGSGDSTARIWDM--T 252
                          IP           S V  CA+ P  +++A G  D+   I+++   
Sbjct: 93  ---------------IPL--------RSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTR 129
Query: 253 DSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFLATGSYDGYARIW-TSDG 311
           +   +  +EL          G T   S      LD N     + T S D    +W    G
Sbjct: 130 EGNVRVSREL---------AGHTGYLSC--CRFLDDNQ----IVTSSGDTTCALWDIETG 174
Query: 312 SLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDW 371
              +T   H G + +L         +S   D +  +WD   G C Q F+ H +    + +
Sbjct: 175 QQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICF 234
Query: 372 QSN-TSFASCSTDQHIHVCKLHSDKPVKSFEGHTN---EVNAIKWDPQGLLLASCSDDMT 427
             N  +FA+ S D    +  L +D+ + ++  H N    + ++ +   G LL +  DD  
Sbjct: 235 FPNGNAFATGSDDATCRLFDLRADQELMTYS-HDNIICGITSVSFSKSGRLLLAGYDDFN 293
Query: 428 LKIWSLDKDNCVHDLQAHNKEIYTIKWSPTG 458
             +W   K +    L  H+  +  +  +  G
Sbjct: 294 CNVWDALKADRAGVLAGHDNRVSCLGVTDDG 324

>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2 In Complex With Galpha-q And Gbetagamma Subunits Length = 340

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 45/254 (17%), Positives = 95/254 (37%), Gaps = 45/254 (17%)
Query: 314 KSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQS 373
           + TL  H   I+A+ W      ++SA  D   IIWD+ +          S+  +   +  
Sbjct: 48  RRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAP 107
Query: 374 NTSFASCSTDQHIHVCKLHSDKP-------VKSFEGHTNEVNAIKWDPQGLLLASCSDDM 426
           + ++ +C    +I  C +++ K         +   GHT  ++  ++     ++ S S D 
Sbjct: 108 SGNYVACGGLDNI--CSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTS-SGDT 164
Query: 427 TLKIWSLDKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFAL 486
           T  +W ++          H  ++ ++  +P          + +F+               
Sbjct: 165 TCALWDIETGQQTTTFTGHTGDVMSLSLAPD---------TRLFV--------------- 200
Query: 487 KWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSN-TSFASCSTDQHI 545
                     S   D +  +WD   G C Q F+ H +    + +  N  +FA+ S D   
Sbjct: 201 ----------SGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATC 250
Query: 546 HVCKLHSDKPVKSF 559
            +  L +D+ + ++
Sbjct: 251 RLFDLRADQELMTY 264

>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2 In Complex With Galpha-q And Gbetagamma Subunits Length = 340

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 42/181 (23%), Positives = 75/181 (41%), Gaps = 14/181 (7%)
Query: 395 KPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHDLQAHNKEIYTIKW 454
           +  ++  GH  ++ A+ W     LL S S D  L IW     N VH +   +  + T  +
Sbjct: 46  RTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAY 105
Query: 455 SPTGPETSN---PNMSLIFILKST---------LGQHKGPIFALKWNKRGNYILSAGVDK 502
           +P+G   +     N+  I+ LK+          L  H G +   ++      + S+G D 
Sbjct: 106 APSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSG-DT 164
Query: 503 TTIIWDAASGQCEQQFSFHSAPALDVDWQSNTS-FASCSTDQHIHVCKLHSDKPVKSFEG 561
           T  +WD  +GQ    F+ H+   + +    +T  F S + D    +  +      ++F G
Sbjct: 165 TCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTG 224
Query: 562 H 562
           H
Sbjct: 225 H 225

>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1 Gamma_2 With Gdp Bound Length = 340

Iteration: 1
 Score = 58.5 bits (140), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 50/194 (25%), Positives = 82/194 (42%), Gaps = 26/194 (13%)
Query: 121 TLPLWDVERGECLNTLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKG 180
           T  LWD+E G+   T T HT  V S++ +PD +   SG+ D    +W  R G    ++ G
Sbjct: 165 TCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTG 224
Query: 181 -TGGIFEVCWNSRGTPPNPPESMEVDASIEIPQSKATK-LIGHESEVFICAWNPVK---- 234
               I  +C+   G   N   +   DA+  +   +A + L+ +  +  IC    V     
Sbjct: 225 HESDINAICFFPNG---NAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKS 281
Query: 235 -DFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGS 293
              L +G  D    +W   D+ K D             + G     +  V+ L   ++G 
Sbjct: 282 GRLLLAGYDDFNCNVW---DALKAD-------------RAGVLAGHDNRVSCLGVTDDGM 325
Query: 294 FLATGSYDGYARIW 307
            +ATGS+D + +IW
Sbjct: 326 AVATGSWDSFLKIW 339

>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1 Gamma_2 With Gdp Bound Length = 340

Iteration: 1
 Score = 49.3 bits (116), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 70/331 (21%), Positives = 120/331 (36%), Gaps = 63/331 (19%)
Query: 135 TLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKGTGGIFEVCWNSRGT 194
           TL  H   +Y++ +  D + L S S D  + IW + T   VH+                 
Sbjct: 50  TLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHA----------------- 92
Query: 195 PPNPPESMEVDASIEIPQSKATKLIGHESEVFICAWNPVKDFLASGSGDSTARIWDM--T 252
                          IP           S V  CA+ P  +++A G  D+   I+++   
Sbjct: 93  ---------------IPL--------RSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTR 129
Query: 253 DSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFLATGSYDGYARIW-TSDG 311
           +   +  +EL          G T   S      LD N     + T S D    +W    G
Sbjct: 130 EGNVRVSREL---------AGHTGYLSC--CRFLDDNQ----IVTSSGDTTCALWDIETG 174
Query: 312 SLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDW 371
              +T   H G + +L         +S   D +  +WD   G C Q F+ H +    + +
Sbjct: 175 QQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICF 234
Query: 372 QSN-TSFASCSTDQHIHVCKLHSDKPVKSFEGHTN---EVNAIKWDPQGLLLASCSDDMT 427
             N  +FA+ S D    +  L +D+ + ++  H N    + ++ +   G LL +  DD  
Sbjct: 235 FPNGNAFATGSDDATCRLFDLRADQELMTYS-HDNIICGITSVSFSKSGRLLLAGYDDFN 293
Query: 428 LKIWSLDKDNCVHDLQAHNKEIYTIKWSPTG 458
             +W   K +    L  H+  +  +  +  G
Sbjct: 294 CNVWDALKADRAGVLAGHDNRVSCLGVTDDG 324

>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1 Gamma_2 With Gdp Bound Length = 340

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 45/254 (17%), Positives = 95/254 (37%), Gaps = 45/254 (17%)
Query: 314 KSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQS 373
           + TL  H   I+A+ W      ++SA  D   IIWD+ +          S+  +   +  
Sbjct: 48  RRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAP 107
Query: 374 NTSFASCSTDQHIHVCKLHSDKP-------VKSFEGHTNEVNAIKWDPQGLLLASCSDDM 426
           + ++ +C    +I  C +++ K         +   GHT  ++  ++     ++ S S D 
Sbjct: 108 SGNYVACGGLDNI--CSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTS-SGDT 164
Query: 427 TLKIWSLDKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFAL 486
           T  +W ++          H  ++ ++  +P          + +F+               
Sbjct: 165 TCALWDIETGQQTTTFTGHTGDVMSLSLAPD---------TRLFV--------------- 200
Query: 487 KWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSN-TSFASCSTDQHI 545
                     S   D +  +WD   G C Q F+ H +    + +  N  +FA+ S D   
Sbjct: 201 ----------SGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATC 250
Query: 546 HVCKLHSDKPVKSF 559
            +  L +D+ + ++
Sbjct: 251 RLFDLRADQELMTY 264

>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1 Gamma_2 With Gdp Bound Length = 340

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 42/181 (23%), Positives = 75/181 (41%), Gaps = 14/181 (7%)
Query: 395 KPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHDLQAHNKEIYTIKW 454
           +  ++  GH  ++ A+ W     LL S S D  L IW     N VH +   +  + T  +
Sbjct: 46  RTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAY 105
Query: 455 SPTGPETSN---PNMSLIFILKST---------LGQHKGPIFALKWNKRGNYILSAGVDK 502
           +P+G   +     N+  I+ LK+          L  H G +   ++      + S+G D 
Sbjct: 106 APSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSG-DT 164
Query: 503 TTIIWDAASGQCEQQFSFHSAPALDVDWQSNTS-FASCSTDQHIHVCKLHSDKPVKSFEG 561
           T  +WD  +GQ    F+ H+   + +    +T  F S + D    +  +      ++F G
Sbjct: 165 TCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTG 224
Query: 562 H 562
           H
Sbjct: 225 H 225

>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1 Length = 313

Iteration: 1
 Score = 58.5 bits (140), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 43/140 (30%), Positives = 72/140 (51%), Gaps = 6/140 (4%)
Query: 295 LATGSYDGYARIWTSDGSLKSTLGQHKGPIFALKW-NKRGNYILSAGVDKTTIIWDAASG 353
           + +GS+D  A++W  +GSL   L  H   ++  K  +   N  L+A  DKT  +W   + 
Sbjct: 117 VISGSWDKTAKVW-KEGSLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLW--QND 173
Query: 354 QCEQQFS-FHSAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKW 412
           +  + FS  H+     +    +  F SCS D  I +   H+   ++++EGH + V  IK 
Sbjct: 174 KVIKTFSGIHNDVVRHLAVVDDGHFISCSNDGLIKLVDXHTGDVLRTYEGHESFVYCIKL 233
Query: 413 DPQGLLLASCSDDMTLKIWS 432
            P G ++ SC +D T++IWS
Sbjct: 234 LPNGDIV-SCGEDRTVRIWS 252

>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1 Length = 313

Iteration: 1
 Score = 45.8 bits (107), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 54/235 (22%), Positives = 89/235 (37%), Gaps = 45/235 (19%)
Query: 316 TLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALD--VDWQS 373
           TL  H+G + +L +  +   ++S   DKT  +W    G        H+A   D  V   S
Sbjct: 99  TLIGHQGNVCSLSF--QDGVVISGSWDKTAKVW--KEGSLVYNLQAHNASVWDAKVVSFS 154
Query: 374 NTSFASCSTDQHIHVCKLHSDKPVKSFEG-HTNEVNAIKWDPQGLLLASCSDDMTLKIWS 432
              F + S D+ I + +  +DK +K+F G H + V  +     G  + SCS+D  +K+  
Sbjct: 155 ENKFLTASADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGHFI-SCSNDGLIKLVD 211
Query: 433 LDKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRG 492
               + +   + H   +Y IK  P G                                  
Sbjct: 212 XHTGDVLRTYEGHESFVYCIKLLPNGD--------------------------------- 238
Query: 493 NYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTSFASCSTDQHIHV 547
             I+S G D+T  IW   +G  +Q  +  +     VD  SN      S+D  + +
Sbjct: 239 --IVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCXSNGDIIVGSSDNLVRI 291

>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The Structure Of A C. Elegans Homologue Of Yeast Actin Interacting Protein 1 (Aip1). Length = 611

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 70/370 (18%), Positives = 125/370 (33%), Gaps = 76/370 (20%)
Query: 221 HESEVFICAWNPVKDFLASGSGDSTARIWDMTDST-------------------KKDPKE 261
           H  +  +   +P   + ASG      RIWD T +T                     + K 
Sbjct: 58  HSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKR 117
Query: 262 L-----------QIVLRHCISKGGTEVPSNKDVTSLDWNNNGSF-LATGSYDGYARIWTS 309
           +            + L    +  G      + + S+D+  +  F + +GS D    I+  
Sbjct: 118 IAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEG 177
Query: 310 DG-SLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALD 368
                KST G+H   + ++++N  G+   S G D T ++++   G     F         
Sbjct: 178 PPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVF--------- 228
Query: 369 VDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTL 428
                                    D  +K+   H+  V  + W P G  +AS S D T+
Sbjct: 229 ------------------------EDDSLKNV-AHSGSVFGLTWSPDGTKIASASADKTI 263
Query: 429 KIWSLDKDNCVHDLQAHNK---EIYTIKWSPTGPETSNPNMSLIFI------LKSTLGQH 479
           KIW++        +    +   +   I W+     + + N  + F+      +      H
Sbjct: 264 KIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGH 323
Query: 480 KGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQF-SFHSAPALDVDWQSNTSFAS 538
              I AL  +  G  + SA  +     WD ++G   + F   H+     +   S     +
Sbjct: 324 NKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFT 383
Query: 539 CSTDQHIHVC 548
            S D H+ V 
Sbjct: 384 VSWDDHLKVV 393

>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution Of 2.45 Angstrom Length = 340

Iteration: 1
 Score = 57.8 bits (138), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 78/318 (24%), Positives = 128/318 (40%), Gaps = 36/318 (11%)
Query: 218 LIGHESEVFICAWNP-VKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTE 276
           L GH   V   A  P   D + S S D T  +W +T    +D     I  R    +G + 
Sbjct: 34  LKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLT----RDETNYGIPQRAL--RGHSH 87
Query: 277 VPSNKDVTSLDWNNNGSFLATGSYDGYARIW-TSDGSLKSTLGQHKGPIFALKWNKRGNY 335
             S+  ++S     +G F  +GS+DG  R+W  + G+       H   + ++ ++     
Sbjct: 88  FVSDVVISS-----DGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQ 142
Query: 336 ILSAGVDKTTIIWDAASGQCEQ--QFSFHSAPALDVDWQSNTS---FASCSTDQHIHVCK 390
           I+S   DKT  +W+   G C+   Q   HS     V +  N+S     SC  D+ + V  
Sbjct: 143 IVSGSRDKTIKLWNTL-GVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWN 201
Query: 391 LHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHDLQAHNKEIY 450
           L + K   +  GHT  +N +   P G L AS   D    +W L++   ++ L   +  I 
Sbjct: 202 LANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDI-IN 260
Query: 451 TIKWSP--------TGPETSNPNMSLIFILK-------STLGQHKGP-IFALKWNKRGNY 494
            + +SP        TGP     ++    I+        ST  + + P   +L W+  G  
Sbjct: 261 ALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQT 320
Query: 495 ILSAGVDKTTIIWDAASG 512
           + +   D    +W    G
Sbjct: 321 LFAGYTDNLVRVWQVTIG 338

>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution Of 2.45 Angstrom Length = 340

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 58/233 (24%), Positives = 104/233 (44%), Gaps = 26/233 (11%)
Query: 303 YARIWTSDGSLKSTLGQHKGPIFALKWNKR-GNYILSAGVDKTTIIW-----DAASGQCE 356
           +  + T   +L+ TL  H G +  +    +  + ILSA  DKT I+W     +   G  +
Sbjct: 20  FQSMMTEQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQ 79
Query: 357 QQFSFHSAPALDVDWQSNTSFA-SCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQ 415
           +    HS    DV   S+  FA S S D  + +  L +    + F GHT +V ++ +   
Sbjct: 80  RALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSD 139
Query: 416 GLLLASCSDDMTLKIWSLDKDNCVHDLQ--AHNKEIYTIKWSPTGPETSNPNM------S 467
              + S S D T+K+W+     C + +Q  +H++ +  +++SP    +SNP +       
Sbjct: 140 NRQIVSGSRDKTIKLWN-TLGVCKYTVQDESHSEWVSCVRFSP---NSSNPIIVSCGWDK 195
Query: 468 LIFI-------LKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQ 513
           L+ +       LK+    H G +  +  +  G+   S G D   ++WD   G+
Sbjct: 196 LVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGK 248

>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 317

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 78/318 (24%), Positives = 128/318 (40%), Gaps = 36/318 (11%)
Query: 218 LIGHESEVFICAWNP-VKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTE 276
           L GH   V   A  P   D + S S D T  +W +T    +D     I  R    +G + 
Sbjct: 11  LKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLT----RDETNYGIPQRAL--RGHSH 64
Query: 277 VPSNKDVTSLDWNNNGSFLATGSYDGYARIW-TSDGSLKSTLGQHKGPIFALKWNKRGNY 335
             S+  ++S     +G F  +GS+DG  R+W  + G+       H   + ++ ++     
Sbjct: 65  FVSDVVISS-----DGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQ 119
Query: 336 ILSAGVDKTTIIWDAASGQCEQ--QFSFHSAPALDVDWQSNTS---FASCSTDQHIHVCK 390
           I+S   DKT  +W+   G C+   Q   HS     V +  N+S     SC  D+ + V  
Sbjct: 120 IVSGSRDKTIKLWNTL-GVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWN 178
Query: 391 LHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHDLQAHNKEIY 450
           L + K   +  GHT  +N +   P G L AS   D    +W L++   ++ L   +  I 
Sbjct: 179 LANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDI-IN 237
Query: 451 TIKWSP--------TGPETSNPNMSLIFILK-------STLGQHKGP-IFALKWNKRGNY 494
            + +SP        TGP     ++    I+        ST  + + P   +L W+  G  
Sbjct: 238 ALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQT 297
Query: 495 ILSAGVDKTTIIWDAASG 512
           + +   D    +W    G
Sbjct: 298 LFAGYTDNLVRVWQVTIG 315

>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 317

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 58/228 (25%), Positives = 102/228 (44%), Gaps = 26/228 (11%)
Query: 308 TSDGSLKSTLGQHKGPIFALKWNKR-GNYILSAGVDKTTIIW-----DAASGQCEQQFSF 361
           T   +L+ TL  H G +  +    +  + ILSA  DKT I+W     +   G  ++    
Sbjct: 2   TEQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRG 61
Query: 362 HSAPALDVDWQSNTSFA-SCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLA 420
           HS    DV   S+  FA S S D  + +  L +    + F GHT +V ++ +      + 
Sbjct: 62  HSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIV 121
Query: 421 SCSDDMTLKIWSLDKDNCVHDLQ--AHNKEIYTIKWSPTGPETSNPNM------SLIFI- 471
           S S D T+K+W+     C + +Q  +H++ +  +++SP    +SNP +       L+ + 
Sbjct: 122 SGSRDKTIKLWN-TLGVCKYTVQDESHSEWVSCVRFSP---NSSNPIIVSCGWDKLVKVW 177
Query: 472 ------LKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQ 513
                 LK+    H G +  +  +  G+   S G D   ++WD   G+
Sbjct: 178 NLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGK 225

>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1 Length = 337

Iteration: 1
 Score = 55.8 bits (133), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 58/218 (26%), Positives = 92/218 (42%), Gaps = 29/218 (13%)
Query: 320 HKGPIFALKWNKRGNYILSA------------GVDKTTIIWDAASG----QCEQQFSFHS 363
           +K P+  L    R NYI S             G   T  IWD A+     + E   S  +
Sbjct: 84  NKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPA 143
Query: 364 APALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCS 423
             AL +   S   F SC +D +I V  LH+   V+ F+GHT+  + I     G  L +  
Sbjct: 144 CYALAISPDSKVCF-SCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGG 202
Query: 424 DDMTLKIWSLDKDNCVHDLQAHN--KEIYTIKWSPTGP----ETSNPNMSLIFILKS--- 474
            D T++ W L +      LQ H+   +I+++ + PTG        + N+ ++ + K    
Sbjct: 203 LDNTVRSWDLREG---RQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKY 259
Query: 475 TLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASG 512
            L  H+  + +LK+   G + +S G D     W    G
Sbjct: 260 QLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYG 297

>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61 Length = 321

Iteration: 1
 Score = 54.7 bits (130), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 63/269 (23%), Positives = 111/269 (41%), Gaps = 58/269 (21%)
Query: 122 LPLWDVERGECLNTLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKGT 181
           + LWD+E G+ + ++       +++AFSPD ++LA+G+    V+I+   +G+  +S    
Sbjct: 104 IRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSL--- 160
Query: 182 GGIFEVCWNSRGTPPNPPESMEVDASIEIPQSKATKLIGHESEVFICAWNPVKDFLASGS 241
                   ++RG                               +   A++P   +LASG+
Sbjct: 161 --------DTRG-----------------------------KFILSIAYSPDGKYLASGA 183
Query: 242 GDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFLATGSYD 301
            D    I+D+  +T K        L H +   G  +P    + SL ++ +   L T S D
Sbjct: 184 IDGIINIFDI--ATGK--------LLHTLE--GHAMP----IRSLTFSPDSQLLVTASDD 227
Query: 302 GYARIW-TSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFS 360
           GY +I+     +L  TL  H   +  + +     + +S+  DK+  +WD  +  C   F 
Sbjct: 228 GYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFF 287
Query: 361 FHSAPALDVDWQSNTS-FASCSTDQHIHV 388
            H      V +  N S   S   DQ IH+
Sbjct: 288 DHQDQVWGVKYNGNGSKIVSVGDDQEIHI 316

>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61 Length = 321

Iteration: 1
 Score = 53.5 bits (127), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 63/304 (20%), Positives = 122/304 (40%), Gaps = 30/304 (9%)
Query: 220 GHESEVFICAWNPVK----DFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGT 275
            H+  ++  AW   K    + + +GS D   ++W   D    +  +LQ  L       G 
Sbjct: 30  AHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRD----ERLDLQWSLE------GH 79
Query: 276 EVPSNKDVTSLDWNNNGSFLATGSYDGYARIWTSDGSLKSTLGQHKGPIFA--LKWNKRG 333
           ++     V S+D ++     A+ S D + R+W  +   K       GP+ A  L ++   
Sbjct: 80  QLG----VVSVDISHTLPIAASSSLDAHIRLWDLENG-KQIKSIDAGPVDAWTLAFSPDS 134
Query: 334 NYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTSF-ASCSTDQHIHVCKLH 392
            Y+ +        I+   SG+ E          L + +  +  + AS + D  I++  + 
Sbjct: 135 QYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIA 194
Query: 393 SDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHDLQAHNKEIYTI 452
           + K + + EGH   + ++ + P   LL + SDD  +KI+ +   N    L  H   +  +
Sbjct: 195 TGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNV 254
Query: 453 KWSPTGPETSNPNMSLIF--------ILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTT 504
            + P      + +                 T   H+  ++ +K+N  G+ I+S G D+  
Sbjct: 255 AFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEI 314
Query: 505 IIWD 508
            I+D
Sbjct: 315 HIYD 318

>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61 Length = 321

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 53/235 (22%), Positives = 97/235 (41%), Gaps = 16/235 (6%)
Query: 320 HKGPIFALKW--NKRGN--YILSAGVDKTTIIWDAASGQCEQQFSF--HSAPALDVDWQS 373
           H   I+++ W  NK+ N   +++  +D    +W     + + Q+S   H    + VD   
Sbjct: 31  HDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISH 90
Query: 374 NTSFA-SCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWS 432
               A S S D HI +  L + K +KS +    +   + + P    LA+ +    + I+ 
Sbjct: 91  TLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFG 150
Query: 433 LDKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIF--------ILKSTLGQHKGPIF 484
           ++     + L    K I +I +SP G   ++  +  I          L  TL  H  PI 
Sbjct: 151 VESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIR 210
Query: 485 ALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDW-QSNTSFAS 538
           +L ++     +++A  D    I+D          S H++  L+V +   +T F S
Sbjct: 211 SLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVS 265

>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif Length = 604

Iteration: 1
 Score = 52.8 bits (125), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 61/205 (29%), Positives = 90/205 (43%), Gaps = 22/205 (10%)
Query: 107 TGPAITNGEEVHRLTLPLWDVERGECL-NTLTRHTEPVYSVAFSP-DGKFLASGSFDKCV 164
           T P + +G +   LT+ LW+ E    L  T   H   V  VAF+P D    ASG  D+ V
Sbjct: 108 TKPYVLSGSD--DLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTV 165
Query: 165 HIWSARTGQLVHSYKGTGGIFEVCWNSRGTPPNPPESMEVDASIEIP--------QSKAT 216
            +WS   GQ   ++  T G  E   N     P P +   + AS ++         +S   
Sbjct: 166 KVWSL--GQSTPNFTLTTGQ-ERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVA 222
Query: 217 KLIGHESEVFICAWNPVKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRH--CISKGG 274
            L GH S V    ++P    + SGS D T +IW+   ST K  K L + L    CI+   
Sbjct: 223 TLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWN--SSTYKVEKTLNVGLERSWCIA--- 277
Query: 275 TEVPSNKDVTSLDWNNNGSFLATGS 299
           T     K+  +  ++N  + L+ G+
Sbjct: 278 THPTGRKNYIASGFDNGFTVLSLGN 302

>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif Length = 604

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 43/176 (24%), Positives = 70/176 (39%), Gaps = 34/176 (19%)
Query: 381 STDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVH 440
           S D  I V   ++ + V  FE H + + +I   P    + S SDD+T+K+W+ + +  + 
Sbjct: 74  SDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALE 133
Query: 441 D-LQAHNKEIYTIKWSPTGPET-----------------SNPNMSLIFILKSTLGQHKGP 482
              + H   +  + ++P  P T                 S PN +L      T GQ +G 
Sbjct: 134 QTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTL------TTGQERGV 187
Query: 483 IFALKWNKRGN-YILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTSFA 537
            +   +      Y+++A  D T  IWD  +  C      H          SN SFA
Sbjct: 188 NYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGH---------MSNVSFA 234

>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex Of The Copi Vesicular Coat Length = 814

Iteration: 1
 Score = 52.8 bits (125), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 61/205 (29%), Positives = 90/205 (43%), Gaps = 22/205 (10%)
Query: 107 TGPAITNGEEVHRLTLPLWDVERGECL-NTLTRHTEPVYSVAFSP-DGKFLASGSFDKCV 164
           T P + +G +   LT+ LW+ E    L  T   H   V  VAF+P D    ASG  D+ V
Sbjct: 108 TKPYVLSGSD--DLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTV 165
Query: 165 HIWSARTGQLVHSYKGTGGIFEVCWNSRGTPPNPPESMEVDASIEIP--------QSKAT 216
            +WS   GQ   ++  T G  E   N     P P +   + AS ++         +S   
Sbjct: 166 KVWS--LGQSTPNFTLTTGQ-ERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVA 222
Query: 217 KLIGHESEVFICAWNPVKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRH--CISKGG 274
            L GH S V    ++P    + SGS D T +IW+   ST K  K L + L    CI+   
Sbjct: 223 TLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWN--SSTYKVEKTLNVGLERSWCIA--- 277
Query: 275 TEVPSNKDVTSLDWNNNGSFLATGS 299
           T     K+  +  ++N  + L+ G+
Sbjct: 278 THPTGRKNYIASGFDNGFTVLSLGN 302

>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex Of The Copi Vesicular Coat Length = 814

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 43/176 (24%), Positives = 70/176 (39%), Gaps = 34/176 (19%)
Query: 381 STDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVH 440
           S D  I V   ++ + V  FE H + + +I   P    + S SDD+T+K+W+ + +  + 
Sbjct: 74  SDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALE 133
Query: 441 D-LQAHNKEIYTIKWSPTGPET-----------------SNPNMSLIFILKSTLGQHKGP 482
              + H   +  + ++P  P T                 S PN +L      T GQ +G 
Sbjct: 134 QTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTL------TTGQERGV 187
Query: 483 IFALKWNKRGN-YILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTSFA 537
            +   +      Y+++A  D T  IWD  +  C      H          SN SFA
Sbjct: 188 NYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGH---------MSNVSFA 234

>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6 Length = 310

Iteration: 1
 Score = 52.4 bits (124), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 61/205 (29%), Positives = 90/205 (43%), Gaps = 22/205 (10%)
Query: 107 TGPAITNGEEVHRLTLPLWDVERGECL-NTLTRHTEPVYSVAFSP-DGKFLASGSFDKCV 164
           T P + +G +   LT+ LW+ E    L  T   H   V  VAF+P D    ASG  D+ V
Sbjct: 108 TKPYVLSGSD--DLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTV 165
Query: 165 HIWSARTGQLVHSYKGTGGIFEVCWNSRGTPPNPPESMEVDASIEIP--------QSKAT 216
            +WS   GQ   ++  T G  E   N     P P +   + AS ++         +S   
Sbjct: 166 KVWSL--GQSTPNFTLTTGQ-ERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVA 222
Query: 217 KLIGHESEVFICAWNPVKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRH--CISKGG 274
            L GH S V    ++P    + SGS D T +IW+   ST K  K L + L    CI+   
Sbjct: 223 TLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWN--SSTYKVEKTLNVGLERSWCIA--- 277
Query: 275 TEVPSNKDVTSLDWNNNGSFLATGS 299
           T     K+  +  ++N  + L+ G+
Sbjct: 278 THPTGRKNYIASGFDNGFTVLSLGN 302

>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6 Length = 310

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 43/176 (24%), Positives = 70/176 (39%), Gaps = 34/176 (19%)
Query: 381 STDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVH 440
           S D  I V   ++ + V  FE H + + +I   P    + S SDD+T+K+W+ + +  + 
Sbjct: 74  SDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALE 133
Query: 441 D-LQAHNKEIYTIKWSPTGPET-----------------SNPNMSLIFILKSTLGQHKGP 482
              + H   +  + ++P  P T                 S PN +L      T GQ +G 
Sbjct: 134 QTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTL------TTGQERGV 187
Query: 483 IFALKWNKRGN-YILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTSFA 537
            +   +      Y+++A  D T  IWD  +  C      H          SN SFA
Sbjct: 188 NYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGH---------MSNVSFA 234

>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif Length = 304

Iteration: 1
 Score = 52.4 bits (124), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 61/205 (29%), Positives = 90/205 (43%), Gaps = 22/205 (10%)
Query: 107 TGPAITNGEEVHRLTLPLWDVERGECL-NTLTRHTEPVYSVAFSP-DGKFLASGSFDKCV 164
           T P + +G +   LT+ LW+ E    L  T   H   V  VAF+P D    ASG  D+ V
Sbjct: 108 TKPYVLSGSD--DLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTV 165
Query: 165 HIWSARTGQLVHSYKGTGGIFEVCWNSRGTPPNPPESMEVDASIEIP--------QSKAT 216
            +WS   GQ   ++  T G  E   N     P P +   + AS ++         +S   
Sbjct: 166 KVWSL--GQSTPNFTLTTGQ-ERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVA 222
Query: 217 KLIGHESEVFICAWNPVKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRH--CISKGG 274
            L GH S V    ++P    + SGS D T +IW+   ST K  K L + L    CI+   
Sbjct: 223 TLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWN--SSTYKVEKTLNVGLERSWCIA--- 277
Query: 275 TEVPSNKDVTSLDWNNNGSFLATGS 299
           T     K+  +  ++N  + L+ G+
Sbjct: 278 THPTGRKNYIASGFDNGFTVLSLGN 302

>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif Length = 304

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 43/176 (24%), Positives = 70/176 (39%), Gaps = 34/176 (19%)
Query: 381 STDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVH 440
           S D  I V   ++ + V  FE H + + +I   P    + S SDD+T+K+W+ + +  + 
Sbjct: 74  SDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALE 133
Query: 441 D-LQAHNKEIYTIKWSPTGPET-----------------SNPNMSLIFILKSTLGQHKGP 482
              + H   +  + ++P  P T                 S PN +L      T GQ +G 
Sbjct: 134 QTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTL------TTGQERGV 187
Query: 483 IFALKWNKRGN-YILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTSFA 537
            +   +      Y+++A  D T  IWD  +  C      H          SN SFA
Sbjct: 188 NYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGH---------MSNVSFA 234

>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction Between The Nucleoporin Nup98 And The Mrna Export Factor Rae1 Length = 368

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 33/120 (27%), Positives = 54/120 (45%), Gaps = 16/120 (13%)
Query: 235 DFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSF 294
           +FL +GS  +  R W++ DS +  PK  Q+                  V  + W+++GS 
Sbjct: 55  NFLIAGSWANDVRCWEVQDSGQTIPKAQQM--------------HTGPVLDVCWSDDGSK 100
Query: 295 LATGSYDGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNY--ILSAGVDKTTIIWDAAS 352
           + T S D  A++W    +    + QH  P+  + W K  NY  +++   DKT   WD  S
Sbjct: 101 VFTASCDKTAKMWDLSSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRS 160

>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction Between The Nucleoporin Nup98 And The Mrna Export Factor Rae1 Length = 368

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 26/83 (31%), Positives = 40/83 (48%), Gaps = 4/83 (4%)
Query: 292 GSFLATGSYDGYARIWT---SDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIW 348
           G+FL  GS+    R W    S  ++      H GP+  + W+  G+ + +A  DKT  +W
Sbjct: 54  GNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMW 113
Query: 349 DAASGQCEQQFSFHSAPALDVDW 371
           D +S Q   Q + H AP   + W
Sbjct: 114 DLSSNQ-AIQIAQHDAPVKTIHW 135

>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex Length = 401

Iteration: 1
 Score = 49.7 bits (117), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 43/175 (24%), Positives = 76/175 (43%), Gaps = 8/175 (4%)
Query: 286 LDWNNNGSFLATGSYDGYARIWTSDGSLKSTLGQHKGPIF--ALKWNKRGNYILSAGVDK 343
           LDW+N          + Y  +W +D    S L +     +  ++KW+  G++ LS G+  
Sbjct: 99  LDWSNLNVVAVALERNVY--VWNADSGSVSALAETDESTYVASVKWSHDGSF-LSVGLGN 155
Query: 344 TTI-IWDAASGQCEQQFSFHSAPALDVDWQSNT-SFASCSTDQHIHVCKLHSDKPVKSFE 401
             + I+D  S    +  + H A    + W  +  S  S S   H H  ++ ++  + + +
Sbjct: 156 GLVDIYDVESQTKLRTMAGHQARVGCLSWNRHVLSSGSRSGAIHHHDVRI-ANHQIGTLQ 214
Query: 402 GHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHDLQAHNKEIYTIKWSP 456
           GH++EV  + W   GL LAS  +D  ++IW             HN  +  + W P
Sbjct: 215 GHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCP 269

>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1 Length = 402

Iteration: 1
 Score = 49.7 bits (117), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 35/110 (31%), Positives = 52/110 (47%), Gaps = 14/110 (12%)
Query: 362 HSAPALDVDW--QSNTSFASCSTDQHIHV-------CKLHSDKPVKSFEGHTNEVNAIKW 412
           H+AP LD+ W   ++   AS S D  + V         L   +PV + EGHT  V  + W
Sbjct: 80  HTAPVLDIAWXPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAW 139
Query: 413 DP--QGLLLASCSDDMTLKIWSLDKDNCVHDL--QAHNKEIYTIKWSPTG 458
            P  Q +LL++  D++ L +W +     V  L    H   IY++ WS  G
Sbjct: 140 HPTAQNVLLSAGXDNVIL-VWDVGTGAAVLTLGPDVHPDTIYSVDWSRDG 188

>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1 Length = 402

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/167 (23%), Positives = 57/167 (34%), Gaps = 44/167 (26%)
Query: 394 DKPVKSFEGHTNEVNAIKWDPQG-LLLASCSDDMTLKIWSLDKDNCVHD-------LQAH 445
           DK V    GHT  V  I W P    ++AS S+D T+ +W +     V         L+ H
Sbjct: 71  DKNVPLVXGHTAPVLDIAWXPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGH 130
Query: 446 NKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTI 505
            K +  + W PT                                   N +LSAG D   +
Sbjct: 131 TKRVGIVAWHPTA---------------------------------QNVLLSAGXDNVIL 157
Query: 506 IWDAASGQCEQQFS--FHSAPALDVDWQSNTSFASCS-TDQHIHVCK 549
           +WD  +G          H      VDW  + +    S  D+ + V +
Sbjct: 158 VWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIE 204

>pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade Length = 379

Iteration: 1
 Score = 48.9 bits (115), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 59/261 (22%), Positives = 97/261 (37%), Gaps = 45/261 (17%)
Query: 292 GSFLATGSYDGYARIWTSDGS---LKSTLGQHKGPIFALKWN--KRGNYILSAGVDKTTI 346
           G  LAT S D   +I+  +G    L  TL  H+GP++ + W   K G  + S   D   +
Sbjct: 23  GKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVL 82
Query: 347 IWDAASGQCEQ--QFSFHSAPALDVDW---QSNTSFASCSTDQHIHVCKLHSDKPVKSF- 400
           IW   +G+  Q    + HSA    V W   +        S+D  + V +   +       
Sbjct: 83  IWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPII 142
Query: 401 -EGHTNEVNAIKWDP-------------QGLLLASCSDDMTLKIWSLDKDNCVH----DL 442
            + H   VN+  W P             +     +   D  +KIW  + D   +     L
Sbjct: 143 IDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTL 202
Query: 443 QAHNKEIYTIKWSPTG------PETSNPNMSLIFIL--------KSTLGQHKGP--IFAL 486
           + H+  +  + WSPT          S     +I+          K+ L + K P  ++  
Sbjct: 203 EGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRA 262
Query: 487 KWNKRGNYILSAGVDKTTIIW 507
            W+  GN +  +G D    +W
Sbjct: 263 SWSLSGNVLALSGGDNKVTLW 283

>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form Length = 402

Iteration: 1
 Score = 48.5 bits (114), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 35/110 (31%), Positives = 52/110 (47%), Gaps = 14/110 (12%)
Query: 362 HSAPALDVDW--QSNTSFASCSTDQHIHV-------CKLHSDKPVKSFEGHTNEVNAIKW 412
           H+AP LD+ W   ++   AS S D  + V         L   +PV + EGHT  V  + W
Sbjct: 80  HTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAW 139
Query: 413 DP--QGLLLASCSDDMTLKIWSLDKDNCVHDL--QAHNKEIYTIKWSPTG 458
            P  Q +LL++  D++ L +W +     V  L    H   IY++ WS  G
Sbjct: 140 HPTAQNVLLSAGCDNVIL-VWDVGTGAAVLTLGPDVHPDTIYSVDWSRDG 188

>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form Length = 402

Iteration: 1
 Score = 42.4 bits (98), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 39/165 (23%), Positives = 56/165 (33%), Gaps = 44/165 (26%)
Query: 394 DKPVKSFEGHTNEVNAIKWDPQG-LLLASCSDDMTLKIWSLDKDNCVHDL-------QAH 445
           DK V    GHT  V  I W P    ++AS S+D T+ +W +     V  L       + H
Sbjct: 71  DKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGH 130
Query: 446 NKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTI 505
            K +  + W PT                                   N +LSAG D   +
Sbjct: 131 TKRVGIVAWHPTA---------------------------------QNVLLSAGCDNVIL 157
Query: 506 IWDAASGQCEQQFS--FHSAPALDVDWQSNTSFASCST-DQHIHV 547
           +WD  +G          H      VDW  + +    S  D+ + V
Sbjct: 158 VWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRV 202

>pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE Copii Vesicular Coat, Native Version Length = 297

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 64/276 (23%), Positives = 104/276 (37%), Gaps = 46/276 (16%)
Query: 292 GSFLATGSYDGYARIWTSDGS---LKSTLGQHKGPIFALKWN--KRGNYILSAGVDKTTI 346
           G  LAT S D   +I+  +G    L  TL  H+GP++ + W   K G  + S   D   +
Sbjct: 21  GKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVL 80
Query: 347 IWDAASGQCEQ--QFSFHSAPALDVDW---QSNTSFASCSTDQHIHVCKLHSDKPVKSF- 400
           IW   +G+  Q    + HSA    V W   +        S+D  + V +   +       
Sbjct: 81  IWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPII 140
Query: 401 -EGHTNEVNAIKWDP-------------QGLLLASCSDDMTLKIWSLDKDNCVH----DL 442
            + H   VN+  W P             +     +   D  +KIW  + D   +     L
Sbjct: 141 IDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTL 200
Query: 443 QAHNKEIYTIKWSPTG------PETSNPNMSLIFIL--------KSTLGQHKGP--IFAL 486
           + H+  +  + WSPT          S     +I+          K+ L + K P  ++  
Sbjct: 201 EGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRA 260
Query: 487 KWNKRGNYI-LSAGVDKTTIIWDAASGQCEQQFSFH 521
            W+  GN + LS G +K T+  +   G+ E     H
Sbjct: 261 SWSLSGNVLALSGGDNKVTLWKENLEGKWEPAGEVH 296

>pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE Copii Vesicular Coat Length = 297

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 63/276 (22%), Positives = 104/276 (37%), Gaps = 46/276 (16%)
Query: 292 GSFLATGSYDGYARIWTSDGS---LKSTLGQHKGPIFALKWN--KRGNYILSAGVDKTTI 346
           G  +AT S D   +I+  +G    L  TL  H+GP++ + W   K G  + S   D   +
Sbjct: 21  GKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVM 80
Query: 347 IWDAASGQCEQ--QFSFHSAPALDVDW---QSNTSFASCSTDQHIHVCKLHSDKPVKSF- 400
           IW   +G+  Q    + HSA    V W   +        S+D  + V +   +       
Sbjct: 81  IWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPII 140
Query: 401 -EGHTNEVNAIKWDP-------------QGLLLASCSDDMTLKIWSLDKDNCVH----DL 442
            + H   VN+  W P             +     +   D  +KIW  + D   +     L
Sbjct: 141 IDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTL 200
Query: 443 QAHNKEIYTIKWSPT------GPETSNPNMSLIFIL--------KSTLGQHKGP--IFAL 486
           + H+  +  + WSPT          S     +I+          K+ L + K P  ++  
Sbjct: 201 EGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRA 260
Query: 487 KWNKRGNYI-LSAGVDKTTIIWDAASGQCEQQFSFH 521
            W+  GN + LS G +K T+  +   G+ E     H
Sbjct: 261 SWSLSGNVLALSGGDNKVTLWKENLEGKWEPAGEVH 296

>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s Reg Particle Of The Proteasome Length = 417

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 47/218 (21%), Positives = 81/218 (37%), Gaps = 38/218 (17%)
Query: 329 WNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTSFASCSTDQHIHV 388
           + K G+++  A +D    +++       +        A+D        F   +T+  I V
Sbjct: 61  FEKVGSHLYKARLDGHDFLFNTIIRDGSKMLKRADYTAVDTAKLQMRRFILGTTEGDIKV 120
Query: 389 CKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHDLQAHNKE 448
              + +   +  + H +E+  +K+ P G  L S S DM LKIWS+               
Sbjct: 121 LDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSV--------------- 165
Query: 449 IYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWD 508
                      + SNP          TL  H+  +  +    RG  +LSA +D T  +W+
Sbjct: 166 ----------KDGSNP---------RTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWE 206
Query: 509 AASGQCEQQFSFHSAPALDVDWQSNTSFASCSTDQHIH 546
             +G     F+    P   V    N+      TD+ +H
Sbjct: 207 CGTGTTIHTFNRKENPHDGV----NSIALFVGTDRQLH 240

>pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice Length = 753

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 60/262 (22%), Positives = 99/262 (37%), Gaps = 47/262 (17%)
Query: 292 GSFLATGSYDGYARIWTSDGS---LKSTLGQHKGPIFALKWN--KRGNYILSAGVDKTTI 346
           G  LAT S D   +I+  +G    L  TL  H+GP++ + W   K G  + S   D   +
Sbjct: 21  GKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVL 80
Query: 347 IWDAASGQCEQ--QFSFHSAPALDVDW---QSNTSFASCSTDQHIHVCKLHSD---KPVK 398
           IW   +G+  Q    + HSA    V W   +        S+D  + V +   +    P+ 
Sbjct: 81  IWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPI- 139
Query: 399 SFEGHTNEVNAIKWDP-------------QGLLLASCSDDMTLKIWSLDKDNCVH----D 441
             + H   VN+  W P             +     +   D  +KIW  + D   +     
Sbjct: 140 IIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLEST 199
Query: 442 LQAHNKEIYTIKWSPTG------PETSNPNMSLIFIL--------KSTLGQHKGP--IFA 485
           L+ H+  +  + WSPT          S     +I+          K+ L + K P  ++ 
Sbjct: 200 LEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWR 259
Query: 486 LKWNKRGNYILSAGVDKTTIIW 507
             W+  GN +  +G D    +W
Sbjct: 260 ASWSLSGNVLALSGGDNKVTLW 281

>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14 Length = 420

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 47/218 (21%), Positives = 81/218 (37%), Gaps = 38/218 (17%)
Query: 329 WNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTSFASCSTDQHIHV 388
           + K G+++  A +D    +++       +        A+D        F   +T+  I V
Sbjct: 64  FEKVGSHLYKARLDGHDFLFNTIIRDGSKMLKRADYTAVDTAKLQMRRFILGTTEGDIKV 123
Query: 389 CKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHDLQAHNKE 448
              + +   +  + H +E+  +K+ P G  L S S DM LKIWS+               
Sbjct: 124 LDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSV--------------- 168
Query: 449 IYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWD 508
                      + SNP          TL  H+  +  +    RG  +LSA +D T  +W+
Sbjct: 169 ----------KDGSNP---------RTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWE 209
Query: 509 AASGQCEQQFSFHSAPALDVDWQSNTSFASCSTDQHIH 546
             +G     F+    P   V    N+      TD+ +H
Sbjct: 210 CGTGTTIHTFNRKENPHDGV----NSIALFVGTDRQLH 243

>pdb|2PM7|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE Copii Vesicular Coat, Selenomethionine Version Length = 297

Iteration: 1
 Score = 46.2 bits (108), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 63/276 (22%), Positives = 102/276 (36%), Gaps = 46/276 (16%)
Query: 292 GSFLATGSYDGYARIWTSDGS---LKSTLGQHKGPIFALKWN--KRGNYILSAGVDKTTI 346
           G   AT S D   +I+  +G    L  TL  H+GP++ + W   K G  + S   D    
Sbjct: 21  GKRXATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVX 80
Query: 347 IWDAASGQCEQ--QFSFHSAPALDVDW---QSNTSFASCSTDQHIHVCKLHSDKPVKSF- 400
           IW   +G+  Q    + HSA    V W   +        S+D  + V +   +       
Sbjct: 81  IWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPXLLVASSDGKVSVVEFKENGTTSPII 140
Query: 401 -EGHTNEVNAIKWDP-------------QGLLLASCSDDMTLKIWSLDKDNCVH----DL 442
            + H   VN+  W P             +     +   D  +KIW  + D   +     L
Sbjct: 141 IDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTL 200
Query: 443 QAHNKEIYTIKWSPT------GPETSNPNMSLIFIL--------KSTLGQHKGP--IFAL 486
           + H+  +  + WSPT          S     +I+          K+ L + K P  ++  
Sbjct: 201 EGHSDWVRDVAWSPTVLLRSYXASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRA 260
Query: 487 KWNKRGNYI-LSAGVDKTTIIWDAASGQCEQQFSFH 521
            W+  GN + LS G +K T+  +   G+ E     H
Sbjct: 261 SWSLSGNVLALSGGDNKVTLWKENLEGKWEPAGEVH 296

>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex Length = 408

Iteration: 1
 Score = 45.8 bits (107), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 48/187 (25%), Positives = 69/187 (36%), Gaps = 26/187 (13%)
Query: 139 HTEPVYSVAFSP-DGKFLASGSFDKCVHIWSARTGQLVHSYKGTGGIFEVCWNSRGTPPN 197
           H   V +V + P D     S SFDK + +W   T Q    +      FE    S    P 
Sbjct: 98  HRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFN-----FEETVYSHHMSPV 152
Query: 198 PPESMEVDASIEIPQSKATKLI---------GHESEVFICAWNPVKDF-LASGSGDSTAR 247
             +   V      P+ +   L          GH  E+   +W+P  D+ LA+ S DS  +
Sbjct: 153 STKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVK 212
Query: 248 IWDMTDSTKKDPKELQIVLRHCISKGGTEVPS-----NKDVTSLDWNNNGSFLATGSYDG 302
           +WD+     +      I L     K    V S     N  V  L + ++G  L T   D 
Sbjct: 213 LWDV-----RRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDN 267
Query: 303 YARIWTS 309
             R+W S
Sbjct: 268 RMRLWNS 274

>pdb|3EWE|A Chain A, Crystal Structure Of The Nup85SEH1 COMPLEX Length = 349

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/95 (33%), Positives = 49/95 (51%), Gaps = 15/95 (15%)
Query: 378 ASCSTDQHIHVCKLHSD----KPVKSFEGHTNEVNAIKW-DPQ-GLLLASCSDDMTLKIW 431
           A+CS+DQHI V KL  D    +   S+  H + + AI W  P+ G ++AS S D T+K+W
Sbjct: 25  ATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLW 84
Query: 432 SLDKD---------NCVHDLQAHNKEIYTIKWSPT 457
             D D         N +  L      +Y++K++P 
Sbjct: 85  EEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPA 119

>pdb|3F3P|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1, Space Group P21212 Length = 351

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/95 (33%), Positives = 49/95 (51%), Gaps = 15/95 (15%)
Query: 378 ASCSTDQHIHVCKLHSD----KPVKSFEGHTNEVNAIKW-DPQ-GLLLASCSDDMTLKIW 431
           A+CS+DQHI V KL  D    +   S+  H + + AI W  P+ G ++AS S D T+K+W
Sbjct: 27  ATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLW 86
Query: 432 SLDKD---------NCVHDLQAHNKEIYTIKWSPT 457
             D D         N +  L      +Y++K++P 
Sbjct: 87  EEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPA 121

>pdb|3F3F|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1, Space Group P21 Length = 351

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/95 (33%), Positives = 49/95 (51%), Gaps = 15/95 (15%)
Query: 378 ASCSTDQHIHVCKLHSD----KPVKSFEGHTNEVNAIKW-DPQ-GLLLASCSDDMTLKIW 431
           A+CS+DQHI V KL  D    +   S+  H + + AI W  P+ G ++AS S D T+K+W
Sbjct: 27  ATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLW 86
Query: 432 SLDKD---------NCVHDLQAHNKEIYTIKWSPT 457
             D D         N +  L      +Y++K++P 
Sbjct: 87  EEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPA 121

>pdb|3DXK|C Chain C, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR Ck0944636 Length = 372

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 54/239 (22%), Positives = 90/239 (37%), Gaps = 35/239 (14%)
Query: 317 LGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFH--SAPALDVDWQSN 374
           L +H G +  + W    N I++ G D+   +W       +        +  A  V W  N
Sbjct: 48  LKEHNGQVTGIDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPN 107
Query: 375 -TSFASCSTDQHIHVCKL----------HSDKPVKSFEGHTNEVNAIKWDPQGLLLASCS 423
              FA  S  + I +C            H  KP++S       V ++ W P  +LLA+ S
Sbjct: 108 EKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRS------TVLSLDWHPNSVLLAAGS 161
Query: 424 DDMTLKIWSLDKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPI 483
            D   +I+S           A+ KE+   + +PT   +  P   L+F   S+ G   G  
Sbjct: 162 CDFKCRIFS-----------AYIKEVEE-RPAPTPWGSKMPFGELMFESSSSCGWVHGVC 209
Query: 484 FALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTSFASCSTD 542
           F+      G+ +     D T  + DA         +  + P L V + + +S  +   D
Sbjct: 210 FS----ANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAGHD 264

>pdb|1K8K|C Chain C, Crystal Structure Of Arp23 COMPLEX Length = 372

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 54/239 (22%), Positives = 90/239 (37%), Gaps = 35/239 (14%)
Query: 317 LGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFH--SAPALDVDWQSN 374
           L +H G +  + W    N I++ G D+   +W       +        +  A  V W  N
Sbjct: 48  LKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPN 107
Query: 375 -TSFASCSTDQHIHVCKL----------HSDKPVKSFEGHTNEVNAIKWDPQGLLLASCS 423
              FA  S  + I +C            H  KP++S       V ++ W P  +LLA+ S
Sbjct: 108 EKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRS------TVLSLDWHPNSVLLAAGS 161
Query: 424 DDMTLKIWSLDKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPI 483
            D   +I+S           A+ KE+   + +PT   +  P   L+F   S+ G   G  
Sbjct: 162 CDFKCRIFS-----------AYIKEVEE-RPAPTPWGSKMPFGELMFESSSSCGWVHGVC 209
Query: 484 FALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTSFASCSTD 542
           F+      G+ +     D T  + DA         +  + P L V + + +S  +   D
Sbjct: 210 FS----ANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAGHD 264

>pdb|1PI6|A Chain A, Yeast Actin Interacting Protein 1 (Aip1), Orthorhombic Crystal Form Length = 615

Iteration: 1
 Score = 42.7 bits (99), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 38/147 (25%), Positives = 62/147 (42%), Gaps = 15/147 (10%)
Query: 321 KGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSA----PALDVDWQSNTS 376
           +G IFAL W     +  + G D T  +WD  + +C Q+++          + V    N  
Sbjct: 253 QGGIFALSWLDSQKF-ATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGR 311
Query: 377 FASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWS---- 432
             S S D  ++  +L  D+ +K+  GH   + A+  +P    L S S D  +  WS    
Sbjct: 312 IISLSLDGTLNFYELGHDEVLKTISGHNKGITALTVNP----LISGSYDGRIMEWSSSSM 367
Query: 433 -LDKDNCVHDL-QAHNKEIYTIKWSPT 457
             D  N +  L  +  +E  +I W  T
Sbjct: 368 HQDHSNLIVSLDNSKAQEYSSISWDDT 394

>pdb|1S4U|X Chain X, Crystal Structure Analysis Of The Beta-Propeller Protein Ski8p Length = 407

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 81/375 (21%), Positives = 140/375 (37%), Gaps = 82/375 (21%)
Query: 193 GTPPNPPESMEVDASIEIPQSKATKLIGHESEVFICAWNPVKDFLASGSGDSTARIWDMT 252
           G+P  P  S      + I  + A K   H++++F  + +    F  S SGD   ++WD  
Sbjct: 4   GSPEFPGMS-----KVFIATANAGK--AHDADIF--SVSACNSFTVSCSGDGYLKVWDNK 54
Query: 253 DSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSF----LATGSYDG---YAR 305
               ++PK+      H + K G        V  L      +F    +AT S+ G   + R
Sbjct: 55  LLDNENPKDKS--YSHFVHKSGLH-----HVDVLQAIERDAFELCLVATTSFSGDLLFYR 107
Query: 306 IWTSDGSLKSTLGQ--------HKGPIFALKWNKRGNYILS-----AGVDKTTIIWDAAS 352
           I   D + K    +         K   +ALKW    + +LS       V  TT IW    
Sbjct: 108 ITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHP 167
Query: 353 GQCEQQ-FSFHSAPALD-----------------VDWQSNTSFASCSTDQHIHVCKLHSD 394
              E    + + +P L+                 VD       A+   +  + + +L + 
Sbjct: 168 FADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERGLIATGFNNGTVQISELSTL 227
Query: 395 KPVKSFE------GHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHDLQAHNKE 448
           +P+ +FE       ++N + ++K+ PQG LLA   D  +          C+         
Sbjct: 228 RPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSF--------GCI--------T 271
Query: 449 IYTIKWSPTGPETSNPNMSLIFILKSTLGQ--HKGPIFALKWNKRGNYILSAGVDKTTII 506
           +Y  ++       S P  S     +++LG+  H   + +L +N  G  + SAG D     
Sbjct: 272 LYETEFGERIGSLSVPTHS----SQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRF 327
Query: 507 WDAASGQCEQQFSFH 521
           WD  + +     + H
Sbjct: 328 WDVKTKERITTLNMH 342

>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor Eif3i Complex With Eif3b C-Terminus (655-700) Length = 369

Iteration: 1
 Score = 42.0 bits (97), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 22/76 (28%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
Query: 281 KDVTSLDWNNNGSFLATGSYDGYARIWTS-DGSLKSTLGQHKGPIFALKWNKRGNYILSA 339
           + +T + +N  G  L + S D  A +W S +G    TL  H G I+++  +    Y ++ 
Sbjct: 33  RPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTG 92
Query: 340 GVDKTTIIWDAASGQC 355
             D +  +WD ++GQC
Sbjct: 93  SADYSIKLWDVSNGQC 108

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	602
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	100.0
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	100.0
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	100.0
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	100.0
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	100.0
3jrp_A	379	Fusion protein of protein transport protein SEC13	100.0
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	100.0
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	100.0
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	100.0
1k32_A	1045	Tricorn protease; protein degradation, substrate g	100.0
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	100.0
3jro_A	753	Fusion protein of protein transport protein SEC13	100.0
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	100.0
3jrp_A	379	Fusion protein of protein transport protein SEC13	100.0
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	100.0
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	100.0
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	100.0
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	100.0
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	100.0
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	100.0
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	100.0
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	100.0
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	100.0
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	100.0
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	100.0
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	100.0
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	100.0
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	100.0
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	100.0
1k32_A	1045	Tricorn protease; protein degradation, substrate g	100.0
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	100.0
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	100.0
2xtc_A	90	F-box-like/WD repeat-containing protein TBL1X; tra	100.0
3jro_A	753	Fusion protein of protein transport protein SEC13	100.0
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.97
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.97
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.97
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.96
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.96
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.96
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.96
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.95
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.94
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.94
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.94
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.93
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.93
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.93
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.93
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.93
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.92
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.92
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.92
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.92
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.91
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.91
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.9
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.9
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.9
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.9
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.9
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.9
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.89
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.88
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.88
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.87
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.87
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.87
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.86
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.85
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.85
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.85
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.84
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.84
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.83
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.83
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.82
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.8
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.8
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.79
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.79
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.79
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.78
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.78
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.77
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.76
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.76
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.74
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.74
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.73
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.72
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.71
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.71
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.7
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.7
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.7
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.7
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.68
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.68
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.67
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.67
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.67
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.66
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.66
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.66
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.63
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.62
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.6
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.6
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.6
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.6
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.58
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	99.56
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	99.55
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.51
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	99.51
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.51
4a2l_A	795	BT_4663, two-component system sensor histidine kin	99.5
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.5
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.49
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.48
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.48
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.47
4a2l_A	795	BT_4663, two-component system sensor histidine kin	99.47
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.47
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.45
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.45
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.43
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.43
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.42
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	99.41
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.41
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	99.39
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	99.38
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	99.38
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	99.38
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.38
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	99.36
3v9f_A	781	Two-component system sensor histidine kinase/RESP	99.34
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	99.34
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	99.3
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.29
3v9f_A	781	Two-component system sensor histidine kinase/RESP	99.28
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	99.24
2ece_A	462	462AA long hypothetical selenium-binding protein;	99.21
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	99.09
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	99.08
2ece_A	462	462AA long hypothetical selenium-binding protein;	99.06
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	99.04
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	99.02
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	99.01
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	98.99
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	98.99
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.97
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	98.97
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	98.95
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.95
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.94
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.93
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.93
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	98.91
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	98.91
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.9
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.89
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	98.88
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.84
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.81
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.8
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.8
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	98.76
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	98.7
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.66
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	98.62
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.61
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	98.61
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.58
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	98.58
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.56
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.52
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	98.51
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.49
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	98.47
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	98.45
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	98.44
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	98.42
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	98.42
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.39
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.35
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.33
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	98.33
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	98.32
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	98.31
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	98.31
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	98.27
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	98.26
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	98.26
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	98.24
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	98.14
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	98.03
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	98.01
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	98.0
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	97.99
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	97.97
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	97.95
3kya_A	496	Putative phosphatase; structural genomics, joint c	97.94
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	97.89
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	97.86
3kya_A	496	Putative phosphatase; structural genomics, joint c	97.85
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	97.85
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	97.83
3ott_A	758	Two-component system sensor histidine kinase; beta	97.81
3ott_A	758	Two-component system sensor histidine kinase; beta	97.78
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	97.74
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	97.74
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	97.71
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	97.71
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	97.67
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	97.64
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	97.61
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	97.44
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	97.43
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	97.41
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	97.38
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	97.31
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	97.11
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	97.1
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	96.95
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	96.93
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	96.9
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	96.87
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	96.85
1uuj_A	88	Platelet-activating factor acetylhydrolase IB ALP	96.82
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	96.8
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	96.77
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	96.76
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	96.73
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	96.66
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	96.65
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	96.63
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	96.62
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	96.58
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	96.41
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	96.35
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	96.27
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	96.09
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	96.04
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	95.63
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	95.19
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	94.96
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	94.45
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	94.4
3qhy_B	282	Beta-lactamase inhibitory protein II; enyzme-inhib	93.65
3qhy_B	282	Beta-lactamase inhibitory protein II; enyzme-inhib	93.56
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	93.53
4hvt_A	711	Ritya.17583.B, post-proline cleaving enzyme; ssgci	93.45
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	93.36
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	92.71
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	90.24
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	88.71
1suu_A	312	DNA gyrase subunit A; topoisomerase,DNA gyrase, be	87.49
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	87.26
3b7f_A	394	Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop	84.87
4gq2_M	950	Nucleoporin NUP120; beta propeller alpha helical,	83.97
3q6k_A	381	43.2 kDa salivary protein; beta propeller, binding	82.51
4gq2_M	950	Nucleoporin NUP120; beta propeller alpha helical,	81.58
3no0_A	276	DNA gyrase subunit A; DNA topology, topoisomerase,	80.46

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=1.9e-59  Score=487.56  Aligned_cols=463  Identities=19%  Similarity=0.258  Sum_probs=369.4

Q ss_pred             CCCcccCCcceeccceeeeecccceeeeeeeccCCceEEEEECCCCCeEEEeeCCceEEEEecCCce--eEEEeec-cCc
Q psy12697        107 TGPAITNGEEVHRLTLPLWDVERGECLNTLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQ--LVHSYKG-TGG  183 (602)
Q Consensus       107 ~~~~~~~~~~~~~~~i~vwd~~~~~~~~~l~~h~~~V~~~~~s~d~~~l~s~~~d~~v~iwd~~~~~--~~~~~~~-~~~  183 (602)
                      ++..++.+.   ..+|++||+.+++....+.+|...|++++|||||++||+|+.|++|+|||+.+++  ....+.. .+.
T Consensus        29 dg~~l~~~~---~~~v~l~~~~~~~~~~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~  105 (611)
T 1nr0_A           29 AGDKIQYCN---GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGP  105 (611)
T ss_dssp             TSSEEEEEE---TTEEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSC
T ss_pred             CCCEEEeCC---CCEEEEecCCCcccCeEecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcceeeEeecccCCc
Confidence            344444433   3589999999999999999999999999999999999999999999999997654  3445554 467


Q ss_pred             eEEEEeCCCCCCCCCCCCccc-cccc--cccCCcceEeeCCCcceEEEEEcCCCC-EEEEeeCCCcEEEEeCCCCCCCCC
Q psy12697        184 IFEVCWNSRGTPPNPPESMEV-DASI--EIPQSKATKLIGHESEVFICAWNPVKD-FLASGSGDSTARIWDMTDSTKKDP  259 (602)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~l~~h~~~v~~~~~~~~~~-~l~s~~~dg~i~iw~~~~~~~~~~  259 (602)
                      +..++|+|++..+........ ...+  .-.......+.+|...|.+++|+|++. .|++++.|++|++||..+.+..  
T Consensus       106 v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~--  183 (611)
T 1nr0_A          106 VKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFK--  183 (611)
T ss_dssp             EEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEE--
T ss_pred             eEEEEECCCCCEEEEEECCCCceeEEEEeeCCCCcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEe--
Confidence            999999999987664433211 1111  112334456789999999999999986 6999999999999997653211  


Q ss_pred             ccceEEEEEEecCCCcccCCCCceeEEeeCCCCCeEEEEeCCCeEEEEcCC-Ccceeecc-------cccCCeEEEEEcc
Q psy12697        260 KELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFLATGSYDGYARIWTSD-GSLKSTLG-------QHKGPIFALKWNK  331 (602)
Q Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~-~~~~~~~~-------~~~~~i~~~~~~~  331 (602)
                         .           ....|...|.+++|+|++++|++|+.|+.|++||.. +.....+.       +|.+.|.+++|+|
T Consensus       184 ---~-----------~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~sp  249 (611)
T 1nr0_A          184 ---S-----------TFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSP  249 (611)
T ss_dssp             ---E-----------EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECT
T ss_pred             ---e-----------eeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECC
Confidence               0           112467889999999999999999999999999975 55555553       7999999999999


Q ss_pred             CCCEEEEEecCCcEEEEeCCCCceeEEeeec---cCCeeeeeccCCCeEEEeeCCCeEEEEEcCCCceeeEeccCCCCeE
Q psy12697        332 RGNYILSAGVDKTTIIWDAASGQCEQQFSFH---SAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEGHTNEVN  408 (602)
Q Consensus       332 ~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~  408 (602)
                      ++++|++++.|++|++||+.++++...+..+   ......+.| .+..+++++.|+.+++|+...++....+.+|...|.
T Consensus       250 dg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~  328 (611)
T 1nr0_A          250 DGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIW-TKQALVSISANGFINFVNPELGSIDQVRYGHNKAIT  328 (611)
T ss_dssp             TSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEE-CSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEE
T ss_pred             CCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEE-cCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEE
Confidence            9999999999999999999999988877643   234455666 567799999999999999999988889999999999


Q ss_pred             EEEECCCCCEEEEEECCCeEEEEeCCCCeeeEee-ccccccEEEEEECCCCCCCCCCCcceeeeee--------------
Q psy12697        409 AIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHDL-QAHNKEIYTIKWSPTGPETSNPNMSLIFILK--------------  473 (602)
Q Consensus       409 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~--------------  473 (602)
                      +++|+|+|++|++++.|+.|++||+.+++....+ ..|...+.+++|++++..........+..+.              
T Consensus       329 ~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~  408 (611)
T 1nr0_A          329 ALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVAN  408 (611)
T ss_dssp             EEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEE
T ss_pred             EEEEeCCCCEEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeee
Confidence            9999999999999999999999999998877665 5688889999998765432211111100000              


Q ss_pred             ---------------------------------eccCCccCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCce--eeee
Q psy12697        474 ---------------------------------STLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQC--EQQF  518 (602)
Q Consensus       474 ---------------------------------~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~~~~~~--~~~~  518 (602)
                                                       .....|...+.+++|+|||++|++|+.|++|++||+.++..  +.. 
T Consensus       409 ~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~~~~-  487 (611)
T 1nr0_A          409 KLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKT-  487 (611)
T ss_dssp             ECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEE-
T ss_pred             ecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCceeeeec-
Confidence                                             00012456789999999999999999999999999987654  234 


Q ss_pred             cccCCCeeEeeecCCc-eEEEeeCCCcEEEeecCC-CCceee--eecccccceEEEEecCCcEEEEEECCCCCeEEEecc
Q psy12697        519 SFHSAPALDVDWQSNT-SFASCSTDQHIHVCKLHS-DKPVKS--FEGHTTGQLVHSYKGTGGIFEVCWNSRGDKVGASAS  594 (602)
Q Consensus       519 ~~~~~~v~~~~~s~~~-~l~~~~~d~~i~iw~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~  594 (602)
                      .+|...|++++|+||+ +|++++.|+.|++|++.+ ++.+..  +.+|           ...|.+++|+|||++||+++.
T Consensus       488 ~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~~~~~~~~~~~H-----------~~~V~~v~fspdg~~lasgs~  556 (611)
T 1nr0_A          488 IVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFH-----------TAKVACVSWSPDNVRLATGSL  556 (611)
T ss_dssp             EECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCC-----------SSCEEEEEECTTSSEEEEEET
T ss_pred             cCCCCceEEEEECCCCCEEEEEcCCCCEEEEEcCCCCceeeeeeeeec-----------ccceeEEEECCCCCEEEEEEC
Confidence            6799999999999999 999999999999999976 433322  1123           477999999999999999999


Q ss_pred             CCeEEee
Q psy12697        595 DGSVFKN  601 (602)
Q Consensus       595 dg~v~i~  601 (602)
                      |++|+|+
T Consensus       557 D~~v~lW  563 (611)
T 1nr0_A          557 DNSVIVW  563 (611)
T ss_dssp             TSCEEEE
T ss_pred             CCcEEEE
Confidence            9999985

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=6.4e-59  Score=483.34  Aligned_cols=459  Identities=27%  Similarity=0.482  Sum_probs=385.6

Q ss_pred             CCCCcccCCcceeccceeeeecccceeeeeeeccCCceEEEEECCCCCeEEEeeCCceEEEEecCCceeEEEeec-cCce
Q psy12697        106 STGPAITNGEEVHRLTLPLWDVERGECLNTLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKG-TGGI  184 (602)
Q Consensus       106 ~~~~~~~~~~~~~~~~i~vwd~~~~~~~~~l~~h~~~V~~~~~s~d~~~l~s~~~d~~v~iwd~~~~~~~~~~~~-~~~~  184 (602)
                      +++.+++.+.  .+++|+|||. +++++++|.+|.+.|++++|+||+++||+++.|++|+|||. +++.+..+.. ...+
T Consensus        26 pdg~~las~~--~d~~v~iWd~-~~~~~~~l~gh~~~V~~l~fspdg~~las~~~d~~i~vWd~-~~~~~~~~~~~~~~v  101 (577)
T 2ymu_A           26 PDGQTIASAS--DDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSV  101 (577)
T ss_dssp             TTSSCEEEEE--TTSEEEEECT-TSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEET-TSCEEEEECCCSSCE
T ss_pred             CCCCEEEEEe--CCCEEEEEEC-CCCEEEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEEC-CCCEEEEEECCCCCE
Confidence            3455666553  4678999994 78999999999999999999999999999999999999996 5677777765 4567


Q ss_pred             EEEEeCCCCCCCCCCCCccc------------------------------------------------------------
Q psy12697        185 FEVCWNSRGTPPNPPESMEV------------------------------------------------------------  204 (602)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~------------------------------------------------------------  204 (602)
                      ..++|+|++..+........                                                            
T Consensus       102 ~~~~~s~d~~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (577)
T 2ymu_A          102 RGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSS  181 (577)
T ss_dssp             EEEEECTTSSEEEEEETTSCEEEEETTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEECTTSCEEEEEECCSS
T ss_pred             EEEEECCCCCEEEEEcCCCceeecccccceeeeccCCCCceeeeeeecCCccceecccccceeccccceeeeeeccCCCc
Confidence            88889888754432110000                                                            


Q ss_pred             -------------------cc---cccccCCcceEeeCCCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCccc
Q psy12697        205 -------------------DA---SIEIPQSKATKLIGHESEVFICAWNPVKDFLASGSGDSTARIWDMTDSTKKDPKEL  262 (602)
Q Consensus       205 -------------------~~---~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~  262 (602)
                                         +.   .++........+.+|...|.+++|+|++++|++++.|+.|++|+.....      .
T Consensus       182 ~v~~~~~~~~~~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~i~~w~~~~~~------~  255 (577)
T 2ymu_A          182 SVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQL------L  255 (577)
T ss_dssp             CEEEEEECTTSSCEEEEETTSEEEEECTTSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCE------E
T ss_pred             ceeeeeecCCCCEEEEEcCCCEEEEEeCCCcEEEEEecCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCCE------E
Confidence                               00   0011223345567899999999999999999999999999999964211      1


Q ss_pred             eEEEEEEecCCCcccCCCCceeEEeeCCCCCeEEEEeCCCeEEEEcCCCcceeecccccCCeEEEEEccCCCEEEEEecC
Q psy12697        263 QIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFLATGSYDGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVD  342 (602)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d  342 (602)
                      .           ....|...|.+++|+|+++.+++++.|+.|++|+.+++....+.+|...|.+++|+|++++|++++.|
T Consensus       256 ~-----------~~~~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d  324 (577)
T 2ymu_A          256 Q-----------TLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDD  324 (577)
T ss_dssp             E-----------EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred             E-----------EEecCCCCEEEEEEcCCCCEEEEEeCCCEEEEEeCCCcEEEEEecCCCCeEEEEECCCCCEEEEEeCC
Confidence            1           11235688999999999999999999999999999999889999999999999999999999999999


Q ss_pred             CcEEEEeCCCCceeEEeeeccCCeeeeeccCCC-eEEEeeCCCeEEEEEcCCCceeeEeccCCCCeEEEEECCCCCEEEE
Q psy12697        343 KTTIIWDAASGQCEQQFSFHSAPALDVDWQSNT-SFASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLAS  421 (602)
Q Consensus       343 g~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~  421 (602)
                      +.|++||... ..+..+..+...+.+++|+|++ .+++++.++.+++||. +++.+..+.+|...|.+++|+|++++|++
T Consensus       325 ~~i~~w~~~~-~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~dg~~l~~  402 (577)
T 2ymu_A          325 KTVKLWNRNG-QHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIAS  402 (577)
T ss_dssp             SCEEEEETTS-CEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TCCEEEEEECCSSCEEEEEECTTSSCEEE
T ss_pred             CeEEEEeCCC-CeeEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcC-CCCEEEEecCCCCCeEEEEECCCCCEEEE
Confidence            9999999764 4566778889999999999985 5788999999999995 56788889999999999999999999999


Q ss_pred             EECCCeEEEEeCCCCeeeEeeccccccEEEEEECCCCCCCCCCCcce-eee------eeeccCCccCCeEEEEEccCCCE
Q psy12697        422 CSDDMTLKIWSLDKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSL-IFI------LKSTLGQHKGPIFALKWNKRGNY  494 (602)
Q Consensus       422 ~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~-~~~------~~~~~~~~~~~v~~i~~s~~~~~  494 (602)
                      ++.|+.|++||. +++.+..+..|...+.+++|+|++..++...... +..      ....+.+|...|.+++|+|++++
T Consensus       403 ~~~d~~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~v~~~~~spd~~~  481 (577)
T 2ymu_A          403 ASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQT  481 (577)
T ss_dssp             EETTSEEEEECT-TCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTSCEEEEEECCSSCEEEEEECTTSCE
T ss_pred             EeCCCEEEEEeC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEECCCCEEEEEcCCCCCEEEEEEcCCCCE
Confidence            999999999995 5678888999999999999999998765443322 222      22455679999999999999999


Q ss_pred             EEEEeCCCeEEEEeCCCCceeeeecccCCCeeEeeecCCc-eEEEeeCCCcEEEeecCCCCceeeeecccccceEEEEec
Q psy12697        495 ILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNT-SFASCSTDQHIHVCKLHSDKPVKSFEGHTTGQLVHSYKG  573 (602)
Q Consensus       495 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~-~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~  573 (602)
                      |++++.|+.|++||. +++++..+.+|...|++++|+||+ +|++++.|+.|++||. +++++..+.+|.          
T Consensus       482 las~~~d~~i~iw~~-~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~-~~~~~~~~~~h~----------  549 (577)
T 2ymu_A          482 IASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHS----------  549 (577)
T ss_dssp             EEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEEECCS----------
T ss_pred             EEEEeCCCEEEEEcC-CCCEEEEEeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEeC-CCCEEEEEcCCC----------
Confidence            999999999999995 688999999999999999999999 9999999999999995 567777777765          


Q ss_pred             CCcEEEEEECCCCCeEEEeccCCeEEee
Q psy12697        574 TGGIFEVCWNSRGDKVGASASDGSVFKN  601 (602)
Q Consensus       574 ~~~i~~l~~spdg~~l~~~~~dg~v~i~  601 (602)
                       +.|++++|+|||++|++++.||+|+++
T Consensus       550 -~~v~~~~fs~dg~~l~s~~~D~~i~~W  576 (577)
T 2ymu_A          550 -SSVWGVAFSPDGQTIASASSDKTVKLW  576 (577)
T ss_dssp             -SCEEEEEECTTSSCEEEEETTSCEEEE
T ss_pred             -CCEEEEEEcCCCCEEEEEeCCCEEEEe
Confidence             789999999999999999999999985

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=4e-56  Score=462.28  Aligned_cols=454  Identities=26%  Similarity=0.435  Sum_probs=381.3

Q ss_pred             eeeeeeeccCCceEEEEECCCCCeEEEeeCCceEEEEecCCceeEEEeecc-CceEEEEeCCCCCCCCCCCCcccccccc
Q psy12697        131 ECLNTLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKGT-GGIFEVCWNSRGTPPNPPESMEVDASIE  209 (602)
Q Consensus       131 ~~~~~l~~h~~~V~~~~~s~d~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (602)
                      +..++|.||++.|++++|||||++||+|+.|++|+|||. +++++..+.++ ..+.+++|+|++..+...........++
T Consensus         7 ~e~~~L~GH~~~V~~~a~spdg~~las~~~d~~v~iWd~-~~~~~~~l~gh~~~V~~l~fspdg~~las~~~d~~i~vWd   85 (577)
T 2ymu_A            7 KERNRLEAHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN   85 (577)
T ss_dssp             CEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred             EEeeEECCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEC-CCCEEEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEE
Confidence            345679999999999999999999999999999999995 78888888874 5689999999998877655444444455


Q ss_pred             ccCCcceEeeCCCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCc----c------------------------
Q psy12697        210 IPQSKATKLIGHESEVFICAWNPVKDFLASGSGDSTARIWDMTDSTKKDPK----E------------------------  261 (602)
Q Consensus       210 ~~~~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~----~------------------------  261 (602)
                      ........+.+|...|.+++|+|++++|++++.|+.+++|+..........    .                        
T Consensus        86 ~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  165 (577)
T 2ymu_A           86 RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKL  165 (577)
T ss_dssp             TTSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEE
T ss_pred             CCCCEEEEEECCCCCEEEEEECCCCCEEEEEcCCCceeecccccceeeeccCCCCceeeeeeecCCccceecccccceec
Confidence            666777889999999999999999999999999999999996533210000    0                        


Q ss_pred             -------ce-------EEEEEEecC-------------------C----CcccCCCCceeEEeeCCCCCeEEEEeCCCeE
Q psy12697        262 -------LQ-------IVLRHCISK-------------------G----GTEVPSNKDVTSLDWNNNGSFLATGSYDGYA  304 (602)
Q Consensus       262 -------~~-------~~~~~~~~~-------------------~----~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i  304 (602)
                             ..       ........+                   .    .....|...|.+++|+|++++|++++.|+.|
T Consensus       166 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~i  245 (577)
T 2ymu_A          166 WNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTV  245 (577)
T ss_dssp             ECTTSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTTSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCE
T ss_pred             cccceeeeeeccCCCcceeeeeecCCCCEEEEEcCCCEEEEEeCCCcEEEEEecCCCCEEEEEECCCCCEEEEEeCCCEE
Confidence                   00       000000000                   0    0112467789999999999999999999999


Q ss_pred             EEEcCCCcceeecccccCCeEEEEEccCCCEEEEEecCCcEEEEeCCCCceeEEeeeccCCeeeeeccCCC-eEEEeeCC
Q psy12697        305 RIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNT-SFASCSTD  383 (602)
Q Consensus       305 ~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  383 (602)
                      ++|+.+++....+..|...|.+++|+|+++.|++++.|+.+++||. +++....+..|...+.+++++|++ .+++++.|
T Consensus       246 ~~w~~~~~~~~~~~~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~-~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d  324 (577)
T 2ymu_A          246 KLWNRNGQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQTIASASDD  324 (577)
T ss_dssp             EEECTTSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEET-TSCEEEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred             EEEeCCCCEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCEEEEEeC-CCcEEEEEecCCCCeEEEEECCCCCEEEEEeCC
Confidence            9999999889999999999999999999999999999999999996 467778888999999999999985 58889999


Q ss_pred             CeEEEEEcCCCceeeEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeeeEeeccccccEEEEEECCCCCCCCC
Q psy12697        384 QHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHDLQAHNKEIYTIKWSPTGPETSN  463 (602)
Q Consensus       384 ~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~  463 (602)
                      +.|++||... +.+..+.+|...+.+++|+|++++|++++.||.|++||. +++.+..+..|...|.+++|+|++..++.
T Consensus       325 ~~i~~w~~~~-~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~dg~~l~~  402 (577)
T 2ymu_A          325 KTVKLWNRNG-QHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIAS  402 (577)
T ss_dssp             SCEEEEETTS-CEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TCCEEEEEECCSSCEEEEEECTTSSCEEE
T ss_pred             CeEEEEeCCC-CeeEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcC-CCCEEEEecCCCCCeEEEEECCCCCEEEE
Confidence            9999999764 456778899999999999999999999999999999995 56888899999999999999999987765


Q ss_pred             CCcce-eee------eeeccCCccCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeeecccCCCeeEeeecCCc-e
Q psy12697        464 PNMSL-IFI------LKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNT-S  535 (602)
Q Consensus       464 ~~~~~-~~~------~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~-~  535 (602)
                      ..... +..      ....+.+|...|.+++|+||+++|++++.|+.|++||. +++.+..+.+|...|.+++|+|++ +
T Consensus       403 ~~~d~~v~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~-~~~~~~~~~~~~~~v~~~~~spd~~~  481 (577)
T 2ymu_A          403 ASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQT  481 (577)
T ss_dssp             EETTSEEEEECTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSCE
T ss_pred             EeCCCEEEEEeCCCCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEEC-CCCEEEEEcCCCCCEEEEEEcCCCCE
Confidence            43322 222      22345679999999999999999999999999999996 578888999999999999999999 9


Q ss_pred             EEEeeCCCcEEEeecCCCCceeeeecccccceEEEEecCCcEEEEEECCCCCeEEEeccCCeEEee
Q psy12697        536 FASCSTDQHIHVCKLHSDKPVKSFEGHTTGQLVHSYKGTGGIFEVCWNSRGDKVGASASDGSVFKN  601 (602)
Q Consensus       536 l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~v~i~  601 (602)
                      |++++.|+.|++||. +++++..+.+|.           ..|++++|+|||++||+++.||.|+|.
T Consensus       482 las~~~d~~i~iw~~-~~~~~~~~~~h~-----------~~v~~l~~s~dg~~l~s~~~dg~v~lw  535 (577)
T 2ymu_A          482 IASASDDKTVKLWNR-NGQLLQTLTGHS-----------SSVRGVAFSPDGQTIASASDDKTVKLW  535 (577)
T ss_dssp             EEEEETTSEEEEEET-TSCEEEEEECCS-----------SCEEEEEECTTSSCEEEEETTSEEEEE
T ss_pred             EEEEeCCCEEEEEcC-CCCEEEEEeCCC-----------CCEEEEEEcCCCCEEEEEECcCEEEEE
Confidence            999999999999995 567777777664           779999999999999999999999874

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=3.7e-55  Score=455.30  Aligned_cols=438  Identities=18%  Similarity=0.267  Sum_probs=342.0

Q ss_pred             CCCCcccCCcceeccceeeeecccc--eeeeeeeccCCceEEEEECCCCCeEEEeeCC----ceEEEEecCCceeEEEee
Q psy12697        106 STGPAITNGEEVHRLTLPLWDVERG--ECLNTLTRHTEPVYSVAFSPDGKFLASGSFD----KCVHIWSARTGQLVHSYK  179 (602)
Q Consensus       106 ~~~~~~~~~~~~~~~~i~vwd~~~~--~~~~~l~~h~~~V~~~~~s~d~~~l~s~~~d----~~v~iwd~~~~~~~~~~~  179 (602)
                      +++.+++++..  +++|+|||+.++  ....++.+|.++|.+++|+|||++|++++.+    +.|++||  +++....+.
T Consensus        69 pdg~~lasg~~--d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd--~~~~~~~l~  144 (611)
T 1nr0_A           69 PSGYYCASGDV--HGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFD--TGTSNGNLT  144 (611)
T ss_dssp             TTSSEEEEEET--TSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETT--TCCBCBCCC
T ss_pred             CCCcEEEEEeC--CCCEEEeECCCCcceeeEeecccCCceEEEEECCCCCEEEEEECCCCceeEEEEee--CCCCcceec
Confidence            35566666544  689999999754  3456889999999999999999999998865    4788887  455555666


Q ss_pred             cc-CceEEEEeCCCCCC-CCCCCCcccccccccc-CCcceEeeCCCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCC
Q psy12697        180 GT-GGIFEVCWNSRGTP-PNPPESMEVDASIEIP-QSKATKLIGHESEVFICAWNPVKDFLASGSGDSTARIWDMTDSTK  256 (602)
Q Consensus       180 ~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~  256 (602)
                      ++ ..+..++|+|++.. +...........+... ......+.+|...|.+++|+|++++|++++.|++|++||+.+++.
T Consensus       145 gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~  224 (611)
T 1nr0_A          145 GQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTK  224 (611)
T ss_dssp             CCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCE
T ss_pred             CCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcE
Confidence            54 56899999999864 3322222222222222 233467889999999999999999999999999999999987653


Q ss_pred             CCCccceEEEEEEecCCCcccCCCCceeEEeeCCCCCeEEEEeCCCeEEEEcCCC-cce---------------------
Q psy12697        257 KDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFLATGSYDGYARIWTSDG-SLK---------------------  314 (602)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~-~~~---------------------  314 (602)
                      .....         ........|...|.+++|+|++++|++++.|+.|++||+.. +..                     
T Consensus       225 ~~~~~---------~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  295 (611)
T 1nr0_A          225 TGVFE---------DDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQ  295 (611)
T ss_dssp             EEECB---------CTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSS
T ss_pred             eeeec---------cccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCC
Confidence            21100         00011125778999999999999999999999999999763 221                     


Q ss_pred             ----------------------eecccccCCeEEEEEccCCCEEEEEecCCcEEEEeCCCCceeEEe-eeccCCeeeeec
Q psy12697        315 ----------------------STLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQF-SFHSAPALDVDW  371 (602)
Q Consensus       315 ----------------------~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~-~~~~~~~~~~~~  371 (602)
                                            ..+.+|...|.+++|+|++++|++++.|++|++||+.+++....+ ..|...+.++.|
T Consensus       296 ~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~  375 (611)
T 1nr0_A          296 ALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKT  375 (611)
T ss_dssp             CEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEE
T ss_pred             EEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEE
Confidence                                  234578999999999999999999999999999999999887665 568889999999


Q ss_pred             cCCCeEEEeeCCCeEEEEEcCCCcee-----------------------------------------eEeccCCCCeEEE
Q psy12697        372 QSNTSFASCSTDQHIHVCKLHSDKPV-----------------------------------------KSFEGHTNEVNAI  410 (602)
Q Consensus       372 ~~~~~~~~~~~~~~i~i~d~~~~~~~-----------------------------------------~~~~~~~~~i~~~  410 (602)
                      ++++.+++++.|+.+++|+.......                                         ..+ .|...+.++
T Consensus       376 s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~-~~~~~v~~v  454 (611)
T 1nr0_A          376 TSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEV-PISYNSSCV  454 (611)
T ss_dssp             CTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEE-ECSSCEEEE
T ss_pred             CCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeee-ecCCCceEE
Confidence            99999999999999999997653211                                         111 145567889


Q ss_pred             EECCCCCEEEEEECCCeEEEEeCCCCeeeEeeccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEcc
Q psy12697        411 KWDPQGLLLASCSDDMTLKIWSLDKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNK  490 (602)
Q Consensus       411 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~  490 (602)
                      +|+|+|++|++|+.|+.|++||+.++......                                . .+|...|.+++|+|
T Consensus       455 a~spdg~~lasgs~D~~v~lwd~~~~~~~~~~--------------------------------~-~~h~~~v~~v~fsp  501 (611)
T 1nr0_A          455 ALSNDKQFVAVGGQDSKVHVYKLSGASVSEVK--------------------------------T-IVHPAEITSVAFSN  501 (611)
T ss_dssp             EECTTSCEEEEEETTSEEEEEEEETTEEEEEE--------------------------------E-EECSSCEEEEEECT
T ss_pred             EEeCCCCEEEEeCCCCeEEEEEccCCceeeee--------------------------------c-cCCCCceEEEEECC
Confidence            99999999999999999999988764321100                                1 23777888999999


Q ss_pred             CCCEEEEEeCCCeEEEEeCCC-Cceeee--ecccCCCeeEeeecCCc-eEEEeeCCCcEEEeecCCCC-ce-eeeecccc
Q psy12697        491 RGNYILSAGVDKTTIIWDAAS-GQCEQQ--FSFHSAPALDVDWQSNT-SFASCSTDQHIHVCKLHSDK-PV-KSFEGHTT  564 (602)
Q Consensus       491 ~~~~l~s~~~dg~i~iwd~~~-~~~~~~--~~~~~~~v~~~~~s~~~-~l~~~~~d~~i~iw~~~~~~-~~-~~~~~~~~  564 (602)
                      ||++|++++.|++|++||+.+ ++++..  +..|...|.+++|+||+ +|++++.|++|++|++.++. .+ ..+.+|. 
T Consensus       502 dg~~las~s~d~~v~~w~~~~~~~~~~~~~~~~H~~~V~~v~fspdg~~lasgs~D~~v~lW~~~~~~~~~~~~~~~h~-  580 (611)
T 1nr0_A          502 NGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHA-  580 (611)
T ss_dssp             TSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSST-
T ss_pred             CCCEEEEEcCCCCEEEEEcCCCCceeeeeeeeecccceeEEEECCCCCEEEEEECCCcEEEEECCCcccccchhhccCc-
Confidence            999999999999999999988 665544  34599999999999999 99999999999999998765 22 3444441 


Q ss_pred             cceEEEEecCCcEEEEEECCCCCeEEEeccCCeEEee
Q psy12697        565 GQLVHSYKGTGGIFEVCWNSRGDKVGASASDGSVFKN  601 (602)
Q Consensus       565 ~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~v~i~  601 (602)
                               ...|.+++|+||++ |++++.||+|+++
T Consensus       581 ---------~~~v~~v~fs~d~~-l~s~~~D~~i~lW  607 (611)
T 1nr0_A          581 ---------MSSVNSVIWLNETT-IVSAGQDSNIKFW  607 (611)
T ss_dssp             ---------TSCEEEEEEEETTE-EEEEETTSCEEEE
T ss_pred             ---------ccCeeEEEEcCCCE-EEEecCCCCEEEE
Confidence                     26799999999998 9999999999985

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=1.1e-53  Score=447.89  Aligned_cols=444  Identities=19%  Similarity=0.299  Sum_probs=361.4

Q ss_pred             ccceeeeecccc----eeeeeeeccCCc-eEEEEECC--CCCeEEEeeCCceEEEEecCCc--------eeEEEeec-cC
Q psy12697        119 RLTLPLWDVERG----ECLNTLTRHTEP-VYSVAFSP--DGKFLASGSFDKCVHIWSARTG--------QLVHSYKG-TG  182 (602)
Q Consensus       119 ~~~i~vwd~~~~----~~~~~l~~h~~~-V~~~~~s~--d~~~l~s~~~d~~v~iwd~~~~--------~~~~~~~~-~~  182 (602)
                      ++.|+|||+.++    +.+..+.+|... |++++|+|  ++++||+++.||.|+|||+.++        +.+..+.. ..
T Consensus        38 ~~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~  117 (615)
T 1pgu_A           38 GKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAG  117 (615)
T ss_dssp             TTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSS
T ss_pred             CCeEEEEECCCCCCccccceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcccc
Confidence            468999999999    999999999999 99999999  9999999999999999999865        66666664 56


Q ss_pred             ceEEEEeCCCCCCCCCCCCcc----ccccccccCCcceEeeCCCcceEEEEEcCCCC-EEEEeeCCCcEEEEeCCCCCCC
Q psy12697        183 GIFEVCWNSRGTPPNPPESME----VDASIEIPQSKATKLIGHESEVFICAWNPVKD-FLASGSGDSTARIWDMTDSTKK  257 (602)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~-~l~s~~~dg~i~iw~~~~~~~~  257 (602)
                      ++..++|+|++..+.......    ....++ .......+.+|...|.+++|+|+++ .+++++.|+.|++||+.+.+..
T Consensus       118 ~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d-~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~  196 (615)
T 1pgu_A          118 PISDISWDFEGRRLCVVGEGRDNFGVFISWD-SGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFS  196 (615)
T ss_dssp             CEEEEEECTTSSEEEEEECCSSCSEEEEETT-TCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEE
T ss_pred             cEEEEEEeCCCCEEEEeccCCCCccEEEEEE-CCCcceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCccee
Confidence            799999999998766544331    111122 4445677889999999999999997 8999999999999998765321


Q ss_pred             CCccceEEEEEEecCCCcccCCCC---ceeEEeeCCC-CCeEEEEeCCCeEEEEcCC-Ccceeec-c---cccCCeEEEE
Q psy12697        258 DPKELQIVLRHCISKGGTEVPSNK---DVTSLDWNNN-GSFLATGSYDGYARIWTSD-GSLKSTL-G---QHKGPIFALK  328 (602)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~---~i~~~~~~~~-~~~l~~~~~dg~i~i~~~~-~~~~~~~-~---~~~~~i~~~~  328 (602)
                      .                ....|..   .|.+++|+|+ +++|++++.||.|++||+. ++....+ .   .|...|.+++
T Consensus       197 ~----------------~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~  260 (615)
T 1pgu_A          197 A----------------SDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALS  260 (615)
T ss_dssp             E----------------EECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEE
T ss_pred             e----------------eecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEEE
Confidence            1                0112345   8999999999 9999999999999999976 5666666 5   8999999999


Q ss_pred             EccCCCEEEEEecCCcEEEEeCCCCceeEEeeec----cCCeeeeeccCCCeEEEeeCCCeEEEEEcCCCceeeEeccCC
Q psy12697        329 WNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFH----SAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEGHT  404 (602)
Q Consensus       329 ~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~  404 (602)
                      |+ ++++|++++.|+.|++||+++++....+..+    ...+..+.|..+..+++++.++.|++||+.+++++..+.+|.
T Consensus       261 ~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~  339 (615)
T 1pgu_A          261 WL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYELGHDEVLKTISGHN  339 (615)
T ss_dssp             ES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEETTEEEEEEEECCCS
T ss_pred             Ec-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeCCCCeEEEEECCCCEEEEECCCCcEEEEEeCCC
Confidence            99 9999999999999999999999998888776    356778888878889999999999999999999999998888


Q ss_pred             CCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeeeEeeccccccEEEEEECCC---------------------------
Q psy12697        405 NEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHDLQAHNKEIYTIKWSPT---------------------------  457 (602)
Q Consensus       405 ~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~---------------------------  457 (602)
                      ..|.+++| |+   |++++.||.|++||+.   .+.  ..|...|.+++|.+.                           
T Consensus       340 ~~v~~~~~-~~---l~~~~~dg~i~~w~~~---~~~--~~~~~~v~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~  410 (615)
T 1pgu_A          340 KGITALTV-NP---LISGSYDGRIMEWSSS---SMH--QDHSNLIVSLDNSKAQEYSSISWDDTLKVNGITKHEFGSQPK  410 (615)
T ss_dssp             SCEEEEET-TT---TEEEETTSCEEETTTT---EEE--CCCCSCEEEEECCSTTCCEEEETTTEEEETTEEEEECSSCEE
T ss_pred             CCEEEEEe-cC---cEEECCCCeEEEEEch---hhc--CcccCceEEEEECCCcEEEEEeCCCCEEEEEcccCcccCCce
Confidence            88888888 76   6666666666666654   111  344444444444221                           


Q ss_pred             ---------------------------------------------CCCCCCCC--cceeeee-------e-eccCCccCC
Q psy12697        458 ---------------------------------------------GPETSNPN--MSLIFIL-------K-STLGQHKGP  482 (602)
Q Consensus       458 ---------------------------------------------~~~~~~~~--~~~~~~~-------~-~~~~~~~~~  482 (602)
                                                                   +..++...  ...+..+       . ..+..|...
T Consensus       411 ~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~  490 (615)
T 1pgu_A          411 VASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAK  490 (615)
T ss_dssp             EEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSC
T ss_pred             EEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEEEcCCEEEEeecCCCeEEEEECCCccccccccCCccCc
Confidence                                                         11111111  1111111       0 456679999


Q ss_pred             eEEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeeecc-cCCCeeEeeecC----------Cc-eEEEeeCCCcEEEeec
Q psy12697        483 IFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSF-HSAPALDVDWQS----------NT-SFASCSTDQHIHVCKL  550 (602)
Q Consensus       483 v~~i~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~~v~~~~~s~----------~~-~l~~~~~d~~i~iw~~  550 (602)
                      |.+++|+|++++|++++.||.|++||+.+++++..+.+ |...|++++|+|          ++ +|++++.||.|++||+
T Consensus       491 v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~  570 (615)
T 1pgu_A          491 PSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSV  570 (615)
T ss_dssp             EEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEES
T ss_pred             eEEEEECCCCCEEEEcCCCCeEEEeeCCCCcceeEeecCCCCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEEC
Confidence            99999999999999999999999999999999999988 999999999999          89 9999999999999999


Q ss_pred             CCC-CceeeeecccccceEEEEecCCcEEEEEECCCCCeEEEeccCCeEEee
Q psy12697        551 HSD-KPVKSFEGHTTGQLVHSYKGTGGIFEVCWNSRGDKVGASASDGSVFKN  601 (602)
Q Consensus       551 ~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~v~i~  601 (602)
                      .++ +++..+.+|.           +.|.+++|+||++ |++++.||.|+++
T Consensus       571 ~~~~~~~~~~~~h~-----------~~v~~l~~s~~~~-l~s~~~d~~v~iw  610 (615)
T 1pgu_A          571 KRPMKIIKALNAHK-----------DGVNNLLWETPST-LVSSGADACIKRW  610 (615)
T ss_dssp             SCTTCCEEETTSST-----------TCEEEEEEEETTE-EEEEETTSCEEEE
T ss_pred             CCCceechhhhcCc-----------cceEEEEEcCCCC-eEEecCCceEEEE
Confidence            987 6777777765           7799999999999 9999999999875

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=3.1e-52  Score=411.53  Aligned_cols=288  Identities=27%  Similarity=0.453  Sum_probs=259.1

Q ss_pred             eeeeeeccCCceEEEEECCCCCeEEEeeCCceEEEEecCCceeEEEeeccCceEEEEeCCCCCCCCCCCCcccccccccc
Q psy12697        132 CLNTLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKGTGGIFEVCWNSRGTPPNPPESMEVDASIEIP  211 (602)
Q Consensus       132 ~~~~l~~h~~~V~~~~~s~d~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (602)
                      ....+.+|.++|++++|+|++++|++|+.|++|+|||+.+++..                                    
T Consensus       100 ~~~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~------------------------------------  143 (410)
T 1vyh_C          100 EKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFE------------------------------------  143 (410)
T ss_dssp             CSCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCC------------------------------------
T ss_pred             ceEeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEE------------------------------------
Confidence            35678899999999999999999999999999999999988765                                    


Q ss_pred             CCcceEeeCCCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEeeCCC
Q psy12697        212 QSKATKLIGHESEVFICAWNPVKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNN  291 (602)
Q Consensus       212 ~~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  291 (602)
                          ..+.+|...|.+++|+|++++|++|+.|++|++||+.+..                                    
T Consensus       144 ----~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~------------------------------------  183 (410)
T 1vyh_C          144 ----RTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFE------------------------------------  183 (410)
T ss_dssp             ----EEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSC------------------------------------
T ss_pred             ----EEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc------------------------------------
Confidence                4456799999999999999999999999999999985431                                    


Q ss_pred             CCeEEEEeCCCeEEEEcCCCcceeecccccCCeEEEEEccCCCEEEEEecCCcEEEEeCCCCceeEEeeeccCCeeeeec
Q psy12697        292 GSFLATGSYDGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDW  371 (602)
Q Consensus       292 ~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~  371 (602)
                                           ....+.+|...|.+++|+|++++|++++.|++|++||++++.++..+..|...+.++.+
T Consensus       184 ---------------------~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~  242 (410)
T 1vyh_C          184 ---------------------CIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRP  242 (410)
T ss_dssp             ---------------------EEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEE
T ss_pred             ---------------------eeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEE
Confidence                                 12234568889999999999999999999999999999999999999999999999999


Q ss_pred             cCCC-eEEEeeCCCeEEEEEcCCCceeeEeccCCCCeEEEEECCC--------------------CCEEEEEECCCeEEE
Q psy12697        372 QSNT-SFASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQ--------------------GLLLASCSDDMTLKI  430 (602)
Q Consensus       372 ~~~~-~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~--------------------~~~l~~~~~dg~i~i  430 (602)
                      ++++ .+++++.|+.|++||+.+++....+.+|...|.+++|+|+                    +.+|++|+.|+.|++
T Consensus       243 ~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~i  322 (410)
T 1vyh_C          243 NQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKM  322 (410)
T ss_dssp             CTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEE
T ss_pred             CCCCCEEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEE
Confidence            9875 5889999999999999999999999999999999999996                    678999999999999


Q ss_pred             EeCCCCeeeEeeccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCCCeEEEEeCC
Q psy12697        431 WSLDKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAA  510 (602)
Q Consensus       431 wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~~  510 (602)
                      ||++++.++..+.+|                                  ...|.+++|+|+|++|++|+.||.|++||+.
T Consensus       323 wd~~~~~~~~~~~~h----------------------------------~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~  368 (410)
T 1vyh_C          323 WDVSTGMCLMTLVGH----------------------------------DNWVRGVLFHSGGKFILSCADDKTLRVWDYK  368 (410)
T ss_dssp             EETTTTEEEEEEECC----------------------------------SSCEEEEEECSSSSCEEEEETTTEEEEECCT
T ss_pred             EECCCCceEEEEECC----------------------------------CCcEEEEEEcCCCCEEEEEeCCCeEEEEECC
Confidence            999999888776654                                  4556666777788999999999999999999


Q ss_pred             CCceeeeecccCCCeeEeeecCCc-eEEEeeCCCcEEEeec
Q psy12697        511 SGQCEQQFSFHSAPALDVDWQSNT-SFASCSTDQHIHVCKL  550 (602)
Q Consensus       511 ~~~~~~~~~~~~~~v~~~~~s~~~-~l~~~~~d~~i~iw~~  550 (602)
                      +++++..+.+|...|++++|+|++ .|++|+.|+.|++|++
T Consensus       369 ~~~~~~~~~~h~~~v~~l~~~~~~~~l~sgs~D~~i~vW~~  409 (410)
T 1vyh_C          369 NKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC  409 (410)
T ss_dssp             TSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC-
T ss_pred             CCceEEEEcCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEeC
Confidence            999999999999999999999999 9999999999999985

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=1.8e-52  Score=473.10  Aligned_cols=479  Identities=19%  Similarity=0.265  Sum_probs=383.7

Q ss_pred             eccceeeeecccceeeeeeeccCCceEEEEECCCCCeEEEeeCCceEEEEecCCceeEEEeecc-CceEEEEeCCCCCCC
Q psy12697        118 HRLTLPLWDVERGECLNTLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKGT-GGIFEVCWNSRGTPP  196 (602)
Q Consensus       118 ~~~~i~vwd~~~~~~~~~l~~h~~~V~~~~~s~d~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~  196 (602)
                      .+++|+|||+.+++.+.++.+|.+.|.+++|+|++++||+++.|++|+|||+.+++.+..+..+ ..+..++|++++...
T Consensus       635 ~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  714 (1249)
T 3sfz_A          635 ADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHL  714 (1249)
T ss_dssp             TTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSCC
T ss_pred             CCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEecCCCce
Confidence            5689999999999999999999999999999999999999999999999999999999998765 568899999965433


Q ss_pred             C--CCCCccccccccc-cCCcceEeeCCCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCccceE---------
Q psy12697        197 N--PPESMEVDASIEI-PQSKATKLIGHESEVFICAWNPVKDFLASGSGDSTARIWDMTDSTKKDPKELQI---------  264 (602)
Q Consensus       197 ~--~~~~~~~~~~~~~-~~~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~---------  264 (602)
                      .  ..........+++ .......+.+|...|.+++|+|++++|++++.||.|++||+.++..........         
T Consensus       715 ~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~  794 (1249)
T 3sfz_A          715 LLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPP  794 (1249)
T ss_dssp             EEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC-------
T ss_pred             EEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCcc
Confidence            2  2222222223333 334456778999999999999999999999999999999997653211100000         


Q ss_pred             ------EEEEEecCC------------------------CcccCCCCceeEEeeCCCCCeEEEEeCCCeEEEEcCC-Ccc
Q psy12697        265 ------VLRHCISKG------------------------GTEVPSNKDVTSLDWNNNGSFLATGSYDGYARIWTSD-GSL  313 (602)
Q Consensus       265 ------~~~~~~~~~------------------------~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~-~~~  313 (602)
                            .....+.+.                        .....+...+.+++|+|+++++++++.+|.|++|+.. +..
T Consensus       795 ~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~  874 (1249)
T 3sfz_A          795 EDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLK  874 (1249)
T ss_dssp             -CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEE
T ss_pred             ccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCce
Confidence                  000000000                        0112567889999999999999999999999999987 566


Q ss_pred             eeecccccCCeEEEEEccCCCEEEEEecCCcEEEEeCCCCce-----------------------------eE-------
Q psy12697        314 KSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQC-----------------------------EQ-------  357 (602)
Q Consensus       314 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~-----------------------------~~-------  357 (602)
                      ...+.+|...|.+++|+|++++|++++.||.+++||+.+...                             ..       
T Consensus       875 ~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  954 (1249)
T 3sfz_A          875 VADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTG  954 (1249)
T ss_dssp             EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSC
T ss_pred             eeecCCCccceEEEEECCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcc
Confidence            777889999999999999999999999999999999653210                             00       


Q ss_pred             -EeeeccCCeeeeeccCCC-eEEEeeCCCeEEEEEcCCCceeeEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEeCCC
Q psy12697        358 -QFSFHSAPALDVDWQSNT-SFASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDK  435 (602)
Q Consensus       358 -~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~  435 (602)
                       ........+.+++++|++ .+++++.+|.|++||+.+++....+.+|...|++++|+|++++|++++.||.|++||+.+
T Consensus       955 ~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~ 1034 (1249)
T 3sfz_A          955 QIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQT 1034 (1249)
T ss_dssp             CEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECSSSSCEEEECSSSBEEEEETTT
T ss_pred             eEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCC
Confidence             011234568888999885 588899999999999999999999999999999999999999999999999999999999


Q ss_pred             CeeeEeeccccccEEEEEECCCCCCCCCCCcceeeeee-------eccCCccCCeEEEEEccCCCEEEEEeCCCeEEEEe
Q psy12697        436 DNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILK-------STLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWD  508 (602)
Q Consensus       436 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd  508 (602)
                      ++.. .+..|...+.++.|+|++..+.......+..+.       ..+.+|...|.+++|+|++++|++++.||.|++||
T Consensus      1035 ~~~~-~~~~~~~~v~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~s~d~~v~iwd 1113 (1249)
T 3sfz_A         1035 GDYV-FLQAHQETVKDFRLLQDSRLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWS 1113 (1249)
T ss_dssp             TEEE-CCBCCSSCEEEEEECSSSEEEEEESSSEEEEEETTTTCCCEEEECCSSCCCCEEECSSSSSCEEECCSSCCCEEC
T ss_pred             CceE-EEecCCCcEEEEEEcCCCcEEEEECCCcEEEEECCCCceeEEEcccCCcEEEEEECCCCCEEEEEcCCCcEEEEE
Confidence            8776 456889999999999987655444444443332       34567999999999999999999999999999999


Q ss_pred             CCCCceeeeecccCCCeeEeeecCCc-eEEEeeCCCcEEEeecCCCCceeeeecccccceEEEEecCCcEEEEEECCCCC
Q psy12697        509 AASGQCEQQFSFHSAPALDVDWQSNT-SFASCSTDQHIHVCKLHSDKPVKSFEGHTTGQLVHSYKGTGGIFEVCWNSRGD  587 (602)
Q Consensus       509 ~~~~~~~~~~~~~~~~v~~~~~s~~~-~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~  587 (602)
                      +.+++++..+.+|...|++++|+|++ +|++++.||.|++||+.+++.+..+.......  ....+.+.|++++|+|||+
T Consensus      1114 ~~~~~~~~~l~~h~~~v~~~~~s~dg~~lat~~~dg~i~vwd~~~~~~~~~~~~~~~~~--~~~~~~~~v~~l~fs~dg~ 1191 (1249)
T 3sfz_A         1114 FDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEE--GTATHGGWVTDVCFSPDSK 1191 (1249)
T ss_dssp             SSSSSCSBCCCCCSSCEEEEEECSSSSEEEEEETTSCCCEEESSSSCCCCCCCCCC---------CCSCCCEEEECTTSS
T ss_pred             CCCcceeeeeccCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEeccccccc--cccccCceEEEEEECCCCC
Confidence            99999999999999999999999999 99999999999999999998776652211000  0111247799999999999


Q ss_pred             eEEEeccCCeEEee
Q psy12697        588 KVGASASDGSVFKN  601 (602)
Q Consensus       588 ~l~~~~~dg~v~i~  601 (602)
                      +|++++  |.|++.
T Consensus      1192 ~l~s~~--g~v~vw 1203 (1249)
T 3sfz_A         1192 TLVSAG--GYLKWW 1203 (1249)
T ss_dssp             CEEEES--SSEEEB
T ss_pred             EEEECC--CeEEEE
Confidence            999886  777764

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=1e-50  Score=458.73  Aligned_cols=453  Identities=18%  Similarity=0.242  Sum_probs=377.9

Q ss_pred             eeccceeeeecccceeeeeeeccCCceEEEEECCCCCeEEEeeCCceEEEEecCCceeEEEeeccC--------------
Q psy12697        117 VHRLTLPLWDVERGECLNTLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKGTG--------------  182 (602)
Q Consensus       117 ~~~~~i~vwd~~~~~~~~~l~~h~~~V~~~~~s~d~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~--------------  182 (602)
                      ..+++|++||+.+++++.++.+|.+.|++++|+|++++|++++.||+|++||+.+++....+....              
T Consensus       720 ~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  799 (1249)
T 3sfz_A          720 SNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEV  799 (1249)
T ss_dssp             ETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCC
T ss_pred             eCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccc
Confidence            346889999999999999999999999999999999999999999999999999998887765422              


Q ss_pred             ceEEEEeCCCCCCCCCCCCcccccccccc-CCcce-EeeCCCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCc
Q psy12697        183 GIFEVCWNSRGTPPNPPESMEVDASIEIP-QSKAT-KLIGHESEVFICAWNPVKDFLASGSGDSTARIWDMTDSTKKDPK  260 (602)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~l~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~  260 (602)
                      .+..++|+++|..+........ ..+... ..... ...+|...|.+++|+|+++++++++.||.|++|++.++...   
T Consensus       800 ~v~~~~~s~dg~~l~~~~~~~v-~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~---  875 (1249)
T 3sfz_A          800 IVKCCSWSADGDKIIVAAKNKV-LLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKV---  875 (1249)
T ss_dssp             CBCCCCBCTTSSEEEEEETTEE-EEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEE---
T ss_pred             eEEEEEECCCCCEEEEEcCCcE-EEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCcee---
Confidence            4667888888877665443221 122222 22222 23489999999999999999999999999999999865321   


Q ss_pred             cceEEEEEEecCCCcccCCCCceeEEeeCCCCCeEEEEeCCCeEEEEcCCCcc---------------------------
Q psy12697        261 ELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFLATGSYDGYARIWTSDGSL---------------------------  313 (602)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~---------------------------  313 (602)
                        .           ....|...|.+++|+|+++++++++.||.|++|+.....                           
T Consensus       876 --~-----------~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  942 (1249)
T 3sfz_A          876 --A-----------DCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDN  942 (1249)
T ss_dssp             --E-----------EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEES
T ss_pred             --e-----------ecCCCccceEEEEECCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecC
Confidence              0           112457889999999999999999999999999853100                           


Q ss_pred             ---e--------eecccccCCeEEEEEccCCCEEEEEecCCcEEEEeCCCCceeEEeeeccCCeeeeeccCCC-eEEEee
Q psy12697        314 ---K--------STLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNT-SFASCS  381 (602)
Q Consensus       314 ---~--------~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~  381 (602)
                         .        .....+...+.+++|+|+++++++++.+|.|.+||+.+++....+..|...+.+++|+|++ .+++++
T Consensus       943 ~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~ 1022 (1249)
T 3sfz_A          943 IRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSS 1022 (1249)
T ss_dssp             SSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECSSSSCEEEEC
T ss_pred             CcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCceEEEEECCCCCEEEEEc
Confidence               0        0011234679999999999999999999999999999999999999999999999999985 588999


Q ss_pred             CCCeEEEEEcCCCceeeEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeeeEeeccccccEEEEEECCCCCCC
Q psy12697        382 TDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHDLQAHNKEIYTIKWSPTGPET  461 (602)
Q Consensus       382 ~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  461 (602)
                      .||.|++||+.+++... +..|...|.+++|+|++ .+++++.||.|++||+.+++....+..|...+.+++|+|++..+
T Consensus      1023 ~dg~i~vwd~~~~~~~~-~~~~~~~v~~~~~~~~~-~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l 1100 (1249)
T 3sfz_A         1023 EDSVIQVWNWQTGDYVF-LQAHQETVKDFRLLQDS-RLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKF 1100 (1249)
T ss_dssp             SSSBEEEEETTTTEEEC-CBCCSSCEEEEEECSSS-EEEEEESSSEEEEEETTTTCCCEEEECCSSCCCCEEECSSSSSC
T ss_pred             CCCEEEEEECCCCceEE-EecCCCcEEEEEEcCCC-cEEEEECCCcEEEEECCCCceeEEEcccCCcEEEEEECCCCCEE
Confidence            99999999999987664 55799999999999976 57889999999999999999999999999999999999999876


Q ss_pred             CCCCccee-ee-------eeeccCCccCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeee---------cccCCC
Q psy12697        462 SNPNMSLI-FI-------LKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQF---------SFHSAP  524 (602)
Q Consensus       462 ~~~~~~~~-~~-------~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~---------~~~~~~  524 (602)
                      +....... ..       ....+.+|...|++++|+|+|++|++++.||.|++||+.+++.+..+         ..|.+.
T Consensus      1101 ~s~s~d~~v~iwd~~~~~~~~~l~~h~~~v~~~~~s~dg~~lat~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 1180 (1249)
T 3sfz_A         1101 SSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGW 1180 (1249)
T ss_dssp             EEECCSSCCCEECSSSSSCSBCCCCCSSCEEEEEECSSSSEEEEEETTSCCCEEESSSSCCCCCCCCCC-------CCSC
T ss_pred             EEEcCCCcEEEEECCCcceeeeeccCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEeccccccccccccCce
Confidence            65443322 11       12356689999999999999999999999999999999999887765         578999


Q ss_pred             eeEeeecCCc-eEEEeeCCCcEEEeecCCCCceeeeecccccceEEEEecCCcEEEEEECCCCCeEEEeccCCeEEee
Q psy12697        525 ALDVDWQSNT-SFASCSTDQHIHVCKLHSDKPVKSFEGHTTGQLVHSYKGTGGIFEVCWNSRGDKVGASASDGSVFKN  601 (602)
Q Consensus       525 v~~~~~s~~~-~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~v~i~  601 (602)
                      |++++|+||+ ++++++  |.|++||+.+++.+..+..+.           ..|.+++|+|||++|++++.||.+++.
T Consensus      1181 v~~l~fs~dg~~l~s~~--g~v~vwd~~~g~~~~~~~~~~-----------~~i~~~~~s~dg~~l~~~~~dg~v~vw 1245 (1249)
T 3sfz_A         1181 VTDVCFSPDSKTLVSAG--GYLKWWNVATGDSSQTFYTNG-----------TNLKKIHVSPDFRTYVTVDNLGILYIL 1245 (1249)
T ss_dssp             CCEEEECTTSSCEEEES--SSEEEBCSSSCBCCCCCCCSS-----------CCCCCCEECSSSCCEEEECTTCCEEEE
T ss_pred             EEEEEECCCCCEEEECC--CeEEEEECCCCceeeeeeccC-----------CcccEEEECCCCCEEEEecCCcEEEEE
Confidence            9999999999 888775  899999999998887776654           678999999999999999999999874

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3e-48  Score=417.14  Aligned_cols=450  Identities=11%  Similarity=0.062  Sum_probs=329.6

Q ss_pred             eeccCCceEEEEECCCCCeEEEeeCCceEEEEecCCceeEEEeeccCceEEEEeCCCCCCCCCCCCccccccccccCCc-
Q psy12697        136 LTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKGTGGIFEVCWNSRGTPPNPPESMEVDASIEIPQSK-  214 (602)
Q Consensus       136 l~~h~~~V~~~~~s~d~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  214 (602)
                      ..+|.+.|++++|+|++++||+|+.||+|+||+..+++....+.....+..++|++ +..+...........+++.... 
T Consensus        13 ~~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~~~~~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~~~   91 (902)
T 2oaj_A           13 KYGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVIKLEDRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYSQKV   91 (902)
T ss_dssp             EEECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEEECSSCCCEEEEEEET-TTEEEEEETTCEEEEEETTTCSE
T ss_pred             ccCCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEEEcCCCCCEEEEEEcC-CCEEEEEECcCeEEEEECCCCcE
Confidence            35899999999999999999999999999999999998888777778899999999 6644444433333344443333 


Q ss_pred             ceEeeCCCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCccceEEEEEEecCC-CcccCCCCceeEEeeCCC-C
Q psy12697        215 ATKLIGHESEVFICAWNPVKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKG-GTEVPSNKDVTSLDWNNN-G  292 (602)
Q Consensus       215 ~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~-~  292 (602)
                      ...+ .|...|++++|+|++++|++|+.||.|++||+.++...      .......... .....|...|.+++|+|+ +
T Consensus        92 ~~~~-~~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~------~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~  164 (902)
T 2oaj_A           92 LTTV-FVPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLS------SFKLDNLQKSSFFPAARLSPIVSIQWNPRDI  164 (902)
T ss_dssp             EEEE-ECSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEE------EEEECCHHHHHTCSSSCCCCCCEEEEETTEE
T ss_pred             EEEE-cCCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccc------cceeccccccccccccCCCCeEEEEEccCCC
Confidence            3334 47789999999999999999999999999999876421      0000000000 112346789999999996 5


Q ss_pred             CeEEEEeCCCeEEEEcCCC-cceeecccc------------------cCCeEEEEEccCCCEEEEEecCCcEEEEeCCCC
Q psy12697        293 SFLATGSYDGYARIWTSDG-SLKSTLGQH------------------KGPIFALKWNKRGNYILSAGVDKTTIIWDAASG  353 (602)
Q Consensus       293 ~~l~~~~~dg~i~i~~~~~-~~~~~~~~~------------------~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~~  353 (602)
                      ..+++|+.||.| +||++. .....+..|                  ...|.+++|+|+|++|++++.||.|++||++++
T Consensus       165 ~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g  243 (902)
T 2oaj_A          165 GTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSG  243 (902)
T ss_dssp             EEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTC
T ss_pred             CEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCC
Confidence            789999999999 999874 344444433                  578999999999999999999999999999999


Q ss_pred             ceeEEee-----e-------------ccCCeeeeecc----CC--CeEEEeeCC-----CeEEEEEcC------------
Q psy12697        354 QCEQQFS-----F-------------HSAPALDVDWQ----SN--TSFASCSTD-----QHIHVCKLH------------  392 (602)
Q Consensus       354 ~~~~~~~-----~-------------~~~~~~~~~~~----~~--~~~~~~~~~-----~~i~i~d~~------------  392 (602)
                      +++....     .             +...+.+++|+    |+  ..+++++.+     ..+.+|++.            
T Consensus       244 ~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~  323 (902)
T 2oaj_A          244 HMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEG  323 (902)
T ss_dssp             CEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHH
T ss_pred             cEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccchhh
Confidence            8765311     1             23468899995    43  346666555     378888852            


Q ss_pred             ------CCceeeEec-cCCCCeEEEEECC----------CCCEEEEEECCCeEEEEeCCCCeeeEe-------ecccccc
Q psy12697        393 ------SDKPVKSFE-GHTNEVNAIKWDP----------QGLLLASCSDDMTLKIWSLDKDNCVHD-------LQAHNKE  448 (602)
Q Consensus       393 ------~~~~~~~~~-~~~~~i~~~~~~~----------~~~~l~~~~~dg~i~iwd~~~~~~~~~-------~~~~~~~  448 (602)
                            +.+....+. .+...|..+.+.+          +...+++++.||.|++||+.++.....       +..|...
T Consensus       324 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~  403 (902)
T 2oaj_A          324 MKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPL  403 (902)
T ss_dssp             HHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTB
T ss_pred             hhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCcccccCCC
Confidence                  222233333 4667888888866          344789999999999999987754322       3445566


Q ss_pred             EEEEEEC----------------------------------CCCCCCCCCCcce-eeeeee---cc--------------
Q psy12697        449 IYTIKWS----------------------------------PTGPETSNPNMSL-IFILKS---TL--------------  476 (602)
Q Consensus       449 i~~~~~~----------------------------------~~~~~~~~~~~~~-~~~~~~---~~--------------  476 (602)
                      +++++++                                  |++..++.+.... +..+..   .+              
T Consensus       404 v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~  483 (902)
T 2oaj_A          404 ATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTL  483 (902)
T ss_dssp             EEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHT
T ss_pred             eeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEecCCCcEEEEECCCccccCCceEEeechhhc
Confidence            7666663                                  3333222211111 111110   01              


Q ss_pred             -CCccCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCc------------------------------------------
Q psy12697        477 -GQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQ------------------------------------------  513 (602)
Q Consensus       477 -~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~~~~~------------------------------------------  513 (602)
                       .+|...|.+++|+|||++||+|+.||+|+|||+.+++                                          
T Consensus       484 ~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  563 (902)
T 2oaj_A          484 NKAKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQ  563 (902)
T ss_dssp             TCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSE
T ss_pred             CCCCCCceeEEEecCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCC
Confidence             1688899999999999999999999999999998762                                          


Q ss_pred             ---eeeeecccCCCeeEeeecCCceEEEeeCCCcEEEeecCCCCceeeeecccccceEEEE--ecCCcEEEEEEC-----
Q psy12697        514 ---CEQQFSFHSAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEGHTTGQLVHSY--KGTGGIFEVCWN-----  583 (602)
Q Consensus       514 ---~~~~~~~~~~~v~~~~~s~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~l~~s-----  583 (602)
                         ++..+.+|.+.|++++|||||+||+|+.|++|++||++++..+......       .+  .+.+.|++|+|+     
T Consensus       564 g~~~~~~l~~h~~~V~svafSpdG~lAsgs~D~tv~lwd~~~~~~~~~~~~~-------~~~~gh~~~V~sv~Fs~~~~~  636 (902)
T 2oaj_A          564 GFMPSTAVHANKGKTSAINNSNIGFVGIAYAAGSLMLIDRRGPAIIYMENIR-------EISGAQSACVTCIEFVIMEYG  636 (902)
T ss_dssp             EEEEEEEECCCSCSEEEEEECBTSEEEEEETTSEEEEEETTTTEEEEEEEGG-------GTCSSCCCCEEEEEEEEEECT
T ss_pred             ccceeEEEEcCCCcEEEEEecCCcEEEEEeCCCcEEEEECCCCeEEEEeehh-------HhccccccceEEEEEEEEecC
Confidence               3677888999999999999999999999999999998776654321100       01  123679999999     


Q ss_pred             CCC---CeEEEeccCCeEEee
Q psy12697        584 SRG---DKVGASASDGSVFKN  601 (602)
Q Consensus       584 pdg---~~l~~~~~dg~v~i~  601 (602)
                      |||   ++|++++.||+|+++
T Consensus       637 ~Dg~~~~~l~sgs~D~tv~~w  657 (902)
T 2oaj_A          637 DDGYSSILMVCGTDMGEVITY  657 (902)
T ss_dssp             TSSSEEEEEEEEETTSEEEEE
T ss_pred             CCCCcceEEEEEecCCcEEEE
Confidence            886   899999999999975

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=5.5e-47  Score=397.03  Aligned_cols=428  Identities=15%  Similarity=0.164  Sum_probs=353.5

Q ss_pred             ccCCceEEEEECCCCCeEEEeeCCceEEEEecCCc----eeEEEeecc-Cc-eEEEEeCC--CCCCCCCCCCcccccccc
Q psy12697        138 RHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTG----QLVHSYKGT-GG-IFEVCWNS--RGTPPNPPESMEVDASIE  209 (602)
Q Consensus       138 ~h~~~V~~~~~s~d~~~l~s~~~d~~v~iwd~~~~----~~~~~~~~~-~~-~~~~~~~~--~~~~~~~~~~~~~~~~~~  209 (602)
                      .|.+.|.+++|+|||++||+++ ++.|+|||+.++    +....+..+ .. +..++|+|  ++..+...........+.
T Consensus        16 ~~~~~v~~~~~spdg~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~   94 (615)
T 1pgu_A           16 TQRNFTTHLSYDPTTNAIAYPC-GKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWG   94 (615)
T ss_dssp             CCTTCCCCCEEETTTTEEEEEE-TTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEE
T ss_pred             CccCceeEEEECCCCCEEEEec-CCeEEEEECCCCCCccccceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEe
Confidence            5889999999999999999998 889999999999    888888764 45 89999999  988776655544444444


Q ss_pred             cc---------CCcceEeeCCCcceEEEEEcCCCCEEEEeeCC----CcEEEEeCCCCCCCCCccceEEEEEEecCCCcc
Q psy12697        210 IP---------QSKATKLIGHESEVFICAWNPVKDFLASGSGD----STARIWDMTDSTKKDPKELQIVLRHCISKGGTE  276 (602)
Q Consensus       210 ~~---------~~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~d----g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (602)
                      +.         ......+.+|...|.+++|+|++++|++++.+    +.|.+||..  ..     ..           ..
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d~~--~~-----~~-----------~~  156 (615)
T 1pgu_A           95 WTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSG--NS-----LG-----------EV  156 (615)
T ss_dssp             EEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTC--CE-----EE-----------EC
T ss_pred             CCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEECC--Cc-----ce-----------ee
Confidence            42         24456677899999999999999999999988    689999832  11     00           11


Q ss_pred             cCCCCceeEEeeCCCCC-eEEEEeCCCeEEEEcCC-CcceeecccccC---CeEEEEEccC-CCEEEEEecCCcEEEEeC
Q psy12697        277 VPSNKDVTSLDWNNNGS-FLATGSYDGYARIWTSD-GSLKSTLGQHKG---PIFALKWNKR-GNYILSAGVDKTTIIWDA  350 (602)
Q Consensus       277 ~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~i~~~~-~~~~~~~~~~~~---~i~~~~~~~~-~~~l~~~~~dg~i~~wd~  350 (602)
                      ..|...|.+++|+|+++ .+++++.||.|++||.. ++....+..|..   .|.+++|+|+ +++|++++.||.|++||+
T Consensus       157 ~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~  236 (615)
T 1pgu_A          157 SGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDG  236 (615)
T ss_dssp             CSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEET
T ss_pred             ecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEEC
Confidence            24578899999999998 79999999999999976 566677888998   9999999999 999999999999999999


Q ss_pred             CCCceeEEe-e---eccCCeeeeeccCCCeEEEeeCCCeEEEEEcCCCceeeEeccC----CCCeEEEEECCCCCEEEEE
Q psy12697        351 ASGQCEQQF-S---FHSAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEGH----TNEVNAIKWDPQGLLLASC  422 (602)
Q Consensus       351 ~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~----~~~i~~~~~~~~~~~l~~~  422 (602)
                      .+++.+..+ .   .|...+.++.|+.+..+++++.|+.|++||+.+++.+..+..+    ...+.++.|+ ++++++++
T Consensus       237 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~  315 (615)
T 1pgu_A          237 KSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVAT-GNGRIISL  315 (615)
T ss_dssp             TTCCEEEECCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEE-ETTEEEEE
T ss_pred             CCCCEeEEecccccccCCceEEEEEcCCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeC-CCCeEEEE
Confidence            999999988 6   8899999999994467899999999999999999998888876    3678888886 89999999


Q ss_pred             ECCCeEEEEeCCCCeeeEeeccccccEEEEEECCCCCCCCCCCcceee--------------------------------
Q psy12697        423 SDDMTLKIWSLDKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIF--------------------------------  470 (602)
Q Consensus       423 ~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~--------------------------------  470 (602)
                      +.||.|++||+.+++.+..+..|...+.+++| |+  .........+.                                
T Consensus       316 ~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~-~~--l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d  392 (615)
T 1pgu_A          316 SLDGTLNFYELGHDEVLKTISGHNKGITALTV-NP--LISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYSSISWD  392 (615)
T ss_dssp             ETTSCEEEEETTEEEEEEEECCCSSCEEEEET-TT--TEEEETTSCEEETTTTEEECCCCSCEEEEECCSTTCCEEEETT
T ss_pred             ECCCCEEEEECCCCcEEEEEeCCCCCEEEEEe-cC--cEEECCCCeEEEEEchhhcCcccCceEEEEECCCcEEEEEeCC
Confidence            99999999999999999999999999999999 76  11111000000                                


Q ss_pred             ----eeeec----------------------------------------cCCccCCeEEEEEccCCCEEEEEeC-CCeEE
Q psy12697        471 ----ILKST----------------------------------------LGQHKGPIFALKWNKRGNYILSAGV-DKTTI  505 (602)
Q Consensus       471 ----~~~~~----------------------------------------~~~~~~~v~~i~~s~~~~~l~s~~~-dg~i~  505 (602)
                          .+...                                        ...+...+.+++|+  +++|++++. |+.|+
T Consensus       393 ~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~d~~i~  470 (615)
T 1pgu_A          393 DTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLS--QNYVAVGLEEGNTIQ  470 (615)
T ss_dssp             TEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEEC--SSEEEEEETTTSCEE
T ss_pred             CCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEEEc--CCEEEEeecCCCeEE
Confidence                00000                                        00144566677777  778888888 88999


Q ss_pred             EEeCCCCcee-eeecccCCCeeEeeecCCc-eEEEeeCCCcEEEeecCCCCceeeeec-ccccceEEEEecCCcEEEEEE
Q psy12697        506 IWDAASGQCE-QQFSFHSAPALDVDWQSNT-SFASCSTDQHIHVCKLHSDKPVKSFEG-HTTGQLVHSYKGTGGIFEVCW  582 (602)
Q Consensus       506 iwd~~~~~~~-~~~~~~~~~v~~~~~s~~~-~l~~~~~d~~i~iw~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~l~~  582 (602)
                      +||+.+++.. ..+..|...|++++|+|++ +|++++.||.|++||+.+++++..+.+ |.           ..|.+++|
T Consensus       471 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~-----------~~v~~~~~  539 (615)
T 1pgu_A          471 VFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRT-----------SKINAISW  539 (615)
T ss_dssp             EEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCS-----------SCEEEEEE
T ss_pred             EEECCCccccccccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCCCcceeEeecCCC-----------CceeEEEE
Confidence            9998887665 6777899999999999999 999999999999999998888777765 54           77999999


Q ss_pred             CC----------CCCeEEEeccCCeEEee
Q psy12697        583 NS----------RGDKVGASASDGSVFKN  601 (602)
Q Consensus       583 sp----------dg~~l~~~~~dg~v~i~  601 (602)
                      +|          ++++|++++.||.|+|.
T Consensus       540 sp~~~~~~~~~~~~~~l~~~~~dg~i~iw  568 (615)
T 1pgu_A          540 KPAEKGANEEEIEEDLVATGSLDTNIFIY  568 (615)
T ss_dssp             CCCC------CCSCCEEEEEETTSCEEEE
T ss_pred             cCccccccccccCCCEEEEEcCCCcEEEE
Confidence            99          99999999999999874

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.6e-47  Score=411.61  Aligned_cols=471  Identities=11%  Similarity=0.067  Sum_probs=340.9

Q ss_pred             CCcccCCcceeccceeeeecccceeeeeeeccCCceEEEEECCCCCeEEEeeCCceEEEEecCCceeEEEeeccCceEEE
Q psy12697        108 GPAITNGEEVHRLTLPLWDVERGECLNTLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKGTGGIFEV  187 (602)
Q Consensus       108 ~~~~~~~~~~~~~~i~vwd~~~~~~~~~l~~h~~~V~~~~~s~d~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~  187 (602)
                      +.+++.|.  .+++|+|||..+++.+..+. |...|.+++|+| |++|++++.|++|+|||+.+++.+..+.....+..+
T Consensus        29 g~~lAsgs--~Dg~I~lw~~~~~~~~~~~~-~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~~~~~~~~~~~~V~~v  104 (902)
T 2oaj_A           29 QNLLAIAT--VTGEVHIYGQQQVEVVIKLE-DRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYSQKVLTTVFVPGKITSI  104 (902)
T ss_dssp             TTEEEEEE--TTSEEEEECSTTCEEEEECS-SCCCEEEEEEET-TTEEEEEETTCEEEEEETTTCSEEEEEECSSCEEEE
T ss_pred             CCEEEEEe--CCCEEEEEeCCCcEEEEEcC-CCCCEEEEEEcC-CCEEEEEECcCeEEEEECCCCcEEEEEcCCCCEEEE
Confidence            34455543  35799999999888776654 889999999999 889999999999999999999999999888889999


Q ss_pred             EeCCCCCCCCCCCCccccccccccCCcc------------eEeeCCCcceEEEEEcCCC-CEEEEeeCCCcEEEEeCCCC
Q psy12697        188 CWNSRGTPPNPPESMEVDASIEIPQSKA------------TKLIGHESEVFICAWNPVK-DFLASGSGDSTARIWDMTDS  254 (602)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~l~~h~~~v~~~~~~~~~-~~l~s~~~dg~i~iw~~~~~  254 (602)
                      +|+|++..+...........+++.....            ..+.+|...|.+++|+|++ ..|++++.||.| +||+.++
T Consensus       105 ~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~  183 (902)
T 2oaj_A          105 DTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVEN  183 (902)
T ss_dssp             ECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTT
T ss_pred             EECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCC
Confidence            9999998876655444444444433221            2346799999999999964 789999999999 9999876


Q ss_pred             CCCCCccceEEEEEEec--CC-----CcccCCCCceeEEeeCCCCCeEEEEeCCCeEEEEcCC-Ccceee--c---cc--
Q psy12697        255 TKKDPKELQIVLRHCIS--KG-----GTEVPSNKDVTSLDWNNNGSFLATGSYDGYARIWTSD-GSLKST--L---GQ--  319 (602)
Q Consensus       255 ~~~~~~~~~~~~~~~~~--~~-----~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~-~~~~~~--~---~~--  319 (602)
                      +.....     ..+...  ..     .....|...|.+++|+|+|++|++|+.||.|++||.+ ++.+..  +   ..  
T Consensus       184 ~~~~~~-----~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~  258 (902)
T 2oaj_A          184 EIKQSF-----IYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMIMARTVFETEINV  258 (902)
T ss_dssp             EEEEEE-----CCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCCEEEEECSSCSCTTS
T ss_pred             ceEEEE-----ecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEEeecccccCC
Confidence            432110     000000  00     0112234679999999999999999999999999986 444332  2   11  


Q ss_pred             -----------ccCCeEEEEEcc----CC-CEEEEEecC-----------------------------------------
Q psy12697        320 -----------HKGPIFALKWNK----RG-NYILSAGVD-----------------------------------------  342 (602)
Q Consensus       320 -----------~~~~i~~~~~~~----~~-~~l~~~~~d-----------------------------------------  342 (602)
                                 |...|.+++|++    ++ ..|++++.+                                         
T Consensus       259 ~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~  338 (902)
T 2oaj_A          259 PQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFP  338 (902)
T ss_dssp             CCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEEC
T ss_pred             CCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEe
Confidence                       345788999953    32 344555333                                         


Q ss_pred             -----------------------------------CcEEEEeCCCCceeEE-----------------------------
Q psy12697        343 -----------------------------------KTTIIWDAASGQCEQQ-----------------------------  358 (602)
Q Consensus       343 -----------------------------------g~i~~wd~~~~~~~~~-----------------------------  358 (602)
                                                         |.|++||+.++.....                             
T Consensus       339 ~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~  418 (902)
T 2oaj_A          339 LPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWL  418 (902)
T ss_dssp             CSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHH
T ss_pred             cCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCcccccCCCeeEEEEEEcCHHHHH
Confidence                                               3344444433321110                             


Q ss_pred             ------------eeeccCCeeeeeccCC-CeEEEeeCCCeEEEEEcCCCcee----eE--ec-----cCCCCeEEEEECC
Q psy12697        359 ------------FSFHSAPALDVDWQSN-TSFASCSTDQHIHVCKLHSDKPV----KS--FE-----GHTNEVNAIKWDP  414 (602)
Q Consensus       359 ------------~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~i~d~~~~~~~----~~--~~-----~~~~~i~~~~~~~  414 (602)
                                  +.+|...+..++|+|+ ..+++|+.|++|++||+.++...    ..  +.     +|...|.+++|+|
T Consensus       419 ~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafsp  498 (902)
T 2oaj_A          419 GALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAA  498 (902)
T ss_dssp             HHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEET
T ss_pred             HHHhcccCCCCcccCCcCCCCcccccccCcEEEEecCCCcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEEecC
Confidence                        0011112233445565 45899999999999999887431    11  11     7889999999999


Q ss_pred             CCCEEEEEECCCeEEEEeCCCC---------------------------------------------eeeEeeccccccE
Q psy12697        415 QGLLLASCSDDMTLKIWSLDKD---------------------------------------------NCVHDLQAHNKEI  449 (602)
Q Consensus       415 ~~~~l~~~~~dg~i~iwd~~~~---------------------------------------------~~~~~~~~~~~~i  449 (602)
                      ++++||+|+.||+|+|||+.++                                             +++..+..|...|
T Consensus       499 dg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V  578 (902)
T 2oaj_A          499 ETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKT  578 (902)
T ss_dssp             TTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSE
T ss_pred             CCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcE
Confidence            9999999999999999999765                                             2467788899999


Q ss_pred             EEEEECCCCCCCCCCCcce-eeeee------------eccC-CccCCeEEEEEc-----cCC---CEEEEEeCCCeEEEE
Q psy12697        450 YTIKWSPTGPETSNPNMSL-IFILK------------STLG-QHKGPIFALKWN-----KRG---NYILSAGVDKTTIIW  507 (602)
Q Consensus       450 ~~~~~~~~~~~~~~~~~~~-~~~~~------------~~~~-~~~~~v~~i~~s-----~~~---~~l~s~~~dg~i~iw  507 (602)
                      ++++|+|++ .++.+.... +..+.            ..+. +|...|++++|+     |||   ++|++|+.|++|++|
T Consensus       579 ~svafSpdG-~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~w  657 (902)
T 2oaj_A          579 SAINNSNIG-FVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQSACVTCIEFVIMEYGDDGYSSILMVCGTDMGEVITY  657 (902)
T ss_dssp             EEEEECBTS-EEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSCCCCEEEEEEEEEECTTSSSEEEEEEEEETTSEEEEE
T ss_pred             EEEEecCCc-EEEEEeCCCcEEEEECCCCeEEEEeehhHhccccccceEEEEEEEEecCCCCCcceEEEEEecCCcEEEE
Confidence            999999999 776554433 22221            1333 899999999999     885   899999999999999


Q ss_pred             eC---CCCceeeeecccC-----CCeeEee-ec----------------------CCceEEEeeCCCcEEEeecCCCCce
Q psy12697        508 DA---ASGQCEQQFSFHS-----APALDVD-WQ----------------------SNTSFASCSTDQHIHVCKLHSDKPV  556 (602)
Q Consensus       508 d~---~~~~~~~~~~~~~-----~~v~~~~-~s----------------------~~~~l~~~~~d~~i~iw~~~~~~~~  556 (602)
                      |+   .+|++...+.+|.     ++|.+++ |+                      +++.+++++ +..|+||++.++++.
T Consensus       658 d~~p~~~g~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~l~~~-~~~ir~~~~~~~k~~  736 (902)
T 2oaj_A          658 KILPASGGKFDVQLMDITNVTSKGPIHKIDAFSKETKSSCLATIPKMQNLSKGLCIPGIVLITG-FDDIRLITLGKSKST  736 (902)
T ss_dssp             EEEECGGGCEEEEEEEEEECCSSCCCCEEEEEETTTCCBCBCBHHHHHGGGGTCCCCEEEEEEC-SSEEEEECTTCCCEE
T ss_pred             EEecCCCCcEEEEecCceecCCCCceEEEEeEecCCCCcccCCHHHHhccCCCCCCCeEEEEEe-ccceEEEeCccccce
Confidence            99   8899888888774     6777776 55                      566444444 778999999998877


Q ss_pred             eeeecccccceEEEEecCCcEEEE---E------ECCCCCeEEEeccCCeEEee
Q psy12697        557 KSFEGHTTGQLVHSYKGTGGIFEV---C------WNSRGDKVGASASDGSVFKN  601 (602)
Q Consensus       557 ~~~~~~~~~~~~~~~~~~~~i~~l---~------~spdg~~l~~~~~dg~v~i~  601 (602)
                      +..-.+.           ..+.++   .      |+++|..|++.+.||.|++.
T Consensus       737 ~k~~~~~-----------~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~  779 (902)
T 2oaj_A          737 HKGFKYP-----------LAATGLSYISTVEKNNDRKNLTVIITLEINGHLRVF  779 (902)
T ss_dssp             EEECSSC-----------EEEEEEEEEEEECSSSCEEEEEEEEEEETTSEEEEE
T ss_pred             eeEcccc-----------eeeeEEEEEEeccccccccCceEEEEEeCCCcEEEE
Confidence            6653332           223343   6      88999999999999999874

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=2.7e-46  Score=404.69  Aligned_cols=399  Identities=18%  Similarity=0.271  Sum_probs=321.7

Q ss_pred             eeeeeeeccCCceEEEEECCCCCeEEEeeCCceEEEEecCCceeEEEeeccCceEEEEeCCCCCCCCCCCCccccccccc
Q psy12697        131 ECLNTLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKGTGGIFEVCWNSRGTPPNPPESMEVDASIEI  210 (602)
Q Consensus       131 ~~~~~l~~h~~~V~~~~~s~d~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (602)
                      +..+.+.+|.+.|++++|+|++++||+++.||.|+|||+.+++.+.                                  
T Consensus         4 ~~~~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~----------------------------------   49 (814)
T 3mkq_A            4 DIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVR----------------------------------   49 (814)
T ss_dssp             CCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEE----------------------------------
T ss_pred             ccceeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEE----------------------------------
Confidence            4567889999999999999999999999999999999999998774                                  


Q ss_pred             cCCcceEeeCCCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEeeCC
Q psy12697        211 PQSKATKLIGHESEVFICAWNPVKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNN  290 (602)
Q Consensus       211 ~~~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  290 (602)
                            .+.+|...|.+++|+|++++|++++.||.|++||+.+++...     .           ...|...|++++|+|
T Consensus        50 ------~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~-----~-----------~~~~~~~v~~~~~s~  107 (814)
T 3mkq_A           50 ------SIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVV-----D-----------FEAHPDYIRSIAVHP  107 (814)
T ss_dssp             ------EEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEE-----E-----------EECCSSCEEEEEECS
T ss_pred             ------EEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEE-----E-----------EecCCCCEEEEEEeC
Confidence                  345799999999999999999999999999999998765321     1           123568899999999


Q ss_pred             CCCeEEEEeCCCeEEEEcCCC--cceeecccccCCeEEEEEcc-CCCEEEEEecCCcEEEEeCCCCceeEEeeecc-CCe
Q psy12697        291 NGSFLATGSYDGYARIWTSDG--SLKSTLGQHKGPIFALKWNK-RGNYILSAGVDKTTIIWDAASGQCEQQFSFHS-APA  366 (602)
Q Consensus       291 ~~~~l~~~~~dg~i~i~~~~~--~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~-~~~  366 (602)
                      ++++|++++.||.|++|+...  .....+..|...|.+++|+| +++.|++++.||.|++||+.++.....+..+. ..+
T Consensus       108 ~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v  187 (814)
T 3mkq_A          108 TKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGV  187 (814)
T ss_dssp             SSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCC
T ss_pred             CCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCE
Confidence            999999999999999999873  45667788999999999999 88999999999999999999888877776655 789


Q ss_pred             eeeeccC--C-CeEEEeeCCCeEEEEEcCCCceeeEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeeeEeec
Q psy12697        367 LDVDWQS--N-TSFASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHDLQ  443 (602)
Q Consensus       367 ~~~~~~~--~-~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  443 (602)
                      ..+.|+|  + ..+++++.+|.|++||+.+++.+..+.+|...|.+++|+|++++|++++.||.|++||+.+++.+..+.
T Consensus       188 ~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~  267 (814)
T 3mkq_A          188 NYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLN  267 (814)
T ss_dssp             CEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEEEEC
T ss_pred             EEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEee
Confidence            9999987  4 568899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccEEEEEECCCCCCC--CCCCcceeeee-------------------------------------------------
Q psy12697        444 AHNKEIYTIKWSPTGPET--SNPNMSLIFIL-------------------------------------------------  472 (602)
Q Consensus       444 ~~~~~i~~~~~~~~~~~~--~~~~~~~~~~~-------------------------------------------------  472 (602)
                      .+...+.+++|+|++...  +.........+                                                 
T Consensus       268 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  347 (814)
T 3mkq_A          268 VGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGNDEPTLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSL  347 (814)
T ss_dssp             CSSSSEEEEEECTTCGGGEEEEEETTEEEEEECSCCSCCEEECSSSEEEEECCTTSCTTCEEEEECCSCCCCCSSSCBCC
T ss_pred             cCCCcEEEEEEccCCCceEEEEEeCCCEEEEEcCCCCceeEECCCCCEEEECcccccceeeeeeecccccccccCcccee
Confidence            999999999999998632  21111111000                                                 


Q ss_pred             -eeccCCccCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCcee-----------------------------eeecccC
Q psy12697        473 -KSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCE-----------------------------QQFSFHS  522 (602)
Q Consensus       473 -~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~~~~~~~-----------------------------~~~~~~~  522 (602)
                       ......+...+.+++|+|+|+++++++ |+.+.+|++......                             ..+.+|.
T Consensus       348 ~~~~~~~~~~~~~~~~~spdg~~la~~~-~~~~~i~~~~~~~~~~~~~i~~~~~spdg~~la~~~~~g~v~l~~~~~~~~  426 (814)
T 3mkq_A          348 QTKELGSVDVFPQSLAHSPNGRFVTVVG-DGEYVIYTALAWRNKAFGKCQDFVWGPDSNSYALIDETGQIKYYKNFKEVT  426 (814)
T ss_dssp             CCEEECCCSSCCSEEEECTTSSEEEEEE-TTEEEEEETTTTEEEEEEECSEEEECTTSSCEEEECTTCCEEEEETTEECT
T ss_pred             eeecCCCCccCCceeEECCCCCEEEEec-CCEEEEEECccccccCCCceEEEEEeCCCCeEEEEeCCCcEEEEECCCCcc
Confidence             011133556788999999999999988 899999997543211                             1122344


Q ss_pred             CCeeEeeecCCc----eEEEeeCCCcEEEeecCCCCceeeeecccccceEEEEecCCcEEEEEECCCCCeEEEe------
Q psy12697        523 APALDVDWQSNT----SFASCSTDQHIHVCKLHSDKPVKSFEGHTTGQLVHSYKGTGGIFEVCWNSRGDKVGAS------  592 (602)
Q Consensus       523 ~~v~~~~~s~~~----~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~------  592 (602)
                      ..+.+++|+|++    .|++++.|+.|++||+.+++.+..+..+.              ..++|+|||++|+++      
T Consensus       427 ~~v~~~~~s~dg~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~--------------~~v~~s~dg~~la~~~~~~~~  492 (814)
T 3mkq_A          427 SWSVPMHSAIDRLFSGALLGVKSDGFVYFFDWDNGTLVRRIDVNA--------------KDVIWSDNGELVMIVNTNSNG  492 (814)
T ss_dssp             TCCCCCSSCCCEEECSSSEEEEETTEEEEECTTTCCEEEEESSCE--------------EEEEECTTSSEEEEEECCCSS
T ss_pred             ceEEcCCcCccceecceEEEEecCCEEEEEECCcCcEEEEEecCC--------------CEEEEcCCCCEEEEEEcCccc
Confidence            455566666665    56666666666666665555554444332              289999999999999      


Q ss_pred             ccCCeEEe
Q psy12697        593 ASDGSVFK  600 (602)
Q Consensus       593 ~~dg~v~i  600 (602)
                      +.++.+.+
T Consensus       493 ~~~~~~~~  500 (814)
T 3mkq_A          493 DEASGYTL  500 (814)
T ss_dssp             CSCSEEEE
T ss_pred             CCceEEEE
Confidence            66665544

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=1.6e-45  Score=354.48  Aligned_cols=294  Identities=22%  Similarity=0.368  Sum_probs=260.6

Q ss_pred             ceeeeeeeccCCceEEEEECCCCCeEEEeeCCceEEEEecCCceeEEEeeccCceEEEEeCCCCCCCCCCCCcccccccc
Q psy12697        130 GECLNTLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKGTGGIFEVCWNSRGTPPNPPESMEVDASIE  209 (602)
Q Consensus       130 ~~~~~~l~~h~~~V~~~~~s~d~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (602)
                      .+...++.+|.+.|++++|+||+++|++|+.|++|+|||+.+++.+..                                
T Consensus        45 ~~~~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~--------------------------------   92 (340)
T 1got_B           45 MRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHA--------------------------------   92 (340)
T ss_dssp             CCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEE--------------------------------
T ss_pred             chhheeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceE--------------------------------
Confidence            456788999999999999999999999999999999999999887643                                


Q ss_pred             ccCCcceEeeCCCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEeeC
Q psy12697        210 IPQSKATKLIGHESEVFICAWNPVKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWN  289 (602)
Q Consensus       210 ~~~~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  289 (602)
                              +..|...|.+++|+|++++|++++.|+.+++|++.+....                                
T Consensus        93 --------~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~--------------------------------  132 (340)
T 1got_B           93 --------IPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGN--------------------------------  132 (340)
T ss_dssp             --------EECSSSCEEEEEECTTSSEEEEEETTCEEEEEETTTCSBS--------------------------------
T ss_pred             --------eecCCccEEEEEECCCCCEEEEEeCCCeEEEEECccCCCc--------------------------------
Confidence                    4568889999999999999999999999999998653210                                


Q ss_pred             CCCCeEEEEeCCCeEEEEcCCCcceeecccccCCeEEEEEccCCCEEEEEecCCcEEEEeCCCCceeEEeeeccCCeeee
Q psy12697        290 NNGSFLATGSYDGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDV  369 (602)
Q Consensus       290 ~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~  369 (602)
                                           ......+.+|...|.++.|++++. +++++.|+.|++||+++++....+..|...+.++
T Consensus       133 ---------------------~~~~~~~~~h~~~v~~~~~~~~~~-l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~  190 (340)
T 1got_B          133 ---------------------VRVSRELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSL  190 (340)
T ss_dssp             ---------------------CEEEEEEECCSSCEEEEEEEETTE-EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEE
T ss_pred             ---------------------ceeEEEecCCCccEEEEEECCCCc-EEEEECCCcEEEEECCCCcEEEEEcCCCCceEEE
Confidence                                 001123446888999999998865 8899999999999999999999999999999999


Q ss_pred             eccCCC-eEEEeeCCCeEEEEEcCCCceeeEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeeeEeecccccc
Q psy12697        370 DWQSNT-SFASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHDLQAHNKE  448 (602)
Q Consensus       370 ~~~~~~-~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~  448 (602)
                      +|+|++ .+++++.|+.|++||+++++.+..+.+|...|.+++|+|++++|++|+.||.|++||+++++.+..+..+   
T Consensus       191 ~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~---  267 (340)
T 1got_B          191 SLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHD---  267 (340)
T ss_dssp             EECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCT---
T ss_pred             EECCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccC---
Confidence            999985 5889999999999999999999999999999999999999999999999999999999987766554311   


Q ss_pred             EEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeeecccCCCeeEe
Q psy12697        449 IYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDV  528 (602)
Q Consensus       449 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~  528 (602)
                                                   .+...|.+++|+|+|++|++|+.||.|++||+.+++.+..+.+|..+|.++
T Consensus       268 -----------------------------~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~  318 (340)
T 1got_B          268 -----------------------------NIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCL  318 (340)
T ss_dssp             -----------------------------TCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEE
T ss_pred             -----------------------------CcccceEEEEECCCCCEEEEECCCCeEEEEEcccCcEeeEeecCCCcEEEE
Confidence                                         134568889999999999999999999999999999999999999999999


Q ss_pred             eecCCc-eEEEeeCCCcEEEee
Q psy12697        529 DWQSNT-SFASCSTDQHIHVCK  549 (602)
Q Consensus       529 ~~s~~~-~l~~~~~d~~i~iw~  549 (602)
                      +|+|++ .|++|+.|+.|++||
T Consensus       319 ~~s~dg~~l~s~s~D~~i~iWd  340 (340)
T 1got_B          319 GVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             EECTTSSCEEEEETTSCEEEEC
T ss_pred             EEcCCCCEEEEEcCCccEEecC
Confidence            999999 999999999999997

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=2.6e-46  Score=365.68  Aligned_cols=318  Identities=21%  Similarity=0.389  Sum_probs=272.7

Q ss_pred             cceeeeecccceeeeeeeccCCceEEEEECCCCCeEEEeeCCceEEEEecCCceeEEEeeccCceEEEEeCCCCCCCCCC
Q psy12697        120 LTLPLWDVERGECLNTLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKGTGGIFEVCWNSRGTPPNPP  199 (602)
Q Consensus       120 ~~i~vwd~~~~~~~~~l~~h~~~V~~~~~s~d~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (602)
                      ..+..|+..+..+.++|.+|.+.|++++|+|++++|+||+.|++|+|||+.+++....                      
T Consensus        46 ~~~~~~~~~~~~~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~----------------------  103 (380)
T 3iz6_a           46 RTAVSFNPTDLVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHA----------------------  103 (380)
T ss_dssp             GGCCCCCCCCCEEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEE----------------------
T ss_pred             ccccccccceeEEeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceE----------------------
Confidence            4566788889999999999999999999999999999999999999999999887743                      


Q ss_pred             CCccccccccccCCcceEeeCCCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCC
Q psy12697        200 ESMEVDASIEIPQSKATKLIGHESEVFICAWNPVKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPS  279 (602)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (602)
                                        +.+|...|.+++|+|++++|++++.|+.+++|++.+.....                     
T Consensus       104 ------------------~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~~~~~~~~---------------------  144 (380)
T 3iz6_a          104 ------------------IKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQADRD---------------------  144 (380)
T ss_dssp             ------------------EECCCTTCCCCEECTTSSEEEECCSSSCCEEEECCCCSSCC---------------------
T ss_pred             ------------------EecCCCCEEEEEECCCCCEEEEeeCCCcEEEEECCCCcccc---------------------
Confidence                              45688999999999999999999999999999987542110                     


Q ss_pred             CCceeEEeeCCCCCeEEEEeCCCeEEEEcCCCcceeecccccCCeEEEEEccCC-CEEEEEecCCcEEEEeCCCCceeEE
Q psy12697        280 NKDVTSLDWNNNGSFLATGSYDGYARIWTSDGSLKSTLGQHKGPIFALKWNKRG-NYILSAGVDKTTIIWDAASGQCEQQ  358 (602)
Q Consensus       280 ~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~~wd~~~~~~~~~  358 (602)
                                  +                 .......+.+|.+.|.++.|+|++ ..|++++.|++|++||+.+++.+..
T Consensus       145 ------------~-----------------~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~  195 (380)
T 3iz6_a          145 ------------G-----------------NMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISI  195 (380)
T ss_dssp             ------------C-----------------SSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEE
T ss_pred             ------------C-----------------CccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEE
Confidence                        0                 011223456788899999999864 5799999999999999999998877


Q ss_pred             e-----eeccCCeeeeeccC--CCeEEEeeCCCeEEEEEcC-CCceeeEeccCCCCeEEEEECCCCCEEEEEECCCeEEE
Q psy12697        359 F-----SFHSAPALDVDWQS--NTSFASCSTDQHIHVCKLH-SDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKI  430 (602)
Q Consensus       359 ~-----~~~~~~~~~~~~~~--~~~~~~~~~~~~i~i~d~~-~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i  430 (602)
                      +     ..|...+.++.+.+  ...+++|+.|+.|++||++ ..+.+..+.+|...|.+++|+|++++|++|+.||+|++
T Consensus       196 ~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~l  275 (380)
T 3iz6_a          196 FGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRL  275 (380)
T ss_dssp             ECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEE
T ss_pred             eecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEE
Confidence            6     56788899999876  3679999999999999998 55788899999999999999999999999999999999


Q ss_pred             EeCCCCeeeEeeccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCCCeEEEEeCC
Q psy12697        431 WSLDKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAA  510 (602)
Q Consensus       431 wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~~  510 (602)
                      ||+++++.+..+..+...                           ...+...|.+++|+|+|++|++|+.||.|++||+.
T Consensus       276 wd~~~~~~~~~~~~~~~~---------------------------~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~  328 (380)
T 3iz6_a          276 FDMRTGHQLQVYNREPDR---------------------------NDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTL  328 (380)
T ss_dssp             EETTTTEEEEEECCCCSS---------------------------SCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETT
T ss_pred             EECCCCcEEEEecccccc---------------------------cccccCceEEEEECCCCCEEEEEECCCCEEEEECC
Confidence            999999887766543211                           11234568899999999999999999999999999


Q ss_pred             CCceeeee----cccCCCeeEeeecCCc-eEEEeeCCCcEEEeecCCCC
Q psy12697        511 SGQCEQQF----SFHSAPALDVDWQSNT-SFASCSTDQHIHVCKLHSDK  554 (602)
Q Consensus       511 ~~~~~~~~----~~~~~~v~~~~~s~~~-~l~~~~~d~~i~iw~~~~~~  554 (602)
                      +++.+..+    .+|.+.|.+++|+|++ .|++|+.|+.|++|++...+
T Consensus       329 ~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~~~  377 (380)
T 3iz6_a          329 LAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFSGHR  377 (380)
T ss_dssp             TCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEECCSSS
T ss_pred             CCceEEEEecccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEecCCCc
Confidence            99888776    6799999999999999 99999999999999987654

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=5.7e-45  Score=352.06  Aligned_cols=296  Identities=25%  Similarity=0.337  Sum_probs=260.8

Q ss_pred             eeeeeeeccCCceEEEEECCCCCeEEEeeCCceEEEEecCCceeEEEeeccCceEEEEeCCCCCCCCCCCCccccccccc
Q psy12697        131 ECLNTLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKGTGGIFEVCWNSRGTPPNPPESMEVDASIEI  210 (602)
Q Consensus       131 ~~~~~l~~h~~~V~~~~~s~d~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (602)
                      +..+++.+|.+.|++++|+||+++||||+.|++|+|||..+++....                                 
T Consensus        55 ~~~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~---------------------------------  101 (354)
T 2pbi_B           55 KTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHA---------------------------------  101 (354)
T ss_dssp             CEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEE---------------------------------
T ss_pred             EEEEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceE---------------------------------
Confidence            56788999999999999999999999999999999999988877643                                 


Q ss_pred             cCCcceEeeCCCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEeeCC
Q psy12697        211 PQSKATKLIGHESEVFICAWNPVKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNN  290 (602)
Q Consensus       211 ~~~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  290 (602)
                             +..|...|.+++|+|++.+|++++.|+.+++|++........                               
T Consensus       102 -------~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~~~~~~~~~-------------------------------  143 (354)
T 2pbi_B          102 -------VTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNENM-------------------------------  143 (354)
T ss_dssp             -------EECSSSCCCEEEECTTSSEEEEESTTSEEEEEECCCCTTCCS-------------------------------
T ss_pred             -------EecCCCCEEEEEECCCCCEEEEeeCCCCEEEEEEeccccccc-------------------------------
Confidence                   345788899999999999999999999999999864321100                               


Q ss_pred             CCCeEEEEeCCCeEEEEcCCCcceeecccccCCeEEEEEccCCCEEEEEecCCcEEEEeCCCCceeEEeeeccCCeeeee
Q psy12697        291 NGSFLATGSYDGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVD  370 (602)
Q Consensus       291 ~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~  370 (602)
                                          ......+..|...|.+++|+|+++.|++++.|++|++||+++++.+..+..|...+.++.
T Consensus       144 --------------------~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~  203 (354)
T 2pbi_B          144 --------------------AAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLD  203 (354)
T ss_dssp             --------------------GGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEE
T ss_pred             --------------------cccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEE
Confidence                                011223346888999999999999999999999999999999999999999999999998


Q ss_pred             ccCC---CeEEEeeCCCeEEEEEcCCCceeeEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeeeEeeccccc
Q psy12697        371 WQSN---TSFASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHDLQAHNK  447 (602)
Q Consensus       371 ~~~~---~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~  447 (602)
                      +.++   ..+++++.|+.|++||+++++.+..+.+|...|.+++|+|++++|++++.|++|++||++.++.+..+..+  
T Consensus       204 ~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~--  281 (354)
T 2pbi_B          204 LAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKE--  281 (354)
T ss_dssp             ECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCT--
T ss_pred             EEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCC--
Confidence            8763   57999999999999999999999999999999999999999999999999999999999987665444321  


Q ss_pred             cEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeeecccCCCeeE
Q psy12697        448 EIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALD  527 (602)
Q Consensus       448 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~  527 (602)
                                                    .+...+.+++|+|+|++|++|+.|+.|++||+.+++.+..+.+|...|++
T Consensus       282 ------------------------------~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~  331 (354)
T 2pbi_B          282 ------------------------------SIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVST  331 (354)
T ss_dssp             ------------------------------TCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEE
T ss_pred             ------------------------------CcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEECCCCcEEE
Confidence                                          12346788899999999999999999999999999999999999999999


Q ss_pred             eeecCCc-eEEEeeCCCcEEEee
Q psy12697        528 VDWQSNT-SFASCSTDQHIHVCK  549 (602)
Q Consensus       528 ~~~s~~~-~l~~~~~d~~i~iw~  549 (602)
                      ++|+||+ +|++|+.|+.|++|+
T Consensus       332 l~~spdg~~l~sgs~D~~v~vW~  354 (354)
T 2pbi_B          332 LRVSPDGTAFCSGSWDHTLRVWA  354 (354)
T ss_dssp             EEECTTSSCEEEEETTSEEEEEC
T ss_pred             EEECCCCCEEEEEcCCCCEEecC
Confidence            9999999 999999999999996

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=3.4e-45  Score=346.15  Aligned_cols=291  Identities=19%  Similarity=0.291  Sum_probs=245.8

Q ss_pred             eeeeeeeccCCceEEEEECCCCCeEEEeeCCceEEEEecCCceeEEEeeccCceEEEEeCCCCCCCCCCCCccccccccc
Q psy12697        131 ECLNTLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKGTGGIFEVCWNSRGTPPNPPESMEVDASIEI  210 (602)
Q Consensus       131 ~~~~~l~~h~~~V~~~~~s~d~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (602)
                      +..++|.+|.+.|++++|+|++++|++++.||+|++||+.+++.+..                                 
T Consensus         4 ~~~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~---------------------------------   50 (304)
T 2ynn_A            4 DIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRS---------------------------------   50 (304)
T ss_dssp             CCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEE---------------------------------
T ss_pred             eeEEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEE---------------------------------
Confidence            45678999999999999999999999999999999999999887743                                 


Q ss_pred             cCCcceEeeCCCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEeeCC
Q psy12697        211 PQSKATKLIGHESEVFICAWNPVKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNN  290 (602)
Q Consensus       211 ~~~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  290 (602)
                             +.+|..+|.+++|+|++++|++++.|++|++||+.+++                                   
T Consensus        51 -------~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~-----------------------------------   88 (304)
T 2ynn_A           51 -------IQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGE-----------------------------------   88 (304)
T ss_dssp             -------EECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCC-----------------------------------
T ss_pred             -------eeccCCcEEEEEEeCCCCEEEEECCCCEEEEEECCCCc-----------------------------------
Confidence                   45688889999999999999999999999999886542                                   


Q ss_pred             CCCeEEEEeCCCeEEEEcCCCcceeecccccCCeEEEEEccCCCEEEEEecCCcEEEEeCCCCceeEEeeeccCCeeeee
Q psy12697        291 NGSFLATGSYDGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVD  370 (602)
Q Consensus       291 ~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~  370 (602)
                                            ....+..|...|.+++|+|++++|++++.|++|++||++++..               
T Consensus        89 ----------------------~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~---------------  131 (304)
T 2ynn_A           89 ----------------------KVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWA---------------  131 (304)
T ss_dssp             ----------------------EEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTE---------------
T ss_pred             ----------------------EEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcc---------------
Confidence                                  1123446888899999999999999999999999999765421               


Q ss_pred             ccCCCeEEEeeCCCeEEEEEcCCCceeeEeccCCCCeEEEEECC-CCCEEEEEECCCeEEEEeCCCCeeeEeeccccccE
Q psy12697        371 WQSNTSFASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDP-QGLLLASCSDDMTLKIWSLDKDNCVHDLQAHNKEI  449 (602)
Q Consensus       371 ~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i  449 (602)
                                               ....+.+|...|.+++|+| ++.+|++|+.|+.|++||+++......+..     
T Consensus       132 -------------------------~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~-----  181 (304)
T 2ynn_A          132 -------------------------LEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTT-----  181 (304)
T ss_dssp             -------------------------EEEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEEC-----
T ss_pred             -------------------------hhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccceecc-----
Confidence                                     1244567889999999999 678999999999999999987665544432     


Q ss_pred             EEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEcc--CCCEEEEEeCCCeEEEEeCCCCceeeeecccCCCeeE
Q psy12697        450 YTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNK--RGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALD  527 (602)
Q Consensus       450 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~  527 (602)
                                                  +|...+..+.|+|  ++++|++++.|+.|++||+.+++++..+.+|...|.+
T Consensus       182 ----------------------------~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~  233 (304)
T 2ynn_A          182 ----------------------------GQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSF  233 (304)
T ss_dssp             ----------------------------CCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEE
T ss_pred             ----------------------------CCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCCCEEE
Confidence                                        1334555556654  7789999999999999999999999999999999999


Q ss_pred             eeecCCc-eEEEeeCCCcEEEeecCCCCceeeeecccccceEEEEecCCcEEEEEECCCCC--eEEEeccCCeEEeeC
Q psy12697        528 VDWQSNT-SFASCSTDQHIHVCKLHSDKPVKSFEGHTTGQLVHSYKGTGGIFEVCWNSRGD--KVGASASDGSVFKNV  602 (602)
Q Consensus       528 ~~~s~~~-~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~--~l~~~~~dg~v~i~v  602 (602)
                      ++|+|++ .|++++.||.|++||+.+++.+..+..+.           ..+.+++|+|+++  ++|++++||.+.+.+
T Consensus       234 ~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~asg~~~g~~~~~~  300 (304)
T 2ynn_A          234 AVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGL-----------ERSWCIATHPTGRKNYIASGFDNGFTVLSL  300 (304)
T ss_dssp             EEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCSS-----------SSEEEEEECTTCGGGCEEEEETTEEEEEEC
T ss_pred             EEECCCCCEEEEEcCCCeEEEEECCCCceeeeccCCC-----------ccEEEEEECCCCCceEEEEecCCceEEEEe
Confidence            9999999 99999999999999999888888776654           6799999999985  699999999887764

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=8.9e-46  Score=369.32  Aligned_cols=348  Identities=25%  Similarity=0.467  Sum_probs=282.6

Q ss_pred             eCCCcceEEEEEcCCCC-EEEEeeCCCcEEEEeC----CCCCCCCCccceEEEEEEecCCCcccCCCCceeEEeeCCCCC
Q psy12697        219 IGHESEVFICAWNPVKD-FLASGSGDSTARIWDM----TDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGS  293 (602)
Q Consensus       219 ~~h~~~v~~~~~~~~~~-~l~s~~~dg~i~iw~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  293 (602)
                      ..|...|.+++|+|+++ +|++++.||.|++|++    .++.............+..........|...|++++|+|+++
T Consensus        42 ~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~  121 (425)
T 1r5m_A           42 IVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGN  121 (425)
T ss_dssp             EEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSS
T ss_pred             eeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCC
Confidence            34678999999999999 9999999999999999    766532111111111111111111122467899999999999


Q ss_pred             eEEEEeCCCeEEEEcCCCcceeecccccCCeEEEEEccCCCEEEEEecCCcEEEEeCCCCceeEEeeeccCC--------
Q psy12697        294 FLATGSYDGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAP--------  365 (602)
Q Consensus       294 ~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~--------  365 (602)
                      +|++++.||.|++|+..+.....+..|...|.+++|+|++++|++++.|+.|++||+.+++....+..+...        
T Consensus       122 ~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  201 (425)
T 1r5m_A          122 SIVTGVENGELRLWNKTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAEN  201 (425)
T ss_dssp             EEEEEETTSCEEEEETTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC-----------
T ss_pred             EEEEEeCCCeEEEEeCCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccceeecc
Confidence            999999999999999888889999999999999999999999999999999999999999999888877776        


Q ss_pred             -------eeeeeccCCCeEEEeeCCCeEEEEEcCCCceeeEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCee
Q psy12697        366 -------ALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNC  438 (602)
Q Consensus       366 -------~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~  438 (602)
                             +.++.|.+++.+++++.++.|++||+.+++++..+..|...|.+++|+|++++|++++.||.|++||+++++.
T Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~  281 (425)
T 1r5m_A          202 HSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNS  281 (425)
T ss_dssp             ----CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSBSC
T ss_pred             ccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCcc
Confidence                   9999999999999999999999999999999999999999999999999999999999999999999998776


Q ss_pred             eEeeccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeee
Q psy12697        439 VHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQF  518 (602)
Q Consensus       439 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~  518 (602)
                      +..+..                                  |...|.+++|+|++ ++++++.||.|++||+.+++.+..+
T Consensus       282 ~~~~~~----------------------------------~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~  326 (425)
T 1r5m_A          282 QNCFYG----------------------------------HSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALS  326 (425)
T ss_dssp             SEEECC----------------------------------CSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEE
T ss_pred             ceEecC----------------------------------CCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEec
Confidence            665544                                  45566777777788 8999999999999999999999999


Q ss_pred             cccCCCeeEeeecCCc-eEEEeeCCCcEEEeecCCCCc-eeeeeccc-------ccceEEEEecC--C-cEEEEEECCCC
Q psy12697        519 SFHSAPALDVDWQSNT-SFASCSTDQHIHVCKLHSDKP-VKSFEGHT-------TGQLVHSYKGT--G-GIFEVCWNSRG  586 (602)
Q Consensus       519 ~~~~~~v~~~~~s~~~-~l~~~~~d~~i~iw~~~~~~~-~~~~~~~~-------~~~~~~~~~~~--~-~i~~l~~spdg  586 (602)
                      ..|...+.+++|+|++ .|++++.||.|++||+.+++. ...+.+..       ....+..+..+  + .|.+++|+|++
T Consensus       327 ~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~  406 (425)
T 1r5m_A          327 IVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAG  406 (425)
T ss_dssp             ECTTCCEEEEEECTTSSEEEEEETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECTTS
T ss_pred             ccCCccEEEEEEcCCCCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCC
Confidence            9999999999999999 999999999999999976651 11111000       01133444433  3 89999999999


Q ss_pred             CeEEEeccCCeEEee
Q psy12697        587 DKVGASASDGSVFKN  601 (602)
Q Consensus       587 ~~l~~~~~dg~v~i~  601 (602)
                      ++|++++.||.|++.
T Consensus       407 ~~l~~~~~dg~i~iw  421 (425)
T 1r5m_A          407 NKISVAYSLQEGSVV  421 (425)
T ss_dssp             SEEEEEESSSCCEEE
T ss_pred             ceEEEEecCceEEEE
Confidence            999999999998874

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=2.2e-45  Score=349.56  Aligned_cols=294  Identities=23%  Similarity=0.433  Sum_probs=256.4

Q ss_pred             cceeeeeeeccCCceEEEEECCC----CCeEEEeeCCceEEEEecCCceeEEEeeccCceEEEEeCCCCCCCCCCCCccc
Q psy12697        129 RGECLNTLTRHTEPVYSVAFSPD----GKFLASGSFDKCVHIWSARTGQLVHSYKGTGGIFEVCWNSRGTPPNPPESMEV  204 (602)
Q Consensus       129 ~~~~~~~l~~h~~~V~~~~~s~d----~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  204 (602)
                      .+...+.+.+|.+.|++++|+|+    +++|+||+.|++|+|||+.+++....                           
T Consensus        21 ~g~~~~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~---------------------------   73 (321)
T 3ow8_A           21 YGILFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQ---------------------------   73 (321)
T ss_dssp             CEEEEEETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEE---------------------------
T ss_pred             hhheeeecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeee---------------------------
Confidence            35566778899999999999985    67999999999999999987654321                           


Q ss_pred             cccccccCCcceEeeCCCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCcee
Q psy12697        205 DASIEIPQSKATKLIGHESEVFICAWNPVKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVT  284 (602)
Q Consensus       205 ~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  284 (602)
                                 ..+.+|...|.+++|+|++.++++++.|++|++||+.+++...     .           ...+...+.
T Consensus        74 -----------~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~~~-----~-----------~~~~~~~~~  126 (321)
T 3ow8_A           74 -----------WSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIK-----S-----------IDAGPVDAW  126 (321)
T ss_dssp             -----------EEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEE-----E-----------EECCTTCCC
T ss_pred             -----------eeeccCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCCEEE-----E-----------EeCCCccEE
Confidence                       3467899999999999999999999999999999998764321     0           112346788


Q ss_pred             EEeeCCCCCeEEEEeCCCeEEEEcCC-CcceeecccccCCeEEEEEccCCCEEEEEecCCcEEEEeCCCCceeEEeeecc
Q psy12697        285 SLDWNNNGSFLATGSYDGYARIWTSD-GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHS  363 (602)
Q Consensus       285 ~~~~~~~~~~l~~~~~dg~i~i~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~  363 (602)
                      +++|+|++++|++|+.+|.|++|+++ +.....+..|...|.+++|+|++++|++++.||.|++||+++++.+..+..|.
T Consensus       127 ~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~  206 (321)
T 3ow8_A          127 TLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHA  206 (321)
T ss_dssp             CEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCS
T ss_pred             EEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcccC
Confidence            99999999999999999999999987 55666777888999999999999999999999999999999999999999999


Q ss_pred             CCeeeeeccCCC-eEEEeeCCCeEEEEEcCCCceeeEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeeeEee
Q psy12697        364 APALDVDWQSNT-SFASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHDL  442 (602)
Q Consensus       364 ~~~~~~~~~~~~-~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~  442 (602)
                      .++.+++|+|++ .+++++.|+.|++||+++++....+.+|...|.+++|+|++++|++++.|+.|++||+++++++.++
T Consensus       207 ~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~  286 (321)
T 3ow8_A          207 MPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTF  286 (321)
T ss_dssp             SCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred             CceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEE
Confidence            999999999985 5888999999999999999999999999999999999999999999999999999999999888877


Q ss_pred             ccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCCCeEEEEeCC
Q psy12697        443 QAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAA  510 (602)
Q Consensus       443 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~~  510 (602)
                      ..|                                  ...|.+++|+|++++|++++.||.|++||..
T Consensus       287 ~~h----------------------------------~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~p  320 (321)
T 3ow8_A          287 FDH----------------------------------QDQVWGVKYNGNGSKIVSVGDDQEIHIYDCP  320 (321)
T ss_dssp             CCC----------------------------------SSCEEEEEECTTSSEEEEEETTCCEEEEECC
T ss_pred             cCC----------------------------------CCcEEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence            654                                  4556666677788999999999999999964

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=1.1e-44  Score=357.61  Aligned_cols=299  Identities=23%  Similarity=0.401  Sum_probs=268.1

Q ss_pred             CCCCceeEEeeCCCCCeEEEEeCCCeEEEEcCC-CcceeecccccCCeEEEEEccCCCEEEEEecCCcEEEEeCCCCcee
Q psy12697        278 PSNKDVTSLDWNNNGSFLATGSYDGYARIWTSD-GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCE  356 (602)
Q Consensus       278 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~  356 (602)
                      .|...|++++|+|++.+|++|+.||.|++||.. +.....+.+|...|.+++|+|++++|++++.|++|++||+.+++++
T Consensus       106 gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~  185 (410)
T 1vyh_C          106 GHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECI  185 (410)
T ss_dssp             CCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEE
T ss_pred             ccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcee
Confidence            356889999999999999999999999999976 6677888999999999999999999999999999999999999999


Q ss_pred             EEeeeccCCeeeeeccCCC-eEEEeeCCCeEEEEEcCCCceeeEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEeCCC
Q psy12697        357 QQFSFHSAPALDVDWQSNT-SFASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDK  435 (602)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~  435 (602)
                      ..+..|...+.++.|+|++ .+++++.|+.|++||+.++..+..+.+|...|.+++++|++++|++|+.|+.|++||+++
T Consensus       186 ~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~  265 (410)
T 1vyh_C          186 RTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVAT  265 (410)
T ss_dssp             ECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred             EEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcCCCeEEEEECCC
Confidence            9999999999999999975 688999999999999999999999999999999999999999999999999999999999


Q ss_pred             CeeeEeeccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCcee
Q psy12697        436 DNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCE  515 (602)
Q Consensus       436 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~~~~~~~  515 (602)
                      +++...+..|...+.+++|+|+........              ..........++|.+|++|+.|+.|++||+.++.++
T Consensus       266 ~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~  331 (410)
T 1vyh_C          266 KECKAELREHRHVVECISWAPESSYSSISE--------------ATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCL  331 (410)
T ss_dssp             CCEEEEECCCSSCEEEEEECCSCGGGGGGG--------------CCSCC-------CCEEEEEETTSEEEEEETTTTEEE
T ss_pred             CceeeEecCCCceEEEEEEcCcccccchhh--------------hccccccccCCCCCEEEEEeCCCeEEEEECCCCceE
Confidence            999999999999999999999765321110              000111223346889999999999999999999999


Q ss_pred             eeecccCCCeeEeeecCCc-eEEEeeCCCcEEEeecCCCCceeeeecccccceEEEEecCCcEEEEEECCCCCeEEEecc
Q psy12697        516 QQFSFHSAPALDVDWQSNT-SFASCSTDQHIHVCKLHSDKPVKSFEGHTTGQLVHSYKGTGGIFEVCWNSRGDKVGASAS  594 (602)
Q Consensus       516 ~~~~~~~~~v~~~~~s~~~-~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~  594 (602)
                      ..+.+|...|.+++|+|++ +|++++.|+.|++||+.+++++..+.+|.           ..|++++|+|++++|++|+.
T Consensus       332 ~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~-----------~~v~~l~~~~~~~~l~sgs~  400 (410)
T 1vyh_C          332 MTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHE-----------HFVTSLDFHKTAPYVVTGSV  400 (410)
T ss_dssp             EEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCS-----------SCEEEEEECSSSSCEEEEET
T ss_pred             EEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCCC-----------CcEEEEEEcCCCCEEEEEeC
Confidence            9999999999999999999 99999999999999999998888888775           67999999999999999999


Q ss_pred             CCeEEee
Q psy12697        595 DGSVFKN  601 (602)
Q Consensus       595 dg~v~i~  601 (602)
                      ||+|+|+
T Consensus       401 D~~i~vW  407 (410)
T 1vyh_C          401 DQTVKVW  407 (410)
T ss_dssp             TSEEEEE
T ss_pred             CCcEEEE
Confidence            9999985

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=1.1e-44  Score=349.05  Aligned_cols=321  Identities=25%  Similarity=0.406  Sum_probs=249.5

Q ss_pred             cceeeeeeeccCC-ceEEEEECCCCCeEEEeeCCceEEEEecCCceeEEEeeccCceEEEEeCCCCCCCCCCCCcccccc
Q psy12697        129 RGECLNTLTRHTE-PVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKGTGGIFEVCWNSRGTPPNPPESMEVDAS  207 (602)
Q Consensus       129 ~~~~~~~l~~h~~-~V~~~~~s~d~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  207 (602)
                      ..+++.++.+|.. .|.+++|+|+|++||+|+.|++|+|||+.++......                             
T Consensus         4 ~~~~~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~-----------------------------   54 (345)
T 3fm0_A            4 SLVLLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKS-----------------------------   54 (345)
T ss_dssp             CEEEEEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEE-----------------------------
T ss_pred             cEEEeeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeee-----------------------------
Confidence            3467889999988 9999999999999999999999999999887644221                             


Q ss_pred             ccccCCcceEeeCCCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEe
Q psy12697        208 IEIPQSKATKLIGHESEVFICAWNPVKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLD  287 (602)
Q Consensus       208 ~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  287 (602)
                              ....+|...|.+++|+|++++|++++.|+++++|++..+...      .. .       ....|...|.+++
T Consensus        55 --------~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~------~~-~-------~~~~h~~~v~~v~  112 (345)
T 3fm0_A           55 --------VLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFE------CV-T-------TLEGHENEVKSVA  112 (345)
T ss_dssp             --------EECSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC-EE------EE-E-------EECCCSSCEEEEE
T ss_pred             --------eeccccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCCCeE------EE-E-------EccCCCCCceEEE
Confidence                    123579999999999999999999999999999998765311      00 0       1234678899999


Q ss_pred             eCCCCCeEEEEeCCCeEEEEcCCCc----ceeecccccCCeEEEEEccCCCEEEEEecCCcEEEEeCCCCceeEEeeecc
Q psy12697        288 WNNNGSFLATGSYDGYARIWTSDGS----LKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHS  363 (602)
Q Consensus       288 ~~~~~~~l~~~~~dg~i~i~~~~~~----~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~  363 (602)
                      |+|++++|++|+.|+.|++||+...    ....+..|...|.+++|+|++++|++++.|+.|++||.++++..       
T Consensus       113 ~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~-------  185 (345)
T 3fm0_A          113 WAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWV-------  185 (345)
T ss_dssp             ECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEEE-------
T ss_pred             EeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEE-------
Confidence            9999999999999999999998632    34567789999999999999999999999999999997654211       


Q ss_pred             CCeeeeeccCCCeEEEeeCCCeEEEEEcCCCceeeEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeeeEeec
Q psy12697        364 APALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHDLQ  443 (602)
Q Consensus       364 ~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  443 (602)
                                                      ....+.+|...|.+++|+|++++|++++.|++|++||.........+.
T Consensus       186 --------------------------------~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~  233 (345)
T 3fm0_A          186 --------------------------------CCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVA  233 (345)
T ss_dssp             --------------------------------EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCC
T ss_pred             --------------------------------EEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccce
Confidence                                            124567899999999999999999999999999999964321110000


Q ss_pred             cccccEEEEEECCCCCCCCCCCcceeeeeeeccC-CccCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCce--------
Q psy12697        444 AHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLG-QHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQC--------  514 (602)
Q Consensus       444 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~~~~~~--------  514 (602)
                      .                   ........+...+. .|...|.+++|+|++.+|++++.|+.|++|+...+..        
T Consensus       234 ~-------------------~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~  294 (345)
T 3fm0_A          234 C-------------------SGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSL  294 (345)
T ss_dssp             C-------------------C---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEE
T ss_pred             e-------------------eccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEE
Confidence            0                   00000111112222 3888999999999999999999999999999875431        


Q ss_pred             -eeeecccCCCeeEeeecCCc--eEEEeeCCCcEEEeecCCCCceee
Q psy12697        515 -EQQFSFHSAPALDVDWQSNT--SFASCSTDQHIHVCKLHSDKPVKS  558 (602)
Q Consensus       515 -~~~~~~~~~~v~~~~~s~~~--~l~~~~~d~~i~iw~~~~~~~~~~  558 (602)
                       .....+|...|++++|+|++  .|++|+.||.|++|++.+++....
T Consensus       295 ~~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~~~~~~~  341 (345)
T 3fm0_A          295 TAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQRPEGLHH  341 (345)
T ss_dssp             EEEETTSSSSCEEEEEECSSSTTEEEEEETTSCEEEEEECC------
T ss_pred             EeeecccccCcEeEeEEeCCCceEEEEcCCCCcEEEEEecCCCCccc
Confidence             12345799999999999986  899999999999999987765443

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=3.1e-44  Score=341.64  Aligned_cols=279  Identities=20%  Similarity=0.347  Sum_probs=253.4

Q ss_pred             CCCCceeEEeeCCC----CCeEEEEeCCCeEEEEcCCCc---ceeecccccCCeEEEEEccCCCEEEEEecCCcEEEEeC
Q psy12697        278 PSNKDVTSLDWNNN----GSFLATGSYDGYARIWTSDGS---LKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDA  350 (602)
Q Consensus       278 ~~~~~i~~~~~~~~----~~~l~~~~~dg~i~i~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~  350 (602)
                      .|...|.+++|+|+    +.+|++|+.|+.|++|+....   ....+.+|...|.+++|++++..+++++.|++|++||+
T Consensus        30 ~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~  109 (321)
T 3ow8_A           30 AHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDL  109 (321)
T ss_dssp             SSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEET
T ss_pred             cCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCCcEEEEEC
Confidence            46889999999984    678999999999999997643   23467899999999999999999999999999999999


Q ss_pred             CCCceeEEeeeccCCeeeeeccCCC-eEEEeeCCCeEEEEEcCCCceeeEeccCCCCeEEEEECCCCCEEEEEECCCeEE
Q psy12697        351 ASGQCEQQFSFHSAPALDVDWQSNT-SFASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLK  429 (602)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~  429 (602)
                      .+++.+..+..+...+.+++|+|++ .+++++.++.|++|++.+++....+..|...|.+++|+|++++|++|+.||.|+
T Consensus       110 ~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~lasg~~dg~i~  189 (321)
T 3ow8_A          110 ENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIIN  189 (321)
T ss_dssp             TTTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred             CCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCEEEEEcCCCeEE
Confidence            9999999999999999999999985 588889999999999999999999999999999999999999999999999999


Q ss_pred             EEeCCCCeeeEeeccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCCCeEEEEeC
Q psy12697        430 IWSLDKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDA  509 (602)
Q Consensus       430 iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~  509 (602)
                      +||+++++.+..+..                                  |..+|.+++|+|++++|++++.|+.|++||+
T Consensus       190 iwd~~~~~~~~~~~~----------------------------------h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~  235 (321)
T 3ow8_A          190 IFDIATGKLLHTLEG----------------------------------HAMPIRSLTFSPDSQLLVTASDDGYIKIYDV  235 (321)
T ss_dssp             EEETTTTEEEEEECC----------------------------------CSSCCCEEEECTTSCEEEEECTTSCEEEEET
T ss_pred             EEECCCCcEEEEEcc----------------------------------cCCceeEEEEcCCCCEEEEEcCCCeEEEEEC
Confidence            999999888777654                                  4556777778888999999999999999999


Q ss_pred             CCCceeeeecccCCCeeEeeecCCc-eEEEeeCCCcEEEeecCCCCceeeeecccccceEEEEecCCcEEEEEECCCCCe
Q psy12697        510 ASGQCEQQFSFHSAPALDVDWQSNT-SFASCSTDQHIHVCKLHSDKPVKSFEGHTTGQLVHSYKGTGGIFEVCWNSRGDK  588 (602)
Q Consensus       510 ~~~~~~~~~~~~~~~v~~~~~s~~~-~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~  588 (602)
                      .++++...+.+|...|.+++|+|++ .|++++.|+.|++||+.+++++..+.+|.           +.|.+++|+|+|++
T Consensus       236 ~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~-----------~~v~~v~~s~~g~~  304 (321)
T 3ow8_A          236 QHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQ-----------DQVWGVKYNGNGSK  304 (321)
T ss_dssp             TTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCS-----------SCEEEEEECTTSSE
T ss_pred             CCcceeEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCC-----------CcEEEEEECCCCCE
Confidence            9999999999999999999999999 99999999999999999988888887765           77999999999999


Q ss_pred             EEEeccCCeEEee
Q psy12697        589 VGASASDGSVFKN  601 (602)
Q Consensus       589 l~~~~~dg~v~i~  601 (602)
                      |++++.||.|+|.
T Consensus       305 l~s~~~d~~i~vw  317 (321)
T 3ow8_A          305 IVSVGDDQEIHIY  317 (321)
T ss_dssp             EEEEETTCCEEEE
T ss_pred             EEEEeCCCeEEEE
Confidence            9999999999874

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=9e-45  Score=350.84  Aligned_cols=307  Identities=16%  Similarity=0.279  Sum_probs=231.5

Q ss_pred             cceeeeecccceeeeeeeccCCceEEEEECCCCCeEEEeeC------CceEEEEecCCceeEEEeeccCceEEEEeCCCC
Q psy12697        120 LTLPLWDVERGECLNTLTRHTEPVYSVAFSPDGKFLASGSF------DKCVHIWSARTGQLVHSYKGTGGIFEVCWNSRG  193 (602)
Q Consensus       120 ~~i~vwd~~~~~~~~~l~~h~~~V~~~~~s~d~~~l~s~~~------d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  193 (602)
                      .....|++....    ..+|...|++++|||||++||+++.      |++|++|+..++.....+               
T Consensus        26 ~~~~~w~~p~~~----p~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~---------------   86 (357)
T 4g56_B           26 SKGSAWGRPVTA----PACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESL---------------   86 (357)
T ss_dssp             ------------------CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGG---------------
T ss_pred             ccccccCCCCCC----cccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeE---------------
Confidence            345678765433    3579999999999999999999997      788999988776543211               


Q ss_pred             CCCCCCCCccccccccccCCcceEeeCCCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCccceEEEEEEecCC
Q psy12697        194 TPPNPPESMEVDASIEIPQSKATKLIGHESEVFICAWNPVKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKG  273 (602)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~  273 (602)
                                           .....+|...|.+++|+|++. +++++.||+|++||+.+++.......           
T Consensus        87 ---------------------~~~~~~~~~~V~~~~~s~d~~-~l~~s~dg~v~lWd~~~~~~~~~~~~-----------  133 (357)
T 4g56_B           87 ---------------------CTAGVQTEAGVTDVAWVSEKG-ILVASDSGAVELWEILEKESLLVNKF-----------  133 (357)
T ss_dssp             ---------------------CSEEEECSSCEEEEEEETTTE-EEEEETTSCEEEC--------CCCCE-----------
T ss_pred             ---------------------ecccCCCCCCEEEEEEcCCCC-EEEEECCCEEEEeeccccceeEEEee-----------
Confidence                                 134457899999999999875 55678899999999988764322211           


Q ss_pred             CcccCCCCceeEEeeCCCCCeEEEEeCCCeEEEEcCC-CcceeecccccCCeEEEEEccCCC-EEEEEecCCcEEEEeCC
Q psy12697        274 GTEVPSNKDVTSLDWNNNGSFLATGSYDGYARIWTSD-GSLKSTLGQHKGPIFALKWNKRGN-YILSAGVDKTTIIWDAA  351 (602)
Q Consensus       274 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~-~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~~wd~~  351 (602)
                       ....|...|++++|+|++++|++|+.||.|++||.+ +.....+..|...|.+++|+|+++ .+++++.||.|++||++
T Consensus       134 -~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~  212 (357)
T 4g56_B          134 -AKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTR  212 (357)
T ss_dssp             -EECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTT
T ss_pred             -ccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECC
Confidence             122467889999999999999999999999999987 667778889999999999999875 78899999999999998


Q ss_pred             CCceeEEeeeccCCeeeeeccCCCeEEEeeCCCeEEEEEcCCCceeeEeccCCCCeEEEEECCC-CCEEEEEECCCeEEE
Q psy12697        352 SGQCEQQFSFHSAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQ-GLLLASCSDDMTLKI  430 (602)
Q Consensus       352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~i~i  430 (602)
                      +++....+                                       .+..|...+.+++|+|+ +.+|++|+.|+.|++
T Consensus       213 ~~~~~~~~---------------------------------------~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~  253 (357)
T 4g56_B          213 KPKPATRI---------------------------------------DFCASDTIPTSVTWHPEKDDTFACGDETGNVSL  253 (357)
T ss_dssp             SSSCBCBC---------------------------------------CCTTCCSCEEEEEECTTSTTEEEEEESSSCEEE
T ss_pred             CCceeeee---------------------------------------eeccccccccchhhhhcccceEEEeecccceeE
Confidence            76543322                                       12335667899999997 568999999999999


Q ss_pred             EeCCCCeeeEeeccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCC-CEEEEEeCCCeEEEEeC
Q psy12697        431 WSLDKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRG-NYILSAGVDKTTIIWDA  509 (602)
Q Consensus       431 wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~-~~l~s~~~dg~i~iwd~  509 (602)
                      ||+++++++..+..|...                                  |++++|+|++ ++|++|+.|++|+|||+
T Consensus       254 wd~~~~~~~~~~~~~~~~----------------------------------v~~l~~sp~~~~~lasgs~D~~i~iwd~  299 (357)
T 4g56_B          254 VNIKNPDSAQTSAVHSQN----------------------------------ITGLAYSYHSSPFLASISEDCTVAVLDA  299 (357)
T ss_dssp             EESSCGGGCEEECCCSSC----------------------------------EEEEEECSSSSCCEEEEETTSCEEEECT
T ss_pred             EECCCCcEeEEEecccee----------------------------------EEEEEEcCCCCCEEEEEeCCCEEEEEEC
Confidence            999998888777665554                                  4555555555 67999999999999999


Q ss_pred             CCCceeeeecccCCCeeEeeecC-Cc-eEEEeeCCCcEEEeecCCC
Q psy12697        510 ASGQCEQQFSFHSAPALDVDWQS-NT-SFASCSTDQHIHVCKLHSD  553 (602)
Q Consensus       510 ~~~~~~~~~~~~~~~v~~~~~s~-~~-~l~~~~~d~~i~iw~~~~~  553 (602)
                      ++++++..+ +|.+.|++++|+| |+ +|++++.||+|++|++.+.
T Consensus       300 ~~~~~~~~~-~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~  344 (357)
T 4g56_B          300 DFSEVFRDL-SHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPSE  344 (357)
T ss_dssp             TSCEEEEEC-CCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC--
T ss_pred             CCCcEeEEC-CCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCC
Confidence            999887765 6999999999999 67 9999999999999998654

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.5e-44  Score=357.78  Aligned_cols=349  Identities=14%  Similarity=0.244  Sum_probs=281.7

Q ss_pred             cceeeeecccceeeeeeeccCCceEEEEECCCCC-eEEEeeCCceEEEEec----CCcee------EEEeeccCceEEEE
Q psy12697        120 LTLPLWDVERGECLNTLTRHTEPVYSVAFSPDGK-FLASGSFDKCVHIWSA----RTGQL------VHSYKGTGGIFEVC  188 (602)
Q Consensus       120 ~~i~vwd~~~~~~~~~l~~h~~~V~~~~~s~d~~-~l~s~~~d~~v~iwd~----~~~~~------~~~~~~~~~~~~~~  188 (602)
                      ..+.+||++..........|.+.|++++|+|+++ +||+++.|+.|++||+    .+++.      ...+...       
T Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~-------   97 (425)
T 1r5m_A           25 SIDSSDDLDGFVKILKEIVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHP-------   97 (425)
T ss_dssp             ---------CCCEECEEEEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECC-------
T ss_pred             cccccccchhhhhheeeeeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCcccccccccccccccc-------
Confidence            4567888877766666667889999999999999 9999999999999999    88873      3332210       


Q ss_pred             eCCCCCCCCCCCCccccccccccCCcceEeeCCCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCccceEEEEE
Q psy12697        189 WNSRGTPPNPPESMEVDASIEIPQSKATKLIGHESEVFICAWNPVKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRH  268 (602)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~  268 (602)
                                             ........+|...|.+++|+|++++|++++.||.|++||. ++..     ..     
T Consensus        98 -----------------------~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~~~-~~~~-----~~-----  143 (425)
T 1r5m_A           98 -----------------------FALSASSGKTTNQVTCLAWSHDGNSIVTGVENGELRLWNK-TGAL-----LN-----  143 (425)
T ss_dssp             -----------------------CCCC------CBCEEEEEECTTSSEEEEEETTSCEEEEET-TSCE-----EE-----
T ss_pred             -----------------------ccccccccCCCCceEEEEEcCCCCEEEEEeCCCeEEEEeC-CCCe-----ee-----
Confidence                                   0000123457889999999999999999999999999993 2221     11     


Q ss_pred             EecCCCcccCCCCceeEEeeCCCCCeEEEEeCCCeEEEEcCC-CcceeecccccCC---------------eEEEEEccC
Q psy12697        269 CISKGGTEVPSNKDVTSLDWNNNGSFLATGSYDGYARIWTSD-GSLKSTLGQHKGP---------------IFALKWNKR  332 (602)
Q Consensus       269 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~-~~~~~~~~~~~~~---------------i~~~~~~~~  332 (602)
                            ....|...|.+++|+|++++|++++.||.|++||+. +.....+..+...               +.+++|+|+
T Consensus       144 ------~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  217 (425)
T 1r5m_A          144 ------VLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDD  217 (425)
T ss_dssp             ------EECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC---------------CCCBSCCEEEET
T ss_pred             ------eccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCC
Confidence                  112356889999999999999999999999999986 5566666666666               899999998


Q ss_pred             CCEEEEEecCCcEEEEeCCCCceeEEeeeccCCeeeeeccCCC-eEEEeeCCCeEEEEEcCCCceeeEeccCCCCeEEEE
Q psy12697        333 GNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNT-SFASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIK  411 (602)
Q Consensus       333 ~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~  411 (602)
                      + .+++++.+|.|++||+.+++....+..+...+.+++|++++ .+++++.|+.|++||+.+++.+..+.+|...|.+++
T Consensus       218 ~-~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~  296 (425)
T 1r5m_A          218 D-KFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSAS  296 (425)
T ss_dssp             T-EEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSBSCSEEECCCSSCEEEEE
T ss_pred             C-EEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCccceEecCCCccEEEEE
Confidence            5 58899999999999999999999999999999999999875 688899999999999999999999999999999999


Q ss_pred             ECCCCCEEEEEECCCeEEEEeCCCCeeeEeeccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccC
Q psy12697        412 WDPQGLLLASCSDDMTLKIWSLDKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKR  491 (602)
Q Consensus       412 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~  491 (602)
                      |+|++ ++++++.|+.|++||+++++.+..+..                                  |...|.+++|+|+
T Consensus       297 ~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~----------------------------------~~~~i~~~~~s~~  341 (425)
T 1r5m_A          297 WVGDD-KVISCSMDGSVRLWSLKQNTLLALSIV----------------------------------DGVPIFAGRISQD  341 (425)
T ss_dssp             EETTT-EEEEEETTSEEEEEETTTTEEEEEEEC----------------------------------TTCCEEEEEECTT
T ss_pred             ECCCC-EEEEEeCCCcEEEEECCCCcEeEeccc----------------------------------CCccEEEEEEcCC
Confidence            99999 999999999999999999887776655                                  4455667777778


Q ss_pred             CCEEEEEeCCCeEEEEeCCCCc--------------------eeeeecccCC--CeeEeeecCCc-eEEEeeCCCcEEEe
Q psy12697        492 GNYILSAGVDKTTIIWDAASGQ--------------------CEQQFSFHSA--PALDVDWQSNT-SFASCSTDQHIHVC  548 (602)
Q Consensus       492 ~~~l~s~~~dg~i~iwd~~~~~--------------------~~~~~~~~~~--~v~~~~~s~~~-~l~~~~~d~~i~iw  548 (602)
                      +++|++++.||.|++||+.+++                    ++..+..|..  .|.+++|+|++ +|++++.||.|++|
T Consensus       342 ~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw  421 (425)
T 1r5m_A          342 GQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYSLQEGSVV  421 (425)
T ss_dssp             SSEEEEEETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEEESSSCCEEE
T ss_pred             CCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCCceEEEEecCceEEEE
Confidence            8999999999999999999988                    8899999976  99999999999 99999999999999


Q ss_pred             ecC
Q psy12697        549 KLH  551 (602)
Q Consensus       549 ~~~  551 (602)
                      +++
T Consensus       422 ~~~  424 (425)
T 1r5m_A          422 AIP  424 (425)
T ss_dssp             ECC
T ss_pred             eec
Confidence            974

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=1.7e-43  Score=340.30  Aligned_cols=279  Identities=17%  Similarity=0.277  Sum_probs=252.3

Q ss_pred             CCCCceeEEeeCCCCCeEEEEeCCCeEEEEcCC-CcceeecccccCCeEEEEEccCCCEEEEEecCCcEEEEeCCCCc--
Q psy12697        278 PSNKDVTSLDWNNNGSFLATGSYDGYARIWTSD-GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQ--  354 (602)
Q Consensus       278 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~--  354 (602)
                      .|...|.+++|+|++++|++|+.||.|++||.. +.....+..|...|.+++|+|++++|++++.|+.+++||+.+.+  
T Consensus        53 gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~  132 (340)
T 1got_B           53 GHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGN  132 (340)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEETTTCSBS
T ss_pred             CCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEECccCCCc
Confidence            467899999999999999999999999999975 66777788899999999999999999999999999999998763  


Q ss_pred             --eeEEeeeccCCeeeeeccCCCeEEEeeCCCeEEEEEcCCCceeeEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEe
Q psy12697        355 --CEQQFSFHSAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWS  432 (602)
Q Consensus       355 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd  432 (602)
                        ....+..|...+.++.|.+++.+++++.|+.|++||+.+++.+..+.+|...|.+++|+|++++|++|+.|+.|++||
T Consensus       133 ~~~~~~~~~h~~~v~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd  212 (340)
T 1got_B          133 VRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWD  212 (340)
T ss_dssp             CEEEEEEECCSSCEEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred             ceeEEEecCCCccEEEEEECCCCcEEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEE
Confidence              456677899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCeeeEeeccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCC
Q psy12697        433 LDKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASG  512 (602)
Q Consensus       433 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~~~~  512 (602)
                      ++++.++..+..                                  |...|.+++|+|++++|++++.||.|++||+.++
T Consensus       213 ~~~~~~~~~~~~----------------------------------h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~  258 (340)
T 1got_B          213 VREGMCRQTFTG----------------------------------HESDINAICFFPNGNAFATGSDDATCRLFDLRAD  258 (340)
T ss_dssp             TTTCSEEEEECC----------------------------------CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT
T ss_pred             CCCCeeEEEEcC----------------------------------CcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCC
Confidence            998877766654                                  4556677777778899999999999999999998


Q ss_pred             ceeeeecc--cCCCeeEeeecCCc-eEEEeeCCCcEEEeecCCCCceeeeecccccceEEEEecCCcEEEEEECCCCCeE
Q psy12697        513 QCEQQFSF--HSAPALDVDWQSNT-SFASCSTDQHIHVCKLHSDKPVKSFEGHTTGQLVHSYKGTGGIFEVCWNSRGDKV  589 (602)
Q Consensus       513 ~~~~~~~~--~~~~v~~~~~s~~~-~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l  589 (602)
                      +.+..+..  +...|.+++|+|++ .|++|+.|+.|++||+.+++.+..+.+|.           +.|.+++|+|||++|
T Consensus       259 ~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~-----------~~v~~~~~s~dg~~l  327 (340)
T 1got_B          259 QELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHD-----------NRVSCLGVTDDGMAV  327 (340)
T ss_dssp             EEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCS-----------SCEEEEEECTTSSCE
T ss_pred             cEEEEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccCcEeeEeecCC-----------CcEEEEEEcCCCCEE
Confidence            88776653  33479999999999 99999999999999999988888887775           779999999999999


Q ss_pred             EEeccCCeEEee
Q psy12697        590 GASASDGSVFKN  601 (602)
Q Consensus       590 ~~~~~dg~v~i~  601 (602)
                      ++|+.||.|+|+
T Consensus       328 ~s~s~D~~i~iW  339 (340)
T 1got_B          328 ATGSWDSFLKIW  339 (340)
T ss_dssp             EEEETTSCEEEE
T ss_pred             EEEcCCccEEec
Confidence            999999999985

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=1.9e-43  Score=336.55  Aligned_cols=304  Identities=24%  Similarity=0.327  Sum_probs=258.7

Q ss_pred             ceeeeeeeccCCceEEEEECCCC-CeEEEeeCCceEEEEecCCceeEEEeeccCceEEEEeCCCCCCCCCCCCccccccc
Q psy12697        130 GECLNTLTRHTEPVYSVAFSPDG-KFLASGSFDKCVHIWSARTGQLVHSYKGTGGIFEVCWNSRGTPPNPPESMEVDASI  208 (602)
Q Consensus       130 ~~~~~~l~~h~~~V~~~~~s~d~-~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (602)
                      ..+..+|.+|.+.|++++|+|++ ++|+||+.|++|++|++.+......                               
T Consensus         7 ~~l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~-------------------------------   55 (319)
T 3frx_A            7 LVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFG-------------------------------   55 (319)
T ss_dssp             EEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEE-------------------------------
T ss_pred             EEEEEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCcccc-------------------------------
Confidence            45667899999999999999965 8999999999999999865322110                               


Q ss_pred             cccCCcceEeeCCCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEee
Q psy12697        209 EIPQSKATKLIGHESEVFICAWNPVKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDW  288 (602)
Q Consensus       209 ~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  288 (602)
                          .....+.+|...|.+++|+|++++|++++.|++|++||+.+++..     .           ....|...|.+++|
T Consensus        56 ----~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~~~-----~-----------~~~~h~~~v~~~~~  115 (319)
T 3frx_A           56 ----VPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETY-----Q-----------RFVGHKSDVMSVDI  115 (319)
T ss_dssp             ----EEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEE-----E-----------EEECCSSCEEEEEE
T ss_pred             ----ccceEEeCCcccEEEEEECCCCCEEEEEeCCCEEEEEECCCCCee-----E-----------EEccCCCcEEEEEE
Confidence                011567789999999999999999999999999999999876431     1           11245788999999


Q ss_pred             CCCCCeEEEEeCCCeEEEEcCCCcceeecccccCCeEEEEEccC------CCEEEEEecCCcEEEEeCCCCceeEEeeec
Q psy12697        289 NNNGSFLATGSYDGYARIWTSDGSLKSTLGQHKGPIFALKWNKR------GNYILSAGVDKTTIIWDAASGQCEQQFSFH  362 (602)
Q Consensus       289 ~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~i~~~~~~~~------~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~  362 (602)
                      +|++.+|++|+.|+.|++||+++.....+.+|...|.+++|+|.      +..+++++.|+.|++||+++++....+..|
T Consensus       116 ~~~~~~l~s~s~D~~i~vwd~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h  195 (319)
T 3frx_A          116 DKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGH  195 (319)
T ss_dssp             CTTSCEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCC
T ss_pred             cCCCCEEEEEeCCCeEEEEECCCCeEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCC
Confidence            99999999999999999999999989999999999999999985      448999999999999999999999999999


Q ss_pred             cCCeeeeeccCCC-eEEEeeCCCeEEEEEcCCCceeeEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeeeEe
Q psy12697        363 SAPALDVDWQSNT-SFASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHD  441 (602)
Q Consensus       363 ~~~~~~~~~~~~~-~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~  441 (602)
                      ...+.+++|+|++ .+++++.|+.|++||+.+++.+..+.. ...|.+++|+|++.+|++++.++ +++|++.....+..
T Consensus       196 ~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~v~~~~~sp~~~~la~~~~~~-i~v~~~~~~~~~~~  273 (319)
T 3frx_A          196 NSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSA-QDEVFSLAFSPNRYWLAAATATG-IKVFSLDPQYLVDD  273 (319)
T ss_dssp             CSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEEC-CSCEEEEEECSSSSEEEEEETTE-EEEEEETTEEEEEE
T ss_pred             CCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecC-CCcEEEEEEcCCCCEEEEEcCCC-cEEEEeCcCeeeec
Confidence            9999999999985 588999999999999999999888875 46799999999999999988654 99999988766655


Q ss_pred             eccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCC
Q psy12697        442 LQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASG  512 (602)
Q Consensus       442 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~~~~  512 (602)
                      +..+...                          ....|...+.+++|+|||++|++|+.||.|++||+.++
T Consensus       274 ~~~~~~~--------------------------~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~t~  318 (319)
T 3frx_A          274 LRPEFAG--------------------------YSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMTA  318 (319)
T ss_dssp             ECCCCTT--------------------------CCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEEEEEC
T ss_pred             cCccccc--------------------------cccCcCcceeEEEECCCCCEEEEeecCceEEEEEEeec
Confidence            5432110                          12236678899999999999999999999999998764

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=3.9e-43  Score=379.97  Aligned_cols=416  Identities=16%  Similarity=0.196  Sum_probs=341.2

Q ss_pred             CCCcccCCcceeccceeeeecccceeeeeeeccCCceEEEEECCCCCeEEEeeCCceEEEEecCCceeEEEeec-cCceE
Q psy12697        107 TGPAITNGEEVHRLTLPLWDVERGECLNTLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKG-TGGIF  185 (602)
Q Consensus       107 ~~~~~~~~~~~~~~~i~vwd~~~~~~~~~l~~h~~~V~~~~~s~d~~~l~s~~~d~~v~iwd~~~~~~~~~~~~-~~~~~  185 (602)
                      +++.++.+.  .+++|+|||+.+++.+..+.+|...|++++|+|++++|++++.||.|+|||+.+++.+..+.. ...+.
T Consensus        24 ~~~~la~~~--~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~  101 (814)
T 3mkq_A           24 TEPWVLTTL--YSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIR  101 (814)
T ss_dssp             SSSEEEEEE--TTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEE
T ss_pred             CCCEEEEEe--CCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEE
Confidence            344454443  467999999999999999999999999999999999999999999999999999999998885 46689


Q ss_pred             EEEeCCCCCCCCCCCCccccccccccC--CcceEeeCCCcceEEEEEcC-CCCEEEEeeCCCcEEEEeCCCCCCCCCccc
Q psy12697        186 EVCWNSRGTPPNPPESMEVDASIEIPQ--SKATKLIGHESEVFICAWNP-VKDFLASGSGDSTARIWDMTDSTKKDPKEL  262 (602)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~h~~~v~~~~~~~-~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~  262 (602)
                      .++|+|++..+...........+.+..  .....+.+|...|.+++|+| +++.|++++.||.|++||+.++......  
T Consensus       102 ~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~--  179 (814)
T 3mkq_A          102 SIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTL--  179 (814)
T ss_dssp             EEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEE--
T ss_pred             EEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEE--
Confidence            999999998766544443333334332  34567789999999999999 7899999999999999999776542110  


Q ss_pred             eEEEEEEecCCCcccCCCCceeEEeeCC--CCCeEEEEeCCCeEEEEcCC-CcceeecccccCCeEEEEEccCCCEEEEE
Q psy12697        263 QIVLRHCISKGGTEVPSNKDVTSLDWNN--NGSFLATGSYDGYARIWTSD-GSLKSTLGQHKGPIFALKWNKRGNYILSA  339 (602)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~l~~~~~dg~i~i~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~  339 (602)
                                   ...+...+.+++|+|  ++.++++++.||.|++||.. +.....+..|...|.+++|+|++++|+++
T Consensus       180 -------------~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~  246 (814)
T 3mkq_A          180 -------------TTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISG  246 (814)
T ss_dssp             -------------ECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEE
T ss_pred             -------------ecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEE
Confidence                         112347899999999  99999999999999999976 56677788899999999999999999999


Q ss_pred             ecCCcEEEEeCCCCceeEEeeeccCCeeeeeccCCCe--EEEeeCCCeEEEEEcCCCceeeE------------------
Q psy12697        340 GVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTS--FASCSTDQHIHVCKLHSDKPVKS------------------  399 (602)
Q Consensus       340 ~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~i~i~d~~~~~~~~~------------------  399 (602)
                      +.||.|++||+.+++....+..+...+.+++|+|++.  +++++.++.+.+|++....+...                  
T Consensus       247 ~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  326 (814)
T 3mkq_A          247 SEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGNDEPTLSLDPVGKLVWSGGKNAAAS  326 (814)
T ss_dssp             ETTSCEEEEETTTCSEEEEECCSSSSEEEEEECTTCGGGEEEEEETTEEEEEECSCCSCCEEECSSSEEEEECCTTSCTT
T ss_pred             eCCCeEEEEECCCCcEEEEeecCCCcEEEEEEccCCCceEEEEEeCCCEEEEEcCCCCceeEECCCCCEEEECcccccce
Confidence            9999999999999999999999999999999999875  56667788888888765432211                  


Q ss_pred             -------------------------eccCCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeeeEeeccccccEEEEEE
Q psy12697        400 -------------------------FEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHDLQAHNKEIYTIKW  454 (602)
Q Consensus       400 -------------------------~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~  454 (602)
                                               +..+...+.+++|+|+|+++++++ |+.+.+|++......     +.+.+.+++|
T Consensus       327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~-~~~~~i~~~~~~~~~-----~~~~i~~~~~  400 (814)
T 3mkq_A          327 DIFTAVIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAHSPNGRFVTVVG-DGEYVIYTALAWRNK-----AFGKCQDFVW  400 (814)
T ss_dssp             CEEEEECCSCCCCCSSSCBCCCCEEECCCSSCCSEEEECTTSSEEEEEE-TTEEEEEETTTTEEE-----EEEECSEEEE
T ss_pred             eeeeeecccccccccCccceeeeecCCCCccCCceeEECCCCCEEEEec-CCEEEEEECcccccc-----CCCceEEEEE
Confidence                                     123445688999999999999998 899999998754432     2456779999


Q ss_pred             CCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCC---CEEEEEeCCCeEEEEeCCCCceeeeecccCCCeeEeeec
Q psy12697        455 SPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRG---NYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQ  531 (602)
Q Consensus       455 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~---~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s  531 (602)
                      +|++..++.........+...+.+|...+.++.|+|+|   ++|++++.|+.|++||+.+++.+..+..|..   .++|+
T Consensus       401 spdg~~la~~~~~g~v~l~~~~~~~~~~v~~~~~s~dg~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~---~v~~s  477 (814)
T 3mkq_A          401 GPDSNSYALIDETGQIKYYKNFKEVTSWSVPMHSAIDRLFSGALLGVKSDGFVYFFDWDNGTLVRRIDVNAK---DVIWS  477 (814)
T ss_dssp             CTTSSCEEEECTTCCEEEEETTEECTTCCCCCSSCCCEEECSSSEEEEETTEEEEECTTTCCEEEEESSCEE---EEEEC
T ss_pred             eCCCCeEEEEeCCCcEEEEECCCCccceEEcCCcCccceecceEEEEecCCEEEEEECCcCcEEEEEecCCC---EEEEc
Confidence            99999877666555444456778899999999999998   6899999999999999999999999987764   89999


Q ss_pred             CCc-eEEEe------eCCCcEEEe
Q psy12697        532 SNT-SFASC------STDQHIHVC  548 (602)
Q Consensus       532 ~~~-~l~~~------~~d~~i~iw  548 (602)
                      ||| +++++      +.++.+.+|
T Consensus       478 ~dg~~la~~~~~~~~~~~~~~~~~  501 (814)
T 3mkq_A          478 DNGELVMIVNTNSNGDEASGYTLL  501 (814)
T ss_dssp             TTSSEEEEEECCCSSCSCSEEEEE
T ss_pred             CCCCEEEEEEcCcccCCceEEEEE
Confidence            999 88888      555544444

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=2e-43  Score=338.32  Aligned_cols=238  Identities=17%  Similarity=0.268  Sum_probs=202.7

Q ss_pred             CCceeEEeeCCCCCeEEEEeCCCeEEEEcCC-Cccee----ecccccCCeEEEEEccCCCEEEEEecCCcEEEEeCCCCc
Q psy12697        280 NKDVTSLDWNNNGSFLATGSYDGYARIWTSD-GSLKS----TLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQ  354 (602)
Q Consensus       280 ~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~-~~~~~----~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~  354 (602)
                      ...|.+++|+|++ .|++|+.||.|++||++ ++...    ...+|...|.+++|+|++++|++++.|++|++||+++++
T Consensus        82 ~~~v~~~~~s~d~-~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~  160 (344)
T 4gqb_B           82 EAGVADLTWVGER-GILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQV  160 (344)
T ss_dssp             SSCEEEEEEETTT-EEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE
T ss_pred             CCCEEEEEEeCCC-eEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCc
Confidence            4679999999985 68899999999999986 33322    345799999999999999999999999999999999999


Q ss_pred             eeEEeeeccCCeeeeeccCCC--eEEEeeCCCeEEEEEcCCCceeeEec--cCCCCeEEEEECC-CCCEEEEEECCCeEE
Q psy12697        355 CEQQFSFHSAPALDVDWQSNT--SFASCSTDQHIHVCKLHSDKPVKSFE--GHTNEVNAIKWDP-QGLLLASCSDDMTLK  429 (602)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~i~i~d~~~~~~~~~~~--~~~~~i~~~~~~~-~~~~l~~~~~dg~i~  429 (602)
                      ++..+..|...|.++.|++++  .+++++.|+.|++||++++++...+.  .|...+.+++|+| ++++|++|+.||.|+
T Consensus       161 ~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~  240 (344)
T 4gqb_B          161 VLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVS  240 (344)
T ss_dssp             EEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEE
T ss_pred             EEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEE
Confidence            999999999999999999874  58899999999999999999887764  4556799999999 567899999999999


Q ss_pred             EEeCCCCeeeEeeccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCC-CEEEEEeCCCeEEEEe
Q psy12697        430 IWSLDKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRG-NYILSAGVDKTTIIWD  508 (602)
Q Consensus       430 iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~-~~l~s~~~dg~i~iwd  508 (602)
                      +||+++++++.++..|...                                  |++++|+|++ ++|++|+.|++|+|||
T Consensus       241 ~wd~~~~~~~~~~~~h~~~----------------------------------v~~v~fsp~g~~~lasgs~D~~i~vwd  286 (344)
T 4gqb_B          241 LVDTKSTSCVLSSAVHSQC----------------------------------VTGLVFSPHSVPFLASLSEDCSLAVLD  286 (344)
T ss_dssp             EEESCC--CCEEEECCSSC----------------------------------EEEEEECSSSSCCEEEEETTSCEEEEC
T ss_pred             EEECCCCcEEEEEcCCCCC----------------------------------EEEEEEccCCCeEEEEEeCCCeEEEEE
Confidence            9999999888877765554                                  5555555565 5799999999999999


Q ss_pred             CCCCceeeeecccCCCeeEeeecCCc--eEEEeeCCCcEEEeecCCC
Q psy12697        509 AASGQCEQQFSFHSAPALDVDWQSNT--SFASCSTDQHIHVCKLHSD  553 (602)
Q Consensus       509 ~~~~~~~~~~~~~~~~v~~~~~s~~~--~l~~~~~d~~i~iw~~~~~  553 (602)
                      +.+++++ .+.+|.+.|++++|+|++  .|++++.|++|++|++.+.
T Consensus       287 ~~~~~~~-~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~~  332 (344)
T 4gqb_B          287 SSLSELF-RSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPTE  332 (344)
T ss_dssp             TTCCEEE-EECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECCC-
T ss_pred             CCCCcEE-EEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCCC
Confidence            9988765 567899999999999998  5678999999999998764

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=2.5e-42  Score=328.58  Aligned_cols=295  Identities=31%  Similarity=0.528  Sum_probs=251.5

Q ss_pred             ceeeeeeeccCCceEEEEECCCCCeEEEeeCCceEEEEecCCceeEEEeeccCceEEEEeCCCCCCCCCCCCcccccccc
Q psy12697        130 GECLNTLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKGTGGIFEVCWNSRGTPPNPPESMEVDASIE  209 (602)
Q Consensus       130 ~~~~~~l~~h~~~V~~~~~s~d~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (602)
                      .....++.+|.+.|++++|+|++++|++++.|+.|++|++.+++...                                 
T Consensus        13 ~~~~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~---------------------------------   59 (312)
T 4ery_A           13 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEK---------------------------------   59 (312)
T ss_dssp             CEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEE---------------------------------
T ss_pred             ceeEEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccch---------------------------------
Confidence            45667889999999999999999999999999999999999887663                                 


Q ss_pred             ccCCcceEeeCCCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEeeC
Q psy12697        210 IPQSKATKLIGHESEVFICAWNPVKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWN  289 (602)
Q Consensus       210 ~~~~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  289 (602)
                             .+.+|...|.+++|+|++++|++++.|+.|++||+.+++..     ..           ...|...|.+++|+
T Consensus        60 -------~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~-----~~-----------~~~~~~~v~~~~~~  116 (312)
T 4ery_A           60 -------TISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCL-----KT-----------LKGHSNYVFCCNFN  116 (312)
T ss_dssp             -------EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEE-----EE-----------EECCSSCEEEEEEC
T ss_pred             -------hhccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCCCcEE-----EE-----------EcCCCCCEEEEEEc
Confidence                   44579999999999999999999999999999999876432     11           12356789999999


Q ss_pred             CCCCeEEEEeCCCeEEEEcCC-CcceeecccccCCeEEEEEccCCCEEEEEecCCcEEEEeCCCCceeEEeeeccCCeee
Q psy12697        290 NNGSFLATGSYDGYARIWTSD-GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALD  368 (602)
Q Consensus       290 ~~~~~l~~~~~dg~i~i~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~  368 (602)
                      |++++|++|+.||.|++||+. +.....+..|..+|.+++|+|++++|++++.||.|++||+++++.+..+.        
T Consensus       117 ~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~--------  188 (312)
T 4ery_A          117 PQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLI--------  188 (312)
T ss_dssp             SSSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEEC--------
T ss_pred             CCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEEe--------
Confidence            999999999999999999987 56677888999999999999999999999999999999998765543221        


Q ss_pred             eeccCCCeEEEeeCCCeEEEEEcCCCceeeEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeeeEeecccccc
Q psy12697        369 VDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHDLQAHNKE  448 (602)
Q Consensus       369 ~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~  448 (602)
                                                      ..+...+..++|+|++++|++++.||.|++||+++++.+..+..|...
T Consensus       189 --------------------------------~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~  236 (312)
T 4ery_A          189 --------------------------------DDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNE  236 (312)
T ss_dssp             --------------------------------CSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCS
T ss_pred             --------------------------------ccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCc
Confidence                                            224556889999999999999999999999999999888877665432


Q ss_pred             EEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeeecccCCCeeEe
Q psy12697        449 IYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDV  528 (602)
Q Consensus       449 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~  528 (602)
                      ..                               .+......+++++|++|+.||.|++||+.+++.+..+.+|...|.++
T Consensus       237 ~~-------------------------------~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~  285 (312)
T 4ery_A          237 KY-------------------------------CIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVIST  285 (312)
T ss_dssp             SS-------------------------------CCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEECCCSSCEEEE
T ss_pred             eE-------------------------------EEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhhhccCCcEEEE
Confidence            11                               11222233578899999999999999999999999999999999999


Q ss_pred             eecCCc-eEEEee--CCCcEEEeecC
Q psy12697        529 DWQSNT-SFASCS--TDQHIHVCKLH  551 (602)
Q Consensus       529 ~~s~~~-~l~~~~--~d~~i~iw~~~  551 (602)
                      +|+|++ .+++++  .|+.|++|+.+
T Consensus       286 ~~~p~~~~l~s~~~~~d~~i~~W~~d  311 (312)
T 4ery_A          286 ACHPTENIIASAALENDKTIKLWKSD  311 (312)
T ss_dssp             EECSSSSEEEEEECTTTCCEEEEECC
T ss_pred             eecCcCCceEEEEccCCccEEEecCC
Confidence            999999 888886  69999999853

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=2.8e-42  Score=332.62  Aligned_cols=323  Identities=17%  Similarity=0.272  Sum_probs=276.5

Q ss_pred             cCCceEEEEECCCCCeEEEeeCCceEEEEecCCceeEEEeeccCceEEEEeCCCCCCCCCCCCccccccccccCCcceEe
Q psy12697        139 HTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKGTGGIFEVCWNSRGTPPNPPESMEVDASIEIPQSKATKL  218 (602)
Q Consensus       139 h~~~V~~~~~s~d~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  218 (602)
                      |.++|.+++|+|||++++++..++.+.+|+.......                                        ...
T Consensus         8 ~~~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~~----------------------------------------~~~   47 (337)
T 1gxr_A            8 GSKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQ----------------------------------------INT   47 (337)
T ss_dssp             EEEECCEEEECSSSCEEECCCCTTSSSSTTCCSEEEE----------------------------------------EEE
T ss_pred             cCCceeEEEECCCCCEEEeecCCCcEeccccCCcccc----------------------------------------cee
Confidence            5678999999999999999988777777655443322                                        233


Q ss_pred             eCCCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEeeCCCCCeEEEE
Q psy12697        219 IGHESEVFICAWNPVKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFLATG  298 (602)
Q Consensus       219 ~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~  298 (602)
                      .+|...|.+++|+|++++|++++ ||.|++|++.++.........           ....+...|.+++|+|++++++++
T Consensus        48 ~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~-----------~~~~~~~~v~~~~~~~~~~~l~~~  115 (337)
T 1gxr_A           48 LNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQL-----------DCLNRDNYIRSCKLLPDGCTLIVG  115 (337)
T ss_dssp             ECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEE-----------ECSCTTSBEEEEEECTTSSEEEEE
T ss_pred             ccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCceeeeecc-----------cccCCCCcEEEEEEcCCCCEEEEE
Confidence            47999999999999999999999 999999999876543222111           011356889999999999999999


Q ss_pred             eCCCeEEEEcCCCc---ceeecccccCCeEEEEEccCCCEEEEEecCCcEEEEeCCCCceeEEeeeccCCeeeeeccCCC
Q psy12697        299 SYDGYARIWTSDGS---LKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNT  375 (602)
Q Consensus       299 ~~dg~i~i~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~  375 (602)
                      +.||.|++|+....   ....+..|...|.+++|+|+++++++++.||.|++||+++++....+..+...+.++.|+|++
T Consensus       116 ~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~  195 (337)
T 1gxr_A          116 GEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDG  195 (337)
T ss_dssp             ESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTS
T ss_pred             cCCCcEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCC
Confidence            99999999998743   455677899999999999999999999999999999999999999999999999999999875


Q ss_pred             -eEEEeeCCCeEEEEEcCCCceeeEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeeeEeeccccccEEEEEE
Q psy12697        376 -SFASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHDLQAHNKEIYTIKW  454 (602)
Q Consensus       376 -~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~  454 (602)
                       .+++++.|+.|++||+++++.+..+. +...+.+++|+|++++|++++.|+.|++||+++++.. .+            
T Consensus       196 ~~l~~~~~dg~i~~~d~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~-~~------------  261 (337)
T 1gxr_A          196 TKLWTGGLDNTVRSWDLREGRQLQQHD-FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKY-QL------------  261 (337)
T ss_dssp             SEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEE-EE------------
T ss_pred             CEEEEEecCCcEEEEECCCCceEeeec-CCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeE-EE------------
Confidence             68889999999999999998887765 7788999999999999999999999999999876532 22            


Q ss_pred             CCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeeecccCCCeeEeeecCCc
Q psy12697        455 SPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNT  534 (602)
Q Consensus       455 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~  534 (602)
                                            ..|...|.+++|+|++++|++++.||.|++||+.+++.+... .|...+.+++|+|++
T Consensus       262 ----------------------~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~  318 (337)
T 1gxr_A          262 ----------------------HLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS-KESSSVLSCDISVDD  318 (337)
T ss_dssp             ----------------------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE-ECSSCEEEEEECTTS
T ss_pred             ----------------------cCCccceeEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEe-cCCCcEEEEEECCCC
Confidence                                  236677888888889999999999999999999999888554 488899999999999


Q ss_pred             -eEEEeeCCCcEEEeec
Q psy12697        535 -SFASCSTDQHIHVCKL  550 (602)
Q Consensus       535 -~l~~~~~d~~i~iw~~  550 (602)
                       .|++++.||.|++|++
T Consensus       319 ~~l~~~~~dg~i~iw~~  335 (337)
T 1gxr_A          319 KYIVTGSGDKKATVYEV  335 (337)
T ss_dssp             CEEEEEETTSCEEEEEE
T ss_pred             CEEEEecCCCeEEEEEE
Confidence             9999999999999996

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.3e-44  Score=356.83  Aligned_cols=330  Identities=16%  Similarity=0.295  Sum_probs=274.0

Q ss_pred             CCceEEEEECCCCC-eEEEe----------eCCceEEEEecCCceeEEEeeccCceEEEEeCCCCCCCCCCCCccccccc
Q psy12697        140 TEPVYSVAFSPDGK-FLASG----------SFDKCVHIWSARTGQLVHSYKGTGGIFEVCWNSRGTPPNPPESMEVDASI  208 (602)
Q Consensus       140 ~~~V~~~~~s~d~~-~l~s~----------~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (602)
                      ...|.+++|+|+++ +|+++          +.|+.|+|||+.+++....                               
T Consensus        12 ~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~-------------------------------   60 (416)
T 2pm9_A           12 FSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKP-------------------------------   60 (416)
T ss_dssp             EEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSC-------------------------------
T ss_pred             hhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcE-------------------------------
Confidence            34688999999997 99999          8999999999988753210                               


Q ss_pred             cccCCcceEeeCCCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEee
Q psy12697        209 EIPQSKATKLIGHESEVFICAWNPVKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDW  288 (602)
Q Consensus       209 ~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  288 (602)
                             .....|...|.+++|+|++++|++++.||.|++|++........ ...           ....|...|.+++|
T Consensus        61 -------~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~-~~~-----------~~~~h~~~v~~~~~  121 (416)
T 2pm9_A           61 -------IASLQVDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAIN-SMA-----------RFSNHSSSVKTVKF  121 (416)
T ss_dssp             -------SCCCCCSSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTSCCC-EEE-----------ECCCSSSCCCEEEE
T ss_pred             -------EEEEecCCceEEEEECCCCCeEEEEccCCeEEEeeccccccccc-chh-----------hccCCccceEEEEE
Confidence                   11235888999999999999999999999999999987322110 000           12245788999999


Q ss_pred             CCC-CCeEEEEeCCCeEEEEcCCCcc-------e---eecccccCCeEEEEEccC-CCEEEEEecCCcEEEEeCCCCcee
Q psy12697        289 NNN-GSFLATGSYDGYARIWTSDGSL-------K---STLGQHKGPIFALKWNKR-GNYILSAGVDKTTIIWDAASGQCE  356 (602)
Q Consensus       289 ~~~-~~~l~~~~~dg~i~i~~~~~~~-------~---~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~i~~wd~~~~~~~  356 (602)
                      +|+ +++|++++.||.|++||+....       .   .....|...|.+++|+|+ +.+|++++.||.|++||+++++..
T Consensus       122 ~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~  201 (416)
T 2pm9_A          122 NAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEV  201 (416)
T ss_dssp             CSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEE
T ss_pred             cCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcc
Confidence            998 8999999999999999987432       1   223578999999999999 789999999999999999999998


Q ss_pred             EEeeec------cCCeeeeeccCCC--eEEEeeCCC---eEEEEEcCCC-ceeeEec-cCCCCeEEEEECC-CCCEEEEE
Q psy12697        357 QQFSFH------SAPALDVDWQSNT--SFASCSTDQ---HIHVCKLHSD-KPVKSFE-GHTNEVNAIKWDP-QGLLLASC  422 (602)
Q Consensus       357 ~~~~~~------~~~~~~~~~~~~~--~~~~~~~~~---~i~i~d~~~~-~~~~~~~-~~~~~i~~~~~~~-~~~~l~~~  422 (602)
                      ..+..+      ...+.+++|+|++  .+++++.++   .|++||++++ +++..+. +|...|.+++|+| ++++|+++
T Consensus       202 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~  281 (416)
T 2pm9_A          202 IHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSS  281 (416)
T ss_dssp             EEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEE
T ss_pred             eEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEE
Confidence            888876      7889999999985  688999998   9999999986 6777888 8999999999999 99999999


Q ss_pred             ECCCeEEEEeCCCCeeeEeeccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCC-CEEEEEeCC
Q psy12697        423 SDDMTLKIWSLDKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRG-NYILSAGVD  501 (602)
Q Consensus       423 ~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~-~~l~s~~~d  501 (602)
                      +.||.|++||+++++.+..+..                                  |...|.+++|+|++ ++|++++.|
T Consensus       282 ~~dg~v~~wd~~~~~~~~~~~~----------------------------------~~~~v~~~~~s~~~~~~l~s~~~d  327 (416)
T 2pm9_A          282 GRDNTVLLWNPESAEQLSQFPA----------------------------------RGNWCFKTKFAPEAPDLFACASFD  327 (416)
T ss_dssp             ESSSEEEEECSSSCCEEEEEEC----------------------------------SSSCCCCEEECTTCTTEEEECCSS
T ss_pred             eCCCCEEEeeCCCCccceeecC----------------------------------CCCceEEEEECCCCCCEEEEEecC
Confidence            9999999999999888777665                                  44556667777777 799999999


Q ss_pred             CeEEEEeCCCCceeeeecc-----------------------------------cCCCeeEeeecCCc-eEEEeeCCCcE
Q psy12697        502 KTTIIWDAASGQCEQQFSF-----------------------------------HSAPALDVDWQSNT-SFASCSTDQHI  545 (602)
Q Consensus       502 g~i~iwd~~~~~~~~~~~~-----------------------------------~~~~v~~~~~s~~~-~l~~~~~d~~i  545 (602)
                      |.|++||+.++........                                   |..++.+++|+|+| +|++++.|+.|
T Consensus       328 ~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~la~~~~d~~v  407 (416)
T 2pm9_A          328 NKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAFGGKLVQITPDGKGV  407 (416)
T ss_dssp             SEEEEEESCCCCCSSCC----------------------CCSCCCSSCCCCCSTTCCCSCCCEEETTTEEECBCTTSSCB
T ss_pred             CcEEEEEccCCCCCcccccccccccCCcccccccccccccccccccccccCCccccCCccceEEeeCCeEEEEeCCCCeE
Confidence            9999999987764433211                                   56778899999999 99999999999


Q ss_pred             EEeecCCC
Q psy12697        546 HVCKLHSD  553 (602)
Q Consensus       546 ~iw~~~~~  553 (602)
                      +||++.+.
T Consensus       408 ~~w~~~~~  415 (416)
T 2pm9_A          408 SITNPKIS  415 (416)
T ss_dssp             CCBCCCCC
T ss_pred             EEEEeccC
Confidence            99998653

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=1.7e-42  Score=330.00  Aligned_cols=289  Identities=21%  Similarity=0.354  Sum_probs=248.0

Q ss_pred             eEeeCCCcceEEEEEcCCC-CEEEEeeCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEeeCCCCCe
Q psy12697        216 TKLIGHESEVFICAWNPVK-DFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSF  294 (602)
Q Consensus       216 ~~l~~h~~~v~~~~~~~~~-~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  294 (602)
                      ..+.+|.+.|.+++|+|++ ++|++++.|++|++|++.......    ....       .....|...|.+++|+|++++
T Consensus        11 ~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~----~~~~-------~~~~~h~~~v~~~~~s~dg~~   79 (319)
T 3frx_A           11 GTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKF----GVPV-------RSFKGHSHIVQDCTLTADGAY   79 (319)
T ss_dssp             EEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEE----EEEE-------EEEECCSSCEEEEEECTTSSE
T ss_pred             EEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccc----cccc-------eEEeCCcccEEEEEECCCCCE
Confidence            5678999999999999965 899999999999999986543211    0000       012346789999999999999


Q ss_pred             EEEEeCCCeEEEEcCC-CcceeecccccCCeEEEEEccCCCEEEEEecCCcEEEEeCCCCceeEEeeeccCCeeeeeccC
Q psy12697        295 LATGSYDGYARIWTSD-GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQS  373 (602)
Q Consensus       295 l~~~~~dg~i~i~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~  373 (602)
                      |++|+.|+.|++||+. ++....+.+|...|.+++|+|++++|++++.|++|++||++ +.++..+..|...+.++.+.|
T Consensus        80 l~s~s~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~-~~~~~~~~~h~~~v~~~~~~~  158 (319)
T 3frx_A           80 ALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVP  158 (319)
T ss_dssp             EEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETT-SCEEEEECCCSSCEEEEEECC
T ss_pred             EEEEeCCCEEEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC-CCeEEEEeccCCcEEEEEEcc
Confidence            9999999999999986 66777888999999999999999999999999999999996 567778888999999999988


Q ss_pred             CC-------eEEEeeCCCeEEEEEcCCCceeeEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeeeEeecccc
Q psy12697        374 NT-------SFASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHDLQAHN  446 (602)
Q Consensus       374 ~~-------~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~  446 (602)
                      ..       .+++++.|+.|++||+++.+....+.+|...|.+++|+|++++|++++.||.|++||+.+++.+..+..  
T Consensus       159 ~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~--  236 (319)
T 3frx_A          159 NEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSA--  236 (319)
T ss_dssp             C------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEEC--
T ss_pred             CCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecC--
Confidence            53       589999999999999999999999999999999999999999999999999999999999887776643  


Q ss_pred             ccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeeec-------
Q psy12697        447 KEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFS-------  519 (602)
Q Consensus       447 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-------  519 (602)
                                                       ...|.+++|+|++.+|++++.++ +++|++..+..+..+.       
T Consensus       237 ---------------------------------~~~v~~~~~sp~~~~la~~~~~~-i~v~~~~~~~~~~~~~~~~~~~~  282 (319)
T 3frx_A          237 ---------------------------------QDEVFSLAFSPNRYWLAAATATG-IKVFSLDPQYLVDDLRPEFAGYS  282 (319)
T ss_dssp             ---------------------------------CSCEEEEEECSSSSEEEEEETTE-EEEEEETTEEEEEEECCCCTTCC
T ss_pred             ---------------------------------CCcEEEEEEcCCCCEEEEEcCCC-cEEEEeCcCeeeeccCccccccc
Confidence                                             23567778888888998887655 9999999877666553       


Q ss_pred             -ccCCCeeEeeecCCc-eEEEeeCCCcEEEeecCC
Q psy12697        520 -FHSAPALDVDWQSNT-SFASCSTDQHIHVCKLHS  552 (602)
Q Consensus       520 -~~~~~v~~~~~s~~~-~l~~~~~d~~i~iw~~~~  552 (602)
                       .|...+.+++|+||| +|++|+.||.|++||+.+
T Consensus       283 ~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~t  317 (319)
T 3frx_A          283 KAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMT  317 (319)
T ss_dssp             GGGCCCEEEEEECTTSSEEEEEETTSCEEEEEEEE
T ss_pred             cCcCcceeEEEECCCCCEEEEeecCceEEEEEEee
Confidence             346679999999999 999999999999999754

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=2.1e-42  Score=333.28  Aligned_cols=305  Identities=20%  Similarity=0.245  Sum_probs=233.9

Q ss_pred             ceeeeeeeccCCceEEEEE-----CC-CCCeEEEeeCCceEEEEecCCceeEEEeeccCceEEEEeCCCCCCCCCCCCcc
Q psy12697        130 GECLNTLTRHTEPVYSVAF-----SP-DGKFLASGSFDKCVHIWSARTGQLVHSYKGTGGIFEVCWNSRGTPPNPPESME  203 (602)
Q Consensus       130 ~~~~~~l~~h~~~V~~~~~-----s~-d~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (602)
                      .++...|.+|.+.|++++|     ++ |+++|+||+.|++|+|||+.+++....                          
T Consensus        11 ~~~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~--------------------------   64 (343)
T 2xzm_R           11 VVKRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGY--------------------------   64 (343)
T ss_dssp             EEEEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSB--------------------------
T ss_pred             eeeeeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccc--------------------------
Confidence            3567789999999999999     77 999999999999999999876432100                          


Q ss_pred             ccccccccCCcceEeeCCCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCce
Q psy12697        204 VDASIEIPQSKATKLIGHESEVFICAWNPVKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDV  283 (602)
Q Consensus       204 ~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  283 (602)
                             .......+.+|...|.+++|+|++.++++++.|++|++||+.++...     .           ....|...|
T Consensus        65 -------~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~-----~-----------~~~~h~~~v  121 (343)
T 2xzm_R           65 -------FGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTY-----K-----------RFVGHQSEV  121 (343)
T ss_dssp             -------SEEEEEEECCCSSCEEEEEECSSTTEEEEEETTSEEEEEETTSSCEE-----E-----------EEECCCSCE
T ss_pred             -------cccccchhccCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCcEE-----E-----------EEcCCCCcE
Confidence                   00012457789999999999999999999999999999999876431     1           112357889


Q ss_pred             eEEeeCCCCCeEEEEeCCCeEEEEcCCCcceeecc---cccCCeEEEEEccCCCEEEEEecCCcEEEEeCCCCceeEEee
Q psy12697        284 TSLDWNNNGSFLATGSYDGYARIWTSDGSLKSTLG---QHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFS  360 (602)
Q Consensus       284 ~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~---~~~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~  360 (602)
                      .+++|+|++++|++++.|+.|++||+.+.......   .|...|.+++|+|++....                       
T Consensus       122 ~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-----------------------  178 (343)
T 2xzm_R          122 YSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSPIMKSAN-----------------------  178 (343)
T ss_dssp             EEEEECSSTTEEEEEETTSCEEEEESSSCEEEECCTTTSCSSCEEEEEECCCCCSCS-----------------------
T ss_pred             EEEEECCCCCEEEEEcCCCEEEEEeccCCceeeeecccCCCceeeeeeecccccccc-----------------------
Confidence            99999999999999999999999998865554443   7888999999999862100                       


Q ss_pred             eccCCeeeeeccC-CCeEEEeeCCCeEEEEEcCCCceeeEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCe-e
Q psy12697        361 FHSAPALDVDWQS-NTSFASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDN-C  438 (602)
Q Consensus       361 ~~~~~~~~~~~~~-~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~  438 (602)
                               ...+ ...+++++.|+.|++|| ...+....+.+|...|.+++|+|+|++|++|+.||.|++||+.... .
T Consensus       179 ---------~~~~~~~~l~s~~~d~~i~iwd-~~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~  248 (343)
T 2xzm_R          179 ---------KVQPFAPYFASVGWDGRLKVWN-TNFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYP  248 (343)
T ss_dssp             ---------CCCSSCCEEEEEETTSEEEEEE-TTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCSSC
T ss_pred             ---------ccCCCCCEEEEEcCCCEEEEEc-CCCceeEEEcCccccceEEEECCCCCEEEEEcCCCeEEEEECCCCccc
Confidence                     0001 12345555555555555 2334456677899999999999999999999999999999985432 2


Q ss_pred             eEeeccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCceee--
Q psy12697        439 VHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQ--  516 (602)
Q Consensus       439 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~--  516 (602)
                      ...+.                                   +...|.+++|+|++++++++ .|+.|++||+.+++...  
T Consensus       249 ~~~~~-----------------------------------~~~~v~~v~~sp~~~~la~~-~d~~v~iw~~~~~~~~~~~  292 (343)
T 2xzm_R          249 QREFD-----------------------------------AGSTINQIAFNPKLQWVAVG-TDQGVKIFNLMTQSKAPVC  292 (343)
T ss_dssp             SEEEE-----------------------------------CSSCEEEEEECSSSCEEEEE-ESSCEEEEESSSCCSCSEE
T ss_pred             ceeec-----------------------------------CCCcEEEEEECCCCCEEEEE-CCCCEEEEEeCCCCCCceE
Confidence            21111                                   23457788888888877655 57889999998876543  


Q ss_pred             eec-----------ccCCCeeEeeecCCc-eEEEeeCCCcEEEeecCC
Q psy12697        517 QFS-----------FHSAPALDVDWQSNT-SFASCSTDQHIHVCKLHS  552 (602)
Q Consensus       517 ~~~-----------~~~~~v~~~~~s~~~-~l~~~~~d~~i~iw~~~~  552 (602)
                      .+.           +|...|.+++|+|++ .|++|+.||.|++|++++
T Consensus       293 ~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~~  340 (343)
T 2xzm_R          293 TIEAEPITKAEGQKGKNPQCTSLAWNALGKKLFAGFTDGVIRTFSFET  340 (343)
T ss_dssp             ECCCCSGGGBTTBCCSCCCEEEEEECSSSCCEEEEETTSEEEEEEEEE
T ss_pred             EeecCcchhhhhhcCCCCceEEEEECCCCCeEEEecCCceEEEEEEEc
Confidence            333           678889999999999 999999999999999754

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=2.5e-42  Score=339.03  Aligned_cols=321  Identities=24%  Similarity=0.378  Sum_probs=245.1

Q ss_pred             eccCCceEEEEECCCCCeEEEeeCCceEEEEecCCceeEEEeeccCceEEEEeCCCCCCCCCCCCccccccccccCCcce
Q psy12697        137 TRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKGTGGIFEVCWNSRGTPPNPPESMEVDASIEIPQSKAT  216 (602)
Q Consensus       137 ~~h~~~V~~~~~s~d~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  216 (602)
                      .+|...|.+++|||||++||+|+ +++++||++.+++.+..+........   .+                   ......
T Consensus        61 ~~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~---~~-------------------~~~~~~  117 (393)
T 1erj_A           61 LDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANK---DP-------------------ENLNTS  117 (393)
T ss_dssp             EECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC------------------------------------
T ss_pred             cCCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCcccccc---cc-------------------cccccc
Confidence            36999999999999999999986 78999999999998876653221000   00                   000001


Q ss_pred             EeeCCCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEeeCCCCCeEE
Q psy12697        217 KLIGHESEVFICAWNPVKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFLA  296 (602)
Q Consensus       217 ~l~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~  296 (602)
                      ....+...|.+++|+|++++|++++.|+.|++||+.+++..     .           ....|...|.+++|+|++++|+
T Consensus       118 ~~~~~~~~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~~~-----~-----------~~~~h~~~v~~~~~~p~~~~l~  181 (393)
T 1erj_A          118 SSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIV-----M-----------ILQGHEQDIYSLDYFPSGDKLV  181 (393)
T ss_dssp             ---CCCCBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEE-----E-----------EECCCSSCEEEEEECTTSSEEE
T ss_pred             ccCCCceeEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEE-----E-----------EEccCCCCEEEEEEcCCCCEEE
Confidence            11234556999999999999999999999999999865421     0           1124578899999999999999


Q ss_pred             EEeCCCeEEEEcCCCcceeecccccCCeEEEEEcc-CCCEEEEEecCCcEEEEeCCCCceeEEeeeccCCeeeeeccCCC
Q psy12697        297 TGSYDGYARIWTSDGSLKSTLGQHKGPIFALKWNK-RGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNT  375 (602)
Q Consensus       297 ~~~~dg~i~i~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~  375 (602)
                      +++.|+.|++||+..........+...+.+++|+| ++++|++++.|+.|++||+++++.+..+...             
T Consensus       182 s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~-------------  248 (393)
T 1erj_A          182 SGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSE-------------  248 (393)
T ss_dssp             EEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC---------------
T ss_pred             EecCCCcEEEEECCCCeeEEEEEcCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeeccc-------------
Confidence            99999999999987544333334677899999999 8999999999999999999988765543211             


Q ss_pred             eEEEeeCCCeEEEEEcCCCceeeEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeeeEeeccccccEEEEEEC
Q psy12697        376 SFASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHDLQAHNKEIYTIKWS  455 (602)
Q Consensus       376 ~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~  455 (602)
                                           .....+|...|.+++|+|++++|++|+.|+.|++||+++............        
T Consensus       249 ---------------------~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~--------  299 (393)
T 1erj_A          249 ---------------------NESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNS--------  299 (393)
T ss_dssp             -------------------------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC----------------------
T ss_pred             ---------------------ccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCCC--------
Confidence                                 112346889999999999999999999999999999986543322111000        


Q ss_pred             CCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeeecccCCCeeEeeecC---
Q psy12697        456 PTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQS---  532 (602)
Q Consensus       456 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~---  532 (602)
                                    ..+...+.+|...|.+++|+|++++|++|+.|+.|++||+.+++++..+.+|...|.+++|++   
T Consensus       300 --------------~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~~v~~v~~~~~~~  365 (393)
T 1erj_A          300 --------------GTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSS  365 (393)
T ss_dssp             ---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCT
T ss_pred             --------------CcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCCCCEEEEEecCCcC
Confidence                          011223457889999999999999999999999999999999999999999999999999876   


Q ss_pred             ---Cc-eEEEeeCCCcEEEeecCC
Q psy12697        533 ---NT-SFASCSTDQHIHVCKLHS  552 (602)
Q Consensus       533 ---~~-~l~~~~~d~~i~iw~~~~  552 (602)
                         ++ .|++|+.||.|++|++..
T Consensus       366 ~~p~~~~l~sgs~Dg~i~iW~~~~  389 (393)
T 1erj_A          366 LGPEYNVFATGSGDCKARIWKYKK  389 (393)
T ss_dssp             TCTTCEEEEEEETTSEEEEEEEEE
T ss_pred             cCCCCCEEEEECCCCcEEECcccc
Confidence               67 899999999999999753

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=1.4e-41  Score=328.37  Aligned_cols=279  Identities=17%  Similarity=0.267  Sum_probs=247.8

Q ss_pred             CCCCceeEEeeCCCCCeEEEEeCCCeEEEEcCC-CcceeecccccCCeEEEEEccCCCEEEEEecCCcEEEEeCCCC---
Q psy12697        278 PSNKDVTSLDWNNNGSFLATGSYDGYARIWTSD-GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASG---  353 (602)
Q Consensus       278 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~~---  353 (602)
                      .|...|.+++|+|++++|++|+.||.|++||.. +.....+..|...|.+++|+|+++++++++.|+.+++|++...   
T Consensus        62 gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~~~~~~~  141 (354)
T 2pbi_B           62 GHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNE  141 (354)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEECCCCTTC
T ss_pred             CCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEEEeccccc
Confidence            467889999999999999999999999999965 5666777788899999999999999999999999999998654   


Q ss_pred             ---ceeEEeeeccCCeeeeeccCCC-eEEEeeCCCeEEEEEcCCCceeeEeccCCCCeEEEEECC--CCCEEEEEECCCe
Q psy12697        354 ---QCEQQFSFHSAPALDVDWQSNT-SFASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDP--QGLLLASCSDDMT  427 (602)
Q Consensus       354 ---~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~--~~~~l~~~~~dg~  427 (602)
                         .....+..|...+.++.|++++ .+++++.|+.|++||+.+++.+..+.+|...|.+++|+|  ++++|++|+.||.
T Consensus       142 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~  221 (354)
T 2pbi_B          142 NMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKK  221 (354)
T ss_dssp             CSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEEEEEETTSC
T ss_pred             cccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCe
Confidence               3455677899999999999885 699999999999999999999999999999999999988  5789999999999


Q ss_pred             EEEEeCCCCeeeEeeccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCCCeEEEE
Q psy12697        428 LKIWSLDKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIW  507 (602)
Q Consensus       428 i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iw  507 (602)
                      |++||+++++++..+..                                  |...|.+++|+|++++|++++.|++|++|
T Consensus       222 v~~wd~~~~~~~~~~~~----------------------------------h~~~v~~v~~~p~~~~l~s~s~D~~v~lw  267 (354)
T 2pbi_B          222 AMVWDMRSGQCVQAFET----------------------------------HESDVNSVRYYPSGDAFASGSDDATCRLY  267 (354)
T ss_dssp             EEEEETTTCCEEEEECC----------------------------------CSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred             EEEEECCCCcEEEEecC----------------------------------CCCCeEEEEEeCCCCEEEEEeCCCeEEEE
Confidence            99999999888776655                                  45566667777788999999999999999


Q ss_pred             eCCCCceeeeeccc--CCCeeEeeecCCc-eEEEeeCCCcEEEeecCCCCceeeeecccccceEEEEecCCcEEEEEECC
Q psy12697        508 DAASGQCEQQFSFH--SAPALDVDWQSNT-SFASCSTDQHIHVCKLHSDKPVKSFEGHTTGQLVHSYKGTGGIFEVCWNS  584 (602)
Q Consensus       508 d~~~~~~~~~~~~~--~~~v~~~~~s~~~-~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp  584 (602)
                      |+.+++.+..+..+  ...+.+++|+|++ .|++++.|+.|++||+.+++.+..+.+|.           +.|.+++|+|
T Consensus       268 d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~-----------~~v~~l~~sp  336 (354)
T 2pbi_B          268 DLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHE-----------NRVSTLRVSP  336 (354)
T ss_dssp             ETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCS-----------SCEEEEEECT
T ss_pred             ECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEECCC-----------CcEEEEEECC
Confidence            99988877766543  3478999999999 99999999999999999988888777775           7799999999


Q ss_pred             CCCeEEEeccCCeEEee
Q psy12697        585 RGDKVGASASDGSVFKN  601 (602)
Q Consensus       585 dg~~l~~~~~dg~v~i~  601 (602)
                      ||++|++++.||+|+|+
T Consensus       337 dg~~l~sgs~D~~v~vW  353 (354)
T 2pbi_B          337 DGTAFCSGSWDHTLRVW  353 (354)
T ss_dssp             TSSCEEEEETTSEEEEE
T ss_pred             CCCEEEEEcCCCCEEec
Confidence            99999999999999985

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.6e-41  Score=324.94  Aligned_cols=307  Identities=24%  Similarity=0.422  Sum_probs=237.2

Q ss_pred             cceeeeeeeccCCceEEEEECCCCCeEEEeeCCceEEEEecCCceeEEEeeccCceEEEEeCCCCCCCCCCCCccccccc
Q psy12697        129 RGECLNTLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKGTGGIFEVCWNSRGTPPNPPESMEVDASI  208 (602)
Q Consensus       129 ~~~~~~~l~~h~~~V~~~~~s~d~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (602)
                      +.++++++.+|.++|.+++|+|+  +||+|+.|++|++||+.++.....                               
T Consensus         3 ~~~~~~~~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~-------------------------------   49 (330)
T 2hes_X            3 SINLIKSLKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLI-------------------------------   49 (330)
T ss_dssp             CCEEEEEEECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEE-------------------------------
T ss_pred             ccccceeeccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEE-------------------------------
Confidence            45678899999999999999998  999999999999999987532110                               


Q ss_pred             cccCCcceEe-eC-CCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEE
Q psy12697        209 EIPQSKATKL-IG-HESEVFICAWNPVKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSL  286 (602)
Q Consensus       209 ~~~~~~~~~l-~~-h~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  286 (602)
                             ..+ .+ |...|.+++|+|++++|++++.|++|++|++......                       .     
T Consensus        50 -------~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~-----------------------~-----   94 (330)
T 2hes_X           50 -------DVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADR-----------------------T-----   94 (330)
T ss_dssp             -------EEECTTCCCSCEEEEEECTTSSEEEEEETTSCEEEEEC-----------------------------------
T ss_pred             -------EEEecCCccCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCc-----------------------c-----
Confidence                   122 23 9999999999999999999999999999998532100                       0     


Q ss_pred             eeCCCCCeEEEEeCCCeEEEEcCCCcceeecccccCCeEEEEEccCCCEEEEEecCCcEEEEeCCCC----ceeEEeeec
Q psy12697        287 DWNNNGSFLATGSYDGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASG----QCEQQFSFH  362 (602)
Q Consensus       287 ~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~~----~~~~~~~~~  362 (602)
                                            ........+.+|...|.+++|+|++++|++++.|++|++||++..    +++..+..|
T Consensus        95 ----------------------~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h  152 (330)
T 2hes_X           95 ----------------------FEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEH  152 (330)
T ss_dssp             ----------------------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCC
T ss_pred             ----------------------ccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccC
Confidence                                  011233456679999999999999999999999999999999432    456778889


Q ss_pred             cCCeeeeeccCCC-eEEEeeCCCeEEEEEcCCC--ceeeEeccCCCCeEEEEECCC--CCEEEEEECCCeEEEEeCCCCe
Q psy12697        363 SAPALDVDWQSNT-SFASCSTDQHIHVCKLHSD--KPVKSFEGHTNEVNAIKWDPQ--GLLLASCSDDMTLKIWSLDKDN  437 (602)
Q Consensus       363 ~~~~~~~~~~~~~-~~~~~~~~~~i~i~d~~~~--~~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~dg~i~iwd~~~~~  437 (602)
                      ...+.++.|+|++ .+++++.|+.|++||..++  +++..+.+|...|.+++|+|+  +.+|++++.|++|++||++.+.
T Consensus       153 ~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~  232 (330)
T 2hes_X          153 SQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDD  232 (330)
T ss_dssp             SSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEEC
T ss_pred             CCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCC
Confidence            9999999999975 6889999999999999876  678889999999999999998  7799999999999999986432


Q ss_pred             eeEeeccccccEEEEEECCCCCCCCCCCcceeeeeeeccC-CccCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCc--e
Q psy12697        438 CVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLG-QHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQ--C  514 (602)
Q Consensus       438 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~~~~~--~  514 (602)
                      ..     ..                     ........+. .|...|.+++|++++ +|++++.||.|++||..+++  .
T Consensus       233 ~~-----~~---------------------~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~  285 (330)
T 2hes_X          233 ED-----DQ---------------------QEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKV  285 (330)
T ss_dssp             TT-----SC---------------------EEEEEEEECCSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEE
T ss_pred             cc-----cc---------------------ceeEEeeecccccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEE
Confidence            10     00                     0001111222 377889999999665 89999999999999998774  3


Q ss_pred             ee-eecccCC-CeeEeeecC--Cc-eEEEeeCCCcEEEeecCC
Q psy12697        515 EQ-QFSFHSA-PALDVDWQS--NT-SFASCSTDQHIHVCKLHS  552 (602)
Q Consensus       515 ~~-~~~~~~~-~v~~~~~s~--~~-~l~~~~~d~~i~iw~~~~  552 (602)
                      .. ...+|.. .|.+++|+|  ++ .|++++.||.|++|+++.
T Consensus       286 ~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~~  328 (330)
T 2hes_X          286 FAKRALCHGVYEINVVKWLELNGKTILATGGDDGIVNFWSLEK  328 (330)
T ss_dssp             EEEESCTTTTSCEEEEEEC-----CCEEEEETTSEEEEEEC--
T ss_pred             EeccccccccceEEEEEEecCCCceEEEEecCCCcEEEEEecc
Confidence            32 3456877 899999999  67 899999999999999753

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=2.8e-42  Score=333.34  Aligned_cols=307  Identities=16%  Similarity=0.234  Sum_probs=230.6

Q ss_pred             EEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEeeCCCCCeEEEEeC------CC
Q psy12697        229 AWNPVKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFLATGSY------DG  302 (602)
Q Consensus       229 ~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~------dg  302 (602)
                      .+.+++.+ +.++.+.....|++.....                    ..|...|++++|+|||++|++|+.      |+
T Consensus        12 d~g~~~~~-~~~~g~~~~~~w~~p~~~p--------------------~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~   70 (357)
T 4g56_B           12 DLGTENLY-FQSNGSSKGSAWGRPVTAP--------------------ACMEVQIGAVRYRRDGALLLAASSLSSRTWGG   70 (357)
T ss_dssp             -------------------------------------------------CCCSEEEEEEECSSSCEEEEEECSSSSSCCE
T ss_pred             CCCccceE-EecCCCccccccCCCCCCc--------------------ccccCCEEEEEECCCCCEEEEEcCCCCccccC
Confidence            33444433 4445567778888753321                    235788999999999999999997      78


Q ss_pred             eEEEEcCCC-----cceeecccccCCeEEEEEccCCCEEEEEecCCcEEEEeCCCCceeE----EeeeccCCeeeeeccC
Q psy12697        303 YARIWTSDG-----SLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQ----QFSFHSAPALDVDWQS  373 (602)
Q Consensus       303 ~i~i~~~~~-----~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~----~~~~~~~~~~~~~~~~  373 (602)
                      .|++|+...     ........|...|.+++|+|++. +++++.||+|++||+.+++...    ....|...|.+++|+|
T Consensus        71 ~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~-~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~sp  149 (357)
T 4g56_B           71 SIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKG-ILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFS  149 (357)
T ss_dssp             EEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTE-EEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECS
T ss_pred             eEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCC-EEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECC
Confidence            899998652     22333456888999999999975 6677889999999999886543    2346788999999999


Q ss_pred             CC-eEEEeeCCCeEEEEEcCCCceeeEeccCCCCeEEEEECCCCC-EEEEEECCCeEEEEeCCCCeeeEeeccccccEEE
Q psy12697        374 NT-SFASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGL-LLASCSDDMTLKIWSLDKDNCVHDLQAHNKEIYT  451 (602)
Q Consensus       374 ~~-~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~  451 (602)
                      ++ .+++++.|+.|++||+.+++.+..+.+|...|.+++|+|++. ++++++.||.|++||++++++...+..       
T Consensus       150 dg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~-------  222 (357)
T 4g56_B          150 DGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDF-------  222 (357)
T ss_dssp             SSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCC-------
T ss_pred             CCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeee-------
Confidence            85 588999999999999999999999999999999999999875 789999999999999998776554432       


Q ss_pred             EEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccC-CCEEEEEeCCCeEEEEeCCCCceeeeecccCCCeeEeee
Q psy12697        452 IKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKR-GNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDW  530 (602)
Q Consensus       452 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~  530 (602)
                                               ..+...+.+++|+|+ +.+|++|+.|+.|++||+.+++++..+.+|...|++++|
T Consensus       223 -------------------------~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~  277 (357)
T 4g56_B          223 -------------------------CASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQNITGLAY  277 (357)
T ss_dssp             -------------------------TTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECCCSSCEEEEEE
T ss_pred             -------------------------ccccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEeccceeEEEEEE
Confidence                                     124556777777776 568999999999999999999999999999999999999


Q ss_pred             cCCc--eEEEeeCCCcEEEeecCCCCceeeeecccccceEEEEecCCcEEEEEECC-CCCeEEEeccCCeEEee
Q psy12697        531 QSNT--SFASCSTDQHIHVCKLHSDKPVKSFEGHTTGQLVHSYKGTGGIFEVCWNS-RGDKVGASASDGSVFKN  601 (602)
Q Consensus       531 s~~~--~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp-dg~~l~~~~~dg~v~i~  601 (602)
                      +|++  +|++++.|++|+|||+++++.+..+ +|           .+.|++++|+| |+++|++++.||+|+++
T Consensus       278 sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~-~H-----------~~~V~~vafsP~d~~~l~s~s~Dg~v~iW  339 (357)
T 4g56_B          278 SYHSSPFLASISEDCTVAVLDADFSEVFRDL-SH-----------RDFVTGVAWSPLDHSKFTTVGWDHKVLHH  339 (357)
T ss_dssp             CSSSSCCEEEEETTSCEEEECTTSCEEEEEC-CC-----------SSCEEEEEECSSSTTEEEEEETTSCEEEE
T ss_pred             cCCCCCEEEEEeCCCEEEEEECCCCcEeEEC-CC-----------CCCEEEEEEeCCCCCEEEEEcCCCeEEEE
Confidence            9987  6899999999999999877655443 33           47899999999 89999999999999885

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.5e-43  Score=349.49  Aligned_cols=334  Identities=19%  Similarity=0.366  Sum_probs=273.8

Q ss_pred             CCcceEEEEEcCCCC-EEEEe----------eCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEeeC
Q psy12697        221 HESEVFICAWNPVKD-FLASG----------SGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWN  289 (602)
Q Consensus       221 h~~~v~~~~~~~~~~-~l~s~----------~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  289 (602)
                      +...|.+++|+|+++ +|+++          +.|+.|++||+.++......              ....+...|.+++|+
T Consensus        11 ~~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~--------------~~~~~~~~v~~~~~s   76 (416)
T 2pm9_A           11 EFSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPI--------------ASLQVDSKFNDLDWS   76 (416)
T ss_dssp             EEEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCS--------------CCCCCSSCEEEEEEC
T ss_pred             hhhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEE--------------EEEecCCceEEEEEC
Confidence            445788999999986 99999          88999999999876532110              112356889999999


Q ss_pred             CCCCeEEEEeCCCeEEEEcCCC-----cceeecccccCCeEEEEEccC-CCEEEEEecCCcEEEEeCCCCc------eeE
Q psy12697        290 NNGSFLATGSYDGYARIWTSDG-----SLKSTLGQHKGPIFALKWNKR-GNYILSAGVDKTTIIWDAASGQ------CEQ  357 (602)
Q Consensus       290 ~~~~~l~~~~~dg~i~i~~~~~-----~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~i~~wd~~~~~------~~~  357 (602)
                      |++++|++++.||.|++|++..     .....+..|...|.+++|+|+ +++|++++.||.|++||+.+++      ...
T Consensus        77 ~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~  156 (416)
T 2pm9_A           77 HNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPL  156 (416)
T ss_dssp             SSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCB
T ss_pred             CCCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCcccccccccc
Confidence            9999999999999999999875     467788899999999999998 8999999999999999999886      333


Q ss_pred             E---eeeccCCeeeeeccCC--CeEEEeeCCCeEEEEEcCCCceeeEeccC------CCCeEEEEECCCC-CEEEEEECC
Q psy12697        358 Q---FSFHSAPALDVDWQSN--TSFASCSTDQHIHVCKLHSDKPVKSFEGH------TNEVNAIKWDPQG-LLLASCSDD  425 (602)
Q Consensus       358 ~---~~~~~~~~~~~~~~~~--~~~~~~~~~~~i~i~d~~~~~~~~~~~~~------~~~i~~~~~~~~~-~~l~~~~~d  425 (602)
                      .   ...+...+.++.|+++  ..+++++.|+.|++||+++++.+..+..+      ...|.+++|+|++ .+|++++.|
T Consensus       157 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d  236 (416)
T 2pm9_A          157 TPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGS  236 (416)
T ss_dssp             CCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECC
T ss_pred             ccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECC
Confidence            2   3567889999999997  56889999999999999999998888876      7889999999997 689999999


Q ss_pred             C---eEEEEeCCCC-eeeEeeccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEcc-CCCEEEEEeC
Q psy12697        426 M---TLKIWSLDKD-NCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNK-RGNYILSAGV  500 (602)
Q Consensus       426 g---~i~iwd~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~-~~~~l~s~~~  500 (602)
                      +   .|++||++++ .++..+.                                 .+|...|.+++|+| ++++|++++.
T Consensus       237 ~~~~~i~~~d~~~~~~~~~~~~---------------------------------~~~~~~v~~~~~s~~~~~~l~s~~~  283 (416)
T 2pm9_A          237 DNDPSILIWDLRNANTPLQTLN---------------------------------QGHQKGILSLDWCHQDEHLLLSSGR  283 (416)
T ss_dssp             SSSCCCCEEETTSTTSCSBCCC---------------------------------SCCSSCEEEEEECSSCSSCEEEEES
T ss_pred             CCCceEEEEeCCCCCCCcEEee---------------------------------cCccCceeEEEeCCCCCCeEEEEeC
Confidence            8   9999999875 3333333                                 03666777788888 8899999999


Q ss_pred             CCeEEEEeCCCCceeeeecccCCCeeEeeecCCc--eEEEeeCCCcEEEeecCCCCceeeeec---ccccceEE------
Q psy12697        501 DKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNT--SFASCSTDQHIHVCKLHSDKPVKSFEG---HTTGQLVH------  569 (602)
Q Consensus       501 dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~--~l~~~~~d~~i~iw~~~~~~~~~~~~~---~~~~~~~~------  569 (602)
                      ||.|++||+.+++++..+..|...|.+++|+|++  .|++++.|+.|++|++.+.........   ........      
T Consensus       284 dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  363 (416)
T 2pm9_A          284 DNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVS  363 (416)
T ss_dssp             SSEEEEECSSSCCEEEEEECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSSCC-------------------
T ss_pred             CCCEEEeeCCCCccceeecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCcccccccccccCCccccccccc
Confidence            9999999999999999999999999999999997  899999999999999988765433221   00000000      


Q ss_pred             --------------EEe-cCCcEEEEEECCCCCeEEEeccCCeEEee
Q psy12697        570 --------------SYK-GTGGIFEVCWNSRGDKVGASASDGSVFKN  601 (602)
Q Consensus       570 --------------~~~-~~~~i~~l~~spdg~~l~~~~~dg~v~i~  601 (602)
                                    ... ...++.+++|+|||++|++++.||.|+|+
T Consensus       364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~la~~~~d~~v~~w  410 (416)
T 2pm9_A          364 REESKEKPSVFHLQAPTWYGEPSPAAHWAFGGKLVQITPDGKGVSIT  410 (416)
T ss_dssp             ---CCSCCCSSCCCCCSTTCCCSCCCEEETTTEEECBCTTSSCBCCB
T ss_pred             ccccccccccccccCCccccCCccceEEeeCCeEEEEeCCCCeEEEE
Confidence                          000 23567789999999999999999999874

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=7.8e-42  Score=327.19  Aligned_cols=277  Identities=17%  Similarity=0.231  Sum_probs=227.9

Q ss_pred             CCCceeEEeeCCCCCeEEEEeCCCeEEEEcCC------------CcceeecccccCCeEEEEEccCCCEEEEEecCCcEE
Q psy12697        279 SNKDVTSLDWNNNGSFLATGSYDGYARIWTSD------------GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTI  346 (602)
Q Consensus       279 ~~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~------------~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~  346 (602)
                      +...|.+++|+|||++|++++ |+.+++||..            .........+...|.+++|+|++ .|++++.||+|+
T Consensus        29 ~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~l~~~s~dg~v~  106 (344)
T 4gqb_B           29 MERQLEAARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGER-GILVASDSGAVE  106 (344)
T ss_dssp             CCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTT-EEEEEETTSEEE
T ss_pred             ccCCEEEEEECCCCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCC-eEEEEECCCEEE
Confidence            356799999999999998877 6667777621            11112223466789999999985 688999999999


Q ss_pred             EEeCCCCceeEEe----eeccCCeeeeeccCCC-eEEEeeCCCeEEEEEcCCCceeeEeccCCCCeEEEEECCCCC-EEE
Q psy12697        347 IWDAASGQCEQQF----SFHSAPALDVDWQSNT-SFASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGL-LLA  420 (602)
Q Consensus       347 ~wd~~~~~~~~~~----~~~~~~~~~~~~~~~~-~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~  420 (602)
                      +||+.+++.....    ..|...|.+++|+|++ .+++++.|+.|++||+.+++.+..+.+|...|.+++|+|++. +|+
T Consensus       107 lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~  186 (344)
T 4gqb_B          107 LWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFL  186 (344)
T ss_dssp             EEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSSCTTEEE
T ss_pred             EEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCceEEEEecCCCCCcee
Confidence            9999998765543    4688999999999985 588999999999999999999999999999999999999884 789


Q ss_pred             EEECCCeEEEEeCCCCeeeEeeccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEcc-CCCEEEEEe
Q psy12697        421 SCSDDMTLKIWSLDKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNK-RGNYILSAG  499 (602)
Q Consensus       421 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~-~~~~l~s~~  499 (602)
                      +++.|+.|++||+++++....+..+                                .+...+.+++|+| ++++|++|+
T Consensus       187 s~s~D~~v~iwd~~~~~~~~~~~~~--------------------------------~~~~~~~~~~~~p~~~~~l~sg~  234 (344)
T 4gqb_B          187 SCSEDNRILLWDTRCPKPASQIGCS--------------------------------APGYLPTSLAWHPQQSEVFVFGD  234 (344)
T ss_dssp             EEETTSCEEEEETTSSSCEEECC------------------------------------CCCEEEEEECSSCTTEEEEEE
T ss_pred             eeccccccccccccccceeeeeecc--------------------------------eeeccceeeeecCCCCcceEEec
Confidence            9999999999999998877765422                                1334566677776 457899999


Q ss_pred             CCCeEEEEeCCCCceeeeecccCCCeeEeeecCCc--eEEEeeCCCcEEEeecCCCCceeeeecccccceEEEEecCCcE
Q psy12697        500 VDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNT--SFASCSTDQHIHVCKLHSDKPVKSFEGHTTGQLVHSYKGTGGI  577 (602)
Q Consensus       500 ~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~--~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  577 (602)
                      .||.|++||+++++++..+.+|...|++++|+|++  +|++|+.|++|+|||+.+++.+ .+.+|.           +.|
T Consensus       235 ~dg~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~-~~~~H~-----------~~V  302 (344)
T 4gqb_B          235 ENGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELF-RSQAHR-----------DFV  302 (344)
T ss_dssp             TTSEEEEEESCC--CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEE-EECCCS-----------SCE
T ss_pred             cCCcEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEE-EEcCCC-----------CCE
Confidence            99999999999999999999999999999999998  6899999999999999877543 344454           789


Q ss_pred             EEEEECCCCC-eEEEeccCCeEEee
Q psy12697        578 FEVCWNSRGD-KVGASASDGSVFKN  601 (602)
Q Consensus       578 ~~l~~spdg~-~l~~~~~dg~v~i~  601 (602)
                      ++++|+|+++ +|++++.||+|+++
T Consensus       303 ~~v~~sp~~~~llas~s~D~~v~~w  327 (344)
T 4gqb_B          303 RDATWSPLNHSLLTTVGWDHQVVHH  327 (344)
T ss_dssp             EEEEECSSSTTEEEEEETTSCEEEE
T ss_pred             EEEEEeCCCCeEEEEEcCCCeEEEE
Confidence            9999999987 56789999999875

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=1.1e-41  Score=328.08  Aligned_cols=296  Identities=26%  Similarity=0.470  Sum_probs=236.1

Q ss_pred             eEeeCCCc-ceEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEeeCCCCCe
Q psy12697        216 TKLIGHES-EVFICAWNPVKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSF  294 (602)
Q Consensus       216 ~~l~~h~~-~v~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  294 (602)
                      ..+.+|.. .|++++|+|++++|++++.|++|++||+.++...        ....     ....|...|.+++|+|++++
T Consensus         9 ~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~--------~~~~-----~~~~h~~~v~~~~~sp~g~~   75 (345)
T 3fm0_A            9 GRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWI--------CKSV-----LSEGHQRTVRKVAWSPCGNY   75 (345)
T ss_dssp             EEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEE--------EEEE-----ECSSCSSCEEEEEECTTSSE
T ss_pred             eeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcce--------eeee-----eccccCCcEEEEEECCCCCE
Confidence            56778988 9999999999999999999999999998765311        0000     11246788999999999999


Q ss_pred             EEEEeCCCeEEEEcCCCc---ceeecccccCCeEEEEEccCCCEEEEEecCCcEEEEeCCCCceeEEeeeccCCeeeeec
Q psy12697        295 LATGSYDGYARIWTSDGS---LKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDW  371 (602)
Q Consensus       295 l~~~~~dg~i~i~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~  371 (602)
                      |++|+.|+.+++|+....   ....+.+|...|.+++|+|++++|++++.|+.|++||+.++...               
T Consensus        76 l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~---------------  140 (345)
T 3fm0_A           76 LASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEY---------------  140 (345)
T ss_dssp             EEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCE---------------
T ss_pred             EEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCe---------------
Confidence            999999999999997643   45678899999999999999999999999999999998754321               


Q ss_pred             cCCCeEEEeeCCCeEEEEEcCCCceeeEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeeeEeeccccccEEE
Q psy12697        372 QSNTSFASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHDLQAHNKEIYT  451 (602)
Q Consensus       372 ~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~  451 (602)
                                             +.+..+.+|...|.+++|+|++++|++++.|+.|++||.++++....          
T Consensus       141 -----------------------~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~----------  187 (345)
T 3fm0_A          141 -----------------------ECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCC----------  187 (345)
T ss_dssp             -----------------------EEEEEECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEEEEE----------
T ss_pred             -----------------------EEEEEecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEE----------
Confidence                                   12345567889999999999999999999999999999876542211          


Q ss_pred             EEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCC---------------ceee
Q psy12697        452 IKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASG---------------QCEQ  516 (602)
Q Consensus       452 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~~~~---------------~~~~  516 (602)
                                            ..+.+|...|.+++|+|+|++|++++.|++|++||....               +++.
T Consensus       188 ----------------------~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~  245 (345)
T 3fm0_A          188 ----------------------ATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCIC  245 (345)
T ss_dssp             ----------------------EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEE
T ss_pred             ----------------------EEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeE
Confidence                                  123357778888888889999999999999999996322               2344


Q ss_pred             eecc-cCCCeeEeeecCCc-eEEEeeCCCcEEEeecCCCCc----eeeeecccccceEEEE-ecCCcEEEEEECCCC-Ce
Q psy12697        517 QFSF-HSAPALDVDWQSNT-SFASCSTDQHIHVCKLHSDKP----VKSFEGHTTGQLVHSY-KGTGGIFEVCWNSRG-DK  588 (602)
Q Consensus       517 ~~~~-~~~~v~~~~~s~~~-~l~~~~~d~~i~iw~~~~~~~----~~~~~~~~~~~~~~~~-~~~~~i~~l~~spdg-~~  588 (602)
                      .+.+ |...|.+++|+|++ .|++++.|+.|++|+......    ...+..+       .. .+...|.+++|+|++ .+
T Consensus       246 ~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~-------~~~~h~~~V~~v~~~p~~~~~  318 (345)
T 3fm0_A          246 TLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAH-------LHQAHSQDVNCVAWNPKEPGL  318 (345)
T ss_dssp             EECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEE-------ETTSSSSCEEEEEECSSSTTE
T ss_pred             EecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEee-------ecccccCcEeEeEEeCCCceE
Confidence            4444 88899999999999 999999999999999876532    1111110       11 124779999999998 49


Q ss_pred             EEEeccCCeEEee
Q psy12697        589 VGASASDGSVFKN  601 (602)
Q Consensus       589 l~~~~~dg~v~i~  601 (602)
                      ||+|+.||+|+++
T Consensus       319 laS~s~Dg~v~~W  331 (345)
T 3fm0_A          319 LASCSDDGEVAFW  331 (345)
T ss_dssp             EEEEETTSCEEEE
T ss_pred             EEEcCCCCcEEEE
Confidence            9999999999985

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=3.6e-41  Score=325.21  Aligned_cols=309  Identities=22%  Similarity=0.341  Sum_probs=254.9

Q ss_pred             cccceeeeeeeccCCceEEEEECCC-CCeEEEeeCCceEEEEecCCceeEEEeeccCceEEEEeCCCCCCCCCCCCcccc
Q psy12697        127 VERGECLNTLTRHTEPVYSVAFSPD-GKFLASGSFDKCVHIWSARTGQLVHSYKGTGGIFEVCWNSRGTPPNPPESMEVD  205 (602)
Q Consensus       127 ~~~~~~~~~l~~h~~~V~~~~~s~d-~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (602)
                      .++.++..+|+||++.|++++|+|+ +++||||+.|++|+|||+.+++.....                           
T Consensus        25 ~~~~~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~---------------------------   77 (340)
T 4aow_A           25 TEQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGI---------------------------   77 (340)
T ss_dssp             -CEEEEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEE---------------------------
T ss_pred             CCceEEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccce---------------------------
Confidence            3455677899999999999999997 689999999999999999875432111                           


Q ss_pred             ccccccCCcceEeeCCCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeE
Q psy12697        206 ASIEIPQSKATKLIGHESEVFICAWNPVKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTS  285 (602)
Q Consensus       206 ~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  285 (602)
                              ....+.+|...|.+++|+|++++|++++.|+.|++|+........                ....+...+..
T Consensus        78 --------~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~~~~~----------------~~~~~~~~~~~  133 (340)
T 4aow_A           78 --------PQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTR----------------RFVGHTKDVLS  133 (340)
T ss_dssp             --------EEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE----------------EEECCSSCEEE
T ss_pred             --------eeEEEeCCCCCEEEEEECCCCCEEEEEcccccceEEeecccceee----------------eecCCCCceeE
Confidence                    115577899999999999999999999999999999987653211                11123567889


Q ss_pred             EeeCCCCCeEEEEeCCCeEEEEcCCCcc--eeecccccCCeEEEEEccCC--CEEEEEecCCcEEEEeCCCCceeEEeee
Q psy12697        286 LDWNNNGSFLATGSYDGYARIWTSDGSL--KSTLGQHKGPIFALKWNKRG--NYILSAGVDKTTIIWDAASGQCEQQFSF  361 (602)
Q Consensus       286 ~~~~~~~~~l~~~~~dg~i~i~~~~~~~--~~~~~~~~~~i~~~~~~~~~--~~l~~~~~dg~i~~wd~~~~~~~~~~~~  361 (602)
                      +.+++++.+|++++.|+.+++||.....  ......|...+..++|++++  .++++++.|+.|++||+++++....+..
T Consensus       134 ~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~  213 (340)
T 4aow_A          134 VAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIG  213 (340)
T ss_dssp             EEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECC
T ss_pred             EEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecC
Confidence            9999999999999999999999987543  34456789999999998865  5688999999999999999999999999


Q ss_pred             ccCCeeeeeccCCC-eEEEeeCCCeEEEEEcCCCceeeEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeeeE
Q psy12697        362 HSAPALDVDWQSNT-SFASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVH  440 (602)
Q Consensus       362 ~~~~~~~~~~~~~~-~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~  440 (602)
                      |...+.+++|+|++ .+++++.|+.|++||+++.+++..+..+ ..|.+++|+|++.++ +++.|+.|++||++++..+.
T Consensus       214 h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~-~~v~~~~~~~~~~~~-~~~~d~~i~iwd~~~~~~~~  291 (340)
T 4aow_A          214 HTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGG-DIINALCFSPNRYWL-CAATGPSIKIWDLEGKIIVD  291 (340)
T ss_dssp             CSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECS-SCEEEEEECSSSSEE-EEEETTEEEEEETTTTEEEE
T ss_pred             CCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecCC-ceEEeeecCCCCcee-eccCCCEEEEEECCCCeEEE
Confidence            99999999999975 5888999999999999999998888754 679999999987654 56678999999999988777


Q ss_pred             eeccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCc
Q psy12697        441 DLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQ  513 (602)
Q Consensus       441 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~~~~~  513 (602)
                      .+..+...                         .....|...|++++|+|+|++|++|+.||.|+|||+++|.
T Consensus       292 ~~~~~~~~-------------------------~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~tGt  339 (340)
T 4aow_A          292 ELKQEVIS-------------------------TSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIGT  339 (340)
T ss_dssp             EECCC--------------------------------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEEC--
T ss_pred             ecccccee-------------------------eeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCcC
Confidence            76543211                         1234588999999999999999999999999999999885

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=8.9e-41  Score=334.61  Aligned_cols=329  Identities=22%  Similarity=0.416  Sum_probs=281.9

Q ss_pred             eecccceeeeeeeccCCceEEEEECCCCCeEEEeeCCceEEEEecCCceeEEEeeccCceEEEEeCCCCCCCCCCCCccc
Q psy12697        125 WDVERGECLNTLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKGTGGIFEVCWNSRGTPPNPPESMEV  204 (602)
Q Consensus       125 wd~~~~~~~~~l~~h~~~V~~~~~s~d~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  204 (602)
                      |.....+....+.+|.+.|.. +++++|++|++|+.||+|++||+.+++.+.                            
T Consensus       103 w~~~~~~~~~~l~~h~~~v~~-~~~~~g~~l~sg~~dg~i~vwd~~~~~~~~----------------------------  153 (445)
T 2ovr_B          103 WRRGELKSPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLR----------------------------  153 (445)
T ss_dssp             HHHSCCCCCEEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEE----------------------------
T ss_pred             ccCCCcceeEEecccCCCcEE-EEEEcCCEEEEEECCCcEEEEECCCCcEEE----------------------------
Confidence            444444566789999987643 355579999999999999999999998774                            


Q ss_pred             cccccccCCcceEeeCCCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCcee
Q psy12697        205 DASIEIPQSKATKLIGHESEVFICAWNPVKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVT  284 (602)
Q Consensus       205 ~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  284 (602)
                                  .+.+|...|.+++|+  ++++++++.||+|++||+.+++...                ....|...|.
T Consensus       154 ------------~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~~~~~----------------~~~~h~~~v~  203 (445)
T 2ovr_B          154 ------------TLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAETGECIH----------------TLYGHTSTVR  203 (445)
T ss_dssp             ------------ECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTTEEEE----------------EECCCSSCEE
T ss_pred             ------------EEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEECCcCcEEE----------------EECCCCCcEE
Confidence                        345799999999998  6799999999999999998764211                1123568899


Q ss_pred             EEeeCCCCCeEEEEeCCCeEEEEcCC-CcceeecccccCCeEEEEEccCCCEEEEEecCCcEEEEeCCCCceeEEeeecc
Q psy12697        285 SLDWNNNGSFLATGSYDGYARIWTSD-GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHS  363 (602)
Q Consensus       285 ~~~~~~~~~~l~~~~~dg~i~i~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~  363 (602)
                      +++|+  ++.+++|+.||.|++||+. +.....+..|...|.+++|  +++++++++.||.|++||+++++.+..+..|.
T Consensus       204 ~~~~~--~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~  279 (445)
T 2ovr_B          204 CMHLH--EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHTLQGHT  279 (445)
T ss_dssp             EEEEE--TTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE--CSSCEEEEETTSCEEEEEGGGTEEEEEECCCS
T ss_pred             EEEec--CCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE--CCCEEEEEcCCCEEEEEECCCCcEeEEecCCC
Confidence            99995  5689999999999999986 6677788899999999999  68899999999999999999999999999999


Q ss_pred             CCeeeeeccCCCeEEEeeCCCeEEEEEcCCCceeeEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeeeEeec
Q psy12697        364 APALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHDLQ  443 (602)
Q Consensus       364 ~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  443 (602)
                      ..+.++.| .+..+++++.|+.|++||+.+++.+..+.+|...+.++.++  +++|++++.||.|++||+++++.+..+.
T Consensus       280 ~~v~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~vwd~~~~~~~~~~~  356 (445)
T 2ovr_B          280 NRVYSLQF-DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELK--DNILVSGNADSTVKIWDIKTGQCLQTLQ  356 (445)
T ss_dssp             SCEEEEEE-CSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEEC
T ss_pred             CceEEEEE-CCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcccEEEEEEe--CCEEEEEeCCCeEEEEECCCCcEEEEEc
Confidence            99999999 66789999999999999999999999999999999988875  6699999999999999999988887776


Q ss_pred             cccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeee-----
Q psy12697        444 AHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQF-----  518 (602)
Q Consensus       444 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-----  518 (602)
                      .+.                               .|...|.+++|+  +++|++++.||.|++||+.+++.+..+     
T Consensus       357 ~~~-------------------------------~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~  403 (445)
T 2ovr_B          357 GPN-------------------------------KHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRNLVTLES  403 (445)
T ss_dssp             STT-------------------------------SCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEEECTT
T ss_pred             cCC-------------------------------CCCCCEEEEEEC--CCEEEEEeCCCeEEEEECCCCceeeeeecccc
Confidence            421                               255666667664  578999999999999999999998888     


Q ss_pred             cccCCCeeEeeecCCc-eEEEeeCCCc----EEEeecCC
Q psy12697        519 SFHSAPALDVDWQSNT-SFASCSTDQH----IHVCKLHS  552 (602)
Q Consensus       519 ~~~~~~v~~~~~s~~~-~l~~~~~d~~----i~iw~~~~  552 (602)
                      ..|.+.|.+++|+|++ .+++++.||.    |.+||++.
T Consensus       404 ~~~~~~v~~~~~s~~~~~la~~~~dg~~~~~l~v~df~~  442 (445)
T 2ovr_B          404 GGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDV  442 (445)
T ss_dssp             GGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCC
T ss_pred             CCCCceEEEEEecCCEEEEEEcccCCCCccEEEEEECCC
Confidence            4688899999999999 8999999998    99999864

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=1.1e-40  Score=317.24  Aligned_cols=280  Identities=26%  Similarity=0.486  Sum_probs=251.1

Q ss_pred             CCCCceeEEeeCCCCCeEEEEeCCCeEEEEcCC-CcceeecccccCCeEEEEEccCCCEEEEEecCCcEEEEeCCCCcee
Q psy12697        278 PSNKDVTSLDWNNNGSFLATGSYDGYARIWTSD-GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCE  356 (602)
Q Consensus       278 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~  356 (602)
                      .|...|++++|+|++++|++++.||.|++|+.. +.....+..|...|.+++|+|++++|++++.|+.|++||+++++++
T Consensus        21 gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~  100 (312)
T 4ery_A           21 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCL  100 (312)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEE
T ss_pred             ccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCCCcEE
Confidence            467899999999999999999999999999975 6677788899999999999999999999999999999999999999


Q ss_pred             EEeeeccCCeeeeeccCC-CeEEEeeCCCeEEEEEcCCCceeeEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEeCCC
Q psy12697        357 QQFSFHSAPALDVDWQSN-TSFASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDK  435 (602)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~  435 (602)
                      ..+..|...+.++.|+|+ ..+++++.|+.|++||+++++.+..+..|...|.+++|+|++++|++++.||.|++||+++
T Consensus       101 ~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~  180 (312)
T 4ery_A          101 KTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS  180 (312)
T ss_dssp             EEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred             EEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCC
Confidence            999999999999999997 5688999999999999999999999999999999999999999999999999999999998


Q ss_pred             CeeeEeeccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCcee
Q psy12697        436 DNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCE  515 (602)
Q Consensus       436 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~~~~~~~  515 (602)
                      ++.+..+..                                 .+..++..++|+|++++|++++.||.|++||+.+++++
T Consensus       181 ~~~~~~~~~---------------------------------~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~  227 (312)
T 4ery_A          181 GQCLKTLID---------------------------------DDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCL  227 (312)
T ss_dssp             CCEEEEECC---------------------------------SSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEE
T ss_pred             CceeeEEec---------------------------------cCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEE
Confidence            876655432                                 24456778888899999999999999999999999999


Q ss_pred             eeecccCCCeeEe--eec-CCc-eEEEeeCCCcEEEeecCCCCceeeeecccccceEEEEecCCcEEEEEECCCCCeEEE
Q psy12697        516 QQFSFHSAPALDV--DWQ-SNT-SFASCSTDQHIHVCKLHSDKPVKSFEGHTTGQLVHSYKGTGGIFEVCWNSRGDKVGA  591 (602)
Q Consensus       516 ~~~~~~~~~v~~~--~~s-~~~-~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~  591 (602)
                      ..+.+|......+  .++ +++ +|++++.||.|++||+.+++.+..+.+|.           ..|.+++|+|++++|++
T Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~-----------~~v~~~~~~p~~~~l~s  296 (312)
T 4ery_A          228 KTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHT-----------DVVISTACHPTENIIAS  296 (312)
T ss_dssp             EEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEECCCS-----------SCEEEEEECSSSSEEEE
T ss_pred             EEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhhhccC-----------CcEEEEeecCcCCceEE
Confidence            9998887754433  344 556 89999999999999999998888887775           77999999999999999


Q ss_pred             ec--cCCeEEee
Q psy12697        592 SA--SDGSVFKN  601 (602)
Q Consensus       592 ~~--~dg~v~i~  601 (602)
                      ++  .||.|+++
T Consensus       297 ~~~~~d~~i~~W  308 (312)
T 4ery_A          297 AALENDKTIKLW  308 (312)
T ss_dssp             EECTTTCCEEEE
T ss_pred             EEccCCccEEEe
Confidence            87  69999875

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=3.1e-42  Score=342.96  Aligned_cols=347  Identities=15%  Similarity=0.202  Sum_probs=272.5

Q ss_pred             CceEEEEECCCCCeEEEeeCCceEEEEecCCceeEEEeeccCceEEEEeCCCCCCCCCCCCccccccccccCCcceEeeC
Q psy12697        141 EPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKGTGGIFEVCWNSRGTPPNPPESMEVDASIEIPQSKATKLIG  220 (602)
Q Consensus       141 ~~V~~~~~s~d~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  220 (602)
                      ..+++++|+|++++|++++.|+.|++||+.+++....                                        +..
T Consensus        57 ~~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~~----------------------------------------~~~   96 (420)
T 3vl1_A           57 DAGKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSKM----------------------------------------LKR   96 (420)
T ss_dssp             BCCTTCEEEEEETTEEEEEETTEEEEEECCSEETTTT----------------------------------------SCS
T ss_pred             ccccceeeeecCCeEEEEEcCCcEEEEEecccceeeE----------------------------------------Eec
Confidence            3455899999999999999999999999987664321                                        122


Q ss_pred             CCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEeeCCCCCeEEEEeC
Q psy12697        221 HESEVFICAWNPVKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFLATGSY  300 (602)
Q Consensus       221 h~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~  300 (602)
                      | ..+....|+|++++|++++.||.|++||+.++....                ....|...|++++|+|++++|++|+.
T Consensus        97 ~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~----------------~~~~h~~~v~~~~~~~~~~~l~s~s~  159 (420)
T 3vl1_A           97 A-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQRE----------------IDQAHVSEITKLKFFPSGEALISSSQ  159 (420)
T ss_dssp             C-CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEE----------------ETTSSSSCEEEEEECTTSSEEEEEET
T ss_pred             C-CceEEEEEecCCCEEEEEECCCCEEEEeCCCcceee----------------ecccccCccEEEEECCCCCEEEEEeC
Confidence            3 345556789999999999999999999987553210                11246789999999999999999999


Q ss_pred             CCeEEEEcCC-CcceeecccccCCeEEEEEccCCCEEEEEecCCcEEEEeCCCCceeEEeee---ccCCeeeeeccCCCe
Q psy12697        301 DGYARIWTSD-GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSF---HSAPALDVDWQSNTS  376 (602)
Q Consensus       301 dg~i~i~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~---~~~~~~~~~~~~~~~  376 (602)
                      ||.|++||+. ++....+..|...|.+++|+|++++|++++.||.|++||+++++....+..   +...+.++.+.++..
T Consensus       160 d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  239 (420)
T 3vl1_A          160 DMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTD  239 (420)
T ss_dssp             TSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCC
T ss_pred             CCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCc
Confidence            9999999986 667778889999999999999999999999999999999999998888875   344555555443311


Q ss_pred             EEEeeCCCeEEEEEcCCCceeeEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeeeEeeccccccEEEEEECC
Q psy12697        377 FASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHDLQAHNKEIYTIKWSP  456 (602)
Q Consensus       377 ~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~  456 (602)
                                          ......+...+.+++|+|++++|++++.||.|++||+++++.+..+..            
T Consensus       240 --------------------~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~------------  287 (420)
T 3vl1_A          240 --------------------RQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPS------------  287 (420)
T ss_dssp             --------------------SSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECC------------
T ss_pred             --------------------ceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEccc------------
Confidence                                012334667889999999999999999999999999998876655432            


Q ss_pred             CCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCC-EEEEEeCCCeEEEEeCCCCce-eeeecc-cCCCeeEeeecCC
Q psy12697        457 TGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGN-YILSAGVDKTTIIWDAASGQC-EQQFSF-HSAPALDVDWQSN  533 (602)
Q Consensus       457 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~-~l~s~~~dg~i~iwd~~~~~~-~~~~~~-~~~~v~~~~~s~~  533 (602)
                                           .|...|.+++|+|+++ +|++++.||.|++||+.+++. +..+.. |...+.++.+. +
T Consensus       288 ---------------------~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~-~  345 (420)
T 3vl1_A          288 ---------------------KFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVYFA-A  345 (420)
T ss_dssp             ---------------------TTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEEEEE-T
T ss_pred             ---------------------ccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEEEeC-C
Confidence                                 2566778888888888 999999999999999998754 677776 66678888665 5


Q ss_pred             c-eEEEeeCCCcEEEeecCCCCceeeeecccccceEEEEecCCcEEEEEECCCCC---eEEEeccCCeEEe
Q psy12697        534 T-SFASCSTDQHIHVCKLHSDKPVKSFEGHTTGQLVHSYKGTGGIFEVCWNSRGD---KVGASASDGSVFK  600 (602)
Q Consensus       534 ~-~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~---~l~~~~~dg~v~i  600 (602)
                      + .|++++.|+.|++|++........+....  .........+.|.+++|+|+++   .|++++.+|.+.+
T Consensus       346 ~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~--~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~g~~~~  414 (420)
T 3vl1_A          346 GALFVSSGFDTSIKLDIISDPESERPAIEFE--TPTFLVSNDDAVSQFCYVSDDESNGEVLEVGKNNFCAL  414 (420)
T ss_dssp             TEEEEEETTTEEEEEEEECCTTCCSCEECTT--SCEEECCSSCCCCEEEEECCSSSSCEEEEEETTTEEEE
T ss_pred             CCEEEEecCCccEEEEeccCCCCCccceecc--CccEEccCCcceEEEEEccCCCCcceEEEEcCCceEEE
Confidence            6 99999999999999998754332222111  1112223457899999999999   7777888887765

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=7.4e-42  Score=334.10  Aligned_cols=283  Identities=18%  Similarity=0.261  Sum_probs=243.4

Q ss_pred             CCCCceeEEeeCCCCCeEEEEeCCCeEEEEcCC-CcceeecccccCCeEEEEEccCCCEEEEEecCCcEEEEeCCCCc--
Q psy12697        278 PSNKDVTSLDWNNNGSFLATGSYDGYARIWTSD-GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQ--  354 (602)
Q Consensus       278 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~--  354 (602)
                      .|...|++++|+|++++|++|+.||.|++||.. +.....+..|...|.+++|+|++++|++++.|+.+++||+.+..  
T Consensus        64 gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~~~~~~~  143 (380)
T 3iz6_a           64 GHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQADR  143 (380)
T ss_dssp             CCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEEEECCCCSSC
T ss_pred             ccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEEECCCCccc
Confidence            357889999999999999999999999999975 66677888999999999999999999999999999999987532  


Q ss_pred             -----eeEEeeeccCCeeeeeccCC--CeEEEeeCCCeEEEEEcCCCceeeEe-----ccCCCCeEEEEECC-CCCEEEE
Q psy12697        355 -----CEQQFSFHSAPALDVDWQSN--TSFASCSTDQHIHVCKLHSDKPVKSF-----EGHTNEVNAIKWDP-QGLLLAS  421 (602)
Q Consensus       355 -----~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~i~i~d~~~~~~~~~~-----~~~~~~i~~~~~~~-~~~~l~~  421 (602)
                           ....+..|...+.++.|.|+  ..+++++.|+.|++||+.+++.+..+     .+|...|.+++|+| ++.+|++
T Consensus       144 ~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s  223 (380)
T 3iz6_a          144 DGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFIS  223 (380)
T ss_dssp             CCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEE
T ss_pred             cCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEE
Confidence                 34456788889999999885  46999999999999999999988777     67899999999987 8899999


Q ss_pred             EECCCeEEEEeCCC-CeeeEeeccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeC
Q psy12697        422 CSDDMTLKIWSLDK-DNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGV  500 (602)
Q Consensus       422 ~~~dg~i~iwd~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~  500 (602)
                      |+.|+.|++||++. .+.+..+.                                  +|...|.+++|+|++++|++|+.
T Consensus       224 gs~D~~v~~wd~~~~~~~~~~~~----------------------------------~h~~~v~~v~~~p~~~~l~s~s~  269 (380)
T 3iz6_a          224 GSCDTTVRLWDLRITSRAVRTYH----------------------------------GHEGDINSVKFFPDGQRFGTGSD  269 (380)
T ss_dssp             EETTSCEEEEETTTTCCCCEEEC----------------------------------CCSSCCCEEEECTTSSEEEEECS
T ss_pred             EECCCeEEEEECCCCCcceEEEC----------------------------------CcCCCeEEEEEecCCCeEEEEcC
Confidence            99999999999974 34444433                                  46777888888889999999999


Q ss_pred             CCeEEEEeCCCCceeeeecccCC-------CeeEeeecCCc-eEEEeeCCCcEEEeecCCCCceeeeecccccceEEEEe
Q psy12697        501 DKTTIIWDAASGQCEQQFSFHSA-------PALDVDWQSNT-SFASCSTDQHIHVCKLHSDKPVKSFEGHTTGQLVHSYK  572 (602)
Q Consensus       501 dg~i~iwd~~~~~~~~~~~~~~~-------~v~~~~~s~~~-~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~  572 (602)
                      ||+|++||+.+++++..+..+..       .|++++|+|+| .|++|+.||.|++||+.+++.+..+.....+       
T Consensus       270 D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~-------  342 (380)
T 3iz6_a          270 DGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNS-------  342 (380)
T ss_dssp             SSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSS-------
T ss_pred             CCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCC-------
Confidence            99999999999998887765432       48999999999 9999999999999999888777665321111       


Q ss_pred             cCCcEEEEEECCCCCeEEEeccCCeEEee
Q psy12697        573 GTGGIFEVCWNSRGDKVGASASDGSVFKN  601 (602)
Q Consensus       573 ~~~~i~~l~~spdg~~l~~~~~dg~v~i~  601 (602)
                      +.+.|.+++|+|||++|++|+.||+|+|+
T Consensus       343 h~~~v~~l~~s~dg~~l~sgs~D~~i~iW  371 (380)
T 3iz6_a          343 HEGRISCLGLSSDGSALCTGSWDKNLKIW  371 (380)
T ss_dssp             CCCCCCEEEECSSSSEEEEECTTSCEEEE
T ss_pred             CCCceEEEEECCCCCEEEEeeCCCCEEEE
Confidence            23779999999999999999999999985

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=1.1e-41  Score=334.41  Aligned_cols=314  Identities=17%  Similarity=0.176  Sum_probs=259.2

Q ss_pred             eeeeecccceeeeeeeccCCceEEEEECCCC-CeEEEeeCCceEEEEecCCceeEEEeeccCceEEEEeCCCCCCCCCCC
Q psy12697        122 LPLWDVERGECLNTLTRHTEPVYSVAFSPDG-KFLASGSFDKCVHIWSARTGQLVHSYKGTGGIFEVCWNSRGTPPNPPE  200 (602)
Q Consensus       122 i~vwd~~~~~~~~~l~~h~~~V~~~~~s~d~-~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (602)
                      ..+|++.+.+....+.+|...|++++|+|++ ++|++|+.|+.|+|||+.+++....+.                     
T Consensus        55 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~---------------------  113 (383)
T 3ei3_B           55 PFIRSLKSYKLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQ---------------------  113 (383)
T ss_dssp             HHHHHHTTCEEEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEEC---------------------
T ss_pred             cccccccccceEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeee---------------------
Confidence            3466777888899999999999999999999 999999999999999999887654322                     


Q ss_pred             CccccccccccCCcceEeeCCCcceEEEEEcC-CCCEEEEeeCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCC
Q psy12697        201 SMEVDASIEIPQSKATKLIGHESEVFICAWNP-VKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPS  279 (602)
Q Consensus       201 ~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~-~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (602)
                                       ..+|...|.+++|+| ++++|++++.|+.|++||+....      .....        ....+
T Consensus       114 -----------------~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~------~~~~~--------~~~~~  162 (383)
T 3ei3_B          114 -----------------GMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSGSV------IQVFA--------KTDSW  162 (383)
T ss_dssp             -----------------CCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETTSCE------EEEEE--------CCCCS
T ss_pred             -----------------cCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCCCc------eEEEe--------ccCCC
Confidence                             236999999999999 67999999999999999998421      11110        01123


Q ss_pred             CCceeEEeeCCCCCeEEEEeCCCeEEEEcCCCcceeecccccCCeEEEEEccCCC-EEEEEecCCcEEEEeCCCCceeEE
Q psy12697        280 NKDVTSLDWNNNGSFLATGSYDGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGN-YILSAGVDKTTIIWDAASGQCEQQ  358 (602)
Q Consensus       280 ~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~~wd~~~~~~~~~  358 (602)
                      ...|.+++|+|++++|++|+.||.|++||+++.....+..|...|.+++|+|+++ +|++++.|+.|++||+++++..  
T Consensus       163 ~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~--  240 (383)
T 3ei3_B          163 DYWYCCVDVSVSRQMLATGDSTGRLLLLGLDGHEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDK--  240 (383)
T ss_dssp             SCCEEEEEEETTTTEEEEEETTSEEEEEETTSCEEEEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCST--
T ss_pred             CCCeEEEEECCCCCEEEEECCCCCEEEEECCCCEEEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcc--
Confidence            4779999999999999999999999999999888899999999999999999999 8999999999999998764210  


Q ss_pred             eeeccCCeeeeeccCCCeEEEeeCCCeEEEEEcCCCceeeEeccCCCCeEEEEECC-CCCEEEEEECCCeEEEEeCCCCe
Q psy12697        359 FSFHSAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDP-QGLLLASCSDDMTLKIWSLDKDN  437 (602)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~  437 (602)
                                                         +..+..+ +|...|.+++|+| ++++|++++.|+.|++||+++++
T Consensus       241 -----------------------------------~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~  284 (383)
T 3ei3_B          241 -----------------------------------NSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWS  284 (383)
T ss_dssp             -----------------------------------TCEEEEE-ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTT
T ss_pred             -----------------------------------cceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCc
Confidence                                               1122333 4888999999999 99999999999999999999887


Q ss_pred             eeEeeccccc-------cEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCCCeEEEEeCC
Q psy12697        438 CVHDLQAHNK-------EIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAA  510 (602)
Q Consensus       438 ~~~~~~~~~~-------~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~~  510 (602)
                      ....+..|..       .+. +.|+|                       ...+..++|+|++++  +++.||.|++||+.
T Consensus       285 ~~~~~~~~~~~~~~~~~~~~-~~~~p-----------------------~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~  338 (383)
T 3ei3_B          285 KPDQIIIHPHRQFQHLTPIK-ATWHP-----------------------MYDLIVAGRYPDDQL--LLNDKRTIDIYDAN  338 (383)
T ss_dssp             SCSEEEECCBCCCTTSCCCC-CEECS-----------------------SSSEEEEECBCCTTT--CTTCCCCEEEEETT
T ss_pred             cccccccccccccccccceE-EeccC-----------------------CCCceEEEecCCccc--ccCCCCeEEEEecC
Confidence            7666654432       222 24444                       345677899999998  89999999999999


Q ss_pred             CCceeeeecc--cCCCeeEeeecCCc-eEEEeeCCCcEEEeecCC
Q psy12697        511 SGQCEQQFSF--HSAPALDVDWQSNT-SFASCSTDQHIHVCKLHS  552 (602)
Q Consensus       511 ~~~~~~~~~~--~~~~v~~~~~s~~~-~l~~~~~d~~i~iw~~~~  552 (602)
                      +++++..+.+  |...+..++|+|++ .|++++ |+.|++||+++
T Consensus       339 ~~~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~s-d~~i~iw~~~~  382 (383)
T 3ei3_B          339 SGGLVHQLRDPNAAGIISLNKFSPTGDVLASGM-GFNILIWNRED  382 (383)
T ss_dssp             TCCEEEEECBTTBCSCCCEEEECTTSSEEEEEE-TTEEEEEECC-
T ss_pred             CCceeeeecCCCCCceEEEEEEecCccEEEEec-CCcEEEEecCC
Confidence            9999999987  45677888999999 888886 99999999853

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.7e-42  Score=342.77  Aligned_cols=367  Identities=13%  Similarity=0.164  Sum_probs=284.4

Q ss_pred             eeecccceeeeee-eccCCceEEEEECC-CCCeEEEeeCCceEEEEecCC---ceeEEEeeccCceEEEEeCCCCCCCCC
Q psy12697        124 LWDVERGECLNTL-TRHTEPVYSVAFSP-DGKFLASGSFDKCVHIWSART---GQLVHSYKGTGGIFEVCWNSRGTPPNP  198 (602)
Q Consensus       124 vwd~~~~~~~~~l-~~h~~~V~~~~~s~-d~~~l~s~~~d~~v~iwd~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (602)
                      .|+ .+++.+.++ .+|.+.|++++|+| ++++||+|+.||+|+|||+.+   +....                      
T Consensus        47 ~w~-~~g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~----------------------  103 (437)
T 3gre_A           47 MGN-LRGKLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYS----------------------  103 (437)
T ss_dssp             GGG-CCCCEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCS----------------------
T ss_pred             ccc-ccceEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccc----------------------
Confidence            488 568888899 89999999999999 999999999999999999876   32110                      


Q ss_pred             CCCccccccccccCCcceEeeCCCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccC
Q psy12697        199 PESMEVDASIEIPQSKATKLIGHESEVFICAWNPVKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVP  278 (602)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (602)
                                     . ....+|...|.+++|+|++++|++++.||.|++||+........  .....            
T Consensus       104 ---------------~-~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~--~~~~~------------  153 (437)
T 3gre_A          104 ---------------S-SLTYDCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESE--VKFLN------------  153 (437)
T ss_dssp             ---------------C-SEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTE--EEEEE------------
T ss_pred             ---------------e-eeeccCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCce--eeccc------------
Confidence                           0 11225899999999999999999999999999999852110000  00000            


Q ss_pred             CCCceeEEeeCCCCCeEEEEeCCCeEEEEcCCCcceeecccccCCeEEEE--EccCCCEEEEEecCCcEEEEeCCCCcee
Q psy12697        279 SNKDVTSLDWNNNGSFLATGSYDGYARIWTSDGSLKSTLGQHKGPIFALK--WNKRGNYILSAGVDKTTIIWDAASGQCE  356 (602)
Q Consensus       279 ~~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~i~~~~--~~~~~~~l~~~~~dg~i~~wd~~~~~~~  356 (602)
                       ...+..+.|+|++                           +...+.++.  +++++++|++++.|+.|++||+++++.+
T Consensus       154 -~~~i~~~~~~~~~---------------------------~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~  205 (437)
T 3gre_A          154 -CECIRKINLKNFG---------------------------KNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERL  205 (437)
T ss_dssp             -EEEEEEEEGGGGS---------------------------SCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEE
T ss_pred             -cceeEEEEccCcc---------------------------cccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeee
Confidence             0134555555432                           344566666  6789999999999999999999999999


Q ss_pred             EEeee--ccCCeeeeeccCCC-eEEEeeCCCeEEEEEcCCCceeeEec-cCCCCeEEEEECC----CCCEEEEEECCCeE
Q psy12697        357 QQFSF--HSAPALDVDWQSNT-SFASCSTDQHIHVCKLHSDKPVKSFE-GHTNEVNAIKWDP----QGLLLASCSDDMTL  428 (602)
Q Consensus       357 ~~~~~--~~~~~~~~~~~~~~-~~~~~~~~~~i~i~d~~~~~~~~~~~-~~~~~i~~~~~~~----~~~~l~~~~~dg~i  428 (602)
                      ..+..  |...+.+++|+|++ .+++++.||.|++||+++++++..+. .|...|.+++|+|    ++++|++++.||.|
T Consensus       206 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i  285 (437)
T 3gre_A          206 QIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFL  285 (437)
T ss_dssp             EEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEE
T ss_pred             EEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcE
Confidence            99988  88999999999875 58889999999999999999988886 7888999996664    68899999999999


Q ss_pred             EEEeCCCCeeeEeeccccccEEEEEECCCCCCCCCCCcceeeeeeeccCC--ccCCeEEEEEccCCCEEEEEeCCCeEEE
Q psy12697        429 KIWSLDKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQ--HKGPIFALKWNKRGNYILSAGVDKTTII  506 (602)
Q Consensus       429 ~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~i~~s~~~~~l~s~~~dg~i~i  506 (602)
                      ++||+++++++..+..|...+..+.|+|++..+..          ..+.+  |...|.+++|+ ++++|++++.||.|++
T Consensus       286 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----------~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~  354 (437)
T 3gre_A          286 TIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEE----------LNFCGIRSLNALSTISVS-NDKILLTDEATSSIVM  354 (437)
T ss_dssp             EEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGG----------CCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEE
T ss_pred             EEEEcCCCcEEEEEEcCCCCCccceeccccccccc----------ceecccccCCceEEEEEC-CceEEEecCCCCeEEE
Confidence            99999999999999999988888888887754421          12334  89999999999 8899999999999999


Q ss_pred             EeCCCCceeeeecccCC---CeeEeeecCCc-eEEEeeCCCcEEEeecCCCCceeeeecccccceEEEEecCCcEEEEEE
Q psy12697        507 WDAASGQCEQQFSFHSA---PALDVDWQSNT-SFASCSTDQHIHVCKLHSDKPVKSFEGHTTGQLVHSYKGTGGIFEVCW  582 (602)
Q Consensus       507 wd~~~~~~~~~~~~~~~---~v~~~~~s~~~-~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~  582 (602)
                      ||+.++++...+.+|..   .+....++++. .++..        |+............|           ...|.+++|
T Consensus       355 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~h-----------~~~I~~i~~  415 (437)
T 3gre_A          355 FSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRK--------MKRTSTHSVDDSLYH-----------HDIINSIST  415 (437)
T ss_dssp             EETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEE--------CC------------------------CCCEEEEEE
T ss_pred             EECCCcccceEEecccccCceEEEEEeecceEEEEEe--------cccccccccCccccc-----------ccceeeEee
Confidence            99999999998887643   34555666666 33333        333333333222223           478999999


Q ss_pred             CCC--CCeEEEeccCCeEEee
Q psy12697        583 NSR--GDKVGASASDGSVFKN  601 (602)
Q Consensus       583 spd--g~~l~~~~~dg~v~i~  601 (602)
                      +++  +.+|++|+.||.|+|.
T Consensus       416 ~~~~~~~~l~s~~~dG~I~iw  436 (437)
T 3gre_A          416 CEVDETPLLVACDNSGLIGIF  436 (437)
T ss_dssp             EESSSSEEEEEEETTSCEEEE
T ss_pred             eccCCceEEEEEcCCceEEEe
Confidence            998  7899999999999985

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=1.8e-40  Score=319.89  Aligned_cols=316  Identities=15%  Similarity=0.221  Sum_probs=267.4

Q ss_pred             CCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEeeCCCCCeEEEEeC
Q psy12697        221 HESEVFICAWNPVKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFLATGSY  300 (602)
Q Consensus       221 h~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~  300 (602)
                      +..+|.+++|+|+|++++++..++.+..|......       . ..        ....|...|++++|+|+++++++++ 
T Consensus         8 ~~~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~-------~-~~--------~~~~h~~~v~~~~~~~~~~~l~~~~-   70 (337)
T 1gxr_A            8 GSKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHA-------R-QI--------NTLNHGEVVCAVTISNPTRHVYTGG-   70 (337)
T ss_dssp             EEEECCEEEECSSSCEEECCCCTTSSSSTTCCSEE-------E-EE--------EEECCSSCCCEEEECSSSSEEEEEC-
T ss_pred             cCCceeEEEECCCCCEEEeecCCCcEeccccCCcc-------c-cc--------eeccCCCceEEEEEecCCcEEEEcC-
Confidence            56789999999999999998887776665432211       0 00        1124678999999999999999999 


Q ss_pred             CCeEEEEcCCCc----ceeecc--cccCCeEEEEEccCCCEEEEEecCCcEEEEeCCCCc--eeEEeeeccCCeeeeecc
Q psy12697        301 DGYARIWTSDGS----LKSTLG--QHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQ--CEQQFSFHSAPALDVDWQ  372 (602)
Q Consensus       301 dg~i~i~~~~~~----~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~--~~~~~~~~~~~~~~~~~~  372 (602)
                      ||.|++|++...    ....+.  .|...|.+++|+|++++|++++.||.|++||+.+++  ....+..+...+.++.|+
T Consensus        71 dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~  150 (337)
T 1gxr_A           71 KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAIS  150 (337)
T ss_dssp             BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEEC
T ss_pred             CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEEC
Confidence            999999998632    222222  788999999999999999999999999999999887  556677788899999999


Q ss_pred             CCC-eEEEeeCCCeEEEEEcCCCceeeEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeeeEeeccccccEEE
Q psy12697        373 SNT-SFASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHDLQAHNKEIYT  451 (602)
Q Consensus       373 ~~~-~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~  451 (602)
                      +++ .+++++.++.|++||+++++.+..+..|...|.+++|+|++++|++++.||.|++||+++++.+..+.        
T Consensus       151 ~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~--------  222 (337)
T 1gxr_A          151 PDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHD--------  222 (337)
T ss_dssp             TTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE--------
T ss_pred             CCCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeeec--------
Confidence            875 58889999999999999999999999999999999999999999999999999999999887665542        


Q ss_pred             EEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeeecccCCCeeEeeec
Q psy12697        452 IKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQ  531 (602)
Q Consensus       452 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s  531 (602)
                                                 +...+.+++|+|++++|++++.|+.|++||+.+++.. .+..|...|.+++|+
T Consensus       223 ---------------------------~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~-~~~~~~~~v~~~~~~  274 (337)
T 1gxr_A          223 ---------------------------FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKY-QLHLHESCVLSLKFA  274 (337)
T ss_dssp             ---------------------------CSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEE-EECCCSSCEEEEEEC
T ss_pred             ---------------------------CCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeE-EEcCCccceeEEEEC
Confidence                                       3456778888889999999999999999999988754 567799999999999


Q ss_pred             CCc-eEEEeeCCCcEEEeecCCCCceeeeecccccceEEEEecCCcEEEEEECCCCCeEEEeccCCeEEee
Q psy12697        532 SNT-SFASCSTDQHIHVCKLHSDKPVKSFEGHTTGQLVHSYKGTGGIFEVCWNSRGDKVGASASDGSVFKN  601 (602)
Q Consensus       532 ~~~-~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~v~i~  601 (602)
                      |++ +|++++.||.|++|++.+++.+...            .....+.+++|+|++++|++++.||.|++.
T Consensus       275 ~~~~~l~~~~~dg~i~~~~~~~~~~~~~~------------~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw  333 (337)
T 1gxr_A          275 YCGKWFVSTGKDNLLNAWRTPYGASIFQS------------KESSSVLSCDISVDDKYIVTGSGDKKATVY  333 (337)
T ss_dssp             TTSSEEEEEETTSEEEEEETTTCCEEEEE------------ECSSCEEEEEECTTSCEEEEEETTSCEEEE
T ss_pred             CCCCEEEEecCCCcEEEEECCCCeEEEEe------------cCCCcEEEEEECCCCCEEEEecCCCeEEEE
Confidence            999 9999999999999999877665332            234789999999999999999999999874

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=5.9e-40  Score=316.75  Aligned_cols=292  Identities=22%  Similarity=0.319  Sum_probs=244.2

Q ss_pred             eEeeCCCcceEEEEEcCC-CCEEEEeeCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEeeCCCCCe
Q psy12697        216 TKLIGHESEVFICAWNPV-KDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSF  294 (602)
Q Consensus       216 ~~l~~h~~~v~~~~~~~~-~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  294 (602)
                      .+|.||.+.|++++|+|+ +++|++|+.|++|++||+.+..........           ....|...|.+++|+|++++
T Consensus        32 ~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~-----------~l~~h~~~V~~~~~s~dg~~  100 (340)
T 4aow_A           32 GTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQR-----------ALRGHSHFVSDVVISSDGQF  100 (340)
T ss_dssp             EEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEE-----------EECCCSSCEEEEEECTTSSE
T ss_pred             EEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeE-----------EEeCCCCCEEEEEECCCCCE
Confidence            467899999999999998 589999999999999999876543221111           12346789999999999999


Q ss_pred             EEEEeCCCeEEEEcCCC-cceeecccccCCeEEEEEccCCCEEEEEecCCcEEEEeCCCCceeE-EeeeccCCeeeeecc
Q psy12697        295 LATGSYDGYARIWTSDG-SLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQ-QFSFHSAPALDVDWQ  372 (602)
Q Consensus       295 l~~~~~dg~i~i~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~-~~~~~~~~~~~~~~~  372 (602)
                      |++++.|+.|++|+... ........+...+....+++++++|++++.|+.+++||+....... ....+...+..+.|.
T Consensus       101 l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~  180 (340)
T 4aow_A          101 ALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFS  180 (340)
T ss_dssp             EEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEEC
T ss_pred             EEEEcccccceEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEc
Confidence            99999999999999874 4455566778889999999999999999999999999988765433 345677888888887


Q ss_pred             CC---CeEEEeeCCCeEEEEEcCCCceeeEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeeeEeeccccccE
Q psy12697        373 SN---TSFASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHDLQAHNKEI  449 (602)
Q Consensus       373 ~~---~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i  449 (602)
                      ++   ..+++++.|+.|++||+.+++.+..+.+|...|++++|+|++++|++|+.||.|++||+++.+.+..+..     
T Consensus       181 ~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~-----  255 (340)
T 4aow_A          181 PNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDG-----  255 (340)
T ss_dssp             SCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEEC-----
T ss_pred             cCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecC-----
Confidence            65   3578899999999999999999999999999999999999999999999999999999999888776643     


Q ss_pred             EEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeeec---------c
Q psy12697        450 YTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFS---------F  520 (602)
Q Consensus       450 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~---------~  520 (602)
                                                    ...|.+++|+|++. +++++.|+.|++||++++..+..+.         .
T Consensus       256 ------------------------------~~~v~~~~~~~~~~-~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~  304 (340)
T 4aow_A          256 ------------------------------GDIINALCFSPNRY-WLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKA  304 (340)
T ss_dssp             ------------------------------SSCEEEEEECSSSS-EEEEEETTEEEEEETTTTEEEEEECCC-------C
T ss_pred             ------------------------------CceEEeeecCCCCc-eeeccCCCEEEEEECCCCeEEEeccccceeeeccC
Confidence                                          23456666666665 5566679999999999887765543         5


Q ss_pred             cCCCeeEeeecCCc-eEEEeeCCCcEEEeecCCCC
Q psy12697        521 HSAPALDVDWQSNT-SFASCSTDQHIHVCKLHSDK  554 (602)
Q Consensus       521 ~~~~v~~~~~s~~~-~l~~~~~d~~i~iw~~~~~~  554 (602)
                      |...|++++|+||+ +|++|+.||.|+|||+++|.
T Consensus       305 h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~tGt  339 (340)
T 4aow_A          305 EPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIGT  339 (340)
T ss_dssp             CCCCEEEEEECTTSSEEEEEETTSCEEEEEEEC--
T ss_pred             CCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCcC
Confidence            78899999999999 99999999999999988764

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=7.8e-40  Score=321.30  Aligned_cols=283  Identities=19%  Similarity=0.355  Sum_probs=242.8

Q ss_pred             CCCceeEEeeCCCCCeEEEEeCCCeEEEEcCC-Ccceeeccccc------------------CCeEEEEEccCCCEEEEE
Q psy12697        279 SNKDVTSLDWNNNGSFLATGSYDGYARIWTSD-GSLKSTLGQHK------------------GPIFALKWNKRGNYILSA  339 (602)
Q Consensus       279 ~~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~-~~~~~~~~~~~------------------~~i~~~~~~~~~~~l~~~  339 (602)
                      |...|.+++|+|+|++|++|+ ++.+++|+.. +.....+..|.                  ..|.+++|+|++++|+++
T Consensus        63 h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s~  141 (393)
T 1erj_A           63 HTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATG  141 (393)
T ss_dssp             CSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEEE
T ss_pred             CCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEEE
Confidence            568899999999999999986 6889999976 55555554432                  248999999999999999


Q ss_pred             ecCCcEEEEeCCCCceeEEeeeccCCeeeeeccCCC-eEEEeeCCCeEEEEEcCCCceeeEeccCCCCeEEEEECC-CCC
Q psy12697        340 GVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNT-SFASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDP-QGL  417 (602)
Q Consensus       340 ~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~-~~~  417 (602)
                      +.|+.|++||+.+++....+..|...+.+++|+|++ .+++++.|+.|++||+++++....+. +...+.+++|+| +++
T Consensus       142 ~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~  220 (393)
T 1erj_A          142 AEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLS-IEDGVTTVAVSPGDGK  220 (393)
T ss_dssp             ETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECSTTCC
T ss_pred             cCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEE-cCCCcEEEEEECCCCC
Confidence            999999999999999999999999999999999874 68899999999999999998877776 567799999999 899


Q ss_pred             EEEEEECCCeEEEEeCCCCeeeEeeccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEE
Q psy12697        418 LLASCSDDMTLKIWSLDKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILS  497 (602)
Q Consensus       418 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s  497 (602)
                      +|++|+.||.|++||++++..+..+....                           ....+|...|.+++|+|+|++|++
T Consensus       221 ~l~~~s~d~~v~iwd~~~~~~~~~~~~~~---------------------------~~~~~h~~~v~~v~~~~~g~~l~s  273 (393)
T 1erj_A          221 YIAAGSLDRAVRVWDSETGFLVERLDSEN---------------------------ESGTGHKDSVYSVVFTRDGQSVVS  273 (393)
T ss_dssp             EEEEEETTSCEEEEETTTCCEEEEEC---------------------------------CCCSSCEEEEEECTTSSEEEE
T ss_pred             EEEEEcCCCcEEEEECCCCcEEEeecccc---------------------------cCCCCCCCCEEEEEECCCCCEEEE
Confidence            99999999999999999887766553211                           012358889999999999999999


Q ss_pred             EeCCCeEEEEeCCCC------------ceeeeecccCCCeeEeeecCCc-eEEEeeCCCcEEEeecCCCCceeeeecccc
Q psy12697        498 AGVDKTTIIWDAASG------------QCEQQFSFHSAPALDVDWQSNT-SFASCSTDQHIHVCKLHSDKPVKSFEGHTT  564 (602)
Q Consensus       498 ~~~dg~i~iwd~~~~------------~~~~~~~~~~~~v~~~~~s~~~-~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~  564 (602)
                      ++.|+.|++||+.+.            .+...+.+|...|.+++|+|++ +|++++.|+.|++||+.+++++..+.+|. 
T Consensus       274 ~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~-  352 (393)
T 1erj_A          274 GSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHR-  352 (393)
T ss_dssp             EETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCS-
T ss_pred             EeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCC-
Confidence            999999999999753            4556778899999999999999 99999999999999999999888888776 


Q ss_pred             cceEEEEecCCcEEEEEECC------CCCeEEEeccCCeEEee
Q psy12697        565 GQLVHSYKGTGGIFEVCWNS------RGDKVGASASDGSVFKN  601 (602)
Q Consensus       565 ~~~~~~~~~~~~i~~l~~sp------dg~~l~~~~~dg~v~i~  601 (602)
                                +.|.+++|+|      ++++||+|+.||+|+|+
T Consensus       353 ----------~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW  385 (393)
T 1erj_A          353 ----------NSVISVAVANGSSLGPEYNVFATGSGDCKARIW  385 (393)
T ss_dssp             ----------SCEEEEEECSSCTTCTTCEEEEEEETTSEEEEE
T ss_pred             ----------CCEEEEEecCCcCcCCCCCEEEEECCCCcEEEC
Confidence                      6799999876      78999999999999985

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.9e-39  Score=308.00  Aligned_cols=295  Identities=24%  Similarity=0.382  Sum_probs=253.3

Q ss_pred             ceeeeeeeccCCceEEEEECCCCCeEEEeeCCceEEEEecCCceeEEEeeccCceEEEEeCCCCCCCCCCCCcccccccc
Q psy12697        130 GECLNTLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKGTGGIFEVCWNSRGTPPNPPESMEVDASIE  209 (602)
Q Consensus       130 ~~~~~~l~~h~~~V~~~~~s~d~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (602)
                      .+.++++.+|.+.|++++| |++++|++++.||.|++||+.+++...                                 
T Consensus         8 ~~~~~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~---------------------------------   53 (313)
T 3odt_A            8 YQLSATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGT---------------------------------   53 (313)
T ss_dssp             CEEEEEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEE---------------------------------
T ss_pred             HHHHHHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEE---------------------------------
Confidence            3778899999999999999 999999999999999999998887664                                 


Q ss_pred             ccCCcceEeeCCCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEeeC
Q psy12697        210 IPQSKATKLIGHESEVFICAWNPVKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWN  289 (602)
Q Consensus       210 ~~~~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  289 (602)
                             .+..|...|.+++|+|++++|++++.|+.|++|++..........             ....|...|.+++| 
T Consensus        54 -------~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~-------------~~~~~~~~i~~~~~-  112 (313)
T 3odt_A           54 -------VVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFATSGEDPLY-------------TLIGHQGNVCSLSF-  112 (313)
T ss_dssp             -------EEEECSSCEEEEEEETTTTEEEEEETTSCEEEEETTCCTTSCC-C-------------EECCCSSCEEEEEE-
T ss_pred             -------EeecCCccEEEEEECCCCCEEEEecCCCeEEEEEeeecCCCCccc-------------chhhcccCEEEEEe-
Confidence                   345689999999999999999999999999999998754322111             11235788999999 


Q ss_pred             CCCCeEEEEeCCCeEEEEcCCCcceeecccccCCeEEEEEcc-CCCEEEEEecCCcEEEEeCCCCceeEEeee-ccCCee
Q psy12697        290 NNGSFLATGSYDGYARIWTSDGSLKSTLGQHKGPIFALKWNK-RGNYILSAGVDKTTIIWDAASGQCEQQFSF-HSAPAL  367 (602)
Q Consensus       290 ~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~-~~~~~~  367 (602)
                       +++++++++.||.|++|| .+.....+..|...+.+++|.| +++++++++.||.|++||  ..+....+.. +...+.
T Consensus       113 -~~~~l~~~~~d~~i~~~d-~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d--~~~~~~~~~~~~~~~i~  188 (313)
T 3odt_A          113 -QDGVVISGSWDKTAKVWK-EGSLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQ--NDKVIKTFSGIHNDVVR  188 (313)
T ss_dssp             -ETTEEEEEETTSEEEEEE-TTEEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEE--TTEEEEEECSSCSSCEE
T ss_pred             -cCCEEEEEeCCCCEEEEc-CCcEEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEe--cCceEEEEeccCcccEE
Confidence             577999999999999999 6677778888999999999998 899999999999999999  4566666666 888999


Q ss_pred             eeeccCCCeEEEeeCCCeEEEEEcCCCceeeEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeeeEeeccccc
Q psy12697        368 DVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHDLQAHNK  447 (602)
Q Consensus       368 ~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~  447 (602)
                      ++.|++++.+++++.++.|++||+++++++..+.+|...|.+++|+|++ .|++++.||.|++||+++++.+..+..|..
T Consensus       189 ~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~  267 (313)
T 3odt_A          189 HLAVVDDGHFISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQVITLPAI  267 (313)
T ss_dssp             EEEEEETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTS-CEEEEETTSEEEEECTTTCCEEEEEECSSS
T ss_pred             EEEEcCCCeEEEccCCCeEEEEECCchhhhhhhhcCCceEEEEEEecCC-CEEEEecCCEEEEEECCCCceeEEEeccCc
Confidence            9999999999999999999999999999999999999999999999999 689999999999999999888877766544


Q ss_pred             cEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeeec
Q psy12697        448 EIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFS  519 (602)
Q Consensus       448 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~  519 (602)
                                                        .|.+++|+|+++ +++++.||.|++||+.+++......
T Consensus       268 ----------------------------------~i~~~~~~~~~~-~~~~~~dg~i~iw~~~~~~~~~~~~  304 (313)
T 3odt_A          268 ----------------------------------SIWSVDCMSNGD-IIVGSSDNLVRIFSQEKSRWASEDE  304 (313)
T ss_dssp             ----------------------------------CEEEEEECTTSC-EEEEETTSCEEEEESCGGGCCC---
T ss_pred             ----------------------------------eEEEEEEccCCC-EEEEeCCCcEEEEeCCCCceeehhh
Confidence                                              455566666777 6679999999999999887765443

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=1.8e-41  Score=337.92  Aligned_cols=312  Identities=20%  Similarity=0.249  Sum_probs=241.1

Q ss_pred             ceeeeeeeccCCceEEEEECC-CCCeEEEeeCCceEEEEecCCceeEEEeeccCceEEEEeCCCCCCCCCCCCccccccc
Q psy12697        130 GECLNTLTRHTEPVYSVAFSP-DGKFLASGSFDKCVHIWSARTGQLVHSYKGTGGIFEVCWNSRGTPPNPPESMEVDASI  208 (602)
Q Consensus       130 ~~~~~~l~~h~~~V~~~~~s~-d~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (602)
                      .+......+|...|+||+|+| ++++||+|+.||+|+|||+.+++....                               
T Consensus       109 ~~~~~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~-------------------------------  157 (435)
T 4e54_B          109 YRILQKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTF-------------------------------  157 (435)
T ss_dssp             TTSCCEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEE-------------------------------
T ss_pred             eeecccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeE-------------------------------
Confidence            344566788999999999999 678999999999999999987754322                               


Q ss_pred             cccCCcceEeeCCCcceEEEEEcC-CCCEEEEeeCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEe
Q psy12697        209 EIPQSKATKLIGHESEVFICAWNP-VKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLD  287 (602)
Q Consensus       209 ~~~~~~~~~l~~h~~~v~~~~~~~-~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  287 (602)
                             ..+.+|.+.|.+++|+| ++++|++++.||+|++||+++...      ....        ....+...+.+++
T Consensus       158 -------~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~------~~~~--------~~~~~~~~~~~~~  216 (435)
T 4e54_B          158 -------IKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNIL------RVFA--------SSDTINIWFCSLD  216 (435)
T ss_dssp             -------ECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEE------EEEE--------CCSSCSCCCCCEE
T ss_pred             -------EEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCce------eEEe--------ccCCCCccEEEEE
Confidence                   23457999999999998 678999999999999999975421      1000        0112235678999


Q ss_pred             eCCCCCeEEEEeCCCeEEEEcCCCcceeecccccCCeEEEEEccCCC-EEEEEecCCcEEEEeCCCCceeEEeeeccCCe
Q psy12697        288 WNNNGSFLATGSYDGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGN-YILSAGVDKTTIIWDAASGQCEQQFSFHSAPA  366 (602)
Q Consensus       288 ~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~  366 (602)
                      |+|++++|++|+.||.|++||++++....+..|...|.+++|+|+++ ++++++.|+.|++||+++.+....        
T Consensus       217 ~~~~~~~l~~g~~dg~i~~wd~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~--------  288 (435)
T 4e54_B          217 VSASSRMVVTGDNVGNVILLNMDGKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKAS--------  288 (435)
T ss_dssp             EETTTTEEEEECSSSBEEEEESSSCBCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSC--------
T ss_pred             ECCCCCEEEEEeCCCcEeeeccCcceeEEEecccceEEeeeecCCCceEEEEecCcceeeEEecccccccce--------
Confidence            99999999999999999999999988888999999999999999886 677899999999999886543211        


Q ss_pred             eeeeccCCCeEEEeeCCCeEEEEEcCCCceeeEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeeeEeecccc
Q psy12697        367 LDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHDLQAHN  446 (602)
Q Consensus       367 ~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~  446 (602)
                                                    .....+|...|++++|+|+|++|++++.||.|++||+.++.....+..|.
T Consensus       289 ------------------------------~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~  338 (435)
T 4e54_B          289 ------------------------------FLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHP  338 (435)
T ss_dssp             ------------------------------CSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCC
T ss_pred             ------------------------------EEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEeccc
Confidence                                          12234688899999999999999999999999999999988777766554


Q ss_pred             cc------EEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEe-CCCeEEEEeCCCCceeeeec
Q psy12697        447 KE------IYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAG-VDKTTIIWDAASGQCEQQFS  519 (602)
Q Consensus       447 ~~------i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~  519 (602)
                      ..      +....|+|                       ...+..+.+++++..++.++ .++.|++||..+++.+..+.
T Consensus       339 ~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~  395 (435)
T 4e54_B          339 HRHFQHLTPIKAAWHP-----------------------RYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLY  395 (435)
T ss_dssp             CCCCSSSCCCBCEECS-----------------------SSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEEC
T ss_pred             ccccccceeEEEEEcC-----------------------CCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEe
Confidence            32      11122222                       23344556666666555444 34679999999999987764


Q ss_pred             -ccCCCeeEe-eecCCc-eEEEeeCCCcEEEeecCCCCc
Q psy12697        520 -FHSAPALDV-DWQSNT-SFASCSTDQHIHVCKLHSDKP  555 (602)
Q Consensus       520 -~~~~~v~~~-~~s~~~-~l~~~~~d~~i~iw~~~~~~~  555 (602)
                       .|...|.++ +|+|+| +|++| .|+.|+||+++++++
T Consensus       396 ~~~~~~v~s~~~fspdg~~lasg-~d~~i~iW~~~~gk~  433 (435)
T 4e54_B          396 DPESSGISSLNEFNPMGDTLASA-MGYHILIWSQQEART  433 (435)
T ss_dssp             CSSCCCCCCEEEECTTSSCEEEE-CSSEEEECCCC----
T ss_pred             CCCCCcEEEEEEECCCCCEEEEE-cCCcEEEEECCcCee
Confidence             678888887 699999 77765 488999999987764

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.1e-41  Score=340.12  Aligned_cols=339  Identities=12%  Similarity=0.142  Sum_probs=243.2

Q ss_pred             cCCceEEEEECCCC---------CeEEE-------------------eeCCceEEEEecCCceeEEEeeccCceEEEEeC
Q psy12697        139 HTEPVYSVAFSPDG---------KFLAS-------------------GSFDKCVHIWSARTGQLVHSYKGTGGIFEVCWN  190 (602)
Q Consensus       139 h~~~V~~~~~s~d~---------~~l~s-------------------~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~  190 (602)
                      +.+.|.+|+|+|++         ++||+                   ++.|++|+|||+.+++.....            
T Consensus       132 ~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd~~~~~~~~~~------------  199 (524)
T 2j04_B          132 VGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTSTLHCVK------------  199 (524)
T ss_dssp             CCC--CCCSCEEECCCCSSCSSEEEEEEEEEC------------------CEEEEEEEEETTTCCEEE------------
T ss_pred             CCCceeEEEecccCCCCccCcCCeEEEEEEecccCCccchhhhhhccCCCCceEEEEEccCCCCCceE------------
Confidence            56677777777765         55555                   557899999998876532110            


Q ss_pred             CCCCCCCCCCCccccccccccCCcceEeeCCCcceEEEEEcCC------CCEEEEeeCCCcEEEEeCCCCCCCCCccceE
Q psy12697        191 SRGTPPNPPESMEVDASIEIPQSKATKLIGHESEVFICAWNPV------KDFLASGSGDSTARIWDMTDSTKKDPKELQI  264 (602)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~------~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~  264 (602)
                                              ...+.+|.+.|.+++|+|+      +.+||+++.||+|++||+..+........  
T Consensus       200 ------------------------~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~--  253 (524)
T 2j04_B          200 ------------------------VQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFK--  253 (524)
T ss_dssp             ------------------------EEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEE--
T ss_pred             ------------------------EEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccce--
Confidence                                    0234567889999999997      57999999999999999987643211000  


Q ss_pred             EEEEEecCCCcccCCCCceeEEeeCCCCCeEEEEeCCCeEEEEcCCC--cceeecccccCCeEEE--EEccCC-CEEEEE
Q psy12697        265 VLRHCISKGGTEVPSNKDVTSLDWNNNGSFLATGSYDGYARIWTSDG--SLKSTLGQHKGPIFAL--KWNKRG-NYILSA  339 (602)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~--~~~~~~~~~~~~i~~~--~~~~~~-~~l~~~  339 (602)
                         ....+......|...|++++|++++ .|++|+.||.|++||++.  .....+..|...|.++  .|+|++ ++|+++
T Consensus       254 ---~~~~p~~~l~~h~~~v~sv~~s~~~-~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~  329 (524)
T 2j04_B          254 ---MCEKPSLTLSLADSLITTFDFLSPT-TVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTV  329 (524)
T ss_dssp             ---CCCSCSEEECCTTTCEEEEEESSSS-EEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEE
T ss_pred             ---eecCceEEEEcCCCCEEEEEecCCC-eEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEe
Confidence               0000001123467889999999864 899999999999999873  3345678899999999  578887 899999


Q ss_pred             ecCCcEEEEeCCCCceeEEeeeccC--CeeeeeccCC-CeEEEeeCCCeEEEEEcCCCceeeEeccCCCCeEEEEECCCC
Q psy12697        340 GVDKTTIIWDAASGQCEQQFSFHSA--PALDVDWQSN-TSFASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQG  416 (602)
Q Consensus       340 ~~dg~i~~wd~~~~~~~~~~~~~~~--~~~~~~~~~~-~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~  416 (602)
                      +.|++|++||++++++...+..+..  .+.+++|+|+ ..+++++.|+.|++||++++..+..+.+|.+.|++++|+|++
T Consensus       330 S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g  409 (524)
T 2j04_B          330 AVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLH  409 (524)
T ss_dssp             ETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSC
T ss_pred             ccCCeEEEEECCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeecCCCceEEEEeCCCC
Confidence            9999999999999888777766543  4788999996 468888999999999999999888899999999999999999


Q ss_pred             CEEEEEECCCeEEEEeCCCCeeeEeeccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEE
Q psy12697        417 LLLASCSDDMTLKIWSLDKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYIL  496 (602)
Q Consensus       417 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~  496 (602)
                      ++|++|+.||+|++||+..+ .+........                             ..+...+..++|+|+++.+.
T Consensus       410 ~~l~Sgs~Dgtv~lwd~~~~-~~~~~~~~~~-----------------------------~~~~~~v~~v~~sp~g~~~~  459 (524)
T 2j04_B          410 PMVLAGSADGSLIITNAARR-LLHGIKNSSA-----------------------------TQKSLRLWKWDYSIKDDKYR  459 (524)
T ss_dssp             CBCEEEETTTEEECCBSCSS-TTTCC-----------------------------------CCCCEEEECBCCSSSCEEE
T ss_pred             CeEEEEECCCEEEEEechHh-hccccccCcc-----------------------------ceeeeEEEEeccCCCCCeEE
Confidence            99999999999999998643 1111110000                             00122456788888888552


Q ss_pred             EEeCCCeEEEEeCC-CCceeeeecccCCCeeEeeecCCc----eEEEeeCCCcEEEeecCC
Q psy12697        497 SAGVDKTTIIWDAA-SGQCEQQFSFHSAPALDVDWQSNT----SFASCSTDQHIHVCKLHS  552 (602)
Q Consensus       497 s~~~dg~i~iwd~~-~~~~~~~~~~~~~~v~~~~~s~~~----~l~~~~~d~~i~iw~~~~  552 (602)
                       ...  .+.+|+.. ++.++..+.+|...|.+++|+|++    .+|+|+.||.|+||++.-
T Consensus       460 -~~~--~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~l~~  517 (524)
T 2j04_B          460 -IDS--SYEVYPLTVNDVSKAKIDAHGINITCTKWNETSAGGKCYAFSNSAGLLTLEYLSL  517 (524)
T ss_dssp             -ECC--CCCCCC-------------CCCSCCCEEECCSTTTTTEEEEECTTSEEEEEECSC
T ss_pred             -ccC--CceecccccCCcceeeecCCCceEEEEECCCCCCccHHHHhhccCceEEEEEccc
Confidence             222  24455443 577888899999999999999994    799999999999999854

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=1.9e-39  Score=327.20  Aligned_cols=320  Identities=21%  Similarity=0.346  Sum_probs=271.1

Q ss_pred             eeeeeeeccCCce-EEEEECCCCCeEEEeeCCceEEEEecCCceeEEEeeccCceEEEEeCCCCCCCCCCCCcccccccc
Q psy12697        131 ECLNTLTRHTEPV-YSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKGTGGIFEVCWNSRGTPPNPPESMEVDASIE  209 (602)
Q Consensus       131 ~~~~~l~~h~~~V-~~~~~s~d~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (602)
                      .....+.+|...| .++.|  ++++|++|+.||+|++||+.+++.+.                                 
T Consensus       112 ~~~~~l~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~~~~---------------------------------  156 (464)
T 3v7d_B          112 PQRTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLL---------------------------------  156 (464)
T ss_dssp             CEEEEEECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTTTEEEE---------------------------------
T ss_pred             cceEEEcCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCCcEEE---------------------------------
Confidence            4567899999885 66665  57899999999999999999998774                                 


Q ss_pred             ccCCcceEeeCCCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEeeC
Q psy12697        210 IPQSKATKLIGHESEVFICAWNPVKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWN  289 (602)
Q Consensus       210 ~~~~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  289 (602)
                             .+.+|...|.+++|+|++ +|++++.||+|++||+.++....                ....|...|.+++|+
T Consensus       157 -------~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~----------------~~~~h~~~v~~l~~~  212 (464)
T 3v7d_B          157 -------QLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCTH----------------VFEGHNSTVRCLDIV  212 (464)
T ss_dssp             -------EECCCSSCEEEEEECSTT-EEEEEETTSCEEEEETTTTEEEE----------------EECCCSSCEEEEEEE
T ss_pred             -------EEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCCCcEEE----------------EECCCCCccEEEEEe
Confidence                   445799999999999988 99999999999999998764211                112357889999998


Q ss_pred             --CCCCeEEEEeCCCeEEEEcCCCcc------------------------eeecccccCCeEEEEEccCCCEEEEEecCC
Q psy12697        290 --NNGSFLATGSYDGYARIWTSDGSL------------------------KSTLGQHKGPIFALKWNKRGNYILSAGVDK  343 (602)
Q Consensus       290 --~~~~~l~~~~~dg~i~i~~~~~~~------------------------~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg  343 (602)
                        ++++++++|+.||.|++||+....                        ...+.+|...+.++  +++++++++++.||
T Consensus       213 ~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~~d~  290 (464)
T 3v7d_B          213 EYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--SGHGNIVVSGSYDN  290 (464)
T ss_dssp             ESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEE--EEETTEEEEEETTS
T ss_pred             cCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEE--cCCCCEEEEEeCCC
Confidence              578999999999999999977432                        44567788888877  57789999999999


Q ss_pred             cEEEEeCCCCceeEEeeeccCCeeeeeccCC-CeEEEeeCCCeEEEEEcCCCceeeEeccCCCCeEEEEECCCCCEEEEE
Q psy12697        344 TTIIWDAASGQCEQQFSFHSAPALDVDWQSN-TSFASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASC  422 (602)
Q Consensus       344 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~  422 (602)
                      .|++||+++++.+..+..|...+.++.|+++ ..+++++.||.|++||+.+++++..+.+|...|.+++|+  +++|+++
T Consensus       291 ~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~  368 (464)
T 3v7d_B          291 TLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLS--DKFLVSA  368 (464)
T ss_dssp             CEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEC--SSEEEEE
T ss_pred             eEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCcEEEEEEc--CCEEEEE
Confidence            9999999999999999999999999999987 568999999999999999999999999999999999998  5799999


Q ss_pred             ECCCeEEEEeCCCCeeeEeeccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCCC
Q psy12697        423 SDDMTLKIWSLDKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDK  502 (602)
Q Consensus       423 ~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg  502 (602)
                      +.||.|++||+.++.......                                   +...+..++|+|+++++++++ ||
T Consensus       369 s~dg~v~vwd~~~~~~~~~~~-----------------------------------~~~~~~~~~~~~~~~~l~~~~-dg  412 (464)
T 3v7d_B          369 AADGSIRGWDANDYSRKFSYH-----------------------------------HTNLSAITTFYVSDNILVSGS-EN  412 (464)
T ss_dssp             ETTSEEEEEETTTCCEEEEEE-----------------------------------CTTCCCEEEEEECSSEEEEEE-TT
T ss_pred             eCCCcEEEEECCCCceeeeec-----------------------------------CCCCccEEEEEeCCCEEEEec-CC
Confidence            999999999998866543331                                   344566788899999999998 89


Q ss_pred             eEEEEeCCCCceeee-ecccCCCeeEeeecCCceEEEeeCCCcEEEee
Q psy12697        503 TTIIWDAASGQCEQQ-FSFHSAPALDVDWQSNTSFASCSTDQHIHVCK  549 (602)
Q Consensus       503 ~i~iwd~~~~~~~~~-~~~~~~~v~~~~~s~~~~l~~~~~d~~i~iw~  549 (602)
                      .|++||+.+++++.. +..|...|.+++|+++..+++++.||.+.+|-
T Consensus       413 ~i~iwd~~~g~~~~~~~~~~~~~v~~v~~~~~~l~~~~~~~g~~~i~~  460 (464)
T 3v7d_B          413 QFNIYNLRSGKLVHANILKDADQIWSVNFKGKTLVAAVEKDGQSFLEI  460 (464)
T ss_dssp             EEEEEETTTCCEEESCTTTTCSEEEEEEEETTEEEEEEEETTEEEEEE
T ss_pred             eEEEEECCCCcEEehhhccCCCcEEEEEecCCEEEEEEEeCCeEEEEE
Confidence            999999999999875 66789999999998444667777777766554

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.3e-41  Score=331.04  Aligned_cols=316  Identities=8%  Similarity=0.087  Sum_probs=251.5

Q ss_pred             eccCCceEEEEECCCCCeEEEeeCCceEEEEecCCceeEEEeeccCceEEEEeCCCCCCCCCCCCccccccccccCCcce
Q psy12697        137 TRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKGTGGIFEVCWNSRGTPPNPPESMEVDASIEIPQSKAT  216 (602)
Q Consensus       137 ~~h~~~V~~~~~s~d~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  216 (602)
                      +.-...|.+++|||||+++||++.|++|+  |...++                                           
T Consensus        12 ~~~~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~-------------------------------------------   46 (588)
T 2j04_A           12 KEFEDWKNNLTWARDGTLYLTTFPDISIG--QPKYAK-------------------------------------------   46 (588)
T ss_dssp             CCCSSSSCCEEECTTSCEEEECSSSEEEE--EECCCS-------------------------------------------
T ss_pred             hHhhccEEEEEECCCCCEEEEEcCCceee--cccccc-------------------------------------------
Confidence            34568899999999999999999999999  643332                                           


Q ss_pred             EeeCCCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEeeCCCCCeEE
Q psy12697        217 KLIGHESEVFICAWNPVKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFLA  296 (602)
Q Consensus       217 ~l~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~  296 (602)
                      .+.+|...|++++|+|+|       .++.+.+|+.+....   ..               ..+...|.+++|+|+|++||
T Consensus        47 ~l~gh~~~v~~V~FsPdg-------~~~~~~~~~~~~~~~---~~---------------~~~~~~V~~vawSPdG~~LA  101 (588)
T 2j04_A           47 DINCNSKNLFHVKEFPLE-------FENKLDFELAQQNGL---LN---------------SQPVCYPRVCKPSPIDDWMA  101 (588)
T ss_dssp             CCSSBGGGTEEEEEECCC-------CCCTTTTSCCCSSCS---ST---------------TSCSCCEEEEEECSSSSCEE
T ss_pred             eecCCCccEEEEEECCCC-------CcceEEEEeCCCceE---ee---------------cCCCCcEEEEEECCCCCEEE
Confidence            225799999999999998       455555555432221   11               12257799999999999999


Q ss_pred             EEeCCCeEEEEcCCCcceeecccccC-----CeEEEEEccCCCEEEEEecCCcEEEEeCCCCce-------eEEe----e
Q psy12697        297 TGSYDGYARIWTSDGSLKSTLGQHKG-----PIFALKWNKRGNYILSAGVDKTTIIWDAASGQC-------EQQF----S  360 (602)
Q Consensus       297 ~~~~dg~i~i~~~~~~~~~~~~~~~~-----~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~-------~~~~----~  360 (602)
                      +++.||.|++|+.++ ....+. |..     .+.+++|||+|++|++|+.||+|++||+.++..       +..+    .
T Consensus       102 s~s~dg~V~iwd~~~-~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~  179 (588)
T 2j04_A          102 VLSNNGNVSVFKDNK-MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDA  179 (588)
T ss_dssp             EEETTSCEEEEETTE-EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCT
T ss_pred             EEeCCCcEEEEeCCc-eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccc
Confidence            999999999999766 555556 665     499999999999999999999999999998863       4555    4


Q ss_pred             eccCCeeeeeccCCCeEEEeeCCCeEEEEEcCCCce---eeEe-ccCCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCC
Q psy12697        361 FHSAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKP---VKSF-EGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKD  436 (602)
Q Consensus       361 ~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~---~~~~-~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~  436 (602)
                      +|...|.+++|+|++ +++++.|+.+++||+.+++.   ..++ .+|...|.+++|+  ++.||+++ ++.|++||+.++
T Consensus       180 gh~~~V~sVawSPdg-Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFs--g~~LASa~-~~tIkLWd~~~~  255 (588)
T 2j04_A          180 GSKDWVTHIVWYEDV-LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIV--DYKVVLTC-PGYVHKIDLKNY  255 (588)
T ss_dssp             TCCCCEEEEEEETTE-EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEE--TTEEEEEC-SSEEEEEETTTT
T ss_pred             cccccEEEEEEcCCc-EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEEE--CCEEEEEe-CCeEEEEECCCC
Confidence            566799999999999 99999999999999988773   3456 4788999999999  68999997 699999999987


Q ss_pred             eeeEeeccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEE--ccCCCEEEEEeCCCeEEEEeCCCCce
Q psy12697        437 NCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKW--NKRGNYILSAGVDKTTIIWDAASGQC  514 (602)
Q Consensus       437 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~--s~~~~~l~s~~~dg~i~iwd~~~~~~  514 (602)
                      +......+                                  |...|..++|  +||+..|++++.||+ ++|...    
T Consensus       256 ~~~~~~~g----------------------------------h~~~V~~va~~~s~d~~~La~a~edG~-klw~~d----  296 (588)
T 2j04_A          256 SISSLKTG----------------------------------SLENFHIIPLNHEKESTILLMSNKTSY-KVLLED----  296 (588)
T ss_dssp             EEEEEECS----------------------------------CCSCCCEEEETTCSSCEEEEECSSCEE-EEEESS----
T ss_pred             eEEEEEcC----------------------------------CCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeec----
Confidence            66333223                                  5566677777  778889999999999 999977    


Q ss_pred             eeeecccCCCeeEeeecCCc-eEEEeeCCCcEEEeecCCCCceeeeecccccceEEEEecCCcEEEEEECCCCCeEEEec
Q psy12697        515 EQQFSFHSAPALDVDWQSNT-SFASCSTDQHIHVCKLHSDKPVKSFEGHTTGQLVHSYKGTGGIFEVCWNSRGDKVGASA  593 (602)
Q Consensus       515 ~~~~~~~~~~v~~~~~s~~~-~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~  593 (602)
                                  .+.++||+ .+++.  |+++++|+...+. +..+++            ...|.+++|||||+.+|+++
T Consensus       297 ------------~~~~spd~~l~a~~--d~~v~lW~~~g~~-l~~~~~------------~~~I~~va~SPdG~~lA~~~  349 (588)
T 2j04_A          297 ------------ELHVTADNIIAPYL--EKKFKKWSTIWNE-FNNYET------------TLVIHGISLSPDGYSIAIVY  349 (588)
T ss_dssp             ------------SEEEECCCSSHHHH--HHHHHHTTTTTTS-SSSSCC------------EEEEEEEEECTTSSEEEEEE
T ss_pred             ------------cEEECCCceEEEEc--CCEEEEEECCCCc-eeeecc------------ceEEEEEEECCCCCEEEEEE
Confidence                        26699999 55553  9999999975443 333322            24599999999999999987


Q ss_pred             c
Q psy12697        594 S  594 (602)
Q Consensus       594 ~  594 (602)
                      .
T Consensus       350 ~  350 (588)
T 2j04_A          350 D  350 (588)
T ss_dssp             E
T ss_pred             e
Confidence            5

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=3.1e-39  Score=311.08  Aligned_cols=289  Identities=21%  Similarity=0.330  Sum_probs=232.4

Q ss_pred             cCCCCceeEEee-----CC-CCCeEEEEeCCCeEEEEcCCC--------cceeecccccCCeEEEEEccCCCEEEEEecC
Q psy12697        277 VPSNKDVTSLDW-----NN-NGSFLATGSYDGYARIWTSDG--------SLKSTLGQHKGPIFALKWNKRGNYILSAGVD  342 (602)
Q Consensus       277 ~~~~~~i~~~~~-----~~-~~~~l~~~~~dg~i~i~~~~~--------~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d  342 (602)
                      ..|...|++++|     ++ ++++|++|+.|+.|++||+..        .....+.+|...|.+++|+|++.++++++.|
T Consensus        18 ~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~s~D   97 (343)
T 2xzm_R           18 EGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWD   97 (343)
T ss_dssp             ECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEEEEETT
T ss_pred             ccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEEEEcCC
Confidence            356789999999     76 899999999999999999753        2355678999999999999999999999999


Q ss_pred             CcEEEEeCCCCceeEEeeeccCCeeeeeccCCC-eEEEeeCCCeEEEEEcCCCceeeE--eccCCCCeEEEEECCCC---
Q psy12697        343 KTTIIWDAASGQCEQQFSFHSAPALDVDWQSNT-SFASCSTDQHIHVCKLHSDKPVKS--FEGHTNEVNAIKWDPQG---  416 (602)
Q Consensus       343 g~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~i~d~~~~~~~~~--~~~~~~~i~~~~~~~~~---  416 (602)
                      ++|++||+++++....+..|...+.+++|+|++ .+++++.|+.|++||+........  ..+|...|.+++|+|++   
T Consensus        98 ~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  177 (343)
T 2xzm_R           98 KTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSPIMKSA  177 (343)
T ss_dssp             SEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCEEEECCTTTSCSSCEEEEEECCCCCSC
T ss_pred             CcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCceeeeecccCCCceeeeeeeccccccc
Confidence            999999999999999999999999999999985 688999999999999984432222  23688899999999987   


Q ss_pred             -------CEEEEEECCCeEEEEeCCCCeeeEeeccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEc
Q psy12697        417 -------LLLASCSDDMTLKIWSLDKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWN  489 (602)
Q Consensus       417 -------~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s  489 (602)
                             .+|++++.||.|++||. ..+....+.                                  +|...|.+++|+
T Consensus       178 ~~~~~~~~~l~s~~~d~~i~iwd~-~~~~~~~~~----------------------------------~h~~~v~~~~~s  222 (343)
T 2xzm_R          178 NKVQPFAPYFASVGWDGRLKVWNT-NFQIRYTFK----------------------------------AHESNVNHLSIS  222 (343)
T ss_dssp             SCCCSSCCEEEEEETTSEEEEEET-TTEEEEEEE----------------------------------CCSSCEEEEEEC
T ss_pred             cccCCCCCEEEEEcCCCEEEEEcC-CCceeEEEc----------------------------------CccccceEEEEC
Confidence                   79999999999999994 344444433                                  366677788888


Q ss_pred             cCCCEEEEEeCCCeEEEEeCCC-CceeeeecccCCCeeEeeecCCceEEEeeCCCcEEEeecCCCCcee--eeecccccc
Q psy12697        490 KRGNYILSAGVDKTTIIWDAAS-GQCEQQFSFHSAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVK--SFEGHTTGQ  566 (602)
Q Consensus       490 ~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~v~~~~~s~~~~l~~~~~d~~i~iw~~~~~~~~~--~~~~~~~~~  566 (602)
                      |+|++|++|+.||.|++||+.+ ......+. +...|.+++|+|++.+++++.|+.|++|++.+++...  .+.......
T Consensus       223 ~~g~~l~sgs~dg~v~iwd~~~~~~~~~~~~-~~~~v~~v~~sp~~~~la~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~  301 (343)
T 2xzm_R          223 PNGKYIATGGKDKKLLIWDILNLTYPQREFD-AGSTINQIAFNPKLQWVAVGTDQGVKIFNLMTQSKAPVCTIEAEPITK  301 (343)
T ss_dssp             TTSSEEEEEETTCEEEEEESSCCSSCSEEEE-CSSCEEEEEECSSSCEEEEEESSCEEEEESSSCCSCSEEECCCCSGGG
T ss_pred             CCCCEEEEEcCCCeEEEEECCCCcccceeec-CCCcEEEEEECCCCCEEEEECCCCEEEEEeCCCCCCceEEeecCcchh
Confidence            8999999999999999999954 44444443 5667999999999955567778999999998876544  333111000


Q ss_pred             eEEEEecCCcEEEEEECCCCCeEEEeccCCeEEee
Q psy12697        567 LVHSYKGTGGIFEVCWNSRGDKVGASASDGSVFKN  601 (602)
Q Consensus       567 ~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~v~i~  601 (602)
                      ......+...|.+++|+|+|++|++|+.||.|++.
T Consensus       302 ~~~~~~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w  336 (343)
T 2xzm_R          302 AEGQKGKNPQCTSLAWNALGKKLFAGFTDGVIRTF  336 (343)
T ss_dssp             BTTBCCSCCCEEEEEECSSSCCEEEEETTSEEEEE
T ss_pred             hhhhcCCCCceEEEEECCCCCeEEEecCCceEEEE
Confidence            00000123679999999999999999999999874

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.7e-39  Score=310.73  Aligned_cols=277  Identities=24%  Similarity=0.377  Sum_probs=221.1

Q ss_pred             CCCCceeEEeeCCCCCeEEEEeCCCeEEEEcCCC---cceeec-cc-ccCCeEEEEEccCCCEEEEEecCCcEEEEeCCC
Q psy12697        278 PSNKDVTSLDWNNNGSFLATGSYDGYARIWTSDG---SLKSTL-GQ-HKGPIFALKWNKRGNYILSAGVDKTTIIWDAAS  352 (602)
Q Consensus       278 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~---~~~~~~-~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~  352 (602)
                      .|...|.+++|+|+  +|++|+.|+.|++|++..   .....+ .. |...|.+++|+|++++|++++.|++|++||+..
T Consensus        12 ~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~   89 (330)
T 2hes_X           12 LYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEE   89 (330)
T ss_dssp             CCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEEEEEC--
T ss_pred             cCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEEEEEccc
Confidence            46789999999988  999999999999999874   233344 34 999999999999999999999999999999853


Q ss_pred             -------CceeEEeeeccCCeeeeeccCCC-eEEEeeCCCeEEEEEcCCC----ceeeEeccCCCCeEEEEECCCCCEEE
Q psy12697        353 -------GQCEQQFSFHSAPALDVDWQSNT-SFASCSTDQHIHVCKLHSD----KPVKSFEGHTNEVNAIKWDPQGLLLA  420 (602)
Q Consensus       353 -------~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~i~d~~~~----~~~~~~~~~~~~i~~~~~~~~~~~l~  420 (602)
                             .+....+..|...+.+++|+|++ .+++++.|+.|++||+...    +.+..+.+|...|.+++|+|++++|+
T Consensus        90 ~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~  169 (330)
T 2hes_X           90 SADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLA  169 (330)
T ss_dssp             -----CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSSEEE
T ss_pred             CcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCCEEE
Confidence                   34566778899999999999985 5889999999999999532    45678899999999999999999999


Q ss_pred             EEECCCeEEEEeCCCC--eeeEeeccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccC--CCEEE
Q psy12697        421 SCSDDMTLKIWSLDKD--NCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKR--GNYIL  496 (602)
Q Consensus       421 ~~~~dg~i~iwd~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~--~~~l~  496 (602)
                      +++.|+.|++||..++  +++..+.+                                  |...|.+++|+|+  +.+|+
T Consensus       170 s~s~D~~i~iW~~~~~~~~~~~~~~~----------------------------------h~~~v~~~~~~~~~~~~~l~  215 (330)
T 2hes_X          170 SSSYDDTVRIWKDYDDDWECVAVLNG----------------------------------HEGTVWSSDFDKTEGVFRLC  215 (330)
T ss_dssp             EEETTSCEEEEEEETTEEEEEEEECC----------------------------------CSSCEEEEEECCSSSSCEEE
T ss_pred             EEcCCCeEEEEECCCCCeeEEEEccC----------------------------------CCCcEEEEEecCCCCeeEEE
Confidence            9999999999998765  44455544                                  5555666666666  67899


Q ss_pred             EEeCCCeEEEEeCCCC--------ceeeeecc-cCCCeeEeeecCCceEEEeeCCCcEEEeecCCCC--ceeee-ecccc
Q psy12697        497 SAGVDKTTIIWDAASG--------QCEQQFSF-HSAPALDVDWQSNTSFASCSTDQHIHVCKLHSDK--PVKSF-EGHTT  564 (602)
Q Consensus       497 s~~~dg~i~iwd~~~~--------~~~~~~~~-~~~~v~~~~~s~~~~l~~~~~d~~i~iw~~~~~~--~~~~~-~~~~~  564 (602)
                      +++.|++|++||+.++        .+...+.. |...|.+++|++++.|++++.||.|++|+..+++  ..... .+|  
T Consensus       216 s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h--  293 (330)
T 2hes_X          216 SGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNGLIASVGADGVLAVYEEVDGEWKVFAKRALCH--  293 (330)
T ss_dssp             EEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTSCEEEEETTSCEEEEEEETTEEEEEEEESCTT--
T ss_pred             EEeCCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCCEEEEEeCCCEEEEEEcCCCceEEEecccccc--
Confidence            9999999999998765        34455554 8999999999988899999999999999986653  11111 122  


Q ss_pred             cceEEEEecCC-cEEEEEECC--CCCeEEEeccCCeEEee
Q psy12697        565 GQLVHSYKGTG-GIFEVCWNS--RGDKVGASASDGSVFKN  601 (602)
Q Consensus       565 ~~~~~~~~~~~-~i~~l~~sp--dg~~l~~~~~dg~v~i~  601 (602)
                               .. .|.+++|+|  ++++||+++.||+|+|+
T Consensus       294 ---------~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W  324 (330)
T 2hes_X          294 ---------GVYEINVVKWLELNGKTILATGGDDGIVNFW  324 (330)
T ss_dssp             ---------TTSCEEEEEEC-----CCEEEEETTSEEEEE
T ss_pred             ---------ccceEEEEEEecCCCceEEEEecCCCcEEEE
Confidence                     23 799999999  78999999999999885

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=2.4e-39  Score=306.00  Aligned_cols=273  Identities=21%  Similarity=0.354  Sum_probs=224.0

Q ss_pred             CCcccCCcceeccceeeeecccceeeeeeeccCCceEEEEECCCCCeEEEeeCCceEEEEecCCceeEEEeeccCceEEE
Q psy12697        108 GPAITNGEEVHRLTLPLWDVERGECLNTLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKGTGGIFEV  187 (602)
Q Consensus       108 ~~~~~~~~~~~~~~i~vwd~~~~~~~~~l~~h~~~V~~~~~s~d~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~  187 (602)
                      ++.++.+.  .+++|+|||+++++.++.+.+|..+|.+++|+|++++|++|+.|++|++||+.+++.+.           
T Consensus        25 ~~~l~s~~--~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~-----------   91 (304)
T 2ynn_A           25 EPWVLTTL--YSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVV-----------   91 (304)
T ss_dssp             SSEEEEEE--TTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEE-----------
T ss_pred             CCEEEEEc--CCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEECCCCcEEE-----------
Confidence            44444433  46899999999999999999999999999999999999999999999999999998774           


Q ss_pred             EeCCCCCCCCCCCCccccccccccCCcceEeeCCCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCccceEEEE
Q psy12697        188 CWNSRGTPPNPPESMEVDASIEIPQSKATKLIGHESEVFICAWNPVKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLR  267 (602)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~  267 (602)
                                                   .+.+|...|.+++|+|++++|++++.|++|++||+.++..           
T Consensus        92 -----------------------------~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~-----------  131 (304)
T 2ynn_A           92 -----------------------------DFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWA-----------  131 (304)
T ss_dssp             -----------------------------EEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTE-----------
T ss_pred             -----------------------------EEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcc-----------
Confidence                                         4557999999999999999999999999999999854310           


Q ss_pred             EEecCCCcccCCCCceeEEeeCCCCCeEEEEeCCCeEEEEcCCCcceeecccccCCeEEEEEcc-CCCEEEEEecCCcEE
Q psy12697        268 HCISKGGTEVPSNKDVTSLDWNNNGSFLATGSYDGYARIWTSDGSLKSTLGQHKGPIFALKWNK-RGNYILSAGVDKTTI  346 (602)
Q Consensus       268 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~  346 (602)
                                                                   ....+.+|...|.+++|+| ++..|++++.|++|+
T Consensus       132 ---------------------------------------------~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~  166 (304)
T 2ynn_A          132 ---------------------------------------------LEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVK  166 (304)
T ss_dssp             ---------------------------------------------EEEEECCCCSCEEEEEECTTCTTEEEEEETTSEEE
T ss_pred             ---------------------------------------------hhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEE
Confidence                                                         1123446888899999998 678899999999999


Q ss_pred             EEeCCCCceeEEeeeccCCeeeeeccCCCeEEEeeCCCeEEEEEcCCCceeeEeccCCCCeEEEEECC--CCCEEEEEEC
Q psy12697        347 IWDAASGQCEQQFSFHSAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDP--QGLLLASCSD  424 (602)
Q Consensus       347 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~--~~~~l~~~~~  424 (602)
                      +||++++.....+                                        ..+|...+..++|+|  ++++|++++.
T Consensus       167 iwd~~~~~~~~~~----------------------------------------~~~~~~~v~~~~~~~~~~~~~l~s~s~  206 (304)
T 2ynn_A          167 VWSLGQSTPNFTL----------------------------------------TTGQERGVNYVDYYPLPDKPYMITASD  206 (304)
T ss_dssp             EEETTCSSCSEEE----------------------------------------ECCCTTCEEEEEECCSTTCCEEEEEET
T ss_pred             EEECCCCCcccee----------------------------------------ccCCcCcEEEEEEEEcCCCCEEEEEcC
Confidence            9998765432211                                        123556688888876  7789999999


Q ss_pred             CCeEEEEeCCCCeeeEeeccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCCCeE
Q psy12697        425 DMTLKIWSLDKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTT  504 (602)
Q Consensus       425 dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i  504 (602)
                      |+.|++||+++++++.++.+|                                  ...|.+++|+|++++|++|+.||.|
T Consensus       207 D~~i~iWd~~~~~~~~~~~~h----------------------------------~~~v~~~~~~p~~~~l~s~s~Dg~i  252 (304)
T 2ynn_A          207 DLTIKIWDYQTKSCVATLEGH----------------------------------MSNVSFAVFHPTLPIIISGSEDGTL  252 (304)
T ss_dssp             TSEEEEEETTTTEEEEEEECC----------------------------------SSCEEEEEECSSSSEEEEEETTSCE
T ss_pred             CCeEEEEeCCCCccceeeCCC----------------------------------CCCEEEEEECCCCCEEEEEcCCCeE
Confidence            999999999999888877665                                  4455666666788899999999999


Q ss_pred             EEEeCCCCceeeeecccCCCeeEeeecCCc--eEEEeeCCCcEEEeecCC
Q psy12697        505 IIWDAASGQCEQQFSFHSAPALDVDWQSNT--SFASCSTDQHIHVCKLHS  552 (602)
Q Consensus       505 ~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~--~l~~~~~d~~i~iw~~~~  552 (602)
                      ++||+.+++++..+..|...+.+++|+|++  .+++++.|+.+.+|++.+
T Consensus       253 ~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asg~~~g~~~~~~~~  302 (304)
T 2ynn_A          253 KIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGN  302 (304)
T ss_dssp             EEEETTTCCEEEEECCSSSSEEEEEECTTCGGGCEEEEETTEEEEEECC-
T ss_pred             EEEECCCCceeeeccCCCccEEEEEECCCCCceEEEEecCCceEEEEecc
Confidence            999999999999999999999999999987  334455566688888754

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=100.00  E-value=4.7e-40  Score=326.01  Aligned_cols=343  Identities=18%  Similarity=0.229  Sum_probs=259.7

Q ss_pred             ccceeeeecccceeeeeeeccCCceEEEEECC-CCCeEEEeeCCceEEEEecCCceeEEEeeccCceEEEEeCCCCCCCC
Q psy12697        119 RLTLPLWDVERGECLNTLTRHTEPVYSVAFSP-DGKFLASGSFDKCVHIWSARTGQLVHSYKGTGGIFEVCWNSRGTPPN  197 (602)
Q Consensus       119 ~~~i~vwd~~~~~~~~~l~~h~~~V~~~~~s~-d~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  197 (602)
                      +.++++|+++.++....+.+|.+.|++++|+| ++++||+++.||.|++||+.+++....+......             
T Consensus        22 ~~~~~v~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~-------------   88 (408)
T 4a11_B           22 ESTRRVLGLELNKDRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVC-------------   88 (408)
T ss_dssp             HHHHHHHTEEECTTEEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEE-------------
T ss_pred             cCcceeeccccCcceeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccc-------------
Confidence            45789999999999999999999999999999 9999999999999999999987654332210000             


Q ss_pred             CCCCccccccccccCCcceEeeCCCcceEEEEEcC-CCCEEEEeeCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcc
Q psy12697        198 PPESMEVDASIEIPQSKATKLIGHESEVFICAWNP-VKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTE  276 (602)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~-~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (602)
                                    ........+|...|.+++|+| ++.+|++++.||.|++||+.++....      .           
T Consensus        89 --------------~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~------~-----------  137 (408)
T 4a11_B           89 --------------SIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTAD------V-----------  137 (408)
T ss_dssp             --------------EECTTCTTCCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEE------E-----------
T ss_pred             --------------cccccccccCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccce------e-----------
Confidence                          000011235999999999999 77899999999999999998764321      1           


Q ss_pred             cCCCCceeEEeeCCC---CCeEEEEeCCCeEEEEcCC-CcceeecccccCCeEEEEEccCCC-EEEEEecCCcEEEEeCC
Q psy12697        277 VPSNKDVTSLDWNNN---GSFLATGSYDGYARIWTSD-GSLKSTLGQHKGPIFALKWNKRGN-YILSAGVDKTTIIWDAA  351 (602)
Q Consensus       277 ~~~~~~i~~~~~~~~---~~~l~~~~~dg~i~i~~~~-~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~~wd~~  351 (602)
                      ..+...+.++.|+|.   +.++++++.+|.|++||+. +.....+..|...|.+++|+|+++ .+++++.||.|++||++
T Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~  217 (408)
T 4a11_B          138 FNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVR  217 (408)
T ss_dssp             EECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETT
T ss_pred             ccCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECC
Confidence            113567899999884   4599999999999999987 566778888999999999999998 58899999999999998


Q ss_pred             CCc-eeEEeeeccCCeeeeeccCCCeEEEeeCCCeEEEEEcCCCceeeEeccCCCCeEEEEECCCCCEEEEEECCCeEEE
Q psy12697        352 SGQ-CEQQFSFHSAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKI  430 (602)
Q Consensus       352 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i  430 (602)
                      ++. ....+..+...                          ...........|...|.+++|+|++++|++++.||.|++
T Consensus       218 ~~~~~~~~~~~~~~~--------------------------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~v  271 (408)
T 4a11_B          218 RASGCLITLDQHNGK--------------------------KSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRL  271 (408)
T ss_dssp             CSSCCSEECCTTTTC--------------------------SCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred             CCCcccccccccccc--------------------------cceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEE
Confidence            765 23222221111                          011122344578899999999999999999999999999


Q ss_pred             EeCCCCeeeEeeccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCCCeEEEEeCC
Q psy12697        431 WSLDKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAA  510 (602)
Q Consensus       431 wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~~  510 (602)
                      ||+.+++.......+...                             .....+........+..+++++.|+.|++||+.
T Consensus       272 wd~~~~~~~~~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~  322 (408)
T 4a11_B          272 WNSSNGENTLVNYGKVCN-----------------------------NSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVY  322 (408)
T ss_dssp             EETTTCCBCCCCCCCCCC-----------------------------CCSSCCCCEECCSSSSCEEEEEETTEEEEEETT
T ss_pred             EECCCCccceeccccccc-----------------------------cccccceeEEecCCCceEEEEecCCEEEEEECc
Confidence            999988765444322110                             011111112222344567777889999999999


Q ss_pred             CCceeeeecccCCCeeEeeecCCc-eEEEeeCCCcEEEeecCCCCceeeee
Q psy12697        511 SGQCEQQFSFHSAPALDVDWQSNT-SFASCSTDQHIHVCKLHSDKPVKSFE  560 (602)
Q Consensus       511 ~~~~~~~~~~~~~~v~~~~~s~~~-~l~~~~~d~~i~iw~~~~~~~~~~~~  560 (602)
                      +++++..+.+|...|++++|+|++ .|++++.||.|++|++.+++++....
T Consensus       323 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~  373 (408)
T 4a11_B          323 SGEQITMLKGHYKTVDCCVFQSNFQELYSGSRDCNILAWVPSLYEPVPDDD  373 (408)
T ss_dssp             TCCEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEEECC--------
T ss_pred             CCcceeeeccCCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCCCccCCCC
Confidence            999999999999999999999999 99999999999999999887765443

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.6e-39  Score=314.25  Aligned_cols=296  Identities=17%  Similarity=0.306  Sum_probs=254.9

Q ss_pred             eeeeeeeccCCceEEEEECCCCCeEEEeeCCceEEEEecCCceeEEEeeccCceEEEEeCCCCCCCCCCCCccccccccc
Q psy12697        131 ECLNTLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKGTGGIFEVCWNSRGTPPNPPESMEVDASIEI  210 (602)
Q Consensus       131 ~~~~~l~~h~~~V~~~~~s~d~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (602)
                      .....+.+|.+.|++++|+|++++|++++.|+.|++||+.+++.+.                                  
T Consensus        23 ~~~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~----------------------------------   68 (369)
T 3zwl_B           23 MKAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLG----------------------------------   68 (369)
T ss_dssp             EEEEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEE----------------------------------
T ss_pred             cccEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhh----------------------------------
Confidence            4456789999999999999999999999999999999999988774                                  


Q ss_pred             cCCcceEeeCCCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEeeCC
Q psy12697        211 PQSKATKLIGHESEVFICAWNPVKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNN  290 (602)
Q Consensus       211 ~~~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  290 (602)
                            .+.+|...|.+++|+|++++|++++.||.|++||+.+++....                 ..+...+.+++|+|
T Consensus        69 ------~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~-----------------~~~~~~v~~~~~~~  125 (369)
T 3zwl_B           69 ------TLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVAT-----------------WKSPVPVKRVEFSP  125 (369)
T ss_dssp             ------EECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEE-----------------EECSSCEEEEEECT
T ss_pred             ------hhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEE-----------------eecCCCeEEEEEcc
Confidence                  3456999999999999999999999999999999987653211                 11357899999999


Q ss_pred             CCCeEEEEeCC-----CeEEEEcCCCc------------ceeecccccC--CeEEEEEccCCCEEEEEecCCcEEEEeCC
Q psy12697        291 NGSFLATGSYD-----GYARIWTSDGS------------LKSTLGQHKG--PIFALKWNKRGNYILSAGVDKTTIIWDAA  351 (602)
Q Consensus       291 ~~~~l~~~~~d-----g~i~i~~~~~~------------~~~~~~~~~~--~i~~~~~~~~~~~l~~~~~dg~i~~wd~~  351 (602)
                      +++++++++.+     |.|.+|++...            ....+..|..  .+.+++|+|++++|++++.||.|++||++
T Consensus       126 ~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~  205 (369)
T 3zwl_B          126 CGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVS  205 (369)
T ss_dssp             TSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETT
T ss_pred             CCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECC
Confidence            99999999999     99999996522            2334445555  89999999999999999999999999999


Q ss_pred             C-CceeEEeeeccCCeeeeeccCCC-eEEEeeCCCeEEEEEcCCCceeeEeccCCCCeEEEEECCCCCEEEEEECCC---
Q psy12697        352 S-GQCEQQFSFHSAPALDVDWQSNT-SFASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDM---  426 (602)
Q Consensus       352 ~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg---  426 (602)
                      + ++....+..+...+.++.|+|++ .+++++.|+.|++||+.+++.+..+. +...+.+++|+|+++++++++.++   
T Consensus       206 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~  284 (369)
T 3zwl_B          206 NNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYE-TDCPLNTAVITPLKEFIILGGGQEAKD  284 (369)
T ss_dssp             TTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE-CSSCEEEEEECSSSSEEEEEECCC---
T ss_pred             CCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeec-CCCCceeEEecCCCceEEEeecCCCce
Confidence            9 78888889999999999999885 58888999999999999999888887 778899999999999999999988   


Q ss_pred             -----------eEEEEeCCCCeeeEeeccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEE
Q psy12697        427 -----------TLKIWSLDKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYI  495 (602)
Q Consensus       427 -----------~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l  495 (602)
                                 .+++||+.+++.+..+..                                  |...|.+++|+|++++|
T Consensus       285 ~~~~~~~~~~~~i~~~d~~~~~~~~~~~~----------------------------------~~~~v~~~~~s~~~~~l  330 (369)
T 3zwl_B          285 VTTTSANEGKFEARFYHKIFEEEIGRVQG----------------------------------HFGPLNTVAISPQGTSY  330 (369)
T ss_dssp             ----------CEEEEEETTTCCEEEEEEC----------------------------------CSSCEEEEEECTTSSEE
T ss_pred             EEEEecCCCcceeEEEecCCCcchhheec----------------------------------ccCcEEEEEECCCCCEE
Confidence                       899999988887776655                                  45566667777788999


Q ss_pred             EEEeCCCeEEEEeCCCCceeeee
Q psy12697        496 LSAGVDKTTIIWDAASGQCEQQF  518 (602)
Q Consensus       496 ~s~~~dg~i~iwd~~~~~~~~~~  518 (602)
                      ++++.||.|++|+++++.....+
T Consensus       331 ~s~~~dg~v~iw~~~~~~~~~~~  353 (369)
T 3zwl_B          331 ASGGEDGFIRLHHFEKSYFDFKY  353 (369)
T ss_dssp             EEEETTSEEEEEEECHHHHTCCC
T ss_pred             EEEcCCCeEEEEECccccchhHH
Confidence            99999999999999877654443

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=8.5e-39  Score=320.23  Aligned_cols=316  Identities=22%  Similarity=0.412  Sum_probs=270.5

Q ss_pred             ceEeeCCCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEeeCCCCCe
Q psy12697        215 ATKLIGHESEVFICAWNPVKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSF  294 (602)
Q Consensus       215 ~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  294 (602)
                      ...+.+|...|.. ++.+++++|++++.||.|++||+.+++...                ....|...|.+++|+  +++
T Consensus       111 ~~~l~~h~~~v~~-~~~~~g~~l~sg~~dg~i~vwd~~~~~~~~----------------~~~~h~~~v~~~~~~--~~~  171 (445)
T 2ovr_B          111 PKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLR----------------TLVGHTGGVWSSQMR--DNI  171 (445)
T ss_dssp             CEEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEE----------------ECCCCSSCEEEEEEE--TTE
T ss_pred             eEEecccCCCcEE-EEEEcCCEEEEEECCCcEEEEECCCCcEEE----------------EEcCCCCCEEEEEec--CCE
Confidence            4678899987643 355568999999999999999998765321                112457889999997  569


Q ss_pred             EEEEeCCCeEEEEcCC-CcceeecccccCCeEEEEEccCCCEEEEEecCCcEEEEeCCCCceeEEeeeccCCeeeeeccC
Q psy12697        295 LATGSYDGYARIWTSD-GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQS  373 (602)
Q Consensus       295 l~~~~~dg~i~i~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~  373 (602)
                      +++|+.||.|++||.. ++....+..|...|.++.|+  ++.+++++.||.|++||+.+++....+..+...+.++.+ .
T Consensus       172 l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~-~  248 (445)
T 2ovr_B          172 IISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY-D  248 (445)
T ss_dssp             EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE-C
T ss_pred             EEEEeCCCeEEEEECCcCcEEEEECCCCCcEEEEEec--CCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE-C
Confidence            9999999999999986 66777888999999999996  568999999999999999999999999999999999999 5


Q ss_pred             CCeEEEeeCCCeEEEEEcCCCceeeEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeeeEeeccccccEEEEE
Q psy12697        374 NTSFASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHDLQAHNKEIYTIK  453 (602)
Q Consensus       374 ~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~  453 (602)
                      +..+++++.||.|++||+++++.+..+.+|...|.+++|  ++.++++++.||.|++||+++++.+..+..|...+.++.
T Consensus       249 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~  326 (445)
T 2ovr_B          249 GRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGME  326 (445)
T ss_dssp             SSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEE
T ss_pred             CCEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcccEEEEE
Confidence            678999999999999999999999999999999999999  788999999999999999999988887776655544443


Q ss_pred             ECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeeecc---cCCCeeEeee
Q psy12697        454 WSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSF---HSAPALDVDW  530 (602)
Q Consensus       454 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~---~~~~v~~~~~  530 (602)
                                                        +  ++++|++++.||.|++||+.+++++..+..   |..+|.+++|
T Consensus       327 ----------------------------------~--~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~  370 (445)
T 2ovr_B          327 ----------------------------------L--KDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQF  370 (445)
T ss_dssp             ----------------------------------E--ETTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEE
T ss_pred             ----------------------------------E--eCCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEE
Confidence                                              3  456899999999999999999999998886   8889999999


Q ss_pred             cCCceEEEeeCCCcEEEeecCCCCceeeeecccccceEEEEecCCcEEEEEECCCCCeEEEeccCCe
Q psy12697        531 QSNTSFASCSTDQHIHVCKLHSDKPVKSFEGHTTGQLVHSYKGTGGIFEVCWNSRGDKVGASASDGS  597 (602)
Q Consensus       531 s~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~  597 (602)
                      +++ .+++++.||.|++||+.+++.+..+.....+      ...+.|.+++|+|++.+||+++.||+
T Consensus       371 ~~~-~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~------~~~~~v~~~~~s~~~~~la~~~~dg~  430 (445)
T 2ovr_B          371 NKN-FVITSSDDGTVKLWDLKTGEFIRNLVTLESG------GSGGVVWRIRASNTKLVCAVGSRNGT  430 (445)
T ss_dssp             CSS-EEEEEETTSEEEEEETTTCCEEEEEEECTTG------GGTCEEEEEEECSSEEEEEEECSSSS
T ss_pred             CCC-EEEEEeCCCeEEEEECCCCceeeeeeccccC------CCCceEEEEEecCCEEEEEEcccCCC
Confidence            643 9999999999999999998887776321111      12477999999999999999999997

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=5.4e-39  Score=317.08  Aligned_cols=316  Identities=16%  Similarity=0.181  Sum_probs=254.4

Q ss_pred             eeeeeeeccCCceEEEEECCCCCeEEEeeCCceEEEEecCCceeEEEeeccCceEEEEeCCCCCCCCCCCCccccccccc
Q psy12697        131 ECLNTLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKGTGGIFEVCWNSRGTPPNPPESMEVDASIEI  210 (602)
Q Consensus       131 ~~~~~l~~h~~~V~~~~~s~d~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (602)
                      .....+.+|.+.|++++|+|  ++|++++.||.|++||+.+++...                                  
T Consensus         7 ~~~~~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~----------------------------------   50 (397)
T 1sq9_A            7 ATANAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNEN----------------------------------   50 (397)
T ss_dssp             EEEEESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCC----------------------------------
T ss_pred             hhhhhhhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCccccc----------------------------------
Confidence            34567889999999999999  899999999999999998876110                                  


Q ss_pred             cCCcceEeeCCCcceEEEEEcCC----C---CEEEEeeCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCC----
Q psy12697        211 PQSKATKLIGHESEVFICAWNPV----K---DFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPS----  279 (602)
Q Consensus       211 ~~~~~~~l~~h~~~v~~~~~~~~----~---~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----  279 (602)
                      +......+.+|...|.+++|+|+    +   ++|++++.|+.|++|++.++..........           ...+    
T Consensus        51 ~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~-----------~~~~~~~~  119 (397)
T 1sq9_A           51 PKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEK-----------LDLLDSDM  119 (397)
T ss_dssp             GGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEE-----------ECCSCTTG
T ss_pred             CCCcceEEecCCCcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCccccccccee-----------eccccccc
Confidence            00112456689999999999999    9   999999999999999998766421111111           1112    


Q ss_pred             -CCceeEEeeC----CCCCe-EEEEeCCCeEEEEcCCC-------ccee-----ec-------ccccCCeEEEEEccCCC
Q psy12697        280 -NKDVTSLDWN----NNGSF-LATGSYDGYARIWTSDG-------SLKS-----TL-------GQHKGPIFALKWNKRGN  334 (602)
Q Consensus       280 -~~~i~~~~~~----~~~~~-l~~~~~dg~i~i~~~~~-------~~~~-----~~-------~~~~~~i~~~~~~~~~~  334 (602)
                       ...|.+++|+    |++++ |++++.||.|++||+..       ....     .+       ..|...|.+++|+|++ 
T Consensus       120 ~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-  198 (397)
T 1sq9_A          120 KKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-  198 (397)
T ss_dssp             GGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-
T ss_pred             CCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-
Confidence             3789999999    99999 99999999999999765       3333     44       4588899999999999 


Q ss_pred             EEEEEecCCcEEEEeCCCCceeEEeee---c---cCCeeeeeccCCC-eEEEeeCC---CeEEEEEcCCCceeeEecc--
Q psy12697        335 YILSAGVDKTTIIWDAASGQCEQQFSF---H---SAPALDVDWQSNT-SFASCSTD---QHIHVCKLHSDKPVKSFEG--  402 (602)
Q Consensus       335 ~l~~~~~dg~i~~wd~~~~~~~~~~~~---~---~~~~~~~~~~~~~-~~~~~~~~---~~i~i~d~~~~~~~~~~~~--  402 (602)
                      ++++++.||.|++||+++++.+..+..   |   ...+.+++|+|++ .+++++.|   +.|++||+.+++.+..+.+  
T Consensus       199 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~  278 (397)
T 1sq9_A          199 LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPT  278 (397)
T ss_dssp             EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC-
T ss_pred             eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCc
Confidence            999999999999999999999999988   8   8999999999875 57888888   9999999999999999998  


Q ss_pred             -----------CCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeeeEeec------cccccEEEEEECCCCCCCCCCC
Q psy12697        403 -----------HTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHDLQ------AHNKEIYTIKWSPTGPETSNPN  465 (602)
Q Consensus       403 -----------~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~------~~~~~i~~~~~~~~~~~~~~~~  465 (602)
                                 |...|.+++|+|++++|++++.||.|++||+++++.+..+.      .|...      ...+       
T Consensus       279 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~------~~~g-------  345 (397)
T 1sq9_A          279 HSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEED------ILAV-------  345 (397)
T ss_dssp             -------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGG------CCCB-------
T ss_pred             ccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhh------hhcc-------
Confidence                       99999999999999999999999999999999998888876      33111      0000       


Q ss_pred             cceeeeeeeccCCccCCeEEEEEccCC----------CEEEEEeCCCeEEEEeCCCCc
Q psy12697        466 MSLIFILKSTLGQHKGPIFALKWNKRG----------NYILSAGVDKTTIIWDAASGQ  513 (602)
Q Consensus       466 ~~~~~~~~~~~~~~~~~v~~i~~s~~~----------~~l~s~~~dg~i~iwd~~~~~  513 (602)
                            .......|...|.+++|+|++          ++|++++.||.|++||+.+|+
T Consensus       346 ------~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g~  397 (397)
T 1sq9_A          346 ------DEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAGGK  397 (397)
T ss_dssp             ------CTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC--
T ss_pred             ------ccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEcCCCC
Confidence                  000122357889999999998          799999999999999998764

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=1.2e-38  Score=336.99  Aligned_cols=289  Identities=22%  Similarity=0.321  Sum_probs=243.1

Q ss_pred             eEeeCCCcceEEEEEcCCC-CEEEEeeCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEeeCCCCCe
Q psy12697        216 TKLIGHESEVFICAWNPVK-DFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSF  294 (602)
Q Consensus       216 ~~l~~h~~~v~~~~~~~~~-~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  294 (602)
                      ..+.+|...|++++|+|++ ++|++|+.|++|++|++............           ....|...|.+++|+|++++
T Consensus       376 ~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~-----------~~~~h~~~v~~v~~s~~g~~  444 (694)
T 3dm0_A          376 GTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQR-----------RLTGHSHFVEDVVLSSDGQF  444 (694)
T ss_dssp             EEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEE-----------EEECCSSCEEEEEECTTSSE
T ss_pred             hhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccc-----------eecCCCCcEEEEEECCCCCE
Confidence            4578999999999999875 79999999999999999865432211111           12346788999999999999


Q ss_pred             EEEEeCCCeEEEEcCC-CcceeecccccCCeEEEEEccCCCEEEEEecCCcEEEEeCCCCceeEEe---eeccCCeeeee
Q psy12697        295 LATGSYDGYARIWTSD-GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQF---SFHSAPALDVD  370 (602)
Q Consensus       295 l~~~~~dg~i~i~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~---~~~~~~~~~~~  370 (602)
                      |++|+.||.|++||+. +.....+.+|...|.+++|+|++++|++++.|++|++||..........   ..|...+.++.
T Consensus       445 l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~  524 (694)
T 3dm0_A          445 ALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVR  524 (694)
T ss_dssp             EEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEE
T ss_pred             EEEEeCCCcEEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEE
Confidence            9999999999999986 5667788899999999999999999999999999999998755433322   35777899999


Q ss_pred             ccCCC---eEEEeeCCCeEEEEEcCCCceeeEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeeeEeeccccc
Q psy12697        371 WQSNT---SFASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHDLQAHNK  447 (602)
Q Consensus       371 ~~~~~---~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~  447 (602)
                      |+|++   .+++++.|+.|++||+++.+....+.+|...|++++|+|++++|++|+.||.|++||+++++.+..+..   
T Consensus       525 ~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~~---  601 (694)
T 3dm0_A          525 FSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEA---  601 (694)
T ss_dssp             ECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCBC---
T ss_pred             EeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEecC---
Confidence            99974   599999999999999999999999999999999999999999999999999999999999887765532   


Q ss_pred             cEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeeecccC-----
Q psy12697        448 EIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHS-----  522 (602)
Q Consensus       448 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-----  522 (602)
                                                      ...|.+++|+|++.+|++++ ++.|++||+.+++.+..+..+.     
T Consensus       602 --------------------------------~~~v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~  648 (694)
T 3dm0_A          602 --------------------------------NSVIHALCFSPNRYWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEAE  648 (694)
T ss_dssp             --------------------------------SSCEEEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEECCCCC----
T ss_pred             --------------------------------CCcEEEEEEcCCCcEEEEEc-CCCEEEEECCCCCChhhhccccccccc
Confidence                                            34567777888888777765 5569999999998887665321     


Q ss_pred             --------------CCeeEeeecCCc-eEEEeeCCCcEEEeecC
Q psy12697        523 --------------APALDVDWQSNT-SFASCSTDQHIHVCKLH  551 (602)
Q Consensus       523 --------------~~v~~~~~s~~~-~l~~~~~d~~i~iw~~~  551 (602)
                                    ..+++++|+||| +|++|+.||.|++|++.
T Consensus       649 ~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~i~  692 (694)
T 3dm0_A          649 KADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGIG  692 (694)
T ss_dssp             ------------CCCCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred             cccccccccCCceeEEeeeEEEcCCCCEEEEEcCCCeEEEEecc
Confidence                          137889999999 99999999999999974

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=9.8e-39  Score=337.70  Aligned_cols=312  Identities=22%  Similarity=0.349  Sum_probs=250.3

Q ss_pred             eeeeeeeccCCceEEEEECCCC-CeEEEeeCCceEEEEecCCceeEEEeeccCceEEEEeCCCCCCCCCCCCcccccccc
Q psy12697        131 ECLNTLTRHTEPVYSVAFSPDG-KFLASGSFDKCVHIWSARTGQLVHSYKGTGGIFEVCWNSRGTPPNPPESMEVDASIE  209 (602)
Q Consensus       131 ~~~~~l~~h~~~V~~~~~s~d~-~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (602)
                      +....+++|++.|++++|+|++ ++|+||+.|++|+|||+.+.....                                 
T Consensus       373 ~~~~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~---------------------------------  419 (694)
T 3dm0_A          373 VLKGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAY---------------------------------  419 (694)
T ss_dssp             EEEEEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCS---------------------------------
T ss_pred             chhhhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCccc---------------------------------
Confidence            3445789999999999999865 799999999999999987643210                                 


Q ss_pred             ccCCcceEeeCCCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEeeC
Q psy12697        210 IPQSKATKLIGHESEVFICAWNPVKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWN  289 (602)
Q Consensus       210 ~~~~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  289 (602)
                        ......+.+|...|.+++|+|++++|++++.|++|++||+.++...     .           ....|...|.+++|+
T Consensus       420 --~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~~-----~-----------~~~~h~~~v~~~~~s  481 (694)
T 3dm0_A          420 --GVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVST-----R-----------RFVGHTKDVLSVAFS  481 (694)
T ss_dssp             --CEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEE-----E-----------EEECCSSCEEEEEEC
T ss_pred             --ccccceecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcce-----e-----------EEeCCCCCEEEEEEe
Confidence              0011467889999999999999999999999999999999876421     1           112467889999999


Q ss_pred             CCCCeEEEEeCCCeEEEEcCCCcceeec----ccccCCeEEEEEccCC--CEEEEEecCCcEEEEeCCCCceeEEeeecc
Q psy12697        290 NNGSFLATGSYDGYARIWTSDGSLKSTL----GQHKGPIFALKWNKRG--NYILSAGVDKTTIIWDAASGQCEQQFSFHS  363 (602)
Q Consensus       290 ~~~~~l~~~~~dg~i~i~~~~~~~~~~~----~~~~~~i~~~~~~~~~--~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~  363 (602)
                      |++++|++|+.|+.|++||..+.....+    ..|...|.+++|+|++  ..+++++.|++|++||++++++...+..|.
T Consensus       482 ~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~  561 (694)
T 3dm0_A          482 LDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHT  561 (694)
T ss_dssp             TTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCS
T ss_pred             CCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCC
Confidence            9999999999999999999876544433    4688899999999987  589999999999999999999999999999


Q ss_pred             CCeeeeeccCCC-eEEEeeCCCeEEEEEcCCCceeeEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeeeEee
Q psy12697        364 APALDVDWQSNT-SFASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHDL  442 (602)
Q Consensus       364 ~~~~~~~~~~~~-~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~  442 (602)
                      ..+.+++|+|++ .+++++.|+.|++||+.+++.+..+.. ...|.+++|+|++.+|++++. +.|++||+++++.+..+
T Consensus       562 ~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~~-~~~v~~~~~sp~~~~l~~~~~-~~i~iwd~~~~~~~~~~  639 (694)
T 3dm0_A          562 GYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEA-NSVIHALCFSPNRYWLCAATE-HGIKIWDLESKSIVEDL  639 (694)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCBC-SSCEEEEEECSSSSEEEEEET-TEEEEEETTTTEEEEEE
T ss_pred             CCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEecC-CCcEEEEEEcCCCcEEEEEcC-CCEEEEECCCCCChhhh
Confidence            999999999985 588999999999999999998887764 467999999999988887765 56999999999888877


Q ss_pred             ccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCCCeEEEEeCC
Q psy12697        443 QAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAA  510 (602)
Q Consensus       443 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~~  510 (602)
                      ..+........ ...+.              .....+...+++++|+|+|++|++|+.||.|++||+.
T Consensus       640 ~~~~~~~~~~~-~~~~~--------------~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~i~  692 (694)
T 3dm0_A          640 KVDLKAEAEKA-DNSGP--------------AATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGIG  692 (694)
T ss_dssp             CCCCC-------------------------------CCCCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred             ccccccccccc-ccccc--------------ccCCceeEEeeeEEEcCCCCEEEEEcCCCeEEEEecc
Confidence            65432111000 00000              0011233457899999999999999999999999985

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=8.3e-39  Score=315.76  Aligned_cols=305  Identities=20%  Similarity=0.302  Sum_probs=253.7

Q ss_pred             eEeeCCCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEeeCCC----
Q psy12697        216 TKLIGHESEVFICAWNPVKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNN----  291 (602)
Q Consensus       216 ~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~----  291 (602)
                      ..+.+|...|++++|+|  ++|++++.||.|++|++.+............          ...|...|.+++|+|+    
T Consensus        10 ~~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~----------~~~h~~~v~~~~~~~~~~~~   77 (397)
T 1sq9_A           10 NAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYS----------HFVHKSGLHHVDVLQAIERD   77 (397)
T ss_dssp             EESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEE----------EECCTTCEEEEEEEEEEETT
T ss_pred             hhhhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceE----------EecCCCcEEEEEEecccccC
Confidence            55678999999999998  8999999999999999988764332222211          1235788999999999    


Q ss_pred             C---CeEEEEeCCCeEEEEcCCCcc------eeecccc-----cCCeEEEEEc----cCCCE-EEEEecCCcEEEEeCCC
Q psy12697        292 G---SFLATGSYDGYARIWTSDGSL------KSTLGQH-----KGPIFALKWN----KRGNY-ILSAGVDKTTIIWDAAS  352 (602)
Q Consensus       292 ~---~~l~~~~~dg~i~i~~~~~~~------~~~~~~~-----~~~i~~~~~~----~~~~~-l~~~~~dg~i~~wd~~~  352 (602)
                      +   ++|++++.||.|++|++....      ...+..|     ...|.+++|+    |++++ |++++.||.|++||+.+
T Consensus        78 g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~  157 (397)
T 1sq9_A           78 AFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHP  157 (397)
T ss_dssp             TEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEES
T ss_pred             CccccEEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCc
Confidence            9   999999999999999987433      6777788     5999999999    99999 99999999999999998


Q ss_pred             ------CceeE-----Eee-------eccCCeeeeeccCCCeEEEeeCCCeEEEEEcCCCceeeEecc---C---CCCeE
Q psy12697        353 ------GQCEQ-----QFS-------FHSAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEG---H---TNEVN  408 (602)
Q Consensus       353 ------~~~~~-----~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~---~---~~~i~  408 (602)
                            ++.+.     .+.       .+...+.++.|++++.+++++.++.|++||+++++++..+..   |   ...|.
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~  237 (397)
T 1sq9_A          158 FADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIR  237 (397)
T ss_dssp             SSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTSEEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEE
T ss_pred             cccccccceeeccCcceeeeeeccccCCCCCceEEEECCCceEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccc
Confidence                  66665     663       378889999999988888889999999999999999999998   9   99999


Q ss_pred             EEEECCCCCEEEEEECC---CeEEEEeCCCCeeeEeeccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEE
Q psy12697        409 AIKWDPQGLLLASCSDD---MTLKIWSLDKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFA  485 (602)
Q Consensus       409 ~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  485 (602)
                      +++|+|++++|++++.|   |.|++||+++++.+..+......-..                     ......|...|.+
T Consensus       238 ~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~v~~  296 (397)
T 1sq9_A          238 SVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQA---------------------SLGEFAHSSWVMS  296 (397)
T ss_dssp             EEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC-----------------------------CCBSBSSCEEE
T ss_pred             eEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccc---------------------cccccccCCcEEE
Confidence            99999999999999999   99999999998887776542110000                     0001126778888


Q ss_pred             EEEccCCCEEEEEeCCCeEEEEeCCCCceeeeec------cc---------------CCCeeEeeecCCc----------
Q psy12697        486 LKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFS------FH---------------SAPALDVDWQSNT----------  534 (602)
Q Consensus       486 i~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~------~~---------------~~~v~~~~~s~~~----------  534 (602)
                      ++|+|++++|++++.||.|++||+.+++++..+.      .|               ..+|.+++|+|++          
T Consensus       297 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~  376 (397)
T 1sq9_A          297 LSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLN  376 (397)
T ss_dssp             EEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTS
T ss_pred             EEECCCCCEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEecccccccccccccc
Confidence            9999999999999999999999999999999998      78               9999999999995          


Q ss_pred             -eEEEeeCCCcEEEeecCCC
Q psy12697        535 -SFASCSTDQHIHVCKLHSD  553 (602)
Q Consensus       535 -~l~~~~~d~~i~iw~~~~~  553 (602)
                       .|++++.||.|++|++.++
T Consensus       377 ~~l~s~~~dg~i~iw~~~~g  396 (397)
T 1sq9_A          377 ESLCCVCLDRSIRWFREAGG  396 (397)
T ss_dssp             CEEEEEETTTEEEEEEEEC-
T ss_pred             ceEEEecCCCcEEEEEcCCC
Confidence             8999999999999998765

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=3.2e-38  Score=318.20  Aligned_cols=317  Identities=22%  Similarity=0.330  Sum_probs=261.9

Q ss_pred             eEeeCCCcce-EEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEeeCCCCCe
Q psy12697        216 TKLIGHESEV-FICAWNPVKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSF  294 (602)
Q Consensus       216 ~~l~~h~~~v-~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  294 (602)
                      ..+.+|...+ .++.+  ++++|++|+.||+|++||+.+++...                ....|...|.+++|+|++ .
T Consensus       115 ~~l~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~~~~----------------~~~~h~~~V~~l~~~~~~-~  175 (464)
T 3v7d_B          115 TTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLL----------------QLSGHDGGVWALKYAHGG-I  175 (464)
T ss_dssp             EEEECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTTTEEEE----------------EECCCSSCEEEEEECSTT-E
T ss_pred             EEEcCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCCcEEE----------------EEeCCCcCEEEEEEcCCC-E
Confidence            5678898885 55555  57899999999999999998764211                112467899999999988 9


Q ss_pred             EEEEeCCCeEEEEcCC-CcceeecccccCCeEEEEEc--cCCCEEEEEecCCcEEEEeCCCCce----------------
Q psy12697        295 LATGSYDGYARIWTSD-GSLKSTLGQHKGPIFALKWN--KRGNYILSAGVDKTTIIWDAASGQC----------------  355 (602)
Q Consensus       295 l~~~~~dg~i~i~~~~-~~~~~~~~~~~~~i~~~~~~--~~~~~l~~~~~dg~i~~wd~~~~~~----------------  355 (602)
                      +++|+.||.|++||++ +.....+..|...|.+++|+  ++++++++++.||.|++||+.++..                
T Consensus       176 l~s~s~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~  255 (464)
T 3v7d_B          176 LVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHT  255 (464)
T ss_dssp             EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESC
T ss_pred             EEEEeCCCCEEEEECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeec
Confidence            9999999999999987 66777888999999999998  5778999999999999999988753                


Q ss_pred             -------eEEeeeccCCeeeeeccCCCeEEEeeCCCeEEEEEcCCCceeeEeccCCCCeEEEEECCCCCEEEEEECCCeE
Q psy12697        356 -------EQQFSFHSAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTL  428 (602)
Q Consensus       356 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i  428 (602)
                             ...+..|...+.++.. .+..+++++.|+.|++||+.+++.+..+.+|...|.+++|+|++++|++|+.||.|
T Consensus       256 ~~~~~~~~~~~~~~~~~v~~~~~-~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i  334 (464)
T 3v7d_B          256 PEENPYFVGVLRGHMASVRTVSG-HGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTI  334 (464)
T ss_dssp             GGGCTTEEEEECCCSSCEEEEEE-ETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCE
T ss_pred             cCCCeEEEEEccCccceEEEEcC-CCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcE
Confidence                   3345556666776642 35679999999999999999999999999999999999999999999999999999


Q ss_pred             EEEeCCCCeeeEeeccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCCCeEEEEe
Q psy12697        429 KIWSLDKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWD  508 (602)
Q Consensus       429 ~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd  508 (602)
                      ++||+++++++..+..|...+.++.|                                  +  +++|++++.||.|++||
T Consensus       335 ~vwd~~~~~~~~~~~~h~~~v~~~~~----------------------------------~--~~~l~s~s~dg~v~vwd  378 (464)
T 3v7d_B          335 RIWDLENGELMYTLQGHTALVGLLRL----------------------------------S--DKFLVSAAADGSIRGWD  378 (464)
T ss_dssp             EEEETTTTEEEEEECCCSSCEEEEEE----------------------------------C--SSEEEEEETTSEEEEEE
T ss_pred             EEEECCCCcEEEEEeCCCCcEEEEEE----------------------------------c--CCEEEEEeCCCcEEEEE
Confidence            99999999988888776665555554                                  3  36899999999999999


Q ss_pred             CCCCceeeeecccCCCeeEeeecCCc-eEEEeeCCCcEEEeecCCCCceee-eecccccceEEEEecCCcEEEEEECCCC
Q psy12697        509 AASGQCEQQFSFHSAPALDVDWQSNT-SFASCSTDQHIHVCKLHSDKPVKS-FEGHTTGQLVHSYKGTGGIFEVCWNSRG  586 (602)
Q Consensus       509 ~~~~~~~~~~~~~~~~v~~~~~s~~~-~l~~~~~d~~i~iw~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~l~~spdg  586 (602)
                      +.++....... +...+..++|+|++ .+++++ ||.|++||+.+++.+.. +..+           .+.|.+++|+ ++
T Consensus       379 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g~~~~~~~~~~-----------~~~v~~v~~~-~~  444 (464)
T 3v7d_B          379 ANDYSRKFSYH-HTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLVHANILKD-----------ADQIWSVNFK-GK  444 (464)
T ss_dssp             TTTCCEEEEEE-CTTCCCEEEEEECSSEEEEEE-TTEEEEEETTTCCEEESCTTTT-----------CSEEEEEEEE-TT
T ss_pred             CCCCceeeeec-CCCCccEEEEEeCCCEEEEec-CCeEEEEECCCCcEEehhhccC-----------CCcEEEEEec-CC
Confidence            99988766654 67778889999999 777777 99999999999988765 3333           3679999997 45


Q ss_pred             CeEEEeccCCeEEeeC
Q psy12697        587 DKVGASASDGSVFKNV  602 (602)
Q Consensus       587 ~~l~~~~~dg~v~i~v  602 (602)
                      .++++++.||.+.+++
T Consensus       445 ~l~~~~~~~g~~~i~~  460 (464)
T 3v7d_B          445 TLVAAVEKDGQSFLEI  460 (464)
T ss_dssp             EEEEEEEETTEEEEEE
T ss_pred             EEEEEEEeCCeEEEEE
Confidence            5666667788877653

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=1.3e-38  Score=316.86  Aligned_cols=323  Identities=14%  Similarity=0.173  Sum_probs=263.0

Q ss_pred             eccceeeeecccceeeeeeeccCCceEEEEECCCCCeEEEeeCCceEEEEecCCceeEEEeeccCceEEEEeCCCCCCCC
Q psy12697        118 HRLTLPLWDVERGECLNTLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKGTGGIFEVCWNSRGTPPN  197 (602)
Q Consensus       118 ~~~~i~vwd~~~~~~~~~l~~h~~~V~~~~~s~d~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  197 (602)
                      .++.|++||+.+++....+..| ..+....|+|++++|++++.|+.|++||+.+++...                     
T Consensus        76 ~d~~v~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~---------------------  133 (420)
T 3vl1_A           76 LDGHDFLFNTIIRDGSKMLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQRE---------------------  133 (420)
T ss_dssp             ETTEEEEEECCSEETTTTSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEE---------------------
T ss_pred             cCCcEEEEEecccceeeEEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCcceee---------------------
Confidence            3679999999999998888887 555666889999999999999999999999887653                     


Q ss_pred             CCCCccccccccccCCcceEeeCCCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCccc
Q psy12697        198 PPESMEVDASIEIPQSKATKLIGHESEVFICAWNPVKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEV  277 (602)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (602)
                                         .+.+|...|.+++|+|++++|++++.|+.|++||+.+++....                ..
T Consensus       134 -------------------~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~----------------~~  178 (420)
T 3vl1_A          134 -------------------IDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRT----------------LI  178 (420)
T ss_dssp             -------------------ETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEE----------------EE
T ss_pred             -------------------ecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceE----------------Ec
Confidence                               3357999999999999999999999999999999987764311                12


Q ss_pred             CCCCceeEEeeCCCCCeEEEEeCCCeEEEEcCC-Ccceeecc---cccCCeEEEEEccCCCEEEEEecCCcEEEEeCCCC
Q psy12697        278 PSNKDVTSLDWNNNGSFLATGSYDGYARIWTSD-GSLKSTLG---QHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASG  353 (602)
Q Consensus       278 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~-~~~~~~~~---~~~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~~  353 (602)
                      .|...|.+++|+|++++|++++.||.|++||+. ++....+.   .+...+.+++|.+.+...                 
T Consensus       179 ~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-----------------  241 (420)
T 3vl1_A          179 GHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQ-----------------  241 (420)
T ss_dssp             CCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSS-----------------
T ss_pred             CCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcce-----------------
Confidence            357889999999999999999999999999987 45555554   466788888887764322                 


Q ss_pred             ceeEEeeeccCCeeeeeccCCC-eEEEeeCCCeEEEEEcCCCceeeEec-cCCCCeEEEEECCCCC-EEEEEECCCeEEE
Q psy12697        354 QCEQQFSFHSAPALDVDWQSNT-SFASCSTDQHIHVCKLHSDKPVKSFE-GHTNEVNAIKWDPQGL-LLASCSDDMTLKI  430 (602)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~i~d~~~~~~~~~~~-~~~~~i~~~~~~~~~~-~l~~~~~dg~i~i  430 (602)
                          ....+...+.+++|+|++ .+++++.||.|++||+++++.+..+. .|...|.+++|+|+++ +|++|+.||.|++
T Consensus       242 ----~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~v  317 (420)
T 3vl1_A          242 ----LHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQ  317 (420)
T ss_dssp             ----CGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEE
T ss_pred             ----eeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEE
Confidence                122345678889999986 57888999999999999988776664 4788999999999999 9999999999999


Q ss_pred             EeCCCCee-eEeeccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCCCeEEEEeC
Q psy12697        431 WSLDKDNC-VHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDA  509 (602)
Q Consensus       431 wd~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~  509 (602)
                      ||+++++. +..+..+                                 |...|.++.+ +++++|++++.||.|++||+
T Consensus       318 wd~~~~~~~~~~~~~~---------------------------------~~~~v~~~~~-~~~~~l~s~~~d~~v~iw~~  363 (420)
T 3vl1_A          318 WDLRSPECPVGEFLIN---------------------------------EGTPINNVYF-AAGALFVSSGFDTSIKLDII  363 (420)
T ss_dssp             EETTCTTSCSEEEEES---------------------------------TTSCEEEEEE-ETTEEEEEETTTEEEEEEEE
T ss_pred             EEcCCCcCchhhhhcc---------------------------------CCCCceEEEe-CCCCEEEEecCCccEEEEec
Confidence            99998643 4444432                                 3445666644 47789999999999999998


Q ss_pred             CCC---------ceeeeecccCCCeeEeeecCCce----EEEeeCCCcEEEeecCC
Q psy12697        510 ASG---------QCEQQFSFHSAPALDVDWQSNTS----FASCSTDQHIHVCKLHS  552 (602)
Q Consensus       510 ~~~---------~~~~~~~~~~~~v~~~~~s~~~~----l~~~~~d~~i~iw~~~~  552 (602)
                      ...         .....+..|...|.+++|+|++.    +++++.+|.+.+|++++
T Consensus       364 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~g~~~~~~~~~  419 (420)
T 3vl1_A          364 SDPESERPAIEFETPTFLVSNDDAVSQFCYVSDDESNGEVLEVGKNNFCALYNLSN  419 (420)
T ss_dssp             CCTTCCSCEECTTSCEEECCSSCCCCEEEEECCSSSSCEEEEEETTTEEEEEESCC
T ss_pred             cCCCCCccceeccCccEEccCCcceEEEEEccCCCCcceEEEEcCCceEEEEeccC
Confidence            873         22234556888999999999985    99999999999999754

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=1.7e-38  Score=308.67  Aligned_cols=296  Identities=14%  Similarity=0.278  Sum_probs=234.9

Q ss_pred             eeeeccCCceEEEEECCCCC-eEEEeeC---CceEEEEecCCceeEEEeeccCceEEEEeCCCCCCCCCCCCcccccccc
Q psy12697        134 NTLTRHTEPVYSVAFSPDGK-FLASGSF---DKCVHIWSARTGQLVHSYKGTGGIFEVCWNSRGTPPNPPESMEVDASIE  209 (602)
Q Consensus       134 ~~l~~h~~~V~~~~~s~d~~-~l~s~~~---d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (602)
                      +.+++|...|.+++|+|++. ++++++.   |+.|+|||+.+++....                                
T Consensus        12 ~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~--------------------------------   59 (357)
T 3i2n_A           12 HIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLL--------------------------------   59 (357)
T ss_dssp             EEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEE--------------------------------
T ss_pred             hhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccce--------------------------------
Confidence            45578999999999999996 4556665   99999999998876532                                


Q ss_pred             ccCCcceEeeCCCcceEEEEEcCC---CCEEEEeeCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEE
Q psy12697        210 IPQSKATKLIGHESEVFICAWNPV---KDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSL  286 (602)
Q Consensus       210 ~~~~~~~~l~~h~~~v~~~~~~~~---~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  286 (602)
                             ...+|...|.+++|+|+   +++|++++.||.|++||+.++...    ..           ....|...|.++
T Consensus        60 -------~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~----~~-----------~~~~~~~~v~~~  117 (357)
T 3i2n_A           60 -------REIEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMP----VY-----------SVKGHKEIINAI  117 (357)
T ss_dssp             -------EEEEESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSC----SE-----------EECCCSSCEEEE
T ss_pred             -------eeecccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCcc----EE-----------EEEecccceEEE
Confidence                   22368999999999998   699999999999999999877511    11           112356889999


Q ss_pred             ------eeCCCCCeEEEEeCCCeEEEEcCCCc--ceeecccccC----CeEEEE----EccCCCEEEEEecCCcEEEEeC
Q psy12697        287 ------DWNNNGSFLATGSYDGYARIWTSDGS--LKSTLGQHKG----PIFALK----WNKRGNYILSAGVDKTTIIWDA  350 (602)
Q Consensus       287 ------~~~~~~~~l~~~~~dg~i~i~~~~~~--~~~~~~~~~~----~i~~~~----~~~~~~~l~~~~~dg~i~~wd~  350 (602)
                            +|+|++++|++++.||.|++||+...  ....+..|.+    .+.+++    |+|+++++++++.||.|++||+
T Consensus       118 ~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~  197 (357)
T 3i2n_A          118 DGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDL  197 (357)
T ss_dssp             EEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEET
T ss_pred             eeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEEC
Confidence                  56789999999999999999998743  4556655544    788888    7889999999999999999998


Q ss_pred             CCCceeEEeeeccCCeeeeeccCCCeEEEeeCCCeEEEEEcCCCceeeEeccCCCCeEEEEECC---CCCEEEEEECCCe
Q psy12697        351 ASGQCEQQFSFHSAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDP---QGLLLASCSDDMT  427 (602)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~---~~~~l~~~~~dg~  427 (602)
                      ++++..                                          ....|...|.+++|+|   ++.+|++++.||.
T Consensus       198 ~~~~~~------------------------------------------~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~  235 (357)
T 3i2n_A          198 RNMALR------------------------------------------WETNIKNGVCSLEFDRKDISMNKLVATSLEGK  235 (357)
T ss_dssp             TTTEEE------------------------------------------EEEECSSCEEEEEESCSSSSCCEEEEEESTTE
T ss_pred             ccCcee------------------------------------------eecCCCCceEEEEcCCCCCCCCEEEEECCCCe
Confidence            875432                                          1233667899999999   9999999999999


Q ss_pred             EEEEeCCCCeeeEeeccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCC-EEEEEeCCCeEEE
Q psy12697        428 LKIWSLDKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGN-YILSAGVDKTTII  506 (602)
Q Consensus       428 i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~-~l~s~~~dg~i~i  506 (602)
                      |++||+++++....+..                             ....+|...|.+++|+|+++ +|++++.||.|++
T Consensus       236 i~i~d~~~~~~~~~~~~-----------------------------~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i  286 (357)
T 3i2n_A          236 FHVFDMRTQHPTKGFAS-----------------------------VSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHL  286 (357)
T ss_dssp             EEEEEEEEEETTTEEEE-----------------------------EEEECCSSCEEEEEEETTEEEEEEEEETTSEEEE
T ss_pred             EEEEeCcCCCcccceee-----------------------------eccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEE
Confidence            99999987654433321                             01234778888899999988 8999999999999


Q ss_pred             EeCCCC-------------------ceeeeecccCCCeeEeeecCCc-eEE-EeeCCCcEEEeecCCCC
Q psy12697        507 WDAASG-------------------QCEQQFSFHSAPALDVDWQSNT-SFA-SCSTDQHIHVCKLHSDK  554 (602)
Q Consensus       507 wd~~~~-------------------~~~~~~~~~~~~v~~~~~s~~~-~l~-~~~~d~~i~iw~~~~~~  554 (602)
                      ||+.++                   +++..+..|..+|.+++|+|++ .|+ +++.|+.|++||+.+.+
T Consensus       287 wd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~~  355 (357)
T 3i2n_A          287 WKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKLN  355 (357)
T ss_dssp             EEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECC--
T ss_pred             eecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEcCCCCeEEEEecCCCcEEEEECCCcc
Confidence            999754                   3567788899999999999999 777 89999999999987654

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.7e-38  Score=308.76  Aligned_cols=293  Identities=18%  Similarity=0.235  Sum_probs=252.5

Q ss_pred             ceEeeCCCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEeeCCCCCe
Q psy12697        215 ATKLIGHESEVFICAWNPVKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSF  294 (602)
Q Consensus       215 ~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  294 (602)
                      ...+.+|...|.+++|+|++++|++++.||.|++||+.+++...                ....|...|.+++|+|++++
T Consensus        25 ~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~----------------~~~~h~~~v~~~~~~~~~~~   88 (369)
T 3zwl_B           25 AIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLG----------------TLDGHTGTIWSIDVDCFTKY   88 (369)
T ss_dssp             EEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEE----------------EECCCSSCEEEEEECTTSSE
T ss_pred             cEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhh----------------hhhhcCCcEEEEEEcCCCCE
Confidence            36688999999999999999999999999999999998764321                11235788999999999999


Q ss_pred             EEEEeCCCeEEEEcCCC-cceeecccccCCeEEEEEccCCCEEEEEecC-----CcEEEEeCCCCce-----------eE
Q psy12697        295 LATGSYDGYARIWTSDG-SLKSTLGQHKGPIFALKWNKRGNYILSAGVD-----KTTIIWDAASGQC-----------EQ  357 (602)
Q Consensus       295 l~~~~~dg~i~i~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----g~i~~wd~~~~~~-----------~~  357 (602)
                      |++++.||.|++||+.. .....+. +...+.+++|+|+++++++++.+     +.|.+||+.....           ..
T Consensus        89 l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~  167 (369)
T 3zwl_B           89 CVTGSADYSIKLWDVSNGQCVATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIH  167 (369)
T ss_dssp             EEEEETTTEEEEEETTTCCEEEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSE
T ss_pred             EEEEeCCCeEEEEECCCCcEEEEee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceee
Confidence            99999999999999874 4444444 88999999999999999999998     9999999887643           23


Q ss_pred             EeeeccC--CeeeeeccCCC-eEEEeeCCCeEEEEEcCC-CceeeEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEeC
Q psy12697        358 QFSFHSA--PALDVDWQSNT-SFASCSTDQHIHVCKLHS-DKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSL  433 (602)
Q Consensus       358 ~~~~~~~--~~~~~~~~~~~-~~~~~~~~~~i~i~d~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~  433 (602)
                      .+..+..  .+.+++|++++ .+++++.+|.|++||+.+ .+.+..+..|...|.+++|+|++++|++++.||.|++||+
T Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~  247 (369)
T 3zwl_B          168 KIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDV  247 (369)
T ss_dssp             EEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred             eccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEEC
Confidence            3344444  88999999875 688899999999999998 7888999999999999999999999999999999999999


Q ss_pred             CCCeeeEeeccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCCC-----------
Q psy12697        434 DKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDK-----------  502 (602)
Q Consensus       434 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg-----------  502 (602)
                      ++++.+..+.                                   +...+..++|+|+++++++++.++           
T Consensus       248 ~~~~~~~~~~-----------------------------------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  292 (369)
T 3zwl_B          248 STLQVLKKYE-----------------------------------TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANE  292 (369)
T ss_dssp             TTCCEEEEEE-----------------------------------CSSCEEEEEECSSSSEEEEEECCC-----------
T ss_pred             CCCceeeeec-----------------------------------CCCCceeEEecCCCceEEEeecCCCceEEEEecCC
Confidence            9887776654                                   345567777888899999999888           


Q ss_pred             ---eEEEEeCCCCceeeeecccCCCeeEeeecCCc-eEEEeeCCCcEEEeecCCCCceeee
Q psy12697        503 ---TTIIWDAASGQCEQQFSFHSAPALDVDWQSNT-SFASCSTDQHIHVCKLHSDKPVKSF  559 (602)
Q Consensus       503 ---~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~-~l~~~~~d~~i~iw~~~~~~~~~~~  559 (602)
                         .+++||..+++.+..+.+|...|.+++|+|++ +|++++.||.|++|+++.+.....+
T Consensus       293 ~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~  353 (369)
T 3zwl_B          293 GKFEARFYHKIFEEEIGRVQGHFGPLNTVAISPQGTSYASGGEDGFIRLHHFEKSYFDFKY  353 (369)
T ss_dssp             --CEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEEECHHHHTCCC
T ss_pred             CcceeEEEecCCCcchhheecccCcEEEEEECCCCCEEEEEcCCCeEEEEECccccchhHH
Confidence               89999999999999999999999999999999 9999999999999999876544433

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=8.2e-39  Score=312.85  Aligned_cols=323  Identities=17%  Similarity=0.196  Sum_probs=251.6

Q ss_pred             eeccCCceEEEEECCCCCeEEEeeCCceEEEEecCCce--eEEEeeccCceEEEEeCCCCCCCCCCCCccccccccccCC
Q psy12697        136 LTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQ--LVHSYKGTGGIFEVCWNSRGTPPNPPESMEVDASIEIPQS  213 (602)
Q Consensus       136 l~~h~~~V~~~~~s~d~~~l~s~~~d~~v~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  213 (602)
                      +..|.++|++++|+|++++|++++.|+.|++||+.+++  .+                                      
T Consensus         4 ~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~--------------------------------------   45 (372)
T 1k8k_C            4 HSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQV--------------------------------------   45 (372)
T ss_dssp             EESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEE--------------------------------------
T ss_pred             ecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEee--------------------------------------
Confidence            45699999999999999999999999999999998886  44                                      


Q ss_pred             cceEeeCCCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEeeCCCCC
Q psy12697        214 KATKLIGHESEVFICAWNPVKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGS  293 (602)
Q Consensus       214 ~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  293 (602)
                        ..+.+|...|.+++|+|++++|++++.||.|++||+.+++...      .  .      ....+...|.+++|+|+++
T Consensus        46 --~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~------~--~------~~~~~~~~v~~~~~~~~~~  109 (372)
T 1k8k_C           46 --HELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKP------T--L------VILRINRAARCVRWAPNEK  109 (372)
T ss_dssp             --EEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEE------E--E------ECCCCSSCEEEEEECTTSS
T ss_pred             --eeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCeeee------e--E------EeecCCCceeEEEECCCCC
Confidence              4456799999999999999999999999999999997653210      0  0      1123567899999999999


Q ss_pred             eEEEEeCCCeEEEEcCCCcc-----eeecccccCCeEEEEEccCCCEEEEEecCCcEEEEeC------------------
Q psy12697        294 FLATGSYDGYARIWTSDGSL-----KSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDA------------------  350 (602)
Q Consensus       294 ~l~~~~~dg~i~i~~~~~~~-----~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~------------------  350 (602)
                      +|++++.||.|++|+++...     ......|...|.+++|+|++++|++++.||.|++||+                  
T Consensus       110 ~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~  189 (372)
T 1k8k_C          110 KFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKM  189 (372)
T ss_dssp             EEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCC
T ss_pred             EEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEccccccccccccccccccc
Confidence            99999999999999987432     3334678999999999999999999999999999995                  


Q ss_pred             CCCceeEEeeeccCCeeeeeccCCC-eEEEeeCCCeEEEEEcCCCceeeEeccCCCCeEEEEECCCCCEEEEEECCCeEE
Q psy12697        351 ASGQCEQQFSFHSAPALDVDWQSNT-SFASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLK  429 (602)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~  429 (602)
                      ..++.+..+..+...+.++.|+|++ .+++++.|+.|++||+++++++..+..|...|.+++|+|++++|+++ .|+.|+
T Consensus       190 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~  268 (372)
T 1k8k_C          190 PFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAG-HDCFPV  268 (372)
T ss_dssp             CTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEEE-TTSSCE
T ss_pred             chhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEEccCCCCeEEEEEecCCCEEEEE-eCCeEE
Confidence            4678888888899999999999885 68899999999999999999999999999999999999999988887 899999


Q ss_pred             EEeCCC--Ce--eeEeeccccccEEEEEECCCCCC-CCCCCccee--eee-eeccCCccCCeEEEEEc-cCC---CEEEE
Q psy12697        430 IWSLDK--DN--CVHDLQAHNKEIYTIKWSPTGPE-TSNPNMSLI--FIL-KSTLGQHKGPIFALKWN-KRG---NYILS  497 (602)
Q Consensus       430 iwd~~~--~~--~~~~~~~~~~~i~~~~~~~~~~~-~~~~~~~~~--~~~-~~~~~~~~~~v~~i~~s-~~~---~~l~s  497 (602)
                      +|++.+  +.  .+..+..+....... ....... .........  ... .....+|..+|++++|. ++|   ++|++
T Consensus       269 i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s  347 (372)
T 1k8k_C          269 LFTYDSAAGKLSFGGRLDVPKQSSQRG-LTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCT  347 (372)
T ss_dssp             EEEEETTTTEEEECCCCCCC---------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEE
T ss_pred             EEEccCcCceEEEeeccCccccchhhh-cchhhhhhhcccccccccCccccccccccccCCcceeEEecCCCcceeeEEE
Confidence            999987  53  222222211110000 0000000 000000000  000 11224899999999966 677   99999


Q ss_pred             EeCCCeEEEEeCCCCce
Q psy12697        498 AGVDKTTIIWDAASGQC  514 (602)
Q Consensus       498 ~~~dg~i~iwd~~~~~~  514 (602)
                      ++.||.|++||+.+++.
T Consensus       348 ~~~Dg~i~~W~~~~~~~  364 (372)
T 1k8k_C          348 TGMDGGMSIWDVRSLES  364 (372)
T ss_dssp             EETTSEEEEEEHHHHHH
T ss_pred             ecCCCceEEEEecChhH
Confidence            99999999999987653

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.3e-39  Score=327.24  Aligned_cols=309  Identities=16%  Similarity=0.116  Sum_probs=223.5

Q ss_pred             CCCCEEEEeeCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEeeCCC------CCeEEEEeCCCeEE
Q psy12697        232 PVKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNN------GSFLATGSYDGYAR  305 (602)
Q Consensus       232 ~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~------~~~l~~~~~dg~i~  305 (602)
                      |+++.+++++.|++|+||++.+++....  .....          ..+...|.+++|+|+      +.+||+++.||.|+
T Consensus       171 ~~~~~laS~s~D~tI~iWd~~~~~~~~~--~~~~l----------~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~Dgtvr  238 (524)
T 2j04_B          171 EHLEMFDKEKHSSCIQIFKMNTSTLHCV--KVQTI----------VHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTIN  238 (524)
T ss_dssp             -----------CEEEEEEEEETTTCCEE--EEEEE----------EECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEE
T ss_pred             hhhhhhccCCCCceEEEEEccCCCCCce--EEEEE----------EecCCcEEEEEECCCCCCCCCCceEEEEecCCeEE
Confidence            3334455567889999999977653210  00001          123577999999996      57999999999999


Q ss_pred             EEcCCCcc------------eeecccccCCeEEEEEccCCCEEEEEecCCcEEEEeCCCCc-eeEEeeeccCCeeee--e
Q psy12697        306 IWTSDGSL------------KSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQ-CEQQFSFHSAPALDV--D  370 (602)
Q Consensus       306 i~~~~~~~------------~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~-~~~~~~~~~~~~~~~--~  370 (602)
                      +||+....            ...+..|...|.+++|+++ ..|++|+.||+|++||++++. ....+..|...|.++  .
T Consensus       239 lWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~-~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~  317 (524)
T 2j04_B          239 FLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSP-TTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTA  317 (524)
T ss_dssp             EEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSS-SEEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEE
T ss_pred             EEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCC-CeEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEE
Confidence            99986431            2356789999999999986 489999999999999999774 445678899999999  5


Q ss_pred             ccCCC--eEEEeeCCCeEEEEEcCCCceeeEeccCCC--CeEEEEECCCCCEEEEEECCCeEEEEeCCCCeeeEeecccc
Q psy12697        371 WQSNT--SFASCSTDQHIHVCKLHSDKPVKSFEGHTN--EVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHDLQAHN  446 (602)
Q Consensus       371 ~~~~~--~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~--~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~  446 (602)
                      |++++  .+++++.|++|++||+++++....+.+|..  .|.+++|+|+++.|++++.|++|++||++++.++..+.+  
T Consensus       318 ~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~g--  395 (524)
T 2j04_B          318 YSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVS--  395 (524)
T ss_dssp             CCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEE--
T ss_pred             cCCCCCeEEEEeccCCeEEEEECCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeec--
Confidence            77764  689999999999999999888777777764  588999999999999999999999999998776665544  


Q ss_pred             ccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeeecc-----c
Q psy12697        447 KEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSF-----H  521 (602)
Q Consensus       447 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-----~  521 (602)
                                                      |.+.|++++|||+|++|++|+.||+|++||+..+ .+..+..     +
T Consensus       396 --------------------------------H~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~-~~~~~~~~~~~~~  442 (524)
T 2j04_B          396 --------------------------------RETTITAIGVSRLHPMVLAGSADGSLIITNAARR-LLHGIKNSSATQK  442 (524)
T ss_dssp             --------------------------------CSSCEEEEECCSSCCBCEEEETTTEEECCBSCSS-TTTCC------CC
T ss_pred             --------------------------------CCCceEEEEeCCCCCeEEEEECCCEEEEEechHh-hccccccCcccee
Confidence                                            5566777777778899999999999999998754 3332221     1


Q ss_pred             CCCeeEeeecCCceEEEeeCCCcEEEeecC-CCCceeeeecccccceEEEEecCCcEEEEEECCCCC---eEEEeccCCe
Q psy12697        522 SAPALDVDWQSNTSFASCSTDQHIHVCKLH-SDKPVKSFEGHTTGQLVHSYKGTGGIFEVCWNSRGD---KVGASASDGS  597 (602)
Q Consensus       522 ~~~v~~~~~s~~~~l~~~~~d~~i~iw~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~---~l~~~~~dg~  597 (602)
                      ...+.+++|+|++.++....  .+.+|+.. ++..+..+.+|.           +.|.+|+|+|++.   +||+|+.||.
T Consensus       443 ~~~v~~v~~sp~g~~~~~~~--~~~~~~~~~~g~~~~~l~gh~-----------~~V~~Vafsp~~~~~~~lAsg~~~g~  509 (524)
T 2j04_B          443 SLRLWKWDYSIKDDKYRIDS--SYEVYPLTVNDVSKAKIDAHG-----------INITCTKWNETSAGGKCYAFSNSAGL  509 (524)
T ss_dssp             CCEEEECBCCSSSCEEEECC--CCCCCC-------------CC-----------CSCCCEEECCSTTTTTEEEEECTTSE
T ss_pred             eeEEEEeccCCCCCeEEccC--CceecccccCCcceeeecCCC-----------ceEEEEECCCCCCccHHHHhhccCce
Confidence            12477999999994333222  34444432 344455555554           7899999999965   9999999999


Q ss_pred             EEee
Q psy12697        598 VFKN  601 (602)
Q Consensus       598 v~i~  601 (602)
                      |+|.
T Consensus       510 vrlw  513 (524)
T 2j04_B          510 LTLE  513 (524)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            9985

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=7e-39  Score=312.63  Aligned_cols=292  Identities=16%  Similarity=0.278  Sum_probs=241.4

Q ss_pred             eeccCCceEEEEECCC----CCeEEEeeCCceEEEEecCCceeEEEeeccCceEEEEeCCCCCCCCCCCCcccccccccc
Q psy12697        136 LTRHTEPVYSVAFSPD----GKFLASGSFDKCVHIWSARTGQLVHSYKGTGGIFEVCWNSRGTPPNPPESMEVDASIEIP  211 (602)
Q Consensus       136 l~~h~~~V~~~~~s~d----~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (602)
                      ..+|.++|++++|+|+    ...+++++.++.|++||+.+++.+..++.                               
T Consensus        14 ~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~-------------------------------   62 (366)
T 3k26_A           14 KEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQS-------------------------------   62 (366)
T ss_dssp             ECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEE-------------------------------
T ss_pred             ecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeee-------------------------------
Confidence            4589999999999984    45666677777999999998887765542                               


Q ss_pred             CCcceEeeCCCcceEEEEEcCC----CCEEEEeeCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEe
Q psy12697        212 QSKATKLIGHESEVFICAWNPV----KDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLD  287 (602)
Q Consensus       212 ~~~~~~l~~h~~~v~~~~~~~~----~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  287 (602)
                          .....|...|.+++|+|+    +.+|++++.||.|++||+.+++..     .           ....|...|.+++
T Consensus        63 ----~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~-----~-----------~~~~~~~~i~~~~  122 (366)
T 3k26_A           63 ----YVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCI-----K-----------HYVGHGNAINELK  122 (366)
T ss_dssp             ----EECSCTTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEE-----E-----------EEESCCSCEEEEE
T ss_pred             ----ccccCCCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEe-----e-----------eecCCCCcEEEEE
Confidence                111237788999999999    669999999999999999876431     1           1123578999999


Q ss_pred             eCC-CCCeEEEEeCCCeEEEEcCC-Ccceeec---ccccCCeEEEEEccCCCEEEEEecCCcEEEEeCCCCceeEEeee-
Q psy12697        288 WNN-NGSFLATGSYDGYARIWTSD-GSLKSTL---GQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSF-  361 (602)
Q Consensus       288 ~~~-~~~~l~~~~~dg~i~i~~~~-~~~~~~~---~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~-  361 (602)
                      |+| ++++|++++.||.|++||+. +.....+   ..|...|.+++|+|++++|++++.||.|++||+++++....+.. 
T Consensus       123 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~  202 (366)
T 3k26_A          123 FHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKES  202 (366)
T ss_dssp             ECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHH
T ss_pred             ECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCcccccccee
Confidence            999 99999999999999999987 4555555   68999999999999999999999999999999998765544333 


Q ss_pred             ---------------------------ccCCeeeeeccCCCeEEEeeCCCeEEEEEcCCCce--------------eeEe
Q psy12697        362 ---------------------------HSAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKP--------------VKSF  400 (602)
Q Consensus       362 ---------------------------~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~--------------~~~~  400 (602)
                                                 +...+.++.|+ +..+++++.|+.|++||+.+.+.              +..+
T Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~  281 (366)
T 3k26_A          203 YDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL-GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRF  281 (366)
T ss_dssp             HTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE-TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEE
T ss_pred             EEecCCCCcccccceeeccCccccccCCcceEEEEEEc-CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccc
Confidence                                       78889999998 77899999999999999987644              7788


Q ss_pred             ccCCCCeEEEEECCC--CCEEEEEECCCeEEEEeCCCCeeeE----eeccccccEEEEEECCCCCCCCCCCcceeeeeee
Q psy12697        401 EGHTNEVNAIKWDPQ--GLLLASCSDDMTLKIWSLDKDNCVH----DLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKS  474 (602)
Q Consensus       401 ~~~~~~i~~~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~~----~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~  474 (602)
                      ..|...|.+++|+|+  +++|++++.||.|++||+.+++...    .+..|                             
T Consensus       282 ~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~-----------------------------  332 (366)
T 3k26_A          282 DYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHH-----------------------------  332 (366)
T ss_dssp             ECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGGGCEEEEECCT-----------------------------
T ss_pred             cccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCccccceEEccc-----------------------------
Confidence            889999999999999  9999999999999999998875432    22221                             


Q ss_pred             ccCCccCCeEEEEEccCCCEEEEEeCCCeEEEEeCCC
Q psy12697        475 TLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAAS  511 (602)
Q Consensus       475 ~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~~~  511 (602)
                         .|...|.+++|+|++++|++++.||.|++||+.+
T Consensus       333 ---~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~  366 (366)
T 3k26_A          333 ---KCGAAIRQTSFSRDSSILIAVCDDASIWRWDRLR  366 (366)
T ss_dssp             ---TCCSCEEEEEECTTSSEEEEEETTSEEEEEEC--
T ss_pred             ---ccCCceEEEEeCCCCCeEEEEeCCCEEEEEEecC
Confidence               1367888999999999999999999999999853

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=1.7e-38  Score=309.85  Aligned_cols=307  Identities=17%  Similarity=0.311  Sum_probs=257.4

Q ss_pred             CCCCceeEEeeCCC----CCeEEEEeCCCeEEEEcCC-Ccceeeccc-----ccCCeEEEEEccC----CCEEEEEecCC
Q psy12697        278 PSNKDVTSLDWNNN----GSFLATGSYDGYARIWTSD-GSLKSTLGQ-----HKGPIFALKWNKR----GNYILSAGVDK  343 (602)
Q Consensus       278 ~~~~~i~~~~~~~~----~~~l~~~~~dg~i~i~~~~-~~~~~~~~~-----~~~~i~~~~~~~~----~~~l~~~~~dg  343 (602)
                      .|...|++++|+|+    ...+++++.++.|++|+.. +.....+..     |...|.+++|+|+    +++|++++.||
T Consensus        16 ~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg   95 (366)
T 3k26_A           16 DHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRG   95 (366)
T ss_dssp             TTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEETTC
T ss_pred             CCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecCCC
Confidence            46789999999984    5667777788899999987 444444443     5578999999999    67999999999


Q ss_pred             cEEEEeCCCCceeEEeeeccCCeeeeeccC-C-CeEEEeeCCCeEEEEEcCCCceeeEe---ccCCCCeEEEEECCCCCE
Q psy12697        344 TTIIWDAASGQCEQQFSFHSAPALDVDWQS-N-TSFASCSTDQHIHVCKLHSDKPVKSF---EGHTNEVNAIKWDPQGLL  418 (602)
Q Consensus       344 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~i~i~d~~~~~~~~~~---~~~~~~i~~~~~~~~~~~  418 (602)
                      .|++||+.+++.+..+..|...+.++.|+| + ..+++++.||.|++||+++++.+..+   .+|...|.+++|+|++++
T Consensus        96 ~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  175 (366)
T 3k26_A           96 IIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEK  175 (366)
T ss_dssp             EEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECTTSSE
T ss_pred             EEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEECCCCCE
Confidence            999999999999999999999999999998 5 56899999999999999999988888   789999999999999999


Q ss_pred             EEEEECCCeEEEEeCCCCeeeEeeccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEE
Q psy12697        419 LASCSDDMTLKIWSLDKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSA  498 (602)
Q Consensus       419 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~  498 (602)
                      |++++.||.|++||+++++....+..      .+.++|++....................|...|.+++|+  +++|+++
T Consensus       176 l~~~~~dg~i~i~d~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~  247 (366)
T 3k26_A          176 IMSCGMDHSLKLWRINSKRMMNAIKE------SYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSK  247 (366)
T ss_dssp             EEEEETTSCEEEEESCSHHHHHHHHH------HHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEEEEE
T ss_pred             EEEecCCCCEEEEECCCCccccccce------eEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCEEEEE
Confidence            99999999999999998776655543      234455555544444444444445666799999999999  7799999


Q ss_pred             eCCCeEEEEeCCCCce--------------eeeecccCCCeeEeeecCC--c-eEEEeeCCCcEEEeecCCCCcee----
Q psy12697        499 GVDKTTIIWDAASGQC--------------EQQFSFHSAPALDVDWQSN--T-SFASCSTDQHIHVCKLHSDKPVK----  557 (602)
Q Consensus       499 ~~dg~i~iwd~~~~~~--------------~~~~~~~~~~v~~~~~s~~--~-~l~~~~~d~~i~iw~~~~~~~~~----  557 (602)
                      +.||.|++||+.++..              +..+..|...|.+++|+|+  + +|++++.||.|++||+.++++..    
T Consensus       248 ~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~  327 (366)
T 3k26_A          248 SCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCT  327 (366)
T ss_dssp             CSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGGGCEEE
T ss_pred             ecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCccccce
Confidence            9999999999988754              7788889999999999999  8 99999999999999999876543    


Q ss_pred             eeecccccceEEEEecCCcEEEEEECCCCCeEEEeccCCeEEee
Q psy12697        558 SFEGHTTGQLVHSYKGTGGIFEVCWNSRGDKVGASASDGSVFKN  601 (602)
Q Consensus       558 ~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~v~i~  601 (602)
                      .+.++.         ....|.+++|+|++++|++++.||.|+|.
T Consensus       328 ~~~~~~---------~~~~v~~~~~s~~~~~l~s~~~dg~i~iw  362 (366)
T 3k26_A          328 TLTHHK---------CGAAIRQTSFSRDSSILIAVCDDASIWRW  362 (366)
T ss_dssp             EECCTT---------CCSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred             EEcccc---------cCCceEEEEeCCCCCeEEEEeCCCEEEEE
Confidence            333331         13789999999999999999999999874

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=7.2e-38  Score=307.21  Aligned_cols=284  Identities=15%  Similarity=0.227  Sum_probs=232.9

Q ss_pred             eEeeCCCcceEEEEEcCCC-CEEEEeeCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEeeCC-CCC
Q psy12697        216 TKLIGHESEVFICAWNPVK-DFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNN-NGS  293 (602)
Q Consensus       216 ~~l~~h~~~v~~~~~~~~~-~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~  293 (602)
                      ..+.+|...|.+++|+|++ ++|++++.||.|++||+.++......              ....|...|.+++|+| +++
T Consensus        67 ~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~--------------~~~~h~~~v~~~~~~~~~~~  132 (383)
T 3ei3_B           67 RTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFI--------------QGMGPGDAITGMKFNQFNTN  132 (383)
T ss_dssp             EEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEE--------------CCCSTTCBEEEEEEETTEEE
T ss_pred             EeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceee--------------ecCCcCCceeEEEeCCCCCC
Confidence            4567899999999999999 99999999999999999876542110              0123678999999999 789


Q ss_pred             eEEEEeCCCeEEEEcCCCcceeecccc---cCCeEEEEEccCCCEEEEEecCCcEEEEeCCCCceeEEeeeccCCeeeee
Q psy12697        294 FLATGSYDGYARIWTSDGSLKSTLGQH---KGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVD  370 (602)
Q Consensus       294 ~l~~~~~dg~i~i~~~~~~~~~~~~~~---~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~  370 (602)
                      +|++++.|+.|++||+.+.....+..+   ...|.+++|+|++++|++++.|+.|++||++ ++                
T Consensus       133 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~-~~----------------  195 (383)
T 3ei3_B          133 QLFVSSIRGATTLRDFSGSVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLD-GH----------------  195 (383)
T ss_dssp             EEEEEETTTEEEEEETTSCEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETT-SC----------------
T ss_pred             EEEEEeCCCEEEEEECCCCceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECC-CC----------------
Confidence            999999999999999998776666544   4789999999999999999999999999973 22                


Q ss_pred             ccCCCeEEEeeCCCeEEEEEcCCCceeeEeccCCCCeEEEEECCCCC-EEEEEECCCeEEEEeCCCC----eeeEeeccc
Q psy12697        371 WQSNTSFASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGL-LLASCSDDMTLKIWSLDKD----NCVHDLQAH  445 (602)
Q Consensus       371 ~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~----~~~~~~~~~  445 (602)
                                               ++..+.+|...|.+++|+|+++ +|++++.|+.|++||+++.    ..+..+   
T Consensus       196 -------------------------~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~---  247 (383)
T 3ei3_B          196 -------------------------EIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM---  247 (383)
T ss_dssp             -------------------------EEEEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE---
T ss_pred             -------------------------EEEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe---
Confidence                                     2344567888999999999999 9999999999999999873    222222   


Q ss_pred             cccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEcc-CCCEEEEEeCCCeEEEEeCCCCceeeeecccC--
Q psy12697        446 NKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNK-RGNYILSAGVDKTTIIWDAASGQCEQQFSFHS--  522 (602)
Q Consensus       446 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~--  522 (602)
                                                      +|...|.+++|+| ++++|++++.|+.|++||+.+++....+..|.  
T Consensus       248 --------------------------------~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~  295 (383)
T 3ei3_B          248 --------------------------------PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHR  295 (383)
T ss_dssp             --------------------------------ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBC
T ss_pred             --------------------------------cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCcccccccccccc
Confidence                                            2667888889999 99999999999999999999998877776553  


Q ss_pred             ---------------CCeeEeeecCCceEEEeeCCCcEEEeecCCCCceeeeecccccceEEEEecCCcEEEEEECCCCC
Q psy12697        523 ---------------APALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEGHTTGQLVHSYKGTGGIFEVCWNSRGD  587 (602)
Q Consensus       523 ---------------~~v~~~~~s~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~  587 (602)
                                     ..+..++|+|++.+ +++.|+.|++||+.+++++..+.++.         ..+.+..++|+|+|+
T Consensus       296 ~~~~~~~~~~~~~p~~~~~~~~~s~dg~~-s~s~d~~i~iwd~~~~~~~~~l~~~~---------~~~~~~~~~~s~~g~  365 (383)
T 3ei3_B          296 QFQHLTPIKATWHPMYDLIVAGRYPDDQL-LLNDKRTIDIYDANSGGLVHQLRDPN---------AAGIISLNKFSPTGD  365 (383)
T ss_dssp             CCTTSCCCCCEECSSSSEEEEECBCCTTT-CTTCCCCEEEEETTTCCEEEEECBTT---------BCSCCCEEEECTTSS
T ss_pred             ccccccceEEeccCCCCceEEEecCCccc-ccCCCCeEEEEecCCCceeeeecCCC---------CCceEEEEEEecCcc
Confidence                           33445777777744 88899999999999998888877643         125577789999999


Q ss_pred             eEEEeccCCeEEee
Q psy12697        588 KVGASASDGSVFKN  601 (602)
Q Consensus       588 ~l~~~~~dg~v~i~  601 (602)
                      +|++++ ||.|+|+
T Consensus       366 ~l~s~s-d~~i~iw  378 (383)
T 3ei3_B          366 VLASGM-GFNILIW  378 (383)
T ss_dssp             EEEEEE-TTEEEEE
T ss_pred             EEEEec-CCcEEEE
Confidence            999996 8999874

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.1e-37  Score=296.91  Aligned_cols=285  Identities=23%  Similarity=0.352  Sum_probs=244.9

Q ss_pred             ceEeeCCCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEeeCCCCCe
Q psy12697        215 ATKLIGHESEVFICAWNPVKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSF  294 (602)
Q Consensus       215 ~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  294 (602)
                      ...+.+|...|.+++| |++++|++++.||.|++||+.++...     ..           ...+...|.+++|+|++++
T Consensus        11 ~~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~-----~~-----------~~~~~~~v~~~~~~~~~~~   73 (313)
T 3odt_A           11 SATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLG-----TV-----------VYTGQGFLNSVCYDSEKEL   73 (313)
T ss_dssp             EEEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEE-----EE-----------EEECSSCEEEEEEETTTTE
T ss_pred             HHHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEE-----EE-----------eecCCccEEEEEECCCCCE
Confidence            3667899999999999 99999999999999999999664321     11           1124688999999999999


Q ss_pred             EEEEeCCCeEEEEcCCC----cceeecccccCCeEEEEEccCCCEEEEEecCCcEEEEeCCCCceeEEeeeccCCeeeee
Q psy12697        295 LATGSYDGYARIWTSDG----SLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVD  370 (602)
Q Consensus       295 l~~~~~dg~i~i~~~~~----~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~  370 (602)
                      +++++.||.+++|++..    .....+..|...|.++.|  +++++++++.||.|++||  .++....+..+...+.++.
T Consensus        74 l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~  149 (313)
T 3odt_A           74 LLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAK  149 (313)
T ss_dssp             EEEEETTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEE
T ss_pred             EEEecCCCeEEEEEeeecCCCCcccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEc--CCcEEEecccCCCceeEEE
Confidence            99999999999999753    446677889999999999  577999999999999999  6778888888999999999


Q ss_pred             ccC--CCeEEEeeCCCeEEEEEcCCCceeeEecc-CCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeeeEeeccccc
Q psy12697        371 WQS--NTSFASCSTDQHIHVCKLHSDKPVKSFEG-HTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHDLQAHNK  447 (602)
Q Consensus       371 ~~~--~~~~~~~~~~~~i~i~d~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~  447 (602)
                      |.+  +..+++++.++.|++||  ..+....+.. |...+.+++|+|++. +++++.||.|++||+++++.+..+..|  
T Consensus       150 ~~~~~~~~l~~~~~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~--  224 (313)
T 3odt_A          150 VVSFSENKFLTASADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEGH--  224 (313)
T ss_dssp             EEETTTTEEEEEETTSCEEEEE--TTEEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEECC--
T ss_pred             EccCCCCEEEEEECCCCEEEEe--cCceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhhcC--
Confidence            876  57899999999999999  5566677777 889999999999998 999999999999999998888777654  


Q ss_pred             cEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeeecccCCCeeE
Q psy12697        448 EIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALD  527 (602)
Q Consensus       448 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~  527 (602)
                                                      ...|.+++|+|++ .|++++.||.|++||+.+++++..+..|..+|.+
T Consensus       225 --------------------------------~~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~  271 (313)
T 3odt_A          225 --------------------------------ESFVYCIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQVITLPAISIWS  271 (313)
T ss_dssp             --------------------------------SSCEEEEEECTTS-CEEEEETTSEEEEECTTTCCEEEEEECSSSCEEE
T ss_pred             --------------------------------CceEEEEEEecCC-CEEEEecCCEEEEEECCCCceeEEEeccCceEEE
Confidence                                            4455566666677 5899999999999999999999999999999999


Q ss_pred             eeecCCceEEEeeCCCcEEEeecCCCCceee
Q psy12697        528 VDWQSNTSFASCSTDQHIHVCKLHSDKPVKS  558 (602)
Q Consensus       528 ~~~s~~~~l~~~~~d~~i~iw~~~~~~~~~~  558 (602)
                      ++|+|++.+++++.||.|++|++++++.+..
T Consensus       272 ~~~~~~~~~~~~~~dg~i~iw~~~~~~~~~~  302 (313)
T 3odt_A          272 VDCMSNGDIIVGSSDNLVRIFSQEKSRWASE  302 (313)
T ss_dssp             EEECTTSCEEEEETTSCEEEEESCGGGCCC-
T ss_pred             EEEccCCCEEEEeCCCcEEEEeCCCCceeeh
Confidence            9999999778899999999999987765443

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=8.3e-39  Score=313.31  Aligned_cols=319  Identities=14%  Similarity=0.214  Sum_probs=232.2

Q ss_pred             eeccCCceEEEEECCCCCeEEEeeCCceEEEEecCCce--eEEEeeccCceEEEEeCCCCCCCCCCCCccccccccccCC
Q psy12697        136 LTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQ--LVHSYKGTGGIFEVCWNSRGTPPNPPESMEVDASIEIPQS  213 (602)
Q Consensus       136 l~~h~~~V~~~~~s~d~~~l~s~~~d~~v~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  213 (602)
                      +..|.++|++++|+|++++||+++.|+.|+|||+.++.  .+                                      
T Consensus         7 ~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~--------------------------------------   48 (377)
T 3dwl_C            7 LHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHA--------------------------------------   48 (377)
T ss_dssp             EEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEEC--------------------------------------
T ss_pred             EecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEE--------------------------------------
Confidence            44577899999999999999999999999999998873  33                                      


Q ss_pred             cceEeeCCCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEeeCCCCC
Q psy12697        214 KATKLIGHESEVFICAWNPVKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGS  293 (602)
Q Consensus       214 ~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  293 (602)
                        ..+.+|...|.+++|+|++++|++++.|+.|++||+.++.....  ..           ....|...|.+++|+|+++
T Consensus        49 --~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~--~~-----------~~~~~~~~v~~~~~~~~~~  113 (377)
T 3dwl_C           49 --RTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQ--TL-----------VLLRLNRAATFVRWSPNED  113 (377)
T ss_dssp             --CCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC------CCCC--EE-----------ECCCCSSCEEEEECCTTSS
T ss_pred             --EEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCceee--ee-----------EecccCCceEEEEECCCCC
Confidence              34567999999999999999999999999999999987751110  00           1223578899999999999


Q ss_pred             eEEEEeCCCeEEEEcCCCc----ceeeccc-ccCCeEEEEEccCCCEEEEEecCCcEEEEeCC-----------------
Q psy12697        294 FLATGSYDGYARIWTSDGS----LKSTLGQ-HKGPIFALKWNKRGNYILSAGVDKTTIIWDAA-----------------  351 (602)
Q Consensus       294 ~l~~~~~dg~i~i~~~~~~----~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~-----------------  351 (602)
                      +|++++.|+.|++||++..    ....+.. |...|.+++|+|++++|++++.|+.|++||+.                 
T Consensus       114 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~  193 (377)
T 3dwl_C          114 KFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRL  193 (377)
T ss_dssp             CCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCC
T ss_pred             EEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCcccccccccc
Confidence            9999999999999998754    3566666 99999999999999999999999999999985                 


Q ss_pred             -CCceeEEeeeccCCeeeeeccCCC-eEEEeeCCCeEEEEEcCCCce----eeEeccCCCCeEEEEECCCCCEEEEEECC
Q psy12697        352 -SGQCEQQFSFHSAPALDVDWQSNT-SFASCSTDQHIHVCKLHSDKP----VKSFEGHTNEVNAIKWDPQGLLLASCSDD  425 (602)
Q Consensus       352 -~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~i~d~~~~~~----~~~~~~~~~~i~~~~~~~~~~~l~~~~~d  425 (602)
                       .+++...+ .|...+.+++|+|++ .+++++.|+.|++||+.+++.    +..+.+|...|.+++|+|++++|++++.+
T Consensus       194 ~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~  272 (377)
T 3dwl_C          194 PFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANESAIVAAGYNY  272 (377)
T ss_dssp             CEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEEECCCEECSSSCEEEEEEEETTEEEEEESSS
T ss_pred             chhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcceeeEeecCCCCceEEEEEcCCCCEEEEEcCC
Confidence             34455556 788899999999986 488999999999999999987    88899999999999999999999999877


Q ss_pred             CeEEEEeCCCCe--eeEeecccc---------------ccEEEEEECCCCCCCCCCCcce-eeeeeeccCCccCCeEEEE
Q psy12697        426 MTLKIWSLDKDN--CVHDLQAHN---------------KEIYTIKWSPTGPETSNPNMSL-IFILKSTLGQHKGPIFALK  487 (602)
Q Consensus       426 g~i~iwd~~~~~--~~~~~~~~~---------------~~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~v~~i~  487 (602)
                      +.+ +|+.....  ....+....               .....+.|++............ ..........|...|++++
T Consensus       273 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~  351 (377)
T 3dwl_C          273 SPI-LLQGNESGWAHTRDLDAGTSKTSFTHTGNTGEGREEEGPVSFTALRSTFRNMDLKGSSQSISSLPTVHQNMIATLR  351 (377)
T ss_dssp             SEE-EECCCC---CCSBCCCSCCCCCCBSSSSSBCCCCCC-------------------------CCCSSSCSSCEEEEE
T ss_pred             cEE-EEEeCCCceEEEeeecccccccccccccccccccccccccccccccccccchhhccccccccccCccccceeEEEe
Confidence            766 66655322  111111110               0022222221111100000000 0011223445999999999


Q ss_pred             EccCC-C---EEEEEeCCCeEEEEeC
Q psy12697        488 WNKRG-N---YILSAGVDKTTIIWDA  509 (602)
Q Consensus       488 ~s~~~-~---~l~s~~~dg~i~iwd~  509 (602)
                      +.+.. .   .|+|++.||.|++||+
T Consensus       352 ~~~~~~~~~~~~~s~g~Dg~i~iWdl  377 (377)
T 3dwl_C          352 PYAGTPGNITAFTSSGTDGRVVLWTL  377 (377)
T ss_dssp             EEEEETTEEEEEEEEETTSEEEEECC
T ss_pred             ccCCCCCceEEEEeecCCCcEEEecC
Confidence            76643 3   6999999999999985

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=5.3e-37  Score=304.35  Aligned_cols=291  Identities=22%  Similarity=0.440  Sum_probs=235.5

Q ss_pred             ceEEEEECCCCCeEEEeeCCceEEEEecCCceeEEEeeccCceEEEEeCCCCCCCCCCCCccccccccccCCcceEeeCC
Q psy12697        142 PVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKGTGGIFEVCWNSRGTPPNPPESMEVDASIEIPQSKATKLIGH  221 (602)
Q Consensus       142 ~V~~~~~s~d~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h  221 (602)
                      .++.|+||++ ++||+|. |++|+|||..+|+.+..+.                                      +.+|
T Consensus       107 y~~~l~wS~~-n~lAvgl-d~tV~lWd~~tg~~~~~~~--------------------------------------~~~~  146 (420)
T 4gga_A          107 YLNLVDWSSG-NVLAVAL-DNSVYLWSASSGDILQLLQ--------------------------------------MEQP  146 (420)
T ss_dssp             TCBCEEECTT-SEEEEEE-TTEEEEEETTTCCEEEEEE--------------------------------------CCST
T ss_pred             cceeEEECCC-CEEEEEe-CCEEEEEECCCCCEEEEEE--------------------------------------ecCC
Confidence            4678999986 4777764 9999999999998876543                                      3468


Q ss_pred             CcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEeeCCCCCeEEEEeCC
Q psy12697        222 ESEVFICAWNPVKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFLATGSYD  301 (602)
Q Consensus       222 ~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d  301 (602)
                      ...|++++|+|++++|++|+.||.|++||+.+++...                ....|...+.+++++  +..+++|+.|
T Consensus       147 ~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~----------------~~~~h~~~v~~~s~~--~~~l~sgs~d  208 (420)
T 4gga_A          147 GEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLR----------------NMTSHSARVGSLSWN--SYILSSGSRS  208 (420)
T ss_dssp             TCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEE----------------EECCCSSCEEEEEEE--TTEEEEEETT
T ss_pred             CCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEE----------------EEeCCCCceEEEeeC--CCEEEEEeCC
Confidence            8899999999999999999999999999998764321                112356778888775  6799999999


Q ss_pred             CeEEEEcCC--CcceeecccccCCeEEEEEccCCCEEEEEecCCcEEEEeCCCCceeEEeeeccCCeeeeeccCCCeEEE
Q psy12697        302 GYARIWTSD--GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTSFAS  379 (602)
Q Consensus       302 g~i~i~~~~--~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  379 (602)
                      +.+++|+..  ......+..|...+..+.|+|+++++++++.|+.+++|+..+++...                      
T Consensus       209 ~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~----------------------  266 (420)
T 4gga_A          209 GHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGW----------------------  266 (420)
T ss_dssp             SEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCS----------------------
T ss_pred             CceeEeeecccceeeEEecccccceeeeeecCCCCeeeeeeccccceEEeeccccccc----------------------
Confidence            999999976  44566788999999999999999999999999999999988654211                      


Q ss_pred             eeCCCeEEEEEcCCCceeeEeccCCCCeEEEEECCCC-CEEEEE--ECCCeEEEEeCCCCeeeEeeccccccEEEEEECC
Q psy12697        380 CSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQG-LLLASC--SDDMTLKIWSLDKDNCVHDLQAHNKEIYTIKWSP  456 (602)
Q Consensus       380 ~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~--~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~  456 (602)
                                     ..+.....|...|.+++|+|++ .+++++  +.|+.|++||+.++++...+..            
T Consensus       267 ---------------~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~------------  319 (420)
T 4gga_A          267 ---------------VPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDA------------  319 (420)
T ss_dssp             ---------------CCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEEC------------
T ss_pred             ---------------eeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeecc------------
Confidence                           1234456688899999999965 455554  4799999999999988776653            


Q ss_pred             CCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEe--CCCeEEEEeCCCCceeeeecccCCCeeEeeecCCc
Q psy12697        457 TGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAG--VDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNT  534 (602)
Q Consensus       457 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~  534 (602)
                                             ...+.++.|+|+++.+++++  .|+.|+|||+.+++++..+.+|.+.|++++|+|||
T Consensus       320 -----------------------~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~spdg  376 (420)
T 4gga_A          320 -----------------------HSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDG  376 (420)
T ss_dssp             -----------------------SSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTS
T ss_pred             -----------------------ccceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCC
Confidence                                   23566777788888888765  78999999999999999999999999999999999


Q ss_pred             -eEEEeeCCCcEEEeecCCCCceeeeecc
Q psy12697        535 -SFASCSTDQHIHVCKLHSDKPVKSFEGH  562 (602)
Q Consensus       535 -~l~~~~~d~~i~iw~~~~~~~~~~~~~~  562 (602)
                       +|++|+.|++|+|||+....+....+.+
T Consensus       377 ~~l~S~s~D~tvriWdv~~~~~~~~~~~~  405 (420)
T 4gga_A          377 ATVASAAADETLRLWRCFELDPARRRERE  405 (420)
T ss_dssp             SCEEEEETTTEEEEECCSCSSCC------
T ss_pred             CEEEEEecCCeEEEEECCCCCccchhhhc
Confidence             9999999999999999877665554433

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=100.00  E-value=7.1e-38  Score=303.34  Aligned_cols=293  Identities=13%  Similarity=0.130  Sum_probs=225.9

Q ss_pred             CcceEEEEEcCCCCEEEEeeCCC-------cEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEeeCCCCCe
Q psy12697        222 ESEVFICAWNPVKDFLASGSGDS-------TARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSF  294 (602)
Q Consensus       222 ~~~v~~~~~~~~~~~l~s~~~dg-------~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  294 (602)
                      ..||++++|+|++++|++|+.+.       .|++|++..................      ...+...+.+++++  ++.
T Consensus        14 g~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~------l~~~~~~v~s~~~~--~~~   85 (365)
T 4h5i_A           14 GYPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFA------LEDNDDSPTAIDAS--KGI   85 (365)
T ss_dssp             SSCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEE------CCTTSCCCCEEEEE--TTE
T ss_pred             CCCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEE------ccCCCCceEEEEeC--CCE
Confidence            46899999999999999997644       5999999876543322222222111      12345567777664  446


Q ss_pred             EEEEe-----------CCCeEEEEcCCCc--cee--------ecccccCCeEEEEEccCCCEEEEEe--cCCcEEEEeCC
Q psy12697        295 LATGS-----------YDGYARIWTSDGS--LKS--------TLGQHKGPIFALKWNKRGNYILSAG--VDKTTIIWDAA  351 (602)
Q Consensus       295 l~~~~-----------~dg~i~i~~~~~~--~~~--------~~~~~~~~i~~~~~~~~~~~l~~~~--~dg~i~~wd~~  351 (602)
                      +++|.           .|+.+++|+....  ...        ....+...+.+++|+|||+++++++  .|++|++||++
T Consensus        86 ~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~  165 (365)
T 4h5i_A           86 ILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPS  165 (365)
T ss_dssp             EEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETT
T ss_pred             EEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECC
Confidence            66653           4678999986421  111        1123455689999999999987554  68999999999


Q ss_pred             CCceeEEeeeccCCeeeeeccCCCeEEEeeCCCeEEEEEcCCCceee--EeccCCCCeEEEEECCCCCEEEEEECCC---
Q psy12697        352 SGQCEQQFSFHSAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVK--SFEGHTNEVNAIKWDPQGLLLASCSDDM---  426 (602)
Q Consensus       352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~--~~~~~~~~i~~~~~~~~~~~l~~~~~dg---  426 (602)
                      +++++..+. +...|.+++|+|++.+++.+.++.+.+|+..+++.+.  ....|...|.+++|+|+++++++++.|+   
T Consensus       166 ~~~~~~~~~-~~~~V~~v~fspdg~~l~s~s~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~  244 (365)
T 4h5i_A          166 DLTEKFEIE-TRGEVKDLHFSTDGKVVAYITGSSLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKG  244 (365)
T ss_dssp             TTEEEEEEE-CSSCCCEEEECTTSSEEEEECSSCEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCC
T ss_pred             CCcEEEEeC-CCCceEEEEEccCCceEEeccceeEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcce
Confidence            999988876 6678999999999887777778888888888877654  3456888999999999999999999887   


Q ss_pred             -eEEEEeCCCCeeeEeeccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCCCeEE
Q psy12697        427 -TLKIWSLDKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTI  505 (602)
Q Consensus       427 -~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~  505 (602)
                       .+++|++.........                              ...+.+|..+|++++|||||++||+|+.|++|+
T Consensus       245 ~~i~~~~~~~~~~~~~~------------------------------~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~  294 (365)
T 4h5i_A          245 IVLTKISIKSGNTSVLR------------------------------SKQVTNRFKGITSMDVDMKGELAVLASNDNSIA  294 (365)
T ss_dssp             EEEEEEEEETTEEEEEE------------------------------EEEEESSCSCEEEEEECTTSCEEEEEETTSCEE
T ss_pred             eEEeecccccceeccee------------------------------eeeecCCCCCeEeEEECCCCCceEEEcCCCEEE
Confidence             6888887655432110                              112345778889999999999999999999999


Q ss_pred             EEeCCCCceeeee-cccCCCeeEeeecCCc-eEEEeeCCCcEEEeecCCC
Q psy12697        506 IWDAASGQCEQQF-SFHSAPALDVDWQSNT-SFASCSTDQHIHVCKLHSD  553 (602)
Q Consensus       506 iwd~~~~~~~~~~-~~~~~~v~~~~~s~~~-~l~~~~~d~~i~iw~~~~~  553 (602)
                      |||+.+++++..+ .+|..+|++++|+||| +||+++.|++|+||++...
T Consensus       295 iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~  344 (365)
T 4h5i_A          295 LVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKLPLN  344 (365)
T ss_dssp             EEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred             EEECCCCcEEEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence            9999999999875 7899999999999999 9999999999999999643

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=9.3e-37  Score=300.75  Aligned_cols=296  Identities=21%  Similarity=0.343  Sum_probs=240.0

Q ss_pred             eeeeccCCceEEEEECCCCCeEEEeeCCceEEEEecCCceeEEEeeccCceEEEEeCCCCCCCCCCCCccccccccccCC
Q psy12697        134 NTLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKGTGGIFEVCWNSRGTPPNPPESMEVDASIEIPQS  213 (602)
Q Consensus       134 ~~l~~h~~~V~~~~~s~d~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  213 (602)
                      ....+|...+.+..+++++..+++++.|+.|++||+.+++....+.                                  
T Consensus        85 ~~~~~~~~~~~~~~~~~s~~~l~~~~~d~~v~lw~~~~~~~~~~~~----------------------------------  130 (401)
T 4aez_A           85 LDAPGIIDDYYLNLLDWSNLNVVAVALERNVYVWNADSGSVSALAE----------------------------------  130 (401)
T ss_dssp             EECTTCCCCTTCBCEEECTTSEEEEEETTEEEEEETTTCCEEEEEE----------------------------------
T ss_pred             eeCCCCcCCceEEEEeecCCCEEEEECCCeEEEeeCCCCcEeEeee----------------------------------
Confidence            3445676664443333335678899999999999999998775432                                  


Q ss_pred             cceEeeCCCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEeeCCCCC
Q psy12697        214 KATKLIGHESEVFICAWNPVKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGS  293 (602)
Q Consensus       214 ~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  293 (602)
                           ..|...|.+++|+|++++|++++.||.|++||+.+++...                ....|...|.+++|  +++
T Consensus       131 -----~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~----------------~~~~~~~~v~~~~~--~~~  187 (401)
T 4aez_A          131 -----TDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLR----------------TMAGHQARVGCLSW--NRH  187 (401)
T ss_dssp             -----CCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEE----------------EECCCSSCEEEEEE--ETT
T ss_pred             -----cCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEE----------------EecCCCCceEEEEE--CCC
Confidence                 2378899999999999999999999999999998764321                11245788999999  467


Q ss_pred             eEEEEeCCCeEEEEcCC--CcceeecccccCCeEEEEEccCCCEEEEEecCCcEEEEeCCCCceeEEeeeccCCeeeeec
Q psy12697        294 FLATGSYDGYARIWTSD--GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDW  371 (602)
Q Consensus       294 ~l~~~~~dg~i~i~~~~--~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~  371 (602)
                      ++++|+.||.|++||++  +.....+..|...|.+++|+|++++|++++.||.|++||+++++....+..+...+.+++|
T Consensus       188 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~  267 (401)
T 4aez_A          188 VLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAW  267 (401)
T ss_dssp             EEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEE
T ss_pred             EEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEE
Confidence            99999999999999987  4567778899999999999999999999999999999999999999999999999999999


Q ss_pred             cCCC--eEEEee--CCCeEEEEEcCCCceeeEeccCCCCeEEEEECCCCCEEEEEE--CCCeEEEEeCCCCeeeEeeccc
Q psy12697        372 QSNT--SFASCS--TDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCS--DDMTLKIWSLDKDNCVHDLQAH  445 (602)
Q Consensus       372 ~~~~--~~~~~~--~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~  445 (602)
                      +|++  .+++++  .|+.|++||+.+++++..+. +...|.+++|+|++++|++++  .||.|++||+.+++.....   
T Consensus       268 ~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~---  343 (401)
T 4aez_A          268 CPWQSNLLATGGGTMDKQIHFWNAATGARVNTVD-AGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQV---  343 (401)
T ss_dssp             CTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEE-CSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEE---
T ss_pred             CCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEe-CCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEE---
Confidence            9953  455544  79999999999999988886 667899999999999999954  8999999999876544332   


Q ss_pred             cccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeeec
Q psy12697        446 NKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFS  519 (602)
Q Consensus       446 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~  519 (602)
                                                   .+.+|...|.+++|+|+|++|++++.||.|++||+.+++.+....
T Consensus       344 -----------------------------~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~~~~~~~~~  388 (401)
T 4aez_A          344 -----------------------------DIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYDGDHVKRPI  388 (401)
T ss_dssp             -----------------------------EEECCSSCCCEEEECTTSSEEEEECTTSEEEEEECCC--------
T ss_pred             -----------------------------EecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCccccccc
Confidence                                         122467788888999999999999999999999999988775543

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=100.00  E-value=4.8e-37  Score=297.51  Aligned_cols=300  Identities=12%  Similarity=0.150  Sum_probs=219.4

Q ss_pred             CCceEEEEECCCCCeEEEeeCC-------ceEEEEecCCceeEEEeeccCceEEEEeCCCCCCCCCCCCccccccccccC
Q psy12697        140 TEPVYSVAFSPDGKFLASGSFD-------KCVHIWSARTGQLVHSYKGTGGIFEVCWNSRGTPPNPPESMEVDASIEIPQ  212 (602)
Q Consensus       140 ~~~V~~~~~s~d~~~l~s~~~d-------~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  212 (602)
                      ..+|.+++|+||+++||+|+.|       +.|++|++..+......                              .+..
T Consensus        14 g~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~------------------------------~~~~   63 (365)
T 4h5i_A           14 GYPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKE------------------------------QFHI   63 (365)
T ss_dssp             SSCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHH------------------------------HEEE
T ss_pred             CCCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceee------------------------------eeee
Confidence            4589999999999999999754       46999998765321000                              0000


Q ss_pred             CcceEeeCCCcceEEEEEcCCCCEEEEe-----------eCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCC
Q psy12697        213 SKATKLIGHESEVFICAWNPVKDFLASG-----------SGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNK  281 (602)
Q Consensus       213 ~~~~~l~~h~~~v~~~~~~~~~~~l~s~-----------~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  281 (602)
                      .....+.+|...|.+++++  ++.++++           +.|+.+++|++......    .......   .......+..
T Consensus        64 ~~~~~l~~~~~~v~s~~~~--~~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~----~~~~~~~---~~~~~~~~~~  134 (365)
T 4h5i_A           64 LSEFALEDNDDSPTAIDAS--KGIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQ----LEFLTSV---DFDASTNADD  134 (365)
T ss_dssp             EEEEECCTTSCCCCEEEEE--TTEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTE----EEEEEEE---CSSCCCCTTC
T ss_pred             eeEEEccCCCCceEEEEeC--CCEEEEEECCCccEEEEecCCCcEEEEEecCCCce----EEEeeee---ceeecCCccc
Confidence            0013456788888877765  4455554           45788999998765431    1111100   1111122345


Q ss_pred             ceeEEeeCCCCCeEEEEe--CCCeEEEEcCCCcceeecccccCCeEEEEEccCCCEEEEEecCCcEEEEeCCCCceeEE-
Q psy12697        282 DVTSLDWNNNGSFLATGS--YDGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQ-  358 (602)
Q Consensus       282 ~i~~~~~~~~~~~l~~~~--~dg~i~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~-  358 (602)
                      .+.+++|+|||+++++++  .|+.|++||...........|...|.+++|+|+|+++++++.+ .+.+|+..+++.... 
T Consensus       135 ~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~~~~~V~~v~fspdg~~l~s~s~~-~~~~~~~~~~~~~~~~  213 (365)
T 4h5i_A          135 YTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEIETRGEVKDLHFSTDGKVVAYITGS-SLEVISTVTGSCIARK  213 (365)
T ss_dssp             CEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEEECSSCCCEEEECTTSSEEEEECSS-CEEEEETTTCCEEEEE
T ss_pred             CEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEeCCCCceEEEEEccCCceEEeccce-eEEEEEeccCcceeee
Confidence            689999999999987554  6899999998754433334588899999999999999999855 577777777766543 


Q ss_pred             -eeeccCCeeeeeccCCCe-EEEeeCCC----eEEEEEcCCCce----eeEeccCCCCeEEEEECCCCCEEEEEECCCeE
Q psy12697        359 -FSFHSAPALDVDWQSNTS-FASCSTDQ----HIHVCKLHSDKP----VKSFEGHTNEVNAIKWDPQGLLLASCSDDMTL  428 (602)
Q Consensus       359 -~~~~~~~~~~~~~~~~~~-~~~~~~~~----~i~i~d~~~~~~----~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i  428 (602)
                       ...+...+.+++|+|++. +++++.++    .+..|++.....    ...+.+|...|++++|+|+|++||+|+.|+.|
T Consensus       214 ~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V  293 (365)
T 4h5i_A          214 TDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSI  293 (365)
T ss_dssp             CCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCE
T ss_pred             ecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEE
Confidence             345677899999999865 66676666    688899876643    45677899999999999999999999999999


Q ss_pred             EEEeCCCCeeeEeeccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCCCeEEEEe
Q psy12697        429 KIWSLDKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWD  508 (602)
Q Consensus       429 ~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd  508 (602)
                      +|||+++++++.++.                                 .+|..+|++++|||||++||+|+.|++|+|||
T Consensus       294 ~iwd~~~~~~~~~~~---------------------------------~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~  340 (365)
T 4h5i_A          294 ALVKLKDLSMSKIFK---------------------------------QAHSFAITEVTISPDSTYVASVSAANTIHIIK  340 (365)
T ss_dssp             EEEETTTTEEEEEET---------------------------------TSSSSCEEEEEECTTSCEEEEEETTSEEEEEE
T ss_pred             EEEECCCCcEEEEec---------------------------------CcccCCEEEEEECCCCCEEEEEeCCCeEEEEE
Confidence            999999998877642                                 23667777888888999999999999999999


Q ss_pred             CCCC
Q psy12697        509 AASG  512 (602)
Q Consensus       509 ~~~~  512 (602)
                      +...
T Consensus       341 ip~~  344 (365)
T 4h5i_A          341 LPLN  344 (365)
T ss_dssp             CCTT
T ss_pred             cCCC
Confidence            9643

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=1.3e-36  Score=286.36  Aligned_cols=248  Identities=22%  Similarity=0.351  Sum_probs=208.8

Q ss_pred             eeeeeccCCceEEEEECCCCCeEEEeeCCceEEEEecCCc--eeEEEeeccCceEEEEeCCCCCCCCCCCCccccccccc
Q psy12697        133 LNTLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTG--QLVHSYKGTGGIFEVCWNSRGTPPNPPESMEVDASIEI  210 (602)
Q Consensus       133 ~~~l~~h~~~V~~~~~s~d~~~l~s~~~d~~v~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (602)
                      +..+.+|.+.|++++|+|+|++||+|+.|++|+|||+.++  +.+                                   
T Consensus         2 ~~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~-----------------------------------   46 (297)
T 2pm7_B            2 VVIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLI-----------------------------------   46 (297)
T ss_dssp             CEECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCC-----------------------------------
T ss_pred             ceeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEE-----------------------------------
Confidence            3457899999999999999999999999999999998643  222                                   


Q ss_pred             cCCcceEeeCCCcceEEEEEcCC--CCEEEEeeCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEee
Q psy12697        211 PQSKATKLIGHESEVFICAWNPV--KDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDW  288 (602)
Q Consensus       211 ~~~~~~~l~~h~~~v~~~~~~~~--~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  288 (602)
                           ..+.+|..+|.+++|+|+  +++|++++.|++|++||+.++.....   .           ....|...|.+++|
T Consensus        47 -----~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~~~---~-----------~~~~h~~~v~~v~~  107 (297)
T 2pm7_B           47 -----DTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQI---A-----------VHAVHSASVNSVQW  107 (297)
T ss_dssp             -----EEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCBCCC---E-----------EECCCSSCEEEEEE
T ss_pred             -----EEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCceEEE---E-----------EeecCCCceeEEEe
Confidence                 556789999999999864  89999999999999999987542111   0           11235678999999


Q ss_pred             CCC--CCeEEEEeCCCeEEEEcCCCc---ceeecccccCCeEEEEEccC-------------CCEEEEEecCCcEEEEeC
Q psy12697        289 NNN--GSFLATGSYDGYARIWTSDGS---LKSTLGQHKGPIFALKWNKR-------------GNYILSAGVDKTTIIWDA  350 (602)
Q Consensus       289 ~~~--~~~l~~~~~dg~i~i~~~~~~---~~~~~~~~~~~i~~~~~~~~-------------~~~l~~~~~dg~i~~wd~  350 (602)
                      +|+  +.+|++++.||.|++||++..   ....+..|...|.+++|+|+             +++|++++.|+.|++||+
T Consensus       108 ~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~  187 (297)
T 2pm7_B          108 APHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKY  187 (297)
T ss_dssp             CCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEE
T ss_pred             CcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEE
Confidence            997  899999999999999998743   24566789999999999997             579999999999999999


Q ss_pred             CCCc----eeEEeeeccCCeeeeeccCC----CeEEEeeCCCeEEEEEcCCCc---eeeEe--ccCCCCeEEEEECCCCC
Q psy12697        351 ASGQ----CEQQFSFHSAPALDVDWQSN----TSFASCSTDQHIHVCKLHSDK---PVKSF--EGHTNEVNAIKWDPQGL  417 (602)
Q Consensus       351 ~~~~----~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~i~i~d~~~~~---~~~~~--~~~~~~i~~~~~~~~~~  417 (602)
                      ++++    ....+..|...|.+++|+|+    ..+++++.|+.|++||+.+..   ....+  ..|...|.+++|+|+++
T Consensus       188 ~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~  267 (297)
T 2pm7_B          188 NSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGN  267 (297)
T ss_dssp             ETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSC
T ss_pred             cCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCC
Confidence            8776    55677889999999999997    468999999999999998743   11233  46788999999999999


Q ss_pred             EEEEEECCCeEEEEeCC
Q psy12697        418 LLASCSDDMTLKIWSLD  434 (602)
Q Consensus       418 ~l~~~~~dg~i~iwd~~  434 (602)
                      +|++++.||.|++|+..
T Consensus       268 ~las~~~D~~v~lw~~~  284 (297)
T 2pm7_B          268 VLALSGGDNKVTLWKEN  284 (297)
T ss_dssp             CEEEEETTSCEEEEEEC
T ss_pred             EEEEEcCCCcEEEEEEC
Confidence            99999999999999976

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=2.1e-36  Score=295.70  Aligned_cols=306  Identities=17%  Similarity=0.247  Sum_probs=238.4

Q ss_pred             CCCceeEEeeCCCCCeEEEEeCCCeEEEEcCCCc---ceeecccccCCeEEEEEccCCCEEEEEecCCcEEEEeCCCCce
Q psy12697        279 SNKDVTSLDWNNNGSFLATGSYDGYARIWTSDGS---LKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQC  355 (602)
Q Consensus       279 ~~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~  355 (602)
                      |...|++++|+|++++|++++.||.|++|+....   ....+..|...|.+++|+|++++|++++.||.|++||+.+++.
T Consensus         7 ~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~   86 (372)
T 1k8k_C            7 LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTW   86 (372)
T ss_dssp             CSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEE
T ss_pred             cCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCee
Confidence            5688999999999999999999999999998765   6778889999999999999999999999999999999998876


Q ss_pred             eEEe--eeccCCeeeeeccCCC-eEEEeeCCCeEEEEEcCCCce----eeEeccCCCCeEEEEECCCCCEEEEEECCCeE
Q psy12697        356 EQQF--SFHSAPALDVDWQSNT-SFASCSTDQHIHVCKLHSDKP----VKSFEGHTNEVNAIKWDPQGLLLASCSDDMTL  428 (602)
Q Consensus       356 ~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~~~i~i~d~~~~~~----~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i  428 (602)
                      ....  ..+...+.++.|++++ .+++++.++.|++||+..++.    .....+|...|.+++|+|++++|++++.||.|
T Consensus        87 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i  166 (372)
T 1k8k_C           87 KPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKC  166 (372)
T ss_dssp             EEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCE
T ss_pred             eeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCCCCE
Confidence            5544  5578899999999875 688899999999999988763    23336788999999999999999999999999


Q ss_pred             EEEeCCCCeeeEeeccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCCCeEEEEe
Q psy12697        429 KIWSLDKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWD  508 (602)
Q Consensus       429 ~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd  508 (602)
                      ++||++...........          +.+..  ..    .......+..|...|.+++|+|++++|++++.||.|++||
T Consensus       167 ~~~d~~~~~~~~~~~~~----------~~~~~--~~----~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d  230 (372)
T 1k8k_C          167 RIFSAYIKEVEERPAPT----------PWGSK--MP----FGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLAD  230 (372)
T ss_dssp             EEEECCCTTTSCCCCCB----------TTBSC--CC----TTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEE
T ss_pred             EEEEccccccccccccc----------ccccc--cc----hhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEE
Confidence            99997632210000000          00000  00    0011123346788899999999999999999999999999


Q ss_pred             CCCCceeeeecccCCCeeEeeecCCc-eEEEeeCCCcEEEeecCC--CC--ceeeeecc------------------ccc
Q psy12697        509 AASGQCEQQFSFHSAPALDVDWQSNT-SFASCSTDQHIHVCKLHS--DK--PVKSFEGH------------------TTG  565 (602)
Q Consensus       509 ~~~~~~~~~~~~~~~~v~~~~~s~~~-~l~~~~~d~~i~iw~~~~--~~--~~~~~~~~------------------~~~  565 (602)
                      +.+++++..+..|..+|.+++|+|++ +++++ .|+.|++|++.+  ++  .+..+..+                  ..+
T Consensus       231 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  309 (372)
T 1k8k_C          231 ADKKMAVATLASETLPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKA  309 (372)
T ss_dssp             GGGTTEEEEEECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC
T ss_pred             CCCCceeEEEccCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhccccc
Confidence            99999999999999999999999999 55555 999999999987  42  11111110                  001


Q ss_pred             ceE------EEE--ecCCcEEEEEEC-CCC---CeEEEeccCCeEEee
Q psy12697        566 QLV------HSY--KGTGGIFEVCWN-SRG---DKVGASASDGSVFKN  601 (602)
Q Consensus       566 ~~~------~~~--~~~~~i~~l~~s-pdg---~~l~~~~~dg~v~i~  601 (602)
                      ...      ..+  .+...|.+++|. ++|   ++|++++.||.|+++
T Consensus       310 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W  357 (372)
T 1k8k_C          310 SSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIW  357 (372)
T ss_dssp             ---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEE
T ss_pred             ccccCccccccccccccCCcceeEEecCCCcceeeEEEecCCCceEEE
Confidence            110      111  235789999966 677   999999999999985

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=100.00  E-value=4.1e-36  Score=286.82  Aligned_cols=282  Identities=20%  Similarity=0.411  Sum_probs=226.8

Q ss_pred             eEEEEECCCCCeEEEeeCCceEEEEecCCceeEEEeeccCceEEEEeCCCCCCCCCCCCccccccccccCCcceEeeCCC
Q psy12697        143 VYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKGTGGIFEVCWNSRGTPPNPPESMEVDASIEIPQSKATKLIGHE  222 (602)
Q Consensus       143 V~~~~~s~d~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~  222 (602)
                      .++|+||+++ +||+| .|++|+|||+.+|+++..++                                      +.+|.
T Consensus        28 ~~~l~WS~~~-~lAvg-~D~tV~iWd~~tg~~~~~~~--------------------------------------~~~~~   67 (318)
T 4ggc_A           28 LNLVDWSSGN-VLAVA-LDNSVYLWSASSGDILQLLQ--------------------------------------MEQPG   67 (318)
T ss_dssp             CBCEEECTTS-EEEEE-ETTEEEEEETTTCCEEEEEE--------------------------------------CCSTT
T ss_pred             ceEEEECCCC-EEEEE-eCCEEEEEECCCCCEEEEEE--------------------------------------ecCCC
Confidence            4679999986 67765 59999999999999886543                                      34688


Q ss_pred             cceEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEeeCCCCCeEEEEeCCC
Q psy12697        223 SEVFICAWNPVKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFLATGSYDG  302 (602)
Q Consensus       223 ~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg  302 (602)
                      ..|.+++|+|++++|++|+.||+|++|++.+++...     .           ...|...+.++.  +++..+++++.++
T Consensus        68 ~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~-----~-----------~~~h~~~~~~~~--~~~~~l~s~~~~~  129 (318)
T 4ggc_A           68 EYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLR-----N-----------MTSHSARVGSLS--WNSYILSSGSRSG  129 (318)
T ss_dssp             CCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE-----E-----------EECCSSCEEEEE--EETTEEEEEETTS
T ss_pred             CeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEE-----E-----------ecCccceEEEee--cCCCEEEEEecCC
Confidence            999999999999999999999999999998765321     1           112345555544  5567999999999


Q ss_pred             eEEEEcCC--CcceeecccccCCeEEEEEccCCCEEEEEecCCcEEEEeCCCCceeEEeeeccCCeeeeeccCCCeEEEe
Q psy12697        303 YARIWTSD--GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTSFASC  380 (602)
Q Consensus       303 ~i~i~~~~--~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  380 (602)
                      .+++|+..  ......+..|...+..+.+++++++|++++.|+.|++||+++++....                      
T Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~----------------------  187 (318)
T 4ggc_A          130 HIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWV----------------------  187 (318)
T ss_dssp             EEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSC----------------------
T ss_pred             ceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCccccc----------------------
Confidence            99999976  345567788999999999999999999999999999999987643211                      


Q ss_pred             eCCCeEEEEEcCCCceeeEeccCCCCeEEEEECCCCCEE---EEEECCCeEEEEeCCCCeeeEeeccccccEEEEEECCC
Q psy12697        381 STDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLL---ASCSDDMTLKIWSLDKDNCVHDLQAHNKEIYTIKWSPT  457 (602)
Q Consensus       381 ~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l---~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~  457 (602)
                                     .......+...|.+++++|++..+   ++++.++.|++||...........              
T Consensus       188 ---------------~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~--------------  238 (318)
T 4ggc_A          188 ---------------PLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVD--------------  238 (318)
T ss_dssp             ---------------CSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEE--------------
T ss_pred             ---------------ceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEeccccccccccc--------------
Confidence                           123344567788999999976533   456778999999998766554432              


Q ss_pred             CCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEe--CCCeEEEEeCCCCceeeeecccCCCeeEeeecCCc-
Q psy12697        458 GPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAG--VDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNT-  534 (602)
Q Consensus       458 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~-  534 (602)
                                           +...+..+.|+|+++.+++++  .|+.|++||+.+++++..+.+|.+.|++++|+||+ 
T Consensus       239 ---------------------~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~spdg~  297 (318)
T 4ggc_A          239 ---------------------AHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGA  297 (318)
T ss_dssp             ---------------------CSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSS
T ss_pred             ---------------------ceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCC
Confidence                                 345567777888888877654  79999999999999999999999999999999999 


Q ss_pred             eEEEeeCCCcEEEeecCCCC
Q psy12697        535 SFASCSTDQHIHVCKLHSDK  554 (602)
Q Consensus       535 ~l~~~~~d~~i~iw~~~~~~  554 (602)
                      +|++|+.||+|+|||+.+..
T Consensus       298 ~l~S~s~D~~v~iWd~~~~d  317 (318)
T 4ggc_A          298 TVASAAADETLRLWRCFELD  317 (318)
T ss_dssp             CEEEEETTTEEEEECCSCCC
T ss_pred             EEEEEecCCeEEEEECCCCC
Confidence            99999999999999986543

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=1.9e-36  Score=298.51  Aligned_cols=288  Identities=19%  Similarity=0.341  Sum_probs=237.0

Q ss_pred             eeCCCcc--eEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEeeCCCCCeE
Q psy12697        218 LIGHESE--VFICAWNPVKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFL  295 (602)
Q Consensus       218 l~~h~~~--v~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l  295 (602)
                      ..+|...  +.+++|+  +..+++++.|+.|++|++.++....      .         ....+...|.+++|+|++++|
T Consensus        87 ~~~~~~~~~~~~~~~s--~~~l~~~~~d~~v~lw~~~~~~~~~------~---------~~~~~~~~v~~v~~s~~~~~l  149 (401)
T 4aez_A           87 APGIIDDYYLNLLDWS--NLNVVAVALERNVYVWNADSGSVSA------L---------AETDESTYVASVKWSHDGSFL  149 (401)
T ss_dssp             CTTCCCCTTCBCEEEC--TTSEEEEEETTEEEEEETTTCCEEE------E---------EECCTTCCEEEEEECTTSSEE
T ss_pred             CCCCcCCceEEEEeec--CCCEEEEECCCeEEEeeCCCCcEeE------e---------eecCCCCCEEEEEECCCCCEE
Confidence            3366555  4446666  4568889999999999998765321      0         011256889999999999999


Q ss_pred             EEEeCCCeEEEEcCC-CcceeecccccCCeEEEEEccCCCEEEEEecCCcEEEEeCC-CCceeEEeeeccCCeeeeeccC
Q psy12697        296 ATGSYDGYARIWTSD-GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAA-SGQCEQQFSFHSAPALDVDWQS  373 (602)
Q Consensus       296 ~~~~~dg~i~i~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~-~~~~~~~~~~~~~~~~~~~~~~  373 (602)
                      ++|+.||.|++||+. +.....+..|...|.+++|+  +++|++++.||.|++||++ .......+..|...+.++.|++
T Consensus       150 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~  227 (401)
T 4aez_A          150 SVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSWN--RHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRS  227 (401)
T ss_dssp             EEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECT
T ss_pred             EEECCCCeEEEEECcCCeEEEEecCCCCceEEEEEC--CCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcC
Confidence            999999999999976 66777888999999999994  5799999999999999999 5667788888999999999998


Q ss_pred             CC-eEEEeeCCCeEEEEEcCCCceeeEeccCCCCeEEEEECCCC-CEEEEEE--CCCeEEEEeCCCCeeeEeeccccccE
Q psy12697        374 NT-SFASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQG-LLLASCS--DDMTLKIWSLDKDNCVHDLQAHNKEI  449 (602)
Q Consensus       374 ~~-~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~i  449 (602)
                      ++ .+++++.|+.|++||+++++++..+..|...|.+++|+|++ .++++++  .|+.|++||+++++.+..+.      
T Consensus       228 ~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~------  301 (401)
T 4aez_A          228 DGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVD------  301 (401)
T ss_dssp             TSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEE------
T ss_pred             CCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEe------
Confidence            75 58899999999999999999999999999999999999976 4556654  69999999999888776653      


Q ss_pred             EEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEE--eCCCeEEEEeCCCCceee--eecccCCCe
Q psy12697        450 YTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSA--GVDKTTIIWDAASGQCEQ--QFSFHSAPA  525 (602)
Q Consensus       450 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~--~~dg~i~iwd~~~~~~~~--~~~~~~~~v  525 (602)
                                                   +...|.+++|+|++++++++  +.||.|++||+.+++...  .+.+|...|
T Consensus       302 -----------------------------~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v  352 (401)
T 4aez_A          302 -----------------------------AGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRV  352 (401)
T ss_dssp             -----------------------------CSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCC
T ss_pred             -----------------------------CCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCE
Confidence                                         23457778888899999984  489999999999866554  467899999


Q ss_pred             eEeeecCCc-eEEEeeCCCcEEEeecCCCCceeee
Q psy12697        526 LDVDWQSNT-SFASCSTDQHIHVCKLHSDKPVKSF  559 (602)
Q Consensus       526 ~~~~~s~~~-~l~~~~~d~~i~iw~~~~~~~~~~~  559 (602)
                      .+++|+|++ .|++++.||.|++|++.+++.+...
T Consensus       353 ~~~~~s~dg~~l~s~~~dg~i~iw~~~~~~~~~~~  387 (401)
T 4aez_A          353 LYSALSPDGRILSTAASDENLKFWRVYDGDHVKRP  387 (401)
T ss_dssp             CEEEECTTSSEEEEECTTSEEEEEECCC-------
T ss_pred             EEEEECCCCCEEEEEeCCCcEEEEECCCCcccccc
Confidence            999999999 9999999999999999888766543

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=1.3e-36  Score=302.79  Aligned_cols=280  Identities=19%  Similarity=0.224  Sum_probs=221.2

Q ss_pred             CCCceeEEeeCC-CCCeEEEEeCCCeEEEEcCCCc---ceeecccccCCeEEEEEcc-CCCEEEEEecCCcEEEEeCCCC
Q psy12697        279 SNKDVTSLDWNN-NGSFLATGSYDGYARIWTSDGS---LKSTLGQHKGPIFALKWNK-RGNYILSAGVDKTTIIWDAASG  353 (602)
Q Consensus       279 ~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~~~~~~---~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~~wd~~~~  353 (602)
                      +...|+|++|+| ++++||+|+.||.|++||+...   ....+.+|.+.|++++|+| ++++|++++.||+|++||++++
T Consensus       118 ~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~  197 (435)
T 4e54_B          118 FDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGN  197 (435)
T ss_dssp             CSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSC
T ss_pred             CCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCC
Confidence            467899999999 5679999999999999998632   3345568999999999998 6899999999999999999876


Q ss_pred             ceeEEeee--ccCCeeeeeccCCC-eEEEeeCCCeEEEEEcCCCceeeEeccCCCCeEEEEECCCCC-EEEEEECCCeEE
Q psy12697        354 QCEQQFSF--HSAPALDVDWQSNT-SFASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGL-LLASCSDDMTLK  429 (602)
Q Consensus       354 ~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~  429 (602)
                      ........  ....+.+++|++++ .+++|+.||.|++||++. +.+..+.+|...|.+++|+|++. +|++++.|+.|+
T Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~-~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~  276 (435)
T 4e54_B          198 ILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDG-KELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVK  276 (435)
T ss_dssp             EEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSS-CBCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCC
T ss_pred             ceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCc-ceeEEEecccceEEeeeecCCCceEEEEecCcceee
Confidence            54443333  33456788898875 588899999999999864 56778899999999999999876 788999999999


Q ss_pred             EEeCCCCeeeEeeccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCCCeEEEEeC
Q psy12697        430 IWSLDKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDA  509 (602)
Q Consensus       430 iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~  509 (602)
                      +||+++.+....+.                               ...+|...|++++|+|+|++|++++.||.|++||+
T Consensus       277 iwd~~~~~~~~~~~-------------------------------~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~  325 (435)
T 4e54_B          277 IWDLRQVRGKASFL-------------------------------YSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSA  325 (435)
T ss_dssp             EEETTTCCSSSCCS-------------------------------BCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEES
T ss_pred             EEecccccccceEE-------------------------------EeeeccccccceeECCCCCeeEEEcCCCEEEEEEC
Confidence            99998765433221                               12347888999999999999999999999999999


Q ss_pred             CCCceeeeecccCC------CeeEeeecCCc-eEEEee------------CCCcEEEeecCCCCceeeeecccccceEEE
Q psy12697        510 ASGQCEQQFSFHSA------PALDVDWQSNT-SFASCS------------TDQHIHVCKLHSDKPVKSFEGHTTGQLVHS  570 (602)
Q Consensus       510 ~~~~~~~~~~~~~~------~v~~~~~s~~~-~l~~~~------------~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~  570 (602)
                      .++++...+..|..      .+....|+|++ .+++++            .++.|++||..+++.+..+....       
T Consensus       326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~-------  398 (435)
T 4e54_B          326 SQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPE-------  398 (435)
T ss_dssp             SSSSSEEEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSS-------
T ss_pred             CCCccceEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCC-------
Confidence            99988877766543      23345666666 444443            34679999998888777654321       


Q ss_pred             EecCCcEEEE-EECCCCCeEEEeccCCeEEee
Q psy12697        571 YKGTGGIFEV-CWNSRGDKVGASASDGSVFKN  601 (602)
Q Consensus       571 ~~~~~~i~~l-~~spdg~~l~~~~~dg~v~i~  601 (602)
                         ...|.++ +|+|||++||+|+ |+.|+|+
T Consensus       399 ---~~~v~s~~~fspdg~~lasg~-d~~i~iW  426 (435)
T 4e54_B          399 ---SSGISSLNEFNPMGDTLASAM-GYHILIW  426 (435)
T ss_dssp             ---CCCCCCEEEECTTSSCEEEEC-SSEEEEC
T ss_pred             ---CCcEEEEEEECCCCCEEEEEc-CCcEEEE
Confidence               2557776 6999999999876 7788875

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=2.9e-36  Score=293.00  Aligned_cols=288  Identities=13%  Similarity=0.190  Sum_probs=233.0

Q ss_pred             CCCceeEEeeCCCCCeE-EEEeC---CCeEEEEcCCCcce--eecccccCCeEEEEEccC---CCEEEEEecCCcEEEEe
Q psy12697        279 SNKDVTSLDWNNNGSFL-ATGSY---DGYARIWTSDGSLK--STLGQHKGPIFALKWNKR---GNYILSAGVDKTTIIWD  349 (602)
Q Consensus       279 ~~~~i~~~~~~~~~~~l-~~~~~---dg~i~i~~~~~~~~--~~~~~~~~~i~~~~~~~~---~~~l~~~~~dg~i~~wd  349 (602)
                      |...|.+++|+|++..+ ++|+.   ||.|++|++.....  .....|...|.+++|+|+   +++|++++.||.|++||
T Consensus        17 h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd   96 (357)
T 3i2n_A           17 FNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWN   96 (357)
T ss_dssp             CSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTSCEEEEC
T ss_pred             CCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCCeEEEEe
Confidence            67899999999998655 45655   89999999875433  223378999999999998   69999999999999999


Q ss_pred             CCCCc-eeEEeeeccCCeeeeec------cCC-CeEEEeeCCCeEEEEEcCCCc-eeeEeccCCC----CeEEEE----E
Q psy12697        350 AASGQ-CEQQFSFHSAPALDVDW------QSN-TSFASCSTDQHIHVCKLHSDK-PVKSFEGHTN----EVNAIK----W  412 (602)
Q Consensus       350 ~~~~~-~~~~~~~~~~~~~~~~~------~~~-~~~~~~~~~~~i~i~d~~~~~-~~~~~~~~~~----~i~~~~----~  412 (602)
                      +.+++ ....+..|...+.++.|      +++ ..+++++.|+.|++||+.+++ ++..+..|.+    .+.+++    |
T Consensus        97 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  176 (357)
T 3i2n_A           97 LEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAY  176 (357)
T ss_dssp             TTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCC
T ss_pred             CCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEecc
Confidence            99988 88889999999999954      555 468999999999999999887 7777776655    789998    7


Q ss_pred             CCCCCEEEEEECCCeEEEEeCCCCeeeEeeccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEcc--
Q psy12697        413 DPQGLLLASCSDDMTLKIWSLDKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNK--  490 (602)
Q Consensus       413 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~--  490 (602)
                      +|++++|++++.||.|++||+++++.... ..                                  |...|.+++|+|  
T Consensus       177 ~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~----------------------------------~~~~v~~~~~~~~~  221 (357)
T 3i2n_A          177 NQEERVVCAGYDNGDIKLFDLRNMALRWE-TN----------------------------------IKNGVCSLEFDRKD  221 (357)
T ss_dssp             C-CCCEEEEEETTSEEEEEETTTTEEEEE-EE----------------------------------CSSCEEEEEESCSS
T ss_pred             CCCCCEEEEEccCCeEEEEECccCceeee-cC----------------------------------CCCceEEEEcCCCC
Confidence            88999999999999999999998775432 22                                  456677788888  


Q ss_pred             -CCCEEEEEeCCCeEEEEeCCCCceeeeec-----ccCCCeeEeeecCCc--eEEEeeCCCcEEEeecCCCCceeeeecc
Q psy12697        491 -RGNYILSAGVDKTTIIWDAASGQCEQQFS-----FHSAPALDVDWQSNT--SFASCSTDQHIHVCKLHSDKPVKSFEGH  562 (602)
Q Consensus       491 -~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-----~~~~~v~~~~~s~~~--~l~~~~~d~~i~iw~~~~~~~~~~~~~~  562 (602)
                       ++++|++++.||.|++||+.+++....+.     +|...|.+++|+|++  ++++++.||.|++||+.++.........
T Consensus       222 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~  301 (357)
T 3i2n_A          222 ISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSE  301 (357)
T ss_dssp             SSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTT
T ss_pred             CCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCC
Confidence             88999999999999999999887766555     899999999999998  6899999999999999876543222110


Q ss_pred             c-------ccceEEEEec-CCcEEEEEECCCCCeEE-EeccCCeEEee
Q psy12697        563 T-------TGQLVHSYKG-TGGIFEVCWNSRGDKVG-ASASDGSVFKN  601 (602)
Q Consensus       563 ~-------~~~~~~~~~~-~~~i~~l~~spdg~~l~-~~~~dg~v~i~  601 (602)
                      .       ....+..+.. .+.|.+++|+|+|++|+ +++.||.|+|.
T Consensus       302 g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw  349 (357)
T 3i2n_A          302 GIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQTVRVL  349 (357)
T ss_dssp             SCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEETTSEEEEE
T ss_pred             CCccccccccceeeccccCCCCeeEEEEcCCCCeEEEEecCCCcEEEE
Confidence            0       1123334433 57899999999999998 79999999874

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=100.00  E-value=5.5e-36  Score=292.29  Aligned_cols=312  Identities=15%  Similarity=0.217  Sum_probs=244.7

Q ss_pred             ceeeeecccceeeeeeeccCCceEEEEECCC---CCeEEEeeCCceEEEEecCC-ceeEEEeeccCceEEEEeCCCCCCC
Q psy12697        121 TLPLWDVERGECLNTLTRHTEPVYSVAFSPD---GKFLASGSFDKCVHIWSART-GQLVHSYKGTGGIFEVCWNSRGTPP  196 (602)
Q Consensus       121 ~i~vwd~~~~~~~~~l~~h~~~V~~~~~s~d---~~~l~s~~~d~~v~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  196 (602)
                      ....|+....+.+..+.+|.+.|++++|+|+   |++|++|+.||.|+|||+.+ +..+.                    
T Consensus        20 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~--------------------   79 (368)
T 3mmy_A           20 SATTDNHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIP--------------------   79 (368)
T ss_dssp             ---CCSSCTTCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEE--------------------
T ss_pred             EeccCCCCCcceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeE--------------------
Confidence            3345666777888899999999999999999   69999999999999999987 44331                    


Q ss_pred             CCCCCccccccccccCCcceEeeCCCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcc
Q psy12697        197 NPPESMEVDASIEIPQSKATKLIGHESEVFICAWNPVKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTE  276 (602)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (602)
                                         ..+.+|...|.+++|+|++++|++++.||.|++||+.++..                    
T Consensus        80 -------------------~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~--------------------  120 (368)
T 3mmy_A           80 -------------------KAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQA--------------------  120 (368)
T ss_dssp             -------------------EEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE--------------------
T ss_pred             -------------------EEeccccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCCCCc--------------------
Confidence                               34557889999999999999999999999999998865321                    


Q ss_pred             cCCCCceeEEeeCCCCCeEEEEeCCCeEEEEcCCCcceeecccccCCeEEEEE--ccCCCEEEEEecCCcEEEEeCCCCc
Q psy12697        277 VPSNKDVTSLDWNNNGSFLATGSYDGYARIWTSDGSLKSTLGQHKGPIFALKW--NKRGNYILSAGVDKTTIIWDAASGQ  354 (602)
Q Consensus       277 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~i~~~~~--~~~~~~l~~~~~dg~i~~wd~~~~~  354 (602)
                                                            .....|...|.+++|  +|++++|++++.||.|++||+++++
T Consensus       121 --------------------------------------~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~  162 (368)
T 3mmy_A          121 --------------------------------------IQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSN  162 (368)
T ss_dssp             --------------------------------------EEEEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSS
T ss_pred             --------------------------------------eeeccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCc
Confidence                                                  011247788999999  8899999999999999999999998


Q ss_pred             eeEEeeeccCCeeeeeccCCCeEEEeeCCCeEEEEEcCCCceeeEe--ccCCCCeEEEEECCCCCE----EEEEECCCeE
Q psy12697        355 CEQQFSFHSAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSF--EGHTNEVNAIKWDPQGLL----LASCSDDMTL  428 (602)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~--~~~~~~i~~~~~~~~~~~----l~~~~~dg~i  428 (602)
                      .+..+..+. .+.++.+.++ .+++++.++.+.+|++.........  ..+...+.++++.++...    +++++.||.|
T Consensus       163 ~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i  240 (368)
T 3mmy_A          163 PMMVLQLPE-RCYCADVIYP-MAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRV  240 (368)
T ss_dssp             CSEEEECSS-CEEEEEEETT-EEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEE
T ss_pred             EEEEEecCC-CceEEEecCC-eeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcE
Confidence            888887654 5556665544 6788888999999999876543322  223445666666665544    9999999999


Q ss_pred             EEEeCCCC---eeeEeeccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCCCeEE
Q psy12697        429 KIWSLDKD---NCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTI  505 (602)
Q Consensus       429 ~iwd~~~~---~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~  505 (602)
                      ++||++..   ..+..+..|......                      .....|..+|.+++|+|++++|++++.||.|+
T Consensus       241 ~i~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~  298 (368)
T 3mmy_A          241 AIHYINPPNPAKDNFTFKCHRSNGTN----------------------TSAPQDIYAVNGIAFHPVHGTLATVGSDGRFS  298 (368)
T ss_dssp             EEEESSCSCHHHHSEEEECSEEC--------------------------CCCEEECCEEEEEECTTTCCEEEEETTSCEE
T ss_pred             EEEecCCCCccccceeeeeeeccccc----------------------ccccccccceEEEEEecCCCEEEEEccCCeEE
Confidence            99999876   445555554332110                      11234566899999999999999999999999


Q ss_pred             EEeCCCCceeeeecccCCCeeEeeecCCc-eEEEeeCCCcEEEeecCCC
Q psy12697        506 IWDAASGQCEQQFSFHSAPALDVDWQSNT-SFASCSTDQHIHVCKLHSD  553 (602)
Q Consensus       506 iwd~~~~~~~~~~~~~~~~v~~~~~s~~~-~l~~~~~d~~i~iw~~~~~  553 (602)
                      +||+.+++++..+..|..+|.+++|+|++ +|++++.|+..+.|++.+.
T Consensus       299 iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~s~d~~~~~~~~~~~  347 (368)
T 3mmy_A          299 FWDKDARTKLKTSEQLDQPISACCFNHNGNIFAYASSYDWSKGHEFYNP  347 (368)
T ss_dssp             EEETTTTEEEEECCCCSSCEEEEEECTTSSCEEEEECCCSTTCGGGCCT
T ss_pred             EEECCCCcEEEEecCCCCCceEEEECCCCCeEEEEecccccccccccCC
Confidence            99999999999999999999999999999 9999999987776665443

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=1.6e-37  Score=304.15  Aligned_cols=281  Identities=14%  Similarity=0.183  Sum_probs=223.0

Q ss_pred             eeCCCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCCC--CCCCccceEEEEEEecCCCcccCCCCceeEEeeCCCCCeE
Q psy12697        218 LIGHESEVFICAWNPVKDFLASGSGDSTARIWDMTDST--KKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFL  295 (602)
Q Consensus       218 l~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l  295 (602)
                      ...+..+|.+++|+|++++|++++.|+.|++||+.++.  ...                ....|...|.+++|+|++++|
T Consensus         7 ~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~----------------~~~~h~~~v~~~~~s~~~~~l   70 (377)
T 3dwl_C            7 LHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHAR----------------TFSDHDKIVTCVDWAPKSNRI   70 (377)
T ss_dssp             EEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECC----------------CBCCCSSCEEEEEECTTTCCE
T ss_pred             EecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEE----------------EEecCCceEEEEEEeCCCCEE
Confidence            34467899999999999999999999999999998652  111                123467899999999999999


Q ss_pred             EEEeCCCeEEEEcCCCc----ceeecccccCCeEEEEEccCCCEEEEEecCCcEEEEeCCCCc---eeEEeee-ccCCee
Q psy12697        296 ATGSYDGYARIWTSDGS----LKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQ---CEQQFSF-HSAPAL  367 (602)
Q Consensus       296 ~~~~~dg~i~i~~~~~~----~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~---~~~~~~~-~~~~~~  367 (602)
                      ++++.||.|++||+...    ....+..|...|.+++|+|++++|++++.|+.|++||+++++   ....+.. |...+.
T Consensus        71 ~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~  150 (377)
T 3dwl_C           71 VTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTIL  150 (377)
T ss_dssp             EEEETTSSEEEC------CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEE
T ss_pred             EEEeCCCeEEEEEcCCCCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeE
Confidence            99999999999998754    366778899999999999999999999999999999999887   4667776 899999


Q ss_pred             eeeccCCC-eEEEeeCCCeEEEEEcC------------------CCceeeEeccCCCCeEEEEECCCCCEEEEEECCCeE
Q psy12697        368 DVDWQSNT-SFASCSTDQHIHVCKLH------------------SDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTL  428 (602)
Q Consensus       368 ~~~~~~~~-~~~~~~~~~~i~i~d~~------------------~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i  428 (602)
                      +++|+|++ .+++++.|+.|++||+.                  .++++..+ +|...|.+++|+|++++|++++.||.|
T Consensus       151 ~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i  229 (377)
T 3dwl_C          151 SLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSSV  229 (377)
T ss_dssp             EEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTTEE
T ss_pred             EEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCCcE
Confidence            99999985 58899999999999985                  24455666 899999999999999999999999999


Q ss_pred             EEEeCCCCee----eEeeccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCCCeE
Q psy12697        429 KIWSLDKDNC----VHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTT  504 (602)
Q Consensus       429 ~iwd~~~~~~----~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i  504 (602)
                      ++||+.+++.    +..+                                  ..|..+|.+++|+|++++|++++.++.+
T Consensus       230 ~iwd~~~~~~~~~~~~~~----------------------------------~~~~~~v~~~~~s~~~~~l~~~~~~~~~  275 (377)
T 3dwl_C          230 TIAYPSAPEQPPRALITV----------------------------------KLSQLPLRSLLWANESAIVAAGYNYSPI  275 (377)
T ss_dssp             C-CEECSTTSCEEECCCE----------------------------------ECSSSCEEEEEEEETTEEEEEESSSSEE
T ss_pred             EEEECCCCCCcceeeEee----------------------------------cCCCCceEEEEEcCCCCEEEEEcCCcEE
Confidence            9999998765    3333                                  3466778888888899999998877766


Q ss_pred             EEEeCCCCc--ee----------------------------------e----------------eecccCCCeeEeeecC
Q psy12697        505 IIWDAASGQ--CE----------------------------------Q----------------QFSFHSAPALDVDWQS  532 (602)
Q Consensus       505 ~iwd~~~~~--~~----------------------------------~----------------~~~~~~~~v~~~~~s~  532 (602)
                       +|+.....  ..                                  .                ....|.+.|+++++.+
T Consensus       276 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~  354 (377)
T 3dwl_C          276 -LLQGNESGWAHTRDLDAGTSKTSFTHTGNTGEGREEEGPVSFTALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYA  354 (377)
T ss_dssp             -EECCCC---CCSBCCCSCCCCCCBSSSSSBCCCCCC-------------------------CCCSSSCSSCEEEEEEEE
T ss_pred             -EEEeCCCceEEEeeecccccccccccccccccccccccccccccccccccchhhccccccccccCccccceeEEEeccC
Confidence             66554211  00                                  0                0112889999999866


Q ss_pred             Cc-----eEEEeeCCCcEEEeec
Q psy12697        533 NT-----SFASCSTDQHIHVCKL  550 (602)
Q Consensus       533 ~~-----~l~~~~~d~~i~iw~~  550 (602)
                      +.     .|++++.||.|++||+
T Consensus       355 ~~~~~~~~~~s~g~Dg~i~iWdl  377 (377)
T 3dwl_C          355 GTPGNITAFTSSGTDGRVVLWTL  377 (377)
T ss_dssp             EETTEEEEEEEEETTSEEEEECC
T ss_pred             CCCCceEEEEeecCCCcEEEecC
Confidence            54     5999999999999985

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=100.00  E-value=9.4e-36  Score=296.94  Aligned_cols=277  Identities=23%  Similarity=0.459  Sum_probs=227.8

Q ss_pred             eeccCCceEEEEECCCCCeEEEeeCCceEEEEecCCceeEEEeeccCceEEEEeCCCCCCCCCCCCccccccccccCCcc
Q psy12697        136 LTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKGTGGIFEVCWNSRGTPPNPPESMEVDASIEIPQSKA  215 (602)
Q Consensus       136 l~~h~~~V~~~~~s~d~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  215 (602)
                      ..+|...|.|++|  ++++|++|+.||.|++||+.+++.+.                                       
T Consensus       129 ~~~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~~---------------------------------------  167 (435)
T 1p22_A          129 RSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKR---------------------------------------  167 (435)
T ss_dssp             CCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEE---------------------------------------
T ss_pred             ccCCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEEE---------------------------------------
Confidence            3467788998887  79999999999999999999988764                                       


Q ss_pred             eEeeCCCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEeeCCCCCeE
Q psy12697        216 TKLIGHESEVFICAWNPVKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFL  295 (602)
Q Consensus       216 ~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l  295 (602)
                       .+.+|...|.+++|  ++++|++|+.||.|++||+.+++.                                       
T Consensus       168 -~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~---------------------------------------  205 (435)
T 1p22_A          168 -ILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEM---------------------------------------  205 (435)
T ss_dssp             -EECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCE---------------------------------------
T ss_pred             -EEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCcE---------------------------------------
Confidence             34578899999988  678999999999999999865421                                       


Q ss_pred             EEEeCCCeEEEEcCCCcceeecccccCCeEEEEEccCCCEEEEEecCCcEEEEeCCCCcee---EEeeeccCCeeeeecc
Q psy12697        296 ATGSYDGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCE---QQFSFHSAPALDVDWQ  372 (602)
Q Consensus       296 ~~~~~dg~i~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~---~~~~~~~~~~~~~~~~  372 (602)
                                        ...+..|...|.+++|++  +.+++++.||.|++||+.++...   ..+..|...+.++.+ 
T Consensus       206 ------------------~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~-  264 (435)
T 1p22_A          206 ------------------LNTLIHHCEAVLHLRFNN--GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF-  264 (435)
T ss_dssp             ------------------EEEECCCCSCEEEEECCT--TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE-
T ss_pred             ------------------EEEEcCCCCcEEEEEEcC--CEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe-
Confidence                              122335667788888763  47888888888888888877655   556778889999998 


Q ss_pred             CCCeEEEeeCCCeEEEEEcCCCceeeEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeeeEeeccccccEEEE
Q psy12697        373 SNTSFASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHDLQAHNKEIYTI  452 (602)
Q Consensus       373 ~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~  452 (602)
                      .+..+++++.||.|++||+++++.+..+.+|...|.+++++  ++++++|+.||.|++||+++++++..+..|...+.  
T Consensus       265 ~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~--  340 (435)
T 1p22_A          265 DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVR--  340 (435)
T ss_dssp             ETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEE--
T ss_pred             CCCEEEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEeC--CCEEEEEeCCCeEEEEECCCCCEEEEEeCCcCcEE--
Confidence            66789999999999999999999999999999999999994  67999999999999999999988887776555544  


Q ss_pred             EECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCc---------eeeeecccCC
Q psy12697        453 KWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQ---------CEQQFSFHSA  523 (602)
Q Consensus       453 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~~~~~---------~~~~~~~~~~  523 (602)
                                                      +++|  ++++|++|+.||.|++||+.++.         ++..+.+|.+
T Consensus       341 --------------------------------~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~  386 (435)
T 1p22_A          341 --------------------------------CIRF--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSG  386 (435)
T ss_dssp             --------------------------------EEEC--CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSS
T ss_pred             --------------------------------EEEe--cCCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCC
Confidence                                            4444  56789999999999999998776         7888999999


Q ss_pred             CeeEeeecCCc-eEEEeeCCCcEEEeecCCCCce
Q psy12697        524 PALDVDWQSNT-SFASCSTDQHIHVCKLHSDKPV  556 (602)
Q Consensus       524 ~v~~~~~s~~~-~l~~~~~d~~i~iw~~~~~~~~  556 (602)
                      .|.+++|  ++ .|++++.||.|++||+.+....
T Consensus       387 ~v~~l~~--~~~~l~s~s~Dg~i~iwd~~~~~~~  418 (435)
T 1p22_A          387 RVFRLQF--DEFQIVSSSHDDTILIWDFLNDPAA  418 (435)
T ss_dssp             CCCCEEE--CSSCEEECCSSSEEEEEC-------
T ss_pred             CeEEEEe--CCCEEEEEeCCCEEEEEECCCCCCc
Confidence            9999999  56 9999999999999999776543

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=100.00  E-value=3.5e-36  Score=301.96  Aligned_cols=339  Identities=13%  Similarity=0.197  Sum_probs=238.4

Q ss_pred             ccCCceEEEEECCCCCeEEEeeCCceEEEEecCCceeEEEeeccCceEEEEeCCCCCCCCCCCCccccccccccCCcceE
Q psy12697        138 RHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKGTGGIFEVCWNSRGTPPNPPESMEVDASIEIPQSKATK  217 (602)
Q Consensus       138 ~h~~~V~~~~~s~d~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  217 (602)
                      .|.+.|++++|+|+|++||+|+.||.|+|||+.+++........                             .......
T Consensus        26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~-----------------------------~~~~~~~   76 (447)
T 3dw8_B           26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRG-----------------------------EYNVYST   76 (447)
T ss_dssp             CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCC-----------------------------CEEEEEE
T ss_pred             cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCccccc-----------------------------ceeEecc
Confidence            36899999999999999999999999999999887632100000                             0001145


Q ss_pred             eeCCC------------cceEEEEEcCCC--CEEEEeeCCCcEEEEeCCCCCCC-------------------CCccceE
Q psy12697        218 LIGHE------------SEVFICAWNPVK--DFLASGSGDSTARIWDMTDSTKK-------------------DPKELQI  264 (602)
Q Consensus       218 l~~h~------------~~v~~~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~-------------------~~~~~~~  264 (602)
                      +.+|.            ..|.+++|+|++  ..|++++.|++|++|++.++...                   .......
T Consensus        77 ~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  156 (447)
T 3dw8_B           77 FQSHEPEFDYLKSLEIEEKINKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPV  156 (447)
T ss_dssp             EECCCCEEEGGGTEEECCCCCEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCE
T ss_pred             cccccccccccccccccCceEEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEecc
Confidence            56787            889999999998  79999999999999998753221                   0000000


Q ss_pred             EEEE-----EecCCCcccCCCCceeEEeeCCCCCeEEEEeCCCeEEEEcCC-Cc-cee-------ecccccCCeEEEEEc
Q psy12697        265 VLRH-----CISKGGTEVPSNKDVTSLDWNNNGSFLATGSYDGYARIWTSD-GS-LKS-------TLGQHKGPIFALKWN  330 (602)
Q Consensus       265 ~~~~-----~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~-~~-~~~-------~~~~~~~~i~~~~~~  330 (602)
                      ....     ..........|...|.+++|+|++++|++| .||.|++||+. +. ...       .+..|...|.+++|+
T Consensus       157 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  235 (447)
T 3dw8_B          157 FRPMDLMVEASPRRIFANAHTYHINSISINSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFH  235 (447)
T ss_dssp             EEEEEEEEEEEEEEEECSCCSSCCCEEEECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEEC
T ss_pred             ccchheeeeccceEEeccCCCcceEEEEEcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEEC
Confidence            0000     000001123578899999999999999998 79999999988 32 222       366899999999999


Q ss_pred             cCC-CEEEEEecCCcEEEEeCCCCce----eEEeeeccC------------CeeeeeccCCCe-EEEeeCCCeEEEEEcC
Q psy12697        331 KRG-NYILSAGVDKTTIIWDAASGQC----EQQFSFHSA------------PALDVDWQSNTS-FASCSTDQHIHVCKLH  392 (602)
Q Consensus       331 ~~~-~~l~~~~~dg~i~~wd~~~~~~----~~~~~~~~~------------~~~~~~~~~~~~-~~~~~~~~~i~i~d~~  392 (602)
                      |++ ++|++++.||.|++||+++++.    ...+..+..            .+.+++|+|++. +++++. +.|++||++
T Consensus       236 p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~  314 (447)
T 3dw8_B          236 PNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLN  314 (447)
T ss_dssp             SSCTTEEEEEETTSCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETT
T ss_pred             CCCCcEEEEEeCCCeEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCC
Confidence            998 9999999999999999999887    677777765            899999999876 555556 999999999


Q ss_pred             C-CceeeEeccCCCC---------------eEEEEECCCCCEEEEEECCCeEEEEeCCCCeeeEeeccccccEEEEEECC
Q psy12697        393 S-DKPVKSFEGHTNE---------------VNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHDLQAHNKEIYTIKWSP  456 (602)
Q Consensus       393 ~-~~~~~~~~~~~~~---------------i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~  456 (602)
                      + ++++..+.+|...               +..++|+|++++|++|+.||.|++||+.+++.+ .+..+..........+
T Consensus       315 ~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~-~~~~~~~~~~~~~~~~  393 (447)
T 3dw8_B          315 MENRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDI-TLEASRENNKPRTVLK  393 (447)
T ss_dssp             CCSSCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEE-EEECCSTTCCTTCBCC
T ss_pred             CCccccceeeccccccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcce-eeeecccccccccccC
Confidence            7 8888888888642               234999999999999999999999999988765 3333332211000000


Q ss_pred             CCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCCCeEEEEeCC
Q psy12697        457 TGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAA  510 (602)
Q Consensus       457 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~~  510 (602)
                      ....... ..............+...|..++|+|++++||+++.++ +++|..+
T Consensus       394 ~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~~~-~~~~~~~  445 (447)
T 3dw8_B          394 PRKVCAS-GKRKKDEISVDSLDFNKKILHTAWHPKENIIAVATTNN-LYIFQDK  445 (447)
T ss_dssp             CCCEECS-SCCCTTCEEGGGCCTTSCCCEEEECSSSSEEEEECSSC-EEEEECC
T ss_pred             Ccccccc-CCcccccccccccccCCceeEEEECCCCCEEEEEecce-eeeeccc
Confidence            0000000 00000001111224567899999999999999998877 8888643

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=100.00  E-value=6.4e-36  Score=289.59  Aligned_cols=308  Identities=16%  Similarity=0.245  Sum_probs=228.0

Q ss_pred             eeeeccCCceEEEEECCCCCeEEEeeCCceEEEEecCCceeEEEeeccCceEEEEeCCCCCCCCCCCCccccccccccCC
Q psy12697        134 NTLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKGTGGIFEVCWNSRGTPPNPPESMEVDASIEIPQS  213 (602)
Q Consensus       134 ~~l~~h~~~V~~~~~s~d~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  213 (602)
                      ..+.+|.+.|++++|+|++++||+++.||.|++||+.++......                                   
T Consensus         5 ~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~-----------------------------------   49 (351)
T 3f3f_A            5 PFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWEL-----------------------------------   49 (351)
T ss_dssp             CEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEE-----------------------------------
T ss_pred             ccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCccee-----------------------------------
Confidence            456899999999999999999999999999999999876422111                                   


Q ss_pred             cceEeeCCCcceEEEEEcC--CCCEEEEeeCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEeeCCC
Q psy12697        214 KATKLIGHESEVFICAWNP--VKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNN  291 (602)
Q Consensus       214 ~~~~l~~h~~~v~~~~~~~--~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  291 (602)
                       ...+.+|...|.+++|+|  ++++|++++.||.|++||+.++.......                              
T Consensus        50 -~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~------------------------------   98 (351)
T 3f3f_A           50 -SDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGR------------------------------   98 (351)
T ss_dssp             -EEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSC------------------------------
T ss_pred             -cceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCccccccc------------------------------
Confidence             145678999999999999  68999999999999999998764321000                              


Q ss_pred             CCeEEEEeCCCeEEEEcCCCcceeecccccCCeEEEEEccC--CCEEEEEecCCcEEEEeCCCCceeEEee---------
Q psy12697        292 GSFLATGSYDGYARIWTSDGSLKSTLGQHKGPIFALKWNKR--GNYILSAGVDKTTIIWDAASGQCEQQFS---------  360 (602)
Q Consensus       292 ~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~dg~i~~wd~~~~~~~~~~~---------  360 (602)
                                        .......+..|...|.+++|+|+  +++|++++.||.|++||+++++.+..+.         
T Consensus        99 ------------------~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~  160 (351)
T 3f3f_A           99 ------------------RWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLS  160 (351)
T ss_dssp             ------------------SEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCS
T ss_pred             ------------------CcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccc
Confidence                              00123344568889999999999  9999999999999999999887654433         


Q ss_pred             ----eccCCeeeeeccC----CCeEEEeeCCCeEEEEEcCCCce--eeEeccCCCCeEEEEECCCC----CEEEEEECCC
Q psy12697        361 ----FHSAPALDVDWQS----NTSFASCSTDQHIHVCKLHSDKP--VKSFEGHTNEVNAIKWDPQG----LLLASCSDDM  426 (602)
Q Consensus       361 ----~~~~~~~~~~~~~----~~~~~~~~~~~~i~i~d~~~~~~--~~~~~~~~~~i~~~~~~~~~----~~l~~~~~dg  426 (602)
                          .+...+.++.|+|    +..+++++.++.+.+|+...++.  +..+.+|...|++++|+|++    ++|++++.||
T Consensus       161 ~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg  240 (351)
T 3f3f_A          161 IPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDG  240 (351)
T ss_dssp             CCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTS
T ss_pred             cccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCC
Confidence                3566788999988    46799999999998888887765  77888999999999999998    8999999999


Q ss_pred             eEEEEeCCCCeeeEeeccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEE----EEEeCCC
Q psy12697        427 TLKIWSLDKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYI----LSAGVDK  502 (602)
Q Consensus       427 ~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l----~s~~~dg  502 (602)
                      .|++||++.+.................                                  .++....+    ..+....
T Consensus       241 ~i~iwd~~~~~~~~~~~~~~~~~~~~~----------------------------------~~~~~~~~~~~~~~~~~~~  286 (351)
T 3f3f_A          241 RIRIFKITEKLSPLASEESLTNSNMFD----------------------------------NSADVDMDAQGRSDSNTEE  286 (351)
T ss_dssp             CEEEEEEEECC---------------------------------------------------------------------
T ss_pred             eEEEEeCCCCcCccccCCcccceeccC----------------------------------CCcccccccccccccccce
Confidence            999999987644333222221111111                                  11122222    3334456


Q ss_pred             eEEEEeCCCCceeeeecccCCCeeEeeecCCc-eEEEeeCCCcEEEeecCCCCceeee
Q psy12697        503 TTIIWDAASGQCEQQFSFHSAPALDVDWQSNT-SFASCSTDQHIHVCKLHSDKPVKSF  559 (602)
Q Consensus       503 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~-~l~~~~~d~~i~iw~~~~~~~~~~~  559 (602)
                      .+.+|+....+.+..+.+|...|++++|+|++ +|++++.||.|++|++.+++.+..+
T Consensus       287 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~  344 (351)
T 3f3f_A          287 KAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWKATYSNEFKCM  344 (351)
T ss_dssp             ----CCSEEEEEEEEECTTSSCEEEEEECSSSCCEEEEETTSCEEEEEECTTSCEEEE
T ss_pred             eeeecccccccEEEEEecccccEEEEEEcCCCCEEEEecCCCcEEEEecCcCcchhhe
Confidence            67888888888999999999999999999999 9999999999999999887655444

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=8.3e-36  Score=280.77  Aligned_cols=257  Identities=21%  Similarity=0.353  Sum_probs=208.0

Q ss_pred             eecccccCCeEEEEEccCCCEEEEEecCCcEEEEeCCC--CceeEEeeeccCCeeeeeccC---CCeEEEeeCCCeEEEE
Q psy12697        315 STLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAAS--GQCEQQFSFHSAPALDVDWQS---NTSFASCSTDQHIHVC  389 (602)
Q Consensus       315 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~--~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~i~i~  389 (602)
                      ..+.+|...|.+++|+|+|++|++++.|++|++||+..  .+.+..+..|..+|.+++|++   +..+++++.|+.|++|
T Consensus         3 ~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iW   82 (297)
T 2pm7_B            3 VIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIW   82 (297)
T ss_dssp             EECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEE
T ss_pred             eeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEE
Confidence            35678999999999999999999999999999999974  367788899999999999975   4679999999999999


Q ss_pred             EcCCCc--eeeEeccCCCCeEEEEECCC--CCEEEEEECCCeEEEEeCCCCee--eEeeccccccEEEEEECCCCCCCCC
Q psy12697        390 KLHSDK--PVKSFEGHTNEVNAIKWDPQ--GLLLASCSDDMTLKIWSLDKDNC--VHDLQAHNKEIYTIKWSPTGPETSN  463 (602)
Q Consensus       390 d~~~~~--~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~--~~~~~~~~~~i~~~~~~~~~~~~~~  463 (602)
                      |+.+++  .+..+.+|...|.+++|+|+  +.+|++++.|+.|++||++++..  ...+..|...+.+++|+|+......
T Consensus        83 d~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~  162 (297)
T 2pm7_B           83 KEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDG  162 (297)
T ss_dssp             EBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC-----
T ss_pred             EcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcccccc
Confidence            998874  56678889999999999997  89999999999999999987532  3456677777777777775421000


Q ss_pred             CCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCc----eeeeecccCCCeeEeeecCC---c-e
Q psy12697        464 PNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQ----CEQQFSFHSAPALDVDWQSN---T-S  535 (602)
Q Consensus       464 ~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~~~~~----~~~~~~~~~~~v~~~~~s~~---~-~  535 (602)
                                           .-...+++++|++|+.|+.|++||+.+++    +...+.+|...|.+++|+|+   + +
T Consensus       163 ---------------------~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~  221 (297)
T 2pm7_B          163 ---------------------EHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSY  221 (297)
T ss_dssp             ----------------------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEE
T ss_pred             ---------------------cCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceE
Confidence                                 00012346899999999999999998776    56788899999999999998   4 8


Q ss_pred             EEEeeCCCcEEEeecCCCCce---eeeecccccceEEEEecCCcEEEEEECCCCCeEEEeccCCeEEee
Q psy12697        536 FASCSTDQHIHVCKLHSDKPV---KSFEGHTTGQLVHSYKGTGGIFEVCWNSRGDKVGASASDGSVFKN  601 (602)
Q Consensus       536 l~~~~~d~~i~iw~~~~~~~~---~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~v~i~  601 (602)
                      |++++.|++|++||+++....   ..+...         .....|.+++|+|+|++||+++.||.|+|.
T Consensus       222 las~s~D~~v~iWd~~~~~~~~~~~~~~~~---------~~~~~v~~~~~s~~g~~las~~~D~~v~lw  281 (297)
T 2pm7_B          222 MASVSQDRTCIIWTQDNEQGPWKKTLLKEE---------KFPDVLWRASWSLSGNVLALSGGDNKVTLW  281 (297)
T ss_dssp             EEEEETTSCEEEEEESSTTSCCEEEESSSS---------CCSSCEEEEEECSSSCCEEEEETTSCEEEE
T ss_pred             EEEEECCCcEEEEEeCCCCCccceeeeecc---------cCCCcEEEEEECCCCCEEEEEcCCCcEEEE
Confidence            999999999999998764311   111000         124679999999999999999999999875

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=1e-36  Score=289.65  Aligned_cols=248  Identities=26%  Similarity=0.395  Sum_probs=204.0

Q ss_pred             eeeccCCceEEEEECCCCCeEEEeeCCceEEEEecCCceeEEEeeccCceEEEEeCCCCCCCCCCCCccccccccccCCc
Q psy12697        135 TLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKGTGGIFEVCWNSRGTPPNPPESMEVDASIEIPQSK  214 (602)
Q Consensus       135 ~l~~h~~~V~~~~~s~d~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  214 (602)
                      .+.+|.+.|++++|+|+|++||+|+.|++|+|||+.+++....                                     
T Consensus         8 ~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~-------------------------------------   50 (316)
T 3bg1_A            8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILI-------------------------------------   50 (316)
T ss_dssp             ------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEE-------------------------------------
T ss_pred             ecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEE-------------------------------------
Confidence            4578999999999999999999999999999999987753211                                     


Q ss_pred             ceEeeCCCcceEEEEEcC--CCCEEEEeeCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEeeCCC-
Q psy12697        215 ATKLIGHESEVFICAWNP--VKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNN-  291 (602)
Q Consensus       215 ~~~l~~h~~~v~~~~~~~--~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-  291 (602)
                       ..+.+|...|.+++|+|  ++++|++++.|++|++||+.++....      ..        ....|...|.+++|+|+ 
T Consensus        51 -~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~------~~--------~~~~h~~~V~~v~~~p~~  115 (316)
T 3bg1_A           51 -ADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEK------SH--------EHAGHDSSVNSVCWAPHD  115 (316)
T ss_dssp             -EEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCCCE------EE--------EECCCSSCCCEEEECCTT
T ss_pred             -EEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcceE------EE--------EccCCCCceEEEEECCCC
Confidence             45678999999999986  48999999999999999998653211      00        11235688999999997 


Q ss_pred             -CCeEEEEeCCCeEEEEcCCCcc----eeecccccCCeEEEEEccC-----------------CCEEEEEecCCcEEEEe
Q psy12697        292 -GSFLATGSYDGYARIWTSDGSL----KSTLGQHKGPIFALKWNKR-----------------GNYILSAGVDKTTIIWD  349 (602)
Q Consensus       292 -~~~l~~~~~dg~i~i~~~~~~~----~~~~~~~~~~i~~~~~~~~-----------------~~~l~~~~~dg~i~~wd  349 (602)
                       +.+|++|+.||.|++|+.....    ...+..|...|.+++|+|+                 +++|++++.|+.|++||
T Consensus       116 ~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd  195 (316)
T 3bg1_A          116 YGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWK  195 (316)
T ss_dssp             TCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEE
T ss_pred             CCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEE
Confidence             7899999999999999987531    3456789999999999997                 46899999999999999


Q ss_pred             CCCC---ceeEEeeeccCCeeeeeccCC-----CeEEEeeCCCeEEEEEcCCCc----eeeEeccCCCCeEEEEECCCCC
Q psy12697        350 AASG---QCEQQFSFHSAPALDVDWQSN-----TSFASCSTDQHIHVCKLHSDK----PVKSFEGHTNEVNAIKWDPQGL  417 (602)
Q Consensus       350 ~~~~---~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~i~i~d~~~~~----~~~~~~~~~~~i~~~~~~~~~~  417 (602)
                      ++..   +....+..|...+.+++|+|+     ..+++++.|+.|++|++.+..    ....+..|...|.+++|+|+++
T Consensus       196 ~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~  275 (316)
T 3bg1_A          196 EEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITAN  275 (316)
T ss_dssp             ECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTTC
T ss_pred             eCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcCCCC
Confidence            9765   456678889999999999997     469999999999999997631    2344567889999999999999


Q ss_pred             EEEEEECCCeEEEEeCC
Q psy12697        418 LLASCSDDMTLKIWSLD  434 (602)
Q Consensus       418 ~l~~~~~dg~i~iwd~~  434 (602)
                      +|++++.|+.|++|+..
T Consensus       276 ~las~~~D~~v~lw~~~  292 (316)
T 3bg1_A          276 ILAVSGGDNKVTLWKES  292 (316)
T ss_dssp             CEEEEESSSCEEEEEEC
T ss_pred             EEEEEcCCCeEEEEEEC
Confidence            99999999999999976

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=100.00  E-value=3.1e-36  Score=290.85  Aligned_cols=271  Identities=13%  Similarity=0.129  Sum_probs=236.9

Q ss_pred             CCCCceeEEeeCCCCCeEEEEeCCCeEEEEcCCCcc----eeecccccCCeEEEEEccCCC-EEEEEecCCcEEEEeC-C
Q psy12697        278 PSNKDVTSLDWNNNGSFLATGSYDGYARIWTSDGSL----KSTLGQHKGPIFALKWNKRGN-YILSAGVDKTTIIWDA-A  351 (602)
Q Consensus       278 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~----~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~~wd~-~  351 (602)
                      +|...|++++|+|++++|++++.||.|++|++....    ......|...|.+++|+|+++ +|++++.||.|++||+ .
T Consensus         9 ~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~   88 (342)
T 1yfq_A            9 APKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIG   88 (342)
T ss_dssp             CCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSS
T ss_pred             CCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEEecc
Confidence            567899999999999999999999999999987544    556668999999999999999 9999999999999999 7


Q ss_pred             CCceeEEeee--ccCCeeeeeccCCCeEEEeeCCCeEEEEEcCC---------CceeeEeccCCCCeEEEEECCCCCEEE
Q psy12697        352 SGQCEQQFSF--HSAPALDVDWQSNTSFASCSTDQHIHVCKLHS---------DKPVKSFEGHTNEVNAIKWDPQGLLLA  420 (602)
Q Consensus       352 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~---------~~~~~~~~~~~~~i~~~~~~~~~~~l~  420 (602)
                      +++. ..+..  |...+.++.|+++..+++++.|+.|++||+++         ++++..+. |...|.+++|+|++  ++
T Consensus        89 ~~~~-~~~~~~~~~~~v~~l~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~--l~  164 (342)
T 1yfq_A           89 SPSF-QALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-VKNKIFTMDTNSSR--LI  164 (342)
T ss_dssp             SSSE-EECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-SCCCEEEEEECSSE--EE
T ss_pred             CCce-EeccccCCCCceEEEEeCCCCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe-eCCceEEEEecCCc--EE
Confidence            7755 66777  89999999999977899999999999999988         77777776 88999999999987  99


Q ss_pred             EEECCCeEEEEeCCC-CeeeEeeccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEcc-CCCEEEEE
Q psy12697        421 SCSDDMTLKIWSLDK-DNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNK-RGNYILSA  498 (602)
Q Consensus       421 ~~~~dg~i~iwd~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~-~~~~l~s~  498 (602)
                      +++.|+.|++||+++ +......                                ....|...+.+++|+| ++++++++
T Consensus       165 ~~~~d~~i~i~d~~~~~~~~~~~--------------------------------~~~~~~~~i~~i~~~~~~~~~l~~~  212 (342)
T 1yfq_A          165 VGMNNSQVQWFRLPLCEDDNGTI--------------------------------EESGLKYQIRDVALLPKEQEGYACS  212 (342)
T ss_dssp             EEESTTEEEEEESSCCTTCCCEE--------------------------------EECSCSSCEEEEEECSGGGCEEEEE
T ss_pred             EEeCCCeEEEEECCcccccccee--------------------------------eecCCCCceeEEEECCCCCCEEEEE
Confidence            999999999999987 4321110                                1123567788999999 99999999


Q ss_pred             eCCCeEEEEeCCCC------ceeeeecccCC---------CeeEeeecCCc-eEEEeeCCCcEEEeecCCCCceeeeecc
Q psy12697        499 GVDKTTIIWDAASG------QCEQQFSFHSA---------PALDVDWQSNT-SFASCSTDQHIHVCKLHSDKPVKSFEGH  562 (602)
Q Consensus       499 ~~dg~i~iwd~~~~------~~~~~~~~~~~---------~v~~~~~s~~~-~l~~~~~d~~i~iw~~~~~~~~~~~~~~  562 (602)
                      +.||.|++|++...      +....+..|..         .|.+++|+|++ +|++++.||.|++||+.+++++..+.++
T Consensus       213 ~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~  292 (342)
T 1yfq_A          213 SIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKF  292 (342)
T ss_dssp             ETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCC
T ss_pred             ecCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhcc
Confidence            99999999999887      77788888865         99999999999 9999999999999999988888877765


Q ss_pred             -cccceEEEEecCCcEEEEEECCCCCeEEEeccCCe
Q psy12697        563 -TTGQLVHSYKGTGGIFEVCWNSRGDKVGASASDGS  597 (602)
Q Consensus       563 -~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~  597 (602)
                       .           +.|.+++  |+|++|++++.||.
T Consensus       293 h~-----------~~v~~~~--~~~~~l~s~s~Dg~  315 (342)
T 1yfq_A          293 NE-----------DSVVKIA--CSDNILCLATSDDT  315 (342)
T ss_dssp             SS-----------SEEEEEE--ECSSEEEEEEECTH
T ss_pred             cC-----------CCceEec--CCCCeEEEEecCCc
Confidence             4           6799999  99999999999998

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=100.00  E-value=6.2e-36  Score=288.75  Aligned_cols=289  Identities=11%  Similarity=0.121  Sum_probs=246.2

Q ss_pred             eCCCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEeeCCCCC-eEEE
Q psy12697        219 IGHESEVFICAWNPVKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGS-FLAT  297 (602)
Q Consensus       219 ~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~  297 (602)
                      .+|...|.+++|+|++++|++++.|+.|++|++.++.....  ...           ...|...|.+++|+|+++ +|++
T Consensus         8 ~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~--~~~-----------~~~~~~~v~~~~~~~~~~~~l~~   74 (342)
T 1yfq_A            8 QAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVD--LLQ-----------SLRYKHPLLCCNFIDNTDLQIYV   74 (342)
T ss_dssp             SCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEE--EEE-----------EEECSSCEEEEEEEESSSEEEEE
T ss_pred             cCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCcccc--cee-----------eeecCCceEEEEECCCCCcEEEE
Confidence            47999999999999999999999999999999987642100  111           113568899999999999 9999


Q ss_pred             EeCCCeEEEEcC-CCcceeeccc--ccCCeEEEEEccCCCEEEEEecCCcEEEEeCCC---------CceeEEeeeccCC
Q psy12697        298 GSYDGYARIWTS-DGSLKSTLGQ--HKGPIFALKWNKRGNYILSAGVDKTTIIWDAAS---------GQCEQQFSFHSAP  365 (602)
Q Consensus       298 ~~~dg~i~i~~~-~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~---------~~~~~~~~~~~~~  365 (602)
                      |+.||.|++|++ .......+..  |...|.+++|+| +++|++++.|+.|++||+++         ++++..+. +...
T Consensus        75 ~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~  152 (342)
T 1yfq_A           75 GTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-VKNK  152 (342)
T ss_dssp             EETTSCEEEECSSSSSSEEECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-SCCC
T ss_pred             EcCCCeEEEEEeccCCceEeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe-eCCc
Confidence            999999999999 8777788888  999999999999 99999999999999999987         76666666 7888


Q ss_pred             eeeeeccCCCeEEEeeCCCeEEEEEcCC-Cc--eeeEeccCCCCeEEEEECC-CCCEEEEEECCCeEEEEeCCCC-----
Q psy12697        366 ALDVDWQSNTSFASCSTDQHIHVCKLHS-DK--PVKSFEGHTNEVNAIKWDP-QGLLLASCSDDMTLKIWSLDKD-----  436 (602)
Q Consensus       366 ~~~~~~~~~~~~~~~~~~~~i~i~d~~~-~~--~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~-----  436 (602)
                      +.++.|+++. +++++.++.|++||+++ +.  .......|...+.+++|+| +++++++++.||.|++|+++..     
T Consensus       153 v~~~~~~~~~-l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~  231 (342)
T 1yfq_A          153 IFTMDTNSSR-LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYN  231 (342)
T ss_dssp             EEEEEECSSE-EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTT
T ss_pred             eEEEEecCCc-EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccc
Confidence            9999999888 99999999999999998 54  3345556888999999999 9999999999999999999876     


Q ss_pred             -eeeEeeccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCcee
Q psy12697        437 -NCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCE  515 (602)
Q Consensus       437 -~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~~~~~~~  515 (602)
                       +....+..|....                         .-..|...|.+++|+|++++|++++.||.|++||+.+++++
T Consensus       232 ~~~~~~~~~~~~~~-------------------------~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~  286 (342)
T 1yfq_A          232 SSKRFAFRCHRLNL-------------------------KDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKI  286 (342)
T ss_dssp             CTTCEEEECCCCCT-------------------------TCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEE
T ss_pred             cccceeeecccccc-------------------------cccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHh
Confidence             5555554443210                         01136678999999999999999999999999999999999


Q ss_pred             eeeccc-CCCeeEeeecCCc-eEEEeeCCCc-EEEeec
Q psy12697        516 QQFSFH-SAPALDVDWQSNT-SFASCSTDQH-IHVCKL  550 (602)
Q Consensus       516 ~~~~~~-~~~v~~~~~s~~~-~l~~~~~d~~-i~iw~~  550 (602)
                      ..+..| ..+|.+++  |++ .|++++.||. .+.|..
T Consensus       287 ~~~~~~h~~~v~~~~--~~~~~l~s~s~Dg~~~~~~~~  322 (342)
T 1yfq_A          287 KNFAKFNEDSVVKIA--CSDNILCLATSDDTFKTNAAI  322 (342)
T ss_dssp             EECCCCSSSEEEEEE--ECSSEEEEEEECTHHHHCSSS
T ss_pred             hhhhcccCCCceEec--CCCCeEEEEecCCcccccccc
Confidence            999998 99999999  899 9999999998 666653

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=100.00  E-value=5.6e-36  Score=300.45  Aligned_cols=299  Identities=15%  Similarity=0.302  Sum_probs=234.4

Q ss_pred             cCCCCceeEEeeCCCCCeEEEEeCCCeEEEEcCCCc------------ceeeccccc------------CCeEEEEEccC
Q psy12697        277 VPSNKDVTSLDWNNNGSFLATGSYDGYARIWTSDGS------------LKSTLGQHK------------GPIFALKWNKR  332 (602)
Q Consensus       277 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~------------~~~~~~~~~------------~~i~~~~~~~~  332 (602)
                      ..+...|++++|+|+|++|++|+.||.|++|+....            ....+.+|.            ..|.+++|+|+
T Consensus        25 ~~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~  104 (447)
T 3dw8_B           25 VAEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQ  104 (447)
T ss_dssp             CCGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCC
T ss_pred             ccccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCC
Confidence            345688999999999999999999999999997743            366777888            88999999999


Q ss_pred             C--CEEEEEecCCcEEEEeCCCCcee---------------------------------------EE-eeeccCCeeeee
Q psy12697        333 G--NYILSAGVDKTTIIWDAASGQCE---------------------------------------QQ-FSFHSAPALDVD  370 (602)
Q Consensus       333 ~--~~l~~~~~dg~i~~wd~~~~~~~---------------------------------------~~-~~~~~~~~~~~~  370 (602)
                      +  .+|++++.|+.|++||+.++...                                       .. ...|...+.+++
T Consensus       105 ~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~  184 (447)
T 3dw8_B          105 KNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSIS  184 (447)
T ss_dssp             CSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEE
T ss_pred             CCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEE
Confidence            8  79999999999999998764432                                       11 356888999999


Q ss_pred             ccCCCeEEEeeCCCeEEEEEcCC-Cceee-------EeccCCCCeEEEEECCCC-CEEEEEECCCeEEEEeCCCCee---
Q psy12697        371 WQSNTSFASCSTDQHIHVCKLHS-DKPVK-------SFEGHTNEVNAIKWDPQG-LLLASCSDDMTLKIWSLDKDNC---  438 (602)
Q Consensus       371 ~~~~~~~~~~~~~~~i~i~d~~~-~~~~~-------~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~---  438 (602)
                      |+|++.+++.+.|+.|++||+.+ ++.+.       .+.+|...|.+++|+|++ ++|++|+.||.|++||+++++.   
T Consensus       185 ~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~  264 (447)
T 3dw8_B          185 INSDYETYLSADDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDR  264 (447)
T ss_dssp             ECTTSSEEEEECSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCT
T ss_pred             EcCCCCEEEEeCCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccc
Confidence            99986644444899999999984 33433       366899999999999998 9999999999999999998775   


Q ss_pred             -eEeeccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCCCeEEEEeCCC-Cceee
Q psy12697        439 -VHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAAS-GQCEQ  516 (602)
Q Consensus       439 -~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~~~-~~~~~  516 (602)
                       +..+..|....                      ....+..|...|.+++|+|+|++|++++. +.|++||+.+ ++++.
T Consensus       265 ~~~~~~~~~~~~----------------------~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~  321 (447)
T 3dw8_B          265 HSKLFEEPEDPS----------------------NRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVE  321 (447)
T ss_dssp             TCEEECCC---------------------------CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSC
T ss_pred             eeeEeccCCCcc----------------------ccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccc
Confidence             45555443210                      01123346678999999999999999999 9999999997 88888


Q ss_pred             eecccCCC---------------eeEeeecCCc-eEEEeeCCCcEEEeecCCCCceeeeecccccc--------------
Q psy12697        517 QFSFHSAP---------------ALDVDWQSNT-SFASCSTDQHIHVCKLHSDKPVKSFEGHTTGQ--------------  566 (602)
Q Consensus       517 ~~~~~~~~---------------v~~~~~s~~~-~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~--------------  566 (602)
                      .+..|...               +..++|+|++ +|++++.||.|++||+.+++.+. +..+....              
T Consensus       322 ~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  400 (447)
T 3dw8_B          322 TYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDIT-LEASRENNKPRTVLKPRKVCAS  400 (447)
T ss_dssp             CEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEE-EECCSTTCCTTCBCCCCCEECS
T ss_pred             eeeccccccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCccee-eeecccccccccccCCcccccc
Confidence            88888642               2348999999 99999999999999999887653 22221100              


Q ss_pred             --------eEEEEecCCcEEEEEECCCCCeEEEeccCCeEE
Q psy12697        567 --------LVHSYKGTGGIFEVCWNSRGDKVGASASDGSVF  599 (602)
Q Consensus       567 --------~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~v~  599 (602)
                              ....+.....|..++|+|++++||+++.++...
T Consensus       401 ~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~~~~~~  441 (447)
T 3dw8_B          401 GKRKKDEISVDSLDFNKKILHTAWHPKENIIAVATTNNLYI  441 (447)
T ss_dssp             SCCCTTCEEGGGCCTTSCCCEEEECSSSSEEEEECSSCEEE
T ss_pred             CCcccccccccccccCCceeEEEECCCCCEEEEEecceeee
Confidence                    001122346789999999999999999988543

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=1.2e-34  Score=287.38  Aligned_cols=276  Identities=23%  Similarity=0.440  Sum_probs=230.5

Q ss_pred             CceeEEeeCCCCCeEEEEeCCCeEEEEcCC-Ccceee--cccccCCeEEEEEccCCCEEEEEecCCcEEEEeCCCCceeE
Q psy12697        281 KDVTSLDWNNNGSFLATGSYDGYARIWTSD-GSLKST--LGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQ  357 (602)
Q Consensus       281 ~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~-~~~~~~--~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~  357 (602)
                      -.++.|+|+++ +.|++|. |+.|++||.. ++....  +..|...|++++|+|+|++|++|+.||.|++||+.+++.+.
T Consensus       106 ~y~~~l~wS~~-n~lAvgl-d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~  183 (420)
T 4gga_A          106 YYLNLVDWSSG-NVLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLR  183 (420)
T ss_dssp             TTCBCEEECTT-SEEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEE
T ss_pred             ccceeEEECCC-CEEEEEe-CCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEE
Confidence            45788999976 4777765 8999999987 444443  34678889999999999999999999999999999999999


Q ss_pred             EeeeccCCeeeeeccCCCeEEEeeCCCeEEEEEcCCC-ceeeEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCC
Q psy12697        358 QFSFHSAPALDVDWQSNTSFASCSTDQHIHVCKLHSD-KPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKD  436 (602)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~  436 (602)
                      .+..|...+.++.+. +..+++++.|+.+.+||.... ..+..+.+|...+..+.++|+++++++++.|+.+++|+..++
T Consensus       184 ~~~~h~~~v~~~s~~-~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~  262 (420)
T 4gga_A          184 NMTSHSARVGSLSWN-SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPG  262 (420)
T ss_dssp             EECCCSSCEEEEEEE-TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCC
T ss_pred             EEeCCCCceEEEeeC-CCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCCeeeeeeccccceEEeeccc
Confidence            999999999999886 467899999999999998864 456788999999999999999999999999999999999876


Q ss_pred             eeeEeeccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCC-CEEEE--EeCCCeEEEEeCCCCc
Q psy12697        437 NCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRG-NYILS--AGVDKTTIIWDAASGQ  513 (602)
Q Consensus       437 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~-~~l~s--~~~dg~i~iwd~~~~~  513 (602)
                      +.....                              ......|...|.+++|+|++ .++++  |+.|+.|++||+.+++
T Consensus       263 ~~~~~~------------------------------~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~  312 (420)
T 4gga_A          263 EGGWVP------------------------------LQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGA  312 (420)
T ss_dssp             SSCSCC------------------------------SEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTE
T ss_pred             ccccee------------------------------eeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccc
Confidence            432110                              01122355666667777654 45554  4579999999999999


Q ss_pred             eeeeecccCCCeeEeeecCCc-eEEEee--CCCcEEEeecCCCCceeeeecccccceEEEEecCCcEEEEEECCCCCeEE
Q psy12697        514 CEQQFSFHSAPALDVDWQSNT-SFASCS--TDQHIHVCKLHSDKPVKSFEGHTTGQLVHSYKGTGGIFEVCWNSRGDKVG  590 (602)
Q Consensus       514 ~~~~~~~~~~~v~~~~~s~~~-~l~~~~--~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~  590 (602)
                      +...+..| ..+.++.|+|++ .+++++  .|+.|+|||+.+++++..+.+|.           +.|.+++|+|||++||
T Consensus       313 ~~~~~~~~-~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~-----------~~V~~l~~spdg~~l~  380 (420)
T 4gga_A          313 CLSAVDAH-SQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHT-----------SRVLSLTMSPDGATVA  380 (420)
T ss_dssp             EEEEEECS-SCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCS-----------SCEEEEEECTTSSCEE
T ss_pred             cceeeccc-cceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCC-----------CCEEEEEEcCCCCEEE
Confidence            99888754 578899999999 666554  79999999999999999998886           7799999999999999


Q ss_pred             EeccCCeEEee
Q psy12697        591 ASASDGSVFKN  601 (602)
Q Consensus       591 ~~~~dg~v~i~  601 (602)
                      +|+.||+|+|+
T Consensus       381 S~s~D~tvriW  391 (420)
T 4gga_A          381 SAAADETLRLW  391 (420)
T ss_dssp             EEETTTEEEEE
T ss_pred             EEecCCeEEEE
Confidence            99999999985

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.2e-35  Score=296.97  Aligned_cols=273  Identities=14%  Similarity=0.196  Sum_probs=218.2

Q ss_pred             eCCCcceEEEEEcC-CCCEEEEeeCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEeeCCCCCeEEE
Q psy12697        219 IGHESEVFICAWNP-VKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFLAT  297 (602)
Q Consensus       219 ~~h~~~v~~~~~~~-~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~  297 (602)
                      .+|...|.+++|+| ++++|++|+.||+|++||+.+...........           ...|...|.+++|+|++++|++
T Consensus        60 ~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~-----------~~~h~~~v~~~~~~~~~~~l~s  128 (437)
T 3gre_A           60 ENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSL-----------TYDCSSTVTQITMIPNFDAFAV  128 (437)
T ss_dssp             TTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSE-----------EEECSSCEEEEEECTTSSEEEE
T ss_pred             cCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceee-----------eccCCCCEEEEEEeCCCCEEEE
Confidence            57999999999999 99999999999999999987621111111111           1125788999999999999999


Q ss_pred             EeCCCeEEEEcC----CCcceeecccccCCeEEEEEccCCCEEEEEecCCcEEEEeCCCCceeEEeeeccCCeeeee--c
Q psy12697        298 GSYDGYARIWTS----DGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVD--W  371 (602)
Q Consensus       298 ~~~dg~i~i~~~----~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~--~  371 (602)
                      |+.||.|++||+    .+........|  .+..+.|+|++                            +...+.++.  +
T Consensus       129 ~s~dg~i~vwd~~~~~~~~~~~~~~~~--~i~~~~~~~~~----------------------------~~~~~~~~~~~~  178 (437)
T 3gre_A          129 SSKDGQIIVLKVNHYQQESEVKFLNCE--CIRKINLKNFG----------------------------KNEYAVRMRAFV  178 (437)
T ss_dssp             EETTSEEEEEEEEEEEETTEEEEEEEE--EEEEEEGGGGS----------------------------SCCCEEEEEEEE
T ss_pred             EeCCCEEEEEEeccccCCceeeccccc--eeEEEEccCcc----------------------------cccCceEEEEEE
Confidence            999999999997    35555544444  67777777753                            111122222  3


Q ss_pred             cCC-CeEEEeeCCCeEEEEEcCCCceeeEecc--CCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeeeEeec-cccc
Q psy12697        372 QSN-TSFASCSTDQHIHVCKLHSDKPVKSFEG--HTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHDLQ-AHNK  447 (602)
Q Consensus       372 ~~~-~~~~~~~~~~~i~i~d~~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~  447 (602)
                      +++ ..+++++.|+.|++||+++++.+..+.+  |...|++++|+|++++|++|+.||.|++||+++++++..+. .+..
T Consensus       179 ~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~  258 (437)
T 3gre_A          179 NEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHA  258 (437)
T ss_dssp             CSSCEEEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCE
T ss_pred             cCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCC
Confidence            333 5688999999999999999999999988  88999999999999999999999999999999999888875 5666


Q ss_pred             cEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeeecc-------
Q psy12697        448 EIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSF-------  520 (602)
Q Consensus       448 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-------  520 (602)
                      .|.+++|+|.                              |+|++++|++++.||.|++||+.+++++..+.+       
T Consensus       259 ~v~~~~~~~~------------------------------~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~  308 (437)
T 3gre_A          259 PITHVEVCQF------------------------------YGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSM  308 (437)
T ss_dssp             EEEEEEECTT------------------------------TCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCG
T ss_pred             ceEEEEeccc------------------------------cCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCcc
Confidence            6666666553                              456788999999999999999999988877664       


Q ss_pred             -------------------cCCCeeEeeecCCc-eEEEeeCCCcEEEeecCCCCceeeeeccc
Q psy12697        521 -------------------HSAPALDVDWQSNT-SFASCSTDQHIHVCKLHSDKPVKSFEGHT  563 (602)
Q Consensus       521 -------------------~~~~v~~~~~s~~~-~l~~~~~d~~i~iw~~~~~~~~~~~~~~~  563 (602)
                                         |...|++++|+ ++ .|++++.|+.|++||+.+++....+.++.
T Consensus       309 ~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~  370 (437)
T 3gre_A          309 EHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELSSSKAVISPS  370 (437)
T ss_dssp             GGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGGCEEEECC-
T ss_pred             ceecccccccccceecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCcccceEEeccc
Confidence                               44557888888 56 99999999999999999999888887764

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=100.00  E-value=1.5e-34  Score=286.32  Aligned_cols=293  Identities=19%  Similarity=0.356  Sum_probs=238.9

Q ss_pred             CCCCceeEEeeCC-CCCeEEEEeCCCeEEEEcCCCcc-eeec-------------ccccCCeEEEEEcc-CCCEEEEEec
Q psy12697        278 PSNKDVTSLDWNN-NGSFLATGSYDGYARIWTSDGSL-KSTL-------------GQHKGPIFALKWNK-RGNYILSAGV  341 (602)
Q Consensus       278 ~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~~~~~~~-~~~~-------------~~~~~~i~~~~~~~-~~~~l~~~~~  341 (602)
                      .|...|++++|+| ++++|++|+.||.|++|++.... ...+             ..|...|.+++|+| ++++|++++.
T Consensus        41 ~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~  120 (408)
T 4a11_B           41 IHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSF  120 (408)
T ss_dssp             CCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEET
T ss_pred             ccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEEeC
Confidence            3678999999999 99999999999999999987432 2111             25999999999999 7789999999


Q ss_pred             CCcEEEEeCCCCceeEEeeeccCCeeeeeccCCC----eEEEeeCCCeEEEEEcCCCceeeEeccCCCCeEEEEECCCCC
Q psy12697        342 DKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNT----SFASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGL  417 (602)
Q Consensus       342 dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~  417 (602)
                      ||.|++||+.+++....+. +...+.++.+.+..    .+++++.++.|++||+.+++.+..+.+|...|.+++|+|+++
T Consensus       121 d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~  199 (408)
T 4a11_B          121 DKTLKVWDTNTLQTADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYD  199 (408)
T ss_dssp             TSEEEEEETTTTEEEEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCEEEEEECSSCT
T ss_pred             CCeEEEeeCCCCccceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEEEEECCCCC
Confidence            9999999999998887776 56678888887643    689999999999999999999999999999999999999998


Q ss_pred             -EEEEEECCCeEEEEeCCCCe-eeEeeccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEE
Q psy12697        418 -LLASCSDDMTLKIWSLDKDN-CVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYI  495 (602)
Q Consensus       418 -~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l  495 (602)
                       +|++++.||.|++||++++. ++..+..+....                   ..........|...|.+++|+|++++|
T Consensus       200 ~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~v~~~~~~~~~~~l  260 (408)
T 4a11_B          200 YILATASADSRVKLWDVRRASGCLITLDQHNGKK-------------------SQAVESANTAHNGKVNGLCFTSDGLHL  260 (408)
T ss_dssp             TEEEEEETTSCEEEEETTCSSCCSEECCTTTTCS-------------------CCCTTTSSCSCSSCEEEEEECTTSSEE
T ss_pred             cEEEEEcCCCcEEEEECCCCCccccccccccccc-------------------ceeeccccccccCceeEEEEcCCCCEE
Confidence             58999999999999998765 444443322110                   011122345688999999999999999


Q ss_pred             EEEeCCCeEEEEeCCCCceeeeecccCC-----Ce-eEeeecCCceEEEeeCCCcEEEeecCCCCceeeeecccccceEE
Q psy12697        496 LSAGVDKTTIIWDAASGQCEQQFSFHSA-----PA-LDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEGHTTGQLVH  569 (602)
Q Consensus       496 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~-----~v-~~~~~s~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~  569 (602)
                      ++++.||.|++||+.+++....+..+..     .+ ......+...+++++.|+.|++||+.+++++..+.+|.      
T Consensus       261 ~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~------  334 (408)
T 4a11_B          261 LTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHY------  334 (408)
T ss_dssp             EEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCS------
T ss_pred             EEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCC------
Confidence            9999999999999999887655543221     11 22222233388888999999999999999888887765      


Q ss_pred             EEecCCcEEEEEECCCCCeEEEeccCCeEEee
Q psy12697        570 SYKGTGGIFEVCWNSRGDKVGASASDGSVFKN  601 (602)
Q Consensus       570 ~~~~~~~i~~l~~spdg~~l~~~~~dg~v~i~  601 (602)
                           +.|.+++|+|++++|++++.||.|+++
T Consensus       335 -----~~v~~~~~s~~~~~l~s~~~dg~i~iw  361 (408)
T 4a11_B          335 -----KTVDCCVFQSNFQELYSGSRDCNILAW  361 (408)
T ss_dssp             -----SCEEEEEEETTTTEEEEEETTSCEEEE
T ss_pred             -----CeEEEEEEcCCCCEEEEECCCCeEEEE
Confidence                 779999999999999999999999874

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.6e-35  Score=288.74  Aligned_cols=253  Identities=23%  Similarity=0.356  Sum_probs=211.4

Q ss_pred             ceeeeeeeccCCceEEEEECCCCCeEEEeeCCceEEEEecCC--ceeEEEeeccCceEEEEeCCCCCCCCCCCCcccccc
Q psy12697        130 GECLNTLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSART--GQLVHSYKGTGGIFEVCWNSRGTPPNPPESMEVDAS  207 (602)
Q Consensus       130 ~~~~~~l~~h~~~V~~~~~s~d~~~l~s~~~d~~v~iwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  207 (602)
                      |+++..+.+|.+.|++++|+|++++||+++.||.|+|||+..  ++.+                                
T Consensus         1 G~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~--------------------------------   48 (379)
T 3jrp_A            1 GSMVVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLI--------------------------------   48 (379)
T ss_dssp             ----CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEE--------------------------------
T ss_pred             CCccEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceee--------------------------------
Confidence            456788999999999999999999999999999999999973  3333                                


Q ss_pred             ccccCCcceEeeCCCcceEEEEEcCC--CCEEEEeeCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeE
Q psy12697        208 IEIPQSKATKLIGHESEVFICAWNPV--KDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTS  285 (602)
Q Consensus       208 ~~~~~~~~~~l~~h~~~v~~~~~~~~--~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  285 (602)
                              ..+.+|...|.+++|+|+  +++|++++.||.|++||+.++...      ...        ....|...|.+
T Consensus        49 --------~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~------~~~--------~~~~~~~~v~~  106 (379)
T 3jrp_A           49 --------DTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWS------QIA--------VHAVHSASVNS  106 (379)
T ss_dssp             --------EEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEETTEEE------EEE--------EECCCSSCEEE
T ss_pred             --------eEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCcee------Eee--------eecCCCcceEE
Confidence                    445679999999999987  899999999999999999875310      000        11235688999


Q ss_pred             EeeCCC--CCeEEEEeCCCeEEEEcCCCc---ceeecccccCCeEEEEEcc-------------CCCEEEEEecCCcEEE
Q psy12697        286 LDWNNN--GSFLATGSYDGYARIWTSDGS---LKSTLGQHKGPIFALKWNK-------------RGNYILSAGVDKTTII  347 (602)
Q Consensus       286 ~~~~~~--~~~l~~~~~dg~i~i~~~~~~---~~~~~~~~~~~i~~~~~~~-------------~~~~l~~~~~dg~i~~  347 (602)
                      ++|+|+  +.++++++.||.|++||+...   ....+..|...|.+++|+|             ++++|++++.||.|++
T Consensus       107 ~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i  186 (379)
T 3jrp_A          107 VQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKI  186 (379)
T ss_dssp             EEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEE
T ss_pred             EEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEE
Confidence            999999  999999999999999998743   4456678999999999999             6999999999999999


Q ss_pred             EeCCCCc----eeEEeeeccCCeeeeeccCC----CeEEEeeCCCeEEEEEcCCCc-----eeeEeccCCCCeEEEEECC
Q psy12697        348 WDAASGQ----CEQQFSFHSAPALDVDWQSN----TSFASCSTDQHIHVCKLHSDK-----PVKSFEGHTNEVNAIKWDP  414 (602)
Q Consensus       348 wd~~~~~----~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~i~i~d~~~~~-----~~~~~~~~~~~i~~~~~~~  414 (602)
                      ||++++.    ....+..|...+.+++|+|+    ..+++++.||.|++||+.++.     .+.....|...|.+++|+|
T Consensus       187 ~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~  266 (379)
T 3jrp_A          187 WKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSL  266 (379)
T ss_dssp             EEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECS
T ss_pred             EEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcC
Confidence            9998765    34566778999999999997    458899999999999999864     2233344888999999999


Q ss_pred             CCCEEEEEECCCeEEEEeCCCC
Q psy12697        415 QGLLLASCSDDMTLKIWSLDKD  436 (602)
Q Consensus       415 ~~~~l~~~~~dg~i~iwd~~~~  436 (602)
                      ++++|++++.||.|++|++...
T Consensus       267 ~g~~l~~~~~dg~i~iw~~~~~  288 (379)
T 3jrp_A          267 SGNVLALSGGDNKVTLWKENLE  288 (379)
T ss_dssp             SSCCEEEEESSSSEEEEEEEET
T ss_pred             CCCEEEEecCCCcEEEEeCCCC
Confidence            9999999999999999999754

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=100.00  E-value=1.8e-34  Score=287.69  Aligned_cols=264  Identities=22%  Similarity=0.452  Sum_probs=232.0

Q ss_pred             CCceeEEeeCCCCCeEEEEeCCCeEEEEcCC-CcceeecccccCCeEEEEEccCCCEEEEEecCCcEEEEeCCCCceeEE
Q psy12697        280 NKDVTSLDWNNNGSFLATGSYDGYARIWTSD-GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQ  358 (602)
Q Consensus       280 ~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~  358 (602)
                      ...|.++++  +++++++|+.||.|++||.. ++....+.+|...|.+++|  ++++|++++.||.|++||+.+++.+..
T Consensus       133 ~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~  208 (435)
T 1p22_A          133 SKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNT  208 (435)
T ss_dssp             CCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEE
T ss_pred             CCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCcEEEE
Confidence            466888877  78899999999999999976 6677788899999999999  788999999999999999999999999


Q ss_pred             eeeccCCeeeeeccCCCeEEEeeCCCeEEEEEcCCCcee---eEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEeCCC
Q psy12697        359 FSFHSAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKPV---KSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDK  435 (602)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~---~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~  435 (602)
                      +..|...+.++.|++ +.+++++.||.|++||+.+++..   ..+.+|...|.+++|  ++++|++|+.||.|++||+++
T Consensus       209 ~~~h~~~v~~l~~~~-~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~vwd~~~  285 (435)
T 1p22_A          209 LIHHCEAVLHLRFNN-GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTST  285 (435)
T ss_dssp             ECCCCSCEEEEECCT-TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTT
T ss_pred             EcCCCCcEEEEEEcC-CEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCc
Confidence            999999999999974 58999999999999999988765   677899999999999  788999999999999999999


Q ss_pred             CeeeEeeccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCcee
Q psy12697        436 DNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCE  515 (602)
Q Consensus       436 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~~~~~~~  515 (602)
                      ++.+..+..|...+.++                                  .|  +++++++|+.||.|++||+.+++++
T Consensus       286 ~~~~~~~~~~~~~v~~~----------------------------------~~--~~~~l~~g~~dg~i~iwd~~~~~~~  329 (435)
T 1p22_A          286 CEFVRTLNGHKRGIACL----------------------------------QY--RDRLVVSGSSDNTIRLWDIECGACL  329 (435)
T ss_dssp             CCEEEEEECCSSCEEEE----------------------------------EE--ETTEEEEEETTSCEEEEETTTCCEE
T ss_pred             CcEEEEEcCCCCcEEEE----------------------------------Ee--CCCEEEEEeCCCeEEEEECCCCCEE
Confidence            98888877665555444                                  44  3578999999999999999999999


Q ss_pred             eeecccCCCeeEeeecCCc-eEEEeeCCCcEEEeecCCCC---------ceeeeecccccceEEEEecCCcEEEEEECCC
Q psy12697        516 QQFSFHSAPALDVDWQSNT-SFASCSTDQHIHVCKLHSDK---------PVKSFEGHTTGQLVHSYKGTGGIFEVCWNSR  585 (602)
Q Consensus       516 ~~~~~~~~~v~~~~~s~~~-~l~~~~~d~~i~iw~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd  585 (602)
                      ..+.+|...|.+++|  ++ .|++|+.||.|++||+.+++         ++..+.+|           .+.|.+++|  +
T Consensus       330 ~~~~~h~~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h-----------~~~v~~l~~--~  394 (435)
T 1p22_A          330 RVLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEH-----------SGRVFRLQF--D  394 (435)
T ss_dssp             EEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCC-----------SSCCCCEEE--C
T ss_pred             EEEeCCcCcEEEEEe--cCCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCC-----------CCCeEEEEe--C
Confidence            999999999999999  55 99999999999999987654         34444443           377999999  7


Q ss_pred             CCeEEEeccCCeEEee
Q psy12697        586 GDKVGASASDGSVFKN  601 (602)
Q Consensus       586 g~~l~~~~~dg~v~i~  601 (602)
                      +++|++++.||.|++.
T Consensus       395 ~~~l~s~s~Dg~i~iw  410 (435)
T 1p22_A          395 EFQIVSSSHDDTILIW  410 (435)
T ss_dssp             SSCEEECCSSSEEEEE
T ss_pred             CCEEEEEeCCCEEEEE
Confidence            8999999999999874

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=100.00  E-value=9.5e-34  Score=270.44  Aligned_cols=275  Identities=23%  Similarity=0.427  Sum_probs=227.1

Q ss_pred             ceeEEeeCCCCCeEEEEeCCCeEEEEcCC-Ccceeec--ccccCCeEEEEEccCCCEEEEEecCCcEEEEeCCCCceeEE
Q psy12697        282 DVTSLDWNNNGSFLATGSYDGYARIWTSD-GSLKSTL--GQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQ  358 (602)
Q Consensus       282 ~i~~~~~~~~~~~l~~~~~dg~i~i~~~~-~~~~~~~--~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~  358 (602)
                      ..++|+||+++ +|++| .|+.|++||.. ++....+  ..|...|.+++|+|++++|++|+.||+|++||+++++++..
T Consensus        27 y~~~l~WS~~~-~lAvg-~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~  104 (318)
T 4ggc_A           27 YLNLVDWSSGN-VLAVA-LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRN  104 (318)
T ss_dssp             TCBCEEECTTS-EEEEE-ETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEE
T ss_pred             cceEEEECCCC-EEEEE-eCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEE
Confidence            35789999986 66665 58999999986 5555544  46788899999999999999999999999999999999999


Q ss_pred             eeeccCCeeeeeccCCCeEEEeeCCCeEEEEEcCCC-ceeeEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCe
Q psy12697        359 FSFHSAPALDVDWQSNTSFASCSTDQHIHVCKLHSD-KPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDN  437 (602)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~  437 (602)
                      +..|...+.++.+.+ ..+++++.++.+.+|+.... ..+..+.+|...+..+.+++++++|++++.||.|++||+++++
T Consensus       105 ~~~h~~~~~~~~~~~-~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~  183 (318)
T 4ggc_A          105 MTSHSARVGSLSWNS-YILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGE  183 (318)
T ss_dssp             EECCSSCEEEEEEET-TEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBT
T ss_pred             ecCccceEEEeecCC-CEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCc
Confidence            999998888776653 57899999999999998876 4567888999999999999999999999999999999998765


Q ss_pred             eeEeeccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCE---EEEEeCCCeEEEEeCCCCce
Q psy12697        438 CVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNY---ILSAGVDKTTIIWDAASGQC  514 (602)
Q Consensus       438 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~---l~s~~~dg~i~iwd~~~~~~  514 (602)
                      ......                              .....+.+.|.+++++|++..   +++++.++.|++||......
T Consensus       184 ~~~~~~------------------------------~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~  233 (318)
T 4ggc_A          184 GGWVPL------------------------------QTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGAC  233 (318)
T ss_dssp             TBSCCS------------------------------EEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCE
T ss_pred             ccccce------------------------------eeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccc
Confidence            322111                              011224555666666665543   34677889999999998877


Q ss_pred             eeeecccCCCeeEeeecCCc-eEEEe--eCCCcEEEeecCCCCceeeeecccccceEEEEecCCcEEEEEECCCCCeEEE
Q psy12697        515 EQQFSFHSAPALDVDWQSNT-SFASC--STDQHIHVCKLHSDKPVKSFEGHTTGQLVHSYKGTGGIFEVCWNSRGDKVGA  591 (602)
Q Consensus       515 ~~~~~~~~~~v~~~~~s~~~-~l~~~--~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~  591 (602)
                      ..... +...+..+.|+|++ .++++  +.|+.|++||+.+++++..+.+|.           +.|++++|+|||++||+
T Consensus       234 ~~~~~-~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~-----------~~V~~l~~spdg~~l~S  301 (318)
T 4ggc_A          234 LSAVD-AHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHT-----------SRVLSLTMSPDGATVAS  301 (318)
T ss_dssp             EEEEE-CSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCS-----------SCEEEEEECTTSSCEEE
T ss_pred             ccccc-ceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcCCC-----------CCEEEEEEcCCCCEEEE
Confidence            66554 77789999999998 65554  479999999999999999998876           77999999999999999


Q ss_pred             eccCCeEEee
Q psy12697        592 SASDGSVFKN  601 (602)
Q Consensus       592 ~~~dg~v~i~  601 (602)
                      |+.||+|+|+
T Consensus       302 ~s~D~~v~iW  311 (318)
T 4ggc_A          302 AAADETLRLW  311 (318)
T ss_dssp             EETTTEEEEE
T ss_pred             EecCCeEEEE
Confidence            9999999985

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=2.9e-35  Score=279.59  Aligned_cols=258  Identities=22%  Similarity=0.363  Sum_probs=203.0

Q ss_pred             ecccccCCeEEEEEccCCCEEEEEecCCcEEEEeCCCCc--eeEEeeeccCCeeeeeccC---CCeEEEeeCCCeEEEEE
Q psy12697        316 TLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQ--CEQQFSFHSAPALDVDWQS---NTSFASCSTDQHIHVCK  390 (602)
Q Consensus       316 ~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~--~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~i~i~d  390 (602)
                      .+.+|...|.+++|+|+|++|++++.|++|++||+.++.  .+..+..|...|.+++|++   +..+++++.|+.|++||
T Consensus         8 ~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd   87 (316)
T 3bg1_A            8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWR   87 (316)
T ss_dssp             ------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEEC
T ss_pred             ecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEE
Confidence            456899999999999999999999999999999998875  4567889999999999975   46799999999999999


Q ss_pred             cCCC--ceeeEeccCCCCeEEEEECCC--CCEEEEEECCCeEEEEeCCCCee---eEeeccccccEEEEEECCCCCCCCC
Q psy12697        391 LHSD--KPVKSFEGHTNEVNAIKWDPQ--GLLLASCSDDMTLKIWSLDKDNC---VHDLQAHNKEIYTIKWSPTGPETSN  463 (602)
Q Consensus       391 ~~~~--~~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~---~~~~~~~~~~i~~~~~~~~~~~~~~  463 (602)
                      ++++  +....+.+|...|.+++|+|+  +.+|++|+.|+.|++||++.+..   ...+..|...+.+++|+|+......
T Consensus        88 ~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~  167 (316)
T 3bg1_A           88 EENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSL  167 (316)
T ss_dssp             CSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC---
T ss_pred             CCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCccc
Confidence            9887  456778899999999999998  88999999999999999987532   3445667777777777776421000


Q ss_pred             CCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCC---ceeeeecccCCCeeEeeecCCc-----e
Q psy12697        464 PNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASG---QCEQQFSFHSAPALDVDWQSNT-----S  535 (602)
Q Consensus       464 ~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~~~~---~~~~~~~~~~~~v~~~~~s~~~-----~  535 (602)
                                   ..+...    ...+++++|++|+.|+.|++||+..+   +++..+.+|...|.+++|+|++     .
T Consensus       168 -------------~~~~~~----~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~  230 (316)
T 3bg1_A          168 -------------IDHPSG----QKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTST  230 (316)
T ss_dssp             ----------------CCS----CCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCE
T ss_pred             -------------cccccc----cCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCce
Confidence                         000000    01123678999999999999999755   4677889999999999999973     7


Q ss_pred             EEEeeCCCcEEEeecCCCC----ceeeeecccccceEEEEecCCcEEEEEECCCCCeEEEeccCCeEEee
Q psy12697        536 FASCSTDQHIHVCKLHSDK----PVKSFEGHTTGQLVHSYKGTGGIFEVCWNSRGDKVGASASDGSVFKN  601 (602)
Q Consensus       536 l~~~~~d~~i~iw~~~~~~----~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~v~i~  601 (602)
                      |++++.|++|++|++.+..    ....+..           ..+.|.+++|+|+|++||+++.||.|+|.
T Consensus       231 las~s~D~~v~iw~~~~~~~~~~~~~~~~~-----------~~~~v~~v~~sp~g~~las~~~D~~v~lw  289 (316)
T 3bg1_A          231 IASCSQDGRVFIWTCDDASSNTWSPKLLHK-----------FNDVVWHVSWSITANILAVSGGDNKVTLW  289 (316)
T ss_dssp             EEEEETTCEEEEEECSSTTCCCCBCCEEEE-----------CSSCEEEEEECTTTCCEEEEESSSCEEEE
T ss_pred             EEEEcCCCeEEEEEccCccccchhhhhhhc-----------CCCcEEEEEEcCCCCEEEEEcCCCeEEEE
Confidence            9999999999999987632    1112222           24789999999999999999999999874

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.2e-36  Score=292.54  Aligned_cols=307  Identities=12%  Similarity=0.161  Sum_probs=233.6

Q ss_pred             CCCCcccCCcceeccceeeeecccceeeeeeeccCCceEEEEECCCCCeEEEeeCCceEEEEecCCceeEEEeeccCceE
Q psy12697        106 STGPAITNGEEVHRLTLPLWDVERGECLNTLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKGTGGIF  185 (602)
Q Consensus       106 ~~~~~~~~~~~~~~~~i~vwd~~~~~~~~~l~~h~~~V~~~~~s~d~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~  185 (602)
                      ++|..++++.  .+.+|+  |.+.+   +.+++|...|.+++|+|+|       .++.+.+|+.+....+          
T Consensus        25 pDG~~iASas--~D~TV~--d~~~~---~~l~gh~~~v~~V~FsPdg-------~~~~~~~~~~~~~~~~----------   80 (588)
T 2j04_A           25 RDGTLYLTTF--PDISIG--QPKYA---KDINCNSKNLFHVKEFPLE-------FENKLDFELAQQNGLL----------   80 (588)
T ss_dssp             TTSCEEEECS--SSEEEE--EECCC---SCCSSBGGGTEEEEEECCC-------CCCTTTTSCCCSSCSS----------
T ss_pred             CCCCEEEEEc--CCceee--ccccc---ceecCCCccEEEEEECCCC-------CcceEEEEeCCCceEe----------
Confidence            4555555543  356787  65555   4558999999999999999       4555555543321111          


Q ss_pred             EEEeCCCCCCCCCCCCccccccccccCCcceEeeCCCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCccceEE
Q psy12697        186 EVCWNSRGTPPNPPESMEVDASIEIPQSKATKLIGHESEVFICAWNPVKDFLASGSGDSTARIWDMTDSTKKDPKELQIV  265 (602)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~  265 (602)
                                                      -.+|...|.+++|+|+|..||+++.||.|++||.+.           .
T Consensus        81 --------------------------------~~~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~-----------~  117 (588)
T 2j04_A           81 --------------------------------NSQPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK-----------M  117 (588)
T ss_dssp             --------------------------------TTSCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE-----------E
T ss_pred             --------------------------------ecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc-----------e
Confidence                                            014678899999999999999999999999999533           0


Q ss_pred             EEEEecCCCcccCCCCceeEEeeCCCCCeEEEEeCCCeEEEEcCCCcc--------eeec----ccccCCeEEEEEccCC
Q psy12697        266 LRHCISKGGTEVPSNKDVTSLDWNNNGSFLATGSYDGYARIWTSDGSL--------KSTL----GQHKGPIFALKWNKRG  333 (602)
Q Consensus       266 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~--------~~~~----~~~~~~i~~~~~~~~~  333 (602)
                      ... ..  ....-....+.+++|+|||++|++|+.||.|++|++.+..        ...+    .+|...|.+++|+|+|
T Consensus       118 l~~-l~--~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg  194 (588)
T 2j04_A          118 LTN-LD--SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV  194 (588)
T ss_dssp             EEE-CC--CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE
T ss_pred             eee-cc--CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc
Confidence            000 00  0000012369999999999999999999999999988653        3454    6788899999999999


Q ss_pred             CEEEEEecCCcEEEEeCCCCcee---EEe-eeccCCeeeeeccCCCeEEEeeCCCeEEEEEcCCCceeeEeccCCCCeEE
Q psy12697        334 NYILSAGVDKTTIIWDAASGQCE---QQF-SFHSAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNA  409 (602)
Q Consensus       334 ~~l~~~~~dg~i~~wd~~~~~~~---~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~  409 (602)
                        +++++.|+++++||+..++..   ..+ ..|...|.+++|+ +..+++++ ++.|++||+.+++......+|...+..
T Consensus       195 --Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFs-g~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~~V~~  270 (588)
T 2j04_A          195 --LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIV-DYKVVLTC-PGYVHKIDLKNYSISSLKTGSLENFHI  270 (588)
T ss_dssp             --EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEE-TTEEEEEC-SSEEEEEETTTTEEEEEECSCCSCCCE
T ss_pred             --EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEEE-CCEEEEEe-CCeEEEEECCCCeEEEEEcCCCceEEE
Confidence              888999999999999887742   455 4677899999999 67777776 699999999988874444489999999


Q ss_pred             EEE--CCCCCEEEEEECCCeEEEEeCCCCeeeEeeccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEE
Q psy12697        410 IKW--DPQGLLLASCSDDMTLKIWSLDKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALK  487 (602)
Q Consensus       410 ~~~--~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~  487 (602)
                      ++|  +|++..|+++++||+ ++|..+.                                                  ++
T Consensus       271 va~~~s~d~~~La~a~edG~-klw~~d~--------------------------------------------------~~  299 (588)
T 2j04_A          271 IPLNHEKESTILLMSNKTSY-KVLLEDE--------------------------------------------------LH  299 (588)
T ss_dssp             EEETTCSSCEEEEECSSCEE-EEEESSS--------------------------------------------------EE
T ss_pred             EEeeeCCCCCEEEEEcCCCC-EEEeecc--------------------------------------------------EE
Confidence            999  999999999999999 9998761                                                  23


Q ss_pred             EccCCCEEEEEeCCCeEEEEeCCCCceeeeecccCCCeeEeeecCCc-eEEEeeC
Q psy12697        488 WNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNT-SFASCST  541 (602)
Q Consensus       488 ~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~-~l~~~~~  541 (602)
                      ++||+..+++.  |+++++|+...+. +..+.+ ...|.+++||||| .+|+++.
T Consensus       300 ~spd~~l~a~~--d~~v~lW~~~g~~-l~~~~~-~~~I~~va~SPdG~~lA~~~~  350 (588)
T 2j04_A          300 VTADNIIAPYL--EKKFKKWSTIWNE-FNNYET-TLVIHGISLSPDGYSIAIVYD  350 (588)
T ss_dssp             EECCCSSHHHH--HHHHHHTTTTTTS-SSSSCC-EEEEEEEEECTTSSEEEEEEE
T ss_pred             ECCCceEEEEc--CCEEEEEECCCCc-eeeecc-ceEEEEEEECCCCCEEEEEEe
Confidence            45566666664  9999999976444 445554 6679999999999 7777653

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=100.00  E-value=3.9e-33  Score=269.26  Aligned_cols=290  Identities=14%  Similarity=0.197  Sum_probs=201.3

Q ss_pred             eeecccceeeeeeeccCCceEEEEECCCCCeEEEeeCCceEEEEecCCceeEEEeeccCceEEEEeCCCCCCCCCCCCcc
Q psy12697        124 LWDVERGECLNTLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKGTGGIFEVCWNSRGTPPNPPESME  203 (602)
Q Consensus       124 vwd~~~~~~~~~l~~h~~~V~~~~~s~d~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (602)
                      ||++.+.+.+.++.+|...|++++|+|||++||+|+.|+ ++|||+.+++......                        
T Consensus         3 i~s~~~~~~~~~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~~------------------------   57 (355)
T 3vu4_A            3 LGSMITRNPIVPENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQE------------------------   57 (355)
T ss_dssp             ----------------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEEE------------------------
T ss_pred             cccccccCCccccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeeee------------------------
Confidence            677778888888899999999999999999999998776 7899988776543211                        


Q ss_pred             ccccccccCCcceEeeCCCcceEEEEEcCCCCEE-EEeeCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCc
Q psy12697        204 VDASIEIPQSKATKLIGHESEVFICAWNPVKDFL-ASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKD  282 (602)
Q Consensus       204 ~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l-~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  282 (602)
                                        ...+..+++.++++.+ ++++.|++|++||+.+++                           
T Consensus        58 ------------------~~~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~~---------------------------   92 (355)
T 3vu4_A           58 ------------------MRHLSKVRMLHRTNYVAFVTGVKEVVHIWDDVKKQ---------------------------   92 (355)
T ss_dssp             ------------------CSCCCEEEECTTSSEEEEECSSTTEEEEEETTTTE---------------------------
T ss_pred             ------------------cCCeEEEEEcCCCCEEEEEECCccEEEEEECCCCc---------------------------
Confidence                              1135556666666655 345566677777765431                           


Q ss_pred             eeEEeeCCCCCeEEEEeCCCeEEEEcCCCcceeecccccCCeEEEEEccCCCEEEEEecCCcEEEEeCCCC-ceeEEeee
Q psy12697        283 VTSLDWNNNGSFLATGSYDGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASG-QCEQQFSF  361 (602)
Q Consensus       283 i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~~-~~~~~~~~  361 (602)
                                                    ....+ .+...|.+++|+++.  ++++ .++.|++||+.++ +.+..+..
T Consensus        93 ------------------------------~~~~~-~~~~~v~~v~~~~~~--~~~~-~~~~i~i~d~~~~~~~~~~~~~  138 (355)
T 3vu4_A           93 ------------------------------DVSRI-KVDAPVKDLFLSREF--IVVS-YGDVISVFKFGNPWKRITDDIR  138 (355)
T ss_dssp             ------------------------------EEEEE-ECSSCEEEEEECSSE--EEEE-ETTEEEEEESSTTCCBSSCCEE
T ss_pred             ------------------------------EEEEE-ECCCceEEEEEcCCE--EEEE-EcCEEEEEECCCCceeeEEecc
Confidence                                          11122 144578899998763  4444 4789999999988 66665554


Q ss_pred             ccCCeeeeeccCCCeEEE--eeCCCeEEEEEcCCCc---------------e-eeEeccCCCCeEEEEECCCCCEEEEEE
Q psy12697        362 HSAPALDVDWQSNTSFAS--CSTDQHIHVCKLHSDK---------------P-VKSFEGHTNEVNAIKWDPQGLLLASCS  423 (602)
Q Consensus       362 ~~~~~~~~~~~~~~~~~~--~~~~~~i~i~d~~~~~---------------~-~~~~~~~~~~i~~~~~~~~~~~l~~~~  423 (602)
                         +...+++++ ..+++  ++.+|.|++||+.+++               + +..+.+|...|++++|+|+|++|++|+
T Consensus       139 ---~~~~~~~s~-~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s  214 (355)
T 3vu4_A          139 ---FGGVCEFSN-GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCS  214 (355)
T ss_dssp             ---EEEEEEEET-TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred             ---CCceEEEEc-cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEe
Confidence               333344455 55555  6889999999998865               2 788899999999999999999999999


Q ss_pred             CCCe-EEEEeCCCCeeeEeeccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCCC
Q psy12697        424 DDMT-LKIWSLDKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDK  502 (602)
Q Consensus       424 ~dg~-i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg  502 (602)
                      .|++ |++||+++++++..+..                                ..|...|.+++|+|+|++|++++.|+
T Consensus       215 ~d~~~v~iwd~~~~~~~~~~~~--------------------------------g~h~~~v~~~~~s~~~~~l~s~s~d~  262 (355)
T 3vu4_A          215 QDGTIIRVFKTEDGVLVREFRR--------------------------------GLDRADVVDMKWSTDGSKLAVVSDKW  262 (355)
T ss_dssp             TTCSEEEEEETTTCCEEEEEEC--------------------------------TTCCSCEEEEEECTTSCEEEEEETTC
T ss_pred             CCCCEEEEEECCCCcEEEEEEc--------------------------------CCCCCcEEEEEECCCCCEEEEEECCC
Confidence            9998 99999999988877651                                01556677777888999999999999


Q ss_pred             eEEEEeCCCCcee--eeec---------------------ccCCCeeEeeecCCc-eEEEeeCCCcEEEeecCCC
Q psy12697        503 TTIIWDAASGQCE--QQFS---------------------FHSAPALDVDWQSNT-SFASCSTDQHIHVCKLHSD  553 (602)
Q Consensus       503 ~i~iwd~~~~~~~--~~~~---------------------~~~~~v~~~~~s~~~-~l~~~~~d~~i~iw~~~~~  553 (602)
                      +|++||+..+...  ..+.                     .+..+...++|++|+ .+++++.||.+++|++..+
T Consensus       263 ~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~~  337 (355)
T 3vu4_A          263 TLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWISESSLVVVWPHTRMIETFKVVFD  337 (355)
T ss_dssp             EEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEESSSSEEEEEETTTTEEEEEEEEEE
T ss_pred             EEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCCCCceEEEEeCCCCEEEEEeCCCeEEEEEEEcC
Confidence            9999999765321  1111                     012234678999999 9999999999999997543

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=100.00  E-value=1.3e-32  Score=303.31  Aligned_cols=442  Identities=12%  Similarity=0.083  Sum_probs=319.5

Q ss_pred             cceeeeecccceeeeeeeccCCceEEEEECCCCCeEEEeeCC------ceEEEEecCCceeEEEeec-cCce-------E
Q psy12697        120 LTLPLWDVERGECLNTLTRHTEPVYSVAFSPDGKFLASGSFD------KCVHIWSARTGQLVHSYKG-TGGI-------F  185 (602)
Q Consensus       120 ~~i~vwd~~~~~~~~~l~~h~~~V~~~~~s~d~~~l~s~~~d------~~v~iwd~~~~~~~~~~~~-~~~~-------~  185 (602)
                      ..|.+||+.+++ .+.+.+|...|.+++|||||++||+++.+      ..|.+||+.+++. ..+.. ...+       .
T Consensus        33 ~~l~~~~~~gg~-~~~lt~~~~~v~~~~~SPDG~~la~~s~~~~~~~~~~i~~~d~~~g~~-~~lt~~~~~~~~~~~~~~  110 (1045)
T 1k32_A           33 DDLWEHDLKSGS-TRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEI-KRITYFSGKSTGRRMFTD  110 (1045)
T ss_dssp             TEEEEEETTTCC-EEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEE-EECCCCCEEEETTEECSE
T ss_pred             CcEEEEECCCCc-EEEeeeCCCcccCeEECCCCCEEEEEEeeccCCCCCeEEEEECCCCCe-EEcccCCCcccccccccc
Confidence            479999998776 56788899999999999999999988643      4899999998874 44443 3345       7


Q ss_pred             EEEeCCCCCCCCCCCCc----c--cccccccc------------------------------------------------
Q psy12697        186 EVCWNSRGTPPNPPESM----E--VDASIEIP------------------------------------------------  211 (602)
Q Consensus       186 ~~~~~~~~~~~~~~~~~----~--~~~~~~~~------------------------------------------------  211 (602)
                      .++|+|+|..+......    .  ....+...                                                
T Consensus       111 ~~~~SpDg~ll~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~spG~l~~~~~~~~~~~~~~~~g~~~~~lw~~  190 (1045)
T 1k32_A          111 VAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPLNLGPATHILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIE  190 (1045)
T ss_dssp             EEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEECCSCSCSEEEEETTEEEEEESCSCCTTSTTCCSTTCCEEEEE
T ss_pred             cccCCCCCEEEEEECCcCCCcccceEEEEECCCCCeEEecCCCcceeeeCCCEEEEeccCCCccccccccCCCcCCEEEE
Confidence            89999999732221110    0  00000000                                                


Q ss_pred             --CCcceEeeCCCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEeeC
Q psy12697        212 --QSKATKLIGHESEVFICAWNPVKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWN  289 (602)
Q Consensus       212 --~~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  289 (602)
                        ......+.+|...+.++.|+++ .++++++.|+.+.+|.+.......    ...            .....+...+|+
T Consensus       191 ~~~~~~~~l~~~~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~~~----~~l------------~~~~~~~~~~~S  253 (1045)
T 1k32_A          191 VNSGAFKKIVDMSTHVSSPVIVGH-RIYFITDIDGFGQIYSTDLDGKDL----RKH------------TSFTDYYPRHLN  253 (1045)
T ss_dssp             EETTEEEEEECCSSCCEEEEEETT-EEEEEECTTSSCEEEEEETTSCSC----EEC------------CCCCSSCEEEEE
T ss_pred             CCCCCeEECcCCCCcccceEEeCC-EEEEEEeccCceEEEEEeCCCCcc----eEe------------cCCCCcceeeEc
Confidence              0122344678888999999988 666777888999999876422110    000            011346677999


Q ss_pred             CCCCeEEEEeCCCeEEEEcCCCcceeeccc-----------ccCCeEEEEEc-cCCCEEEEEecCCcEEEEeCCCCceeE
Q psy12697        290 NNGSFLATGSYDGYARIWTSDGSLKSTLGQ-----------HKGPIFALKWN-KRGNYILSAGVDKTTIIWDAASGQCEQ  357 (602)
Q Consensus       290 ~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~-----------~~~~i~~~~~~-~~~~~l~~~~~dg~i~~wd~~~~~~~~  357 (602)
                      |+|+.++.+ .++.|.+|+.....+..+..           |...+.+++|+ |+|++|++++ ++.+.+|++..++...
T Consensus       254 pDG~~la~~-~~~~i~~~d~~~~~l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~~  331 (1045)
T 1k32_A          254 TDGRRILFS-KGGSIYIFNPDTEKIEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLK  331 (1045)
T ss_dssp             ESSSCEEEE-ETTEEEEECTTTCCEEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBEEE
T ss_pred             CCCCEEEEE-eCCEEEEecCCceEeeeeccCcccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCceEE
Confidence            999999887 58999999986555544443           34468999999 9999999887 8899999998876543


Q ss_pred             EeeeccC-CeeeeeccCCC-eEEEeeCCCeEE-EEEcCCCceeeEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEeCC
Q psy12697        358 QFSFHSA-PALDVDWQSNT-SFASCSTDQHIH-VCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLD  434 (602)
Q Consensus       358 ~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~i~-i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~  434 (602)
                       +..+.. .+..+.|+ ++ .++.++.++.+. +|++.+++... +.+|...+..++|+|||++|++++.++.|++||+.
T Consensus       332 -~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~~-l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~  408 (1045)
T 1k32_A          332 -VPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAEK-FEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLE  408 (1045)
T ss_dssp             -CSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCEEE-CCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred             -ccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCceE-ecCCccceeeeEECCCCCEEEEECCCCeEEEEECC
Confidence             445555 78889999 75 477777788888 99998776543 44788899999999999999999999999999999


Q ss_pred             CCeeeEeeccccccEEEEEECCCCCCCCCCCc-----------ceeeee------eeccCCccCCeEEEEEccCCCEEEE
Q psy12697        435 KDNCVHDLQAHNKEIYTIKWSPTGPETSNPNM-----------SLIFIL------KSTLGQHKGPIFALKWNKRGNYILS  497 (602)
Q Consensus       435 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-----------~~~~~~------~~~~~~~~~~v~~i~~s~~~~~l~s  497 (602)
                      +++.......|...+..++|+|++..++....           ..+..+      ...+..|...+..++|+|||++|+.
T Consensus       409 tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~~~~l~~~~~~~~~~~~spdG~~l~~  488 (1045)
T 1k32_A          409 TGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDADSKNLYY  488 (1045)
T ss_dssp             TCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECSCSSSBEEEEEECTTSCEEEE
T ss_pred             CCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCcEEEeeCCCcccCCceEcCCCCEEEE
Confidence            99888777788888999999999987644322           122222      1235567778899999999999999


Q ss_pred             EeCCCeEEEEeCCCCc-------------------------------------------eeeeecccCCCeeEeeecCCc
Q psy12697        498 AGVDKTTIIWDAASGQ-------------------------------------------CEQQFSFHSAPALDVDWQSNT  534 (602)
Q Consensus       498 ~~~dg~i~iwd~~~~~-------------------------------------------~~~~~~~~~~~v~~~~~s~~~  534 (602)
                      ++.++...+|+.....                                           .+..+..|.+.+..++++||+
T Consensus       489 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~l~~~~~~~~~~~~s~dg  568 (1045)
T 1k32_A          489 LSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESS  568 (1045)
T ss_dssp             EESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSE
T ss_pred             EecccCCcCcchhccccccccCceeEEEEeCCCCCCccccCcCccccccccccccCHhHceEEcCCCCCChhheEEcCCC
Confidence            9987777777643221                                           112333466778899999999


Q ss_pred             -eEEE-------------eeCCCcEEEeecCCCCceeeeecccccceEEEEecCCcEEEEEECCCCCeEEEeccCCeEEe
Q psy12697        535 -SFAS-------------CSTDQHIHVCKLHSDKPVKSFEGHTTGQLVHSYKGTGGIFEVCWNSRGDKVGASASDGSVFK  600 (602)
Q Consensus       535 -~l~~-------------~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~v~i  600 (602)
                       .+++             ......|.+||+.+++... +.              ..+..++|||||++|++++.++...+
T Consensus       569 ~~~~~~~~~g~~~~~~~~~~~~~~l~~~d~~~~~~~~-l~--------------~~v~~~~~S~DG~~l~~~~~~~i~~~  633 (1045)
T 1k32_A          569 ILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTE-VK--------------NNLTDLRLSADRKTVMVRKDDGKIYT  633 (1045)
T ss_dssp             EEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEEE-EE--------------EEEEEEEECTTSCEEEEEETTSCEEE
T ss_pred             eEEEEecccCcccccccccCCCceEEEEECCCCcEEE-ee--------------cCcceEEECCCCCEEEEEcCCcEEEE
Confidence             5664             1234578888887765321 11              34788999999999999988854443

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=100.00  E-value=2.7e-33  Score=273.26  Aligned_cols=273  Identities=18%  Similarity=0.292  Sum_probs=226.6

Q ss_pred             CCCCceeEEeeCCC---CCeEEEEeCCCeEEEEcCCC--cce-eecccccCCeEEEEEccCCCEEEEEecCCcEEEEeCC
Q psy12697        278 PSNKDVTSLDWNNN---GSFLATGSYDGYARIWTSDG--SLK-STLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAA  351 (602)
Q Consensus       278 ~~~~~i~~~~~~~~---~~~l~~~~~dg~i~i~~~~~--~~~-~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~  351 (602)
                      .|...|++++|+|+   |++|++|+.||.|++|++..  ... ..+..|...|.+++|+|++++|++++.||.|++||+.
T Consensus        37 ~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~  116 (368)
T 3mmy_A           37 SPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLS  116 (368)
T ss_dssp             CCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred             CCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCCCcEEEEEcC
Confidence            46789999999999   69999999999999999873  333 6778899999999999999999999999999999999


Q ss_pred             CCceeEEeeeccCCeeeeec--cCCCe-EEEeeCCCeEEEEEcCCCceeeEeccCCCCeEEEEECCCCCEEEEEECCCeE
Q psy12697        352 SGQCEQQFSFHSAPALDVDW--QSNTS-FASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTL  428 (602)
Q Consensus       352 ~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i  428 (602)
                      +++... +..|...+.++.|  ++++. +++++.|+.|++||+++++++..+..+. .+.++.+.+  ..+++++.++.+
T Consensus       117 ~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~-~~~~~~~~~--~~~~~~~~~~~i  192 (368)
T 3mmy_A          117 SNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPE-RCYCADVIY--PMAVVATAERGL  192 (368)
T ss_dssp             TTEEEE-EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSS-CEEEEEEET--TEEEEEEGGGCE
T ss_pred             CCCcee-eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCC-CceEEEecC--CeeEEEeCCCcE
Confidence            988766 5668899999999  77754 8899999999999999999988888665 566666654  488999999999


Q ss_pred             EEEeCCCCeeeEeeccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCE----EEEEeCCCeE
Q psy12697        429 KIWSLDKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNY----ILSAGVDKTT  504 (602)
Q Consensus       429 ~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~----l~s~~~dg~i  504 (602)
                      ++|+++..........                                ..+...+.++.+.++...    +++++.||.|
T Consensus       193 ~~~~~~~~~~~~~~~~--------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i  240 (368)
T 3mmy_A          193 IVYQLENQPSEFRRIE--------------------------------SPLKHQHRCVAIFKDKQNKPTGFALGSIEGRV  240 (368)
T ss_dssp             EEEECSSSCEEEEECC--------------------------------CSCSSCEEEEEEEECTTSCEEEEEEEETTSEE
T ss_pred             EEEEeccccchhhhcc--------------------------------ccccCCCceEEEcccCCCCCCeEEEecCCCcE
Confidence            9999987543322111                                012233344444444443    9999999999


Q ss_pred             EEEeCCCC---ceeeeecccCC------------CeeEeeecCCc-eEEEeeCCCcEEEeecCCCCceeeeecccccceE
Q psy12697        505 IIWDAASG---QCEQQFSFHSA------------PALDVDWQSNT-SFASCSTDQHIHVCKLHSDKPVKSFEGHTTGQLV  568 (602)
Q Consensus       505 ~iwd~~~~---~~~~~~~~~~~------------~v~~~~~s~~~-~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~  568 (602)
                      ++||+...   ..+..+..|..            +|.+++|+|++ +|++++.||.|++||+.+++++..+.+|.     
T Consensus       241 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-----  315 (368)
T 3mmy_A          241 AIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLD-----  315 (368)
T ss_dssp             EEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCS-----
T ss_pred             EEEecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecCCC-----
Confidence            99999987   55677777766            79999999999 99999999999999999888888777664     


Q ss_pred             EEEecCCcEEEEEECCCCCeEEEeccCCe
Q psy12697        569 HSYKGTGGIFEVCWNSRGDKVGASASDGS  597 (602)
Q Consensus       569 ~~~~~~~~i~~l~~spdg~~l~~~~~dg~  597 (602)
                            ..|.+++|+|||++|++++.|+.
T Consensus       316 ------~~v~~~~~s~~g~~l~~~s~d~~  338 (368)
T 3mmy_A          316 ------QPISACCFNHNGNIFAYASSYDW  338 (368)
T ss_dssp             ------SCEEEEEECTTSSCEEEEECCCS
T ss_pred             ------CCceEEEECCCCCeEEEEecccc
Confidence                  77999999999999999999874

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.6e-34  Score=306.73  Aligned_cols=261  Identities=23%  Similarity=0.374  Sum_probs=205.5

Q ss_pred             eeeeeccCCceEEEEECCCCCeEEEeeCCceEEEEecCCc--eeEEEeeccCceEEEEeCCCCCCCCCCCCccccccccc
Q psy12697        133 LNTLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTG--QLVHSYKGTGGIFEVCWNSRGTPPNPPESMEVDASIEI  210 (602)
Q Consensus       133 ~~~l~~h~~~V~~~~~s~d~~~l~s~~~d~~v~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (602)
                      +..+.+|.+.|++++|+|++++|++|+.||+|+|||+.++  +.+                                   
T Consensus         2 ~~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~-----------------------------------   46 (753)
T 3jro_A            2 VVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLI-----------------------------------   46 (753)
T ss_dssp             ------CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEE-----------------------------------
T ss_pred             eeecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccc-----------------------------------
Confidence            3567899999999999999999999999999999999843  333                                   


Q ss_pred             cCCcceEeeCCCcceEEEEEcCC--CCEEEEeeCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEee
Q psy12697        211 PQSKATKLIGHESEVFICAWNPV--KDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDW  288 (602)
Q Consensus       211 ~~~~~~~l~~h~~~v~~~~~~~~--~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  288 (602)
                           ..+.+|...|.+++|+|+  +++|++++.||.|++||+.++...      ...        ....|...|++++|
T Consensus        47 -----~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~------~~~--------~~~~h~~~V~~v~~  107 (753)
T 3jro_A           47 -----DTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWS------QIA--------VHAVHSASVNSVQW  107 (753)
T ss_dssp             -----EEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTEEE------EEE--------EECCCSSCEEEEEE
T ss_pred             -----eeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCccc------ccc--------cccCCCCCeEEEEE
Confidence                 456689999999999988  899999999999999999875310      000        11235788999999


Q ss_pred             CCC--CCeEEEEeCCCeEEEEcCCCc---ceeecccccCCeEEEEEccC-------------CCEEEEEecCCcEEEEeC
Q psy12697        289 NNN--GSFLATGSYDGYARIWTSDGS---LKSTLGQHKGPIFALKWNKR-------------GNYILSAGVDKTTIIWDA  350 (602)
Q Consensus       289 ~~~--~~~l~~~~~dg~i~i~~~~~~---~~~~~~~~~~~i~~~~~~~~-------------~~~l~~~~~dg~i~~wd~  350 (602)
                      +|+  ++.+++|+.||.|++||+...   ....+..|...|.+++|+|.             ++++++++.||.|++||+
T Consensus       108 sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~  187 (753)
T 3jro_A          108 APHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKY  187 (753)
T ss_dssp             CCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEE
T ss_pred             CCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEec
Confidence            999  999999999999999998743   44566789999999999994             677777777777777776


Q ss_pred             CCCceeEEeeeccCCeeeeeccCCCeEEEeeCCCeEEEEEcCCCceeeEeccCCCCeEEEEECCC---CCEEEEEECCCe
Q psy12697        351 ASGQCEQQFSFHSAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQ---GLLLASCSDDMT  427 (602)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~---~~~l~~~~~dg~  427 (602)
                      +++....                                     .....+.+|...|.+++|+|+   +++|++++.||.
T Consensus       188 ~~~~~~~-------------------------------------~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~  230 (753)
T 3jro_A          188 NSDAQTY-------------------------------------VLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRT  230 (753)
T ss_dssp             ETTTTEE-------------------------------------EEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSC
T ss_pred             cCCcccc-------------------------------------eeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCE
Confidence            5542111                                     234566789999999999999   999999999999


Q ss_pred             EEEEeCCCCeeeEeeccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCCCeEEEE
Q psy12697        428 LKIWSLDKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIW  507 (602)
Q Consensus       428 i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iw  507 (602)
                      |++||++++.......                             ......|...|.+++|+|+|++|++++.||.|++|
T Consensus       231 I~iwd~~~~~~~~~~~-----------------------------~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vw  281 (753)
T 3jro_A          231 CIIWTQDNEQGPWKKT-----------------------------LLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLW  281 (753)
T ss_dssp             EEEEEESSSSSCCBCC-----------------------------BSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECC
T ss_pred             EEEecCCCCCCcceeE-----------------------------EeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEE
Confidence            9999998753211100                             01223477889999999999999999999999999


Q ss_pred             eCCCCc
Q psy12697        508 DAASGQ  513 (602)
Q Consensus       508 d~~~~~  513 (602)
                      |+.++.
T Consensus       282 d~~~~~  287 (753)
T 3jro_A          282 KENLEG  287 (753)
T ss_dssp             BCCSSS
T ss_pred             ecCCCC
Confidence            998654

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=100.00  E-value=1.4e-33  Score=278.24  Aligned_cols=275  Identities=15%  Similarity=0.194  Sum_probs=227.2

Q ss_pred             ceeEEeeCCCCCeEE-EEeCCCeEEEEcCCC-----cceeecccccCCeEEEEEcc-CCCEEEEEecCCcEEEEeCCCC-
Q psy12697        282 DVTSLDWNNNGSFLA-TGSYDGYARIWTSDG-----SLKSTLGQHKGPIFALKWNK-RGNYILSAGVDKTTIIWDAASG-  353 (602)
Q Consensus       282 ~i~~~~~~~~~~~l~-~~~~dg~i~i~~~~~-----~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~~wd~~~~-  353 (602)
                      ....++++|+...++ +++.+|.|++|++..     .....+.+|...|.+++|+| ++++|++++.||.|++||+.++ 
T Consensus        36 ~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~  115 (402)
T 2aq5_A           36 DSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGG  115 (402)
T ss_dssp             SSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTC
T ss_pred             CCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCC
Confidence            345678888765444 478899999999753     24456778999999999999 9999999999999999999988 


Q ss_pred             ------ceeEEeeeccCCeeeeeccCCC--eEEEeeCCCeEEEEEcCCCceeeEe--ccCCCCeEEEEECCCCCEEEEEE
Q psy12697        354 ------QCEQQFSFHSAPALDVDWQSNT--SFASCSTDQHIHVCKLHSDKPVKSF--EGHTNEVNAIKWDPQGLLLASCS  423 (602)
Q Consensus       354 ------~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~i~i~d~~~~~~~~~~--~~~~~~i~~~~~~~~~~~l~~~~  423 (602)
                            +.+..+..|...+.+++|+|++  .+++++.|+.|++||+.+++.+..+  .+|...|.+++|+|++++|++++
T Consensus       116 ~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  195 (402)
T 2aq5_A          116 LVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSC  195 (402)
T ss_dssp             CSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEE
T ss_pred             CccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEe
Confidence                  6678888999999999999984  6899999999999999999999999  88999999999999999999999


Q ss_pred             CCCeEEEEeCCCCeeeEee-ccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEE---e
Q psy12697        424 DDMTLKIWSLDKDNCVHDL-QAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSA---G  499 (602)
Q Consensus       424 ~dg~i~iwd~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~---~  499 (602)
                      .||.|++||+++++.+..+ ..|..                                 ..+.++.|+|++++|++|   +
T Consensus       196 ~d~~i~iwd~~~~~~~~~~~~~~~~---------------------------------~~~~~~~~~~~~~~l~~g~~~~  242 (402)
T 2aq5_A          196 RDKRVRVIEPRKGTVVAEKDRPHEG---------------------------------TRPVHAVFVSEGKILTTGFSRM  242 (402)
T ss_dssp             TTSEEEEEETTTTEEEEEEECSSCS---------------------------------SSCCEEEECSTTEEEEEEECTT
T ss_pred             cCCcEEEEeCCCCceeeeeccCCCC---------------------------------CcceEEEEcCCCcEEEEeccCC
Confidence            9999999999998877766 33322                                 236778888899999999   7


Q ss_pred             CCCeEEEEeCCCCce-eeeec-ccCCCeeEeeecCCc-eEE-EeeCCCcEEEeecCCCCc-eeeeecccccceEEEEecC
Q psy12697        500 VDKTTIIWDAASGQC-EQQFS-FHSAPALDVDWQSNT-SFA-SCSTDQHIHVCKLHSDKP-VKSFEGHTTGQLVHSYKGT  574 (602)
Q Consensus       500 ~dg~i~iwd~~~~~~-~~~~~-~~~~~v~~~~~s~~~-~l~-~~~~d~~i~iw~~~~~~~-~~~~~~~~~~~~~~~~~~~  574 (602)
                      .|+.|++||+.+++. +.... .|...+.+++|+|++ .|+ +++.|+.|++||+.++++ +..+..+.         ..
T Consensus       243 ~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~---------~~  313 (402)
T 2aq5_A          243 SERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFS---------SK  313 (402)
T ss_dssp             CCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEEC---------CS
T ss_pred             CCceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccc---------cC
Confidence            899999999998765 33332 467789999999999 665 555799999999988775 44444332         34


Q ss_pred             CcEEEEEECCCCCeEEEeccCCeEEe
Q psy12697        575 GGIFEVCWNSRGDKVGASASDGSVFK  600 (602)
Q Consensus       575 ~~i~~l~~spdg~~l~~~~~dg~v~i  600 (602)
                      ..|.+++|+|++.++++  .++.+++
T Consensus       314 ~~v~~~~~sp~~~~~~s--~~~~~~~  337 (402)
T 2aq5_A          314 ESQRGMGYMPKRGLEVN--KCEIARF  337 (402)
T ss_dssp             SCCSEEEECCGGGSCGG--GTEEEEE
T ss_pred             CcccceEEeccccccee--cceeEEE
Confidence            78999999999998875  4445554

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.4e-33  Score=273.75  Aligned_cols=263  Identities=22%  Similarity=0.323  Sum_probs=208.4

Q ss_pred             cceeecccccCCeEEEEEccCCCEEEEEecCCcEEEEeCC--CCceeEEeeeccCCeeeeeccCC---CeEEEeeCCCeE
Q psy12697        312 SLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAA--SGQCEQQFSFHSAPALDVDWQSN---TSFASCSTDQHI  386 (602)
Q Consensus       312 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~--~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~i  386 (602)
                      .....+.+|...|.+++|+|++++|++++.||.|++||+.  +++....+..|...+.++.|+++   ..+++++.||.|
T Consensus         2 ~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v   81 (379)
T 3jrp_A            2 SMVVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKV   81 (379)
T ss_dssp             ---CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCE
T ss_pred             CccEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEE
Confidence            4556778999999999999999999999999999999998  55677788889999999999754   679999999999


Q ss_pred             EEEEcCCCc--eeeEeccCCCCeEEEEECCC--CCEEEEEECCCeEEEEeCCCCee--eEeeccccccEEEEEECCCCCC
Q psy12697        387 HVCKLHSDK--PVKSFEGHTNEVNAIKWDPQ--GLLLASCSDDMTLKIWSLDKDNC--VHDLQAHNKEIYTIKWSPTGPE  460 (602)
Q Consensus       387 ~i~d~~~~~--~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~--~~~~~~~~~~i~~~~~~~~~~~  460 (602)
                      ++||+.+++  .+..+..|...|.+++|+|+  +.+|++++.||.|++||+++...  ...+..|...+.+++|+|....
T Consensus        82 ~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  161 (379)
T 3jrp_A           82 LIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIE  161 (379)
T ss_dssp             EEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC--
T ss_pred             EEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCcccc
Confidence            999999987  77888889999999999999  99999999999999999987632  3334455555555555543210


Q ss_pred             CCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCc----eeeeecccCCCeeEeeecCC---
Q psy12697        461 TSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQ----CEQQFSFHSAPALDVDWQSN---  533 (602)
Q Consensus       461 ~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~~~~~----~~~~~~~~~~~v~~~~~s~~---  533 (602)
                      ..                     ......+++++|++++.||.|++||+.++.    ....+.+|...|.+++|+|+   
T Consensus       162 ~~---------------------~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~  220 (379)
T 3jrp_A          162 ED---------------------GEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLL  220 (379)
T ss_dssp             -----------------------------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSS
T ss_pred             cc---------------------ccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCC
Confidence            00                     001112378999999999999999998764    44677889999999999999   


Q ss_pred             c-eEEEeeCCCcEEEeecCCCCceeeeecccccceEEEEecCCcEEEEEECCCCCeEEEeccCCeEEee
Q psy12697        534 T-SFASCSTDQHIHVCKLHSDKPVKSFEGHTTGQLVHSYKGTGGIFEVCWNSRGDKVGASASDGSVFKN  601 (602)
Q Consensus       534 ~-~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~v~i~  601 (602)
                      + .|++++.||.|++||+.++..........      .......|.+++|+|+|++|++++.||.|+|.
T Consensus       221 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~------~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw  283 (379)
T 3jrp_A          221 RSYLASVSQDRTCIIWTQDNEQGPWKKTLLK------EEKFPDVLWRASWSLSGNVLALSGGDNKVTLW  283 (379)
T ss_dssp             SEEEEEEETTSCEEEEEESSTTSCCEEEESS------SSCCSSCEEEEEECSSSCCEEEEESSSSEEEE
T ss_pred             CCeEEEEeCCCEEEEEeCCCCCccceeeeec------cccCCCcEEEEEEcCCCCEEEEecCCCcEEEE
Confidence            8 99999999999999998764221111000      01124779999999999999999999999874

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=100.00  E-value=3.8e-33  Score=275.22  Aligned_cols=283  Identities=17%  Similarity=0.263  Sum_probs=231.2

Q ss_pred             eEEEEEcCCCCEE-EEeeCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEeeCC-CCCeEEEEeCCC
Q psy12697        225 VFICAWNPVKDFL-ASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNN-NGSFLATGSYDG  302 (602)
Q Consensus       225 v~~~~~~~~~~~l-~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg  302 (602)
                      ...++++|+...+ ++++.||.|++|++........            .......|...|++++|+| ++++|++|+.||
T Consensus        37 ~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~------------~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg  104 (402)
T 2aq5_A           37 SGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDK------------NVPLVCGHTAPVLDIAWCPHNDNVIASGSEDC  104 (402)
T ss_dssp             SCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCT------------TCCCBCCCSSCEEEEEECTTCTTEEEEEETTS
T ss_pred             CCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCC------------CCceEecCCCCEEEEEeCCCCCCEEEEEeCCC
Confidence            3457888887544 4578899999999965422110            0112234678999999999 999999999999


Q ss_pred             eEEEEcCCC--------cceeecccccCCeEEEEEccCC-CEEEEEecCCcEEEEeCCCCceeEEe--eeccCCeeeeec
Q psy12697        303 YARIWTSDG--------SLKSTLGQHKGPIFALKWNKRG-NYILSAGVDKTTIIWDAASGQCEQQF--SFHSAPALDVDW  371 (602)
Q Consensus       303 ~i~i~~~~~--------~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~~wd~~~~~~~~~~--~~~~~~~~~~~~  371 (602)
                      .|++|++..        .....+.+|...|.+++|+|++ ++|++++.||.|++||+++++....+  ..|...+.+++|
T Consensus       105 ~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~  184 (402)
T 2aq5_A          105 TVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDW  184 (402)
T ss_dssp             EEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEE
T ss_pred             eEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEE
Confidence            999999874        4567788899999999999998 69999999999999999999999888  789999999999


Q ss_pred             cCCC-eEEEeeCCCeEEEEEcCCCceeeEe-ccCCCC-eEEEEECCCCCEEEEE---ECCCeEEEEeCCCCee-eEeecc
Q psy12697        372 QSNT-SFASCSTDQHIHVCKLHSDKPVKSF-EGHTNE-VNAIKWDPQGLLLASC---SDDMTLKIWSLDKDNC-VHDLQA  444 (602)
Q Consensus       372 ~~~~-~~~~~~~~~~i~i~d~~~~~~~~~~-~~~~~~-i~~~~~~~~~~~l~~~---~~dg~i~iwd~~~~~~-~~~~~~  444 (602)
                      +|++ .+++++.|+.|++||+++++.+..+ .+|.+. +.+++|+|++++|++|   +.|+.|++||+++++. +.... 
T Consensus       185 ~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~-  263 (402)
T 2aq5_A          185 SRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQE-  263 (402)
T ss_dssp             CTTSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEE-
T ss_pred             CCCCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEe-
Confidence            9875 5889999999999999999999888 788876 8999999999999999   7899999999987543 11111 


Q ss_pred             ccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEE-EeCCCeEEEEeCCCCce-eeeecc--
Q psy12697        445 HNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILS-AGVDKTTIIWDAASGQC-EQQFSF--  520 (602)
Q Consensus       445 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s-~~~dg~i~iwd~~~~~~-~~~~~~--  520 (602)
                                                      ..+...+.+++|+|++++|++ ++.||.|++||+.+++. +..+..  
T Consensus       264 --------------------------------~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~  311 (402)
T 2aq5_A          264 --------------------------------LDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFS  311 (402)
T ss_dssp             --------------------------------CCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEEC
T ss_pred             --------------------------------ccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccc
Confidence                                            124567888999999999975 55799999999998884 444444  


Q ss_pred             cCCCeeEeeecCCc-eEEEeeCCCcEEEeecCCCC
Q psy12697        521 HSAPALDVDWQSNT-SFASCSTDQHIHVCKLHSDK  554 (602)
Q Consensus       521 ~~~~v~~~~~s~~~-~l~~~~~d~~i~iw~~~~~~  554 (602)
                      |..+|.+++|+|++ .+++  .++.+++|++.+++
T Consensus       312 ~~~~v~~~~~sp~~~~~~s--~~~~~~~~~l~~~~  344 (402)
T 2aq5_A          312 SKESQRGMGYMPKRGLEVN--KCEIARFYKLHERK  344 (402)
T ss_dssp             CSSCCSEEEECCGGGSCGG--GTEEEEEEEEETTE
T ss_pred             cCCcccceEEeccccccee--cceeEEEEEcCCCc
Confidence            45899999999999 5543  56799999998754

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.9e-32  Score=271.99  Aligned_cols=265  Identities=13%  Similarity=0.075  Sum_probs=208.2

Q ss_pred             CCCCceeEEeeCCCCCeE-EEEeCCCeEEEEcCC---Ccceeecc--cccCCeEEEEEccCCCEEEEEecCCcEEEEeCC
Q psy12697        278 PSNKDVTSLDWNNNGSFL-ATGSYDGYARIWTSD---GSLKSTLG--QHKGPIFALKWNKRGNYILSAGVDKTTIIWDAA  351 (602)
Q Consensus       278 ~~~~~i~~~~~~~~~~~l-~~~~~dg~i~i~~~~---~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~  351 (602)
                      ++...|.+++|+|++++| ++++.||.|++|++.   +.....+.  .|...|.+++|+|++++|++++.+|.+++|++.
T Consensus       100 ~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~~~  179 (450)
T 2vdu_B          100 PIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADKFGDVYSIDIN  179 (450)
T ss_dssp             CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred             ccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEEeCCCcEEEEecC
Confidence            456789999999999996 889999999999976   45555554  567889999999999999999999999999998


Q ss_pred             CCceeE----EeeeccCCeeeeeccCC---C-eEEEeeCCCeEEEEEcCCCceeeE-eccCCCCeEEEEECCCCCEEEEE
Q psy12697        352 SGQCEQ----QFSFHSAPALDVDWQSN---T-SFASCSTDQHIHVCKLHSDKPVKS-FEGHTNEVNAIKWDPQGLLLASC  422 (602)
Q Consensus       352 ~~~~~~----~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~i~i~d~~~~~~~~~-~~~~~~~i~~~~~~~~~~~l~~~  422 (602)
                      +++...    .+..|...+.++.|+|+   + .+++++.|+.|++||+.+++.+.. +.+|...|.+++|+ ++++|+++
T Consensus       180 ~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~s-d~~~l~s~  258 (450)
T 2vdu_B          180 SIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSICCG-KDYLLLSA  258 (450)
T ss_dssp             SCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSCEEEEEEC-STTEEEEE
T ss_pred             CcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCceEEEEEC-CCCEEEEE
Confidence            887554    77789999999999997   6 688999999999999999988877 66899999999999 99999999


Q ss_pred             ECCCeEEEEeCCCCeeeEeeccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEe-CC
Q psy12697        423 SDDMTLKIWSLDKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAG-VD  501 (602)
Q Consensus       423 ~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~-~d  501 (602)
                      +.|+.|++||+++++++..+..+.. +..+.+....        ................|.+++|+|++++|++++ .|
T Consensus       259 ~~d~~v~vwd~~~~~~~~~~~~~~~-~~~~~~~~~~--------~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d  329 (450)
T 2vdu_B          259 GGDDKIFAWDWKTGKNLSTFDYNSL-IKPYLNDQHL--------APPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEAT  329 (450)
T ss_dssp             ESSSEEEEEETTTCCEEEEEECHHH-HGGGCCTTSB--------C----------CBCCCEEEEEECSSSSEEEEEETTC
T ss_pred             eCCCeEEEEECCCCcEeeeecchhh-hhhhhhhccc--------ccccccccccccceEEEEEEEEeCCCCEEEEEECCC
Confidence            9999999999999988877754321 0000000000        000000001113456789999999999999999 89


Q ss_pred             CeEEEEeC--CCC---ceeeeecccCCCeeEeeecCCceEEEe-eC------CCcEEEeecCCC
Q psy12697        502 KTTIIWDA--ASG---QCEQQFSFHSAPALDVDWQSNTSFASC-ST------DQHIHVCKLHSD  553 (602)
Q Consensus       502 g~i~iwd~--~~~---~~~~~~~~~~~~v~~~~~s~~~~l~~~-~~------d~~i~iw~~~~~  553 (602)
                      +.|++||+  .++   +.+..+..| ..|.+++|+|++.+++. +.      +..|.+|.+...
T Consensus       330 ~~i~iw~~~~~~~~~l~~~~~~~~~-~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~~~~~~  392 (450)
T 2vdu_B          330 KCIIILEMSEKQKGDLALKQIITFP-YNVISLSAHNDEFQVTLDNKESSGVQKNFAKFIEYNLN  392 (450)
T ss_dssp             SEEEEEEECSSSTTCEEEEEEEECS-SCEEEEEEETTEEEEEECCTTCCSSCCCSEEEEEEETT
T ss_pred             CeEEEEEeccCCCCceeeccEeccC-CceEEEEecCCcEEEEEecccCCCCCCcceEEEEEEcC
Confidence            99999999  565   667778877 88999999997744444 32      556889887543

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=100.00  E-value=1.9e-33  Score=275.62  Aligned_cols=326  Identities=11%  Similarity=0.120  Sum_probs=208.7

Q ss_pred             ceEEEEE---cCCCCEEEEeeCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEeeCCCCCeEEEEeC
Q psy12697        224 EVFICAW---NPVKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFLATGSY  300 (602)
Q Consensus       224 ~v~~~~~---~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~  300 (602)
                      ..+.+.|   +|+...+++++.++.|.+|+..................       ...+..++..+.|++..        
T Consensus        17 ~p~~~~w~~~~~~~~~l~a~g~~~~i~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~--------   81 (393)
T 4gq1_A           17 RPYTTTWCSQSPSCSNLLAIGHDTGITIYCASEEQTPGSTGLTLQELF-------TIQTGLPTLHLSFSSSC--------   81 (393)
T ss_dssp             CEEEEEECTTSGGGTTEEEEEESSEEEEEEEEECCSSSCCSEEEEEEE-------EEECSSCEEEEEECTTC--------
T ss_pred             CCeEEEEeCCCCCCCCEEEEECCCCEEEEECCCCCcccccccceeeeE-------EEecCCCeeeEeecCCc--------
Confidence            4556666   34455566666788899998754432211111100000       00112334444444322        


Q ss_pred             CCeEEEEcCCCcceeecccccCCeEEEEEccCCCEEEEEecCCcEEEEeCCCCceeE-----EeeeccCCeeeeeccC--
Q psy12697        301 DGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQ-----QFSFHSAPALDVDWQS--  373 (602)
Q Consensus       301 dg~i~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~-----~~~~~~~~~~~~~~~~--  373 (602)
                                   ......|........+++++++|++++.|++|++||.++++...     .+.+|...|.+++|+|  
T Consensus        82 -------------~~~~~~~~~~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~  148 (393)
T 4gq1_A           82 -------------SYSENLHDGDGNVNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVY  148 (393)
T ss_dssp             -------------EEECC----------CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEE
T ss_pred             -------------cccccccCCCcceeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEcccc
Confidence                         11223345555666777888899999999999999999886543     3567899999999986  


Q ss_pred             -------CCeEEEeeCCCeEEEEEcCCCceeeEeccCCCCeEEEEECCCC-CEEEEEECCCeEEEEeCCCCeeeEeeccc
Q psy12697        374 -------NTSFASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQG-LLLASCSDDMTLKIWSLDKDNCVHDLQAH  445 (602)
Q Consensus       374 -------~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~  445 (602)
                             +..+++++.|++|++||+.++.++..+..|...+.+++|+|++ .+|++++.||+|++||+++++.......+
T Consensus       149 ~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~  228 (393)
T 4gq1_A          149 SADNRLAEQVIASVGDDCTLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQT  228 (393)
T ss_dssp             CTTCSEEEEEEEEEETTSEEEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC--------
T ss_pred             ccccCCCCCEEEEEECCCeEEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCccccccccc
Confidence                   3568999999999999999998888888999999999999987 48999999999999999988765554433


Q ss_pred             ccc----EEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEc-cCCCEEEEEeCCCeEEEEeCCCCceeeeecc
Q psy12697        446 NKE----IYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWN-KRGNYILSAGVDKTTIIWDAASGQCEQQFSF  520 (602)
Q Consensus       446 ~~~----i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s-~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~  520 (602)
                      ...    +......+..             ......+|...+.++.|+ ||++.|++++.|+.+++||+.+++....+..
T Consensus       229 ~~~~~~~~~s~~~~~~~-------------~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~  295 (393)
T 4gq1_A          229 ELVKNPWLLTLNTLPLV-------------NTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISD  295 (393)
T ss_dssp             --CSCCCSEEEESGGGC-------------------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-----------
T ss_pred             CCcccceEEecccccce-------------eeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEee
Confidence            221    1111111110             112234688899999987 7999999999999999999998877766665


Q ss_pred             cCCCeeEeee------------------cC--Cc-eEEEeeCCCcEEEeecCCCCceeeeecccccceEEEEecCCcEEE
Q psy12697        521 HSAPALDVDW------------------QS--NT-SFASCSTDQHIHVCKLHSDKPVKSFEGHTTGQLVHSYKGTGGIFE  579 (602)
Q Consensus       521 ~~~~v~~~~~------------------s~--~~-~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  579 (602)
                      |...+..+.+                  +|  ++ ++++|+.||.|++||+.+++++..+.++.           .+|.+
T Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~-----------~~V~s  364 (393)
T 4gq1_A          296 STMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLG-----------MPIVD  364 (393)
T ss_dssp             --------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECS-----------SCEEE
T ss_pred             ecCccccEEEccccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCC-----------CcEEE
Confidence            5554443333                  33  33 56778889999999999888776665543           78999


Q ss_pred             EEECCCCCeEEEeccCCeEEee
Q psy12697        580 VCWNSRGDKVGASASDGSVFKN  601 (602)
Q Consensus       580 l~~spdg~~l~~~~~dg~v~i~  601 (602)
                      ++|+|||++||+++++|.+.++
T Consensus       365 vafspdG~~LA~as~~Gv~lvr  386 (393)
T 4gq1_A          365 FCWHQDGSHLAIATEGSVLLTR  386 (393)
T ss_dssp             EEECTTSSEEEEEESSEEEEEE
T ss_pred             EEEcCCCCEEEEEeCCCeEEEE
Confidence            9999999999999999987765

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=100.00  E-value=1.7e-32  Score=265.48  Aligned_cols=266  Identities=17%  Similarity=0.309  Sum_probs=216.1

Q ss_pred             eecccccCCeEEEEEccCCCEEEEEecCCcEEEEeCCCC----ceeEEeeeccCCeeeeeccC---CCeEEEeeCCCeEE
Q psy12697        315 STLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASG----QCEQQFSFHSAPALDVDWQS---NTSFASCSTDQHIH  387 (602)
Q Consensus       315 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~~----~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~i~  387 (602)
                      ..+.+|...|++++|+|++++|++++.||.|++||+.++    +....+..|...+.+++|++   +..+++++.||.|+
T Consensus         5 ~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~   84 (351)
T 3f3f_A            5 PFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVK   84 (351)
T ss_dssp             CEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEE
T ss_pred             ccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEE
Confidence            356789999999999999999999999999999999876    45667788999999999998   57799999999999


Q ss_pred             EEEcCCC---------ceeeEeccCCCCeEEEEECCC--CCEEEEEECCCeEEEEeCCCCeeeEeeccccccEEEEEECC
Q psy12697        388 VCKLHSD---------KPVKSFEGHTNEVNAIKWDPQ--GLLLASCSDDMTLKIWSLDKDNCVHDLQAHNKEIYTIKWSP  456 (602)
Q Consensus       388 i~d~~~~---------~~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~  456 (602)
                      +||+.++         +++..+.+|...|.+++|+|+  +++|++++.||.|++||+++++.+..+... ..+..     
T Consensus        85 vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~-~~~~~-----  158 (351)
T 3f3f_A           85 LWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLT-SEMKV-----  158 (351)
T ss_dssp             EEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEE-EEEES-----
T ss_pred             EEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhcccccc-ccccc-----
Confidence            9999887         557888899999999999999  999999999999999999987665443311 01111     


Q ss_pred             CCCCCCCCCcceeeeeeeccCCccCCeEEEEEccC---CCEEEEEeCCCeEEEEeCCCCce--eeeecccCCCeeEeeec
Q psy12697        457 TGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKR---GNYILSAGVDKTTIIWDAASGQC--EQQFSFHSAPALDVDWQ  531 (602)
Q Consensus       457 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~---~~~l~s~~~dg~i~iwd~~~~~~--~~~~~~~~~~v~~~~~s  531 (602)
                                     .......|...+.+++|+|+   ++++++++.|+.+.+|+...++.  +..+.+|...|++++|+
T Consensus       159 ---------------~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~  223 (351)
T 3f3f_A          159 ---------------LSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWA  223 (351)
T ss_dssp             ---------------CSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEEC
T ss_pred             ---------------cccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEEC
Confidence                           11122357788999999997   99999999999999998887765  67788899999999999


Q ss_pred             CCc-----eEEEeeCCCcEEEeecCCCCceeeeec----------------------------------ccccceEEEEe
Q psy12697        532 SNT-----SFASCSTDQHIHVCKLHSDKPVKSFEG----------------------------------HTTGQLVHSYK  572 (602)
Q Consensus       532 ~~~-----~l~~~~~d~~i~iw~~~~~~~~~~~~~----------------------------------~~~~~~~~~~~  572 (602)
                      |++     .|++++.||.|++||+.++........                                  ......+..+.
T Consensus       224 p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (351)
T 3f3f_A          224 PSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHD  303 (351)
T ss_dssp             CCSSCSSEEEEEEETTSCEEEEEEEECC---------------------------------------CCSEEEEEEEEEC
T ss_pred             CCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEe
Confidence            995     799999999999999987532221110                                  11123444444


Q ss_pred             c-CCcEEEEEECCCCCeEEEeccCCeEEee
Q psy12697        573 G-TGGIFEVCWNSRGDKVGASASDGSVFKN  601 (602)
Q Consensus       573 ~-~~~i~~l~~spdg~~l~~~~~dg~v~i~  601 (602)
                      . .+.|.+++|+|++++|++++.||.|+|+
T Consensus       304 ~h~~~v~~~~~s~~~~~l~s~~~dg~v~iw  333 (351)
T 3f3f_A          304 DHNGEVWSVSWNLTGTILSSAGDDGKVRLW  333 (351)
T ss_dssp             TTSSCEEEEEECSSSCCEEEEETTSCEEEE
T ss_pred             cccccEEEEEEcCCCCEEEEecCCCcEEEE
Confidence            3 5789999999999999999999999875

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=100.00  E-value=3.9e-31  Score=260.11  Aligned_cols=307  Identities=9%  Similarity=0.084  Sum_probs=236.8

Q ss_pred             CeEEEeeCCceEEEEecCCceeEEEeeccCceEEEEeCCCCCCCCCCCCccccccccccCCcceEeeCCCcceEEEEEcC
Q psy12697        153 KFLASGSFDKCVHIWSARTGQLVHSYKGTGGIFEVCWNSRGTPPNPPESMEVDASIEIPQSKATKLIGHESEVFICAWNP  232 (602)
Q Consensus       153 ~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~  232 (602)
                      .++++++.|+.|++||+.+++.+..+.                                        +| ..+.+++|+|
T Consensus         3 ~l~vs~~~d~~v~v~d~~~~~~~~~~~----------------------------------------~~-~~~~~~~~s~   41 (391)
T 1l0q_A            3 FAYIANSESDNISVIDVTSNKVTATIP----------------------------------------VG-SNPMGAVISP   41 (391)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEEE----------------------------------------CS-SSEEEEEECT
T ss_pred             EEEEEcCCCCEEEEEECCCCeEEEEee----------------------------------------cC-CCcceEEECC
Confidence            467889999999999999998875443                                        34 3489999999


Q ss_pred             CCCEE-EEeeCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEeeCCCCCeEEEE-eCCCeEEEEcCC
Q psy12697        233 VKDFL-ASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFLATG-SYDGYARIWTSD  310 (602)
Q Consensus       233 ~~~~l-~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~i~~~~  310 (602)
                      +++++ ++++.|+.|++||+.+++...      .           ......+.+++|+|++++++++ ..++.|++||..
T Consensus        42 dg~~l~~~~~~d~~i~v~d~~~~~~~~------~-----------~~~~~~v~~~~~spdg~~l~~~~~~~~~v~v~d~~  104 (391)
T 1l0q_A           42 DGTKVYVANAHSNDVSIIDTATNNVIA------T-----------VPAGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTT  104 (391)
T ss_dssp             TSSEEEEEEGGGTEEEEEETTTTEEEE------E-----------EECSSSEEEEEECTTSSEEEEEETTTTEEEEEETT
T ss_pred             CCCEEEEECCCCCeEEEEECCCCeEEE------E-----------EECCCCccceEECCCCCEEEEEECCCCEEEEEECC
Confidence            99877 667789999999998764321      0           1123479999999999988655 467999999988


Q ss_pred             CcceeecccccCCeEEEEEccCCCEE-EEEecCCcEEEEeCCCCceeEEeeeccCCeeeeeccCCCe-E-EEeeCCCeEE
Q psy12697        311 GSLKSTLGQHKGPIFALKWNKRGNYI-LSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTS-F-ASCSTDQHIH  387 (602)
Q Consensus       311 ~~~~~~~~~~~~~i~~~~~~~~~~~l-~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~i~  387 (602)
                      .........+...+.+++|+|+++++ ++++.++.|++||+.+++....+..+ ..+..+.|++++. + ++++.++.|+
T Consensus       105 ~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~~~dg~~l~~~~~~~~~v~  183 (391)
T 1l0q_A          105 SNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVG-RSPKGIAVTPDGTKVYVANFDSMSIS  183 (391)
T ss_dssp             TTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECC-SSEEEEEECTTSSEEEEEETTTTEEE
T ss_pred             CCeEEEEEeCCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecC-CCcceEEECCCCCEEEEEeCCCCEEE
Confidence            54443333455678999999999988 67788999999999999988877765 4568899999864 4 5667889999


Q ss_pred             EEEcCCCceeeEeccCCCCeEEEEECCCCCEEEEEE---CCCeEEEEeCCCCeeeEeeccccccEEEEEECCCCCCCCCC
Q psy12697        388 VCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCS---DDMTLKIWSLDKDNCVHDLQAHNKEIYTIKWSPTGPETSNP  464 (602)
Q Consensus       388 i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  464 (602)
                      +||+.+++.+..+. +...+.+++|+|++++|++++   .++.|++||+.+++.+..+..+.                  
T Consensus       184 ~~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~------------------  244 (391)
T 1l0q_A          184 VIDTVTNSVIDTVK-VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGP------------------  244 (391)
T ss_dssp             EEETTTTEEEEEEE-CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCS------------------
T ss_pred             EEECCCCeEEEEEe-cCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEecCC------------------
Confidence            99999998877766 556799999999999999988   68999999999888776654422                  


Q ss_pred             CcceeeeeeeccCCccCCeEEEEEccCCCEE-EEEeCCCeEEEEeCCCCceeeeecccCCCee---EeeecC--------
Q psy12697        465 NMSLIFILKSTLGQHKGPIFALKWNKRGNYI-LSAGVDKTTIIWDAASGQCEQQFSFHSAPAL---DVDWQS--------  532 (602)
Q Consensus       465 ~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l-~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~---~~~~s~--------  532 (602)
                                       .+.+++|+|+|++| ++++.|+.|++||+.+++.+..+..|..+..   .+.+.|        
T Consensus       245 -----------------~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a  307 (391)
T 1l0q_A          245 -----------------DPAGIAVTPDGKKVYVALSFXNTVSVIDTATNTITATMAVGKNPYASGQFIGSIPVQPVYPSA  307 (391)
T ss_dssp             -----------------SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEECCSSCEEECSSCCCCCBC
T ss_pred             -----------------CccEEEEccCCCEEEEEcCCCCEEEEEECCCCcEEEEEECCcCCCccceeeeccccccccccc
Confidence                             34567778888877 6778899999999999999888876655421   122221        


Q ss_pred             ----C----------c-eEEEeeCCCcEEEeecCCCC
Q psy12697        533 ----N----------T-SFASCSTDQHIHVCKLHSDK  554 (602)
Q Consensus       533 ----~----------~-~l~~~~~d~~i~iw~~~~~~  554 (602)
                          +          . .+...+.|...++|++.++.
T Consensus       308 ~fs~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~g~  344 (391)
T 1l0q_A          308 DFKSNITSGYIFLSEPVQFTDLSKDATEWKWDFGDGS  344 (391)
T ss_dssp             CEEESCCSSEEETTCCEEEEECCBSCSEEEEECSSSC
T ss_pred             ccccccccccccccceEEEEeCCCCceEEEEECCCCc
Confidence                1          1 35556678889999987664

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=100.00  E-value=2e-33  Score=275.31  Aligned_cols=343  Identities=12%  Similarity=0.100  Sum_probs=213.3

Q ss_pred             EEEEE---CCCCCeEEEeeCCceEEEEecCCc----------eeEEEeeccCceEEEEeCCCCCCCCCCCCccccccccc
Q psy12697        144 YSVAF---SPDGKFLASGSFDKCVHIWSARTG----------QLVHSYKGTGGIFEVCWNSRGTPPNPPESMEVDASIEI  210 (602)
Q Consensus       144 ~~~~~---s~d~~~l~s~~~d~~v~iwd~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (602)
                      .++.|   +|++..|++++.|+.|++|+....          ..+..+....++..+.|.+..                 
T Consensus        19 ~~~~w~~~~~~~~~l~a~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------   81 (393)
T 4gq1_A           19 YTTTWCSQSPSCSNLLAIGHDTGITIYCASEEQTPGSTGLTLQELFTIQTGLPTLHLSFSSSC-----------------   81 (393)
T ss_dssp             EEEEECTTSGGGTTEEEEEESSEEEEEEEEECCSSSCCSEEEEEEEEEECSSCEEEEEECTTC-----------------
T ss_pred             eEEEEeCCCCCCCCEEEEECCCCEEEEECCCCCcccccccceeeeEEEecCCCeeeEeecCCc-----------------
Confidence            34555   445555566667888999976321          122233333444444444322                 


Q ss_pred             cCCcceEeeCCCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEeeCC
Q psy12697        211 PQSKATKLIGHESEVFICAWNPVKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNN  290 (602)
Q Consensus       211 ~~~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  290 (602)
                          ......|...+....+.+++.+|++++.|++|++||...+.....        .   .......|...|.+++|+|
T Consensus        82 ----~~~~~~~~~~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~--------~---~~~~~~gH~~~v~~v~~~p  146 (393)
T 4gq1_A           82 ----SYSENLHDGDGNVNSSPVYSLFLACVCQDNTVRLIITKNETIITQ--------H---VLGGKSGHHNFVNDIDIAD  146 (393)
T ss_dssp             ----EEECC----------CCEEEEEEEEEETTSCEEEEEEETTEEEEE--------E---EECTTTSCSSCEEEEEEEE
T ss_pred             ----cccccccCCCcceeecCCCCCEEEEEeCCCcEEEEECCCCcccee--------e---eecccCCCCCceEEEEEcc
Confidence                123334555666667777888999999999999999887642110        0   0123345789999999998


Q ss_pred             --------CCCeEEEEeCCCeEEEEcCC-CcceeecccccCCeEEEEEccCCC-EEEEEecCCcEEEEeCCCCceeEEee
Q psy12697        291 --------NGSFLATGSYDGYARIWTSD-GSLKSTLGQHKGPIFALKWNKRGN-YILSAGVDKTTIIWDAASGQCEQQFS  360 (602)
Q Consensus       291 --------~~~~l~~~~~dg~i~i~~~~-~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~~wd~~~~~~~~~~~  360 (602)
                              ++++||+|+.|++|++||+. +.....+..|...+.+++|+|++. +|++++.|++|++||+++++......
T Consensus       147 ~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~  226 (393)
T 4gq1_A          147 VYSADNRLAEQVIASVGDDCTLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENS  226 (393)
T ss_dssp             EECTTCSEEEEEEEEEETTSEEEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC------
T ss_pred             ccccccCCCCCEEEEEECCCeEEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCccccccc
Confidence                    78999999999999999975 556667778999999999999874 79999999999999999887665544


Q ss_pred             eccCCeeeeeccCCCeEEEeeCCCeEEEEEcCCCceeeEeccCCCCeEEEEEC-CCCCEEEEEECCCeEEEEeCCCCeee
Q psy12697        361 FHSAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWD-PQGLLLASCSDDMTLKIWSLDKDNCV  439 (602)
Q Consensus       361 ~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~-~~~~~l~~~~~dg~i~iwd~~~~~~~  439 (602)
                      .+........+.                ++...........+|...+.++.|+ |+++.|++++.|+.+++||+..++..
T Consensus       227 ~~~~~~~~~~~s----------------~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~  290 (393)
T 4gq1_A          227 QTELVKNPWLLT----------------LNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDY  290 (393)
T ss_dssp             ----CSCCCSEE----------------EESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC------
T ss_pred             ccCCcccceEEe----------------cccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCC
Confidence            332221111110                0111111122335688889999987 79999999999999999999998888


Q ss_pred             EeeccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEcc-CCCEEEEEeCCCeEEEEeCCCCceeeee
Q psy12697        440 HDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNK-RGNYILSAGVDKTTIIWDAASGQCEQQF  518 (602)
Q Consensus       440 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~  518 (602)
                      ..+..+...+..+.+.|+....               ..+...+..+.+.+ ++.++++|+.||.|++||+.++++...+
T Consensus       291 ~~l~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~  355 (393)
T 4gq1_A          291 NEISDSTMKLGPKNLLPNVQGI---------------SLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIP  355 (393)
T ss_dssp             -------------CCSCSEEEE---------------CSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEE
T ss_pred             ceEeeecCccccEEEccccccc---------------cccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEe
Confidence            8888888888877777764321               11222333333333 4456778889999999999999999888


Q ss_pred             cccCCCeeEeeecCCc-eEEEeeCCCcEEEeec
Q psy12697        519 SFHSAPALDVDWQSNT-SFASCSTDQHIHVCKL  550 (602)
Q Consensus       519 ~~~~~~v~~~~~s~~~-~l~~~~~d~~i~iw~~  550 (602)
                      ..|..+|.+++|+||| +||+++.+| +.+|++
T Consensus       356 ~~~~~~V~svafspdG~~LA~as~~G-v~lvrL  387 (393)
T 4gq1_A          356 IQLGMPIVDFCWHQDGSHLAIATEGS-VLLTRL  387 (393)
T ss_dssp             EECSSCEEEEEECTTSSEEEEEESSE-EEEEEE
T ss_pred             cCCCCcEEEEEEcCCCCEEEEEeCCC-eEEEEE
Confidence            8999999999999999 888887665 666664

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=100.00  E-value=6.6e-31  Score=258.49  Aligned_cols=333  Identities=14%  Similarity=0.117  Sum_probs=251.0

Q ss_pred             eccceeeeecccceeeeeeeccCCceEEEEECCCCCeE-EEeeCCceEEEEecCCceeEEEeeccCceEEEEeCCCCCCC
Q psy12697        118 HRLTLPLWDVERGECLNTLTRHTEPVYSVAFSPDGKFL-ASGSFDKCVHIWSARTGQLVHSYKGTGGIFEVCWNSRGTPP  196 (602)
Q Consensus       118 ~~~~i~vwd~~~~~~~~~l~~h~~~V~~~~~s~d~~~l-~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (602)
                      .+++|++||+.+++.+..+.+|.. +.+++|+|++++| ++++.|+.|++||+.+++.+..+.                 
T Consensus        10 ~d~~v~v~d~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~-----------------   71 (391)
T 1l0q_A           10 ESDNISVIDVTSNKVTATIPVGSN-PMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVP-----------------   71 (391)
T ss_dssp             TTTEEEEEETTTTEEEEEEECSSS-EEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-----------------
T ss_pred             CCCEEEEEECCCCeEEEEeecCCC-cceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEE-----------------
Confidence            357899999999999999998865 8999999999977 677799999999999998875543                 


Q ss_pred             CCCCCccccccccccCCcceEeeCCCcceEEEEEcCCCCEEEEe-eCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCc
Q psy12697        197 NPPESMEVDASIEIPQSKATKLIGHESEVFICAWNPVKDFLASG-SGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGT  275 (602)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~s~-~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (602)
                                              +...+.+++|+|++++|+++ +.++.|++||+.+++...      ..         
T Consensus        72 ------------------------~~~~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~------~~---------  112 (391)
T 1l0q_A           72 ------------------------AGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAG------TV---------  112 (391)
T ss_dssp             ------------------------CSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEE------EE---------
T ss_pred             ------------------------CCCCccceEECCCCCEEEEEECCCCEEEEEECCCCeEEE------EE---------
Confidence                                    22389999999999987654 567999999998764311      10         


Q ss_pred             ccCCCCceeEEeeCCCCCeE-EEEeCCCeEEEEcCCC-cceeecccccCCeEEEEEccCCCEE-EEEecCCcEEEEeCCC
Q psy12697        276 EVPSNKDVTSLDWNNNGSFL-ATGSYDGYARIWTSDG-SLKSTLGQHKGPIFALKWNKRGNYI-LSAGVDKTTIIWDAAS  352 (602)
Q Consensus       276 ~~~~~~~i~~~~~~~~~~~l-~~~~~dg~i~i~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l-~~~~~dg~i~~wd~~~  352 (602)
                        .+...+.+++|+|+++.+ ++++.++.|++||... +....+.. ...+.+++|+|+++++ ++++.++.|++||+++
T Consensus       113 --~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~  189 (391)
T 1l0q_A          113 --KTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSV-GRSPKGIAVTPDGTKVYVANFDSMSISVIDTVT  189 (391)
T ss_dssp             --ECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC-CSSEEEEEECTTSSEEEEEETTTTEEEEEETTT
T ss_pred             --eCCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEec-CCCcceEEECCCCCEEEEEeCCCCEEEEEECCC
Confidence              123568999999999977 6778899999999864 44444444 4567999999999988 5677889999999999


Q ss_pred             CceeEEeeeccCCeeeeeccCCCe-EEEee---CCCeEEEEEcCCCceeeEeccCCCCeEEEEECCCCCEE-EEEECCCe
Q psy12697        353 GQCEQQFSFHSAPALDVDWQSNTS-FASCS---TDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLL-ASCSDDMT  427 (602)
Q Consensus       353 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~---~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l-~~~~~dg~  427 (602)
                      ++....+.. ...+..++|++++. +++++   .++.|++||+.+++.+..+..|. .+.+++|+|++++| ++++.|+.
T Consensus       190 ~~~~~~~~~-~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~s~~~d~~  267 (391)
T 1l0q_A          190 NSVIDTVKV-EAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGP-DPAGIAVTPDGKKVYVALSFXNT  267 (391)
T ss_dssp             TEEEEEEEC-SSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCS-SEEEEEECTTSSEEEEEETTTTE
T ss_pred             CeEEEEEec-CCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEecCC-CccEEEEccCCCEEEEEcCCCCE
Confidence            988777654 45778899999864 56665   68999999999999888888765 57899999999987 56688999


Q ss_pred             EEEEeCCCCeeeEeeccccccEE---EEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEc------cCC--CEEE
Q psy12697        428 LKIWSLDKDNCVHDLQAHNKEIY---TIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWN------KRG--NYIL  496 (602)
Q Consensus       428 i~iwd~~~~~~~~~~~~~~~~i~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s------~~~--~~l~  496 (602)
                      |++||+.+++.+..+..+..+..   .+.+.|++...                    ++......      |..  ..+.
T Consensus       268 v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~a~fs~~~~~~~~~~~~~~~~~  327 (391)
T 1l0q_A          268 VSVIDTATNTITATMAVGKNPYASGQFIGSIPVQPVY--------------------PSADFKSNITSGYIFLSEPVQFT  327 (391)
T ss_dssp             EEEEETTTTEEEEEEECSSSEECCSSCEEECSSCCCC--------------------CBCCEEESCCSSEEETTCCEEEE
T ss_pred             EEEEECCCCcEEEEEECCcCCCccceeeecccccccc--------------------cccccccccccccccccceEEEE
Confidence            99999999999888876654432   23444433221                    11111111      111  3456


Q ss_pred             EEeCCCeEEEEeCCCCceeeeecccCCCeeEeeecCCc-eEEE
Q psy12697        497 SAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNT-SFAS  538 (602)
Q Consensus       497 s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~-~l~~  538 (602)
                      ..+.|..+++||+.++...    .+..+  ...|+++| +.++
T Consensus       328 ~~~~~~~~~~W~~~~g~~~----~~~~~--~~~~~~~g~y~~~  364 (391)
T 1l0q_A          328 DLSKDATEWKWDFGDGSSS----KKQNP--THTYSETGIYTVR  364 (391)
T ss_dssp             ECCBSCSEEEEECSSSCEE----CSSSC--EECCSSCEEEEEE
T ss_pred             eCCCCceEEEEECCCCccc----CcCCC--eEEeCCCceEEEE
Confidence            6677899999999887642    12233  46799999 5554

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=100.00  E-value=8.5e-31  Score=261.50  Aligned_cols=272  Identities=10%  Similarity=0.042  Sum_probs=225.6

Q ss_pred             CceeEEeeCCCCCeEEEEeCCCeEEEEcCC-Cccee-----ecccccCCeEEEEEccCCCEEEEEecCCcEEEEeCCCCc
Q psy12697        281 KDVTSLDWNNNGSFLATGSYDGYARIWTSD-GSLKS-----TLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQ  354 (602)
Q Consensus       281 ~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~-~~~~~-----~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~  354 (602)
                      ..+.+++|+|++.++++++.++.|++||.. ++...     .+..|...|.+++|+++++.+++++.|+.|++||+++++
T Consensus       123 ~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~  202 (433)
T 3bws_A          123 FQPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLA  202 (433)
T ss_dssp             SCBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCC
T ss_pred             CCceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCce
Confidence            456799999988888888889999999987 44444     345788899999999999999999999999999999999


Q ss_pred             eeEEeeeccCCeeeeeccCCCe-E-EEeeCCCeEEEEEcCCCceeeEeccCCCCeEEEEECCCCCEEEEEE--------C
Q psy12697        355 CEQQFSFHSAPALDVDWQSNTS-F-ASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCS--------D  424 (602)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--------~  424 (602)
                      ....+..+...+.+++|++++. + ++++.++.|++||+.+++.+..+..+ ..+.+++|+|++++|++++        .
T Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~~~g~~l~~~~~~~~~~~~~  281 (433)
T 3bws_A          203 YKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKI-GLPRGLLLSKDGKELYIAQFSASNQESG  281 (433)
T ss_dssp             EEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCC-SEEEEEEECTTSSEEEEEEEESCTTCSC
T ss_pred             EEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCC-CCceEEEEcCCCCEEEEEECCCCccccC
Confidence            9999888889999999999864 4 45557999999999999888877754 4599999999999999988        5


Q ss_pred             CCeEEEEeCCCCeeeEeeccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEE-EEEeCCCe
Q psy12697        425 DMTLKIWSLDKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYI-LSAGVDKT  503 (602)
Q Consensus       425 dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l-~s~~~dg~  503 (602)
                      ||.|++||+.+++.+..+.                                   +...+.+++|+|+++++ ++++.|+.
T Consensus       282 dg~i~~~d~~~~~~~~~~~-----------------------------------~~~~~~~~~~~~~g~~l~~~~~~~~~  326 (433)
T 3bws_A          282 GGRLGIYSMDKEKLIDTIG-----------------------------------PPGNKRHIVSGNTENKIYVSDMCCSK  326 (433)
T ss_dssp             CEEEEEEETTTTEEEEEEE-----------------------------------EEECEEEEEECSSTTEEEEEETTTTE
T ss_pred             CCeEEEEECCCCcEEeecc-----------------------------------CCCCcceEEECCCCCEEEEEecCCCE
Confidence            8899999999887655432                                   23345677788888754 66688999


Q ss_pred             EEEEeCCCCceeeeecccCCCeeEeeecCCc-eEEEeeC---------------CCcEEEeecCCCCceeeeecccccce
Q psy12697        504 TIIWDAASGQCEQQFSFHSAPALDVDWQSNT-SFASCST---------------DQHIHVCKLHSDKPVKSFEGHTTGQL  567 (602)
Q Consensus       504 i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~-~l~~~~~---------------d~~i~iw~~~~~~~~~~~~~~~~~~~  567 (602)
                      |++||+.+++.+..+. +...+.+++|+|++ .+++++.               ||.|++||+.+++.+..+..      
T Consensus       327 v~v~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~------  399 (433)
T 3bws_A          327 IEVYDLKEKKVQKSIP-VFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEA------  399 (433)
T ss_dssp             EEEEETTTTEEEEEEE-CSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEEC------
T ss_pred             EEEEECCCCcEEEEec-CCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecC------
Confidence            9999999998888776 67789999999999 7777766               57999999877766655543      


Q ss_pred             EEEEecCCcEEEEEECCCCCeEEEecc-CCeEEee
Q psy12697        568 VHSYKGTGGIFEVCWNSRGDKVGASAS-DGSVFKN  601 (602)
Q Consensus       568 ~~~~~~~~~i~~l~~spdg~~l~~~~~-dg~v~i~  601 (602)
                            ...+.+++|+|||++|++++. |+.|++.
T Consensus       400 ------~~~~~~~~~s~dg~~l~~~~~~d~~i~v~  428 (433)
T 3bws_A          400 ------GNQPTGLDVSPDNRYLVISDFLDHQIRVY  428 (433)
T ss_dssp             ------SSSEEEEEECTTSCEEEEEETTTTEEEEE
T ss_pred             ------CCCCceEEEcCCCCEEEEEECCCCeEEEE
Confidence                  356899999999999998875 9998874

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.4e-32  Score=264.71  Aligned_cols=273  Identities=12%  Similarity=0.045  Sum_probs=213.7

Q ss_pred             EECCCCCeEEEeeCCceEEEEecCCceeEEEeeccCceEEEEeCCCCCCCCCCCCccccccccccCCcceEeeCCCcceE
Q psy12697        147 AFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKGTGGIFEVCWNSRGTPPNPPESMEVDASIEIPQSKATKLIGHESEVF  226 (602)
Q Consensus       147 ~~s~d~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~v~  226 (602)
                      .+.+++++|++|+.||+|++||+.+++.+..+.                                          ...|.
T Consensus        43 ~~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~------------------------------------------~~~v~   80 (343)
T 3lrv_A           43 SMYYDKWVCMCRCEDGALHFTQLKDSKTITTIT------------------------------------------TPNPR   80 (343)
T ss_dssp             SSSEEEEEEEEEEETTEEEEEEESSSSCEEEEE------------------------------------------EECCC
T ss_pred             hhcCCCCEEEEECCCCcEEEEECCCCcEEEEEe------------------------------------------cCCce
Confidence            455688999999999999999999988775542                                          23455


Q ss_pred             EEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEeeCCCCCeEEEEeCCCeEEE
Q psy12697        227 ICAWNPVKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFLATGSYDGYARI  306 (602)
Q Consensus       227 ~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i  306 (602)
                      ++.|+|+   +++++.|++|++|+...                                                 .+.+
T Consensus        81 ~~~~~~~---~~s~s~D~~i~~w~~~~-------------------------------------------------~~~~  108 (343)
T 3lrv_A           81 TGGEHPA---IISRGPCNRLLLLYPGN-------------------------------------------------QITI  108 (343)
T ss_dssp             TTCCCCS---EEEECSTTEEEEEETTT-------------------------------------------------EEEE
T ss_pred             eeeeCCc---eEEecCCCeEEEEEccC-------------------------------------------------ceEE
Confidence            6677777   89999999999998642                                                 2344


Q ss_pred             EcCCCcc-eee-cccccCCeEEEEEcc--CCCEEEEEecCCcEEEEeCCCCceeEEeee-ccCCeeeeeccCCCe-EEEe
Q psy12697        307 WTSDGSL-KST-LGQHKGPIFALKWNK--RGNYILSAGVDKTTIIWDAASGQCEQQFSF-HSAPALDVDWQSNTS-FASC  380 (602)
Q Consensus       307 ~~~~~~~-~~~-~~~~~~~i~~~~~~~--~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~  380 (602)
                      |+..... ... ...|...|.+++|+|  +++++++++.||.|++||+++++....... +...+.+++|+|++. +++|
T Consensus       109 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg  188 (343)
T 3lrv_A          109 LDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALY  188 (343)
T ss_dssp             EETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEE
T ss_pred             eecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEE
Confidence            5544222 222 235778899999999  999999999999999999999988766543 455799999999865 6678


Q ss_pred             eCCCeEEEEEcCCCcee-eEecc-CCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeeeEeeccccccEEEEEECCCC
Q psy12697        381 STDQHIHVCKLHSDKPV-KSFEG-HTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHDLQAHNKEIYTIKWSPTG  458 (602)
Q Consensus       381 ~~~~~i~i~d~~~~~~~-~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~  458 (602)
                      +.||.|++||+++++.+ ..+.. |...|++++|+|++.+|+++++ +.|++||+++++.+..+..+..           
T Consensus       189 ~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~~-~~v~iwd~~~~~~~~~~~~~~~-----------  256 (343)
T 3lrv_A          189 SPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVECD-QTVVCFDLRKDVGTLAYPTYTI-----------  256 (343)
T ss_dssp             CTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEES-SBEEEEETTSSTTCBSSCCCBC-----------
T ss_pred             cCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEeC-CeEEEEEcCCCCcceeeccccc-----------
Confidence            99999999999999887 78888 9999999999999999999995 5999999998876655443211           


Q ss_pred             CCCCCCCcceeeeeeeccCCccCCe--EEEEEccCCCEEEEEeC-CCeEEEEeCCCCceeeeecccCCCeeEeeecC---
Q psy12697        459 PETSNPNMSLIFILKSTLGQHKGPI--FALKWNKRGNYILSAGV-DKTTIIWDAASGQCEQQFSFHSAPALDVDWQS---  532 (602)
Q Consensus       459 ~~~~~~~~~~~~~~~~~~~~~~~~v--~~i~~s~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~---  532 (602)
                                          |...+  .+++|+|+|++|++++. |+.|++|++.+.......    .++..++|+|   
T Consensus       257 --------------------~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~~~~~----~~~~~~~~~~~~~  312 (343)
T 3lrv_A          257 --------------------PEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKNWTK----DEESALCLQSDTA  312 (343)
T ss_dssp             -------------------------CCEEEEECTTSSEEEEEETTTTEEEEEEECTTTCSEEE----EEEEECCC----C
T ss_pred             --------------------ccccccceEEEECCCCCEEEEecCCCCcEEEEEEcccccceEe----cCceeEecCcccc
Confidence                                11222  46899999999999998 999999999766543332    5678899998   


Q ss_pred             Cc-eEEEeeCCCcEEEee
Q psy12697        533 NT-SFASCSTDQHIHVCK  549 (602)
Q Consensus       533 ~~-~l~~~~~d~~i~iw~  549 (602)
                      +. .+++++.|+.+.++-
T Consensus       313 ~~~~l~~~~~d~~~~~~~  330 (343)
T 3lrv_A          313 DFTDMDVVCGDGGIAAIL  330 (343)
T ss_dssp             CCCEEEEEEETTEEEEEE
T ss_pred             ccceeEEEecCCceEEEE
Confidence            77 899999999999885

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=100.00  E-value=6e-32  Score=246.95  Aligned_cols=276  Identities=15%  Similarity=0.144  Sum_probs=195.3

Q ss_pred             eccceeeeecccc---eeeeeeeccCCceEEEEECCCCCeEEEeeCCceEEEEecCCceeEEEeeccCceEEEEeCCCCC
Q psy12697        118 HRLTLPLWDVERG---ECLNTLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKGTGGIFEVCWNSRGT  194 (602)
Q Consensus       118 ~~~~i~vwd~~~~---~~~~~l~~h~~~V~~~~~s~d~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (602)
                      -+.+|++|++.++   ++++++++|..+|..+.|.||-.-|+...-.                                 
T Consensus        61 ~~~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~---------------------------------  107 (356)
T 2w18_A           61 CEDVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALG---------------------------------  107 (356)
T ss_dssp             ESSEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEEC---------------------------------
T ss_pred             ccceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeeec---------------------------------
Confidence            3578999999999   9999999999999999999987644433110                                 


Q ss_pred             CCCCCCCccccccccccCCcceEeeCCCcceEEEEEcCC----CCEEEEeeCCCcEEEEeCCCCCCCCCccceEEEEEEe
Q psy12697        195 PPNPPESMEVDASIEIPQSKATKLIGHESEVFICAWNPV----KDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCI  270 (602)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~----~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~  270 (602)
                                              .-+...|..++|+|+    +..+++++.+  +++|++.+                 
T Consensus       108 ------------------------~~~~~~v~sla~spd~~~~~~~l~s~g~~--~~v~~l~~-----------------  144 (356)
T 2w18_A          108 ------------------------NLEIREIRALFCSSDDESEKQVLLKSGNI--KAVLGLTK-----------------  144 (356)
T ss_dssp             ------------------------SSSEEEEEEECC------CCEEEEEEEEE--EEEEEETT-----------------
T ss_pred             ------------------------cccccceEEEEECCCccccccEEEeCCCe--EEEEecCC-----------------
Confidence                                    115667999999999    8899998754  77787632                 


Q ss_pred             cCCCcccCCCCceeEEeeCCCCCeEEEEe--CCCeEEEEcCC--CcceeecccccCCeEEEEEcc---CCCEEEEEecCC
Q psy12697        271 SKGGTEVPSNKDVTSLDWNNNGSFLATGS--YDGYARIWTSD--GSLKSTLGQHKGPIFALKWNK---RGNYILSAGVDK  343 (602)
Q Consensus       271 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~dg~i~i~~~~--~~~~~~~~~~~~~i~~~~~~~---~~~~l~~~~~dg  343 (602)
                                           ++++.++.  .|+.|++|++.  ++....+..|...+..++|++   ++..|++++.|+
T Consensus       145 ---------------------g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~  203 (356)
T 2w18_A          145 ---------------------RRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMN  203 (356)
T ss_dssp             ---------------------TEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTS
T ss_pred             ---------------------CcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEecCCC
Confidence                                 33344422  47788888763  556667778999999999999   779999999999


Q ss_pred             cEEEEeCCCCceeEEeeeccC---CeeeeeccCCCeEEEeeCCCeEEEEEcCCCceeeEeccCCCCeEEEEECCCCCEEE
Q psy12697        344 TTIIWDAASGQCEQQFSFHSA---PALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLA  420 (602)
Q Consensus       344 ~i~~wd~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~  420 (602)
                      +|++||++++++++.+..+..   .+.+++|+|++.+++....                    ..         ....++
T Consensus       204 TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~--------------------~~---------~~w~la  254 (356)
T 2w18_A          204 NIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSH--------------------PC---------AKESES  254 (356)
T ss_dssp             EEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC--------------------------------------
T ss_pred             cEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEecc--------------------CC---------Ccceee
Confidence            999999999999888865432   2333445555443222110                    00         011357


Q ss_pred             EEECCCeEEEEeCCCCeeeEeeccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeC
Q psy12697        421 SCSDDMTLKIWSLDKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGV  500 (602)
Q Consensus       421 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~  500 (602)
                      +|+.|++|++||..+++.+..+.        +.+ |+                    +|...+.+..+  ++.++++++.
T Consensus       255 SGs~D~tIklWd~~tgk~l~v~~--------~~~-p~--------------------Gh~~~~lsg~~--sg~~lASgS~  303 (356)
T 2w18_A          255 LRSPVFQLIVINPKTTLSVGVML--------YCL-PP--------------------GQAGRFLEGDV--KDHCAAAILT  303 (356)
T ss_dssp             ---CCEEEEEEETTTTEEEEEEE--------ECC-CT--------------------TCCCCEEEEEE--ETTEEEEEET
T ss_pred             ccCCCcEEEEEECCCCEEEEEEE--------eec-cC--------------------CCcceeEcccc--CCCEEEEEcC
Confidence            89999999999999988775431        111 22                    23333333333  3788999999


Q ss_pred             CCeEEEEeCCCCceeeeecccCCCee-EeeecCCc-eEEEeeCCCcEEEeec
Q psy12697        501 DKTTIIWDAASGQCEQQFSFHSAPAL-DVDWQSNT-SFASCSTDQHIHVCKL  550 (602)
Q Consensus       501 dg~i~iwd~~~~~~~~~~~~~~~~v~-~~~~s~~~-~l~~~~~d~~i~iw~~  550 (602)
                      |++|+|||+.+++++.++.+|...+. .++|+||| +|++|+.|++|+|||+
T Consensus       304 DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd~  355 (356)
T 2w18_A          304 SGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY  355 (356)
T ss_dssp             TSCEEEEETTTCSEEEEECCC--CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred             CCcEEEEECCCCcEEEEecCCCCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence            99999999999999999999988765 58999999 9999999999999995

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=100.00  E-value=8.3e-32  Score=259.99  Aligned_cols=295  Identities=17%  Similarity=0.199  Sum_probs=214.2

Q ss_pred             CCCCceeEEeeCCCCCeEEEEeCCCeEEEEcCCCcceeecccccCCeEEEEEccCCCEE-EEEecCCcEEEEeCCCCcee
Q psy12697        278 PSNKDVTSLDWNNNGSFLATGSYDGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYI-LSAGVDKTTIIWDAASGQCE  356 (602)
Q Consensus       278 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l-~~~~~dg~i~~wd~~~~~~~  356 (602)
                      .|...|.+++|+|+|++|++|+.+| +++|+.+....... .+...+..+++.++++.+ ++++.|+.|++||+.+++.+
T Consensus        17 ~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~~~~   94 (355)
T 3vu4_A           17 HVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMS-QEMRHLSKVRMLHRTNYVAFVTGVKEVVHIWDDVKKQDV   94 (355)
T ss_dssp             --CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEE-EECSCCCEEEECTTSSEEEEECSSTTEEEEEETTTTEEE
T ss_pred             cCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeee-eecCCeEEEEEcCCCCEEEEEECCccEEEEEECCCCcEE
Confidence            3578899999999999999998776 78999774332222 222357888899988887 46777899999999999998


Q ss_pred             EEeeeccCCeeeeeccCCCeEEEeeCCCeEEEEEcCCC-ceeeEeccCCCCeEEEEECCCCCEEEE--EECCCeEEEEeC
Q psy12697        357 QQFSFHSAPALDVDWQSNTSFASCSTDQHIHVCKLHSD-KPVKSFEGHTNEVNAIKWDPQGLLLAS--CSDDMTLKIWSL  433 (602)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~--~~~dg~i~iwd~  433 (602)
                      ..+. +...+.++.++++..+++  .++.|++||+.++ +.+..+..   ....+++++  .++++  |+.||.|++||+
T Consensus        95 ~~~~-~~~~v~~v~~~~~~~~~~--~~~~i~i~d~~~~~~~~~~~~~---~~~~~~~s~--~~la~~sg~~~g~v~iwd~  166 (355)
T 3vu4_A           95 SRIK-VDAPVKDLFLSREFIVVS--YGDVISVFKFGNPWKRITDDIR---FGGVCEFSN--GLLVYSNEFNLGQIHITKL  166 (355)
T ss_dssp             EEEE-CSSCEEEEEECSSEEEEE--ETTEEEEEESSTTCCBSSCCEE---EEEEEEEET--TEEEEEESSCTTCEEEEEC
T ss_pred             EEEE-CCCceEEEEEcCCEEEEE--EcCEEEEEECCCCceeeEEecc---CCceEEEEc--cEEEEeCCCcCcEEEEEEC
Confidence            8887 556899999988765443  4789999999988 66666654   445566777  56666  578999999999


Q ss_pred             CCCeeeEeeccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCCCe-EEEEeCCCC
Q psy12697        434 DKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKT-TIIWDAASG  512 (602)
Q Consensus       434 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~-i~iwd~~~~  512 (602)
                      .++..........   ....               .......+.+|...|.+++|+|+|++|++|+.||+ |++||+.++
T Consensus       167 ~~~~~~~~~~~~~---~~~~---------------~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~  228 (355)
T 3vu4_A          167 QSSGSATTQDQGV---QQKA---------------ILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDG  228 (355)
T ss_dssp             CC------------------------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTC
T ss_pred             CCCCccccccccc---cccc---------------cCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCC
Confidence            8765322111000   0000               00002345678999999999999999999999998 999999999


Q ss_pred             ceeeeec-c-cCCCeeEeeecCCc-eEEEeeCCCcEEEeecCCCCce--eeeecc-----cc---cceEEEEec--CCcE
Q psy12697        513 QCEQQFS-F-HSAPALDVDWQSNT-SFASCSTDQHIHVCKLHSDKPV--KSFEGH-----TT---GQLVHSYKG--TGGI  577 (602)
Q Consensus       513 ~~~~~~~-~-~~~~v~~~~~s~~~-~l~~~~~d~~i~iw~~~~~~~~--~~~~~~-----~~---~~~~~~~~~--~~~i  577 (602)
                      +++..+. + |...|.+++|+|++ +|++++.|+.|++||+..+...  ..+...     ..   ......+..  ..+.
T Consensus       229 ~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  308 (355)
T 3vu4_A          229 VLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRG  308 (355)
T ss_dssp             CEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCC
T ss_pred             cEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCCCCc
Confidence            9999998 5 99999999999999 9999999999999999876321  111110     00   000011111  2234


Q ss_pred             EEEEECCCCCeEEEeccCCeEEe
Q psy12697        578 FEVCWNSRGDKVGASASDGSVFK  600 (602)
Q Consensus       578 ~~l~~spdg~~l~~~~~dg~v~i  600 (602)
                      ..++|+|||++|++++.||.+++
T Consensus       309 ~~~a~~~d~~~l~~~~~dg~~~~  331 (355)
T 3vu4_A          309 CKIAWISESSLVVVWPHTRMIET  331 (355)
T ss_dssp             CEEEESSSSEEEEEETTTTEEEE
T ss_pred             eEEEEeCCCCEEEEEeCCCeEEE
Confidence            67999999999999999998875

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=100.00  E-value=7.1e-32  Score=268.10  Aligned_cols=253  Identities=22%  Similarity=0.367  Sum_probs=204.9

Q ss_pred             eecccccCCeEEEEEccC-CCEEEEEecCCcEEEEeCCC----------CceeEEeeeccCCeeeeeccCCC--eEEEee
Q psy12697        315 STLGQHKGPIFALKWNKR-GNYILSAGVDKTTIIWDAAS----------GQCEQQFSFHSAPALDVDWQSNT--SFASCS  381 (602)
Q Consensus       315 ~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~i~~wd~~~----------~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~  381 (602)
                      .....|.+.|++++|+|+ +++|++++.+|.|++||+.+          ......+..|...+.+++|++++  .+++++
T Consensus       122 ~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~  201 (430)
T 2xyi_A          122 EIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSAS  201 (430)
T ss_dssp             EEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEEC
T ss_pred             EEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEe
Confidence            344578999999999997 67899999999999999986          57778888999999999999974  689999


Q ss_pred             CCCeEEEEEcCCCce-------eeEeccCCCCeEEEEECC-CCCEEEEEECCCeEEEEeCCCCe---eeEeeccccccEE
Q psy12697        382 TDQHIHVCKLHSDKP-------VKSFEGHTNEVNAIKWDP-QGLLLASCSDDMTLKIWSLDKDN---CVHDLQAHNKEIY  450 (602)
Q Consensus       382 ~~~~i~i~d~~~~~~-------~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~---~~~~~~~~~~~i~  450 (602)
                      .||.|++|++..+..       ...+.+|...|.+++|+| ++.+|++++.||.|++||++++.   .+..+.       
T Consensus       202 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~-------  274 (430)
T 2xyi_A          202 DDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVD-------  274 (430)
T ss_dssp             TTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEE-------
T ss_pred             CCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEee-------
Confidence            999999999987432       456778999999999999 78899999999999999999762   333333       


Q ss_pred             EEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCC-EEEEEeCCCeEEEEeCCC-CceeeeecccCCCeeEe
Q psy12697        451 TIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGN-YILSAGVDKTTIIWDAAS-GQCEQQFSFHSAPALDV  528 (602)
Q Consensus       451 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~-~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~v~~~  528 (602)
                                                 .|...|++++|+|+++ +|++|+.||.|++||+++ +.++..+..|...|.++
T Consensus       275 ---------------------------~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i  327 (430)
T 2xyi_A          275 ---------------------------AHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQV  327 (430)
T ss_dssp             ---------------------------CCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEE
T ss_pred             ---------------------------cCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEE
Confidence                                       3556677777777776 688999999999999998 56788899999999999


Q ss_pred             eecCCc--eEEEeeCCCcEEEeecCCCCceeeeecccc--cceEEEEec-CCcEEEEEECCCCC-eEEEeccCCeEEee
Q psy12697        529 DWQSNT--SFASCSTDQHIHVCKLHSDKPVKSFEGHTT--GQLVHSYKG-TGGIFEVCWNSRGD-KVGASASDGSVFKN  601 (602)
Q Consensus       529 ~~s~~~--~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~--~~~~~~~~~-~~~i~~l~~spdg~-~l~~~~~dg~v~i~  601 (602)
                      +|+|++  .|++++.|+.|+|||+..............  ...+..+.+ ...|.+++|+|+++ +|++++.||.|+|.
T Consensus       328 ~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw  406 (430)
T 2xyi_A          328 QWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVW  406 (430)
T ss_dssp             EECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEE
T ss_pred             EECCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEe
Confidence            999998  689999999999999976322111100000  123333333 36799999999999 89999999999874

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.4e-31  Score=267.83  Aligned_cols=269  Identities=13%  Similarity=0.121  Sum_probs=216.1

Q ss_pred             CceeEEeeCCCCCeEEEEeCCCeEEEEcCC-Cc---ceeecc--------------------------------------
Q psy12697        281 KDVTSLDWNNNGSFLATGSYDGYARIWTSD-GS---LKSTLG--------------------------------------  318 (602)
Q Consensus       281 ~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~-~~---~~~~~~--------------------------------------  318 (602)
                      .++.+++|+|+|++|+++ .++.|++||.. ++   ....+.                                      
T Consensus         5 ~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (450)
T 2vdu_B            5 HPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDS   83 (450)
T ss_dssp             CCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC-----------------------------------
T ss_pred             ccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCcc
Confidence            568999999999966555 67899999965 44   333322                                      


Q ss_pred             ----------------cccCCeEEEEEccCCCEE-EEEecCCcEEEEeCC--CCceeEEee--eccCCeeeeeccCCC-e
Q psy12697        319 ----------------QHKGPIFALKWNKRGNYI-LSAGVDKTTIIWDAA--SGQCEQQFS--FHSAPALDVDWQSNT-S  376 (602)
Q Consensus       319 ----------------~~~~~i~~~~~~~~~~~l-~~~~~dg~i~~wd~~--~~~~~~~~~--~~~~~~~~~~~~~~~-~  376 (602)
                                      .|...|.+++|+|++++| ++++.||.|++||+.  +++....+.  .+...+.+++|+|++ .
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~  163 (450)
T 2vdu_B           84 IKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTT  163 (450)
T ss_dssp             ----------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSE
T ss_pred             ccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCE
Confidence                            233479999999999996 889899999999999  888888776  456889999999985 5


Q ss_pred             EEEeeCCCeEEEEEcCCCceee----EeccCCCCeEEEEECCC---CCEEEEEECCCeEEEEeCCCCeeeEeeccccccE
Q psy12697        377 FASCSTDQHIHVCKLHSDKPVK----SFEGHTNEVNAIKWDPQ---GLLLASCSDDMTLKIWSLDKDNCVHDLQAHNKEI  449 (602)
Q Consensus       377 ~~~~~~~~~i~i~d~~~~~~~~----~~~~~~~~i~~~~~~~~---~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i  449 (602)
                      +++++.+|.+++|++.+++...    .+.+|...|.+++|+|+   +++|++++.|+.|++||+++++.+..+       
T Consensus       164 l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~-------  236 (450)
T 2vdu_B          164 VIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKW-------  236 (450)
T ss_dssp             EEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEE-------
T ss_pred             EEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeee-------
Confidence            8888999999999998877554    77889999999999999   999999999999999999887665542       


Q ss_pred             EEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeeeccc--------
Q psy12697        450 YTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFH--------  521 (602)
Q Consensus       450 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--------  521 (602)
                                                +.+|...|.+++|+ ++++|++++.|+.|++||+.+++++..+..+        
T Consensus       237 --------------------------~~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~  289 (450)
T 2vdu_B          237 --------------------------LFGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLN  289 (450)
T ss_dssp             --------------------------CCCCSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCC
T ss_pred             --------------------------ecCCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhh
Confidence                                      22467788888899 9999999999999999999999988877632        


Q ss_pred             -----------------CCCeeEeeecCCc-eEEEee-CCCcEEEeec--CCCCceeeeecccccceEEEEecCCcEEEE
Q psy12697        522 -----------------SAPALDVDWQSNT-SFASCS-TDQHIHVCKL--HSDKPVKSFEGHTTGQLVHSYKGTGGIFEV  580 (602)
Q Consensus       522 -----------------~~~v~~~~~s~~~-~l~~~~-~d~~i~iw~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l  580 (602)
                                       ...|.+++|+|++ ++++++ .|+.|++|++  .++..+         ..+..+..++.|.++
T Consensus       290 ~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l---------~~~~~~~~~~~v~~~  360 (450)
T 2vdu_B          290 DQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEMSEKQKGDL---------ALKQIITFPYNVISL  360 (450)
T ss_dssp             TTSBC----------CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEECSSSTTCE---------EEEEEEECSSCEEEE
T ss_pred             hcccccccccccccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEeccCCCCce---------eeccEeccCCceEEE
Confidence                             3568999999999 888888 8999999998  443211         222334445779999


Q ss_pred             EECCCCCeEEEec
Q psy12697        581 CWNSRGDKVGASA  593 (602)
Q Consensus       581 ~~spdg~~l~~~~  593 (602)
                      +|+|++.++++++
T Consensus       361 ~~~~~~~~v~~~~  373 (450)
T 2vdu_B          361 SAHNDEFQVTLDN  373 (450)
T ss_dssp             EEETTEEEEEECC
T ss_pred             EecCCcEEEEEec
Confidence            9999654444444

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=100.00  E-value=4.2e-31  Score=263.71  Aligned_cols=301  Identities=14%  Similarity=0.065  Sum_probs=238.0

Q ss_pred             ceeeeecccc--eeeeeeeccCCceEEEEECCCCCeEEEeeCCceEEEEecCCceeEEEeeccCceEEEEeCCCCCCCCC
Q psy12697        121 TLPLWDVERG--ECLNTLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKGTGGIFEVCWNSRGTPPNP  198 (602)
Q Consensus       121 ~i~vwd~~~~--~~~~~l~~h~~~V~~~~~s~d~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (602)
                      .|.+||..++  +.+..+..+. .+.+++|+|+++++++++.|+.|++||+.+++.+.....                  
T Consensus       102 ~l~~~d~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~------------------  162 (433)
T 3bws_A          102 KLIALDKEGITHRFISRFKTGF-QPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPP------------------  162 (433)
T ss_dssp             CEEECCBTTCSEEEEEEEECSS-CBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCC------------------
T ss_pred             EEEEECCCCCcceEEEEEcCCC-CceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCc------------------
Confidence            4555555445  6667776654 456999999888899999999999999999987753321                  


Q ss_pred             CCCccccccccccCCcceEeeCCCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccC
Q psy12697        199 PESMEVDASIEIPQSKATKLIGHESEVFICAWNPVKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVP  278 (602)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (602)
                                       ..+.+|...|.+++|+|++.++++++.|+.|++||+.+++....     .           ..
T Consensus       163 -----------------~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~-----~-----------~~  209 (433)
T 3bws_A          163 -----------------EKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAYKAT-----V-----------DL  209 (433)
T ss_dssp             -----------------HHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEEE-----E-----------EC
T ss_pred             -----------------ccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceEEEE-----E-----------cC
Confidence                             13457899999999999999999999999999999986543210     0           12


Q ss_pred             CCCceeEEeeCCCCCeEEEE-eCCCeEEEEcCCC-cceeecccccCCeEEEEEccCCCEEEEEe--------cCCcEEEE
Q psy12697        279 SNKDVTSLDWNNNGSFLATG-SYDGYARIWTSDG-SLKSTLGQHKGPIFALKWNKRGNYILSAG--------VDKTTIIW  348 (602)
Q Consensus       279 ~~~~i~~~~~~~~~~~l~~~-~~dg~i~i~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--------~dg~i~~w  348 (602)
                      +...+.+++|+|+++.++++ +.++.|++||+.. .....+. +...+.+++|+|+++++++++        .|+.|++|
T Consensus       210 ~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~  288 (433)
T 3bws_A          210 TGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTD-KIGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIY  288 (433)
T ss_dssp             SSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECC-CCSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEE
T ss_pred             CCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEec-CCCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEE
Confidence            35779999999999988554 4799999999864 4444444 345699999999999999888        48899999


Q ss_pred             eCCCCceeEEeeeccCCeeeeeccCCC--eEEEeeCCCeEEEEEcCCCceeeEeccCCCCeEEEEECCCCCEEEEEEC--
Q psy12697        349 DAASGQCEQQFSFHSAPALDVDWQSNT--SFASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSD--  424 (602)
Q Consensus       349 d~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~--  424 (602)
                      |+.+++....+. +...+..++|+|++  .+++++.++.|++||+.+++.+..+. +...+.+++|+|++++|++++.  
T Consensus       289 d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~  366 (433)
T 3bws_A          289 SMDKEKLIDTIG-PPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIP-VFDKPNTIALSPDGKYLYVSCRGP  366 (433)
T ss_dssp             ETTTTEEEEEEE-EEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEE-CSSSEEEEEECTTSSEEEEEECCC
T ss_pred             ECCCCcEEeecc-CCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEec-CCCCCCeEEEcCCCCEEEEEecCC
Confidence            999988776653 34477889999986  34666889999999999998887776 6778999999999999998887  


Q ss_pred             -------------CCeEEEEeCCCCeeeEeeccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccC
Q psy12697        425 -------------DMTLKIWSLDKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKR  491 (602)
Q Consensus       425 -------------dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~  491 (602)
                                   ||.|++||+.+++.+..+..                                   ...+.+++|+|+
T Consensus       367 ~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~-----------------------------------~~~~~~~~~s~d  411 (433)
T 3bws_A          367 NHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEA-----------------------------------GNQPTGLDVSPD  411 (433)
T ss_dssp             CCTTTCTTSCCSSCCEEEEEETTTTEEEEEEEC-----------------------------------SSSEEEEEECTT
T ss_pred             CccccccccccccceEEEEEECCCCcEEEEecC-----------------------------------CCCCceEEEcCC
Confidence                         57999999999887766543                                   234667788889


Q ss_pred             CCEEEEEeC-CCeEEEEeCCC
Q psy12697        492 GNYILSAGV-DKTTIIWDAAS  511 (602)
Q Consensus       492 ~~~l~s~~~-dg~i~iwd~~~  511 (602)
                      |++|++++. |+.|++|+++.
T Consensus       412 g~~l~~~~~~d~~i~v~~~~~  432 (433)
T 3bws_A          412 NRYLVISDFLDHQIRVYRRDG  432 (433)
T ss_dssp             SCEEEEEETTTTEEEEEEETT
T ss_pred             CCEEEEEECCCCeEEEEEecC
Confidence            999988875 99999999863

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=100.00  E-value=1.5e-31  Score=265.76  Aligned_cols=242  Identities=26%  Similarity=0.470  Sum_probs=206.4

Q ss_pred             cCCCCceeEEeeCCC-CCeEEEEeCCCeEEEEcCCC-----------cceeecccccCCeEEEEEccCCC-EEEEEecCC
Q psy12697        277 VPSNKDVTSLDWNNN-GSFLATGSYDGYARIWTSDG-----------SLKSTLGQHKGPIFALKWNKRGN-YILSAGVDK  343 (602)
Q Consensus       277 ~~~~~~i~~~~~~~~-~~~l~~~~~dg~i~i~~~~~-----------~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg  343 (602)
                      ..|...|++++|+|+ +.+|++++.+|.|++|++..           .....+..|...|.+++|+|++. +|++++.||
T Consensus       125 ~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg  204 (430)
T 2xyi_A          125 INHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDH  204 (430)
T ss_dssp             EEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECTTS
T ss_pred             EcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeCCC
Confidence            346789999999997 78999999999999999763           55667788999999999999998 999999999


Q ss_pred             cEEEEeCCCCce-------eEEeeeccCCeeeeeccC-C-CeEEEeeCCCeEEEEEcCCC---ceeeEeccCCCCeEEEE
Q psy12697        344 TTIIWDAASGQC-------EQQFSFHSAPALDVDWQS-N-TSFASCSTDQHIHVCKLHSD---KPVKSFEGHTNEVNAIK  411 (602)
Q Consensus       344 ~i~~wd~~~~~~-------~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~i~i~d~~~~---~~~~~~~~~~~~i~~~~  411 (602)
                      .|++||+..+..       ...+..|...+.+++|+| + ..+++++.++.|++||++++   +++..+..|...|++++
T Consensus       205 ~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~  284 (430)
T 2xyi_A          205 TICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLS  284 (430)
T ss_dssp             CEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEEEEE
T ss_pred             eEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeEEEE
Confidence            999999987432       345667888999999998 3 56889999999999999987   57788889999999999


Q ss_pred             ECCCCC-EEEEEECCCeEEEEeCCC-CeeeEeeccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEc
Q psy12697        412 WDPQGL-LLASCSDDMTLKIWSLDK-DNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWN  489 (602)
Q Consensus       412 ~~~~~~-~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s  489 (602)
                      |+|++. +|++|+.||.|++||+++ ..++..+..                                  |...|.+++|+
T Consensus       285 ~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~----------------------------------h~~~v~~i~~s  330 (430)
T 2xyi_A          285 FNPYSEFILATGSADKTVALWDLRNLKLKLHSFES----------------------------------HKDEIFQVQWS  330 (430)
T ss_dssp             ECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEC----------------------------------CSSCEEEEEEC
T ss_pred             eCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeec----------------------------------CCCCEEEEEEC
Confidence            999887 689999999999999987 344555544                                  45556666666


Q ss_pred             cCCC-EEEEEeCCCeEEEEeCCC--------------CceeeeecccCCCeeEeeecCCc--eEEEeeCCCcEEEeecCC
Q psy12697        490 KRGN-YILSAGVDKTTIIWDAAS--------------GQCEQQFSFHSAPALDVDWQSNT--SFASCSTDQHIHVCKLHS  552 (602)
Q Consensus       490 ~~~~-~l~s~~~dg~i~iwd~~~--------------~~~~~~~~~~~~~v~~~~~s~~~--~l~~~~~d~~i~iw~~~~  552 (602)
                      |+++ +|++++.||.|++||+..              .+++..+.+|...|.+++|+|++  .+++++.||.|+||++..
T Consensus       331 p~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~  410 (430)
T 2xyi_A          331 PHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAE  410 (430)
T ss_dssp             SSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECH
T ss_pred             CCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEccc
Confidence            6764 699999999999999987              36677888899999999999998  789999999999999864

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=100.00  E-value=6.3e-31  Score=289.98  Aligned_cols=417  Identities=10%  Similarity=0.043  Sum_probs=302.2

Q ss_pred             cCCceEEEEECCCCCeEEEeeCCceEEEEecCCceeEEEeeccCceEEEEeCCCCCCCCCCCCc------cccccccccC
Q psy12697        139 HTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKGTGGIFEVCWNSRGTPPNPPESM------EVDASIEIPQ  212 (602)
Q Consensus       139 h~~~V~~~~~s~d~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~  212 (602)
                      +...+.+.+|||  +.||.++. +.|.+|++.+++..........+..++|+|+|+.++.....      .....+....
T Consensus        13 ~~~~~~~~~~S~--~~iaf~~~-~~l~~~~~~gg~~~~lt~~~~~v~~~~~SPDG~~la~~s~~~~~~~~~~i~~~d~~~   89 (1045)
T 1k32_A           13 MPNLLLNPDIHG--DRIIFVCC-DDLWEHDLKSGSTRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGEN   89 (1045)
T ss_dssp             CCCCCEEEEEET--TEEEEEET-TEEEEEETTTCCEEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTT
T ss_pred             ccceEeCcEEeC--CEEEEEEC-CcEEEEECCCCcEEEeeeCCCcccCeEECCCCCEEEEEEeeccCCCCCeEEEEECCC
Confidence            466788999995  57887765 68999999988876655566778999999999987755332      1122334455


Q ss_pred             CcceEeeCCCcce-------EEEEEcCCCCEEEEeeCC------CcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCC
Q psy12697        213 SKATKLIGHESEV-------FICAWNPVKDFLASGSGD------STARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPS  279 (602)
Q Consensus       213 ~~~~~l~~h~~~v-------~~~~~~~~~~~l~s~~~d------g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (602)
                      .....+..|...+       ..++|+|||+.+++++.+      ..|.+|++.++....           +        .
T Consensus        90 g~~~~lt~~~~~~~~~~~~~~~~~~SpDg~ll~~~~~~~~~~~~~~l~~~~~~~g~~~~-----------l--------~  150 (1045)
T 1k32_A           90 GEIKRITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVP-----------L--------N  150 (1045)
T ss_dssp             TEEEECCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEE-----------C--------C
T ss_pred             CCeEEcccCCCcccccccccccccCCCCCEEEEEECCcCCCcccceEEEEECCCCCeEE-----------e--------c
Confidence            5677888899888       999999999977777654      346777775543110           0        0


Q ss_pred             CCceeEEeeCCCCCeEEEEeC------------CCeEEEEcC-CCcceeecccccCCeEEEEEccCCCEEEEEecCCcEE
Q psy12697        280 NKDVTSLDWNNNGSFLATGSY------------DGYARIWTS-DGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTI  346 (602)
Q Consensus       280 ~~~i~~~~~~~~~~~l~~~~~------------dg~i~i~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~  346 (602)
                      ......++|+| | ++++++.            +....+|.. .+.....+..|...+.++.|+++ ..+++++.++.+.
T Consensus       151 ~~~~~~~~~sp-G-~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~~~v~~~~~s~d-~l~~~~~~dg~~~  227 (1045)
T 1k32_A          151 LGPATHILFAD-G-RRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVGH-RIYFITDIDGFGQ  227 (1045)
T ss_dssp             SCSCSEEEEET-T-EEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEEEEEETT-EEEEEECTTSSCE
T ss_pred             CCCcceeeeCC-C-EEEEeccCCCccccccccCCCcCCEEEECCCCCeEECcCCCCcccceEEeCC-EEEEEEeccCceE
Confidence            12245677999 8 8887653            223455532 12444555889999999999988 6667778889999


Q ss_pred             EEeCCC-CceeEEeeeccCCeeeeeccCCCeEEEeeCCCeEEEEEcCCCceeeEecc-----------CCCCeEEEEEC-
Q psy12697        347 IWDAAS-GQCEQQFSFHSAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEG-----------HTNEVNAIKWD-  413 (602)
Q Consensus       347 ~wd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~-----------~~~~i~~~~~~-  413 (602)
                      +|.+.. +.....+..+. .+....|+|++..++...++.|++|++...+ +..+..           |...+.+++|+ 
T Consensus       228 l~~~~~~g~~~~~l~~~~-~~~~~~~SpDG~~la~~~~~~i~~~d~~~~~-l~~l~~~~~~~~~~~~~~~~~v~~~~~S~  305 (1045)
T 1k32_A          228 IYSTDLDGKDLRKHTSFT-DYYPRHLNTDGRRILFSKGGSIYIFNPDTEK-IEKIEIGDLESPEDRIISIPSKFAEDFSP  305 (1045)
T ss_dssp             EEEEETTSCSCEECCCCC-SSCEEEEEESSSCEEEEETTEEEEECTTTCC-EEECCCCCCCBCCSEEEECGGGGEEEEEE
T ss_pred             EEEEeCCCCcceEecCCC-CcceeeEcCCCCEEEEEeCCEEEEecCCceE-eeeeccCcccccccccccccccceeeecC
Confidence            997653 33344444443 3556688998775544579999999995443 335544           34468999999 


Q ss_pred             CCCCEEEEEECCCeEEEEeCCCCeeeEeeccccc-cEEEEEECCCCCCCCCCC-cceee-eee------eccCCccCCeE
Q psy12697        414 PQGLLLASCSDDMTLKIWSLDKDNCVHDLQAHNK-EIYTIKWSPTGPETSNPN-MSLIF-ILK------STLGQHKGPIF  484 (602)
Q Consensus       414 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~i~~~~~~~~~~~~~~~~-~~~~~-~~~------~~~~~~~~~v~  484 (602)
                      |+|++|++++ ++.|.+|++..++.. .+..+.. .+..++|+ ++..++... ...++ .+.      ..+..|...+.
T Consensus       306 pdG~~la~~~-~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~~l~~~~~~~~  382 (1045)
T 1k32_A          306 LDGDLIAFVS-RGQAFIQDVSGTYVL-KVPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAEKFEENLGNVF  382 (1045)
T ss_dssp             CGGGCEEEEE-TTEEEEECTTSSBEE-ECSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCEEECCCCCCSEE
T ss_pred             CCCCEEEEEE-cCEEEEEcCCCCceE-EccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCceEecCCcccee
Confidence            9999999988 789999999877644 3556666 88999999 876443221 12222 111      12336778899


Q ss_pred             EEEEccCCCEEEEEeCCCeEEEEeCCCCceeeeecccCCCeeEeeecCCc-eEEEeeCCC----------cEEEeecCCC
Q psy12697        485 ALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNT-SFASCSTDQ----------HIHVCKLHSD  553 (602)
Q Consensus       485 ~i~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~-~l~~~~~d~----------~i~iw~~~~~  553 (602)
                      .++|||||++|++++.++.|++||+.+++.......|...+.+++|+||| +|++++.++          .|++||+.++
T Consensus       383 ~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g  462 (1045)
T 1k32_A          383 AMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGR  462 (1045)
T ss_dssp             EEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTT
T ss_pred             eeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCC
Confidence            99999999999999999999999999999888887899999999999999 888877654          8999999876


Q ss_pred             CceeeeecccccceEEEEecCCcEEEEEECCCCCeEEEeccCCe
Q psy12697        554 KPVKSFEGHTTGQLVHSYKGTGGIFEVCWNSRGDKVGASASDGS  597 (602)
Q Consensus       554 ~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~  597 (602)
                      + +..+..+           ...+..++|+|||++|++++.++.
T Consensus       463 ~-~~~l~~~-----------~~~~~~~~~spdG~~l~~~s~~~~  494 (1045)
T 1k32_A          463 K-IFAATTE-----------NSHDYAPAFDADSKNLYYLSYRSL  494 (1045)
T ss_dssp             E-EEECSCS-----------SSBEEEEEECTTSCEEEEEESCCC
T ss_pred             c-EEEeeCC-----------CcccCCceEcCCCCEEEEEecccC
Confidence            5 3333333           255788999999999999887654

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1e-31  Score=258.77  Aligned_cols=272  Identities=12%  Similarity=0.099  Sum_probs=211.4

Q ss_pred             EEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEeeCCCCCeEEEEeCCCeEEEE
Q psy12697        228 CAWNPVKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFLATGSYDGYARIW  307 (602)
Q Consensus       228 ~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~  307 (602)
                      ..+.+++.+|++|+.||+|++||+.+++......                  ...|.++.|+|+   +++++.|+.|++|
T Consensus        42 ~~~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~------------------~~~v~~~~~~~~---~~s~s~D~~i~~w  100 (343)
T 3lrv_A           42 KSMYYDKWVCMCRCEDGALHFTQLKDSKTITTIT------------------TPNPRTGGEHPA---IISRGPCNRLLLL  100 (343)
T ss_dssp             SSSSEEEEEEEEEEETTEEEEEEESSSSCEEEEE------------------EECCCTTCCCCS---EEEECSTTEEEEE
T ss_pred             hhhcCCCCEEEEECCCCcEEEEECCCCcEEEEEe------------------cCCceeeeeCCc---eEEecCCCeEEEE
Confidence            3455678899999999999999998776432111                  145778888888   9999999999999


Q ss_pred             cCCCcceeecccccCCeEEEEEccCCCEEEEEecCCcEEEEeCCCCceeEEee-eccCCeeeeeccC--CC-eEEEeeCC
Q psy12697        308 TSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFS-FHSAPALDVDWQS--NT-SFASCSTD  383 (602)
Q Consensus       308 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~-~~~~~~~~~~~~~--~~-~~~~~~~~  383 (602)
                      +..+                                .+.+||..+++.+..+. .+...+.++.|+|  ++ .+++++.|
T Consensus       101 ~~~~--------------------------------~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~d  148 (343)
T 3lrv_A          101 YPGN--------------------------------QITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNR  148 (343)
T ss_dssp             ETTT--------------------------------EEEEEETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETT
T ss_pred             EccC--------------------------------ceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCC
Confidence            8764                                46778888888666655 5667899999999  64 57889999


Q ss_pred             CeEEEEEcCCCceeeEecc-CCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeee-EeeccccccEEEEEECCCCCCC
Q psy12697        384 QHIHVCKLHSDKPVKSFEG-HTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCV-HDLQAHNKEIYTIKWSPTGPET  461 (602)
Q Consensus       384 ~~i~i~d~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~  461 (602)
                      |.|++||+++++....... |...+.+++|+|++++|++|+.||.|++||+++++.+ ..+..                 
T Consensus       149 g~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~~-----------------  211 (343)
T 3lrv_A          149 GTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFPV-----------------  211 (343)
T ss_dssp             CCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCEECCC-----------------
T ss_pred             CcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCccEEec-----------------
Confidence            9999999999988766644 4558999999999999999999999999999987765 44433                 


Q ss_pred             CCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeeecc---cCCCee--EeeecCCc-e
Q psy12697        462 SNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSF---HSAPAL--DVDWQSNT-S  535 (602)
Q Consensus       462 ~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~---~~~~v~--~~~~s~~~-~  535 (602)
                                      +|..+|.+++|+|+|++|++++ |+.|++||+++++.+..+..   |...+.  +++|+|++ +
T Consensus       212 ----------------~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  274 (343)
T 3lrv_A          212 ----------------DEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKN  274 (343)
T ss_dssp             ----------------CTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSE
T ss_pred             ----------------cCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceeecccccccccccceEEEECCCCCE
Confidence                            1566777888888999999999 55999999999887665553   444444  59999999 9


Q ss_pred             EEEeeC-CCcEEEeecCCCCceeeeecccccceEEEEecCCcEEEEEECC---CCCeEEEeccCCeEEee
Q psy12697        536 FASCST-DQHIHVCKLHSDKPVKSFEGHTTGQLVHSYKGTGGIFEVCWNS---RGDKVGASASDGSVFKN  601 (602)
Q Consensus       536 l~~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp---dg~~l~~~~~dg~v~i~  601 (602)
                      |++++. |+.|++|++.........               .++..++|+|   +++.|++++.||.+.+.
T Consensus       275 l~~~s~~d~~i~v~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~  329 (343)
T 3lrv_A          275 MIAYSNESNSLTIYKFDKKTKNWTK---------------DEESALCLQSDTADFTDMDVVCGDGGIAAI  329 (343)
T ss_dssp             EEEEETTTTEEEEEEECTTTCSEEE---------------EEEEECCC----CCCCEEEEEEETTEEEEE
T ss_pred             EEEecCCCCcEEEEEEcccccceEe---------------cCceeEecCccccccceeEEEecCCceEEE
Confidence            999888 999999998665432221               3467788988   88899999999988764

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=100.00  E-value=6.5e-31  Score=240.14  Aligned_cols=280  Identities=13%  Similarity=0.087  Sum_probs=198.9

Q ss_pred             eEEEEEcCCCC---EEEEeeCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEeeCCCCCeEEEEeCC
Q psy12697        225 VFICAWNPVKD---FLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFLATGSYD  301 (602)
Q Consensus       225 v~~~~~~~~~~---~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d  301 (602)
                      +.++.|-..+-   .+++++. ..|++|+..+...-     .  ..+      ....+..+|..+.+.||..-|++..-.
T Consensus        42 ~~~~~~~~~~~~~~~~~~~~~-~~v~lw~~~~~~~~-----~--~~~------~~~~~~~~v~~~~~~~~~~~~~~~~~~  107 (356)
T 2w18_A           42 VSAMFWERAGCKEPCIITACE-DVVSLWKALDAWQW-----E--KLY------TWHFAEVPVLQIVPVPDVYNLVCVALG  107 (356)
T ss_dssp             EEEEEEC----CEEEEEEEES-SEEEEEEESSSSBE-----E--EEE------EEECCSSCEEEECCCTTCCSCEEEEEC
T ss_pred             EeeeeeccCCCCccEEEEecc-ceEEEcccCCCccc-----e--eeE------EEeccCceeEEEEEcCcccceeeeeec
Confidence            55666655442   4555555 78999999876210     0  111      112346789999999986655543211


Q ss_pred             CeEEEEcCCCcceeecccccCCeEEEEEccC----CCEEEEEecCCcEEEEeCCCCceeEEeeeccCCeeeeeccCCCeE
Q psy12697        302 GYARIWTSDGSLKSTLGQHKGPIFALKWNKR----GNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTSF  377 (602)
Q Consensus       302 g~i~i~~~~~~~~~~~~~~~~~i~~~~~~~~----~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  377 (602)
                                      .-+...|..++++|+    ++.+++++.+  +.+|++.++                      .+
T Consensus       108 ----------------~~~~~~v~sla~spd~~~~~~~l~s~g~~--~~v~~l~~g----------------------~l  147 (356)
T 2w18_A          108 ----------------NLEIREIRALFCSSDDESEKQVLLKSGNI--KAVLGLTKR----------------------RL  147 (356)
T ss_dssp             ----------------SSSEEEEEEECC------CCEEEEEEEEE--EEEEEETTT----------------------EE
T ss_pred             ----------------cccccceEEEEECCCccccccEEEeCCCe--EEEEecCCC----------------------cE
Confidence                            124567999999999    9999998854  778876443                      34


Q ss_pred             EEee---CCCeEEEEEc-CCCceeeEeccCCCCeEEEEECC---CCCEEEEEECCCeEEEEeCCCCeeeEeeccccccEE
Q psy12697        378 ASCS---TDQHIHVCKL-HSDKPVKSFEGHTNEVNAIKWDP---QGLLLASCSDDMTLKIWSLDKDNCVHDLQAHNKEIY  450 (602)
Q Consensus       378 ~~~~---~~~~i~i~d~-~~~~~~~~~~~~~~~i~~~~~~~---~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~  450 (602)
                      +..+   .|+.|++|++ .+++.+..+.+|...++.++|+|   ++.+|++++.|++|+|||++++++++++..|...  
T Consensus       148 v~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~--  225 (356)
T 2w18_A          148 VSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSY--  225 (356)
T ss_dssp             EEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC----
T ss_pred             EEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcc--
Confidence            4443   4899999999 44788888889999999999999   7899999999999999999999999998764331  


Q ss_pred             EEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCE------------EEEEeCCCeEEEEeCCCCceeeee
Q psy12697        451 TIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNY------------ILSAGVDKTTIIWDAASGQCEQQF  518 (602)
Q Consensus       451 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~------------l~s~~~dg~i~iwd~~~~~~~~~~  518 (602)
                                                   ...+.+++|+|+|++            +++|+.|++|++||..+++.+..+
T Consensus       226 -----------------------------v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~  276 (356)
T 2w18_A          226 -----------------------------QASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVM  276 (356)
T ss_dssp             ------------------------------CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEEEEEE
T ss_pred             -----------------------------eeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEE
Confidence                                         123344445555544            477899999999999999987665


Q ss_pred             -----cccCCCeeEeeecCCc-eEEEeeCCCcEEEeecCCCCceeeeecccccceEEEEecCCcEEEEEECCCCCeEEEe
Q psy12697        519 -----SFHSAPALDVDWQSNT-SFASCSTDQHIHVCKLHSDKPVKSFEGHTTGQLVHSYKGTGGIFEVCWNSRGDKVGAS  592 (602)
Q Consensus       519 -----~~~~~~v~~~~~s~~~-~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~  592 (602)
                           .+|...+.+..++  + .+++++.|++|+|||+.+++.+.++.+|..          ..+..++|||||++|++|
T Consensus       277 ~~~~p~Gh~~~~lsg~~s--g~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~----------~vvs~vafSPDG~~LaSG  344 (356)
T 2w18_A          277 LYCLPPGQAGRFLEGDVK--DHCAAAILTSGTIAIWDLLLGQCTALLPPVSD----------QHWSFVKWSGTDSHLLAG  344 (356)
T ss_dssp             EECCCTTCCCCEEEEEEE--TTEEEEEETTSCEEEEETTTCSEEEEECCC------------CCCCEEEECSSSSEEEEE
T ss_pred             EeeccCCCcceeEccccC--CCEEEEEcCCCcEEEEECCCCcEEEEecCCCC----------CeEEEEEECCCCCEEEEE
Confidence                 3666665555554  5 899999999999999999999998887751          234468999999999999


Q ss_pred             ccCCeEEee
Q psy12697        593 ASDGSVFKN  601 (602)
Q Consensus       593 ~~dg~v~i~  601 (602)
                      +.|++|+|+
T Consensus       345 S~D~TIklW  353 (356)
T 2w18_A          345 QKDGNIFVY  353 (356)
T ss_dssp             CTTSCEEEE
T ss_pred             ECCCcEEEe
Confidence            999999985

>2xtc_A F-box-like/WD repeat-containing protein TBL1X; transcription; 2.22A {Homo sapiens} PDB: 2xte_A 2xtd_A

Probab=100.00  E-value=3.3e-35  Score=202.74  Aligned_cols=87  Identities=79%  Similarity=1.197  Sum_probs=69.4

Q ss_pred             CcccccchhhhhhhhhhhcCceeeeeccccccCCccCCCCCCcCCchhHHHHHHhhceeEEEeeeeCCCCcc--cccccc
Q psy12697          1 MTYSSDEVNFLVYRYLQESGFQHSAYTFGIESHISQSNIDGALVPPAALLSIIQKGLQYTEAEISVGENGQE--QRPTES   78 (602)
Q Consensus         1 ~~~~s~e~n~li~ryL~e~g~~~~a~~~~~e~~~~~~~~~~~~~~~~~li~~~qk~l~~~~~e~~~~~~~~~--~~~~~~   78 (602)
                      ||||||||||||||||||+||.||||+|++|+++.+.+.+...||||+||++|||||+|.++|.++.+++..  .++.++
T Consensus         1 msitsdevN~LI~RYLqEsGf~hsAf~f~~Es~i~~~~~~~~~VppgaLVsllQKGL~Y~~~E~~~~~~g~~~~~~~~~~   80 (90)
T 2xtc_A            1 MSITSDEVNFLVYRYLQESGFSHSAFTFGIESHISQSNINGTLVPPAALISILQKGLQYVEAEISINEDGTVFDGRPIES   80 (90)
T ss_dssp             -CCCHHHHHHHHHHHHHHTTCHHHHHHHHHHTTGGGSCCCGGGSCTTHHHHHHHHHHHHHHHHHHTTSSCCTTCC-----
T ss_pred             CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhcCCccccccccCCcchHHHHHHHHHHHHHHHHHhcCCCCccCCCCCCc
Confidence            999999999999999999999999999999999999999999999999999999999999999999998774  456677


Q ss_pred             ccccccchh
Q psy12697         79 LSLIDAVLP   87 (602)
Q Consensus        79 ~~~~~~~~~   87 (602)
                      +++++++.|
T Consensus        81 ~~ll~~~~~   89 (90)
T 2xtc_A           81 LSLIDAVMP   89 (90)
T ss_dssp             ---------
T ss_pred             hhhhhhccc
Confidence            887776544

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.6e-31  Score=280.28  Aligned_cols=247  Identities=23%  Similarity=0.397  Sum_probs=210.7

Q ss_pred             cCCCCceeEEeeCCCCCeEEEEeCCCeEEEEcCC---CcceeecccccCCeEEEEEccC--CCEEEEEecCCcEEEEeCC
Q psy12697        277 VPSNKDVTSLDWNNNGSFLATGSYDGYARIWTSD---GSLKSTLGQHKGPIFALKWNKR--GNYILSAGVDKTTIIWDAA  351 (602)
Q Consensus       277 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~---~~~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~dg~i~~wd~~  351 (602)
                      ..|.+.|++++|+|++++|++|+.||.|++|+..   +.....+.+|...|.+++|+|+  +++|++++.||.|++||+.
T Consensus         6 ~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~   85 (753)
T 3jro_A            6 NAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEE   85 (753)
T ss_dssp             --CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEE
T ss_pred             ccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECC
Confidence            3467899999999999999999999999999975   3456678899999999999988  9999999999999999999


Q ss_pred             CCc--eeEEeeeccCCeeeeeccCC---CeEEEeeCCCeEEEEEcCCC--ceeeEeccCCCCeEEEEECC----------
Q psy12697        352 SGQ--CEQQFSFHSAPALDVDWQSN---TSFASCSTDQHIHVCKLHSD--KPVKSFEGHTNEVNAIKWDP----------  414 (602)
Q Consensus       352 ~~~--~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~i~i~d~~~~--~~~~~~~~~~~~i~~~~~~~----------  414 (602)
                      +++  ....+..|...+.++.|+|+   ..+++++.||.|++||+.++  .....+.+|...|.+++|+|          
T Consensus        86 ~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~  165 (753)
T 3jro_A           86 NGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHN  165 (753)
T ss_dssp             TTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC--------
T ss_pred             CCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCcccccccccc
Confidence            987  66777889999999999996   57999999999999999887  34556778999999999999          


Q ss_pred             ---CCCEEEEEECCCeEEEEeCCCCeeeEeeccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccC
Q psy12697        415 ---QGLLLASCSDDMTLKIWSLDKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKR  491 (602)
Q Consensus       415 ---~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~  491 (602)
                         ++.+|++|+.||.|++||++++.....                              ....+.+|..+|.+++|+|+
T Consensus       166 ~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~------------------------------~~~~~~~h~~~V~~l~~sp~  215 (753)
T 3jro_A          166 GTKESRKFVTGGADNLVKIWKYNSDAQTYV------------------------------LESTLEGHSDWVRDVAWSPT  215 (753)
T ss_dssp             -CGGGCCEEEEETTSCEEEEEEETTTTEEE------------------------------EEEEECCCSSCEEEEEECCC
T ss_pred             cCCCCCEEEEEECCCeEEEEeccCCcccce------------------------------eeeeecCCCCcEEEEEeccC
Confidence               589999999999999999987532111                              11123346777888888888


Q ss_pred             ---CCEEEEEeCCCeEEEEeCCCCc-----eeeeecccCCCeeEeeecCCc-eEEEeeCCCcEEEeecCCC
Q psy12697        492 ---GNYILSAGVDKTTIIWDAASGQ-----CEQQFSFHSAPALDVDWQSNT-SFASCSTDQHIHVCKLHSD  553 (602)
Q Consensus       492 ---~~~l~s~~~dg~i~iwd~~~~~-----~~~~~~~~~~~v~~~~~s~~~-~l~~~~~d~~i~iw~~~~~  553 (602)
                         +++|++++.||.|++||+.+++     .......|...|++++|+|++ .+++++.||.|++|++.++
T Consensus       216 ~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~  286 (753)
T 3jro_A          216 VLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLE  286 (753)
T ss_dssp             CSSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCSS
T ss_pred             CCCCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCCC
Confidence               8999999999999999999874     334445688899999999999 9999999999999999854

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.97  E-value=6.5e-29  Score=251.78  Aligned_cols=323  Identities=11%  Similarity=0.135  Sum_probs=246.0

Q ss_pred             EECCCCCeEEEeeCCceEEEEecCCceeEEEeeccCceEEEEeCCCCCCCCCCCCccccccccccCCcceEeeCCCcceE
Q psy12697        147 AFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKGTGGIFEVCWNSRGTPPNPPESMEVDASIEIPQSKATKLIGHESEVF  226 (602)
Q Consensus       147 ~~s~d~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~v~  226 (602)
                      +|+|++.++++++.|++|.+||..+++++..+..                                       ++.  +.
T Consensus       144 ~~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~---------------------------------------g~~--~~  182 (543)
T 1nir_A          144 DLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDT---------------------------------------GYA--VH  182 (543)
T ss_dssp             CCCGGGEEEEEEGGGTEEEEEETTTCCEEEEEEC---------------------------------------STT--EE
T ss_pred             ccCCCCEEEEEEcCCCeEEEEECCCceEEEEEec---------------------------------------Ccc--cc
Confidence            4899999999999999999999999998865531                                       233  78


Q ss_pred             EEEEcCCCCEEEEeeCCCcEEEEeC--CCCCCCCCccceEEEEEEecCCCcccCCCCceeEEeeCC----CCCeEEEEeC
Q psy12697        227 ICAWNPVKDFLASGSGDSTARIWDM--TDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNN----NGSFLATGSY  300 (602)
Q Consensus       227 ~~~~~~~~~~l~s~~~dg~i~iw~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~----~~~~l~~~~~  300 (602)
                      .++|+|++++|++++.|++|++||+  .+++..     . .           .+....+..++|+|    +|+++++++.
T Consensus       183 ~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~-----~-~-----------i~~g~~p~~va~sp~~~~dg~~l~v~~~  245 (543)
T 1nir_A          183 ISRMSASGRYLLVIGRDARIDMIDLWAKEPTKV-----A-E-----------IKIGIEARSVESSKFKGYEDRYTIAGAY  245 (543)
T ss_dssp             EEEECTTSCEEEEEETTSEEEEEETTSSSCEEE-----E-E-----------EECCSEEEEEEECCSTTCTTTEEEEEEE
T ss_pred             eEEECCCCCEEEEECCCCeEEEEECcCCCCcEE-----E-E-----------EecCCCcceEEeCCCcCCCCCEEEEEEc
Confidence            8999999999999999999999999  443211     0 0           11245689999999    9999999885


Q ss_pred             -CCeEEEEcCC-Ccceeeccc----------cc-CCeEEEEEccCCCEE-EEEecCCcEEEEeCCCCceeE--EeeeccC
Q psy12697        301 -DGYARIWTSD-GSLKSTLGQ----------HK-GPIFALKWNKRGNYI-LSAGVDKTTIIWDAASGQCEQ--QFSFHSA  364 (602)
Q Consensus       301 -dg~i~i~~~~-~~~~~~~~~----------~~-~~i~~~~~~~~~~~l-~~~~~dg~i~~wd~~~~~~~~--~~~~~~~  364 (602)
                       ++.|.+||.. ++.+..+..          |. ..+..+.++|++..+ ++...++.|.+||..+.+.+.  .+. +..
T Consensus       246 ~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~-~~~  324 (543)
T 1nir_A          246 WPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIG-AAP  324 (543)
T ss_dssp             ESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEE-CCS
T ss_pred             cCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEec-cCc
Confidence             8999999976 445554443          22 378899999977654 566678999999998876544  332 455


Q ss_pred             CeeeeeccCCCe-EEE-eeCCCeEEEEEcCCCceeeEecc----CCCCeEEEEECCC-CCEEEEEE-CCCeEEEEeCCC-
Q psy12697        365 PALDVDWQSNTS-FAS-CSTDQHIHVCKLHSDKPVKSFEG----HTNEVNAIKWDPQ-GLLLASCS-DDMTLKIWSLDK-  435 (602)
Q Consensus       365 ~~~~~~~~~~~~-~~~-~~~~~~i~i~d~~~~~~~~~~~~----~~~~i~~~~~~~~-~~~l~~~~-~dg~i~iwd~~~-  435 (602)
                      .+..+.|+|++. +++ +..++.|.+||..+++.+..+..    |.+....+ ++|+ +..++++. .|++|.+||+.+ 
T Consensus       325 ~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~  403 (543)
T 1nir_A          325 FLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPK  403 (543)
T ss_dssp             SCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTT
T ss_pred             CccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCC
Confidence            678899999876 444 44589999999999998887764    55444343 4776 66677765 589999999987 


Q ss_pred             ------CeeeEeeccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEe-------CCC
Q psy12697        436 ------DNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAG-------VDK  502 (602)
Q Consensus       436 ------~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~-------~dg  502 (602)
                            .++++++..+                                  ...+..++++|+|++|++++       .++
T Consensus       404 ~~~~~~~~~v~~l~~~----------------------------------g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~  449 (543)
T 1nir_A          404 NHPQYAWKKVAELQGQ----------------------------------GGGSLFIKTHPKSSHLYVDTTFNPDARISQ  449 (543)
T ss_dssp             TCTTTBTSEEEEEECS----------------------------------CSCCCCEECCTTCCEEEECCTTCSSHHHHT
T ss_pred             CCchhcCeEEEEEEcC----------------------------------CCCceEEEcCCCCCcEEEecCCCCCcccCc
Confidence                  5666665543                                  34556677888999999987       377


Q ss_pred             eEEEEeCCCCcee-eee--------cccCCCeeEeeecCCc-eEEEe-----eCCCcEEEeecCCCCceeeeeccc
Q psy12697        503 TTIIWDAASGQCE-QQF--------SFHSAPALDVDWQSNT-SFASC-----STDQHIHVCKLHSDKPVKSFEGHT  563 (602)
Q Consensus       503 ~i~iwd~~~~~~~-~~~--------~~~~~~v~~~~~s~~~-~l~~~-----~~d~~i~iw~~~~~~~~~~~~~~~  563 (602)
                      +|.+||+.+++.. ..+        ..+...+..+.|+|+| .++++     +.|+.|.|||..+++++.+++...
T Consensus       450 ~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i~~~~  525 (543)
T 1nir_A          450 SVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKAVVKDPR  525 (543)
T ss_dssp             CEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEETTTTEEEEEECCTT
T ss_pred             eEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeEEEEECCCceEEEeecCCC
Confidence            9999999999877 443        3456789999999999 55544     247999999999998888777543

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.97  E-value=2.5e-28  Score=247.52  Aligned_cols=330  Identities=12%  Similarity=0.097  Sum_probs=244.2

Q ss_pred             eccceeeeecccceeeeeeeccCCceEEEEECCCCCeEEEeeCCceEEEEec--CCceeEEEeeccCceEEEEeCCCCCC
Q psy12697        118 HRLTLPLWDVERGECLNTLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSA--RTGQLVHSYKGTGGIFEVCWNSRGTP  195 (602)
Q Consensus       118 ~~~~i~vwd~~~~~~~~~l~~h~~~V~~~~~s~d~~~l~s~~~d~~v~iwd~--~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (602)
                      .+++|.+||..+++++.++..+.. +.+++|+|||++|++++.|++|.+||+  .+++.+..++                
T Consensus       157 ~d~~V~v~D~~t~~~~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~----------------  219 (543)
T 1nir_A          157 DAGQIALVDGDSKKIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIK----------------  219 (543)
T ss_dssp             GGTEEEEEETTTCCEEEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEE----------------
T ss_pred             CCCeEEEEECCCceEEEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEe----------------
Confidence            357999999999999999984433 899999999999999999999999999  8888775543                


Q ss_pred             CCCCCCccccccccccCCcceEeeCCCcceEEEEEcC----CCCEEEEeeC-CCcEEEEeCCCCCCCCCccceEEEEEEe
Q psy12697        196 PNPPESMEVDASIEIPQSKATKLIGHESEVFICAWNP----VKDFLASGSG-DSTARIWDMTDSTKKDPKELQIVLRHCI  270 (602)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~----~~~~l~s~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~  270 (602)
                                               +...+..++|+|    +++++++++. +++|.+||..+.+........     ..
T Consensus       220 -------------------------~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~-----g~  269 (543)
T 1nir_A          220 -------------------------IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTR-----GM  269 (543)
T ss_dssp             -------------------------CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECC-----EE
T ss_pred             -------------------------cCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeeccc-----Cc
Confidence                                     344578999999    9999999885 899999998876543211110     00


Q ss_pred             cCCCcccCCCCceeEEeeCCCCCe-EEEEeCCCeEEEEcCCC-ccee-ecccccCCeEEEEEccCCCEEEEEe-cCCcEE
Q psy12697        271 SKGGTEVPSNKDVTSLDWNNNGSF-LATGSYDGYARIWTSDG-SLKS-TLGQHKGPIFALKWNKRGNYILSAG-VDKTTI  346 (602)
Q Consensus       271 ~~~~~~~~~~~~i~~~~~~~~~~~-l~~~~~dg~i~i~~~~~-~~~~-~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~  346 (602)
                      ............+.++.++|++.. +++...++.|.+||... .... ....+...+.++.|+|+++++++++ .+++|.
T Consensus       270 ~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~l~va~~~~~~v~  349 (543)
T 1nir_A          270 TVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRYFMTAANNSNKVA  349 (543)
T ss_dssp             CSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSCEEEEEEGGGTEEE
T ss_pred             ccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEeccCcCccCceECCCCCEEEEEecCCCeEE
Confidence            000000112347899999997665 55667789999999763 2221 1223566788999999999877655 588999


Q ss_pred             EEeCCCCceeEEeee----ccCCeeeeeccCC-CeE-EEee-CCCeEEEEEcCC-------CceeeEeccCCCCeEEEEE
Q psy12697        347 IWDAASGQCEQQFSF----HSAPALDVDWQSN-TSF-ASCS-TDQHIHVCKLHS-------DKPVKSFEGHTNEVNAIKW  412 (602)
Q Consensus       347 ~wd~~~~~~~~~~~~----~~~~~~~~~~~~~-~~~-~~~~-~~~~i~i~d~~~-------~~~~~~~~~~~~~i~~~~~  412 (602)
                      +||+.++++...+..    |......+ ++|+ +.+ +++. .+++|.+||+.+       .+.+.++.+|...+..+++
T Consensus       350 v~D~~tg~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~  428 (543)
T 1nir_A          350 VIDSKDRRLSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKT  428 (543)
T ss_dssp             EEETTTTEEEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEEC
T ss_pred             EEECCCCeEEEeeccCCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEc
Confidence            999999999888765    32222232 3454 544 4443 579999999998       8899999999988999999


Q ss_pred             CCCCCEEEEEE-------CCCeEEEEeCCCCeee-EeeccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeE
Q psy12697        413 DPQGLLLASCS-------DDMTLKIWSLDKDNCV-HDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIF  484 (602)
Q Consensus       413 ~~~~~~l~~~~-------~dg~i~iwd~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  484 (602)
                      +|++++|++++       .+++|.+||+.+++.. ..+....                          ...+..+...+.
T Consensus       429 ~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~--------------------------~~~~~~~~~~~~  482 (543)
T 1nir_A          429 HPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAE--------------------------WADLGEGAKRVV  482 (543)
T ss_dssp             CTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHH--------------------------HHCCCSSCCEEE
T ss_pred             CCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechh--------------------------hcccCCCCCceE
Confidence            99999999987       2679999999988755 2221000                          001123456778


Q ss_pred             EEEEccCCCEEEEEe-----CCCeEEEEeCCCCceeeeeccc
Q psy12697        485 ALKWNKRGNYILSAG-----VDKTTIIWDAASGQCEQQFSFH  521 (602)
Q Consensus       485 ~i~~s~~~~~l~s~~-----~dg~i~iwd~~~~~~~~~~~~~  521 (602)
                      .+.|+|+|++++.+.     .|+.|.|||..+++++.+++.+
T Consensus       483 ~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i~~~  524 (543)
T 1nir_A          483 QPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKAVVKDP  524 (543)
T ss_dssp             EEEECSSSSEEEEEEECCTTSCCEEEEEETTTTEEEEEECCT
T ss_pred             eccCCCCCCEEEEEeecCCCCCCeEEEEECCCceEEEeecCC
Confidence            888899999888663     4799999999999999888753

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.97  E-value=2.4e-28  Score=240.58  Aligned_cols=302  Identities=14%  Similarity=0.127  Sum_probs=226.0

Q ss_pred             CCcceEEEEEcCCC-CEEEEee----CCC----cEEEEeC--CCCCCCCCccceEEEEEEecCCCcccCCCCceeEEeeC
Q psy12697        221 HESEVFICAWNPVK-DFLASGS----GDS----TARIWDM--TDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWN  289 (602)
Q Consensus       221 h~~~v~~~~~~~~~-~~l~s~~----~dg----~i~iw~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  289 (602)
                      +...+....|.+.+ .++++|+    .||    .+++||+  .+++....   ...           ..+...+..++++
T Consensus        61 ~~~~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~---~~~-----------~~~~~~~~~~~~~  126 (415)
T 2hqs_A           61 SAQEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQ---NSY-----------KVNKQWLRYAGHT  126 (415)
T ss_dssp             SGGGCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEE---EEE-----------EECGGGHHHHHHH
T ss_pred             cccCcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEee---eEE-----------EcChhHHHHHHHH
Confidence            34567778898888 5666775    467    8999999  76653210   001           1123345555554


Q ss_pred             C--------------CCCeEEEEeCC------CeEEEEcCCCcceeecccccCCeEEEEEccCCCEEEEEecCC---cEE
Q psy12697        290 N--------------NGSFLATGSYD------GYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDK---TTI  346 (602)
Q Consensus       290 ~--------------~~~~l~~~~~d------g~i~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg---~i~  346 (602)
                      +              .+..++.++.+      +.|++||.++.....+..|...+.+++|+|+|++|++++.++   .|+
T Consensus       127 ~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~  206 (415)
T 2hqs_A          127 ASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALV  206 (415)
T ss_dssp             HHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTSCSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEE
T ss_pred             HHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCCCCCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEE
Confidence            3              25566666654      799999999888888888999999999999999999999875   999


Q ss_pred             EEeCCCCceeEEeeeccCCeeeeeccCCCe-EE-EeeCCC--eEEEEEcCCCceeeEeccCCCCeEEEEECCCCCEEEEE
Q psy12697        347 IWDAASGQCEQQFSFHSAPALDVDWQSNTS-FA-SCSTDQ--HIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASC  422 (602)
Q Consensus       347 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~--~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~  422 (602)
                      +||+.+++.. .+..+...+.+++|+|++. ++ +++.++  .|++||+.+++. ..+..|...+.+++|+|+|++|+++
T Consensus       207 ~~d~~tg~~~-~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~l~~~  284 (415)
T 2hqs_A          207 IQTLANGAVR-QVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPTWFPDSQNLAFT  284 (415)
T ss_dssp             EEETTTCCEE-EEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCSSCEEEEEECTTSSEEEEE
T ss_pred             EEECCCCcEE-EeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCCCcccceEECCCCCEEEEE
Confidence            9999998875 4556677899999999976 44 455554  499999998775 5677788899999999999999988


Q ss_pred             ECC-C--eEEEEeCCCCeeeEeeccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEe
Q psy12697        423 SDD-M--TLKIWSLDKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAG  499 (602)
Q Consensus       423 ~~d-g--~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~  499 (602)
                      +.+ +  .|.+||+.+++.. .+..                                  +...+.+++|+|||++|++++
T Consensus       285 s~~~g~~~i~~~d~~~~~~~-~l~~----------------------------------~~~~~~~~~~spdG~~l~~~~  329 (415)
T 2hqs_A          285 SDQAGRPQVYKVNINGGAPQ-RITW----------------------------------EGSQNQDADVSSDGKFMVMVS  329 (415)
T ss_dssp             ECTTSSCEEEEEETTSSCCE-ECCC----------------------------------SSSEEEEEEECTTSSEEEEEE
T ss_pred             ECCCCCcEEEEEECCCCCEE-EEec----------------------------------CCCcccCeEECCCCCEEEEEE
Confidence            864 4  6788888776532 2222                                  334566778888999999887


Q ss_pred             CC---CeEEEEeCCCCceeeeecccCCCeeEeeecCCc-eEEEeeCCC---cEEEeecCCCCceeeeecccccceEEEEe
Q psy12697        500 VD---KTTIIWDAASGQCEQQFSFHSAPALDVDWQSNT-SFASCSTDQ---HIHVCKLHSDKPVKSFEGHTTGQLVHSYK  572 (602)
Q Consensus       500 ~d---g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~-~l~~~~~d~---~i~iw~~~~~~~~~~~~~~~~~~~~~~~~  572 (602)
                      .+   ..|++||+.+++.. .+..+. .+.+++|+||| .|++++.++   .|++||+. ++....+..+.         
T Consensus       330 ~~~g~~~i~~~d~~~~~~~-~l~~~~-~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~-g~~~~~l~~~~---------  397 (415)
T 2hqs_A          330 SNGGQQHIAKQDLATGGVQ-VLSSTF-LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTD-GRFKARLPATD---------  397 (415)
T ss_dssp             ECSSCEEEEEEETTTCCEE-ECCCSS-SCEEEEECTTSSEEEEEEEETTEEEEEEEETT-SCCEEECCCSS---------
T ss_pred             CcCCceEEEEEECCCCCEE-EecCCC-CcCCeEEcCCCCEEEEEEcCCCccEEEEEECC-CCcEEEeeCCC---------
Confidence            64   68999999988874 455454 89999999999 888888777   79999986 44444554443         


Q ss_pred             cCCcEEEEEECCCCC
Q psy12697        573 GTGGIFEVCWNSRGD  587 (602)
Q Consensus       573 ~~~~i~~l~~spdg~  587 (602)
                        +.|.+++|+|.-.
T Consensus       398 --~~v~~~~~~~~~~  410 (415)
T 2hqs_A          398 --GQVKFPAWSPYLH  410 (415)
T ss_dssp             --SEEEEEEECCCCC
T ss_pred             --CCCcCCccccccc
Confidence              7799999999754

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.96  E-value=4.7e-28  Score=238.42  Aligned_cols=300  Identities=13%  Similarity=0.142  Sum_probs=227.2

Q ss_pred             CceEEEEECCCCC-eEEEee----CCc----eEEEEec--CCceeEEEeeccCceEEEEeCCCCCCCCCCCCcccccccc
Q psy12697        141 EPVYSVAFSPDGK-FLASGS----FDK----CVHIWSA--RTGQLVHSYKGTGGIFEVCWNSRGTPPNPPESMEVDASIE  209 (602)
Q Consensus       141 ~~V~~~~~s~d~~-~l~s~~----~d~----~v~iwd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (602)
                      ..+...+|++.|. ++++|+    .||    +|+|||+  .+++.+..                                
T Consensus        63 ~~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~--------------------------------  110 (415)
T 2hqs_A           63 QEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQ--------------------------------  110 (415)
T ss_dssp             GGCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEE--------------------------------
T ss_pred             cCcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEee--------------------------------
Confidence            4566677877765 666776    467    9999999  89887633                                


Q ss_pred             ccCCcceEeeCCCcceEEEEEcC--------------CCCEEEEeeCC------CcEEEEeCCCCCCCCCccceEEEEEE
Q psy12697        210 IPQSKATKLIGHESEVFICAWNP--------------VKDFLASGSGD------STARIWDMTDSTKKDPKELQIVLRHC  269 (602)
Q Consensus       210 ~~~~~~~~l~~h~~~v~~~~~~~--------------~~~~l~s~~~d------g~i~iw~~~~~~~~~~~~~~~~~~~~  269 (602)
                            ..+.+|...+..+++++              .+..++.++.+      +.|++||++....      ..+..  
T Consensus       111 ------~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g~~~------~~l~~--  176 (415)
T 2hqs_A          111 ------NSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDGYNQ------FVVHR--  176 (415)
T ss_dssp             ------EEEEECGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTSCSC------EEEEE--
T ss_pred             ------eEEEcChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCCCCC------EEEeC--
Confidence                  22445555555555543              25566666554      7999999974321      22222  


Q ss_pred             ecCCCcccCCCCceeEEeeCCCCCeEEEEeCCC---eEEEEcCCCcceeecccccCCeEEEEEccCCCEEE-EEecCCc-
Q psy12697        270 ISKGGTEVPSNKDVTSLDWNNNGSFLATGSYDG---YARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYIL-SAGVDKT-  344 (602)
Q Consensus       270 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg---~i~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~dg~-  344 (602)
                               +...+.+++|+|+|+.|++++.++   .|++||+.+.....+..|...+.+++|+|+|++|+ +++.++. 
T Consensus       177 ---------~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~l~~~~~~~~~~~~spdg~~la~~~~~~g~~  247 (415)
T 2hqs_A          177 ---------SPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSL  247 (415)
T ss_dssp             ---------ESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEECCSSCEEEEEECTTSSEEEEEECTTSSC
T ss_pred             ---------CCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEEEeecCCCcccCEEEcCCCCEEEEEEecCCCc
Confidence                     257899999999999999999875   99999998666667777888999999999999888 6665554 


Q ss_pred             -EEEEeCCCCceeEEeeeccCCeeeeeccCCCe-EEEeeC-CC--eEEEEEcCCCceeeEeccCCCCeEEEEECCCCCEE
Q psy12697        345 -TIIWDAASGQCEQQFSFHSAPALDVDWQSNTS-FASCST-DQ--HIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLL  419 (602)
Q Consensus       345 -i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~--~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l  419 (602)
                       |.+||+.+++. ..+..+...+..+.|+|++. +++++. ++  .|++||+.+++. ..+..+...+.+++|+|+|++|
T Consensus       248 ~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdG~~l  325 (415)
T 2hqs_A          248 NLYVMDLASGQI-RQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAP-QRITWEGSQNQDADVSSDGKFM  325 (415)
T ss_dssp             EEEEEETTTCCE-EECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCC-EECCCSSSEEEEEEECTTSSEE
T ss_pred             eEEEEECCCCCE-EeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCE-EEEecCCCcccCeEECCCCCEE
Confidence             99999998876 45666778899999999976 565654 34  688889988764 4455677789999999999999


Q ss_pred             EEEECC---CeEEEEeCCCCeeeEeeccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEE
Q psy12697        420 ASCSDD---MTLKIWSLDKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYIL  496 (602)
Q Consensus       420 ~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~  496 (602)
                      ++++.+   ..|++||+.+++.. .+..                                  +. .+.+++|+|||++|+
T Consensus       326 ~~~~~~~g~~~i~~~d~~~~~~~-~l~~----------------------------------~~-~~~~~~~spdg~~l~  369 (415)
T 2hqs_A          326 VMVSSNGGQQHIAKQDLATGGVQ-VLSS----------------------------------TF-LDETPSLAPNGTMVI  369 (415)
T ss_dssp             EEEEECSSCEEEEEEETTTCCEE-ECCC----------------------------------SS-SCEEEEECTTSSEEE
T ss_pred             EEEECcCCceEEEEEECCCCCEE-EecC----------------------------------CC-CcCCeEEcCCCCEEE
Confidence            988864   58999999887653 2222                                  22 567788888999999


Q ss_pred             EEeCCC---eEEEEeCCCCceeeeecccCCCeeEeeecCCc
Q psy12697        497 SAGVDK---TTIIWDAASGQCEQQFSFHSAPALDVDWQSNT  534 (602)
Q Consensus       497 s~~~dg---~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~  534 (602)
                      +++.++   .|++||+. +.....+..|.+.|.+++|+|..
T Consensus       370 ~~s~~~~~~~l~~~d~~-g~~~~~l~~~~~~v~~~~~~~~~  409 (415)
T 2hqs_A          370 YSSSQGMGSVLNLVSTD-GRFKARLPATDGQVKFPAWSPYL  409 (415)
T ss_dssp             EEEEETTEEEEEEEETT-SCCEEECCCSSSEEEEEEECCCC
T ss_pred             EEEcCCCccEEEEEECC-CCcEEEeeCCCCCCcCCcccccc
Confidence            888877   89999987 66677888899999999999965

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.96  E-value=4.3e-28  Score=258.36  Aligned_cols=348  Identities=10%  Similarity=0.088  Sum_probs=235.9

Q ss_pred             ceEEEEECCCCCeEEEeeCCceEEEEecCCceeEEEeeccCceEEEEeCCCCCCCCCCCCccccccccccCCcceEeeCC
Q psy12697        142 PVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKGTGGIFEVCWNSRGTPPNPPESMEVDASIEIPQSKATKLIGH  221 (602)
Q Consensus       142 ~V~~~~~s~d~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h  221 (602)
                      .+.+++|+|||+++++ +.||+|++||+.+++....+                                        .+|
T Consensus        18 ~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~~~~----------------------------------------~~~   56 (723)
T 1xfd_A           18 HDPEAKWISDTEFIYR-EQKGTVRLWNVETNTSTVLI----------------------------------------EGK   56 (723)
T ss_dssp             CCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEE----------------------------------------CTT
T ss_pred             cccccEEcCCCcEEEE-eCCCCEEEEECCCCcEEEEe----------------------------------------ccc
Confidence            3567899999998876 78999999999998875433                                        233


Q ss_pred             Cc---ceEEEEEcCCCCEEEEeeCC---------CcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEeeC
Q psy12697        222 ES---EVFICAWNPVKDFLASGSGD---------STARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWN  289 (602)
Q Consensus       222 ~~---~v~~~~~~~~~~~l~s~~~d---------g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  289 (602)
                      ..   .|.+++|+|||++|++++.+         +.+.+||+.+++...   +.           ....+...+..++|+
T Consensus        57 ~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~---l~-----------~~~~~~~~~~~~~~S  122 (723)
T 1xfd_A           57 KIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQS---LD-----------PPEVSNAKLQYAGWG  122 (723)
T ss_dssp             TTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEE---CC-----------CTTCCSCCCSBCCBC
T ss_pred             cccccccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCceEe---cc-----------CCccccccccccEEC
Confidence            33   48899999999999999775         778899998875410   00           001123458899999


Q ss_pred             CCCCeEEEEeCCCeEEEEcCCCc-ceeecccccCC------------------eEEEEEccCCCEEEEEecC-CcEEEEe
Q psy12697        290 NNGSFLATGSYDGYARIWTSDGS-LKSTLGQHKGP------------------IFALKWNKRGNYILSAGVD-KTTIIWD  349 (602)
Q Consensus       290 ~~~~~l~~~~~dg~i~i~~~~~~-~~~~~~~~~~~------------------i~~~~~~~~~~~l~~~~~d-g~i~~wd  349 (602)
                      |||+.|+.++. +.|++|+..+. .......+...                  +.+++|+|||++|++++.+ +.+.+|+
T Consensus       123 PdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~  201 (723)
T 1xfd_A          123 PKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIME  201 (723)
T ss_dssp             SSTTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEE
T ss_pred             CCCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEE
Confidence            99999999886 78999998754 33333333333                  3789999999999988755 4677777


Q ss_pred             CCCCceeEEeeeccCCeeeeeccCCCeEEEeeCCCeEEEEEcCCCceeeEeccC------CCCeEEEEECCCCCEEEEEE
Q psy12697        350 AASGQCEQQFSFHSAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEGH------TNEVNAIKWDPQGLLLASCS  423 (602)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~------~~~i~~~~~~~~~~~l~~~~  423 (602)
                      +......     ....+..+.|.+++..   ..+..|++||+.+++....+..+      ...+..++|+|||++|++.+
T Consensus       202 ~~~~~~~-----~~~~~~~~~~~~~G~~---~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~  273 (723)
T 1xfd_A          202 LPTYTGS-----IYPTVKPYHYPKAGSE---NPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWL  273 (723)
T ss_dssp             ECCCSSS-----SSCCCEEEECCBTTSC---CCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEE
T ss_pred             eeccCCc-----CCCcceeccCCCCCCC---CCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEE
Confidence            5432211     1223455666554431   23458999999988865666654      56789999999999987765


Q ss_pred             C----CCeEEEEeCCCCeeeEeeccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCe----EEEEEccCCCEE
Q psy12697        424 D----DMTLKIWSLDKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPI----FALKWNKRGNYI  495 (602)
Q Consensus       424 ~----dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v----~~i~~s~~~~~l  495 (602)
                      .    +..|++||+.+++....+..+.                                 ...+    ..++|||||++|
T Consensus       274 ~~~~~~~~i~~~d~~~g~~~~~~~~~~---------------------------------~~~~~~~~~~~~~spdg~~l  320 (723)
T 1xfd_A          274 NRAQNVSILTLCDATTGVCTKKHEDES---------------------------------EAWLHRQNEEPVFSKDGRKF  320 (723)
T ss_dssp             ETTSCEEEEEEEETTTCCEEEEEEEEC---------------------------------SSCCCCCCCCCEECTTSCSE
T ss_pred             cCCCCeEEEEEEeCCCCcceEEEEecc---------------------------------CCEEeccCCCceEcCCCCeE
Confidence            3    3579999999887655443211                                 1111    256888999977


Q ss_pred             EE--EeCCC------eEEEEe-CCCCc--eeeeecccCCCeeE-eeecCCc-eEEEeeCC---CcEEEeecCCCC--cee
Q psy12697        496 LS--AGVDK------TTIIWD-AASGQ--CEQQFSFHSAPALD-VDWQSNT-SFASCSTD---QHIHVCKLHSDK--PVK  557 (602)
Q Consensus       496 ~s--~~~dg------~i~iwd-~~~~~--~~~~~~~~~~~v~~-~~~s~~~-~l~~~~~d---~~i~iw~~~~~~--~~~  557 (602)
                      +.  +..++      .|++|| ..+++  +...+..+...+.. ++|+||| .|+..+.+   +.+++|++....  ...
T Consensus       321 ~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~  400 (723)
T 1xfd_A          321 FFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQ  400 (723)
T ss_dssp             EEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCCB
T ss_pred             EEEEecccCCCcceeEEEEEeccCCCCccceeEeecCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCCCCCCcc
Confidence            75  45566      577888 44444  14555544444554 6999999 77665554   789999986432  222


Q ss_pred             eeecccccceEEEEecCCcEEEEEECCCCCeEEEecc
Q psy12697        558 SFEGHTTGQLVHSYKGTGGIFEVCWNSRGDKVGASAS  594 (602)
Q Consensus       558 ~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~  594 (602)
                      .+...        +.....+..++|+|||++|+....
T Consensus       401 ~l~~~--------~~~~~~~~~~~~spdg~~l~~~~~  429 (723)
T 1xfd_A          401 CLSCD--------LVENCTYFSASFSHSMDFFLLKCE  429 (723)
T ss_dssp             CSSTT--------SSSSCCCCEEEECTTSSEEEEECC
T ss_pred             eeccc--------ccCCCCeEEEEECCCCCEEEEEcc
Confidence            22210        001245788999999998887544

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.96  E-value=4.2e-27  Score=251.36  Aligned_cols=342  Identities=12%  Similarity=0.142  Sum_probs=236.9

Q ss_pred             CCceEEEEECCCCCeEEEeeC-Cc-----eEEEEecCCceeEEEeeccCceEEEEeCCCCCCCCCCCCccccccccccCC
Q psy12697        140 TEPVYSVAFSPDGKFLASGSF-DK-----CVHIWSARTGQLVHSYKGTGGIFEVCWNSRGTPPNPPESMEVDASIEIPQS  213 (602)
Q Consensus       140 ~~~V~~~~~s~d~~~l~s~~~-d~-----~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  213 (602)
                      ...|.+++|||||++|++++. |+     .|.+||+.+++....+......      +++..+.....         ...
T Consensus        36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~------~~~~~~~~~~~---------~~~  100 (741)
T 2ecf_A           36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVL------PGTETLSDEEK---------ARR  100 (741)
T ss_dssp             CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC-----------------------------
T ss_pred             CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcc------cccccccchhh---------hhh
Confidence            456899999999999999998 88     9999999999876655432111      11111000000         000


Q ss_pred             cceEeeCCCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCC---CCCCCccceEEEEEEecCCCcccCCCCceeEEeeCC
Q psy12697        214 KATKLIGHESEVFICAWNPVKDFLASGSGDSTARIWDMTDS---TKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNN  290 (602)
Q Consensus       214 ~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  290 (602)
                      ....+ .....|.+++|+|||++|++++. +.|.+||+.++   ....                 ...+...+.+++|+|
T Consensus       101 ~~~~~-~~~~~v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~-----------------l~~~~~~~~~~~~SP  161 (741)
T 2ecf_A          101 ERQRI-AAMTGIVDYQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQ-----------------LTHGEGFATDAKLSP  161 (741)
T ss_dssp             -------CCEESCCCEECTTSSEEEEEET-TEEEEEESSSCSTTSCCB-----------------CCCSSSCEEEEEECT
T ss_pred             hhhhh-ccccCcceeEECCCCCEEEEEeC-CcEEEEECCCCCcceEEE-----------------cccCCcccccccCCC
Confidence            00000 01245788999999999999887 99999999877   3211                 112246799999999


Q ss_pred             CCCeEEEEeCCCeEEEEcCCCcceeecc-cccCC----------------eEEEEEccCCCEEEEEecCC----------
Q psy12697        291 NGSFLATGSYDGYARIWTSDGSLKSTLG-QHKGP----------------IFALKWNKRGNYILSAGVDK----------  343 (602)
Q Consensus       291 ~~~~l~~~~~dg~i~i~~~~~~~~~~~~-~~~~~----------------i~~~~~~~~~~~l~~~~~dg----------  343 (602)
                      ||++|++++ ++.|++||+.+.....+. .+...                +..+.|+|||++|++++.|+          
T Consensus       162 DG~~la~~~-~~~i~~~d~~~g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~  240 (741)
T 2ecf_A          162 KGGFVSFIR-GRNLWVIDLASGRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYE  240 (741)
T ss_dssp             TSSEEEEEE-TTEEEEEETTTTEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEE
T ss_pred             CCCEEEEEe-CCcEEEEecCCCCEEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCC
Confidence            999999887 468999998765444333 23222                47899999999999988765          


Q ss_pred             -----------------------cEEEEeCCC-CceeEEee--eccCCeeeeeccCCCe-EEEee-----CCCeEEEEEc
Q psy12697        344 -----------------------TTIIWDAAS-GQCEQQFS--FHSAPALDVDWQSNTS-FASCS-----TDQHIHVCKL  391 (602)
Q Consensus       344 -----------------------~i~~wd~~~-~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~-----~~~~i~i~d~  391 (602)
                                             .|.+||+.+ ++......  .+...+..+.| |++. ++++.     .+..|++||+
T Consensus       241 ~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~  319 (741)
T 2ecf_A          241 VYADRTDVIEQRYPAAGDANVQVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTL  319 (741)
T ss_dssp             ECSSCEEEEEEECCBTTSCCCEEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEET
T ss_pred             CCCCcccceEeecCCCCCCCCeeEEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEEC
Confidence                                   789999988 77654432  25567889999 8865 44433     2568999999


Q ss_pred             CCCceeeEeccCCC----CeEEEEECCCCCEEEEEECCCeEEEEeCC-CCeeeEeeccccccEEEEEECCCCCCCCCCCc
Q psy12697        392 HSDKPVKSFEGHTN----EVNAIKWDPQGLLLASCSDDMTLKIWSLD-KDNCVHDLQAHNKEIYTIKWSPTGPETSNPNM  466 (602)
Q Consensus       392 ~~~~~~~~~~~~~~----~i~~~~~~~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  466 (602)
                      .+++....+..+..    .+..++|+|||+++++++.||.++||.++ ++. ...+..                      
T Consensus       320 ~~g~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~----------------------  376 (741)
T 2ecf_A          320 ASNQQRVLAHETSPTWVPLHNSLRFLDDGSILWSSERTGFQHLYRIDSKGK-AAALTH----------------------  376 (741)
T ss_dssp             TTCCEEEEEEEECSSCCCCCSCCEECTTSCEEEEECTTSSCEEEEECSSSC-EEESCC----------------------
T ss_pred             CCCceEEEEEcCCCCcCCcCCceEECCCCeEEEEecCCCccEEEEEcCCCC-eeeeee----------------------
Confidence            99987777665553    45689999999999999999988888765 233 443333                      


Q ss_pred             ceeeeeeeccCCccCCeEEE-EEccCCCEEEE-EeCCC--eEEEEeCCC-CceeeeecccCCCeeEeeecCCc-eEEEee
Q psy12697        467 SLIFILKSTLGQHKGPIFAL-KWNKRGNYILS-AGVDK--TTIIWDAAS-GQCEQQFSFHSAPALDVDWQSNT-SFASCS  540 (602)
Q Consensus       467 ~~~~~~~~~~~~~~~~v~~i-~~s~~~~~l~s-~~~dg--~i~iwd~~~-~~~~~~~~~~~~~v~~~~~s~~~-~l~~~~  540 (602)
                                  +...+..+ .|+|+|+.|+. ++.++  .+++|++.. +.....+.. ...+..++|+||+ .|+...
T Consensus       377 ------------~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~g~~~~~l~~-~~~~~~~~~spdg~~l~~~~  443 (741)
T 2ecf_A          377 ------------GNWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPLQGGQPQRLSK-APGMHSASFARNASVYVDSW  443 (741)
T ss_dssp             ------------SSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEETTCCCCEECCC-SCSEEEEEECTTSSEEEEEE
T ss_pred             ------------cceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEcCCCCeeeccc-CCCceEEEECCCCCEEEEEe
Confidence                        34455555 48888887764 44455  899999864 555666665 6678899999999 666544


Q ss_pred             CC----CcEEEeecCCC
Q psy12697        541 TD----QHIHVCKLHSD  553 (602)
Q Consensus       541 ~d----~~i~iw~~~~~  553 (602)
                      .+    ..+.+|+...+
T Consensus       444 ~~~~~p~~~~l~~~~~~  460 (741)
T 2ecf_A          444 SNNSTPPQIELFRANGE  460 (741)
T ss_dssp             EETTEEEEEEEEETTSC
T ss_pred             cCCCCCCeEEEEEcCCC
Confidence            33    46888987543

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.96  E-value=3e-27  Score=252.52  Aligned_cols=328  Identities=11%  Similarity=0.102  Sum_probs=234.0

Q ss_pred             CcceEEEEEcCCCCEEEEeeC-CC-----cEEEEeCCCCCCCCCccceEEE--EEEecCCC------cccCCCCceeEEe
Q psy12697        222 ESEVFICAWNPVKDFLASGSG-DS-----TARIWDMTDSTKKDPKELQIVL--RHCISKGG------TEVPSNKDVTSLD  287 (602)
Q Consensus       222 ~~~v~~~~~~~~~~~l~s~~~-dg-----~i~iw~~~~~~~~~~~~~~~~~--~~~~~~~~------~~~~~~~~i~~~~  287 (602)
                      ...+..++|+|||++|++++. |+     .|++||+.+++...........  ...+....      ........+.+++
T Consensus        36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  115 (741)
T 2ecf_A           36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQ  115 (741)
T ss_dssp             CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCE
T ss_pred             CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeE
Confidence            456899999999999999998 88     8999999887532111000000  00000000      0000013478999


Q ss_pred             eCCCCCeEEEEeCCCeEEEEcCCCc---ceeecccccCCeEEEEEccCCCEEEEEecCCcEEEEeCCCCceeEEeeeccC
Q psy12697        288 WNNNGSFLATGSYDGYARIWTSDGS---LKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSA  364 (602)
Q Consensus       288 ~~~~~~~l~~~~~dg~i~i~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~  364 (602)
                      |+|||++|++++. +.|.+||+.+.   ....+..|...+..++|+|||++|+.++ ++.|.+||+.+++.......+..
T Consensus       116 ~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~~~~~~~~~~~  193 (741)
T 2ecf_A          116 WSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGRQMQLTADGST  193 (741)
T ss_dssp             ECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTEEEECCCCCCS
T ss_pred             ECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCCEEEeccCCcc
Confidence            9999999999887 99999999876   6677778888999999999999999887 56899999998876654443332


Q ss_pred             C----------------eeeeeccCCCe-EEEeeCCC---------------------------------eEEEEEcCC-
Q psy12697        365 P----------------ALDVDWQSNTS-FASCSTDQ---------------------------------HIHVCKLHS-  393 (602)
Q Consensus       365 ~----------------~~~~~~~~~~~-~~~~~~~~---------------------------------~i~i~d~~~-  393 (602)
                      .                +..+.|+|++. +++++.++                                 .|++||+.+ 
T Consensus       194 ~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~  273 (741)
T 2ecf_A          194 TIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQ  273 (741)
T ss_dssp             SEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTT
T ss_pred             ceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCC
Confidence            2                47789999975 66665554                                 788999988 


Q ss_pred             CceeeEec--cCCCCeEEEEECCCCCEEEEEEC-----CCeEEEEeCCCCeeeEeeccccccEEEEEECCCCCCCCCCCc
Q psy12697        394 DKPVKSFE--GHTNEVNAIKWDPQGLLLASCSD-----DMTLKIWSLDKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNM  466 (602)
Q Consensus       394 ~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~-----dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  466 (602)
                      ++......  .|...+..++| |||++|++++.     +..|++||+.+++....+..+...                  
T Consensus       274 ~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~------------------  334 (741)
T 2ecf_A          274 AQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPT------------------  334 (741)
T ss_dssp             CCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSS------------------
T ss_pred             CceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCC------------------
Confidence            77554433  46778999999 99999997764     568999999988765544332110                  


Q ss_pred             ceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCCCeEEEEeCC-CCceeeeecccCCCeeEe-eecCCc-eEE-EeeCC
Q psy12697        467 SLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAA-SGQCEQQFSFHSAPALDV-DWQSNT-SFA-SCSTD  542 (602)
Q Consensus       467 ~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~~~~v~~~-~~s~~~-~l~-~~~~d  542 (602)
                                  ....+..++|+|||+++++++.||.+.||.+. ++. ...+..|...+..+ .|+||+ .|+ +++.+
T Consensus       335 ------------~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~  401 (741)
T 2ecf_A          335 ------------WVPLHNSLRFLDDGSILWSSERTGFQHLYRIDSKGK-AAALTHGNWSVDELLAVDEKAGLAYFRAGIE  401 (741)
T ss_dssp             ------------CCCCCSCCEECTTSCEEEEECTTSSCEEEEECSSSC-EEESCCSSSCEEEEEEEETTTTEEEEEECSS
T ss_pred             ------------cCCcCCceEECCCCeEEEEecCCCccEEEEEcCCCC-eeeeeecceEEEeEeEEeCCCCEEEEEEeCC
Confidence                        01134567899999999999999977777664 345 77777788888887 599999 665 45555


Q ss_pred             C--cEEEeecCC-CCceeeeecccccceEEEEecCCcEEEEEECCCCCeEEEeccC
Q psy12697        543 Q--HIHVCKLHS-DKPVKSFEGHTTGQLVHSYKGTGGIFEVCWNSRGDKVGASASD  595 (602)
Q Consensus       543 ~--~i~iw~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~d  595 (602)
                      +  .++||++.. +.....+.            ....+..++|||||++|+....+
T Consensus       402 ~~~~~~l~~~~~~g~~~~~l~------------~~~~~~~~~~spdg~~l~~~~~~  445 (741)
T 2ecf_A          402 SARESQIYAVPLQGGQPQRLS------------KAPGMHSASFARNASVYVDSWSN  445 (741)
T ss_dssp             CTTCBEEEEEETTCCCCEECC------------CSCSEEEEEECTTSSEEEEEEEE
T ss_pred             CCceEEEEEEEcCCCCeeecc------------cCCCceEEEECCCCCEEEEEecC
Confidence            5  899999854 33333332            23568899999999998876543

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.95  E-value=2.2e-25  Score=236.70  Aligned_cols=344  Identities=13%  Similarity=0.099  Sum_probs=224.2

Q ss_pred             eeeeecccceee-eeeeccC-----------------CceEEEEECCCCCeEEEeeCCceEEEEecCCceeEEEeeccCc
Q psy12697        122 LPLWDVERGECL-NTLTRHT-----------------EPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKGTGG  183 (602)
Q Consensus       122 i~vwd~~~~~~~-~~l~~h~-----------------~~V~~~~~s~d~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~  183 (602)
                      | +||+.+++.+ ..+..|.                 ..|.+++|||| +.++.+ .++.|.+||+.+++...       
T Consensus        46 i-~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~~~~~~-~~~~i~~~d~~~~~~~~-------  115 (706)
T 2z3z_A           46 L-VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-GLVVLF-TQGGLVGFDMLARKVTY-------  115 (706)
T ss_dssp             E-EEEC-------CEEEEHHHHHTTC-----------CCCEEEEETTT-TEEEEE-ETTEEEEEETTTTEEEE-------
T ss_pred             E-EEECCCCcEeeEEeechhHhhhhccchhccccccccCceeEEECCC-CeEEEE-ECCEEEEEECCCCceEE-------
Confidence            8 9999999884 5555544                 56999999999 555554 45999999999887543       


Q ss_pred             eEEEEeCCCCCCCCCCCCccccccccccCCcceEeeCCCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCC-----CCCCC
Q psy12697        184 IFEVCWNSRGTPPNPPESMEVDASIEIPQSKATKLIGHESEVFICAWNPVKDFLASGSGDSTARIWDMTD-----STKKD  258 (602)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~~-----~~~~~  258 (602)
                                                        +..+...+..++|+|||+.|+++ .++.|.+|++.+     ++...
T Consensus       116 ----------------------------------l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~  160 (706)
T 2z3z_A          116 ----------------------------------LFDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIA  160 (706)
T ss_dssp             ----------------------------------EECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEE
T ss_pred             ----------------------------------ccCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCcEE
Confidence                                              23355667788999999999985 679999999987     54321


Q ss_pred             CccceEEEEEEecCCCcccCCCCceeEEeeCCCCCeEEEEe---------------------------------CCCeEE
Q psy12697        259 PKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFLATGS---------------------------------YDGYAR  305 (602)
Q Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~---------------------------------~dg~i~  305 (602)
                      ........  ..........+...+.+++|+|||++|++++                                 .+..|.
T Consensus       161 ~~~~~~~~--~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~  238 (706)
T 2z3z_A          161 VTIDGTET--LVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVG  238 (706)
T ss_dssp             SCSCCBTT--EEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEE
T ss_pred             eccCCCCC--eEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEE
Confidence            10000000  0000000001123368999999999999987                                 446799


Q ss_pred             EEcCCCcceeecc---cccCCeEEEEEccCCCEEEEEecCC-----cEEEEeCCCCceeEEee-ecc-C---Ceeeeecc
Q psy12697        306 IWTSDGSLKSTLG---QHKGPIFALKWNKRGNYILSAGVDK-----TTIIWDAASGQCEQQFS-FHS-A---PALDVDWQ  372 (602)
Q Consensus       306 i~~~~~~~~~~~~---~~~~~i~~~~~~~~~~~l~~~~~dg-----~i~~wd~~~~~~~~~~~-~~~-~---~~~~~~~~  372 (602)
                      +||+.+.....+.   .|...+.+++|+|||++|++++.++     .|.+||+.+++....+. ... .   .+..+.|+
T Consensus       239 ~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~s  318 (706)
T 2z3z_A          239 IYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFL  318 (706)
T ss_dssp             EEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEEC
T ss_pred             EEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceee
Confidence            9998865443332   4667799999999999999988776     89999999984433332 222 1   24678999


Q ss_pred             C--CCe-EEEeeCCCeEEEEEcC-CCceeeEeccCCCCeEE-EEECCCCCEEEEEECC-C----eEEEEeCCCCeeeEee
Q psy12697        373 S--NTS-FASCSTDQHIHVCKLH-SDKPVKSFEGHTNEVNA-IKWDPQGLLLASCSDD-M----TLKIWSLDKDNCVHDL  442 (602)
Q Consensus       373 ~--~~~-~~~~~~~~~i~i~d~~-~~~~~~~~~~~~~~i~~-~~~~~~~~~l~~~~~d-g----~i~iwd~~~~~~~~~~  442 (602)
                      |  ++. ++++..++.+.+|++. +++.+..+..+...+.. ++|+|+++.|+.++.+ +    .|..||+.+++ ...+
T Consensus       319 p~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~-~~~l  397 (706)
T 2z3z_A          319 PGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGK-TKDL  397 (706)
T ss_dssp             TTCSSEEEEEECTTSSCEEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCC-CEES
T ss_pred             cCCCCEEEEEEccCCccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCC-ceec
Confidence            8  876 4556678888888876 56777788888877877 7999999988766554 3    56677766544 2222


Q ss_pred             ccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCC----CeEEEEeCCCCceeeee
Q psy12697        443 QAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVD----KTTIIWDAASGQCEQQF  518 (602)
Q Consensus       443 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d----g~i~iwd~~~~~~~~~~  518 (602)
                      .                                   +...+.+++|||||++++....+    +.|++||+.+++ ...+
T Consensus       398 ~-----------------------------------~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~~~~-~~~~  441 (706)
T 2z3z_A          398 T-----------------------------------PESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIGKGS-HTLL  441 (706)
T ss_dssp             C-----------------------------------CSSSEEEEEECTTSSEEEEEEECSSCSCEEEEEESSSCE-EEEE
T ss_pred             c-----------------------------------CCCceEEEEECCCCCEEEEEecCCCCCcEEEEEECCCCe-Eeec
Confidence            1                                   23456678888899988876443    569999999887 3333


Q ss_pred             cccCCCeeEeeecCCceEEEeeCCC--cEEEeec
Q psy12697        519 SFHSAPALDVDWQSNTSFASCSTDQ--HIHVCKL  550 (602)
Q Consensus       519 ~~~~~~v~~~~~s~~~~l~~~~~d~--~i~iw~~  550 (602)
                       .+..++....+.+...+-.-..||  .+..|-.
T Consensus       442 -~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  474 (706)
T 2z3z_A          442 -EAKNPDTGYAMPEIRTGTIMAADGQTPLYYKLT  474 (706)
T ss_dssp             -ECC------CCCCEEEEEEECTTSSSEEEEEEE
T ss_pred             -cccchhhhcCCCCcEEEEEEcCCCCEEEEEEEE
Confidence             344455555555444333344455  5655543

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.94  E-value=6.4e-25  Score=233.06  Aligned_cols=329  Identities=9%  Similarity=0.112  Sum_probs=217.5

Q ss_pred             eEEEEECCCCCeEEEeeCCceEEEEecCCceeE-EEeeccCceEEEEeCCCCCCCCCCCCccccccccccCCcceEeeCC
Q psy12697        143 VYSVAFSPDGKFLASGSFDKCVHIWSARTGQLV-HSYKGTGGIFEVCWNSRGTPPNPPESMEVDASIEIPQSKATKLIGH  221 (602)
Q Consensus       143 V~~~~~s~d~~~l~s~~~d~~v~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h  221 (602)
                      +..+.|+  |+.+++++.|+ | +||+.+|+.+ ..+.......                      ..++... .....+
T Consensus        28 ~~~~~w~--g~~~~~~~~~~-i-~~d~~tg~~~~~~l~~~~~~~----------------------~~l~~~~-~~~~~~   80 (706)
T 2z3z_A           28 VVGLQWM--GDNYVFIEGDD-L-VFNKANGKSAQTTRFSAADLN----------------------ALMPEGC-KFQTTD   80 (706)
T ss_dssp             CTTCEEE--TTEEEEEETTE-E-EEEC-------CEEEEHHHHH----------------------TTC-----------
T ss_pred             CCCCcCc--CCeEEEEeCCc-E-EEECCCCcEeeEEeechhHhh----------------------hhccchh-cccccc
Confidence            4446777  66677777788 8 9999999873 2221110000                      0000000 001123


Q ss_pred             CcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEeeCCCCCeEEEEeCC
Q psy12697        222 ESEVFICAWNPVKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFLATGSYD  301 (602)
Q Consensus       222 ~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d  301 (602)
                      ...|.+++|+|+ ..++.+. ++.|++||+.+++..      ..           ..+...+.+++|+|||+.|+++ .+
T Consensus        81 ~~~v~~~~~spd-~~~~~~~-~~~i~~~d~~~~~~~------~l-----------~~~~~~~~~~~~SpdG~~la~~-~~  140 (706)
T 2z3z_A           81 AFPSFRTLDAGR-GLVVLFT-QGGLVGFDMLARKVT------YL-----------FDTNEETASLDFSPVGDRVAYV-RN  140 (706)
T ss_dssp             -CCCEEEEETTT-TEEEEEE-TTEEEEEETTTTEEE------EE-----------ECCTTCCTTCEECTTSSEEEEE-ET
T ss_pred             ccCceeEEECCC-CeEEEEE-CCEEEEEECCCCceE------Ec-----------cCCcccccCCcCCCCCCEEEEE-EC
Confidence            357999999999 6666654 599999999765321      11           1123568889999999999985 68


Q ss_pred             CeEEEEcCCC-----cceee-cccccCC--------------eEEEEEccCCCEEEEEe---------------------
Q psy12697        302 GYARIWTSDG-----SLKST-LGQHKGP--------------IFALKWNKRGNYILSAG---------------------  340 (602)
Q Consensus       302 g~i~i~~~~~-----~~~~~-~~~~~~~--------------i~~~~~~~~~~~l~~~~---------------------  340 (602)
                      +.|++|++.+     ..... ...+...              +.++.|+|||++|++++                     
T Consensus       141 ~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~  220 (706)
T 2z3z_A          141 HNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAES  220 (706)
T ss_dssp             TEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEE
T ss_pred             CeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCce
Confidence            9999999875     43333 3333332              48899999999999987                     


Q ss_pred             ------------cCCcEEEEeCCCCceeEEee--eccCCeeeeeccCCCe-EEEeeCCC-----eEEEEEcCCCceeeEe
Q psy12697        341 ------------VDKTTIIWDAASGQCEQQFS--FHSAPALDVDWQSNTS-FASCSTDQ-----HIHVCKLHSDKPVKSF  400 (602)
Q Consensus       341 ------------~dg~i~~wd~~~~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~-----~i~i~d~~~~~~~~~~  400 (602)
                                  .+..|.+||+.+++......  .+...+..+.|+|++. +++++.++     .|++||+.+++....+
T Consensus       221 ~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~  300 (706)
T 2z3z_A          221 KPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTL  300 (706)
T ss_dssp             EEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEE
T ss_pred             EEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEE
Confidence                        34679999999887654432  3456688999999976 66666554     8999999998433333


Q ss_pred             c-c-CCC---CeEEEEECC--CCCEEEEEECCCeEEEEeCC-CCeeeEeeccccccEEEEEECCCCCCCCCCCcceeeee
Q psy12697        401 E-G-HTN---EVNAIKWDP--QGLLLASCSDDMTLKIWSLD-KDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFIL  472 (602)
Q Consensus       401 ~-~-~~~---~i~~~~~~~--~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~  472 (602)
                      . . +..   .+..++|+|  +|+++++++.|+.++||+++ ++..+..+..                            
T Consensus       301 ~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~----------------------------  352 (706)
T 2z3z_A          301 FVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTK----------------------------  352 (706)
T ss_dssp             EEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECCC----------------------------
T ss_pred             EEccCCCeECccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEecCC----------------------------
Confidence            2 2 222   246789999  99999999999999999876 4554544433                            


Q ss_pred             eeccCCccCCeEE-EEEccCCCEEEEEeC-CC----eEEEEeCCCCceeeeecccCCCeeEeeecCCc-eEEEeeCC---
Q psy12697        473 KSTLGQHKGPIFA-LKWNKRGNYILSAGV-DK----TTIIWDAASGQCEQQFSFHSAPALDVDWQSNT-SFASCSTD---  542 (602)
Q Consensus       473 ~~~~~~~~~~v~~-i~~s~~~~~l~s~~~-dg----~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~-~l~~~~~d---  542 (602)
                            +...+.. ++|+|+|+.|+.++. ++    .|..||+.+++ ...+. |...+.+++|+||| .++....+   
T Consensus       353 ------~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~-~~~l~-~~~~~~~~~~spdg~~l~~~~~~~~~  424 (706)
T 2z3z_A          353 ------GEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGK-TKDLT-PESGMHRTQLSPDGSAIIDIFQSPTV  424 (706)
T ss_dssp             ------SSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCC-CEESC-CSSSEEEEEECTTSSEEEEEEECSSC
T ss_pred             ------CCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCC-ceecc-CCCceEEEEECCCCCEEEEEecCCCC
Confidence                  3344544 677888887766554 43    67888887776 33444 66779999999999 66665443   


Q ss_pred             -CcEEEeecCCCC
Q psy12697        543 -QHIHVCKLHSDK  554 (602)
Q Consensus       543 -~~i~iw~~~~~~  554 (602)
                       +.|++||+.+++
T Consensus       425 p~~i~l~d~~~~~  437 (706)
T 2z3z_A          425 PRKVTVTNIGKGS  437 (706)
T ss_dssp             SCEEEEEESSSCE
T ss_pred             CcEEEEEECCCCe
Confidence             569999998876

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.94  E-value=7.6e-25  Score=233.35  Aligned_cols=367  Identities=12%  Similarity=0.081  Sum_probs=239.7

Q ss_pred             CCCcccCCcceeccceeeeecccceeeeeeeccCC---ceEEEEECCCCCeEEEeeCC---------ceEEEEecCCcee
Q psy12697        107 TGPAITNGEEVHRLTLPLWDVERGECLNTLTRHTE---PVYSVAFSPDGKFLASGSFD---------KCVHIWSARTGQL  174 (602)
Q Consensus       107 ~~~~~~~~~~~~~~~i~vwd~~~~~~~~~l~~h~~---~V~~~~~s~d~~~l~s~~~d---------~~v~iwd~~~~~~  174 (602)
                      ++.++..+   .+++|++||+.+++....+.+|..   .|.+++|||||++|++++.+         +.|.+||+.+++.
T Consensus        27 dg~~~~~~---~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~  103 (723)
T 1xfd_A           27 DTEFIYRE---QKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDP  103 (723)
T ss_dssp             SSCBCCCC---SSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCC
T ss_pred             CCcEEEEe---CCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCce
Confidence            34455442   356999999999999888888876   49999999999999999764         7888999998875


Q ss_pred             EEEeeccCceEEEEeCCCCCCCCCCCCccccccccccCCcceEeeCCCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCC
Q psy12697        175 VHSYKGTGGIFEVCWNSRGTPPNPPESMEVDASIEIPQSKATKLIGHESEVFICAWNPVKDFLASGSGDSTARIWDMTDS  254 (602)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~~~  254 (602)
                      . .+.                                     ...+|...+..++|+|||+.|++++. +.|++|++.++
T Consensus       104 ~-~l~-------------------------------------~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g  144 (723)
T 1xfd_A          104 Q-SLD-------------------------------------PPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGK  144 (723)
T ss_dssp             E-ECC-------------------------------------CTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSS
T ss_pred             E-ecc-------------------------------------CCccccccccccEECCCCCEEEEEEC-CeEEEEECCCC
Confidence            2 111                                     11235556888999999999999886 78999999876


Q ss_pred             CCCCCccceE----EEEEEecCCCcccCCCCceeEEeeCCCCCeEEEEeCC-CeEEEEcCCCcceeecccccCCeEEEEE
Q psy12697        255 TKKDPKELQI----VLRHCISKGGTEVPSNKDVTSLDWNNNGSFLATGSYD-GYARIWTSDGSLKSTLGQHKGPIFALKW  329 (602)
Q Consensus       255 ~~~~~~~~~~----~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-g~i~i~~~~~~~~~~~~~~~~~i~~~~~  329 (602)
                      ..........    ....  ..-.........+.+++|+|||+.|++++.+ +.+.+|++....    ..+...+..+.|
T Consensus       145 ~~~~~~~~~~~~~~~~g~--~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~  218 (723)
T 1xfd_A          145 QAIRVVSTGKEGVIYNGL--SDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYT----GSIYPTVKPYHY  218 (723)
T ss_dssp             CCEEEECCCBTTTEEEEE--CCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCS----SSSSCCCEEEEC
T ss_pred             ceEEEecCCCCCceECcc--cceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccC----CcCCCcceeccC
Confidence            5421000000    0000  0000000001234789999999999988765 466777654211    113345788999


Q ss_pred             ccCCCEEEEEecCCcEEEEeCCCCceeEEeeec------cCCeeeeeccCCCeEEE-ee----CCCeEEEEEcCCCceee
Q psy12697        330 NKRGNYILSAGVDKTTIIWDAASGQCEQQFSFH------SAPALDVDWQSNTSFAS-CS----TDQHIHVCKLHSDKPVK  398 (602)
Q Consensus       330 ~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~-~~----~~~~i~i~d~~~~~~~~  398 (602)
                      .++|..    ..+..|.+||+.+++....+..+      ...+..+.|+|++.+++ ..    .+..|++||+.+++...
T Consensus       219 ~~~G~~----~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~  294 (723)
T 1xfd_A          219 PKAGSE----NPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTK  294 (723)
T ss_dssp             CBTTSC----CCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEE
T ss_pred             CCCCCC----CCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceE
Confidence            888763    33458999999998865555543      45678899999987653 32    23579999999988766


Q ss_pred             EeccC-CCCe----EEEEECCCCCEEEE--EECCC------eEEEEeC-CCCee--eEeeccccccEEEEEECCCCCCCC
Q psy12697        399 SFEGH-TNEV----NAIKWDPQGLLLAS--CSDDM------TLKIWSL-DKDNC--VHDLQAHNKEIYTIKWSPTGPETS  462 (602)
Q Consensus       399 ~~~~~-~~~i----~~~~~~~~~~~l~~--~~~dg------~i~iwd~-~~~~~--~~~~~~~~~~i~~~~~~~~~~~~~  462 (602)
                      .+..+ ...+    ..++|+|||+.|+.  +..++      .|.+||+ ..+..  ...+..                  
T Consensus       295 ~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~------------------  356 (723)
T 1xfd_A          295 KHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITS------------------  356 (723)
T ss_dssp             EEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCC------------------
T ss_pred             EEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeec------------------
Confidence            65443 3333    37899999997775  45667      5666773 33320  222221                  


Q ss_pred             CCCcceeeeeeeccCCccCCeEE-EEEccCCCEEEEEeCC---CeEEEEeCCCCc--eeeeecc---cCCCeeEeeecCC
Q psy12697        463 NPNMSLIFILKSTLGQHKGPIFA-LKWNKRGNYILSAGVD---KTTIIWDAASGQ--CEQQFSF---HSAPALDVDWQSN  533 (602)
Q Consensus       463 ~~~~~~~~~~~~~~~~~~~~v~~-i~~s~~~~~l~s~~~d---g~i~iwd~~~~~--~~~~~~~---~~~~v~~~~~s~~  533 (602)
                                      +...+.. ++|+|||++|+..+.+   +.+++|++....  ....+..   |...+..++|+||
T Consensus       357 ----------------~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~spd  420 (723)
T 1xfd_A          357 ----------------GDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSASFSHS  420 (723)
T ss_dssp             ----------------SSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTT
T ss_pred             ----------------CCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCCCCCCcceecccccCCCCeEEEEECCC
Confidence                            1222333 6889999999876655   789999986432  3344443   5677899999999


Q ss_pred             c-eEEEe-eCCC--cEEEeecCCCCceeee
Q psy12697        534 T-SFASC-STDQ--HIHVCKLHSDKPVKSF  559 (602)
Q Consensus       534 ~-~l~~~-~~d~--~i~iw~~~~~~~~~~~  559 (602)
                      | .++.. +..+  ...+++..++..+..+
T Consensus       421 g~~l~~~~~~~~~p~~~~~~~~~~~~~~~~  450 (723)
T 1xfd_A          421 MDFFLLKCEGPGVPMVTVHNTTDKKKMFDL  450 (723)
T ss_dssp             SSEEEEECCSSSSCCEEEEETTTCCEEEEE
T ss_pred             CCEEEEEccCCCCCeEEEEECCCCCEEEEe
Confidence            9 55543 3333  3445565555544443

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.94  E-value=1.3e-23  Score=203.19  Aligned_cols=270  Identities=11%  Similarity=0.105  Sum_probs=210.3

Q ss_pred             CceeEEeeCCCCCeEEEEeC-------CCeEEEEcCCC-cceeecccccCCeEEEEEccCCCEEEEE-ecCCcEEEEeCC
Q psy12697        281 KDVTSLDWNNNGSFLATGSY-------DGYARIWTSDG-SLKSTLGQHKGPIFALKWNKRGNYILSA-GVDKTTIIWDAA  351 (602)
Q Consensus       281 ~~i~~~~~~~~~~~l~~~~~-------dg~i~i~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~~wd~~  351 (602)
                      ..+..++|+|+++.+++++.       ++.|.+||... +....+. ....+..++|+|++++++++ ..++.|.+||..
T Consensus        41 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~  119 (353)
T 3vgz_A           41 KGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIH-NDLKPFGATINNTTQTLWFGNTVNSAVTAIDAK  119 (353)
T ss_dssp             SSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEE-ESSCCCSEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             cCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEe-cCCCcceEEECCCCCEEEEEecCCCEEEEEeCC
Confidence            56789999999998888774       56899999874 4444443 34557889999999966554 557999999999


Q ss_pred             CCceeEEeeeccCC---------eeeeeccCCCe-EEEee--CCCeEEEEEcCCCceeeEeccCCCCeEEEEECCCCCEE
Q psy12697        352 SGQCEQQFSFHSAP---------ALDVDWQSNTS-FASCS--TDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLL  419 (602)
Q Consensus       352 ~~~~~~~~~~~~~~---------~~~~~~~~~~~-~~~~~--~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l  419 (602)
                      +++....+..+...         +..+.|++++. ++++.  .++.|.+||..+++.+..+..+...+..++|+|++++|
T Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~l  199 (353)
T 3vgz_A          120 TGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGKRL  199 (353)
T ss_dssp             TCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTTTEE
T ss_pred             CCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECCCCCEE
Confidence            99988877764422         67789998854 44444  47899999999999888887666678899999999999


Q ss_pred             EEEECCCeEEEEeCCCCeeeEeeccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEe
Q psy12697        420 ASCSDDMTLKIWSLDKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAG  499 (602)
Q Consensus       420 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~  499 (602)
                      ++++.++.|.+||+.+++....+....                              .++...+..++|+|+|+++++++
T Consensus       200 ~~~~~~~~i~~~d~~~~~~~~~~~~~~------------------------------~~~~~~~~~~~~s~dg~~l~~~~  249 (353)
T 3vgz_A          200 YTTNADGELITIDTADNKILSRKKLLD------------------------------DGKEHFFINISLDTARQRAFITD  249 (353)
T ss_dssp             EEECTTSEEEEEETTTTEEEEEEECCC------------------------------SSSCCCEEEEEEETTTTEEEEEE
T ss_pred             EEEcCCCeEEEEECCCCeEEEEEEcCC------------------------------CCCCcccceEEECCCCCEEEEEe
Confidence            999999999999999988776654311                              11345577889999999777666


Q ss_pred             C-CCeEEEEeCCCCceeeeecccCCCeeEeeecCCc-eEEEee-CCCcEEEeecCCCCceeeeecccccceEEEEecCCc
Q psy12697        500 V-DKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNT-SFASCS-TDQHIHVCKLHSDKPVKSFEGHTTGQLVHSYKGTGG  576 (602)
Q Consensus       500 ~-dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~-~l~~~~-~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~  576 (602)
                      . ++.|.+||+.+++.+..+....  ...++|+|++ .+++++ .++.|.+||+.+++.+..+.            ....
T Consensus       250 ~~~~~v~~~d~~~~~~~~~~~~~~--~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~------------~~~~  315 (353)
T 3vgz_A          250 SKAAEVLVVDTRNGNILAKVAAPE--SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFD------------TPTH  315 (353)
T ss_dssp             SSSSEEEEEETTTCCEEEEEECSS--CCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEE------------CCSE
T ss_pred             CCCCEEEEEECCCCcEEEEEEcCC--CceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEe------------cCCC
Confidence            5 4999999999999888777543  3679999999 555554 78999999987776555543            2346


Q ss_pred             EEEEEECCCCCeEEEeccC
Q psy12697        577 IFEVCWNSRGDKVGASASD  595 (602)
Q Consensus       577 i~~l~~spdg~~l~~~~~d  595 (602)
                      +.+++|+|||++|+++..+
T Consensus       316 ~~~~~~s~dg~~l~v~~~~  334 (353)
T 3vgz_A          316 PNSLALSADGKTLYVSVKQ  334 (353)
T ss_dssp             EEEEEECTTSCEEEEEEEC
T ss_pred             CCeEEEcCCCCEEEEEEcc
Confidence            7899999999988887766

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.93  E-value=1.4e-23  Score=202.19  Aligned_cols=278  Identities=11%  Similarity=0.117  Sum_probs=181.1

Q ss_pred             CCCcceEEEEEcCCCCEEEEeeCC-CcEEEEeCC--CCCCCCCccceEEEEEEecCCCcccCCCCceeEEeeCCCCCeEE
Q psy12697        220 GHESEVFICAWNPVKDFLASGSGD-STARIWDMT--DSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFLA  296 (602)
Q Consensus       220 ~h~~~v~~~~~~~~~~~l~s~~~d-g~i~iw~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~  296 (602)
                      .|...+.+++|+|++++|++++.+ +.|.+|++.  ++..      ......         .....+..++|+|++++++
T Consensus        35 ~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~------~~~~~~---------~~~~~~~~~~~s~dg~~l~   99 (343)
T 1ri6_A           35 DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGAL------TFAAES---------ALPGSLTHISTDHQGQFVF   99 (343)
T ss_dssp             ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCE------EEEEEE---------ECSSCCSEEEECTTSSEEE
T ss_pred             ecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCce------eecccc---------ccCCCCcEEEEcCCCCEEE
Confidence            366678889999999999888886 999999997  3321      111110         1123688999999999887


Q ss_pred             EEeC-CCeEEEEcCC----CcceeecccccCCeEEEEEccCCCEEEEEe-cCCcEEEEeCCC-CceeEEeeeccCCeeee
Q psy12697        297 TGSY-DGYARIWTSD----GSLKSTLGQHKGPIFALKWNKRGNYILSAG-VDKTTIIWDAAS-GQCEQQFSFHSAPALDV  369 (602)
Q Consensus       297 ~~~~-dg~i~i~~~~----~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~~wd~~~-~~~~~~~~~~~~~~~~~  369 (602)
                      +++. ++.|.+|++.    ......+. ....+.+++|+|+++++++++ .++.|.+||+.+ ++......         
T Consensus       100 ~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~---------  169 (343)
T 1ri6_A          100 VGSYNAGNVSVTRLEDGLPVGVVDVVE-GLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDP---------  169 (343)
T ss_dssp             EEETTTTEEEEEEEETTEEEEEEEEEC-CCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEE---------
T ss_pred             EEecCCCeEEEEECCCCcccccccccc-CCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecc---------
Confidence            7665 7899999983    12223333 334588999999999888877 789999999876 43221110         


Q ss_pred             eccCCCeEEEeeCCCeEEEEEcCCCceeeEec-cCCCCeEEEEECCCCCEEEEEE-CCCeEEEEeCCC--CeeeEeeccc
Q psy12697        370 DWQSNTSFASCSTDQHIHVCKLHSDKPVKSFE-GHTNEVNAIKWDPQGLLLASCS-DDMTLKIWSLDK--DNCVHDLQAH  445 (602)
Q Consensus       370 ~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~-~dg~i~iwd~~~--~~~~~~~~~~  445 (602)
                                                  ..+. .....+..++|+|++++|++++ .++.|.+|++..  ++....    
T Consensus       170 ----------------------------~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~----  217 (343)
T 1ri6_A          170 ----------------------------AEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECV----  217 (343)
T ss_dssp             ----------------------------EEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEE----
T ss_pred             ----------------------------cccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEE----
Confidence                                        0001 1223577899999999776655 789999999953  322100    


Q ss_pred             cccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEE-eCCCeEEEEeCC--C--Cceeeeecc
Q psy12697        446 NKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSA-GVDKTTIIWDAA--S--GQCEQQFSF  520 (602)
Q Consensus       446 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~~dg~i~iwd~~--~--~~~~~~~~~  520 (602)
                          ..+...+.+                  ......+..++|+|+|++|+++ ..++.|.+||+.  +  .+.+..+..
T Consensus       218 ----~~~~~~~~~------------------~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~  275 (343)
T 1ri6_A          218 ----QTLDMMPEN------------------FSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPT  275 (343)
T ss_dssp             ----EEEECSCTT------------------CCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEEC
T ss_pred             ----eeccccCcc------------------ccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecC
Confidence                000000100                  0123456789999999888754 478999999998  3  344455554


Q ss_pred             cCCCeeEeeecCCc-eEEEee-CCCcEEEeecC--CCCceeeeecccccceEEEEecCCcEEEEEECCCCC
Q psy12697        521 HSAPALDVDWQSNT-SFASCS-TDQHIHVCKLH--SDKPVKSFEGHTTGQLVHSYKGTGGIFEVCWNSRGD  587 (602)
Q Consensus       521 ~~~~v~~~~~s~~~-~l~~~~-~d~~i~iw~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~  587 (602)
                      +.. +..++|+|++ .|++++ .++.|.+|+++  +++.          ..+..+.......+++|.|+.+
T Consensus       276 ~~~-~~~~~~s~dg~~l~~~~~~~~~v~v~~~d~~~g~~----------~~~~~~~~g~~p~~i~~~~~~~  335 (343)
T 1ri6_A          276 ETQ-PRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLL----------HEKGRYAVGQGPMWVVVNAHEG  335 (343)
T ss_dssp             SSS-CCCEEECTTSSEEEEECTTTCEEEEEEEETTTTEE----------EEEEEEECSSSCCEEEEEEEC-
T ss_pred             CCc-cceEEECCCCCEEEEecCCCCeEEEEEEcCCCcee----------eEccccccCCCCeeEEEEcccC
Confidence            444 8899999999 677766 68999999654  3321          1122222234466777777654

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.93  E-value=1.2e-23  Score=202.01  Aligned_cols=280  Identities=9%  Similarity=0.079  Sum_probs=203.0

Q ss_pred             CeEEEeeCCceEEEEecCCceeEEEeeccCceEEEEeCCCCCCCCCCCCccccccccccCCcceEeeCCCc-ceEEEEEc
Q psy12697        153 KFLASGSFDKCVHIWSARTGQLVHSYKGTGGIFEVCWNSRGTPPNPPESMEVDASIEIPQSKATKLIGHES-EVFICAWN  231 (602)
Q Consensus       153 ~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~-~v~~~~~~  231 (602)
                      ++|++++.++.|.+||+.+++.+..+..                                       ++.. .+..++|+
T Consensus         2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~---------------------------------------~~~~~~~~~~~~s   42 (337)
T 1pby_B            2 DYILAPARPDKLVVIDTEKMAVDKVITI---------------------------------------ADAGPTPMVPMVA   42 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEEC---------------------------------------TTCTTCCCCEEEC
T ss_pred             cEEEEcCCCCeEEEEECCCCcEEEEEEc---------------------------------------CCCCCCccceEEc
Confidence            5789999999999999999988765431                                       1211 36778999


Q ss_pred             CCCCEEE-EeeCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEeeCCCCCeEEEEe-----------
Q psy12697        232 PVKDFLA-SGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFLATGS-----------  299 (602)
Q Consensus       232 ~~~~~l~-s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-----------  299 (602)
                      |+++.++ ++..++.|.+||+.+++.......          .. ...+...+.+++|+|+|++++++.           
T Consensus        43 ~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~----------~~-~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~  111 (337)
T 1pby_B           43 PGGRIAYATVNKSESLVKIDLVTGETLGRIDL----------ST-PEERVKSLFGAALSPDGKTLAIYESPVRLELTHFE  111 (337)
T ss_dssp             TTSSEEEEEETTTTEEEEEETTTCCEEEEEEC----------CB-TTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEE
T ss_pred             CCCCEEEEEeCCCCeEEEEECCCCCeEeeEEc----------CC-cccccccccceEECCCCCEEEEEeccccccccccc
Confidence            9997664 555678999999987653211100          00 000112567899999999998886           


Q ss_pred             -CCCeEEEEcCCCc-ceeecccccCCeEEEEEccCCCEEEEEecCCcEEEEeCCCCceeEEeeeccCCeeeeeccCCCe-
Q psy12697        300 -YDGYARIWTSDGS-LKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTS-  376 (602)
Q Consensus       300 -~dg~i~i~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-  376 (602)
                       .++.|.+||.... ....+. ....+.+++|+|++++|+++  ++.|.+||+.+++....+..... ...+.|+|++. 
T Consensus       112 ~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~s~dg~~  187 (337)
T 1pby_B          112 VQPTRVALYDAETLSRRKAFE-APRQITMLAWARDGSKLYGL--GRDLHVMDPEAGTLVEDKPIQSW-EAETYAQPDVLA  187 (337)
T ss_dssp             ECCCEEEEEETTTTEEEEEEE-CCSSCCCEEECTTSSCEEEE--SSSEEEEETTTTEEEEEECSTTT-TTTTBCCCBCCC
T ss_pred             ccCceEEEEECCCCcEEEEEe-CCCCcceeEECCCCCEEEEe--CCeEEEEECCCCcEeeeeecccc-CCCceeCCCccE
Confidence             5799999998754 333333 34567889999999988887  68899999999988776654431 11336677654 


Q ss_pred             EEEee-CCC-----------------------eEEEEEcCCCcee-eEeccCCCCeEEEEECCCCCEEEEEECCCeEEEE
Q psy12697        377 FASCS-TDQ-----------------------HIHVCKLHSDKPV-KSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIW  431 (602)
Q Consensus       377 ~~~~~-~~~-----------------------~i~i~d~~~~~~~-~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw  431 (602)
                      +++.. .++                       .|.+||+.+++.. ..+..+...+.+++|+|++++++++  ++.|.+|
T Consensus       188 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~  265 (337)
T 1pby_B          188 VWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESF  265 (337)
T ss_dssp             CCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEE
T ss_pred             EeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCCCCCceeeEEECCCCCEEEEe--CCeEEEE
Confidence            22222 222                       4789999988764 3344566678899999999999988  6899999


Q ss_pred             eCCCCeeeEeeccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCCCeEEEEeCCC
Q psy12697        432 SLDKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAAS  511 (602)
Q Consensus       432 d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~~~  511 (602)
                      |+.+++.+..+...                                   ..+.+++|+|+|++|++++.++.|.+||+.+
T Consensus       266 d~~~~~~~~~~~~~-----------------------------------~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~  310 (337)
T 1pby_B          266 DLEKNASIKRVPLP-----------------------------------HSYYSVNVSTDGSTVWLGGALGDLAAYDAET  310 (337)
T ss_dssp             ETTTTEEEEEEECS-----------------------------------SCCCEEEECTTSCEEEEESBSSEEEEEETTT
T ss_pred             ECCCCcCcceecCC-----------------------------------CceeeEEECCCCCEEEEEcCCCcEEEEECcC
Confidence            99988776555321                                   2356788888999999999999999999999


Q ss_pred             CceeeeecccCC
Q psy12697        512 GQCEQQFSFHSA  523 (602)
Q Consensus       512 ~~~~~~~~~~~~  523 (602)
                      ++.+..+..+..
T Consensus       311 ~~~~~~~~~~~~  322 (337)
T 1pby_B          311 LEKKGQVDLPGN  322 (337)
T ss_dssp             CCEEEEEECGGG
T ss_pred             CcEEEEEEcCCC
Confidence            998888775543

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.93  E-value=7.1e-23  Score=196.14  Aligned_cols=283  Identities=8%  Similarity=0.030  Sum_probs=194.0

Q ss_pred             EEECCCCC-eEEEeeCCceEEEEecCCceeEEEeeccCceEEEEeCCCCCCCCCCCCccccccccccCCcceEeeCCCcc
Q psy12697        146 VAFSPDGK-FLASGSFDKCVHIWSARTGQLVHSYKGTGGIFEVCWNSRGTPPNPPESMEVDASIEIPQSKATKLIGHESE  224 (602)
Q Consensus       146 ~~~s~d~~-~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~  224 (602)
                      ..|.++++ .+++++.++.|.+||..+++.+..+.                                        .+...
T Consensus         3 ~~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~----------------------------------------~~~~~   42 (331)
T 3u4y_A            3 AMFQTTSNFGIVVEQHLRRISFFSTDTLEILNQIT----------------------------------------LGYDF   42 (331)
T ss_dssp             ----CCCCEEEEEEGGGTEEEEEETTTCCEEEEEE----------------------------------------CCCCE
T ss_pred             eeEcCCCCEEEEEecCCCeEEEEeCcccceeeeEE----------------------------------------ccCCc
Confidence            34666555 46778889999999999998875432                                        23445


Q ss_pred             eEEEEEcCCCCEEEEeeC-CCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEeeCCCCCeEEEEeCCC-
Q psy12697        225 VFICAWNPVKDFLASGSG-DSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFLATGSYDG-  302 (602)
Q Consensus       225 v~~~~~~~~~~~l~s~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg-  302 (602)
                      + .++|+|+++++++++. ++.|.+||+.+++..     .....          .+..+..+++|+|+|++++++..++ 
T Consensus        43 ~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~-----~~~~~----------~~~~~~~~~~~s~dg~~l~~~~~~~~  106 (331)
T 3u4y_A           43 V-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPK-----VVAIQ----------EGQSSMADVDITPDDQFAVTVTGLNH  106 (331)
T ss_dssp             E-EEEECSSSCEEEEEESTTCEEEEEECSSSSCE-----EEEEE----------ECSSCCCCEEECTTSSEEEECCCSSS
T ss_pred             c-eEEEcCCCCEEEEEeCCCCeEEEEECCCCcee-----EEecc----------cCCCCccceEECCCCCEEEEecCCCC
Confidence            5 8999999997776665 899999999876531     11111          1123344499999999999665553 


Q ss_pred             --eEEEEcCCCc-ceeecccccCCeEEEEEccCCCEEEEE-ecCCc-EEEEeCCCCceeE----EeeeccCCeeeeeccC
Q psy12697        303 --YARIWTSDGS-LKSTLGQHKGPIFALKWNKRGNYILSA-GVDKT-TIIWDAASGQCEQ----QFSFHSAPALDVDWQS  373 (602)
Q Consensus       303 --~i~i~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~-i~~wd~~~~~~~~----~~~~~~~~~~~~~~~~  373 (602)
                        .|.+||.... ....+. ......+++|+|+|++++++ ..++. +.+|++.....+.    ...........+.|+|
T Consensus       107 ~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~sp  185 (331)
T 3u4y_A          107 PFNMQSYSFLKNKFISTIP-IPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTP  185 (331)
T ss_dssp             SCEEEEEETTTTEEEEEEE-CCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECT
T ss_pred             cccEEEEECCCCCeEEEEE-CCCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECC
Confidence              8999998744 444433 44567899999999866655 44578 9999987644332    1122344578899999


Q ss_pred             CCe-E-EEeeCCCeEEEEEcCCCce---eeEeccCCCCeEEEEECCCCCEEEEEE-CCCeEEEEeCCCCee--eEeeccc
Q psy12697        374 NTS-F-ASCSTDQHIHVCKLHSDKP---VKSFEGHTNEVNAIKWDPQGLLLASCS-DDMTLKIWSLDKDNC--VHDLQAH  445 (602)
Q Consensus       374 ~~~-~-~~~~~~~~i~i~d~~~~~~---~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~--~~~~~~~  445 (602)
                      ++. + +++..++.|.+||+.+++.   +..+..+ ..+..++|+|+|++|++++ .++.|.+||+.+++.  +..+...
T Consensus       186 dg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~~-~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~  264 (331)
T 3u4y_A          186 DGNFAFVANLIGNSIGILETQNPENITLLNAVGTN-NLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHG  264 (331)
T ss_dssp             TSSEEEEEETTTTEEEEEECSSTTSCEEEEEEECS-SCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECC
T ss_pred             CCCEEEEEeCCCCeEEEEECCCCcccceeeeccCC-CCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeecccccc
Confidence            975 4 4445689999999999887   7777643 5678999999999776665 478899999998765  2222110


Q ss_pred             cccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeC-CCeEEEEeCCCCc
Q psy12697        446 NKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGV-DKTTIIWDAASGQ  513 (602)
Q Consensus       446 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~-dg~i~iwd~~~~~  513 (602)
                            +...                     .........++|+|||++|++++. ++.|.+||+....
T Consensus       265 ------~~~~---------------------~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~  306 (331)
T 3u4y_A          265 ------LLID---------------------PRPLFGANQMALNKTETKLFISANISRELKVFTISGKV  306 (331)
T ss_dssp             ------CCCC---------------------CGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSCE
T ss_pred             ------cccC---------------------CCCcccccceEECCCCCEEEEecCCCCcEEEEEecCCc
Confidence                  0000                     001122256899999998876554 6799999998654

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.93  E-value=2.9e-24  Score=202.31  Aligned_cols=254  Identities=14%  Similarity=0.163  Sum_probs=194.7

Q ss_pred             cceeccceeeeecccceeeeeeeccCCceEEEEECCCCCeEEEeeCCceEEEEecCC-ceeEEEeeccCceEEEEeCCCC
Q psy12697        115 EEVHRLTLPLWDVERGECLNTLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSART-GQLVHSYKGTGGIFEVCWNSRG  193 (602)
Q Consensus       115 ~~~~~~~i~vwd~~~~~~~~~l~~h~~~V~~~~~s~d~~~l~s~~~d~~v~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~  193 (602)
                      ....+++|++||+.+++.. .+..|...|.+++|+|||++|++++ ++.|.+||+.+ ++.....               
T Consensus        17 ~~~~~~~i~~~d~~~~~~~-~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~---------------   79 (297)
T 2ojh_A           17 GGSMRSSIEIFNIRTRKMR-VVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVD---------------   79 (297)
T ss_dssp             -CCCCEEEEEEETTTTEEE-EEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECC---------------
T ss_pred             CCCcceeEEEEeCCCCcee-eeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEec---------------
Confidence            3456789999999998866 5666899999999999999999986 88999999998 7654322               


Q ss_pred             CCCCCCCCccccccccccCCcceEeeCC-CcceEEEEEcCCCCEEEEee--CCCcEEEEeCCCCCCCCCccceEEEEEEe
Q psy12697        194 TPPNPPESMEVDASIEIPQSKATKLIGH-ESEVFICAWNPVKDFLASGS--GDSTARIWDMTDSTKKDPKELQIVLRHCI  270 (602)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~l~~h-~~~v~~~~~~~~~~~l~s~~--~dg~i~iw~~~~~~~~~~~~~~~~~~~~~  270 (602)
                                               .+| ...+.+++|+|++++|++++  .++...+|.++......    .       
T Consensus        80 -------------------------~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~----~-------  123 (297)
T 2ojh_A           80 -------------------------TGFATICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGTP----R-------  123 (297)
T ss_dssp             -------------------------CTTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCCC----E-------
T ss_pred             -------------------------cccccccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCce----E-------
Confidence                                     123 46688899999999999998  44566776664322110    0       


Q ss_pred             cCCCcccCCCCceeEEeeCCCCCeEE-EEeCCCeEEEEcC--CCcceeecccccCCeEEEEEccCCCEEEEEe-cCCcEE
Q psy12697        271 SKGGTEVPSNKDVTSLDWNNNGSFLA-TGSYDGYARIWTS--DGSLKSTLGQHKGPIFALKWNKRGNYILSAG-VDKTTI  346 (602)
Q Consensus       271 ~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~dg~i~i~~~--~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~  346 (602)
                           .......+.+++|+|+++.|+ ++..++.+.+|++  .+.....+..+...+.+++|+|++++|+.++ .++.+.
T Consensus       124 -----~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~  198 (297)
T 2ojh_A          124 -----LMTKNLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQ  198 (297)
T ss_dssp             -----ECCSSSSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEECCCSSSCEEEEEECTTSSEEEEEECTTSSCE
T ss_pred             -----EeecCCCccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEcccCCCccccceECCCCCEEEEEecCCCCcc
Confidence                 011123488899999999887 6778898999884  4556667777888999999999999888766 588999


Q ss_pred             EEeCC-CCceeEEeeeccCCeeeeeccCCCe-EEEeeCC-----------CeEEEEEcCCCce--eeEeccCCCCeEEEE
Q psy12697        347 IWDAA-SGQCEQQFSFHSAPALDVDWQSNTS-FASCSTD-----------QHIHVCKLHSDKP--VKSFEGHTNEVNAIK  411 (602)
Q Consensus       347 ~wd~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-----------~~i~i~d~~~~~~--~~~~~~~~~~i~~~~  411 (602)
                      +|++. .+.....+..+...+..+.|+|++. +++++.+           +.|++||+.+++.  +..+.+|...+.+++
T Consensus       199 i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~  278 (297)
T 2ojh_A          199 IWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPN  278 (297)
T ss_dssp             EEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCC
T ss_pred             EEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccCCCCcccccce
Confidence            99876 4556666766777888899999865 5555544           5699999998865  444557888899999


Q ss_pred             ECCCCCEEEEEECCC
Q psy12697        412 WDPQGLLLASCSDDM  426 (602)
Q Consensus       412 ~~~~~~~l~~~~~dg  426 (602)
                      |+|++++|++++.+.
T Consensus       279 ~spdg~~l~~~~~~~  293 (297)
T 2ojh_A          279 WSPDGDEFAYVRYFP  293 (297)
T ss_dssp             BCTTSSEEEEEEECC
T ss_pred             ECCCCCEEEEEEecc
Confidence            999999998887654

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.93  E-value=2.9e-24  Score=228.42  Aligned_cols=321  Identities=13%  Similarity=0.158  Sum_probs=221.1

Q ss_pred             EEEECCCCCeEEEeeCCceEEEEecCCceeEEEeeccCceEEEEeCCCCCCCCCCCCccccccccccCCcceEeeCCCc-
Q psy12697        145 SVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKGTGGIFEVCWNSRGTPPNPPESMEVDASIEIPQSKATKLIGHES-  223 (602)
Q Consensus       145 ~~~~s~d~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~-  223 (602)
                      .++|+|||++++++ .|++|++||+.+++....+.                                        +|.. 
T Consensus        20 ~~~~s~dg~~~~~~-~d~~i~~~~~~~g~~~~~~~----------------------------------------~~~~~   58 (719)
T 1z68_A           20 FPNWISGQEYLHQS-ADNNIVLYNIETGQSYTILS----------------------------------------NRTMK   58 (719)
T ss_dssp             CCEESSSSEEEEEC-TTSCEEEEESSSCCEEEEEC----------------------------------------HHHHH
T ss_pred             ccEECCCCeEEEEc-CCCCEEEEEcCCCcEEEEEc----------------------------------------ccccc
Confidence            57899999766665 69999999999988754332                                        2222 


Q ss_pred             --ceEEEEEcCCCCEEEEeeC---------CCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEeeCCCC
Q psy12697        224 --EVFICAWNPVKDFLASGSG---------DSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNG  292 (602)
Q Consensus       224 --~v~~~~~~~~~~~l~s~~~---------dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  292 (602)
                        .+.+++|+|||++|++++.         ++.|++||+.+++......+                 ...+..++|+|||
T Consensus        59 ~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~l-----------------~~~~~~~~~SPDG  121 (719)
T 1z68_A           59 SVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNEL-----------------PRPIQYLCWSPVG  121 (719)
T ss_dssp             TTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCC-----------------CSSBCCEEECSST
T ss_pred             ccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCccccceec-----------------CcccccceECCCC
Confidence              3889999999999998876         78999999988754111111                 1458889999999


Q ss_pred             CeEEEEeCCCeEEEEcCCCcceeec--ccccCCe-----------------EEEEEccCCCEEEEEecCC----------
Q psy12697        293 SFLATGSYDGYARIWTSDGSLKSTL--GQHKGPI-----------------FALKWNKRGNYILSAGVDK----------  343 (602)
Q Consensus       293 ~~l~~~~~dg~i~i~~~~~~~~~~~--~~~~~~i-----------------~~~~~~~~~~~l~~~~~dg----------  343 (602)
                      +.|+.+. ++.|++|+..+.....+  .++...|                 .+++|+|||++|++++.|.          
T Consensus       122 ~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~  200 (719)
T 1z68_A          122 SKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSY  200 (719)
T ss_dssp             TCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEE
T ss_pred             CEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeec
Confidence            9999885 78999999875433333  2232222                 4899999999999887652          


Q ss_pred             ------------------------cEEEEeCCCCcee--EE------eeeccCCeeeeeccCCCeEEEeeC-C----CeE
Q psy12697        344 ------------------------TTIIWDAASGQCE--QQ------FSFHSAPALDVDWQSNTSFASCST-D----QHI  386 (602)
Q Consensus       344 ------------------------~i~~wd~~~~~~~--~~------~~~~~~~~~~~~~~~~~~~~~~~~-~----~~i  386 (602)
                                              .|.+||+.+++..  ..      +..+...+..+.|+|++.++.... .    ..|
T Consensus       201 ~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l  280 (719)
T 1z68_A          201 YGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVL  280 (719)
T ss_dssp             CCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEE
T ss_pred             cCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEE
Confidence                                    7889999987753  11      223556788999999987665422 1    248


Q ss_pred             EEEE----cCCCceeeEe----ccCCCCeE-----EEEECCCCCEEEE--EECCC--eEEEEeCCCCeeeEeeccccccE
Q psy12697        387 HVCK----LHSDKPVKSF----EGHTNEVN-----AIKWDPQGLLLAS--CSDDM--TLKIWSLDKDNCVHDLQAHNKEI  449 (602)
Q Consensus       387 ~i~d----~~~~~~~~~~----~~~~~~i~-----~~~~~~~~~~l~~--~~~dg--~i~iwd~~~~~~~~~~~~~~~~i  449 (602)
                      .+||    ..+++....+    .+|...+.     .+.|+|||+.|+.  ...+|  .|.+||+.+++ ...+..     
T Consensus       281 ~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~-~~~lt~-----  354 (719)
T 1z68_A          281 SICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVEN-AIQITS-----  354 (719)
T ss_dssp             EEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTT-CEECSC-----
T ss_pred             EEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCc-eEeccc-----
Confidence            8899    7777665555    46666666     8899999996654  44555  57777776554 222222     


Q ss_pred             EEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCC-----CeEEEEeCCC--Cce-eeeec--
Q psy12697        450 YTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVD-----KTTIIWDAAS--GQC-EQQFS--  519 (602)
Q Consensus       450 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d-----g~i~iwd~~~--~~~-~~~~~--  519 (602)
                                                   +...+..+.++ +++.|+..+.+     +..++|.+..  +.. ...+.  
T Consensus       355 -----------------------------~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~l~~~  404 (719)
T 1z68_A          355 -----------------------------GKWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRISIGSYPPSKKCVTCH  404 (719)
T ss_dssp             -----------------------------SSSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEECSSSSCCEEESSTT
T ss_pred             -----------------------------CceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEeCCCCCCCceeccCc
Confidence                                         23345555666 77777766654     7788887753  421 23332  


Q ss_pred             --ccCCCeeEeeecCCc-eEE-EeeCC--CcEEEeecCCCCceeeee
Q psy12697        520 --FHSAPALDVDWQSNT-SFA-SCSTD--QHIHVCKLHSDKPVKSFE  560 (602)
Q Consensus       520 --~~~~~v~~~~~s~~~-~l~-~~~~d--~~i~iw~~~~~~~~~~~~  560 (602)
                        +|...+..+.|+||+ .++ +++.+  ..+.+||+.+++.+..+.
T Consensus       405 ~~~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~~l~d~~~g~~~~~~~  451 (719)
T 1z68_A          405 LRKERCQYYTASFSDYAKYYALVCYGPGIPISTLHDGRTDQEIKILE  451 (719)
T ss_dssp             TTTTTBCBEEEEECGGGSSEEEEECCBSSCEEEEECSSSCCEEEEEE
T ss_pred             cCCCCCceEEEEECCCCCEEEEEcCCCCCCeEEEEECCCCCEEEEee
Confidence              255678889999999 555 34333  468999998887665554

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.92  E-value=1.7e-23  Score=196.94  Aligned_cols=253  Identities=14%  Similarity=0.164  Sum_probs=189.1

Q ss_pred             EeCCCeEEEEcCCCcceeecccccCCeEEEEEccCCCEEEEEecCCcEEEEeCCC-CceeEEeeec-cCCeeeeeccCCC
Q psy12697        298 GSYDGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAAS-GQCEQQFSFH-SAPALDVDWQSNT  375 (602)
Q Consensus       298 ~~~dg~i~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~-~~~~~~~~~~-~~~~~~~~~~~~~  375 (602)
                      ++.++.|++||........+..|...+.+++|+|++++|++++ ++.|.+||+.+ ++.......+ ...+.++.|+|++
T Consensus        18 ~~~~~~i~~~d~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg   96 (297)
T 2ojh_A           18 GSMRSSIEIFNIRTRKMRVVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPDG   96 (297)
T ss_dssp             CCCCEEEEEEETTTTEEEEEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTTS
T ss_pred             CCcceeEEEEeCCCCceeeeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEECCCC
Confidence            4578999999998777777778999999999999999999876 88999999999 8776665554 3678889999987


Q ss_pred             e-EEEee--C--CCeEEEEEcCCCceeeEeccCCCCeEEEEECCCCCEEE-EEECCCeEEEEeCCC-CeeeEeecccccc
Q psy12697        376 S-FASCS--T--DQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLA-SCSDDMTLKIWSLDK-DNCVHDLQAHNKE  448 (602)
Q Consensus       376 ~-~~~~~--~--~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~dg~i~iwd~~~-~~~~~~~~~~~~~  448 (602)
                      . +++++  .  ...|..++..+++ ...+..+ ..+..++|+|+++.|+ +++.++.+++|+++. ......+.     
T Consensus        97 ~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~-----  169 (297)
T 2ojh_A           97 ALYAISDKVEFGKSAIYLLPSTGGT-PRLMTKN-LPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLT-----  169 (297)
T ss_dssp             SEEEEEECTTTSSCEEEEEETTCCC-CEECCSS-SSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEECC-----
T ss_pred             CEEEEEEeCCCCcceEEEEECCCCc-eEEeecC-CCccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEcc-----
Confidence            5 55555  2  2455555655554 3444433 3488999999999887 778899999998642 12222222     


Q ss_pred             EEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEe-CCCeEEEEeCC-CCceeeeecccCCCee
Q psy12697        449 IYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAG-VDKTTIIWDAA-SGQCEQQFSFHSAPAL  526 (602)
Q Consensus       449 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~-~dg~i~iwd~~-~~~~~~~~~~~~~~v~  526 (602)
                                                   .+...+.+++|+|+|++|+.++ .++.+.+|++. .+..+..+..|...+.
T Consensus       170 -----------------------------~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  220 (297)
T 2ojh_A          170 -----------------------------HGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDW  220 (297)
T ss_dssp             -----------------------------CSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEE
T ss_pred             -----------------------------cCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccC
Confidence                                         2455677888888999888766 58999999986 5666777777888899


Q ss_pred             EeeecCCc-eEEEeeCC-----------CcEEEeecCCCCceeeeecccccceEEEEecCCcEEEEEECCCCCeEEEecc
Q psy12697        527 DVDWQSNT-SFASCSTD-----------QHIHVCKLHSDKPVKSFEGHTTGQLVHSYKGTGGIFEVCWNSRGDKVGASAS  594 (602)
Q Consensus       527 ~~~~s~~~-~l~~~~~d-----------~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~  594 (602)
                      .++|+|++ .|++++.+           +.|++||+.+++.......         ..+...+..++|+|||++|++++.
T Consensus       221 ~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~---------~~~~~~~~~~~~spdg~~l~~~~~  291 (297)
T 2ojh_A          221 FPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDL---------FGGQGTMNSPNWSPDGDEFAYVRY  291 (297)
T ss_dssp             EEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEE---------EESTTTSCSCCBCTTSSEEEEEEE
T ss_pred             CeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeecc---------CCCCcccccceECCCCCEEEEEEe
Confidence            99999999 88877765           5699999987764332221         012356888999999999988877


Q ss_pred             CC
Q psy12697        595 DG  596 (602)
Q Consensus       595 dg  596 (602)
                      +.
T Consensus       292 ~~  293 (297)
T 2ojh_A          292 FP  293 (297)
T ss_dssp             CC
T ss_pred             cc
Confidence            64

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.92  E-value=3.6e-22  Score=193.13  Aligned_cols=269  Identities=10%  Similarity=0.051  Sum_probs=206.5

Q ss_pred             CCcceEEEEEcCCCCEEEEeeC-------CCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEeeCCCCC
Q psy12697        221 HESEVFICAWNPVKDFLASGSG-------DSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGS  293 (602)
Q Consensus       221 h~~~v~~~~~~~~~~~l~s~~~-------dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  293 (602)
                      ....+..++|+|+++++++++.       ++.|.+||..+++.....      .           ....+..++|+|+|+
T Consensus        39 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~------~-----------~~~~~~~~~~s~dg~  101 (353)
T 3vgz_A           39 VGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAI------H-----------NDLKPFGATINNTTQ  101 (353)
T ss_dssp             EESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEE------E-----------ESSCCCSEEEETTTT
T ss_pred             hccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEE------e-----------cCCCcceEEECCCCC
Confidence            3456889999999998888774       568999999876532111      1           124477899999999


Q ss_pred             eEEEE-eCCCeEEEEcCC-CcceeecccccC---------CeEEEEEccCCCEEEEEe--cCCcEEEEeCCCCceeEEee
Q psy12697        294 FLATG-SYDGYARIWTSD-GSLKSTLGQHKG---------PIFALKWNKRGNYILSAG--VDKTTIIWDAASGQCEQQFS  360 (602)
Q Consensus       294 ~l~~~-~~dg~i~i~~~~-~~~~~~~~~~~~---------~i~~~~~~~~~~~l~~~~--~dg~i~~wd~~~~~~~~~~~  360 (602)
                      +++++ ..++.|.+||.. ++....+..+..         .+.++.|+|+++++++++  .++.|.+||..+++....+.
T Consensus       102 ~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~  181 (353)
T 3vgz_A          102 TLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQ  181 (353)
T ss_dssp             EEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEEC
T ss_pred             EEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEec
Confidence            65554 557999999986 444455544332         268899999999888776  47889999999999888887


Q ss_pred             eccCCeeeeeccCCC-eEEEeeCCCeEEEEEcCCCceeeEecc----CCCCeEEEEECCCCCEEEEEECC-CeEEEEeCC
Q psy12697        361 FHSAPALDVDWQSNT-SFASCSTDQHIHVCKLHSDKPVKSFEG----HTNEVNAIKWDPQGLLLASCSDD-MTLKIWSLD  434 (602)
Q Consensus       361 ~~~~~~~~~~~~~~~-~~~~~~~~~~i~i~d~~~~~~~~~~~~----~~~~i~~~~~~~~~~~l~~~~~d-g~i~iwd~~  434 (602)
                      .....+..+.|++++ .++++..++.|.+||..+++.+..+..    +...+..++|+|+++++++++.+ +.|.+||+.
T Consensus       182 ~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~  261 (353)
T 3vgz_A          182 NTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTR  261 (353)
T ss_dssp             CCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETT
T ss_pred             CCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECC
Confidence            566668889999875 577888899999999999988877664    45568899999999987777654 999999999


Q ss_pred             CCeeeEeeccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEe-CCCeEEEEeCCCCc
Q psy12697        435 KDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAG-VDKTTIIWDAASGQ  513 (602)
Q Consensus       435 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~-~dg~i~iwd~~~~~  513 (602)
                      +++.+..+....                                    ...++|+|+|+++++++ .++.|.+||..+++
T Consensus       262 ~~~~~~~~~~~~------------------------------------~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~  305 (353)
T 3vgz_A          262 NGNILAKVAAPE------------------------------------SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYK  305 (353)
T ss_dssp             TCCEEEEEECSS------------------------------------CCCEEEETTTTEEEEEETTTTEEEEEETTTTE
T ss_pred             CCcEEEEEEcCC------------------------------------CceEEECCCCCEEEEEECCCCeEEEEECCCCe
Confidence            887766554211                                    13578889999666555 68999999999999


Q ss_pred             eeeeecccCCCeeEeeecCCc-eEEEeeCCC
Q psy12697        514 CEQQFSFHSAPALDVDWQSNT-SFASCSTDQ  543 (602)
Q Consensus       514 ~~~~~~~~~~~v~~~~~s~~~-~l~~~~~d~  543 (602)
                      .+..+... ..+.+++|+||| .++++..++
T Consensus       306 ~~~~~~~~-~~~~~~~~s~dg~~l~v~~~~~  335 (353)
T 3vgz_A          306 VVKTFDTP-THPNSLALSADGKTLYVSVKQK  335 (353)
T ss_dssp             EEEEEECC-SEEEEEEECTTSCEEEEEEECC
T ss_pred             EEEEEecC-CCCCeEEEcCCCCEEEEEEccc
Confidence            88887754 467899999999 676666554

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.92  E-value=4.8e-23  Score=197.89  Aligned_cols=271  Identities=9%  Similarity=0.029  Sum_probs=200.7

Q ss_pred             CEEEEeeCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCC---ceeEEeeCCCCCeEE-EEeCCCeEEEEcCC
Q psy12697        235 DFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNK---DVTSLDWNNNGSFLA-TGSYDGYARIWTSD  310 (602)
Q Consensus       235 ~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~i~~~~~~~~~~~l~-~~~~dg~i~i~~~~  310 (602)
                      +++++++.++.|.+||+.+++....      ..           ...   .+..++|+|+++.++ ++..++.|.+||..
T Consensus         2 ~~~v~~~~~~~v~~~d~~~~~~~~~------~~-----------~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~   64 (337)
T 1pby_B            2 DYILAPARPDKLVVIDTEKMAVDKV------IT-----------IADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLV   64 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEE------EE-----------CTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETT
T ss_pred             cEEEEcCCCCeEEEEECCCCcEEEE------EE-----------cCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECC
Confidence            4789999999999999987643110      00           112   478899999998765 55567899999986


Q ss_pred             -Ccceeeccc-c----cCCeEEEEEccCCCEEEEEe------------cCCcEEEEeCCCCceeEEeeeccCCeeeeecc
Q psy12697        311 -GSLKSTLGQ-H----KGPIFALKWNKRGNYILSAG------------VDKTTIIWDAASGQCEQQFSFHSAPALDVDWQ  372 (602)
Q Consensus       311 -~~~~~~~~~-~----~~~i~~~~~~~~~~~l~~~~------------~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~  372 (602)
                       ++....+.. +    ...+..++|+|+++++++++            .++.|.+||+.+++....+.. ...+..+.|+
T Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s  143 (337)
T 1pby_B           65 TGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWA  143 (337)
T ss_dssp             TCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEEC
T ss_pred             CCCeEeeEEcCCcccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-CCCcceeEEC
Confidence             444443332 1    22577899999999998886            579999999999888777665 4457788899


Q ss_pred             CCCe-EEEeeCCCeEEEEEcCCCceeeEeccCCCCeEEEEECCCCCEEEEEECCC------------------------e
Q psy12697        373 SNTS-FASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDM------------------------T  427 (602)
Q Consensus       373 ~~~~-~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg------------------------~  427 (602)
                      |++. ++++  ++.|.+||+.+++.+..+..+.. ...+.|+|+++.++..+.++                        .
T Consensus       144 ~dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  220 (337)
T 1pby_B          144 RDGSKLYGL--GRDLHVMDPEAGTLVEDKPIQSW-EAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTG  220 (337)
T ss_dssp             TTSSCEEEE--SSSEEEEETTTTEEEEEECSTTT-TTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEE
T ss_pred             CCCCEEEEe--CCeEEEEECCCCcEeeeeecccc-CCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccc
Confidence            9876 5555  68999999999988777765431 11237899998776554332                        3


Q ss_pred             EEEEeCCCCeeeEeeccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCCCeEEEE
Q psy12697        428 LKIWSLDKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIW  507 (602)
Q Consensus       428 i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iw  507 (602)
                      |.+||+.+++.. .+.                                ...+...+.+++|+|||++++++  ++.|.+|
T Consensus       221 v~~~d~~~~~~~-~~~--------------------------------~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~  265 (337)
T 1pby_B          221 LLTMDLETGEMA-MRE--------------------------------VRIMDVFYFSTAVNPAKTRAFGA--YNVLESF  265 (337)
T ss_dssp             EEEEETTTCCEE-EEE--------------------------------EEECSSCEEEEEECTTSSEEEEE--ESEEEEE
T ss_pred             eEEEeCCCCCce-Eee--------------------------------cCCCCCceeeEEECCCCCEEEEe--CCeEEEE
Confidence            577887776543 211                                11234566788999999999988  7999999


Q ss_pred             eCCCCceeeeecccCCCeeEeeecCCc-eEEEeeCCCcEEEeecCCCCceeeeecc
Q psy12697        508 DAASGQCEQQFSFHSAPALDVDWQSNT-SFASCSTDQHIHVCKLHSDKPVKSFEGH  562 (602)
Q Consensus       508 d~~~~~~~~~~~~~~~~v~~~~~s~~~-~l~~~~~d~~i~iw~~~~~~~~~~~~~~  562 (602)
                      |+.+++.+..+.. ...+.+++|+||+ +|++++.++.|++||+.+++.+..++..
T Consensus       266 d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~~~~~~~~~  320 (337)
T 1pby_B          266 DLEKNASIKRVPL-PHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDLP  320 (337)
T ss_dssp             ETTTTEEEEEEEC-SSCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEEEEEECG
T ss_pred             ECCCCcCcceecC-CCceeeEEECCCCCEEEEEcCCCcEEEEECcCCcEEEEEEcC
Confidence            9999988877764 3567899999999 8888889999999999998887777644

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.92  E-value=1.6e-22  Score=194.76  Aligned_cols=265  Identities=12%  Similarity=0.150  Sum_probs=184.7

Q ss_pred             eccceeeeecc-cc--eeeeeeeccCCceEEEEECCCCCeEEEeeCC-ceEEEEecC--CceeEEEeeccCceEEEEeCC
Q psy12697        118 HRLTLPLWDVE-RG--ECLNTLTRHTEPVYSVAFSPDGKFLASGSFD-KCVHIWSAR--TGQLVHSYKGTGGIFEVCWNS  191 (602)
Q Consensus       118 ~~~~i~vwd~~-~~--~~~~~l~~h~~~V~~~~~s~d~~~l~s~~~d-~~v~iwd~~--~~~~~~~~~~~~~~~~~~~~~  191 (602)
                      .++.|++||+. ++  +.+.. ..|...+.+++|+|+|++|++++.+ +.|.+|++.  +++....              
T Consensus        13 ~~~~v~~~~~~~~~~~~~~~~-~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~--------------   77 (343)
T 1ri6_A           13 ESQQIHVWNLNHEGALTLTQV-VDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFA--------------   77 (343)
T ss_dssp             GGTEEEEEEECTTSCEEEEEE-EECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEE--------------
T ss_pred             CCCeEEEEEECCCCcEEEeee-EecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeec--------------
Confidence            35789999995 34  33333 4578889999999999999998876 999999997  5543211              


Q ss_pred             CCCCCCCCCCccccccccccCCcceEeeCCCcceEEEEEcCCCCEEEEeeC-CCcEEEEeCCCCCCCCCccceEEEEEEe
Q psy12697        192 RGTPPNPPESMEVDASIEIPQSKATKLIGHESEVFICAWNPVKDFLASGSG-DSTARIWDMTDSTKKDPKELQIVLRHCI  270 (602)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~  270 (602)
                                              ..+..+. .+..++|+|++++|++++. ++.|.+||+..+..      ......  
T Consensus        78 ------------------------~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~------~~~~~~--  124 (343)
T 1ri6_A           78 ------------------------AESALPG-SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLP------VGVVDV--  124 (343)
T ss_dssp             ------------------------EEEECSS-CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEE------EEEEEE--
T ss_pred             ------------------------cccccCC-CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCcc------cccccc--
Confidence                                    1122223 6788999999998877665 88999999952210      001110  


Q ss_pred             cCCCcccCCCCceeEEeeCCCCCeEEEEe-CCCeEEEEcCCC-ccee-----ecc-cccCCeEEEEEccCCCEEEEEe-c
Q psy12697        271 SKGGTEVPSNKDVTSLDWNNNGSFLATGS-YDGYARIWTSDG-SLKS-----TLG-QHKGPIFALKWNKRGNYILSAG-V  341 (602)
Q Consensus       271 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~~~~~-~~~~-----~~~-~~~~~i~~~~~~~~~~~l~~~~-~  341 (602)
                            ......+.+++|+|+++++++++ .++.|.+|++.. ....     ... .....+..++|+|+++++++++ .
T Consensus       125 ------~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~  198 (343)
T 1ri6_A          125 ------VEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNEL  198 (343)
T ss_dssp             ------ECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETT
T ss_pred             ------ccCCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCC
Confidence                  11234588999999999888877 889999999864 3221     122 2345788999999999876655 7


Q ss_pred             CCcEEEEeCCC--Cce--eEEeeec------cCCeeeeeccCCCe-EE-EeeCCCeEEEEEcC--C--CceeeEeccCCC
Q psy12697        342 DKTTIIWDAAS--GQC--EQQFSFH------SAPALDVDWQSNTS-FA-SCSTDQHIHVCKLH--S--DKPVKSFEGHTN  405 (602)
Q Consensus       342 dg~i~~wd~~~--~~~--~~~~~~~------~~~~~~~~~~~~~~-~~-~~~~~~~i~i~d~~--~--~~~~~~~~~~~~  405 (602)
                      ++.+.+|++..  ++.  .......      ...+..++|+|++. ++ ++..++.|.+||+.  +  .+.+..+..+..
T Consensus       199 ~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~  278 (343)
T 1ri6_A          199 NSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQ  278 (343)
T ss_dssp             TTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSS
T ss_pred             CCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCCc
Confidence            89999999953  433  2222211      12455789999874 44 44578999999998  2  234445554444


Q ss_pred             CeEEEEECCCCCEEEEEE-CCCeEEEEeC--CCCe
Q psy12697        406 EVNAIKWDPQGLLLASCS-DDMTLKIWSL--DKDN  437 (602)
Q Consensus       406 ~i~~~~~~~~~~~l~~~~-~dg~i~iwd~--~~~~  437 (602)
                       +..++|+|+|++|++++ .++.|.+|++  .+++
T Consensus       279 -~~~~~~s~dg~~l~~~~~~~~~v~v~~~d~~~g~  312 (343)
T 1ri6_A          279 -PRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGL  312 (343)
T ss_dssp             -CCCEEECTTSSEEEEECTTTCEEEEEEEETTTTE
T ss_pred             -cceEEECCCCCEEEEecCCCCeEEEEEEcCCCce
Confidence             88999999999988888 5799999954  4553

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.91  E-value=8.1e-22  Score=188.74  Aligned_cols=276  Identities=12%  Similarity=0.089  Sum_probs=193.3

Q ss_pred             eCCCCCe-EEEEeCCCeEEEEcCC-CcceeecccccCCeEEEEEccCCCEEEEEec-CCcEEEEeCCCCce-eEEeeecc
Q psy12697        288 WNNNGSF-LATGSYDGYARIWTSD-GSLKSTLGQHKGPIFALKWNKRGNYILSAGV-DKTTIIWDAASGQC-EQQFSFHS  363 (602)
Q Consensus       288 ~~~~~~~-l~~~~~dg~i~i~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~i~~wd~~~~~~-~~~~~~~~  363 (602)
                      |.+++.. +++...++.|.+||.. ++....+..+...+ .++|+|+++++++++. ++.|.+||+.+++. ...+..+.
T Consensus         5 ~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~   83 (331)
T 3u4y_A            5 FQTTSNFGIVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQ   83 (331)
T ss_dssp             --CCCCEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEECS
T ss_pred             EcCCCCEEEEEecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccCC
Confidence            4454444 6777888999999987 55555555555666 9999999997777665 88999999999988 66777666


Q ss_pred             CCeeeeeccCCCeEEEeeCCC----eEEEEEcCCCceeeEeccCCCCeEEEEECCCCCEEEEE-ECCCe-EEEEeCCCCe
Q psy12697        364 APALDVDWQSNTSFASCSTDQ----HIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASC-SDDMT-LKIWSLDKDN  437 (602)
Q Consensus       364 ~~~~~~~~~~~~~~~~~~~~~----~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~-i~iwd~~~~~  437 (602)
                      .+..+++|+|++..+.++.++    .|.+||+.+++.+..+..+ ....+++|+|+|++|+++ ..++. |.+|++....
T Consensus        84 ~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g  162 (331)
T 3u4y_A           84 SSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIP-YDAVGIAISPNGNGLILIDRSSANTVRRFKIDADG  162 (331)
T ss_dssp             SCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECC-TTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTC
T ss_pred             CCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECC-CCccceEECCCCCEEEEEecCCCceEEEEEECCCC
Confidence            666659999987644444444    8999999999888777644 457899999999865554 55678 9999987643


Q ss_pred             eeEeeccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEE-eCCCeEEEEeCCCCce--
Q psy12697        438 CVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSA-GVDKTTIIWDAASGQC--  514 (602)
Q Consensus       438 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~~dg~i~iwd~~~~~~--  514 (602)
                      .+.....     .                        .. ........++|+|+|++++.+ ..++.|.+||+.+++.  
T Consensus       163 ~~~~~~~-----~------------------------~~-~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~  212 (331)
T 3u4y_A          163 VLFDTGQ-----E------------------------FI-SGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENIT  212 (331)
T ss_dssp             CEEEEEE-----E------------------------EE-CSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCE
T ss_pred             cEeecCC-----c------------------------cc-cCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccc
Confidence            3221110     0                        00 123346788999999966554 4689999999999988  


Q ss_pred             -eeeecccCCCeeEeeecCCc-eEEEe-eCCCcEEEeecCCCCc--eeeeecccccceEEEEecCCcEEEEEECCCCCeE
Q psy12697        515 -EQQFSFHSAPALDVDWQSNT-SFASC-STDQHIHVCKLHSDKP--VKSFEGHTTGQLVHSYKGTGGIFEVCWNSRGDKV  589 (602)
Q Consensus       515 -~~~~~~~~~~v~~~~~s~~~-~l~~~-~~d~~i~iw~~~~~~~--~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l  589 (602)
                       +..+.. ...+..++|+||| +++++ ..++.|.+||+.+++.  +..+......   .. ........++|+|||++|
T Consensus       213 ~~~~~~~-~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~---~~-~~~~~~~~~~~spdg~~l  287 (331)
T 3u4y_A          213 LLNAVGT-NNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLI---DP-RPLFGANQMALNKTETKL  287 (331)
T ss_dssp             EEEEEEC-SSCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCC---CC-GGGTTCCCEEECTTSSEE
T ss_pred             eeeeccC-CCCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeeccccccccc---CC-CCcccccceEECCCCCEE
Confidence             777764 4667899999999 55544 4678899999988765  3322211000   00 001223568999999998


Q ss_pred             EEecc-CCeEEe
Q psy12697        590 GASAS-DGSVFK  600 (602)
Q Consensus       590 ~~~~~-dg~v~i  600 (602)
                      ++++. ++.|.|
T Consensus       288 ~v~~~~~~~v~v  299 (331)
T 3u4y_A          288 FISANISRELKV  299 (331)
T ss_dssp             EEEETTTTEEEE
T ss_pred             EEecCCCCcEEE
Confidence            76665 557765

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.91  E-value=8.1e-23  Score=211.47  Aligned_cols=270  Identities=15%  Similarity=0.159  Sum_probs=198.6

Q ss_pred             cCCceEEEEECCCCCeEEEeeC-CceEEEEecCCceeEEEeeccCceEEEEeCCCCCCCCCCCCccccccccccCCcceE
Q psy12697        139 HTEPVYSVAFSPDGKFLASGSF-DKCVHIWSARTGQLVHSYKGTGGIFEVCWNSRGTPPNPPESMEVDASIEIPQSKATK  217 (602)
Q Consensus       139 h~~~V~~~~~s~d~~~l~s~~~-d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  217 (602)
                      +..+|.+++|+|||++||+++. ||+++||++.+++..                                         .
T Consensus        20 ~~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~-----------------------------------------~   58 (582)
T 3o4h_A           20 IAVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETV-----------------------------------------K   58 (582)
T ss_dssp             HHSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEE-----------------------------------------E
T ss_pred             hccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcE-----------------------------------------e
Confidence            3567999999999999999887 999999998766543                                         2


Q ss_pred             eeCCC-cceEEEEEcCCCCEEEEeeC---CCcEEEEeCCC--CCCCCCccceEEEEEEecCCCcccCCCCceeEEeeCCC
Q psy12697        218 LIGHE-SEVFICAWNPVKDFLASGSG---DSTARIWDMTD--STKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNN  291 (602)
Q Consensus       218 l~~h~-~~v~~~~~~~~~~~l~s~~~---dg~i~iw~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  291 (602)
                      +..|. ..+..++|+|| +.+++++.   +...++|.+..  .....  .+               .....+...+|+|+
T Consensus        59 lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~~~g~~~--~l---------------~~~~~~~~~~~s~d  120 (582)
T 3o4h_A           59 LNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTSRPGEEQ--RL---------------EAVKPMRILSGVDT  120 (582)
T ss_dssp             CCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETTSTTCCE--EC---------------TTSCSBEEEEEEEC
T ss_pred             eecccccccccccCCCC-eEEEEeccCCCCcceEEEEEeccCCCccc--cc---------------cCCCCceeeeeCCC
Confidence            23344 57899999999 77777765   55667776654  22110  00               01123446688888


Q ss_pred             CCe-EEEEeCCCeEEEEcCCCcceeecccccCCeEEEEEccCCCEEEEEecC----CcEEEEeCCCCceeEEeeeccCCe
Q psy12697        292 GSF-LATGSYDGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVD----KTTIIWDAASGQCEQQFSFHSAPA  366 (602)
Q Consensus       292 ~~~-l~~~~~dg~i~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d----g~i~~wd~~~~~~~~~~~~~~~~~  366 (602)
                      |+. +++...++.+.+||+.+.....+..+..  .+++|+|||++|++++.+    +.|.+||+.+++.. .+..+...+
T Consensus       121 g~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~--~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~-~l~~~~~~~  197 (582)
T 3o4h_A          121 GEAVVFTGATEDRVALYALDGGGLRELARLPG--FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLR-VFDSGEGSF  197 (582)
T ss_dssp             SSCEEEEEECSSCEEEEEEETTEEEEEEEESS--CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCE-EECCSSCEE
T ss_pred             CCeEEEEecCCCCceEEEccCCcEEEeecCCC--ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCce-EeecCCCcc
Confidence            754 3333444555699987655555544444  789999999999988777    78999999988765 556677788


Q ss_pred             eeeeccCCCe-EEEeeCCC--eEEEEEcCCCceeeEeccCCCCeEEEE--------ECCCCCEEEEEECCCeEEEEeCCC
Q psy12697        367 LDVDWQSNTS-FASCSTDQ--HIHVCKLHSDKPVKSFEGHTNEVNAIK--------WDPQGLLLASCSDDMTLKIWSLDK  435 (602)
Q Consensus       367 ~~~~~~~~~~-~~~~~~~~--~i~i~d~~~~~~~~~~~~~~~~i~~~~--------~~~~~~~l~~~~~dg~i~iwd~~~  435 (602)
                      ..++|+|++. ++++..++  .|++||+.+++.. .+.+|...+..++        |+|||.++++++.|+.+++|++  
T Consensus       198 ~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--  274 (582)
T 3o4h_A          198 SSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID--  274 (582)
T ss_dssp             EEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET--
T ss_pred             ccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCCCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE--
Confidence            9999999976 55566677  8999999998877 7777877777777        9999999999999999999998  


Q ss_pred             CeeeEeeccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCCC---eEEEEeCCC
Q psy12697        436 DNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDK---TTIIWDAAS  511 (602)
Q Consensus       436 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg---~i~iwd~~~  511 (602)
                      ++....                                     ..+.+.+++|+ +++++++++.+.   .+++||..+
T Consensus       275 g~~~~~-------------------------------------~~~~v~~~~~s-dg~~l~~~s~~~~p~~l~~~d~~~  315 (582)
T 3o4h_A          275 GERVEA-------------------------------------PQGNHGRVVLW-RGKLVTSHTSLSTPPRIVSLPSGE  315 (582)
T ss_dssp             TEEECC-------------------------------------CSSEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCC
T ss_pred             CCeecc-------------------------------------CCCceEEEEec-CCEEEEEEcCCCCCCeEEEEcCCC
Confidence            544321                                     12346678888 888898888774   477787654

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.90  E-value=8.8e-22  Score=190.08  Aligned_cols=287  Identities=8%  Similarity=0.092  Sum_probs=191.5

Q ss_pred             EEEECCCCCeEEEeeCCceEEEEecCCceeEEEeeccCceEEEEeCCCCCCCCCCCCccccccccccCCcceEeeCCCcc
Q psy12697        145 SVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKGTGGIFEVCWNSRGTPPNPPESMEVDASIEIPQSKATKLIGHESE  224 (602)
Q Consensus       145 ~~~~s~d~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~  224 (602)
                      .++++++++++++++.+++|.+||+.+++.+..+...                                       ....
T Consensus         4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~---------------------------------------~~~~   44 (349)
T 1jmx_B            4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMP---------------------------------------DKFG   44 (349)
T ss_dssp             CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECS---------------------------------------SCCS
T ss_pred             cccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecC---------------------------------------CCCC
Confidence            4568889999999999999999999999887654321                                       1124


Q ss_pred             eEEEEEcCCCCEEE-EeeCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEeeCCCCCeEEEEeCC--
Q psy12697        225 VFICAWNPVKDFLA-SGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFLATGSYD--  301 (602)
Q Consensus       225 v~~~~~~~~~~~l~-s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d--  301 (602)
                      +..++|+|++++++ +...++.|.+||+.+++.......          ..........+.+++|+|+|++++++..+  
T Consensus        45 ~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~----------~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~  114 (349)
T 1jmx_B           45 PGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANL----------SSVPGEVGRSMYSFAISPDGKEVYATVNPTQ  114 (349)
T ss_dssp             SCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEES----------CCSTTEEEECSSCEEECTTSSEEEEEEEEEE
T ss_pred             CceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEc----------ccccccccccccceEECCCCCEEEEEccccc
Confidence            66789999998665 555689999999987643211000          00000001237889999999999998865  


Q ss_pred             ----------CeEEEEcCCCc-c---eeecccccCCeEEEEEccCCCEEEEEecCCcEEEEeCCCCceeEEeeeccC---
Q psy12697        302 ----------GYARIWTSDGS-L---KSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSA---  364 (602)
Q Consensus       302 ----------g~i~i~~~~~~-~---~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~---  364 (602)
                                +.|.+||+... .   .... .+...+.+++|+|+++ +++++  +.|.+||+.+++....+.....   
T Consensus       115 ~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~~~s~dg~-l~~~~--~~i~~~d~~~~~~~~~~~~~~~~~~  190 (349)
T 1jmx_B          115 RLNDHYVVKPPRLEVFSTADGLEAKPVRTF-PMPRQVYLMRAADDGS-LYVAG--PDIYKMDVKTGKYTVALPLRNWNRK  190 (349)
T ss_dssp             ECSSCEEECCCEEEEEEGGGGGGBCCSEEE-ECCSSCCCEEECTTSC-EEEES--SSEEEECTTTCCEEEEECSTTCCCT
T ss_pred             ccccccccCCCeEEEEECCCccccceeeec-cCCCcccceeECCCCc-EEEcc--CcEEEEeCCCCceeccccccccCCc
Confidence                      89999997642 1   1222 2344688999999999 66654  3499999999988776654320   


Q ss_pred             ---------------------CeeeeeccCCCeEE--EeeCCCeEEEEEcCCCce-eeEeccCCCCeEEEEECC-CCCEE
Q psy12697        365 ---------------------PALDVDWQSNTSFA--SCSTDQHIHVCKLHSDKP-VKSFEGHTNEVNAIKWDP-QGLLL  419 (602)
Q Consensus       365 ---------------------~~~~~~~~~~~~~~--~~~~~~~i~i~d~~~~~~-~~~~~~~~~~i~~~~~~~-~~~~l  419 (602)
                                           ....+.+.+++...  .......+..++..+++. ...+..+...+..++|+| +++++
T Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l  270 (349)
T 1jmx_B          191 GYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQI  270 (349)
T ss_dssp             TBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEE
T ss_pred             cccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEE
Confidence                                 11112222211000  000001122245444432 122233556788999999 99999


Q ss_pred             EEEECCCeEEEEeCCCCeeeEeeccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEe
Q psy12697        420 ASCSDDMTLKIWSLDKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAG  499 (602)
Q Consensus       420 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~  499 (602)
                      +++  ++.|.+||+.+++.+..+...                                   ..+.+++|+|+|++|++++
T Consensus       271 ~~~--~~~v~~~d~~~~~~~~~~~~~-----------------------------------~~~~~~~~s~dg~~l~~~~  313 (349)
T 1jmx_B          271 YGV--LNRLAKYDLKQRKLIKAANLD-----------------------------------HTYYCVAFDKKGDKLYLGG  313 (349)
T ss_dssp             EEE--ESEEEEEETTTTEEEEEEECS-----------------------------------SCCCEEEECSSSSCEEEES
T ss_pred             EEE--cCeEEEEECccCeEEEEEcCC-----------------------------------CCccceEECCCCCEEEEec
Confidence            988  889999999988776655321                                   2345788888998888888


Q ss_pred             CCCeEEEEeCCCCceeeeeccc
Q psy12697        500 VDKTTIIWDAASGQCEQQFSFH  521 (602)
Q Consensus       500 ~dg~i~iwd~~~~~~~~~~~~~  521 (602)
                      .++.|.+||+.+++.+..+...
T Consensus       314 ~~~~v~v~d~~~~~~~~~~~~~  335 (349)
T 1jmx_B          314 TFNDLAVFNPDTLEKVKNIKLP  335 (349)
T ss_dssp             BSSEEEEEETTTTEEEEEEECS
T ss_pred             CCCeEEEEeccccceeeeeecC
Confidence            8999999999999988877654

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.90  E-value=1.7e-22  Score=209.10  Aligned_cols=258  Identities=13%  Similarity=0.107  Sum_probs=193.4

Q ss_pred             CceeEEeeCCCCCeEEEEeC-CCeEEEEcCCCcceeeccccc-CCeEEEEEccCCCEEEEEec---CCcEEEEeCCC---
Q psy12697        281 KDVTSLDWNNNGSFLATGSY-DGYARIWTSDGSLKSTLGQHK-GPIFALKWNKRGNYILSAGV---DKTTIIWDAAS---  352 (602)
Q Consensus       281 ~~i~~~~~~~~~~~l~~~~~-dg~i~i~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~~~~~---dg~i~~wd~~~---  352 (602)
                      .+|.+++|+|||+.||+++. +|.+.+|++++.....+..+. ..+..+.|+|| +.+++++.   +....+|.+..   
T Consensus        22 ~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~~~  100 (582)
T 3o4h_A           22 VEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVKLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTSRP  100 (582)
T ss_dssp             SCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEEECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETTST
T ss_pred             cchheeecCCCCCeEEEEEccCCceeEEEEcCCCcEeeecccccccccccCCCC-eEEEEeccCCCCcceEEEEEeccCC
Confidence            56999999999999999887 999999999877767776666 58999999999 77776664   45556654432   


Q ss_pred             CceeEEeeeccCCeeeeeccCC--CeEEEeeCCCeEEEEEcCCCceeeEeccCCCCeEEEEECCCCCEEEEEECC----C
Q psy12697        353 GQCEQQFSFHSAPALDVDWQSN--TSFASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDD----M  426 (602)
Q Consensus       353 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d----g  426 (602)
                      +... .+.... ......|+++  ..+++...++.+.+||+.+++.......+.   .+++|+|||++|++++.+    +
T Consensus       101 g~~~-~l~~~~-~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~---~~~~~spDG~~la~~~~~~~~~~  175 (582)
T 3o4h_A          101 GEEQ-RLEAVK-PMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPG---FGFVSDIRGDLIAGLGFFGGGRV  175 (582)
T ss_dssp             TCCE-ECTTSC-SBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESS---CEEEEEEETTEEEEEEEEETTEE
T ss_pred             Cccc-cccCCC-CceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCCC---ceEEECCCCCEEEEEEEcCCCCe
Confidence            2222 222211 2224455555  455666666666699999887655444333   789999999999988877    7


Q ss_pred             eEEEEeCCCCeeeEeeccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCCC--eE
Q psy12697        427 TLKIWSLDKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDK--TT  504 (602)
Q Consensus       427 ~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg--~i  504 (602)
                      .|++||+.+++.. .+..                                  |...+..++|||||++|+++..++  .|
T Consensus       176 ~i~~~d~~~g~~~-~l~~----------------------------------~~~~~~~~~~SpDG~~l~~~~~~~~~~i  220 (582)
T 3o4h_A          176 SLFTSNLSSGGLR-VFDS----------------------------------GEGSFSSASISPGMKVTAGLETAREARL  220 (582)
T ss_dssp             EEEEEETTTCCCE-EECC----------------------------------SSCEEEEEEECTTSCEEEEEECSSCEEE
T ss_pred             EEEEEcCCCCCce-Eeec----------------------------------CCCccccceECCCCCEEEEccCCCeeEE
Confidence            8999999877643 3333                                  445567778888999999888888  89


Q ss_pred             EEEeCCCCceeeeecccCCCeeEee--------ecCCc-eEEEeeCCCcEEEeecCCCCceeeeecccccceEEEEecCC
Q psy12697        505 IIWDAASGQCEQQFSFHSAPALDVD--------WQSNT-SFASCSTDQHIHVCKLHSDKPVKSFEGHTTGQLVHSYKGTG  575 (602)
Q Consensus       505 ~iwd~~~~~~~~~~~~~~~~v~~~~--------~s~~~-~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~  575 (602)
                      ++||+.+++.. .+..|...+..++        |+||| .+++++.|+.+++|++  ++....              ..+
T Consensus       221 ~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g~~~~~--------------~~~  283 (582)
T 3o4h_A          221 VTVDPRDGSVE-DLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID--GERVEA--------------PQG  283 (582)
T ss_dssp             EEECTTTCCEE-ECCCSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET--TEEECC--------------CSS
T ss_pred             EEEcCCCCcEE-EccCCCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE--CCeecc--------------CCC
Confidence            99999999887 7777888888888        99999 8899999999999998  443321              125


Q ss_pred             cEEEEEECCCCCeEEEeccCCe
Q psy12697        576 GIFEVCWNSRGDKVGASASDGS  597 (602)
Q Consensus       576 ~i~~l~~spdg~~l~~~~~dg~  597 (602)
                      .+.+++|+ ||+++++++.+..
T Consensus       284 ~v~~~~~s-dg~~l~~~s~~~~  304 (582)
T 3o4h_A          284 NHGRVVLW-RGKLVTSHTSLST  304 (582)
T ss_dssp             EEEEEEEE-TTEEEEEEEETTE
T ss_pred             ceEEEEec-CCEEEEEEcCCCC
Confidence            58899999 9999998887754

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.90  E-value=7.1e-22  Score=209.81  Aligned_cols=354  Identities=11%  Similarity=0.133  Sum_probs=215.4

Q ss_pred             ceEEEEECCCCCeEEEeeCCceEEEEecCCceeEEEeeccCceEEEEeCCCCCCCCCCCCccccccccccCCcceEeeCC
Q psy12697        142 PVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKGTGGIFEVCWNSRGTPPNPPESMEVDASIEIPQSKATKLIGH  221 (602)
Q Consensus       142 ~V~~~~~s~d~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h  221 (602)
                      ...+++|+|||++|+++  |++|++||+.+++....+..+.                                   ...+
T Consensus        18 ~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~-----------------------------------~~~~   60 (740)
T 4a5s_A           18 KLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENST-----------------------------------FDEF   60 (740)
T ss_dssp             CCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTT-----------------------------------TTTC
T ss_pred             cccccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechh-----------------------------------hhhh
Confidence            35578999999999996  9999999999998764433210                                   0011


Q ss_pred             CcceEEEEEcCCCCEEEEeeCC---------CcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEeeCCCC
Q psy12697        222 ESEVFICAWNPVKDFLASGSGD---------STARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNG  292 (602)
Q Consensus       222 ~~~v~~~~~~~~~~~l~s~~~d---------g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  292 (602)
                      ......++|||||++|+.++.+         +.+.+||+.+++....                 ..+...+...+|||||
T Consensus        61 ~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~~l-----------------~~~~~~~~~~~~SPdG  123 (740)
T 4a5s_A           61 GHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLITE-----------------ERIPNNTQWVTWSPVG  123 (740)
T ss_dssp             CSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCS-----------------SCCCTTEEEEEECSST
T ss_pred             cccccceEECCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEEEc-----------------ccCCCcceeeEECCCC
Confidence            1123457899999999998876         5567999988754321                 1124578999999999


Q ss_pred             CeEEEEeCCCeEEEEcCCCcceeecc--cccCCe-----------------EEEEEccCCCEEEEEecCCc-EEEEeCCC
Q psy12697        293 SFLATGSYDGYARIWTSDGSLKSTLG--QHKGPI-----------------FALKWNKRGNYILSAGVDKT-TIIWDAAS  352 (602)
Q Consensus       293 ~~l~~~~~dg~i~i~~~~~~~~~~~~--~~~~~i-----------------~~~~~~~~~~~l~~~~~dg~-i~~wd~~~  352 (602)
                      +.||.+ .++.|++|+..+.....+.  ++...+                 ..+.|||||++|+.++.|.+ +.+|++..
T Consensus       124 ~~la~~-~~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~  202 (740)
T 4a5s_A          124 HKLAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSF  202 (740)
T ss_dssp             TCEEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEE
T ss_pred             CEEEEE-ECCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEe
Confidence            999988 4689999998754433332  232222                 35899999999998876544 77776532


Q ss_pred             CceeEEeeeccCCeeeeeccCCCeEEEeeCCCeEEEEEcCC---Cc--eeeEec------cCCCCeEEEEECCCCCEEEE
Q psy12697        353 GQCEQQFSFHSAPALDVDWQSNTSFASCSTDQHIHVCKLHS---DK--PVKSFE------GHTNEVNAIKWDPQGLLLAS  421 (602)
Q Consensus       353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~---~~--~~~~~~------~~~~~i~~~~~~~~~~~l~~  421 (602)
                      .....   .+......+.+...+.-   .....|++||+.+   ++  ....+.      +|...+..++|+|||+.++.
T Consensus       203 ~~~~~---~~~~~~~~~~yp~~G~~---~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~  276 (740)
T 4a5s_A          203 YSDES---LQYPKTVRVPYPKAGAV---NPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQ  276 (740)
T ss_dssp             CCSTT---CSSCEEEEEECCBTTSC---CCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEE
T ss_pred             ecCCC---CCCCcceeecCCCCcCc---CCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEE
Confidence            11100   11122333344333210   1123689999998   73  223333      37778999999999997766


Q ss_pred             EEC----CCeEEEEeCCCCe----eeEeeccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCe-----EEEEE
Q psy12697        422 CSD----DMTLKIWSLDKDN----CVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPI-----FALKW  488 (602)
Q Consensus       422 ~~~----dg~i~iwd~~~~~----~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v-----~~i~~  488 (602)
                      ...    +..|++||+.+++    +......                              ....+...|     ....|
T Consensus       277 ~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l------------------------------~~~~~~~~v~~~~~~~p~f  326 (740)
T 4a5s_A          277 WLRRIQNYSVMDICDYDESSGRWNCLVARQH------------------------------IEMSTTGWVGRFRPSEPHF  326 (740)
T ss_dssp             EEESSTTEEEEEEEEEETTTTEEEECGGGCE------------------------------EEECSSSCSSSSSCCCCEE
T ss_pred             EeCCCCCEEEEEEEECCCCccccceeEEEEe------------------------------eeccCCceEccCcCCCceE
Confidence            543    3479999998876    2211100                              000122222     25679


Q ss_pred             ccCCCEEE-EEeC-C--CeEEEEeCCCCceeeeecccCCCeeEeeecCCc-eE-EEeeC----CCcEEEeec--CCCCce
Q psy12697        489 NKRGNYIL-SAGV-D--KTTIIWDAASGQCEQQFSFHSAPALDVDWQSNT-SF-ASCST----DQHIHVCKL--HSDKPV  556 (602)
Q Consensus       489 s~~~~~l~-s~~~-d--g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~-~l-~~~~~----d~~i~iw~~--~~~~~~  556 (602)
                      +|||+.|+ ..+. +  ..|++||+.+++...... ....+..+.. +|+ .| +++..    .+...||.+  ..+...
T Consensus       327 spDG~~l~~~~s~~~G~~~l~~~~~~~~~~~~lT~-g~~~v~~~~~-~d~~~i~f~~~~~~~~~~~~~ly~v~~~g~~~~  404 (740)
T 4a5s_A          327 TLDGNSFYKIISNEEGYRHICYFQIDKKDCTFITK-GTWEVIGIEA-LTSDYLYYISNEYKGMPGGRNLYKIQLIDYTKV  404 (740)
T ss_dssp             CTTSSEEEEEEECTTSCEEEEEEETTCSSCEESCC-SSSCEEEEEE-ECSSEEEEEESCGGGCTTCBEEEEEETTEEEEE
T ss_pred             cCCCCEEEEEEEcCCCceEEEEEECCCCceEeccc-CCEEEEEEEE-EeCCEEEEEEecCCCCCceeEEEEEECCCCCcc
Confidence            99999877 6654 3  468999998776554443 3445555442 335 44 44433    234455543  322211


Q ss_pred             eeeecccccceEEEEecCCcEEEEEECCCCCeEEEeccC
Q psy12697        557 KSFEGHTTGQLVHSYKGTGGIFEVCWNSRGDKVGASASD  595 (602)
Q Consensus       557 ~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~d  595 (602)
                      ..+.....+       .......+.|||||++++.....
T Consensus       405 ~~lt~~~~~-------~~~~~~~~~~S~dg~~~~~~~s~  436 (740)
T 4a5s_A          405 TCLSCELNP-------ERCQYYSVSFSKEAKYYQLRCSG  436 (740)
T ss_dssp             EESSTTTST-------TTBCBEEEEECTTSSEEEEEECS
T ss_pred             eeeccccCC-------CCCceEEEEECCCCCEEEEEeCC
Confidence            111100000       12457889999999987655443

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.90  E-value=5.8e-20  Score=178.02  Aligned_cols=300  Identities=14%  Similarity=0.115  Sum_probs=193.0

Q ss_pred             ccceeeeec--ccceeeeeeeccCCceEEEEECCCCCeEEEeeCC----ceEEEEecCC--ceeEEEeeccCceEEEEeC
Q psy12697        119 RLTLPLWDV--ERGECLNTLTRHTEPVYSVAFSPDGKFLASGSFD----KCVHIWSART--GQLVHSYKGTGGIFEVCWN  190 (602)
Q Consensus       119 ~~~i~vwd~--~~~~~~~~l~~h~~~V~~~~~s~d~~~l~s~~~d----~~v~iwd~~~--~~~~~~~~~~~~~~~~~~~  190 (602)
                      ...|.+|++  ++++.......|...+..++|+|||++|++++.+    +.|.+|++..  |+....             
T Consensus        26 ~~~i~~~~~d~~~g~~~~~~~~~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~-------------   92 (361)
T 3scy_A           26 SKGIYTFRFNEETGESLPLSDAEVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLL-------------   92 (361)
T ss_dssp             CCEEEEEEEETTTCCEEEEEEEECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEE-------------
T ss_pred             CCCEEEEEEeCCCCCEEEeecccCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEe-------------
Confidence            456788866  4565443333378888999999999999999876    7999998865  443211             


Q ss_pred             CCCCCCCCCCCccccccccccCCcceEeeCCCcceEEEEEcCCCCEEEEee-CCCcEEEEeCCCCCCCCCccceEEEEEE
Q psy12697        191 SRGTPPNPPESMEVDASIEIPQSKATKLIGHESEVFICAWNPVKDFLASGS-GDSTARIWDMTDSTKKDPKELQIVLRHC  269 (602)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~s~~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~  269 (602)
                                               .....+......+++  ++++|++++ .++.|.+|++..........  ....+.
T Consensus        93 -------------------------~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~--~~~~~~  143 (361)
T 3scy_A           93 -------------------------NTQKTMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPAS--DVIEFK  143 (361)
T ss_dssp             -------------------------EEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCS--EEEECC
T ss_pred             -------------------------eEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccc--eeEEcc
Confidence                                     122234455667777  787777766 58899999997654322111  111110


Q ss_pred             ecCCCcccCCCCceeEEeeCCCCCeEEEEe-CCCeEEEEcCCCc--------c------eeecccccCCeEEEEEccCCC
Q psy12697        270 ISKGGTEVPSNKDVTSLDWNNNGSFLATGS-YDGYARIWTSDGS--------L------KSTLGQHKGPIFALKWNKRGN  334 (602)
Q Consensus       270 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~~~~~~--------~------~~~~~~~~~~i~~~~~~~~~~  334 (602)
                      .............+.+++|+|+|+++++++ .++.|.+|+++..        +      ......+...+..++|+|+|+
T Consensus       144 g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~  223 (361)
T 3scy_A          144 GSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGK  223 (361)
T ss_dssp             CCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSS
T ss_pred             CCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCC
Confidence            000000111234568899999999776655 4789999986622        1      111223455678999999999


Q ss_pred             EEEEEe-cCCcEEEEeCCCCceeEEeeeccCCeeeeeccCCCeEEEeeCCCeEEEEEcCCCceeeEeccCCCCeEEEEEC
Q psy12697        335 YILSAG-VDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWD  413 (602)
Q Consensus       335 ~l~~~~-~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~  413 (602)
                      ++++++ .++.|.+||+.+++......                                    +.....+......++|+
T Consensus       224 ~l~v~~~~~~~v~v~~~~~g~~~~~~~------------------------------------~~~~~~~~~~~~~i~~s  267 (361)
T 3scy_A          224 FAYLINEIGGTVIAFRYADGMLDEIQT------------------------------------VAADTVNAQGSGDIHLS  267 (361)
T ss_dssp             EEEEEETTTCEEEEEEEETTEEEEEEE------------------------------------EESCSSCCCCEEEEEEC
T ss_pred             EEEEEcCCCCeEEEEEecCCceEEeEE------------------------------------EecCCCCCCCcccEEEC
Confidence            888777 58899999987654321110                                    01111223446789999


Q ss_pred             CCCCEEEEEECC--CeEEEEeCC--CCee--eEeeccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEE
Q psy12697        414 PQGLLLASCSDD--MTLKIWSLD--KDNC--VHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALK  487 (602)
Q Consensus       414 ~~~~~l~~~~~d--g~i~iwd~~--~~~~--~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~  487 (602)
                      |+|++|+++..+  +.|.+|++.  +++.  +..+..                                   ...+.+++
T Consensus       268 pdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-----------------------------------g~~~~~~~  312 (361)
T 3scy_A          268 PDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT-----------------------------------GIHPRNFI  312 (361)
T ss_dssp             TTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC-----------------------------------SSCCCEEE
T ss_pred             CCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC-----------------------------------CCCCceEE
Confidence            999998777665  899999986  3321  111111                                   23456788


Q ss_pred             EccCCCEEEEEe-CCCeEEEE--eCCCCceeeee-cccCCCeeEeeec
Q psy12697        488 WNKRGNYILSAG-VDKTTIIW--DAASGQCEQQF-SFHSAPALDVDWQ  531 (602)
Q Consensus       488 ~s~~~~~l~s~~-~dg~i~iw--d~~~~~~~~~~-~~~~~~v~~~~~s  531 (602)
                      |+|||++|++++ .++.|.+|  |..+++..... ..+...+.|+.|.
T Consensus       313 ~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~~~~p~~v~~~  360 (361)
T 3scy_A          313 ITPNGKYLLVACRDTNVIQIFERDQATGLLTDIKKDIKVDKPVCLKFV  360 (361)
T ss_dssp             ECTTSCEEEEEETTTTEEEEEEECTTTCCEEECSCCEECSSEEEEEEE
T ss_pred             ECCCCCEEEEEECCCCCEEEEEEECCCCcEeecceeeeCCCCeEEEEc
Confidence            999999988887 57899995  55677766543 2345568888885

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.90  E-value=2.1e-21  Score=190.45  Aligned_cols=307  Identities=11%  Similarity=-0.007  Sum_probs=200.5

Q ss_pred             eeeeecccceeeeeeeccCCceEE-----EEECCCCCeEEEeeC-Cc--eEEEEecCCceeEEEeeccCceEEEEeCCCC
Q psy12697        122 LPLWDVERGECLNTLTRHTEPVYS-----VAFSPDGKFLASGSF-DK--CVHIWSARTGQLVHSYKGTGGIFEVCWNSRG  193 (602)
Q Consensus       122 i~vwd~~~~~~~~~l~~h~~~V~~-----~~~s~d~~~l~s~~~-d~--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  193 (602)
                      ...+|..++..+..+..|......     .+|||||++|+.++. ++  .|.+||+.+++.....               
T Consensus        12 ~~~~~~~~g~~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt---------------   76 (388)
T 3pe7_A           12 DTYQDASTGAQVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLT---------------   76 (388)
T ss_dssp             EEEECTTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECC---------------
T ss_pred             eEEecCCCCcceEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEee---------------
Confidence            345688889999999998877776     899999999999887 66  4888899888765322               


Q ss_pred             CCCCCCCCccccccccccCCcceEeeCCCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCccceEEEEEEecCC
Q psy12697        194 TPPNPPESMEVDASIEIPQSKATKLIGHESEVFICAWNPVKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKG  273 (602)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~  273 (602)
                                               .++...+....|+||++.|+.++.++.|.+||+.+++...      ...      
T Consensus        77 -------------------------~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~------~~~------  119 (388)
T 3pe7_A           77 -------------------------EGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENV------VYQ------  119 (388)
T ss_dssp             -------------------------CSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEE------EEE------
T ss_pred             -------------------------eCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCccee------eee------
Confidence                                     2344444457899999999999999999999998875321      100      


Q ss_pred             CcccCCCCceeEE--eeCCCCCeEEEE----------------------eCCCeEEEEcCCCcceeecccccCCeEEEEE
Q psy12697        274 GTEVPSNKDVTSL--DWNNNGSFLATG----------------------SYDGYARIWTSDGSLKSTLGQHKGPIFALKW  329 (602)
Q Consensus       274 ~~~~~~~~~i~~~--~~~~~~~~l~~~----------------------~~dg~i~i~~~~~~~~~~~~~~~~~i~~~~~  329 (602)
                          .+...+...  .++|++++++..                      ..++.|.+||+.+.....+..+...+..+.|
T Consensus       120 ----~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~  195 (388)
T 3pe7_A          120 ----VPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVILQENQWLGHPIY  195 (388)
T ss_dssp             ----CCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEEEEEESSCEEEEEE
T ss_pred             ----chhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceEEeecCCccccccEE
Confidence                011223223  348999888743                      2346799999886666666677778999999


Q ss_pred             cc-CCCEEEEEecCCcEEEEeCCCCceeEEeeeccCCeeeeeccCCCeEEEeeCCCeEEEEEcCCCceeeEeccCC--CC
Q psy12697        330 NK-RGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEGHT--NE  406 (602)
Q Consensus       330 ~~-~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~--~~  406 (602)
                      +| +|+.|+.+..++.    +                               .....|.++|...++. ..+..+.  ..
T Consensus       196 sp~dg~~l~~~~~~~~----~-------------------------------~~~~~l~~~d~~~~~~-~~l~~~~~~~~  239 (388)
T 3pe7_A          196 RPYDDSTVAFCHEGPH----D-------------------------------LVDARMWLINEDGTNM-RKVKTHAEGES  239 (388)
T ss_dssp             ETTEEEEEEEEECSCT----T-------------------------------TSSCSEEEEETTSCCC-EESCCCCTTEE
T ss_pred             CCCCCCEEEEEEecCC----C-------------------------------CCcceEEEEeCCCCce-EEeeeCCCCcc
Confidence            99 9998887765320    0                               0012233334333222 2222222  24


Q ss_pred             eEEEEECCCCCEEEEEECC-----CeEEEEeCCCCeeeEeeccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccC
Q psy12697        407 VNAIKWDPQGLLLASCSDD-----MTLKIWSLDKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKG  481 (602)
Q Consensus       407 i~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  481 (602)
                      +...+|+|||+.|+..+.+     +.|++||+.+++....... .. .....+.++                        
T Consensus       240 ~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~-~~-~~~~~~~~~------------------------  293 (388)
T 3pe7_A          240 CTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSM-PA-CSHLMSNYD------------------------  293 (388)
T ss_dssp             EEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEE-CC-EEEEEECTT------------------------
T ss_pred             cccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcC-CC-ceeeeecCC------------------------
Confidence            6778999999987665432     2499999998764322111 11 111112121                        


Q ss_pred             CeEEEEEccCCCEEEEE---------eCCCeEEEEeCCCCceeeeecccCC-----------CeeEeeecCCc-eEEEee
Q psy12697        482 PIFALKWNKRGNYILSA---------GVDKTTIIWDAASGQCEQQFSFHSA-----------PALDVDWQSNT-SFASCS  540 (602)
Q Consensus       482 ~v~~i~~s~~~~~l~s~---------~~dg~i~iwd~~~~~~~~~~~~~~~-----------~v~~~~~s~~~-~l~~~~  540 (602)
                         .+.|+|||++|+..         ..+..|++||+.+++. ..+..+..           .+.+++|+||| .|+..+
T Consensus       294 ---~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s  369 (388)
T 3pe7_A          294 ---GSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQ-HRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTS  369 (388)
T ss_dssp             ---SSEEEEEECCC------------CCCCEEEEEETTTTEE-EEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEE
T ss_pred             ---CCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCce-EEeccccCcccccccccccCCCCccCCCCCCEEEEEe
Confidence               12688999888754         4567899999998765 44444555           57889999999 666544


Q ss_pred             -CCCcEEEeec
Q psy12697        541 -TDQHIHVCKL  550 (602)
Q Consensus       541 -~d~~i~iw~~  550 (602)
                       .++...+|.+
T Consensus       370 ~~~g~~~l~~~  380 (388)
T 3pe7_A          370 DVHGKPALYLA  380 (388)
T ss_dssp             CTTSSCEEEEE
T ss_pred             cCCCceeEEEE
Confidence             5677777764

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.90  E-value=6.9e-22  Score=210.14  Aligned_cols=320  Identities=15%  Similarity=0.119  Sum_probs=217.3

Q ss_pred             ccceeeeecccceeeeeeeccCC---ceEEEEECCCCCeEEEeeC---------CceEEEEecCCceeEEEeeccCceEE
Q psy12697        119 RLTLPLWDVERGECLNTLTRHTE---PVYSVAFSPDGKFLASGSF---------DKCVHIWSARTGQLVHSYKGTGGIFE  186 (602)
Q Consensus       119 ~~~i~vwd~~~~~~~~~l~~h~~---~V~~~~~s~d~~~l~s~~~---------d~~v~iwd~~~~~~~~~~~~~~~~~~  186 (602)
                      +++|++||+.+++....+.+|..   .|.+++|||||++||+++.         ++.|++||+.+++.+...+       
T Consensus        35 d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~-------  107 (719)
T 1z68_A           35 DNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNE-------  107 (719)
T ss_dssp             TSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSC-------
T ss_pred             CCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCcccccee-------
Confidence            57899999999998888877765   4999999999999999876         7999999999887521000       


Q ss_pred             EEeCCCCCCCCCCCCccccccccccCCcceEeeCCCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCccceEEE
Q psy12697        187 VCWNSRGTPPNPPESMEVDASIEIPQSKATKLIGHESEVFICAWNPVKDFLASGSGDSTARIWDMTDSTKKDPKELQIVL  266 (602)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~  266 (602)
                                                        -...+..++|+|||+.|+++. ++.|++|++.++.........   
T Consensus       108 ----------------------------------l~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~---  149 (719)
T 1z68_A          108 ----------------------------------LPRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNG---  149 (719)
T ss_dssp             ----------------------------------CCSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCC---
T ss_pred             ----------------------------------cCcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCC---
Confidence                                              013477899999999999886 789999999876542110000   


Q ss_pred             EEEecCCCcccCCC---------CceeEEeeCCCCCeEEEEeCCC----------------------------------e
Q psy12697        267 RHCISKGGTEVPSN---------KDVTSLDWNNNGSFLATGSYDG----------------------------------Y  303 (602)
Q Consensus       267 ~~~~~~~~~~~~~~---------~~i~~~~~~~~~~~l~~~~~dg----------------------------------~  303 (602)
                          ........+.         ....+++|+|||+.|++++.|.                                  .
T Consensus       150 ----~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~  225 (719)
T 1z68_A          150 ----RENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVR  225 (719)
T ss_dssp             ----BTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEE
T ss_pred             ----CcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeE
Confidence                0000000011         1225899999999999987652                                  7


Q ss_pred             EEEEcCCCcce---------eecccccCCeEEEEEccCCCEEEEEecC----CcEEEEe----CCCCceeEEe----eec
Q psy12697        304 ARIWTSDGSLK---------STLGQHKGPIFALKWNKRGNYILSAGVD----KTTIIWD----AASGQCEQQF----SFH  362 (602)
Q Consensus       304 i~i~~~~~~~~---------~~~~~~~~~i~~~~~~~~~~~l~~~~~d----g~i~~wd----~~~~~~~~~~----~~~  362 (602)
                      |++||+.+...         ..+..|...+..++|+||++.+++....    ..|.+||    +.++++...+    ..+
T Consensus       226 l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~  305 (719)
T 1z68_A          226 IFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESR  305 (719)
T ss_dssp             EEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECS
T ss_pred             EEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccC
Confidence            88999886543         1233577889999999998766664433    2488899    8877766555    345


Q ss_pred             cCCee-----eeeccCCCe-EE--EeeCCC--eEEEEEcCCCceeeEeccCCCCeEEEEECCCCCEEEEEECC-----Ce
Q psy12697        363 SAPAL-----DVDWQSNTS-FA--SCSTDQ--HIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDD-----MT  427 (602)
Q Consensus       363 ~~~~~-----~~~~~~~~~-~~--~~~~~~--~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----g~  427 (602)
                      ...+.     .+.|+|++. ++  +...+|  .|++||+.+++ ...+..+...+..+.++ +++.|+..+.+     +.
T Consensus       306 ~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~-~~~lt~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~  383 (719)
T 1z68_A          306 TGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVEN-AIQITSGKWEAINIFRV-TQDSLFYSSNEFEEYPGR  383 (719)
T ss_dssp             SSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTT-CEECSCSSSCEEEEEEE-CSSEEEEEESCGGGCTTC
T ss_pred             CceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCc-eEecccCceEEEEEEEE-eCCEEEEEEecCCCCCce
Confidence            55555     788999875 33  343455  57777877766 45566666678887777 88877777665     77


Q ss_pred             EEEEeCCC--Ce-eeEeeccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEE-eCC--
Q psy12697        428 LKIWSLDK--DN-CVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSA-GVD--  501 (602)
Q Consensus       428 i~iwd~~~--~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~~d--  501 (602)
                      .++|.+..  +. ....+..                              .+.++...+..+.|+|++++++.. +.+  
T Consensus       384 ~~l~~~~~~~g~~~~~~l~~------------------------------~~~~~~~~~~~~~~s~dg~~l~~~~s~~~~  433 (719)
T 1z68_A          384 RNIYRISIGSYPPSKKCVTC------------------------------HLRKERCQYYTASFSDYAKYYALVCYGPGI  433 (719)
T ss_dssp             BEEEEEECSSSSCCEEESST------------------------------TTTTTTBCBEEEEECGGGSSEEEEECCBSS
T ss_pred             EEEEEEeCCCCCCCceeccC------------------------------ccCCCCCceEEEEECCCCCEEEEEcCCCCC
Confidence            88888653  21 1111110                              011244556778888888877743 333  


Q ss_pred             CeEEEEeCCCCceeeeec
Q psy12697        502 KTTIIWDAASGQCEQQFS  519 (602)
Q Consensus       502 g~i~iwd~~~~~~~~~~~  519 (602)
                      ..+.+||+.+++++..+.
T Consensus       434 p~~~l~d~~~g~~~~~~~  451 (719)
T 1z68_A          434 PISTLHDGRTDQEIKILE  451 (719)
T ss_dssp             CEEEEECSSSCCEEEEEE
T ss_pred             CeEEEEECCCCCEEEEee
Confidence            468999998888665544

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.89  E-value=2e-20  Score=180.22  Aligned_cols=275  Identities=11%  Similarity=0.083  Sum_probs=184.9

Q ss_pred             ceeeeec--ccceeee-eeeccCCceEEEEECCCCCeEEEeeC---CceEEEEecCCceeEEEeeccCceEEEEeCCCCC
Q psy12697        121 TLPLWDV--ERGECLN-TLTRHTEPVYSVAFSPDGKFLASGSF---DKCVHIWSARTGQLVHSYKGTGGIFEVCWNSRGT  194 (602)
Q Consensus       121 ~i~vwd~--~~~~~~~-~l~~h~~~V~~~~~s~d~~~l~s~~~---d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (602)
                      .|.+|++  ++++... ....+...+..++|+|||+ |++++.   ++.|.+||+.+++....                 
T Consensus        17 ~i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~-----------------   78 (347)
T 3hfq_A           17 GIYQGTLDTTAKTLTNDGLLAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKL-----------------   78 (347)
T ss_dssp             EEEEEEEETTTTEEEEEEEEEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEE-----------------
T ss_pred             CEEEEEEcCCCCeEEEeeeeeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEe-----------------
Confidence            4555554  5666544 3455677888999999999 555544   68999999977763211                 


Q ss_pred             CCCCCCCccccccccccCCcceEeeCCCcceEEEEEcCCCCEEEEee-CCCcEEEEeCCCCCCCCCccceEEEEEEecCC
Q psy12697        195 PPNPPESMEVDASIEIPQSKATKLIGHESEVFICAWNPVKDFLASGS-GDSTARIWDMTDSTKKDPKELQIVLRHCISKG  273 (602)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~s~~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~  273 (602)
                                           ..+..+...+..++|+|++++|++++ .++.+.+|++......     ...........
T Consensus        79 ---------------------~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~-----~~~~~~~~~~~  132 (347)
T 3hfq_A           79 ---------------------NTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGAL-----TLTDTVQHSGH  132 (347)
T ss_dssp             ---------------------EEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCE-----EEEEEEECCCC
T ss_pred             ---------------------eeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCe-----eecceeecCCC
Confidence                                 22234566788899999999888887 6899999999643221     11111100000


Q ss_pred             C-cccCCCCceeEEeeCCCCCeEEEEeCCCeEEEEcCC--Cccee--eccc-ccCCeEEEEEccCCCEEEE-EecCCcEE
Q psy12697        274 G-TEVPSNKDVTSLDWNNNGSFLATGSYDGYARIWTSD--GSLKS--TLGQ-HKGPIFALKWNKRGNYILS-AGVDKTTI  346 (602)
Q Consensus       274 ~-~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~--~~~~~--~~~~-~~~~i~~~~~~~~~~~l~~-~~~dg~i~  346 (602)
                      + ........+.+++|+|+|+++++...++.|.+|++.  +....  .+.. ....+..++|+|+|+++++ ...++.+.
T Consensus       133 ~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~  212 (347)
T 3hfq_A          133 GPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIA  212 (347)
T ss_dssp             CSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEE
T ss_pred             CCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEE
Confidence            0 001123458899999999966666678899999987  32221  1112 2336788999999997766 45678999


Q ss_pred             EEeCCC--CceeE--Eeeecc------CCeeeeeccCCCe-E-EEeeCCCeEEEEEcCC---CceeeEeccCCCCeEEEE
Q psy12697        347 IWDAAS--GQCEQ--QFSFHS------APALDVDWQSNTS-F-ASCSTDQHIHVCKLHS---DKPVKSFEGHTNEVNAIK  411 (602)
Q Consensus       347 ~wd~~~--~~~~~--~~~~~~------~~~~~~~~~~~~~-~-~~~~~~~~i~i~d~~~---~~~~~~~~~~~~~i~~~~  411 (602)
                      +|++..  ++...  .+....      ..+..++|+|++. + ++...++.|.+|++..   .+.+..+..+...+..++
T Consensus       213 v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~  292 (347)
T 3hfq_A          213 SLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFD  292 (347)
T ss_dssp             EEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEE
T ss_pred             EEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEE
Confidence            998874  54322  222222      3477899999976 3 4555689999999973   245556666667789999


Q ss_pred             ECCCCCEEEEEECC-CeEEEE--eCCCCeee
Q psy12697        412 WDPQGLLLASCSDD-MTLKIW--SLDKDNCV  439 (602)
Q Consensus       412 ~~~~~~~l~~~~~d-g~i~iw--d~~~~~~~  439 (602)
                      |+|+|++|++++.+ +.|.+|  |..+++..
T Consensus       293 ~spdg~~l~v~~~~~~~v~v~~~d~~tg~l~  323 (347)
T 3hfq_A          293 LDPTEAFVVVVNQNTDNATLYARDLTSGKLS  323 (347)
T ss_dssp             ECTTSSEEEEEETTTTEEEEEEECTTTCCEE
T ss_pred             ECCCCCEEEEEEcCCCcEEEEEEeCCCCeEE
Confidence            99999999888765 899999  54555543

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.88  E-value=3.5e-20  Score=178.84  Aligned_cols=270  Identities=9%  Similarity=0.012  Sum_probs=189.8

Q ss_pred             EEeeCCCCCeEEEEeCCCeEEEEcCCC-cceeeccccc-CCeEEEEEccCCCEEE-EEecCCcEEEEeCCCCceeEEeee
Q psy12697        285 SLDWNNNGSFLATGSYDGYARIWTSDG-SLKSTLGQHK-GPIFALKWNKRGNYIL-SAGVDKTTIIWDAASGQCEQQFSF  361 (602)
Q Consensus       285 ~~~~~~~~~~l~~~~~dg~i~i~~~~~-~~~~~~~~~~-~~i~~~~~~~~~~~l~-~~~~dg~i~~wd~~~~~~~~~~~~  361 (602)
                      .+++++++.++++++.++.|.+||... +....+..+. ..+..++|+|++++++ +...++.|.+||+.+++....+..
T Consensus         4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~   83 (349)
T 1jmx_B            4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANL   83 (349)
T ss_dssp             CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEES
T ss_pred             cccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEc
Confidence            456788899999999999999999874 4444444332 2578999999998765 445689999999999988877664


Q ss_pred             cc------CCeeeeeccCCCe-EEEeeCC------------CeEEEEEcCCCce---eeEeccCCCCeEEEEECCCCCEE
Q psy12697        362 HS------APALDVDWQSNTS-FASCSTD------------QHIHVCKLHSDKP---VKSFEGHTNEVNAIKWDPQGLLL  419 (602)
Q Consensus       362 ~~------~~~~~~~~~~~~~-~~~~~~~------------~~i~i~d~~~~~~---~~~~~~~~~~i~~~~~~~~~~~l  419 (602)
                      ..      ..+..+.|+|++. ++++..+            +.|.+||+.+++.   +..+. +...+.+++|+|+|+ +
T Consensus        84 ~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~s~dg~-l  161 (349)
T 1jmx_B           84 SSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFP-MPRQVYLMRAADDGS-L  161 (349)
T ss_dssp             CCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEE-CCSSCCCEEECTTSC-E
T ss_pred             ccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeecc-CCCcccceeECCCCc-E
Confidence            33      2367889999864 5555544            8999999988543   33333 334688999999999 5


Q ss_pred             EEEECCCeEEEEeCCCCeeeEeeccccc------------------------cEEEEEECCCCCCCCCCCcceeeee---
Q psy12697        420 ASCSDDMTLKIWSLDKDNCVHDLQAHNK------------------------EIYTIKWSPTGPETSNPNMSLIFIL---  472 (602)
Q Consensus       420 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~------------------------~i~~~~~~~~~~~~~~~~~~~~~~~---  472 (602)
                      ++++.  .|.+||+.+++.+..+.....                        ....+++++++..............   
T Consensus       162 ~~~~~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~  239 (349)
T 1jmx_B          162 YVAGP--DIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVD  239 (349)
T ss_dssp             EEESS--SEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEE
T ss_pred             EEccC--cEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEe
Confidence            55543  499999999887776653320                        2344566654422111100000000   


Q ss_pred             -------eeccCCccCCeEEEEEcc-CCCEEEEEeCCCeEEEEeCCCCceeeeecccCCCeeEeeecCCc-eEEEeeCCC
Q psy12697        473 -------KSTLGQHKGPIFALKWNK-RGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNT-SFASCSTDQ  543 (602)
Q Consensus       473 -------~~~~~~~~~~v~~i~~s~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~-~l~~~~~d~  543 (602)
                             ......+...+..++|+| +|++++++  ++.|.+||+.+++.+..+.. ...+.+++|+|++ .|++++.++
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~  316 (349)
T 1jmx_B          240 LKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANL-DHTYYCVAFDKKGDKLYLGGTFN  316 (349)
T ss_dssp             TTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEEC-SSCCCEEEECSSSSCEEEESBSS
T ss_pred             ccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEcC-CCCccceEECCCCCEEEEecCCC
Confidence                   011122445778999999 99999988  88999999999998877763 3457899999999 888888899


Q ss_pred             cEEEeecCCCCceeeeec
Q psy12697        544 HIHVCKLHSDKPVKSFEG  561 (602)
Q Consensus       544 ~i~iw~~~~~~~~~~~~~  561 (602)
                      .|++||+.+++.+..++.
T Consensus       317 ~v~v~d~~~~~~~~~~~~  334 (349)
T 1jmx_B          317 DLAVFNPDTLEKVKNIKL  334 (349)
T ss_dssp             EEEEEETTTTEEEEEEEC
T ss_pred             eEEEEeccccceeeeeec
Confidence            999999988877666543

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.88  E-value=9.2e-20  Score=175.60  Aligned_cols=248  Identities=14%  Similarity=0.128  Sum_probs=168.8

Q ss_pred             CceeEEeeCCCCCeEEEEeC---CCeEEEEcCCCcc---eeecccccCCeEEEEEccCCCEEEEEe-cCCcEEEEeCCC-
Q psy12697        281 KDVTSLDWNNNGSFLATGSY---DGYARIWTSDGSL---KSTLGQHKGPIFALKWNKRGNYILSAG-VDKTTIIWDAAS-  352 (602)
Q Consensus       281 ~~i~~~~~~~~~~~l~~~~~---dg~i~i~~~~~~~---~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~~wd~~~-  352 (602)
                      ..+..++|+|+|+ +++++.   ++.|.+|++.+..   ...+..+...+..++|+|+|++|++++ .++.+.+|++.. 
T Consensus        40 ~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~  118 (347)
T 3hfq_A           40 QNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAAD  118 (347)
T ss_dssp             SCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTT
T ss_pred             CCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCC
Confidence            5578899999999 555544   6899999986433   233344677888999999999998887 678999999963 


Q ss_pred             Cce--eEEeeec---------cCCeeeeeccCCCeEEEe-eCCCeEEEEEcC-CCcee--eEeccC-CCCeEEEEECCCC
Q psy12697        353 GQC--EQQFSFH---------SAPALDVDWQSNTSFASC-STDQHIHVCKLH-SDKPV--KSFEGH-TNEVNAIKWDPQG  416 (602)
Q Consensus       353 ~~~--~~~~~~~---------~~~~~~~~~~~~~~~~~~-~~~~~i~i~d~~-~~~~~--~~~~~~-~~~i~~~~~~~~~  416 (602)
                      +..  +..+...         ...+..++|+|++.++++ ..++.|.+|++. +++..  ..+..+ ...+..++|+|+|
T Consensus       119 g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg  198 (347)
T 3hfq_A          119 GALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDG  198 (347)
T ss_dssp             SCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTS
T ss_pred             CCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCC
Confidence            332  2222211         123677999998765544 457889999998 44432  222222 3367889999999


Q ss_pred             CEEEEE-ECCCeEEEEeCCC--CeeeEeeccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCC
Q psy12697        417 LLLASC-SDDMTLKIWSLDK--DNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGN  493 (602)
Q Consensus       417 ~~l~~~-~~dg~i~iwd~~~--~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~  493 (602)
                      ++|+++ ..++.|.+|++..  ++....        ..+...+.+                  ......+..++|+|||+
T Consensus       199 ~~l~v~~~~~~~v~v~~~~~~~g~~~~~--------~~~~~~~~~------------------~~~~~~~~~i~~spdG~  252 (347)
T 3hfq_A          199 QYAFLAGELSSQIASLKYDTQTGAFTQL--------GIVKTIPAD------------------YTAHNGAAAIRLSHDGH  252 (347)
T ss_dssp             SEEEEEETTTTEEEEEEEETTTTEEEEE--------EEEESSCTT------------------CCSCCEEEEEEECTTSC
T ss_pred             CEEEEEeCCCCEEEEEEecCCCCceEEe--------eeeeecCCC------------------CCCCCcceeEEECCCCC
Confidence            966664 5678999999874  332111        011111100                  01124578899999999


Q ss_pred             EEE-EEeCCCeEEEEeCCC-C--ceeeeecccCCCeeEeeecCCc-eEEEeeC-CCcEEEeec--CCCCc
Q psy12697        494 YIL-SAGVDKTTIIWDAAS-G--QCEQQFSFHSAPALDVDWQSNT-SFASCST-DQHIHVCKL--HSDKP  555 (602)
Q Consensus       494 ~l~-s~~~dg~i~iwd~~~-~--~~~~~~~~~~~~v~~~~~s~~~-~l~~~~~-d~~i~iw~~--~~~~~  555 (602)
                      +|+ +...++.|.+||+.. +  +.+..+..+...+..++|+||| +|++++. ++.|.+|++  .+++.
T Consensus       253 ~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~~tg~l  322 (347)
T 3hfq_A          253 FLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARDLTSGKL  322 (347)
T ss_dssp             EEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEECTTTCCE
T ss_pred             EEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEeCCCCeE
Confidence            874 556689999999973 2  4555666666678999999999 7777765 489999954  44543

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.87  E-value=2.9e-21  Score=190.39  Aligned_cols=207  Identities=15%  Similarity=0.183  Sum_probs=150.5

Q ss_pred             CceeEEeeCCCCCeEEEEeCCCeEEEEcCCC-----------ccee-----ecccccCCeEEEEEccCCCEEE----EEe
Q psy12697        281 KDVTSLDWNNNGSFLATGSYDGYARIWTSDG-----------SLKS-----TLGQHKGPIFALKWNKRGNYIL----SAG  340 (602)
Q Consensus       281 ~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~-----------~~~~-----~~~~~~~~i~~~~~~~~~~~l~----~~~  340 (602)
                      ..++.+++++++.++++++.++ +++|+...           ....     ....+...|.+++|+|++++|+    +++
T Consensus        37 ~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~sgs  115 (434)
T 2oit_A           37 ERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMSSE  115 (434)
T ss_dssp             SCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEETT
T ss_pred             CCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEeccC
Confidence            4578999999999999999888 88876321           0011     1123556799999999999999    778


Q ss_pred             cCCcEEEEeCCCCceeEEeeeccCCeeeeeccCCCeEEEeeCCCeEEEEEcCCCceeeEeccCCCCeEEEEECCC-CCEE
Q psy12697        341 VDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQ-GLLL  419 (602)
Q Consensus       341 ~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l  419 (602)
                      .|+.|++||+.++...     .....                         +....+..+.+|...|.+++|+|+ +.+|
T Consensus       116 ~d~~v~iwd~~~~~~~-----~~~~~-------------------------~~~~~~~~~~~h~~~V~~v~~~p~~~~~l  165 (434)
T 2oit_A          116 YGSIIAFFDVRTFSNE-----AKQQK-------------------------RPFAYHKLLKDAGGMVIDMKWNPTVPSMV  165 (434)
T ss_dssp             TEEEEEEEEHHHHHCT-----TCSSC-------------------------CCSEEEECCCSGGGSEEEEEECSSCTTEE
T ss_pred             CCceEEEEEccccccC-----CcCCc-------------------------ceeeeeeccCCCCCceEEEEECCCCCCEE
Confidence            8999999998653100     00000                         000113445678899999999997 8999


Q ss_pred             EEEECCCeEEEEeCCCCeeeEeeccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEe
Q psy12697        420 ASCSDDMTLKIWSLDKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAG  499 (602)
Q Consensus       420 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~  499 (602)
                      ++++.||+|++||++++..+.....                                  |...|.+++|+|+|++|++|+
T Consensus       166 as~s~Dg~v~iwD~~~~~~~~~~~~----------------------------------~~~~v~~v~wspdg~~lasgs  211 (434)
T 2oit_A          166 AVCLADGSIAVLQVTETVKVCATLP----------------------------------STVAVTSVCWSPKGKQLAVGK  211 (434)
T ss_dssp             EEEETTSCEEEEEESSSEEEEEEEC----------------------------------GGGCEEEEEECTTSSCEEEEE
T ss_pred             EEEECCCeEEEEEcCCCcceeeccC----------------------------------CCCceeEEEEcCCCCEEEEEc
Confidence            9999999999999998755433332                                  556677788888999999999


Q ss_pred             CCCeEEEEeCCCCceeeeeccc-------CCCeeEeeecCCc-eEE-EeeCCC------cEEEeecCCC
Q psy12697        500 VDKTTIIWDAASGQCEQQFSFH-------SAPALDVDWQSNT-SFA-SCSTDQ------HIHVCKLHSD  553 (602)
Q Consensus       500 ~dg~i~iwd~~~~~~~~~~~~~-------~~~v~~~~~s~~~-~l~-~~~~d~------~i~iw~~~~~  553 (602)
                      .||.|++||++ ++....+..|       ...|.+++|++++ +++ +...||      .+++|++...
T Consensus       212 ~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~  279 (434)
T 2oit_A          212 QNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPKK  279 (434)
T ss_dssp             TTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred             CCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEeccC
Confidence            99999999998 6655555443       2379999999998 443 344443      3899999865

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.87  E-value=5.6e-19  Score=171.09  Aligned_cols=293  Identities=9%  Similarity=0.009  Sum_probs=188.3

Q ss_pred             CEEEEee----CCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEeeCCCCCeEEEEeCC----CeEEE
Q psy12697        235 DFLASGS----GDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFLATGSYD----GYARI  306 (602)
Q Consensus       235 ~~l~s~~----~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d----g~i~i  306 (602)
                      .+++.|+    .++.|.+|+++.....    .......          +...+..++|+|+|++|++++.+    +.|.+
T Consensus        14 ~~~~vg~y~~~~~~~i~~~~~d~~~g~----~~~~~~~----------~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~   79 (361)
T 3scy_A           14 LTMLVGTYTSGNSKGIYTFRFNEETGE----SLPLSDA----------EVANPSYLIPSADGKFVYSVNEFSKDQAAVSA   79 (361)
T ss_dssp             EEEEEEECCSSSCCEEEEEEEETTTCC----EEEEEEE----------ECSCCCSEEECTTSSEEEEEECCSSTTCEEEE
T ss_pred             eEEEEEeccCCCCCCEEEEEEeCCCCC----EEEeecc----------cCCCCceEEECCCCCEEEEEEccCCCCCcEEE
Confidence            3455553    4678999987543221    1111100          14567889999999999998886    79999


Q ss_pred             EcCCC---cc--eeecccccCCeEEEEEccCCCEEEEEe-cCCcEEEEeCCCCceeEEe----ee----------ccCCe
Q psy12697        307 WTSDG---SL--KSTLGQHKGPIFALKWNKRGNYILSAG-VDKTTIIWDAASGQCEQQF----SF----------HSAPA  366 (602)
Q Consensus       307 ~~~~~---~~--~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~~wd~~~~~~~~~~----~~----------~~~~~  366 (602)
                      |+++.   ..  +.....+......+++  ++++|++++ .++.+.+|++.....+...    ..          ....+
T Consensus        80 ~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~  157 (361)
T 3scy_A           80 FAFDKEKGTLHLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHL  157 (361)
T ss_dssp             EEEETTTTEEEEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCE
T ss_pred             EEEeCCCCcEEEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcc
Confidence            98653   22  2223334556777887  788887776 5789999999754332211    11          11234


Q ss_pred             eeeeccCCCe-EEEee-CCCeEEEEEcCCCce------e-------eEeccCCCCeEEEEECCCCCEEEEEE-CCCeEEE
Q psy12697        367 LDVDWQSNTS-FASCS-TDQHIHVCKLHSDKP------V-------KSFEGHTNEVNAIKWDPQGLLLASCS-DDMTLKI  430 (602)
Q Consensus       367 ~~~~~~~~~~-~~~~~-~~~~i~i~d~~~~~~------~-------~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i  430 (602)
                      .+++|+|++. ++++. .++.|.+|++.....      +       .....+...+..++|+|+|+++++++ .++.|.+
T Consensus       158 ~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v  237 (361)
T 3scy_A          158 HCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIA  237 (361)
T ss_dssp             EEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEE
T ss_pred             eEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEE
Confidence            6789999975 44444 578999999875431      1       11223455688999999999888877 5899999


Q ss_pred             EeCCCCeeeEeeccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCC--CeEEEEe
Q psy12697        431 WSLDKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVD--KTTIIWD  508 (602)
Q Consensus       431 wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d--g~i~iwd  508 (602)
                      |++.+++.....        .+.                     ....+......++|+|||++|+++..+  +.|.+|+
T Consensus       238 ~~~~~g~~~~~~--------~~~---------------------~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~  288 (361)
T 3scy_A          238 FRYADGMLDEIQ--------TVA---------------------ADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFK  288 (361)
T ss_dssp             EEEETTEEEEEE--------EEE---------------------SCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEE
T ss_pred             EEecCCceEEeE--------EEe---------------------cCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEE
Confidence            999866432111        011                     011123445789999999998776654  8999999


Q ss_pred             CC--CCc--eeeeecccCCCeeEeeecCCc-eEEEee-CCCcEEEeecC--CCCceeeeecccccceEEEEecCCcEEEE
Q psy12697        509 AA--SGQ--CEQQFSFHSAPALDVDWQSNT-SFASCS-TDQHIHVCKLH--SDKPVKSFEGHTTGQLVHSYKGTGGIFEV  580 (602)
Q Consensus       509 ~~--~~~--~~~~~~~~~~~v~~~~~s~~~-~l~~~~-~d~~i~iw~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~~l  580 (602)
                      +.  +++  .+..+.. ...+..++|+||| +|++++ .++.|.+|+++  +++........          ....+.++
T Consensus       289 ~~~~~g~~~~~~~~~~-g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~----------~~~~p~~v  357 (361)
T 3scy_A          289 VDETNGTLTKVGYQLT-GIHPRNFIITPNGKYLLVACRDTNVIQIFERDQATGLLTDIKKDI----------KVDKPVCL  357 (361)
T ss_dssp             ECTTTCCEEEEEEEEC-SSCCCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCEEECSCCE----------ECSSEEEE
T ss_pred             EcCCCCcEEEeeEecC-CCCCceEEECCCCCEEEEEECCCCCEEEEEEECCCCcEeecceee----------eCCCCeEE
Confidence            85  455  3444444 4568899999999 777776 67899996554  44433221111          12457788


Q ss_pred             EEC
Q psy12697        581 CWN  583 (602)
Q Consensus       581 ~~s  583 (602)
                      .|.
T Consensus       358 ~~~  360 (361)
T 3scy_A          358 KFV  360 (361)
T ss_dssp             EEE
T ss_pred             EEc
Confidence            875

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.87  E-value=5e-20  Score=181.62  Aligned_cols=264  Identities=14%  Similarity=0.130  Sum_probs=172.8

Q ss_pred             cCCceEEEEECCCCCeEEEeeCCceEEEEecCCceeEEEeeccCceEEEEeCCCCCCCCCCCCccccccccccCCcceEe
Q psy12697        139 HTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKGTGGIFEVCWNSRGTPPNPPESMEVDASIEIPQSKATKL  218 (602)
Q Consensus       139 h~~~V~~~~~s~d~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  218 (602)
                      +...++.+++++++.++++++.|+ ++||+..........  .                       ..............
T Consensus        35 ~~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~--~-----------------------~~~~~~~~~~~~~~   88 (434)
T 2oit_A           35 PKERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKP--G-----------------------DDPNKIVDKVQGLL   88 (434)
T ss_dssp             CCSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCT--T-----------------------CCTTCEEECCCCEE
T ss_pred             CCCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhccc--c-----------------------cCcccccccCcccc
Confidence            345688999999999999999988 899886432110000  0                       00000000001122


Q ss_pred             eCCCcceEEEEEcCCCCEEE----EeeCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEeeCCC-CC
Q psy12697        219 IGHESEVFICAWNPVKDFLA----SGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNN-GS  293 (602)
Q Consensus       219 ~~h~~~v~~~~~~~~~~~l~----s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~  293 (602)
                      ..+...|.+++|+|++++|+    +++.|+.|++||+.+...............     .....|...|.+++|+|+ +.
T Consensus        89 ~~~~~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~-----~~~~~h~~~V~~v~~~p~~~~  163 (434)
T 2oit_A           89 VPMKFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYH-----KLLKDAGGMVIDMKWNPTVPS  163 (434)
T ss_dssp             ECCSSCEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEE-----ECCCSGGGSEEEEEECSSCTT
T ss_pred             ccCCCcccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeee-----eccCCCCCceEEEEECCCCCC
Confidence            34678899999999999999    788999999999875411000000000000     011235678999999997 88


Q ss_pred             eEEEEeCCCeEEEEcCCCc-ceeecccccCCeEEEEEccCCCEEEEEecCCcEEEEeCCCCceeEEeeecc-------CC
Q psy12697        294 FLATGSYDGYARIWTSDGS-LKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHS-------AP  365 (602)
Q Consensus       294 ~l~~~~~dg~i~i~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~-------~~  365 (602)
                      +|++++.||.|++||++.. .......|...|.+++|+|+|++|++++.||.|++||++ ++....+..+.       ..
T Consensus       164 ~las~s~Dg~v~iwD~~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~  242 (434)
T 2oit_A          164 MVAVCLADGSIAVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVR  242 (434)
T ss_dssp             EEEEEETTSCEEEEEESSSEEEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEE
T ss_pred             EEEEEECCCeEEEEEcCCCcceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCcee
Confidence            9999999999999998743 334455688999999999999999999999999999998 55555554332       27


Q ss_pred             eeeeeccCCCeEEEee--CCC------eEEEEEcCCCce-----eeEec-------cCCCCeEEEEECCCCCEEEEEEC-
Q psy12697        366 ALDVDWQSNTSFASCS--TDQ------HIHVCKLHSDKP-----VKSFE-------GHTNEVNAIKWDPQGLLLASCSD-  424 (602)
Q Consensus       366 ~~~~~~~~~~~~~~~~--~~~------~i~i~d~~~~~~-----~~~~~-------~~~~~i~~~~~~~~~~~l~~~~~-  424 (602)
                      +.++.|+++..++++.  .+|      .+++|++...+.     ...+.       +....-..+.+-++.+++++++. 
T Consensus       243 v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~dw~l~~v~s~~  322 (434)
T 2oit_A          243 VLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPKKEEKHPEIFVNFMEPCYGSCTERQHHYYLSYIEEWDLVLAASAA  322 (434)
T ss_dssp             EEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCCTTTCCCCEEEECCCSSCCCCSSSCCCEEEEEEGGGTEEEEEETT
T ss_pred             EEEEEEecCceEEEEEccCCCccCCCCceEEEEeccCCCCCCcceEecccCCCCCCCCcCcceeeehhccCCEEEEecCC
Confidence            8899999998877443  232      389999976521     11111       11222223334466677666654 


Q ss_pred             CCeEEEEeCC
Q psy12697        425 DMTLKIWSLD  434 (602)
Q Consensus       425 dg~i~iwd~~  434 (602)
                      .+.|.+....
T Consensus       323 s~dv~vl~~~  332 (434)
T 2oit_A          323 STEVSILARQ  332 (434)
T ss_dssp             CSBCEEEEEC
T ss_pred             CCceeEEEec
Confidence            4456666643

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.86  E-value=8.9e-20  Score=193.71  Aligned_cols=351  Identities=13%  Similarity=0.134  Sum_probs=221.6

Q ss_pred             ccceeeeecccceeeeeeeccCCce-----EEEEECCCCCeEEEeeCC---------ceEEEEecCCceeEEEeeccCce
Q psy12697        119 RLTLPLWDVERGECLNTLTRHTEPV-----YSVAFSPDGKFLASGSFD---------KCVHIWSARTGQLVHSYKGTGGI  184 (602)
Q Consensus       119 ~~~i~vwd~~~~~~~~~l~~h~~~V-----~~~~~s~d~~~l~s~~~d---------~~v~iwd~~~~~~~~~~~~~~~~  184 (602)
                      +++|++||+.++++...+.+|....     ..++|||||++|+.++.+         +.+.+||+.+++..         
T Consensus        35 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~---------  105 (740)
T 4a5s_A           35 ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLI---------  105 (740)
T ss_dssp             TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEEC---------
T ss_pred             CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEE---------
Confidence            5789999999999988888887532     347889999999999876         56679999998753         


Q ss_pred             EEEEeCCCCCCCCCCCCccccccccccCCcceEeeCCCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCccceE
Q psy12697        185 FEVCWNSRGTPPNPPESMEVDASIEIPQSKATKLIGHESEVFICAWNPVKDFLASGSGDSTARIWDMTDSTKKDPKELQI  264 (602)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~  264 (602)
                                                      .+..|...+...+|||||+.||.+. ++.|.+|++.++......... 
T Consensus       106 --------------------------------~l~~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~~lt~~g-  151 (740)
T 4a5s_A          106 --------------------------------TEERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTG-  151 (740)
T ss_dssp             --------------------------------CSSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCC-
T ss_pred             --------------------------------EcccCCCcceeeEECCCCCEEEEEE-CCeEEEEECCCCceEEEcCCC-
Confidence                                            2345677899999999999999884 689999999876532110000 


Q ss_pred             EEEEEecCCCcccCCC---------CceeEEeeCCCCCeEEEEeCCC-eEEEEcCCCcceeecccccCCeEEEEEccCCC
Q psy12697        265 VLRHCISKGGTEVPSN---------KDVTSLDWNNNGSFLATGSYDG-YARIWTSDGSLKSTLGQHKGPIFALKWNKRGN  334 (602)
Q Consensus       265 ~~~~~~~~~~~~~~~~---------~~i~~~~~~~~~~~l~~~~~dg-~i~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~  334 (602)
                            ........+.         .....+.|||||+.||.+..|. .+.+|++......  ..+...+..+.+.+.|.
T Consensus       152 ------~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~--~~~~~~~~~~~yp~~G~  223 (740)
T 4a5s_A          152 ------KEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDE--SLQYPKTVRVPYPKAGA  223 (740)
T ss_dssp             ------BTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCST--TCSSCEEEEEECCBTTS
T ss_pred             ------CccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCC--CCCCCcceeecCCCCcC
Confidence                  0000000000         2234689999999999887654 4777764310000  02445567788877765


Q ss_pred             EEEEEecCCcEEEEeCCC---Cc--eeEEeee------ccCCeeeeeccCCCeEEE-eeC----CCeEEEEEcCCCc---
Q psy12697        335 YILSAGVDKTTIIWDAAS---GQ--CEQQFSF------HSAPALDVDWQSNTSFAS-CST----DQHIHVCKLHSDK---  395 (602)
Q Consensus       335 ~l~~~~~dg~i~~wd~~~---~~--~~~~~~~------~~~~~~~~~~~~~~~~~~-~~~----~~~i~i~d~~~~~---  395 (602)
                      .    .....|.+||+.+   ++  ....+..      +...+..+.|+|++.+++ ...    +..|.+||+.+++   
T Consensus       224 ~----~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~  299 (740)
T 4a5s_A          224 V----NPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRW  299 (740)
T ss_dssp             C----CCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEE
T ss_pred             c----CCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCcccc
Confidence            3    1223689999998   73  2223332      556688899999988433 322    2379999999887   


Q ss_pred             -e--eeEe--ccCCCCeE-----EEEECCCCCEEE-EEEC-C--CeEEEEeCCCCeeeEeeccccccEEEEEECCCCCCC
Q psy12697        396 -P--VKSF--EGHTNEVN-----AIKWDPQGLLLA-SCSD-D--MTLKIWSLDKDNCVHDLQAHNKEIYTIKWSPTGPET  461 (602)
Q Consensus       396 -~--~~~~--~~~~~~i~-----~~~~~~~~~~l~-~~~~-d--g~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  461 (602)
                       +  +..+  .+|...+.     ...|+|||+.|+ ..+. +  ..|.+||+.+++.. .+......+            
T Consensus       300 ~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~~-~lT~g~~~v------------  366 (740)
T 4a5s_A          300 NCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCT-FITKGTWEV------------  366 (740)
T ss_dssp             EECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSCE-ESCCSSSCE------------
T ss_pred             ceeEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCceE-ecccCCEEE------------
Confidence             2  2222  44555444     788999999887 6664 3  46888888765443 222222222            


Q ss_pred             CCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCC-------CeEEEEeCCCCceeeeecc----cCCCeeEeee
Q psy12697        462 SNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVD-------KTTIIWDAASGQCEQQFSF----HSAPALDVDW  530 (602)
Q Consensus       462 ~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d-------g~i~iwd~~~~~~~~~~~~----~~~~v~~~~~  530 (602)
                                            ..+. .+|++.|+..+..       ..|+..++..+.....+..    .......+.|
T Consensus       367 ----------------------~~~~-~~d~~~i~f~~~~~~~~~~~~~ly~v~~~g~~~~~~lt~~~~~~~~~~~~~~~  423 (740)
T 4a5s_A          367 ----------------------IGIE-ALTSDYLYYISNEYKGMPGGRNLYKIQLIDYTKVTCLSCELNPERCQYYSVSF  423 (740)
T ss_dssp             ----------------------EEEE-EECSSEEEEEESCGGGCTTCBEEEEEETTEEEEEEESSTTTSTTTBCBEEEEE
T ss_pred             ----------------------EEEE-EEeCCEEEEEEecCCCCCceeEEEEEECCCCCcceeeccccCCCCCceEEEEE
Confidence                                  2221 1234544433332       3455566665543323331    2356888999


Q ss_pred             cCCc-eEEEee-C--CCcEEEeecCCCCceeeee
Q psy12697        531 QSNT-SFASCS-T--DQHIHVCKLHSDKPVKSFE  560 (602)
Q Consensus       531 s~~~-~l~~~~-~--d~~i~iw~~~~~~~~~~~~  560 (602)
                      ||++ .++... .  -..+.+++..+++.+..+.
T Consensus       424 S~dg~~~~~~~s~~~~p~~~l~~~~~~~~~~~l~  457 (740)
T 4a5s_A          424 SKEAKYYQLRCSGPGLPLYTLHSSVNDKGLRVLE  457 (740)
T ss_dssp             CTTSSEEEEEECSBSSCEEEEEETTTTEEEEEEE
T ss_pred             CCCCCEEEEEeCCCCCCEEEEEECCCCcEEEEec
Confidence            9999 544332 2  2468888888776655543

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.85  E-value=6.1e-19  Score=169.67  Aligned_cols=283  Identities=12%  Similarity=0.110  Sum_probs=198.7

Q ss_pred             ccceeeeecccceeeeeeeccCCceEEEEECCCCCeEEEee----------CCceEEEEecCCceeEEEeeccCceEEEE
Q psy12697        119 RLTLPLWDVERGECLNTLTRHTEPVYSVAFSPDGKFLASGS----------FDKCVHIWSARTGQLVHSYKGTGGIFEVC  188 (602)
Q Consensus       119 ~~~i~vwd~~~~~~~~~l~~h~~~V~~~~~s~d~~~l~s~~----------~d~~v~iwd~~~~~~~~~~~~~~~~~~~~  188 (602)
                      ++.|.+||..+++.+.++..+..+  .++|+|||++|++++          .+++|.+||..+++.+..+.....     
T Consensus        30 d~~v~v~D~~t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~-----  102 (361)
T 2oiz_A           30 ESRVHVYDYTNGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPK-----  102 (361)
T ss_dssp             GCEEEEEETTTCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTT-----
T ss_pred             cCeEEEEECCCCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCcc-----
Confidence            568999999999999999887776  899999999999886          367899999999988876542110     


Q ss_pred             eCCCCCCCCCCCCccccccccccCCcceEeeCCCcceEEEEEcCCCCEEEEeeC--CCcEEEEeCCCCCCCCCccceEEE
Q psy12697        189 WNSRGTPPNPPESMEVDASIEIPQSKATKLIGHESEVFICAWNPVKDFLASGSG--DSTARIWDMTDSTKKDPKELQIVL  266 (602)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~--dg~i~iw~~~~~~~~~~~~~~~~~  266 (602)
                                                   ...+......++|+|++++|+++..  ++.|.+||+.+++....       
T Consensus       103 -----------------------------~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~-------  146 (361)
T 2oiz_A          103 -----------------------------RVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVED-------  146 (361)
T ss_dssp             -----------------------------BCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEE-------
T ss_pred             -----------------------------ccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEE-------
Confidence                                         0012234567899999999998864  68999999987643211       


Q ss_pred             EEEecCCCcccCCCCceeEEeeCCCC-CeEEEEeCCCeEEEEcCC--Ccce------eecccccCCeEEEEEccCCCEEE
Q psy12697        267 RHCISKGGTEVPSNKDVTSLDWNNNG-SFLATGSYDGYARIWTSD--GSLK------STLGQHKGPIFALKWNKRGNYIL  337 (602)
Q Consensus       267 ~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~i~~~~--~~~~------~~~~~~~~~i~~~~~~~~~~~l~  337 (602)
                        .+       +. .....+.+.|++ ..+++.+.||.+.+|+..  ++..      ..+.....++ .+.+++++..++
T Consensus       147 --~i-------~~-~~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~  215 (361)
T 2oiz_A          147 --VT-------AA-AGCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPI-FIAPALDKDKAH  215 (361)
T ss_dssp             --EG-------GG-TTEEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCB-CSCCEECSSEEE
T ss_pred             --Ee-------cC-CCcceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCce-EEEecccCCEEE
Confidence              00       00 112224566655 567788888988888764  3322      1122222222 334467788888


Q ss_pred             EEecCCcEEEEeCCCCcee--EEeeecc----------CCeeeeeccCC-CeEEEeeC-----------CCeEEEEEcCC
Q psy12697        338 SAGVDKTTIIWDAASGQCE--QQFSFHS----------APALDVDWQSN-TSFASCST-----------DQHIHVCKLHS  393 (602)
Q Consensus       338 ~~~~dg~i~~wd~~~~~~~--~~~~~~~----------~~~~~~~~~~~-~~~~~~~~-----------~~~i~i~d~~~  393 (602)
                      ..+.++.+.++|+......  ..+....          .....++++++ +.++++..           .+.|.+||+.+
T Consensus       216 ~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t  295 (361)
T 2oiz_A          216 FVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKT  295 (361)
T ss_dssp             EEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTT
T ss_pred             EEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCC
Confidence            8888999999998755422  2221110          11122567776 44444432           35899999999


Q ss_pred             CceeeEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCC--eeeEeeccccccEEEEEECCCC
Q psy12697        394 DKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKD--NCVHDLQAHNKEIYTIKWSPTG  458 (602)
Q Consensus       394 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~--~~~~~~~~~~~~i~~~~~~~~~  458 (602)
                      ++.+..+..+.  +.+++|+|+|++|++++. +.|.+||..++  +.+.++.........+.++|++
T Consensus       296 ~~~v~~i~~~~--p~~ia~spdg~~l~v~n~-~~v~v~D~~t~~l~~~~~i~~~G~~P~~~~~~p~G  359 (361)
T 2oiz_A          296 KQRVARIPGRD--ALSMTIDQQRNLMLTLDG-GNVNVYDISQPEPKLLRTIEGAAEASLQVQFHPVG  359 (361)
T ss_dssp             TEEEEEEECTT--CCEEEEETTTTEEEEECS-SCEEEEECSSSSCEEEEEETTSCSSEEEEEECCCS
T ss_pred             CcEEEEEecCC--eeEEEECCCCCEEEEeCC-CeEEEEECCCCcceeeEEeccCCCCcEEEEecCCC
Confidence            99999998877  999999999999998887 99999999999  8888876666666777777765

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.85  E-value=2.9e-20  Score=182.82  Aligned_cols=311  Identities=14%  Similarity=0.121  Sum_probs=206.0

Q ss_pred             eeeecccceeeeeeeccCCc-----eEEEEECCCCCeEEEeeCC---ceEEEEecCCceeEEEeeccCceEEEEeCCCCC
Q psy12697        123 PLWDVERGECLNTLTRHTEP-----VYSVAFSPDGKFLASGSFD---KCVHIWSARTGQLVHSYKGTGGIFEVCWNSRGT  194 (602)
Q Consensus       123 ~vwd~~~~~~~~~l~~h~~~-----V~~~~~s~d~~~l~s~~~d---~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (602)
                      ..+|..+++.+..+..+...     +.+++|||||++|+....+   ..|.+||+.+++......               
T Consensus        13 ~~~d~~~g~~~~~l~~~~~~~~~~~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~---------------   77 (396)
T 3c5m_A           13 TFVDSDTQVKVTRLTPTDIICHRNYFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTE---------------   77 (396)
T ss_dssp             EEECTTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCC---------------
T ss_pred             eeecCCCCcceEEEecCCCCccceeeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeec---------------
Confidence            45588899888888776544     7889999999998877543   478888998877542111               


Q ss_pred             CCCCCCCccccccccccCCcceEeeCCCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCccceEEEEEEecCCC
Q psy12697        195 PPNPPESMEVDASIEIPQSKATKLIGHESEVFICAWNPVKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGG  274 (602)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~  274 (602)
                                               ++......+.|+|+++.|+.++.++.|.+|++.+++..      .....      
T Consensus        78 -------------------------~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~------~~~~~------  120 (396)
T 3c5m_A           78 -------------------------GKGDNTFGGFISTDERAFFYVKNELNLMKVDLETLEEQ------VIYTV------  120 (396)
T ss_dssp             -------------------------SSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCCEE------EEEEC------
T ss_pred             -------------------------CCCCccccceECCCCCEEEEEEcCCcEEEEECCCCCcE------EEEec------
Confidence                                     11112223689999999999999999999998776421      01000      


Q ss_pred             cccCCCCceeEEeeCCCCCeEEEEeCCCeEEEEcCCCcceeecccccCCeEEEEEccCCCEEEEE-----ecCCcEEEEe
Q psy12697        275 TEVPSNKDVTSLDWNNNGSFLATGSYDGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSA-----GVDKTTIIWD  349 (602)
Q Consensus       275 ~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-----~~dg~i~~wd  349 (602)
                           ..     .|+++|+.|+....++...+|.                ..+.|+|+++.++..     ..+..|.+||
T Consensus       121 -----~~-----~~~~~g~~l~~~~~~~~~~~~~----------------~~~~~spdg~~~~~~~~~~~~~~~~l~~~d  174 (396)
T 3c5m_A          121 -----DE-----EWKGYGTWVANSDCTKLVGIEI----------------LKRDWQPLTSWEKFAEFYHTNPTCRLIKVD  174 (396)
T ss_dssp             -----CT-----TEEEEEEEEECTTSSEEEEEEE----------------EGGGCCCCCSHHHHHHHHHTCCCEEEEEEE
T ss_pred             -----cc-----ccCCCCCEEEeccCCccccccc----------------cccccCCCCcceeeeeeccCCCcceEEEEE
Confidence                 01     1666777777666655544442                124578888877654     3567899999


Q ss_pred             CCCCceeEEeeeccCCeeeeeccC-CCe-EEEeeCC------CeEEEEEcCCCceeeEeccC-CCCeEEEEECCCCCEEE
Q psy12697        350 AASGQCEQQFSFHSAPALDVDWQS-NTS-FASCSTD------QHIHVCKLHSDKPVKSFEGH-TNEVNAIKWDPQGLLLA  420 (602)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~------~~i~i~d~~~~~~~~~~~~~-~~~i~~~~~~~~~~~l~  420 (602)
                      +.+++..... .+...+..+.|+| ++. ++..+.+      ..|.+||+..++........ ...+..++|+|+|++|+
T Consensus       175 ~~~g~~~~~~-~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~  253 (396)
T 3c5m_A          175 IETGELEVIH-QDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCTHEFWIPDGSAMA  253 (396)
T ss_dssp             TTTCCEEEEE-EESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEEEEEEECTTSSCEE
T ss_pred             CCCCcEEeec-cCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCccccceEECCCCCEEE
Confidence            9988765444 4566788899999 544 5555443      46889998766543322211 23578899999999888


Q ss_pred             EEECC-----CeEEEEeCCCCeeeEeeccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEcc-CCCE
Q psy12697        421 SCSDD-----MTLKIWSLDKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNK-RGNY  494 (602)
Q Consensus       421 ~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~-~~~~  494 (602)
                      .++.+     +.|++||+.+++........                                    ... +.|+| ||++
T Consensus       254 ~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~------------------------------------~~~-~~~s~~dg~~  296 (396)
T 3c5m_A          254 YVSYFKGQTDRVIYKANPETLENEEVMVMP------------------------------------PCS-HLMSNFDGSL  296 (396)
T ss_dssp             EEEEETTTCCEEEEEECTTTCCEEEEEECC------------------------------------SEE-EEEECSSSSE
T ss_pred             EEecCCCCccceEEEEECCCCCeEEeeeCC------------------------------------CCC-CCccCCCCce
Confidence            77654     45999999876543211100                                    011 67888 8888


Q ss_pred             EEEEe----------------CCCeEEEEeCCCCceeeeecccCC-----------CeeEeeecCCc-eEEEeeC-CCcE
Q psy12697        495 ILSAG----------------VDKTTIIWDAASGQCEQQFSFHSA-----------PALDVDWQSNT-SFASCST-DQHI  545 (602)
Q Consensus       495 l~s~~----------------~dg~i~iwd~~~~~~~~~~~~~~~-----------~v~~~~~s~~~-~l~~~~~-d~~i  545 (602)
                      +++++                .++.|++||+.+++.. .+..+..           .+..++|+||| .|+.++. ++..
T Consensus       297 l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~  375 (396)
T 3c5m_A          297 MVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQ-KLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVP  375 (396)
T ss_dssp             EEEEECCC----------CCCCCCEEEEEETTTTBCC-EEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSC
T ss_pred             EEEecCCcceeeccccccccCCCCcEEEEecccCceE-EccCCCCccccccccccCCCCCceEccCCCeEEEEecCCCCc
Confidence            88754                3478999999887754 3444443           25678999999 6766554 5555


Q ss_pred             EEeec
Q psy12697        546 HVCKL  550 (602)
Q Consensus       546 ~iw~~  550 (602)
                      .+|.+
T Consensus       376 ~l~~~  380 (396)
T 3c5m_A          376 AIYIA  380 (396)
T ss_dssp             EEEEE
T ss_pred             eEEEE
Confidence            55544

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.85  E-value=1.8e-19  Score=176.58  Aligned_cols=280  Identities=10%  Similarity=0.041  Sum_probs=180.9

Q ss_pred             EEeeCCCCCeEEEEeC-CC--eEEEEcCCCcceeec-ccccCCeEEEEEccCCCEEEEEecCCcEEEEeCCCCceeEEee
Q psy12697        285 SLDWNNNGSFLATGSY-DG--YARIWTSDGSLKSTL-GQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFS  360 (602)
Q Consensus       285 ~~~~~~~~~~l~~~~~-dg--~i~i~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~  360 (602)
                      ..+|+|||+.|+.++. +|  .|.+||+.+.....+ ..+...+..+.|+|+|+.|+.++.++.+.+||+.+++......
T Consensus        40 ~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~  119 (388)
T 3pe7_A           40 QKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQ  119 (388)
T ss_dssp             SCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEE
T ss_pred             CccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCcceeeee
Confidence            3789999999999887 66  488888875544444 4444455567899999999999999999999999998777666


Q ss_pred             eccCCeeeee--ccCCCeEEEe-----------------------eCCCeEEEEEcCCCceeeEeccCCCCeEEEEECC-
Q psy12697        361 FHSAPALDVD--WQSNTSFASC-----------------------STDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDP-  414 (602)
Q Consensus       361 ~~~~~~~~~~--~~~~~~~~~~-----------------------~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~-  414 (602)
                      .+...+....  +++++.++++                       ..+..|++||+.+++.. .+..+...+..++|+| 
T Consensus       120 ~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~-~l~~~~~~~~~~~~sp~  198 (388)
T 3pe7_A          120 VPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGEST-VILQENQWLGHPIYRPY  198 (388)
T ss_dssp             CCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEE-EEEEESSCEEEEEEETT
T ss_pred             chhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceE-EeecCCccccccEECCC
Confidence            5555443333  3677665542                       23478999999988654 4445667799999999 


Q ss_pred             CCCEEEEEECC------CeEEEEeCCCCeeeEeeccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEE
Q psy12697        415 QGLLLASCSDD------MTLKIWSLDKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKW  488 (602)
Q Consensus       415 ~~~~l~~~~~d------g~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~  488 (602)
                      +|+.|+..+.+      ..|.++|...+.. ..+..+..                                ...+...+|
T Consensus       199 dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~-~~l~~~~~--------------------------------~~~~~~~~~  245 (388)
T 3pe7_A          199 DDSTVAFCHEGPHDLVDARMWLINEDGTNM-RKVKTHAE--------------------------------GESCTHEFW  245 (388)
T ss_dssp             EEEEEEEEECSCTTTSSCSEEEEETTSCCC-EESCCCCT--------------------------------TEEEEEEEE
T ss_pred             CCCEEEEEEecCCCCCcceEEEEeCCCCce-EEeeeCCC--------------------------------CcccccceE
Confidence            99999888764      2677777665432 22221110                                123556778


Q ss_pred             ccCCCEEEEEeCC-----CeEEEEeCCCCceee--eecccCC---CeeEeeecCCc-eEEEe---------eCCCcEEEe
Q psy12697        489 NKRGNYILSAGVD-----KTTIIWDAASGQCEQ--QFSFHSA---PALDVDWQSNT-SFASC---------STDQHIHVC  548 (602)
Q Consensus       489 s~~~~~l~s~~~d-----g~i~iwd~~~~~~~~--~~~~~~~---~v~~~~~s~~~-~l~~~---------~~d~~i~iw  548 (602)
                      ||||+.|+..+.+     +.|++||+.+++...  .+..+..   ....+.|+||| .|+..         ..+..|++|
T Consensus       246 spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~  325 (388)
T 3pe7_A          246 VPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVF  325 (388)
T ss_dssp             CTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEE
T ss_pred             CCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEE
Confidence            8888877654432     249999999987533  3332111   12234799999 66643         456789999


Q ss_pred             ecCCCCceeeeecccccceEEEEecCCcEEEEEECCCCCeEEEecc-CCeEE
Q psy12697        549 KLHSDKPVKSFEGHTTGQLVHSYKGTGGIFEVCWNSRGDKVGASAS-DGSVF  599 (602)
Q Consensus       549 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~-dg~v~  599 (602)
                      |+.+++.. .+..+...-..........+.+++|+|||+.|+.++. +|...
T Consensus       326 d~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~  376 (388)
T 3pe7_A          326 NMKNGTQH-RVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPA  376 (388)
T ss_dssp             ETTTTEEE-EEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCE
T ss_pred             eccCCceE-EeccccCcccccccccccCCCCccCCCCCCEEEEEecCCCcee
Confidence            98876532 2222210000000000014678899999998887664 55443

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.84  E-value=1e-18  Score=183.92  Aligned_cols=329  Identities=10%  Similarity=0.022  Sum_probs=209.8

Q ss_pred             eeeeccCCceEEEEECCCCCeEEEe--eCCceEEEEecCCceeEEEeeccCceEEEEeCCCCCCCCCCCCcccccccccc
Q psy12697        134 NTLTRHTEPVYSVAFSPDGKFLASG--SFDKCVHIWSARTGQLVHSYKGTGGIFEVCWNSRGTPPNPPESMEVDASIEIP  211 (602)
Q Consensus       134 ~~l~~h~~~V~~~~~s~d~~~l~s~--~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (602)
                      ..+.+|...|..++|++++-++++.  +.++...||....+.....                                  
T Consensus        17 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~----------------------------------   62 (662)
T 3azo_A           17 ALVASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEES----------------------------------   62 (662)
T ss_dssp             HHHHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEE----------------------------------
T ss_pred             HHHhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcce----------------------------------
Confidence            3467799999999999987777777  5688999998644333322                                  


Q ss_pred             CCcceEeeCCCcceE---------EEEEc--CCCCE-EEEeeC-CCcEEEEeCC--C-CCCCCCccceEEEEEEecCCCc
Q psy12697        212 QSKATKLIGHESEVF---------ICAWN--PVKDF-LASGSG-DSTARIWDMT--D-STKKDPKELQIVLRHCISKGGT  275 (602)
Q Consensus       212 ~~~~~~l~~h~~~v~---------~~~~~--~~~~~-l~s~~~-dg~i~iw~~~--~-~~~~~~~~~~~~~~~~~~~~~~  275 (602)
                            +..|...+.         ...|+  ||++. |+.++. +..|.+|++.  . +....   +.   .      ..
T Consensus        63 ------l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~~~~---l~---~------~~  124 (662)
T 3azo_A           63 ------ALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAVPRP---LT---P------VS  124 (662)
T ss_dssp             ------SSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCCCEE---CS---C------CC
T ss_pred             ------eCCCCccccccccccCCccceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCCCEe---cc---C------Cc
Confidence                  222322222         34454  99988 766554 4556666654  2 22110   00   0      00


Q ss_pred             ccCCCCceeEEeeCCCCCeEEEEeCC----------CeEEEEcCCC------cceeecc-cccCCeEEEEEccCCCEEEE
Q psy12697        276 EVPSNKDVTSLDWNNNGSFLATGSYD----------GYARIWTSDG------SLKSTLG-QHKGPIFALKWNKRGNYILS  338 (602)
Q Consensus       276 ~~~~~~~i~~~~~~~~~~~l~~~~~d----------g~i~i~~~~~------~~~~~~~-~~~~~i~~~~~~~~~~~l~~  338 (602)
                      ...+...+..++|+|||+.|++++.+          ..|++|++.+      .....+. .+...+..++|+|||++|+.
T Consensus       125 ~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDG~~la~  204 (662)
T 3azo_A          125 AVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVRELSDDAHRFVTGPRLSPDGRQAVW  204 (662)
T ss_dssp             CSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSEESSCSCSSEECCCEECTTSSEEEE
T ss_pred             cCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCceeEEEecCCCcccCceECCCCCEEEE
Confidence            00134568899999999999998876          5899999987      6666666 66677888999999999998


Q ss_pred             EecCC--------cEEEEeCC-CC---ceeEEeeeccCCeeeeeccCCCeEE-EeeCCC--eEEEEEcCCCceeeEeccC
Q psy12697        339 AGVDK--------TTIIWDAA-SG---QCEQQFSFHSAPALDVDWQSNTSFA-SCSTDQ--HIHVCKLHSDKPVKSFEGH  403 (602)
Q Consensus       339 ~~~dg--------~i~~wd~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~i~i~d~~~~~~~~~~~~~  403 (602)
                      ++.++        .|.+||+. ++   +.......+...+..+.|+|++.++ ++..++  .|++||+.+++.......+
T Consensus       205 ~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~  284 (662)
T 3azo_A          205 LAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRRE  284 (662)
T ss_dssp             EEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCS
T ss_pred             EECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeeccccc
Confidence            87553        79999998 56   3433344456788999999987644 455566  6777777666654433333


Q ss_pred             CCC--------eEEEEECCCCCEEEEEECCCeEEEE--eCCCCeeeEeeccccccEEEEEECCCCCCCCCCCcceeeeee
Q psy12697        404 TNE--------VNAIKWDPQGLLLASCSDDMTLKIW--SLDKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILK  473 (602)
Q Consensus       404 ~~~--------i~~~~~~~~~~~l~~~~~dg~i~iw--d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~  473 (602)
                      ...        +..++|+|+++++++++. +.++||  |+.+++ +..+..+...                         
T Consensus       285 ~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~~-~~~l~~~~~~-------------------------  337 (662)
T 3azo_A          285 EEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDPESGE-LVDAAGPWTE-------------------------  337 (662)
T ss_dssp             SBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEETTTTE-EEECCSSCCE-------------------------
T ss_pred             ccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEECCCCc-EEEecCCCCe-------------------------
Confidence            222        567899999999999998 999999  555444 4444443332                         


Q ss_pred             eccCCccCCeEEE-EEccCCCEEEEEeCCC--eEEEEeCCCCceeeeecccCCCeeEeeecCCc-eEEEeeCCCcEEEee
Q psy12697        474 STLGQHKGPIFAL-KWNKRGNYILSAGVDK--TTIIWDAASGQCEQQFSFHSAPALDVDWQSNT-SFASCSTDQHIHVCK  549 (602)
Q Consensus       474 ~~~~~~~~~v~~i-~~s~~~~~l~s~~~dg--~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~-~l~~~~~d~~i~iw~  549 (602)
                               +..+ +++++.-++++++.+.  .|.+||+.+++.......+...+....+++.. ..+....+..|..|-
T Consensus       338 ---------~~~~~s~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~dg~~i~~~~  408 (662)
T 3azo_A          338 ---------WAATLTVSGTRAVGVAASPRTAYEVVELDTVTGRARTIGARHTDPVDPAYYPEPQIRTFTAPDGREIHAHI  408 (662)
T ss_dssp             ---------EEEEEEEETTEEEEEEEETTEEEEEEEEETTTCCEEEEESCCCCSSCGGGSCCCEEEEEECTTSCEEEEEE
T ss_pred             ---------EEEEEecCCCEEEEEEcCCCCCCEEEEEECCCCceEEeecCCcccCCccccCcceEEEEEcCCCCEEEEEE
Confidence                     3333 2222222344455554  56666777877655445554455555565555 334433344666554


Q ss_pred             c
Q psy12697        550 L  550 (602)
Q Consensus       550 ~  550 (602)
                      .
T Consensus       409 ~  409 (662)
T 3azo_A          409 Y  409 (662)
T ss_dssp             E
T ss_pred             E
Confidence            3

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.84  E-value=7.2e-18  Score=162.20  Aligned_cols=292  Identities=8%  Similarity=0.062  Sum_probs=196.1

Q ss_pred             CCCeEEEee------CCceEEEEecCCceeEEEeeccCceEEEEeCCCCCCCCCCCCccccccccccCCcceEeeCCCcc
Q psy12697        151 DGKFLASGS------FDKCVHIWSARTGQLVHSYKGTGGIFEVCWNSRGTPPNPPESMEVDASIEIPQSKATKLIGHESE  224 (602)
Q Consensus       151 d~~~l~s~~------~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~  224 (602)
                      +++++....      .|+.|.+||..+++.+..++                                        .+..+
T Consensus        14 ~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~i~----------------------------------------~g~~p   53 (361)
T 2oiz_A           14 QENRIYVMDSVFMHLTESRVHVYDYTNGKFLGMVP----------------------------------------TAFNG   53 (361)
T ss_dssp             GGGEEEEEECCGGGGGGCEEEEEETTTCCEEEEEE----------------------------------------CCEEE
T ss_pred             CCCEEEEECCCCCccccCeEEEEECCCCeEEEEec----------------------------------------CCCCC
Confidence            555555543      47899999999998775443                                        23334


Q ss_pred             eEEEEEcCCCCEEEEee----------CCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEeeCCCCCe
Q psy12697        225 VFICAWNPVKDFLASGS----------GDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSF  294 (602)
Q Consensus       225 v~~~~~~~~~~~l~s~~----------~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  294 (602)
                        .++|+|+++++++++          .++.|.+||..+.+......        ...  ....+......++++|+|++
T Consensus        54 --~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~--------~~~--~~~~~g~~p~~i~~spdg~~  121 (361)
T 2oiz_A           54 --HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEIS--------LPP--KRVQGLNYDGLFRQTTDGKF  121 (361)
T ss_dssp             --EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEE--------ECT--TBCCBCCCGGGEEECTTSSE
T ss_pred             --ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEE--------cCc--cccccCCCcceEEECCCCCE
Confidence              789999999999886          36789999987654321110        000  00111245678999999999


Q ss_pred             EEEEeC--CCeEEEEcCCCc-ceee-cccccCCeEEEEEccCC-CEEEEEecCCcEEEEeCCC-CceeEEe------eec
Q psy12697        295 LATGSY--DGYARIWTSDGS-LKST-LGQHKGPIFALKWNKRG-NYILSAGVDKTTIIWDAAS-GQCEQQF------SFH  362 (602)
Q Consensus       295 l~~~~~--dg~i~i~~~~~~-~~~~-~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~~wd~~~-~~~~~~~------~~~  362 (602)
                      |+++..  ++.|.+||.... .... +. .. ....+.+.|++ ..+++.+.||.+.+|+... ++.....      ...
T Consensus       122 l~v~n~~~~~~v~v~d~~~~~~~~~~i~-~~-~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~  199 (361)
T 2oiz_A          122 IVLQNASPATSIGIVDVAKGDYVEDVTA-AA-GCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVK  199 (361)
T ss_dssp             EEEEEESSSEEEEEEETTTTEEEEEEGG-GT-TEEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTT
T ss_pred             EEEECCCCCCeEEEEECCCCcEEEEEec-CC-CcceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCC
Confidence            998874  579999998744 3333 32 22 22335567765 6778888999999998865 5544221      111


Q ss_pred             cCCeeeeeccCC-CeEEEeeCCCeEEEEEcCCCcee--eEecc------CC----CCeEEEEECCCCCEEEEEEC-----
Q psy12697        363 SAPALDVDWQSN-TSFASCSTDQHIHVCKLHSDKPV--KSFEG------HT----NEVNAIKWDPQGLLLASCSD-----  424 (602)
Q Consensus       363 ~~~~~~~~~~~~-~~~~~~~~~~~i~i~d~~~~~~~--~~~~~------~~----~~i~~~~~~~~~~~l~~~~~-----  424 (602)
                      ..++ .+...++ ..++..+.++.+.++|+......  ..+..      +.    .....++|+|+++.++++..     
T Consensus       200 ~~~~-~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~  278 (361)
T 2oiz_A          200 DDPI-FIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKE  278 (361)
T ss_dssp             TSCB-CSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCT
T ss_pred             CCce-EEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCc
Confidence            1121 2222333 35666677899999998765421  11110      01    11123789999888877653     


Q ss_pred             ------CCeEEEEeCCCCeeeEeeccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEE
Q psy12697        425 ------DMTLKIWSLDKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSA  498 (602)
Q Consensus       425 ------dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~  498 (602)
                            .+.|.+||+.+++.+.++..+.                                    +.+++|+|||++|+++
T Consensus       279 ~~~~~~~~~v~viD~~t~~~v~~i~~~~------------------------------------p~~ia~spdg~~l~v~  322 (361)
T 2oiz_A          279 GTHKFPAAEIWVMDTKTKQRVARIPGRD------------------------------------ALSMTIDQQRNLMLTL  322 (361)
T ss_dssp             TCTTCCCSEEEEEETTTTEEEEEEECTT------------------------------------CCEEEEETTTTEEEEE
T ss_pred             ccccCCCceEEEEECCCCcEEEEEecCC------------------------------------eeEEEECCCCCEEEEe
Confidence                  3589999999998887775432                                    5677888899999988


Q ss_pred             eCCCeEEEEeCCCC--ceeeeecccCCCeeEeeecCCc
Q psy12697        499 GVDKTTIIWDAASG--QCEQQFSFHSAPALDVDWQSNT  534 (602)
Q Consensus       499 ~~dg~i~iwd~~~~--~~~~~~~~~~~~v~~~~~s~~~  534 (602)
                      +. +.|.+||..++  +.+..+..+......++++|+|
T Consensus       323 n~-~~v~v~D~~t~~l~~~~~i~~~G~~P~~~~~~p~G  359 (361)
T 2oiz_A          323 DG-GNVNVYDISQPEPKLLRTIEGAAEASLQVQFHPVG  359 (361)
T ss_dssp             CS-SCEEEEECSSSSCEEEEEETTSCSSEEEEEECCCS
T ss_pred             CC-CeEEEEECCCCcceeeEEeccCCCCcEEEEecCCC
Confidence            86 99999999999  9888886677778899999997

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.83  E-value=4.5e-18  Score=164.65  Aligned_cols=266  Identities=13%  Similarity=0.042  Sum_probs=172.9

Q ss_pred             EEEEeCC--CeEEEEcCC--Ccceeecc----cccCCeEEEEEccCCCEEEEEecCCcEEEEeCC-CCceeEEeeec-cC
Q psy12697        295 LATGSYD--GYARIWTSD--GSLKSTLG----QHKGPIFALKWNKRGNYILSAGVDKTTIIWDAA-SGQCEQQFSFH-SA  364 (602)
Q Consensus       295 l~~~~~d--g~i~i~~~~--~~~~~~~~----~~~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~-~~~~~~~~~~~-~~  364 (602)
                      +++|+..  +.|.+|+++  ......+.    .....+..++|+|++++|++++.+ .|.+|++. +++........ ..
T Consensus         5 ~~vg~~~~~~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g   83 (365)
T 1jof_A            5 LMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGG   83 (365)
T ss_dssp             EEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCS
T ss_pred             EEEEEccCCCcEEEEEEECCCCCEEEeeEEccCCCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecCC
Confidence            4555543  457776542  22222221    233467889999999999998888 99999997 77665433321 13


Q ss_pred             CeeeeeccCCCe--EE-Eee-------------CCCeEEEEEcC-CCceeeEec----cCCCCeEEEEECCCCCEEEEEE
Q psy12697        365 PALDVDWQSNTS--FA-SCS-------------TDQHIHVCKLH-SDKPVKSFE----GHTNEVNAIKWDPQGLLLASCS  423 (602)
Q Consensus       365 ~~~~~~~~~~~~--~~-~~~-------------~~~~i~i~d~~-~~~~~~~~~----~~~~~i~~~~~~~~~~~l~~~~  423 (602)
                      ....++++|++.  ++ ++.             .++.+.+|++. .++....+.    .+...+.+++|+|+|++|++++
T Consensus        84 ~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~  163 (365)
T 1jof_A           84 HPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSAD  163 (365)
T ss_dssp             SGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEE
T ss_pred             CCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEc
Confidence            356789999987  33 442             68999999997 455443333    2456799999999999888876


Q ss_pred             C-CCeEEEEeCC-CCeeeEeeccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeC-
Q psy12697        424 D-DMTLKIWSLD-KDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGV-  500 (602)
Q Consensus       424 ~-dg~i~iwd~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~-  500 (602)
                      . ++.|++||+. +++.....        .+.                      ...+...+..++|+|||++|++++. 
T Consensus       164 ~~~~~v~~~~~~~~g~~~~~~--------~~~----------------------~~~~g~~p~~~~~spdg~~l~v~~~~  213 (365)
T 1jof_A          164 LTANKLWTHRKLASGEVELVG--------SVD----------------------APDPGDHPRWVAMHPTGNYLYALMEA  213 (365)
T ss_dssp             TTTTEEEEEEECTTSCEEEEE--------EEE----------------------CSSTTCCEEEEEECTTSSEEEEEETT
T ss_pred             CCCCEEEEEEECCCCCEEEee--------eEe----------------------cCCCCCCCCEeEECCCCCEEEEEECC
Confidence            4 6799999998 55432110        000                      0012345778889999999888775 


Q ss_pred             CCeEEEEeCC--CCceee------eec----ccCC------CeeEee-ecCCc-eEEEeeCC-C-----cEEEeecC-CC
Q psy12697        501 DKTTIIWDAA--SGQCEQ------QFS----FHSA------PALDVD-WQSNT-SFASCSTD-Q-----HIHVCKLH-SD  553 (602)
Q Consensus       501 dg~i~iwd~~--~~~~~~------~~~----~~~~------~v~~~~-~s~~~-~l~~~~~d-~-----~i~iw~~~-~~  553 (602)
                      ++.|.+|++.  +++...      .+.    +|..      .+..++ |+||| +|++++.+ +     .|.+|++. ++
T Consensus       214 ~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g  293 (365)
T 1jof_A          214 GNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCG  293 (365)
T ss_dssp             TTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTS
T ss_pred             CCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCC
Confidence            6899999765  565421      221    1222      478899 99999 67665543 3     89999986 44


Q ss_pred             CceeeeecccccceEEEEe-cCCcEEEEEECC---CCCeEEEeccC-CeEEe
Q psy12697        554 KPVKSFEGHTTGQLVHSYK-GTGGIFEVCWNS---RGDKVGASASD-GSVFK  600 (602)
Q Consensus       554 ~~~~~~~~~~~~~~~~~~~-~~~~i~~l~~sp---dg~~l~~~~~d-g~v~i  600 (602)
                      +......         ... ....+..++|+|   ||++|++++.+ +.|.|
T Consensus       294 ~~~~~~~---------~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v  336 (365)
T 1jof_A          294 SIEKQLF---------LSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEI  336 (365)
T ss_dssp             CEEEEEE---------EEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEE
T ss_pred             CEEEeee---------eeecCCCCcccceecCCCcCCCEEEEEEcCCCeEEE
Confidence            4222110         011 123356789999   89999999875 77765

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.83  E-value=1.7e-18  Score=167.56  Aligned_cols=248  Identities=9%  Similarity=0.103  Sum_probs=169.4

Q ss_pred             CceeEEeeCCCCCeEEEEeCCCeEEEEcCC--Ccceeeccc-ccCCeEEEEEccCCCE--EEEEe-------------cC
Q psy12697        281 KDVTSLDWNNNGSFLATGSYDGYARIWTSD--GSLKSTLGQ-HKGPIFALKWNKRGNY--ILSAG-------------VD  342 (602)
Q Consensus       281 ~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~--~~~~~~~~~-~~~~i~~~~~~~~~~~--l~~~~-------------~d  342 (602)
                      ..+..++|+|+|++|++++.+ .|.+|++.  ++....... ..+.+.+++|+|+|++  ++++.             .+
T Consensus        40 ~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~  118 (365)
T 1jof_A           40 EPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFA  118 (365)
T ss_dssp             CCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSC
T ss_pred             CCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecCCCCccEEECCCCCEEEEEEecCCcceeccceeecCC
Confidence            467899999999999998887 99999974  443322211 1123556899999995  44543             68


Q ss_pred             CcEEEEeCC-CCceeEEeee----ccCCeeeeeccCCCe-EEEee-CCCeEEEEEcC-CCcee--eEec--cCCCCeEEE
Q psy12697        343 KTTIIWDAA-SGQCEQQFSF----HSAPALDVDWQSNTS-FASCS-TDQHIHVCKLH-SDKPV--KSFE--GHTNEVNAI  410 (602)
Q Consensus       343 g~i~~wd~~-~~~~~~~~~~----~~~~~~~~~~~~~~~-~~~~~-~~~~i~i~d~~-~~~~~--~~~~--~~~~~i~~~  410 (602)
                      |.+.+|++. +++....+..    +...+..+.|+|++. ++++. .++.|++|++. +++..  ..+.  .|...+..+
T Consensus       119 g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~  198 (365)
T 1jof_A          119 GYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWV  198 (365)
T ss_dssp             CEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEE
T ss_pred             ceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEe
Confidence            999999997 4665544432    446788999999976 44444 46799999998 66543  2333  245679999


Q ss_pred             EECCCCCEEEEEEC-CCeEEEEeCC--CCeeeEeeccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccC------
Q psy12697        411 KWDPQGLLLASCSD-DMTLKIWSLD--KDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKG------  481 (602)
Q Consensus       411 ~~~~~~~~l~~~~~-dg~i~iwd~~--~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------  481 (602)
                      +|+|+|++|++++. ++.|.+|+++  +++......       .+...|.+                 ..++..      
T Consensus       199 ~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~-------~~~~~~~~-----------------~~g~~~~~~~~~  254 (365)
T 1jof_A          199 AMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHH-------SFPLIPPG-----------------IPDRDPETGKGL  254 (365)
T ss_dssp             EECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEE-------EEESSCTT-----------------CCCBCTTTSSBS
T ss_pred             EECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccc-------eEEcCCCC-----------------cCCccccccccc
Confidence            99999999988875 6899999865  343321000       01101100                 011222      


Q ss_pred             CeEEEE-EccCCCEEEEEeCCC------eEEEEeCC-CCceee---eecccCCCeeEeeecC---Cc-eEEEeeC-CCcE
Q psy12697        482 PIFALK-WNKRGNYILSAGVDK------TTIIWDAA-SGQCEQ---QFSFHSAPALDVDWQS---NT-SFASCST-DQHI  545 (602)
Q Consensus       482 ~v~~i~-~s~~~~~l~s~~~dg------~i~iwd~~-~~~~~~---~~~~~~~~v~~~~~s~---~~-~l~~~~~-d~~i  545 (602)
                      .+..++ |+|||++|+++..+.      .|.+|++. +++...   ....+...+..++|+|   || +|++++. ++.|
T Consensus       255 ~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v  334 (365)
T 1jof_A          255 YRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWL  334 (365)
T ss_dssp             EEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEE
T ss_pred             ccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCCEEEEEEcCCCeE
Confidence            577899 999999988765432      89999996 666543   2333555677899999   78 8888776 4899


Q ss_pred             EEeecCCC
Q psy12697        546 HVCKLHSD  553 (602)
Q Consensus       546 ~iw~~~~~  553 (602)
                      .+|+++..
T Consensus       335 ~v~~~~~~  342 (365)
T 1jof_A          335 EIYRWKDE  342 (365)
T ss_dssp             EEEEEETT
T ss_pred             EEEEEchh
Confidence            99998654

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.82  E-value=1.8e-18  Score=182.11  Aligned_cols=296  Identities=9%  Similarity=0.041  Sum_probs=199.5

Q ss_pred             eEeeCCCcceEEEEEcCCCCEEEEe--eCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCcee---------
Q psy12697        216 TKLIGHESEVFICAWNPVKDFLASG--SGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVT---------  284 (602)
Q Consensus       216 ~~l~~h~~~v~~~~~~~~~~~l~s~--~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~---------  284 (602)
                      ..+.+|...+..++|+++.-+++..  +.++...||....+...     ..+           ..+...+.         
T Consensus        17 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~l-----------~~~~~~~~~~~~~~~~~   80 (662)
T 3azo_A           17 ALVASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAE-----ESA-----------LPAPWNVRNRVFEYSGF   80 (662)
T ss_dssp             HHHHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCE-----EES-----------SCTTCCBCCCGGGTCCC
T ss_pred             HHHhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCc-----cee-----------CCCCccccccccccCCc
Confidence            3456789999999999887666666  55889999996433211     000           01112223         


Q ss_pred             EEeeC--CCCCe-EEEEeC-CCeEEEEcCC--C-cceeeccc-----ccCCeEEEEEccCCCEEEEEecC----------
Q psy12697        285 SLDWN--NNGSF-LATGSY-DGYARIWTSD--G-SLKSTLGQ-----HKGPIFALKWNKRGNYILSAGVD----------  342 (602)
Q Consensus       285 ~~~~~--~~~~~-l~~~~~-dg~i~i~~~~--~-~~~~~~~~-----~~~~i~~~~~~~~~~~l~~~~~d----------  342 (602)
                      ...|+  |||+. |+.+.. +..|.+++..  + .....+..     |...+..++|+|||+.|++++.+          
T Consensus        81 ~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~  160 (662)
T 3azo_A           81 PWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVR  160 (662)
T ss_dssp             CEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEE
T ss_pred             cceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCce
Confidence            44454  99998 776654 5778888877  4 44555555     56778999999999999988876          


Q ss_pred             CcEEEEeCCC------CceeEEee-eccCCeeeeeccCCCe-EEEeeCC--------CeEEEEEcC-CC---ceeeEecc
Q psy12697        343 KTTIIWDAAS------GQCEQQFS-FHSAPALDVDWQSNTS-FASCSTD--------QHIHVCKLH-SD---KPVKSFEG  402 (602)
Q Consensus       343 g~i~~wd~~~------~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~--------~~i~i~d~~-~~---~~~~~~~~  402 (602)
                      ..|.+||+.+      ++. ..+. .+...+..+.|+|++. ++.++.+        ..|++||+. ++   +......+
T Consensus       161 ~~i~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~  239 (662)
T 3azo_A          161 RFLAAVPLDGSAAADRSAV-RELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGG  239 (662)
T ss_dssp             EEEEEEETTSTTTTCGGGS-EESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEE
T ss_pred             eEEEEEECCCCccccCCce-eEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCC
Confidence            5899999988      544 3444 4456778889999976 5555533        479999998 56   44444455


Q ss_pred             CCCCeEEEEECCCCCEEEEEECCC--eEEEEeCCCCeeeEeeccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCcc
Q psy12697        403 HTNEVNAIKWDPQGLLLASCSDDM--TLKIWSLDKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHK  480 (602)
Q Consensus       403 ~~~~i~~~~~~~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  480 (602)
                      |...+..++|+|||+++++++.++  .|.+||+.+++...... +...+....|++                        
T Consensus       240 ~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~-~~~~~~~p~w~~------------------------  294 (662)
T 3azo_A          240 PEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCR-REEEFAGPLWTP------------------------  294 (662)
T ss_dssp             TTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSC-CSSBSSCCCCST------------------------
T ss_pred             CCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeeccc-ccccccCccccc------------------------
Confidence            678899999999999888888888  67777765655433222 222111111221                        


Q ss_pred             CCeEEEEEccCCCEEEEEeCCCeEEEE--eCCCCceeeeecccCCCeeEe-eecCCc-eEEEeeCCC--cEEEeecCCCC
Q psy12697        481 GPIFALKWNKRGNYILSAGVDKTTIIW--DAASGQCEQQFSFHSAPALDV-DWQSNT-SFASCSTDQ--HIHVCKLHSDK  554 (602)
Q Consensus       481 ~~v~~i~~s~~~~~l~s~~~dg~i~iw--d~~~~~~~~~~~~~~~~v~~~-~~s~~~-~l~~~~~d~--~i~iw~~~~~~  554 (602)
                       .+..++|+|++++++++.. +.++||  |+.+++ +..+..|...+..+ .++++. .+++++.+.  .|.+||+.+++
T Consensus       295 -~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~~-~~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~d~~~g~  371 (662)
T 3azo_A          295 -GMRWFAPLANGLIAVVHGK-GAAVLGILDPESGE-LVDAAGPWTEWAATLTVSGTRAVGVAASPRTAYEVVELDTVTGR  371 (662)
T ss_dssp             -TCCSEEECTTSCEEEEEBS-SSCEEEEEETTTTE-EEECCSSCCEEEEEEEEETTEEEEEEEETTEEEEEEEEETTTCC
T ss_pred             -cCceEeEeCCCEEEEEEEc-CccEEEEEECCCCc-EEEecCCCCeEEEEEecCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence             1345889999999999998 999999  655555 66777777777777 565555 445555554  45555666665


Q ss_pred             ce
Q psy12697        555 PV  556 (602)
Q Consensus       555 ~~  556 (602)
                      ..
T Consensus       372 ~~  373 (662)
T 3azo_A          372 AR  373 (662)
T ss_dssp             EE
T ss_pred             eE
Confidence            43

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.80  E-value=1.4e-15  Score=153.44  Aligned_cols=329  Identities=13%  Similarity=0.068  Sum_probs=221.6

Q ss_pred             ccceeeeecccceeeeeeeccCCceEEEEECCCCCeEEEeeCCceEEEEecC--CceeEEEeeccCceEEEEeCCCCCCC
Q psy12697        119 RLTLPLWDVERGECLNTLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSAR--TGQLVHSYKGTGGIFEVCWNSRGTPP  196 (602)
Q Consensus       119 ~~~i~vwd~~~~~~~~~l~~h~~~V~~~~~s~d~~~l~s~~~d~~v~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (602)
                      .++|.++|..+++.+.++... ..+..+.|||||++|++++.|+.|.+||+.  +++.+.+++.                
T Consensus       176 ~~~V~viD~~t~~v~~~i~~g-~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~----------------  238 (567)
T 1qks_A          176 AGQIALIDGSTYEIKTVLDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKI----------------  238 (567)
T ss_dssp             TTEEEEEETTTCCEEEEEECS-SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEEC----------------
T ss_pred             CCeEEEEECCCCeEEEEEeCC-CCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEec----------------
Confidence            468999999999999988743 356799999999999999999999999996  7777655432                


Q ss_pred             CCCCCccccccccccCCcceEeeCCCcceEEEEEc----CCCCEEEEeeC-CCcEEEEeCCCCCCCCCccceEEEEEEec
Q psy12697        197 NPPESMEVDASIEIPQSKATKLIGHESEVFICAWN----PVKDFLASGSG-DSTARIWDMTDSTKKDPKELQIVLRHCIS  271 (602)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~----~~~~~l~s~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~  271 (602)
                                               ......++|+    |||+++++++. ++.+.++|..+.+.........     ..
T Consensus       239 -------------------------G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~-----~~  288 (567)
T 1qks_A          239 -------------------------GSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRG-----MT  288 (567)
T ss_dssp             -------------------------CSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCE-----EC
T ss_pred             -------------------------CCCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccc-----cc
Confidence                                     2235678999    69998887765 5999999987655322111100     00


Q ss_pred             CCCcccCCCCceeEEeeCCCCCeEEE-EeCCCeEEEEcCCCcc--eeecccccCCeEEEEEccCCCEEEEEe-cCCcEEE
Q psy12697        272 KGGTEVPSNKDVTSLDWNNNGSFLAT-GSYDGYARIWTSDGSL--KSTLGQHKGPIFALKWNKRGNYILSAG-VDKTTII  347 (602)
Q Consensus       272 ~~~~~~~~~~~i~~~~~~~~~~~l~~-~~~dg~i~i~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~~  347 (602)
                      ...........+..+..++++..+++ ...+|.|.++|.....  ............++.|+|++++++++. .++.|.+
T Consensus       289 ~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~V  368 (567)
T 1qks_A          289 YDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVV  368 (567)
T ss_dssp             TTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEE
T ss_pred             cccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEE
Confidence            00000011235778888887665444 4556999999976421  111112344567889999999987665 5789999


Q ss_pred             EeCCCCceeEEeee-ccCC--eeeee-ccCC-CeEEEee--CCCeEEEEEcCC-------CceeeEeccCCCCeEEEEEC
Q psy12697        348 WDAASGQCEQQFSF-HSAP--ALDVD-WQSN-TSFASCS--TDQHIHVCKLHS-------DKPVKSFEGHTNEVNAIKWD  413 (602)
Q Consensus       348 wd~~~~~~~~~~~~-~~~~--~~~~~-~~~~-~~~~~~~--~~~~i~i~d~~~-------~~~~~~~~~~~~~i~~~~~~  413 (602)
                      +|+.+++....+.. ...+  -.... +.|+ +.+.+.+  .++.|.++|..+       .+.+.++......-..+..+
T Consensus       369 iD~~t~kl~~~i~vgg~~Phpg~g~~~~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~  448 (567)
T 1qks_A          369 IDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTH  448 (567)
T ss_dssp             EETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECC
T ss_pred             EECCCCcEEEEEeccCcCCCCccceeeECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeC
Confidence            99999988877655 2221  12222 3565 4444333  468999999987       56777777654444567899


Q ss_pred             CCCCEEEEEEC-------CCeEEEEeCCCC-----eee-EeeccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCcc
Q psy12697        414 PQGLLLASCSD-------DMTLKIWSLDKD-----NCV-HDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHK  480 (602)
Q Consensus       414 ~~~~~l~~~~~-------dg~i~iwd~~~~-----~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  480 (602)
                      |++++|.+...       .++|.++|+.+.     ... ..+...       .|+                   .+....
T Consensus       449 p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~-------~~~-------------------~~~~~~  502 (567)
T 1qks_A          449 PNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIA-------EWA-------------------GITEGQ  502 (567)
T ss_dssp             TTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHH-------HHH-------------------TCCSSC
T ss_pred             CCCCeEEEecCCCCCcccCceEEEEECCcccccccCCCcEEeccc-------ccc-------------------ccCCCC
Confidence            99999998763       358999998865     111 111100       000                   011123


Q ss_pred             CCeEEEEEccCCCEEEEEe-----CCCeEEEEeCCCCceeeeecc
Q psy12697        481 GPIFALKWNKRGNYILSAG-----VDKTTIIWDAASGQCEQQFSF  520 (602)
Q Consensus       481 ~~v~~i~~s~~~~~l~s~~-----~dg~i~iwd~~~~~~~~~~~~  520 (602)
                      ..+..+.|+|+|+++..+.     .++.|.|+|..+++++..+..
T Consensus       503 ~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i~~  547 (567)
T 1qks_A          503 PRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLELKHVIKD  547 (567)
T ss_dssp             CEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTTEEEEEECC
T ss_pred             cceEeeeECCCCCEEEEEeecCCCCCCcEEEEECCCceEEEEeCC
Confidence            4677888889998877663     379999999999998888774

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.80  E-value=4.3e-16  Score=145.31  Aligned_cols=239  Identities=11%  Similarity=0.168  Sum_probs=175.9

Q ss_pred             CCceeEEeeCCCCCeEEEEeCCCeEEEEcCCCcceeecc------cccCCeEEEEE-ccCCCEEEEEec-CCcEEEEeCC
Q psy12697        280 NKDVTSLDWNNNGSFLATGSYDGYARIWTSDGSLKSTLG------QHKGPIFALKW-NKRGNYILSAGV-DKTTIIWDAA  351 (602)
Q Consensus       280 ~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~------~~~~~i~~~~~-~~~~~~l~~~~~-dg~i~~wd~~  351 (602)
                      -..+.+++++++++++++...++.|.+|+.++.....+.      .+...+..+++ .++++.+++... ++.|.+|| .
T Consensus        29 ~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d-~  107 (286)
T 1q7f_A           29 FTEPSGVAVNAQNDIIVADTNNHRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYN-Q  107 (286)
T ss_dssp             BSCEEEEEECTTCCEEEEEGGGTEEEEECTTSCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEEC-T
T ss_pred             cCCCceEEECCCCCEEEEECCCCEEEEECCCCcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEEC-C
Confidence            356899999999998888888999999998877665553      23457889999 467766665543 88999999 5


Q ss_pred             CCceeEEeee-ccCCeeeeeccCCCeEEEe-eCCCeEEEEEcCCCceeeEec--cCCCCeEEEEECCCCCEEEEEECCCe
Q psy12697        352 SGQCEQQFSF-HSAPALDVDWQSNTSFASC-STDQHIHVCKLHSDKPVKSFE--GHTNEVNAIKWDPQGLLLASCSDDMT  427 (602)
Q Consensus       352 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~i~i~d~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~dg~  427 (602)
                      +++.+..+.. ....+..+++.+++.++++ ..++.|.+||.. ++.+..+.  .+...+..++++|+|+++++...++.
T Consensus       108 ~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~  186 (286)
T 1q7f_A          108 YGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHC  186 (286)
T ss_dssp             TSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTE
T ss_pred             CCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCC-CCEEEEeCCCCccCCcEEEEECCCCCEEEEECCCCE
Confidence            6776666543 3346788899888766555 457899999964 55555553  34557899999999998888888899


Q ss_pred             EEEEeCCCCeeeEeeccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCCC-eEEE
Q psy12697        428 LKIWSLDKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDK-TTII  506 (602)
Q Consensus       428 i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg-~i~i  506 (602)
                      |++||.. ++.+..+...                                ++...+..++++++|+++++...++ .|.+
T Consensus       187 i~~~~~~-g~~~~~~~~~--------------------------------g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~  233 (286)
T 1q7f_A          187 VKVFNYE-GQYLRQIGGE--------------------------------GITNYPIGVGINSNGEILIADNHNNFNLTI  233 (286)
T ss_dssp             EEEEETT-CCEEEEESCT--------------------------------TTSCSEEEEEECTTCCEEEEECSSSCEEEE
T ss_pred             EEEEcCC-CCEEEEEccC--------------------------------CccCCCcEEEECCCCCEEEEeCCCCEEEEE
Confidence            9999974 4444333211                                1224567888999999888888776 9999


Q ss_pred             EeCCCCceeeeecccCC--CeeEeeecCCceEEEeeCCCcEEEeecCCCC
Q psy12697        507 WDAASGQCEQQFSFHSA--PALDVDWQSNTSFASCSTDQHIHVCKLHSDK  554 (602)
Q Consensus       507 wd~~~~~~~~~~~~~~~--~v~~~~~s~~~~l~~~~~d~~i~iw~~~~~~  554 (602)
                      ||. +++.+..+..+..  .+.+++++|+|.+++++.|+.|++|++....
T Consensus       234 ~~~-~g~~~~~~~~~~~~~~~~~i~~~~~g~l~vs~~~~~v~v~~~~~~~  282 (286)
T 1q7f_A          234 FTQ-DGQLISALESKVKHAQCFDVALMDDGSVVLASKDYRLYIYRYVQLA  282 (286)
T ss_dssp             ECT-TSCEEEEEEESSCCSCEEEEEEETTTEEEEEETTTEEEEEECSCCC
T ss_pred             ECC-CCCEEEEEcccCCCCcceeEEECCCCcEEEECCCCeEEEEEccccc
Confidence            995 5777777765443  3779999999944434679999999976543

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.79  E-value=8.8e-18  Score=165.03  Aligned_cols=278  Identities=10%  Similarity=0.037  Sum_probs=178.8

Q ss_pred             ceeEEeeCCCCCeEEEEeCC---CeEEEEcCCCcceeecccccCCeE-EEEEccCCCEEEEEecCCcEEEEeCCCCceeE
Q psy12697        282 DVTSLDWNNNGSFLATGSYD---GYARIWTSDGSLKSTLGQHKGPIF-ALKWNKRGNYILSAGVDKTTIIWDAASGQCEQ  357 (602)
Q Consensus       282 ~i~~~~~~~~~~~l~~~~~d---g~i~i~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~  357 (602)
                      .+..++|+|+|++|+.....   ..|.+|+..+.....+..+..... .+.|+|+|++|+.++.++.+.+||+.+++...
T Consensus        37 ~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~  116 (396)
T 3c5m_A           37 YFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDERAFFYVKNELNLMKVDLETLEEQV  116 (396)
T ss_dssp             CTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCCEEE
T ss_pred             eeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCCCEEEEEEcCCcEEEEECCCCCcEE
Confidence            36778999999998877553   368888987665555544443333 37899999999999999999999999887665


Q ss_pred             EeeeccCCeee-------------------eeccCCCeE-EEe-----eCCCeEEEEEcCCCceeeEeccCCCCeEEEEE
Q psy12697        358 QFSFHSAPALD-------------------VDWQSNTSF-ASC-----STDQHIHVCKLHSDKPVKSFEGHTNEVNAIKW  412 (602)
Q Consensus       358 ~~~~~~~~~~~-------------------~~~~~~~~~-~~~-----~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~  412 (602)
                      ....+......                   ..|+|++.. +..     ..+..|++||+.+++..... .+...+..+.|
T Consensus       117 ~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~-~~~~~~~~~~~  195 (396)
T 3c5m_A          117 IYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIH-QDTAWLGHPIY  195 (396)
T ss_dssp             EEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEE-EESSCEEEEEE
T ss_pred             EEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeec-cCCcccccceE
Confidence            55433332222                   355665542 222     35668999999988765444 46677899999


Q ss_pred             CC-CCCEEEEEECC------CeEEEEeCCCCeeeEeeccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEE
Q psy12697        413 DP-QGLLLASCSDD------MTLKIWSLDKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFA  485 (602)
Q Consensus       413 ~~-~~~~l~~~~~d------g~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  485 (602)
                      +| +++.|+..+.+      ..|.+||+..++.. .+..+.                                ....+..
T Consensus       196 sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~~~~--------------------------------~~~~~~~  242 (396)
T 3c5m_A          196 RPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVR-KIKEHA--------------------------------EGESCTH  242 (396)
T ss_dssp             ETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCE-ESSCCC--------------------------------TTEEEEE
T ss_pred             CCCCCCEEEEEecCCCCCCCceEEEEECCCCcee-EeeccC--------------------------------CCccccc
Confidence            99 88877776653      35788887654322 111110                                0123566


Q ss_pred             EEEccCCCEEEEEeCC-----CeEEEEeCCCCceeeeecccCCCeeEeeecC-Cc-eEEEee----------------CC
Q psy12697        486 LKWNKRGNYILSAGVD-----KTTIIWDAASGQCEQQFSFHSAPALDVDWQS-NT-SFASCS----------------TD  542 (602)
Q Consensus       486 i~~s~~~~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~-~~-~l~~~~----------------~d  542 (602)
                      ++|+|||++|+.++.+     +.|++||+.+++........  ... +.|+| || .+++++                .+
T Consensus       243 ~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~--~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~  319 (396)
T 3c5m_A          243 EFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMVMP--PCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIEND  319 (396)
T ss_dssp             EEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEECC--SEE-EEEECSSSSEEEEEECCC----------CCCCC
T ss_pred             eEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeeeCC--CCC-CCccCCCCceEEEecCCcceeeccccccccCCC
Confidence            7888899888777654     45999999988754433211  123 88999 99 666654                34


Q ss_pred             CcEEEeecCCCCceeeeecccccceEEEEecCCcEEEEEECCCCCeEEEecc-CCe
Q psy12697        543 QHIHVCKLHSDKPVKSFEGHTTGQLVHSYKGTGGIFEVCWNSRGDKVGASAS-DGS  597 (602)
Q Consensus       543 ~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~-dg~  597 (602)
                      ..|++||+.+++.. .+..+...-..........+..++|+|||+.|+.++. ++.
T Consensus       320 ~~i~~~d~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~  374 (396)
T 3c5m_A          320 PFLYVLNTKAKSAQ-KLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGV  374 (396)
T ss_dssp             CEEEEEETTTTBCC-EEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSS
T ss_pred             CcEEEEecccCceE-EccCCCCccccccccccCCCCCceEccCCCeEEEEecCCCC
Confidence            78999998876542 2222210000000000002456789999998887765 443

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.79  E-value=8.8e-17  Score=152.96  Aligned_cols=244  Identities=12%  Similarity=0.158  Sum_probs=179.6

Q ss_pred             CCceeEEeeCCCCCeEEEEeCC------------------------CeEEEEcCC-Ccceeecc-cccCCeEEEEEccCC
Q psy12697        280 NKDVTSLDWNNNGSFLATGSYD------------------------GYARIWTSD-GSLKSTLG-QHKGPIFALKWNKRG  333 (602)
Q Consensus       280 ~~~i~~~~~~~~~~~l~~~~~d------------------------g~i~i~~~~-~~~~~~~~-~~~~~i~~~~~~~~~  333 (602)
                      -..+.+++++|+|+++++...+                        +.|.+||.. +....... .+......++++|+|
T Consensus        23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g  102 (329)
T 3fvz_A           23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDG  102 (329)
T ss_dssp             CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTS
T ss_pred             cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCCC
Confidence            3679999999999999888777                        479999986 66554443 344578999999999


Q ss_pred             CEEEEEecCCcEEEEeCCCCc-eeEEee---------eccCCeeeeeccC-CCeEEEee--CCCeEEEEEcCCCceeeEe
Q psy12697        334 NYILSAGVDKTTIIWDAASGQ-CEQQFS---------FHSAPALDVDWQS-NTSFASCS--TDQHIHVCKLHSDKPVKSF  400 (602)
Q Consensus       334 ~~l~~~~~dg~i~~wd~~~~~-~~~~~~---------~~~~~~~~~~~~~-~~~~~~~~--~~~~i~i~d~~~~~~~~~~  400 (602)
                      +.+++...++.|++||..... .+..+.         .+...+..+++.+ ++.++++.  .++.|++|+ .+++.+..+
T Consensus       103 ~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~~g~~~~~~  181 (329)
T 3fvz_A          103 NYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-PSGKFVTQW  181 (329)
T ss_dssp             CEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-TTSCEEEEE
T ss_pred             CEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-CCCCEEEEe
Confidence            988888888999999976542 444442         2233578899998 66665555  589999999 566666666


Q ss_pred             ccC----------CCCeEEEEECCC-CCEEEEEECCCeEEEEeCCCCeeeEeecc--ccccEEEEEECCCCCCCCCCCcc
Q psy12697        401 EGH----------TNEVNAIKWDPQ-GLLLASCSDDMTLKIWSLDKDNCVHDLQA--HNKEIYTIKWSPTGPETSNPNMS  467 (602)
Q Consensus       401 ~~~----------~~~i~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~--~~~~i~~~~~~~~~~~~~~~~~~  467 (602)
                      ...          ......++++|+ +.++++...++.|++||..+++.+..+..  +...+..++++| +         
T Consensus       182 ~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~p-g---------  251 (329)
T 3fvz_A          182 GEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIP-G---------  251 (329)
T ss_dssp             CEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEET-T---------
T ss_pred             ccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecC-C---------
Confidence            422          234899999998 77777777889999999988887777642  233344444443 1         


Q ss_pred             eeeeeeeccCCccCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeeec---ccCCCeeEeeecCCc-eEEEeeCCC
Q psy12697        468 LIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFS---FHSAPALDVDWQSNT-SFASCSTDQ  543 (602)
Q Consensus       468 ~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~---~~~~~v~~~~~s~~~-~l~~~~~d~  543 (602)
                                        +.+..+|+..++...+..|++||..+++.+..+.   .+...+..++++|+| .+++...++
T Consensus       252 ------------------~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~  313 (329)
T 3fvz_A          252 ------------------FLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTN  313 (329)
T ss_dssp             ------------------EEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSC
T ss_pred             ------------------EEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCC
Confidence                              1222245545555556789999999999988873   566778999999999 888888899


Q ss_pred             cEEEeecCC
Q psy12697        544 HIHVCKLHS  552 (602)
Q Consensus       544 ~i~iw~~~~  552 (602)
                      .|++|++..
T Consensus       314 ~I~~~~~~~  322 (329)
T 3fvz_A          314 TVWKFTLTE  322 (329)
T ss_dssp             CEEEEEEEE
T ss_pred             EEEEEeCCc
Confidence            999999753

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.79  E-value=8.3e-17  Score=153.89  Aligned_cols=271  Identities=9%  Similarity=0.050  Sum_probs=187.8

Q ss_pred             CceeEEeeCCCCCeEEEEeCCCeEEEEcCCCcceeecccccCCeEEEEEccCCCEEEEEecCCcEEEEeCCCCceeEEee
Q psy12697        281 KDVTSLDWNNNGSFLATGSYDGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFS  360 (602)
Q Consensus       281 ~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~  360 (602)
                      ..+.++.|++++..++....++.++.|  .+.....+..+...+.+++|+++++.++++..++.|.+||..+++......
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~   83 (333)
T 2dg1_A            6 QDLPTLFYSGKSNSAVPIISESELQTI--TAEPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFV   83 (333)
T ss_dssp             CCCCBCCSCGGGGCSSCCCCGGGSCEE--ECEEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEE
T ss_pred             cccceeeecCCccceeEEeecccCccc--ccceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEee
Confidence            457888999988877777788888888  444555666677778999999999977788889999999999887665444


Q ss_pred             eccCCeeeeeccCCCeEEEeeCC-----CeEEEEEcCCCceeeEec--cCCCCeEEEEECCCCCEEEEEEC------CCe
Q psy12697        361 FHSAPALDVDWQSNTSFASCSTD-----QHIHVCKLHSDKPVKSFE--GHTNEVNAIKWDPQGLLLASCSD------DMT  427 (602)
Q Consensus       361 ~~~~~~~~~~~~~~~~~~~~~~~-----~~i~i~d~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~------dg~  427 (602)
                      .....+..+++++++.++++...     +.|.+||..+++....+.  .+...+..++++|+|+++++...      .+.
T Consensus        84 ~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~  163 (333)
T 2dg1_A           84 SHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGG  163 (333)
T ss_dssp             CSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEE
T ss_pred             CCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCCCce
Confidence            45677899999998876666544     589999998876543332  24457999999999988877654      355


Q ss_pred             EEEEeCCCCeeeEeeccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEE-EEeCCCeEEE
Q psy12697        428 LKIWSLDKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYIL-SAGVDKTTII  506 (602)
Q Consensus       428 i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~-s~~~dg~i~i  506 (602)
                      |..+|..+++... +..                                  ....+..++|+|+|++|+ +...++.|.+
T Consensus       164 l~~~~~~~~~~~~-~~~----------------------------------~~~~~~~i~~~~dg~~l~v~~~~~~~i~~  208 (333)
T 2dg1_A          164 VYYVSPDFRTVTP-IIQ----------------------------------NISVANGIALSTDEKVLWVTETTANRLHR  208 (333)
T ss_dssp             EEEECTTSCCEEE-EEE----------------------------------EESSEEEEEECTTSSEEEEEEGGGTEEEE
T ss_pred             EEEEeCCCCEEEE-eec----------------------------------CCCcccceEECCCCCEEEEEeCCCCeEEE
Confidence            6666655433221 110                                  112356788888998665 4456789999


Q ss_pred             EeCCC-Cceeee--------ecccCCCeeEeeecCCc-eEEEeeCCCcEEEeecCCCCceeeeecccccceEEEEecCCc
Q psy12697        507 WDAAS-GQCEQQ--------FSFHSAPALDVDWQSNT-SFASCSTDQHIHVCKLHSDKPVKSFEGHTTGQLVHSYKGTGG  576 (602)
Q Consensus       507 wd~~~-~~~~~~--------~~~~~~~v~~~~~s~~~-~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~  576 (602)
                      ||+.+ +..+..        +.++ ..+..++++++| .+++...++.|.+||. +++.+..+.......     .....
T Consensus       209 ~d~~~~g~~~~~~~~~~~~~~~~~-~~~~~i~~d~~G~l~v~~~~~~~v~~~d~-~g~~~~~~~~~~~~~-----g~~~~  281 (333)
T 2dg1_A          209 IALEDDGVTIQPFGATIPYYFTGH-EGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDE-----GHMLR  281 (333)
T ss_dssp             EEECTTSSSEEEEEEEEEEECCSS-SEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGG-----TCSCB
T ss_pred             EEecCCCcCcccccceEEEecCCC-CCCCceEECCCCCEEEEEcCCCEEEEECC-CCCEEEEEEcCCCcc-----ccccC
Confidence            99863 333221        1112 357789999999 6666667889999997 444444443221000     00014


Q ss_pred             EEEEEECCCCCeEEEeccC
Q psy12697        577 IFEVCWNSRGDKVGASASD  595 (602)
Q Consensus       577 i~~l~~spdg~~l~~~~~d  595 (602)
                      +.+++|+||++.|++++.+
T Consensus       282 ~~~~~~~~dg~~L~v~~~~  300 (333)
T 2dg1_A          282 STHPQFIPGTNQLIICSND  300 (333)
T ss_dssp             CCEEEECTTSCEEEEEEEC
T ss_pred             cceEEECCCCCEEEEEeCc
Confidence            7899999999888777766

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.78  E-value=4.1e-16  Score=148.35  Aligned_cols=250  Identities=9%  Similarity=0.087  Sum_probs=184.2

Q ss_pred             CCceEEEEECCCCCeEEEeeCC------------------------ceEEEEecCCceeEEEeeccCceEEEEeCCCCCC
Q psy12697        140 TEPVYSVAFSPDGKFLASGSFD------------------------KCVHIWSARTGQLVHSYKGTGGIFEVCWNSRGTP  195 (602)
Q Consensus       140 ~~~V~~~~~s~d~~~l~s~~~d------------------------~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (602)
                      -+.+.+++++|+|+++++...+                        ++|.+||..+++.+..+.                
T Consensus        23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~----------------   86 (329)
T 3fvz_A           23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSG----------------   86 (329)
T ss_dssp             CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEEC----------------
T ss_pred             cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccC----------------
Confidence            3678999999999999988877                        468888888777654321                


Q ss_pred             CCCCCCccccccccccCCcceEeeCCCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCc
Q psy12697        196 PNPPESMEVDASIEIPQSKATKLIGHESEVFICAWNPVKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGT  275 (602)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (602)
                                             .++......++++|+++++++...++.|++|+.......    .... .. ....+.
T Consensus        87 -----------------------~~~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~----~~~~-~~-~~~~g~  137 (329)
T 3fvz_A           87 -----------------------KNLFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGP----LLIL-GR-SMQPGS  137 (329)
T ss_dssp             -----------------------TTTCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCC----SEEE-SB-TTBCCC
T ss_pred             -----------------------CCccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEE----EEEe-cc-cCCCCC
Confidence                                   134456889999999998888888999999997644211    0000 00 000000


Q ss_pred             ccCCCCceeEEeeCC-CCCeEEEEe-CCCeEEEEcCCCcceeeccc----------ccCCeEEEEEccC-CCEEEEEecC
Q psy12697        276 EVPSNKDVTSLDWNN-NGSFLATGS-YDGYARIWTSDGSLKSTLGQ----------HKGPIFALKWNKR-GNYILSAGVD  342 (602)
Q Consensus       276 ~~~~~~~i~~~~~~~-~~~~l~~~~-~dg~i~i~~~~~~~~~~~~~----------~~~~i~~~~~~~~-~~~l~~~~~d  342 (602)
                      ...+-.....++++| ++.++++.+ .++.|++|+.++.....+..          +......++++|+ ++.+++...+
T Consensus       138 ~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~  217 (329)
T 3fvz_A          138 DQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSPSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADREN  217 (329)
T ss_dssp             STTCCSSEEEEEECTTTCCEEEEECSSCCEEEEECTTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTT
T ss_pred             CccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcCCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCC
Confidence            112234688999999 788888876 68999999988887776643          2234889999998 6666777788


Q ss_pred             CcEEEEeCCCCceeEEeee--ccCCeeeeeccCCCeEEEe--------eCCCeEEEEEcCCCceeeEec---cCCCCeEE
Q psy12697        343 KTTIIWDAASGQCEQQFSF--HSAPALDVDWQSNTSFASC--------STDQHIHVCKLHSDKPVKSFE---GHTNEVNA  409 (602)
Q Consensus       343 g~i~~wd~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~--------~~~~~i~i~d~~~~~~~~~~~---~~~~~i~~  409 (602)
                      +.|++||..+++.+..+..  ....+..+++.| +.++..        ..+..|++|+..+++.+..+.   ++...+..
T Consensus       218 ~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~p-g~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~  296 (329)
T 3fvz_A          218 GRIQCFKTDTKEFVREIKHASFGRNVFAISYIP-GFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHD  296 (329)
T ss_dssp             TEEEEEETTTCCEEEEECCTTTTTCEEEEEEET-TEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEE
T ss_pred             CEEEEEECCCCcEEEEEeccccCCCcceeeecC-CEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeE
Confidence            9999999998988887743  345677888888 333222        234589999999999888873   67778999


Q ss_pred             EEECCCCCEEEEEECCCeEEEEeCCC
Q psy12697        410 IKWDPQGLLLASCSDDMTLKIWSLDK  435 (602)
Q Consensus       410 ~~~~~~~~~l~~~~~dg~i~iwd~~~  435 (602)
                      ++++|+|.++++...++.|++|++..
T Consensus       297 ia~~~dG~lyvad~~~~~I~~~~~~~  322 (329)
T 3fvz_A          297 IVASEDGTVYIGDAHTNTVWKFTLTE  322 (329)
T ss_dssp             EEECTTSEEEEEESSSCCEEEEEEEE
T ss_pred             EEECCCCCEEEEECCCCEEEEEeCCc
Confidence            99999998888888899999999753

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.78  E-value=2.4e-16  Score=147.08  Aligned_cols=245  Identities=12%  Similarity=0.161  Sum_probs=176.8

Q ss_pred             ccCCceEEEEECCCCCeEEEeeCCceEEEEecCCceeEEEeeccCceEEEEeCCCCCCCCCCCCccccccccccCCcceE
Q psy12697        138 RHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKGTGGIFEVCWNSRGTPPNPPESMEVDASIEIPQSKATK  217 (602)
Q Consensus       138 ~h~~~V~~~~~s~d~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  217 (602)
                      +|-..+.+++++++|+++++...++.|.+||.. ++.+..+....                                  .
T Consensus        27 g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~----------------------------------~   71 (286)
T 1q7f_A           27 GQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECG----------------------------------K   71 (286)
T ss_dssp             TCBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBS----------------------------------S
T ss_pred             CccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccC----------------------------------C
Confidence            456779999999999999988899999999987 55554432110                                  0


Q ss_pred             eeCCCcceEEEEEc-CCCCEEEEeeC-CCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEeeCCCCCeE
Q psy12697        218 LIGHESEVFICAWN-PVKDFLASGSG-DSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFL  295 (602)
Q Consensus       218 l~~h~~~v~~~~~~-~~~~~l~s~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l  295 (602)
                      ..+|...+..+++. +++.++++... ++.|.+|+. ++...         .. +.     ......+.+++++|+|+++
T Consensus        72 ~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d~-~g~~~---------~~-~~-----~~~~~~~~~i~~~~~g~l~  135 (286)
T 1q7f_A           72 RDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQ-YGQFV---------RK-FG-----ATILQHPRGVTVDNKGRII  135 (286)
T ss_dssp             STTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECT-TSCEE---------EE-EC-----TTTCSCEEEEEECTTSCEE
T ss_pred             CcccccCceEEEEEcCCCeEEEEcCCCCCEEEEECC-CCcEE---------EE-ec-----CccCCCceEEEEeCCCCEE
Confidence            01345568899994 66666666543 889999994 33211         00 00     1123567899999999988


Q ss_pred             EEEeCCCeEEEEcCCCcceeecc--cccCCeEEEEEccCCCEEEEEecCCcEEEEeCCCCceeEEeeec--cCCeeeeec
Q psy12697        296 ATGSYDGYARIWTSDGSLKSTLG--QHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFH--SAPALDVDW  371 (602)
Q Consensus       296 ~~~~~dg~i~i~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~--~~~~~~~~~  371 (602)
                      ++...++.|.+|+.++.....+.  .+...+..++++++++.+++...++.|.+||. +++.+..+...  ...+..+++
T Consensus       136 v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~g~~~~p~~i~~  214 (286)
T 1q7f_A          136 VVECKVMRVIIFDQNGNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNY-EGQYLRQIGGEGITNYPIGVGI  214 (286)
T ss_dssp             EEETTTTEEEEECTTSCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEET-TCCEEEEESCTTTSCSEEEEEE
T ss_pred             EEECCCCEEEEEcCCCCEEEEeCCCCccCCcEEEEECCCCCEEEEECCCCEEEEEcC-CCCEEEEEccCCccCCCcEEEE
Confidence            88778899999998877666553  34456899999999997777778899999997 45555555433  256788999


Q ss_pred             cCCCeEEEee-CCC-eEEEEEcCCCceeeEeccCCC--CeEEEEECCCCCEEEEEECCCeEEEEeCCCC
Q psy12697        372 QSNTSFASCS-TDQ-HIHVCKLHSDKPVKSFEGHTN--EVNAIKWDPQGLLLASCSDDMTLKIWSLDKD  436 (602)
Q Consensus       372 ~~~~~~~~~~-~~~-~i~i~d~~~~~~~~~~~~~~~--~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~  436 (602)
                      .+++.++++. .++ .|.+|+. +++.+..+..+..  .+.+++++|+|+++++ +.|+.|++|++...
T Consensus       215 d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~~  281 (286)
T 1q7f_A          215 NSNGEILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQL  281 (286)
T ss_dssp             CTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESSCCSCEEEEEEETTTEEEEE-ETTTEEEEEECSCC
T ss_pred             CCCCCEEEEeCCCCEEEEEECC-CCCEEEEEcccCCCCcceeEEECCCCcEEEE-CCCCeEEEEEcccc
Confidence            8887766555 454 9999995 4566666655433  4789999999987776 67999999998653

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.77  E-value=6.4e-15  Score=148.64  Aligned_cols=319  Identities=10%  Similarity=0.065  Sum_probs=214.4

Q ss_pred             CCCCeEEEeeCCceEEEEecCCceeEEEeeccCceEEEEeCCCCCCCCCCCCccccccccccCCcceEeeCCCcceEEEE
Q psy12697        150 PDGKFLASGSFDKCVHIWSARTGQLVHSYKGTGGIFEVCWNSRGTPPNPPESMEVDASIEIPQSKATKLIGHESEVFICA  229 (602)
Q Consensus       150 ~d~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~  229 (602)
                      |++.++++...+++|.++|..+++.+..+..                                         ...+..+.
T Consensus       165 ~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~-----------------------------------------g~~p~~v~  203 (567)
T 1qks_A          165 LENLFSVTLRDAGQIALIDGSTYEIKTVLDT-----------------------------------------GYAVHISR  203 (567)
T ss_dssp             GGGEEEEEETTTTEEEEEETTTCCEEEEEEC-----------------------------------------SSCEEEEE
T ss_pred             CCceEEEEeCCCCeEEEEECCCCeEEEEEeC-----------------------------------------CCCccceE
Confidence            4456777788899999999999998866542                                         22456889


Q ss_pred             EcCCCCEEEEeeCCCcEEEEeCC--CCCCCCCccceEEEEEEecCCCcccCCCCceeEEeeC----CCCCeEEEEeCC-C
Q psy12697        230 WNPVKDFLASGSGDSTARIWDMT--DSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWN----NNGSFLATGSYD-G  302 (602)
Q Consensus       230 ~~~~~~~l~s~~~dg~i~iw~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~----~~~~~l~~~~~d-g  302 (602)
                      |+||++++++++.|+.|.+||+.  +.+..     .    .        .+.......++|+    |||++++++... +
T Consensus       204 ~SpDGr~lyv~~~dg~V~viD~~~~t~~~v-----~----~--------i~~G~~P~~ia~s~~~~pDGk~l~v~n~~~~  266 (567)
T 1qks_A          204 LSASGRYLFVIGRDGKVNMIDLWMKEPTTV-----A----E--------IKIGSEARSIETSKMEGWEDKYAIAGAYWPP  266 (567)
T ss_dssp             ECTTSCEEEEEETTSEEEEEETTSSSCCEE-----E----E--------EECCSEEEEEEECCSTTCTTTEEEEEEEETT
T ss_pred             ECCCCCEEEEEcCCCeEEEEECCCCCCcEe-----E----E--------EecCCCCceeEEccccCCCCCEEEEEEccCC
Confidence            99999999999999999999985  33211     0    0        0113456789999    699988877664 8


Q ss_pred             eEEEEcCC-Ccceeeccc----------ccC-CeEEEEEccCCCEEE-EEecCCcEEEEeCCCCceeEEeee-ccCCeee
Q psy12697        303 YARIWTSD-GSLKSTLGQ----------HKG-PIFALKWNKRGNYIL-SAGVDKTTIIWDAASGQCEQQFSF-HSAPALD  368 (602)
Q Consensus       303 ~i~i~~~~-~~~~~~~~~----------~~~-~i~~~~~~~~~~~l~-~~~~dg~i~~wd~~~~~~~~~~~~-~~~~~~~  368 (602)
                      .+.++|.. .+.+..+..          |.. .+..+..++++..++ ....+|.|.++|..+.+....... ......+
T Consensus       267 ~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d  346 (567)
T 1qks_A          267 QYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHD  346 (567)
T ss_dssp             EEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEE
T ss_pred             eEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeeeccccccC
Confidence            99999965 334333321          222 577888888866544 455679999999887653332222 2334567


Q ss_pred             eeccCCCeE--EEeeCCCeEEEEEcCCCceeeEecc-----CCCCeEEEEECCCCCEE-EEEE-CCCeEEEEeCCC----
Q psy12697        369 VDWQSNTSF--ASCSTDQHIHVCKLHSDKPVKSFEG-----HTNEVNAIKWDPQGLLL-ASCS-DDMTLKIWSLDK----  435 (602)
Q Consensus       369 ~~~~~~~~~--~~~~~~~~i~i~d~~~~~~~~~~~~-----~~~~i~~~~~~~~~~~l-~~~~-~dg~i~iwd~~~----  435 (602)
                      +.|++++.+  ++...++.|.++|+.+++.+..+..     |.+.-..+ ++|++..+ +++. .++.|.++|..+    
T Consensus       347 ~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~-~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~  425 (567)
T 1qks_A          347 GGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANF-VHPTFGPVWATSHMGDDSVALIGTDPEGHP  425 (567)
T ss_dssp             EEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCT
T ss_pred             ceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccceee-ECCCCCcEEEeCCCCCCeEEEecCCCCCCc
Confidence            789998763  3444678999999999987766543     32212122 68875544 4443 468999999887    


Q ss_pred             ---CeeeEeeccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeC-------CCeEE
Q psy12697        436 ---DNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGV-------DKTTI  505 (602)
Q Consensus       436 ---~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~-------dg~i~  505 (602)
                         .+.+.++....                                  ..-..+..+|++++|.+...       ...|.
T Consensus       426 ~~~~kvv~~i~~~g----------------------------------~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~  471 (567)
T 1qks_A          426 DNAWKILDSFPALG----------------------------------GGSLFIKTHPNSQYLYVDATLNPEAEISGSVA  471 (567)
T ss_dssp             TTBTSEEEEEECSC----------------------------------SCCCCEECCTTCSEEEEECTTCSSHHHHTCEE
T ss_pred             cccCEEEEEEecCC----------------------------------CCCEEEEeCCCCCeEEEecCCCCCcccCceEE
Confidence               33444433211                                  11133567889998887652       35899


Q ss_pred             EEeCCCC-----ce-eeeec--------ccCCCeeEeeecCCc-eEEEe-e----CCCcEEEeecCCCCceeeeec
Q psy12697        506 IWDAASG-----QC-EQQFS--------FHSAPALDVDWQSNT-SFASC-S----TDQHIHVCKLHSDKPVKSFEG  561 (602)
Q Consensus       506 iwd~~~~-----~~-~~~~~--------~~~~~v~~~~~s~~~-~l~~~-~----~d~~i~iw~~~~~~~~~~~~~  561 (602)
                      ++|+.+.     .. ...+.        .....+..+.|+|+| .+..+ .    .++.|.|+|.++++.+..++.
T Consensus       472 v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i~~  547 (567)
T 1qks_A          472 VFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLELKHVIKD  547 (567)
T ss_dssp             EEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTTEEEEEECC
T ss_pred             EEECCcccccccCCCcEEeccccccccCCCCcceEeeeECCCCCEEEEEeecCCCCCCcEEEEECCCceEEEEeCC
Confidence            9999877     21 12222        123468899999999 44433 2    379999999998888777764

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.76  E-value=4.3e-16  Score=149.89  Aligned_cols=256  Identities=12%  Similarity=0.086  Sum_probs=174.6

Q ss_pred             cceEEEEEcCCCCEEEEee---------CCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEeeCCCCC
Q psy12697        223 SEVFICAWNPVKDFLASGS---------GDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGS  293 (602)
Q Consensus       223 ~~v~~~~~~~~~~~l~s~~---------~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  293 (602)
                      ..+...++  ||+.++...         .++.|.+|++.+++..      .+               ..+..++|+|||+
T Consensus        15 ~~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~------~l---------------~~~~~~~~SpDg~   71 (347)
T 2gop_A           15 AYLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARR------FI---------------ENATMPRISPDGK   71 (347)
T ss_dssp             CEEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEE------EE---------------ESCEEEEECTTSS
T ss_pred             EEcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceE------Ec---------------ccCCCeEECCCCC
Confidence            34666777  888777642         2567899998875421      00               2478899999999


Q ss_pred             eEEEEeCC---C--eEEEEcCCCcceeecccccCCeEEEEEccCCCEEEEEecC--------------------------
Q psy12697        294 FLATGSYD---G--YARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVD--------------------------  342 (602)
Q Consensus       294 ~l~~~~~d---g--~i~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d--------------------------  342 (602)
                      .|+..+.+   +  .|.+|++.+.....+..+.. +..+.|+|+|+.|+.++.+                          
T Consensus        72 ~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  150 (347)
T 2gop_A           72 KIAFMRANEEKKVSEIWVADLETLSSKKILEAKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGE  150 (347)
T ss_dssp             EEEEEEEETTTTEEEEEEEETTTTEEEEEEEESE-EEEEEECTTSSEEEEEEECCCC---------CCCC---------C
T ss_pred             EEEEEEeccCCCcceEEEEECCCCceEEEEcCCC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCc
Confidence            99887754   3  47788887655444444444 9999999999999887643                          


Q ss_pred             -CcEEEEeCCCCceeEEeeeccCCeeeeeccCCCeEEEeeCC---------CeEEEEEcCCCceeeEeccCCCCeEEEEE
Q psy12697        343 -KTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTSFASCSTD---------QHIHVCKLHSDKPVKSFEGHTNEVNAIKW  412 (602)
Q Consensus       343 -g~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~i~i~d~~~~~~~~~~~~~~~~i~~~~~  412 (602)
                       ..|.+||+.+++.+..+.. . .+..+.|+|++.++++..+         ..|.++|  +++ ...+..+ ..+..+  
T Consensus       151 ~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~spdg~~~~~~~~~~~~~~~~~~~l~~~d--~~~-~~~l~~~-~~~~~~--  222 (347)
T 2gop_A          151 KTTFWIFDTESEEVIEEFEK-P-RFSSGIWHRDKIVVNVPHREIIPQYFKFWDIYIWE--DGK-EEKMFEK-VSFYAV--  222 (347)
T ss_dssp             EEEEEEEETTTTEEEEEEEE-E-TTCEEEEETTEEEEEEECCCSSCCSSCCEEEEEEE--TTE-EEEEEEE-ESEEEE--
T ss_pred             cceEEEEECCCCeEEeeecC-C-CcccccCCCCeEEEEEecccccccccccccEEEeC--CCc-eEEeccC-cceeeE--
Confidence             5789999998887455544 3 7888999999944444333         2455555  444 3444444 455544  


Q ss_pred             CCCCCEEEEEECC--------CeEEEEeCCCCeeeEeeccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeE
Q psy12697        413 DPQGLLLASCSDD--------MTLKIWSLDKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIF  484 (602)
Q Consensus       413 ~~~~~~l~~~~~d--------g~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  484 (602)
                      +|+|+.|+.++.+        ..|.+||  +++......                                  .+...+.
T Consensus       223 spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~----------------------------------~~~~~~~  266 (347)
T 2gop_A          223 DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILD----------------------------------EVDRGVG  266 (347)
T ss_dssp             EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESST----------------------------------TCCSEEE
T ss_pred             CCCCCEEEEEEccccCCccccceEEEEC--CCceEeccc----------------------------------cCCcccC
Confidence            9999999888754        3677777  433322211                                  2334555


Q ss_pred             E-EEEccCCCEEEEEeCCCeEEEEeCCCCceeeeecccCCCeeEeeecCCceEEEeeCCCcE-EEeecC
Q psy12697        485 A-LKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTSFASCSTDQHI-HVCKLH  551 (602)
Q Consensus       485 ~-i~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~l~~~~~d~~i-~iw~~~  551 (602)
                      . +.|+ |+ ++++++.++.+++| +.+++..... .+...|.+++|+| ..+++++.++.. .+|.+.
T Consensus       267 ~~~~~s-dg-~~~~~~~~~~~~l~-~~~g~~~~~~-~~~~~v~~~~~s~-~~~~~~~~~~~~~~l~~~~  330 (347)
T 2gop_A          267 QAKIKD-GK-VYFTLFEEGSVNLY-IWDGEIKPIA-KGRHWIMGFDVDE-IVVYLKETATRLRELFTWD  330 (347)
T ss_dssp             EEEEET-TE-EEEEEEETTEEEEE-EESSSEEEEE-CSSSEEEEEEESS-SEEEEEECSSSCCEEEEES
T ss_pred             CccEEc-Cc-EEEEEecCCcEEEE-EcCCceEEEe-cCCCeEEeeeeeC-cEEEEEcCCCChHHheEeC
Confidence            4 7888 88 88999999999999 8866654443 4577899999999 866666666654 777765

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.76  E-value=5.9e-16  Score=145.10  Aligned_cols=249  Identities=12%  Similarity=0.078  Sum_probs=180.8

Q ss_pred             ceeeeeeeccCCceEEEEECCCCC-eEEEeeCCceEEEEecCCceeEEEeeccCceEEEEeCCCCCCCCCCCCccccccc
Q psy12697        130 GECLNTLTRHTEPVYSVAFSPDGK-FLASGSFDKCVHIWSARTGQLVHSYKGTGGIFEVCWNSRGTPPNPPESMEVDASI  208 (602)
Q Consensus       130 ~~~~~~l~~h~~~V~~~~~s~d~~-~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (602)
                      +..+..+..+.....+++|+|+|+ +++++..++.|..||..++  ...                               
T Consensus        17 ~~~~~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~-------------------------------   63 (296)
T 3e5z_A           17 GAEARRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSP-------------------------------   63 (296)
T ss_dssp             TCCCEEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEE-------------------------------
T ss_pred             CCcEEEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEE-------------------------------
Confidence            344556666777889999999998 7888888999999999876  322                               


Q ss_pred             cccCCcceEeeCCCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEee
Q psy12697        209 EIPQSKATKLIGHESEVFICAWNPVKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDW  288 (602)
Q Consensus       209 ~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  288 (602)
                               +..+...+.+++++|+++++++...++.|.+||..+++...      .....      .......+..+++
T Consensus        64 ---------~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~~~------~~~~~------~~~~~~~~~~i~~  122 (296)
T 3e5z_A           64 ---------EMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREPGGEWES------IADSF------EGKKLNSPNDVCL  122 (296)
T ss_dssp             ---------EESSCSSEEEEEECTTCCEEEEETTTTEEEEECSTTCCEEE------EECEE------TTEECCCCCCEEE
T ss_pred             ---------EECCCCCcceeeECCCCcEEEEecCCCeEEEEcCCCCcEEE------Eeecc------CCCCCCCCCCEEE
Confidence                     22355678899999999988887778899999987664211      10000      0011235678999


Q ss_pred             CCCCCeEEE----Ee-------------CCCeEEEEcCCCcceeecccccCCeEEEEEccCCCEEEEEecCCcEEEEeCC
Q psy12697        289 NNNGSFLAT----GS-------------YDGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAA  351 (602)
Q Consensus       289 ~~~~~~l~~----~~-------------~dg~i~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~  351 (602)
                      +|+|+++++    |+             ..+.|..++..+. ...+..+......++|+|+++.+++.+.++.|.+|++.
T Consensus       123 d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~g~-~~~~~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~  201 (296)
T 3e5z_A          123 APDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPDGT-LSAPIRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLN  201 (296)
T ss_dssp             CTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTTSC-EEEEECCCSSEEEEEECTTSCEEEEETTTTEEEEEEEC
T ss_pred             CCCCCEEEECCccccccccccccccccCCCcEEEEECCCCC-EEEeecCCCCCccEEECCCCCEEEEeCCCCeEEEEEEC
Confidence            999998887    33             1356777776644 33444566678899999999998777778999999987


Q ss_pred             -CCce---eEEeeeccCCeeeeeccCCCeEEEeeCCCeEEEEEcCCCceeeEeccCCCCeEEEEE-CCCCCEEEEEECCC
Q psy12697        352 -SGQC---EQQFSFHSAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKW-DPQGLLLASCSDDM  426 (602)
Q Consensus       352 -~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~-~~~~~~l~~~~~dg  426 (602)
                       +++.   ...+......+..+++.+++.+.++. ++.|.+|+.. ++.+..+..+.. +.+++| +|+++.|++++.++
T Consensus       202 ~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~-~~~v~~~~~~-g~~~~~~~~~~~-~~~~~f~~~d~~~L~v~t~~~  278 (296)
T 3e5z_A          202 ARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA-GDGVHVLTPD-GDELGRVLTPQT-TSNLCFGGPEGRTLYMTVSTE  278 (296)
T ss_dssp             SSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE-TTEEEEECTT-SCEEEEEECSSC-CCEEEEESTTSCEEEEEETTE
T ss_pred             CCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc-CCeEEEECCC-CCEEEEEECCCC-ceeEEEECCCCCEEEEEcCCe
Confidence             5554   22332344456788899998888777 8999999986 777777877777 899999 68999999988864


Q ss_pred             eEEEEeCCCCe
Q psy12697        427 TLKIWSLDKDN  437 (602)
Q Consensus       427 ~i~iwd~~~~~  437 (602)
                       +.-++..+.+
T Consensus       279 -l~~~~~~~~~  288 (296)
T 3e5z_A          279 -FWSIETNVRG  288 (296)
T ss_dssp             -EEEEECSCCB
T ss_pred             -EEEEEccccc
Confidence             5555655543

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.74  E-value=1.3e-15  Score=146.53  Aligned_cols=250  Identities=10%  Similarity=0.113  Sum_probs=172.2

Q ss_pred             CceeEEeeCCCCCeEEEEe---------CCCeEEEEcCCCcceeecccccCCeEEEEEccCCCEEEEEecC---C--cEE
Q psy12697        281 KDVTSLDWNNNGSFLATGS---------YDGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVD---K--TTI  346 (602)
Q Consensus       281 ~~i~~~~~~~~~~~l~~~~---------~dg~i~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---g--~i~  346 (602)
                      ..+...++  ||+.++...         .++.|.+|++.+.....+    ..+..++|+|||++|+.++.+   +  .|.
T Consensus        15 ~~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l----~~~~~~~~SpDg~~la~~~~~~~~~~~~l~   88 (347)
T 2gop_A           15 AYLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARRFI----ENATMPRISPDGKKIAFMRANEEKKVSEIW   88 (347)
T ss_dssp             CEEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEEE----ESCEEEEECTTSSEEEEEEEETTTTEEEEE
T ss_pred             EEcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceEEc----ccCCCeEECCCCCEEEEEEeccCCCcceEE
Confidence            45677777  888887653         256799999886555444    568899999999999987754   2  388


Q ss_pred             EEeCCCCceeEEeeeccCCeeeeeccCCCe-EEEeeC---------------------------CCeEEEEEcCCCceee
Q psy12697        347 IWDAASGQCEQQFSFHSAPALDVDWQSNTS-FASCST---------------------------DQHIHVCKLHSDKPVK  398 (602)
Q Consensus       347 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~---------------------------~~~i~i~d~~~~~~~~  398 (602)
                      +||+.+++.........  +..+.|+|++. ++.++.                           ...|++||+.+++.+.
T Consensus        89 ~~~~~~g~~~~l~~~~~--~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~  166 (347)
T 2gop_A           89 VADLETLSSKKILEAKN--IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIE  166 (347)
T ss_dssp             EEETTTTEEEEEEEESE--EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEE
T ss_pred             EEECCCCceEEEEcCCC--ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEe
Confidence            88998887665554443  88999999865 555542                           2579999999887645


Q ss_pred             EeccCCCCeEEEEECCCCCEEEEEECCC-------eEEEEeCCCCeeeEeeccccccEEEEEECCCCCCCCCCCcceeee
Q psy12697        399 SFEGHTNEVNAIKWDPQGLLLASCSDDM-------TLKIWSLDKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFI  471 (602)
Q Consensus       399 ~~~~~~~~i~~~~~~~~~~~l~~~~~dg-------~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~  471 (602)
                      .+.. . .+..++|+|+| +++++..++       ...||.+++++. ..+..                           
T Consensus       167 ~l~~-~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~~~-~~l~~---------------------------  215 (347)
T 2gop_A          167 EFEK-P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDGKE-EKMFE---------------------------  215 (347)
T ss_dssp             EEEE-E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETTEE-EEEEE---------------------------
T ss_pred             eecC-C-CcccccCCCCe-EEEEEecccccccccccccEEEeCCCce-EEecc---------------------------
Confidence            5544 3 78899999999 877776542       334444333332 22211                           


Q ss_pred             eeeccCCccCCeEEEEEccCCCEEEEEeCC--------CeEEEEeCCCCceeeeecccCCCeeE-eeecCCceEEEeeCC
Q psy12697        472 LKSTLGQHKGPIFALKWNKRGNYILSAGVD--------KTTIIWDAASGQCEQQFSFHSAPALD-VDWQSNTSFASCSTD  542 (602)
Q Consensus       472 ~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d--------g~i~iwd~~~~~~~~~~~~~~~~v~~-~~~s~~~~l~~~~~d  542 (602)
                             + ..+..+  +|||++|+.++.+        ..|.+||  +++.......+...+.. +.|+ |+.+++++.+
T Consensus       216 -------~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~~~~~~~~~~~s-dg~~~~~~~~  282 (347)
T 2gop_A          216 -------K-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILDEVDRGVGQAKIKD-GKVYFTLFEE  282 (347)
T ss_dssp             -------E-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESSTTCCSEEEEEEEET-TEEEEEEEET
T ss_pred             -------C-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CCceEeccccCCcccCCccEEc-CcEEEEEecC
Confidence                   1 122233  7899988877754        4688888  66666656666777886 8999 8877788899


Q ss_pred             CcEEEeecCCCCceeeeecccccceEEEEecCCcEEEEEECCCCCeEEEeccCCe
Q psy12697        543 QHIHVCKLHSDKPVKSFEGHTTGQLVHSYKGTGGIFEVCWNSRGDKVGASASDGS  597 (602)
Q Consensus       543 ~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~  597 (602)
                      +.+++| +.+++....            ....+.|.+++|+|  .++++++.++.
T Consensus       283 ~~~~l~-~~~g~~~~~------------~~~~~~v~~~~~s~--~~~~~~~~~~~  322 (347)
T 2gop_A          283 GSVNLY-IWDGEIKPI------------AKGRHWIMGFDVDE--IVVYLKETATR  322 (347)
T ss_dssp             TEEEEE-EESSSEEEE------------ECSSSEEEEEEESS--SEEEEEECSSS
T ss_pred             CcEEEE-EcCCceEEE------------ecCCCeEEeeeeeC--cEEEEEcCCCC
Confidence            999999 864433221            22246689999999  67777776664

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.74  E-value=2.9e-15  Score=140.37  Aligned_cols=235  Identities=12%  Similarity=0.054  Sum_probs=165.9

Q ss_pred             eecccccCCeEEEEEccCCC-EEEEEecCCcEEEEeCCCCceeEEeeeccCCeeeeeccCCCeEEEeeC-CCeEEEEEcC
Q psy12697        315 STLGQHKGPIFALKWNKRGN-YILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTSFASCST-DQHIHVCKLH  392 (602)
Q Consensus       315 ~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~i~d~~  392 (602)
                      ..+..+.....+++|+|+++ .++++..++.|..||..++  ...+..+...+..+++.+++.++++.. ++.|.+||..
T Consensus        21 ~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~   98 (296)
T 3e5z_A           21 RRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREP   98 (296)
T ss_dssp             EEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECST
T ss_pred             EEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCC
Confidence            34444556678999999998 6777888999999999887  566666677788999999887776665 5899999998


Q ss_pred             CCceeeEeccC----CCCeEEEEECCCCCEEEEEEC-----------------CCeEEEEeCCCCeeeEeeccccccEEE
Q psy12697        393 SDKPVKSFEGH----TNEVNAIKWDPQGLLLASCSD-----------------DMTLKIWSLDKDNCVHDLQAHNKEIYT  451 (602)
Q Consensus       393 ~~~~~~~~~~~----~~~i~~~~~~~~~~~l~~~~~-----------------dg~i~iwd~~~~~~~~~~~~~~~~i~~  451 (602)
                      +++........    ...+..++++|+|+++++.+.                 .+.|..++.. ++. ..+.        
T Consensus        99 ~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~-~~~~--------  168 (296)
T 3e5z_A           99 GGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTL-SAPI--------  168 (296)
T ss_dssp             TCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCE-EEEE--------
T ss_pred             CCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCE-EEee--------
Confidence            87754333221    234678999999998887431                 2345555443 221 1111        


Q ss_pred             EEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCCCeEEEEeCC-CCce---eeeecccCCCeeE
Q psy12697        452 IKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAA-SGQC---EQQFSFHSAPALD  527 (602)
Q Consensus       452 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~~-~~~~---~~~~~~~~~~v~~  527 (602)
                                                .+......++|+|+|+++++.+.++.|.+||+. +++.   ...+..+...+..
T Consensus       169 --------------------------~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~  222 (296)
T 3e5z_A          169 --------------------------RDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDG  222 (296)
T ss_dssp             --------------------------CCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCS
T ss_pred             --------------------------cCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCe
Confidence                                      123345678899999988777778999999986 5554   2333334556788


Q ss_pred             eeecCCceEEEeeCCCcEEEeecCCCCceeeeecccccceEEEEecCCcEEEEEE-CCCCCeEEEeccCCeEEee
Q psy12697        528 VDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEGHTTGQLVHSYKGTGGIFEVCW-NSRGDKVGASASDGSVFKN  601 (602)
Q Consensus       528 ~~~s~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~-spdg~~l~~~~~dg~v~i~  601 (602)
                      ++++++|.|.++. ++.|.+|+.. ++.+..+..+            ..+.+++| +||++.|++++.++..+++
T Consensus       223 i~~d~~G~l~v~~-~~~v~~~~~~-g~~~~~~~~~------------~~~~~~~f~~~d~~~L~v~t~~~l~~~~  283 (296)
T 3e5z_A          223 LRVDAGGLIWASA-GDGVHVLTPD-GDELGRVLTP------------QTTSNLCFGGPEGRTLYMTVSTEFWSIE  283 (296)
T ss_dssp             EEEBTTSCEEEEE-TTEEEEECTT-SCEEEEEECS------------SCCCEEEEESTTSCEEEEEETTEEEEEE
T ss_pred             EEECCCCCEEEEc-CCeEEEECCC-CCEEEEEECC------------CCceeEEEECCCCCEEEEEcCCeEEEEE
Confidence            9999999444444 8899999964 4444333322            22888999 6999999999999988875

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.73  E-value=9.3e-16  Score=161.62  Aligned_cols=243  Identities=9%  Similarity=0.007  Sum_probs=165.2

Q ss_pred             CCCcceEEEEEcCCCCEEEE-----eeCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEeeCCCCCe
Q psy12697        220 GHESEVFICAWNPVKDFLAS-----GSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSF  294 (602)
Q Consensus       220 ~h~~~v~~~~~~~~~~~l~s-----~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  294 (602)
                      +|...+..++|||||++|+.     |+.+..|++||+.+++.......               . ......++|+|||+.
T Consensus       118 ~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~~---------------~-~~~~~~~~wspDg~~  181 (695)
T 2bkl_A          118 DGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDVI---------------E-GGKYATPKWTPDSKG  181 (695)
T ss_dssp             SSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSCCB---------------S-CCTTCCCEECTTSSE
T ss_pred             CCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCccc---------------C-cccccceEEecCCCE
Confidence            46667899999999999983     44457899999998764310000               0 111268999999999


Q ss_pred             EEEEeCCCe-------------EEEEcCCCcc-----eeecccccCCeEEEEEccCCCEEEEEecCC----cEEEEeCCC
Q psy12697        295 LATGSYDGY-------------ARIWTSDGSL-----KSTLGQHKGPIFALKWNKRGNYILSAGVDK----TTIIWDAAS  352 (602)
Q Consensus       295 l~~~~~dg~-------------i~i~~~~~~~-----~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg----~i~~wd~~~  352 (602)
                      |+.++.+..             |++|++.+..     +.....+...+..+.|+|||++|+.++.++    .|.+|+..+
T Consensus       182 l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~  261 (695)
T 2bkl_A          182 FYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGE  261 (695)
T ss_dssp             EEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTC
T ss_pred             EEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCC
Confidence            999988765             9999987432     223334556789999999999998877666    677777665


Q ss_pred             CceeEEeeeccCCeeeeeccCCCeEEEeeC----CCeEEEEEcCCCce--eeEeccC--CCCeEEEEECCCCCEEEEEEC
Q psy12697        353 GQCEQQFSFHSAPALDVDWQSNTSFASCST----DQHIHVCKLHSDKP--VKSFEGH--TNEVNAIKWDPQGLLLASCSD  424 (602)
Q Consensus       353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~i~i~d~~~~~~--~~~~~~~--~~~i~~~~~~~~~~~l~~~~~  424 (602)
                      ++. ..+..+........+.+++ ++..+.    ++.|.+||+.+++.  ...+..+  ...+..++++ ++.++++...
T Consensus       262 ~~~-~~l~~~~~~~~~~~~~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~  338 (695)
T 2bkl_A          262 KDF-RLLVKGVGAKYEVHAWKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLK  338 (695)
T ss_dssp             SSC-EEEEECSSCCEEEEEETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEE
T ss_pred             Cce-EEeecCCCceEEEEecCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEE
Confidence            543 3444444455555565555 555554    57899999987753  2333333  4458888888 7788899999


Q ss_pred             CCeEEEEeCC-CCeeeEeeccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEE----e
Q psy12697        425 DMTLKIWSLD-KDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSA----G  499 (602)
Q Consensus       425 dg~i~iwd~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~----~  499 (602)
                      |+..+||.+. +++....+..+                                 ..+.+..+.++|+++.++..    .
T Consensus       339 dg~~~l~~~~~~g~~~~~l~~~---------------------------------~~~~v~~~~~s~d~~~l~~~~ss~~  385 (695)
T 2bkl_A          339 DATSEVRVATLKGKPVRTVQLP---------------------------------GVGAASNLMGLEDLDDAYYVFTSFT  385 (695)
T ss_dssp             TTEEEEEEEETTCCEEEECCCS---------------------------------SSSEECCCBSCTTCSEEEEEEEETT
T ss_pred             CCEEEEEEEeCCCCeeEEecCC---------------------------------CCeEEEEeecCCCCCEEEEEEcCCC
Confidence            9988888654 33333333221                                 13345566677788766633    3


Q ss_pred             CCCeEEEEeCCCCce
Q psy12697        500 VDKTTIIWDAASGQC  514 (602)
Q Consensus       500 ~dg~i~iwd~~~~~~  514 (602)
                      ..++|++||+.+++.
T Consensus       386 ~P~~v~~~d~~~g~~  400 (695)
T 2bkl_A          386 TPRQIYKTSVSTGKS  400 (695)
T ss_dssp             EEEEEEEEETTTCCE
T ss_pred             CCCEEEEEECCCCcE
Confidence            357899999998874

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.72  E-value=1.7e-14  Score=137.74  Aligned_cols=250  Identities=12%  Similarity=0.112  Sum_probs=176.6

Q ss_pred             ccceeeeecccceeeeeeeccCCceEEEEECCCCCeEEEeeCCceEEEEecCCceeEEEeeccCceEEEEeCCCCCCCCC
Q psy12697        119 RLTLPLWDVERGECLNTLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKGTGGIFEVCWNSRGTPPNP  198 (602)
Q Consensus       119 ~~~i~vwd~~~~~~~~~l~~h~~~V~~~~~s~d~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (602)
                      +..++.|   .++....+..+...+.+++|+|+|++++++..++.|.+||..+++.....                    
T Consensus        26 ~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~--------------------   82 (333)
T 2dg1_A           26 ESELQTI---TAEPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPF--------------------   82 (333)
T ss_dssp             GGGSCEE---ECEEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEE--------------------
T ss_pred             cccCccc---ccceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEe--------------------
Confidence            4577888   56677788888888999999999998888889999999999887754321                    


Q ss_pred             CCCccccccccccCCcceEeeCCCcceEEEEEcCCCCEEEEeeCC----CcEEEEeCCCCCCCCCccceEEEEEEecCCC
Q psy12697        199 PESMEVDASIEIPQSKATKLIGHESEVFICAWNPVKDFLASGSGD----STARIWDMTDSTKKDPKELQIVLRHCISKGG  274 (602)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~d----g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~  274 (602)
                                          ..+...+.+++|+|+++++++...+    +.|.+||..++....      .    ...  
T Consensus        83 --------------------~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~------~----~~~--  130 (333)
T 2dg1_A           83 --------------------VSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQD------I----IED--  130 (333)
T ss_dssp             --------------------ECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEE------E----ECS--
T ss_pred             --------------------eCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEE------E----Ecc--
Confidence                                1245679999999999988877666    689999987654310      0    000  


Q ss_pred             cccCCCCceeEEeeCCCCCeEEEEeC------CCeEEEEcCCCcceeecccccCCeEEEEEccCCCEEEEE-ecCCcEEE
Q psy12697        275 TEVPSNKDVTSLDWNNNGSFLATGSY------DGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSA-GVDKTTII  347 (602)
Q Consensus       275 ~~~~~~~~i~~~~~~~~~~~l~~~~~------dg~i~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~~  347 (602)
                        ......+.+++++|+|+++++...      .+.|..++.++.....+......+..++|+|+++.|+.+ +.++.|.+
T Consensus       131 --~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~  208 (333)
T 2dg1_A          131 --LSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTETTANRLHR  208 (333)
T ss_dssp             --SSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEE
T ss_pred             --CccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEeecCCCcccceEECCCCCEEEEEeCCCCeEEE
Confidence              012356899999999987776653      356777777654444443444568899999999866544 56789999


Q ss_pred             EeCCC-CceeEEe------eec-cCCeeeeeccCCCeEEEee-CCCeEEEEEcCCCceeeEeccCCC------CeEEEEE
Q psy12697        348 WDAAS-GQCEQQF------SFH-SAPALDVDWQSNTSFASCS-TDQHIHVCKLHSDKPVKSFEGHTN------EVNAIKW  412 (602)
Q Consensus       348 wd~~~-~~~~~~~------~~~-~~~~~~~~~~~~~~~~~~~-~~~~i~i~d~~~~~~~~~~~~~~~------~i~~~~~  412 (602)
                      ||..+ +.....+      ... ...+..+++.+++.+.++. .++.|.+||. +++.+..+..+..      .+.+++|
T Consensus       209 ~d~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~v~~~d~-~g~~~~~~~~~~~~~g~~~~~~~~~~  287 (333)
T 2dg1_A          209 IALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQF  287 (333)
T ss_dssp             EEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEE
T ss_pred             EEecCCCcCcccccceEEEecCCCCCCCceEECCCCCEEEEEcCCCEEEEECC-CCCEEEEEEcCCCccccccCcceEEE
Confidence            99864 3332211      111 1356678888887766554 5689999998 4666666654433      6899999


Q ss_pred             CCCCCEEEEEECCC
Q psy12697        413 DPQGLLLASCSDDM  426 (602)
Q Consensus       413 ~~~~~~l~~~~~dg  426 (602)
                      +|+++.|+.++.++
T Consensus       288 ~~dg~~L~v~~~~g  301 (333)
T 2dg1_A          288 IPGTNQLIICSNDI  301 (333)
T ss_dssp             CTTSCEEEEEEECG
T ss_pred             CCCCCEEEEEeCcc
Confidence            99987777666553

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.71  E-value=2.6e-15  Score=158.71  Aligned_cols=246  Identities=10%  Similarity=0.001  Sum_probs=173.1

Q ss_pred             ccCCceEEEEECCCCCeEEEeeCCc-----eEEEEecCCceeEEEeeccCceEEEEeCCCCCCCCCCCCccccccccccC
Q psy12697        138 RHTEPVYSVAFSPDGKFLASGSFDK-----CVHIWSARTGQLVHSYKGTGGIFEVCWNSRGTPPNPPESMEVDASIEIPQ  212 (602)
Q Consensus       138 ~h~~~V~~~~~s~d~~~l~s~~~d~-----~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  212 (602)
                      +|...+..++|||||++||.++.++     .|++||+.+|+.+....                                 
T Consensus       122 ~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~---------------------------------  168 (710)
T 2xdw_A          122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVL---------------------------------  168 (710)
T ss_dssp             TSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEE---------------------------------
T ss_pred             CCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccc---------------------------------
Confidence            3555789999999999999776533     89999999998764211                                 


Q ss_pred             CcceEeeCCCcceEEEEEcCCCCEEEEeeCCCc----------------EEEEeCCCCCCCCCccceEEEEEEecCCCcc
Q psy12697        213 SKATKLIGHESEVFICAWNPVKDFLASGSGDST----------------ARIWDMTDSTKKDPKELQIVLRHCISKGGTE  276 (602)
Q Consensus       213 ~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~----------------i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (602)
                              ....+..++|+||++.|+.++.++.                |.+|++.++.....    ...        ..
T Consensus       169 --------~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~----~v~--------~~  228 (710)
T 2xdw_A          169 --------ERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDI----LCA--------EF  228 (710)
T ss_dssp             --------EEECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCE----EEE--------CC
T ss_pred             --------cCcccceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccce----EEe--------cc
Confidence                    1112567899999999999888766                99999976542110    000        00


Q ss_pred             cCCCCceeEEeeCCCCCeEEEEeC-----CCeEEEEcCCC------c--ceeecccccCCeEEEEEccCCCEEEEEecC-
Q psy12697        277 VPSNKDVTSLDWNNNGSFLATGSY-----DGYARIWTSDG------S--LKSTLGQHKGPIFALKWNKRGNYILSAGVD-  342 (602)
Q Consensus       277 ~~~~~~i~~~~~~~~~~~l~~~~~-----dg~i~i~~~~~------~--~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-  342 (602)
                      ..+...+..+.|+|||++|+.++.     +..|.+||+.+      .  ....+..+...+.. .|+|+|+.|+..+.. 
T Consensus       229 ~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~  307 (710)
T 2xdw_A          229 PDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRH  307 (710)
T ss_dssp             TTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEE-EEEEETTEEEEEECTT
T ss_pred             CCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCCCCcEEE-EEeccCCEEEEEECCC
Confidence            112344778999999999988765     56899999864      2  34555556655554 488999988776653 


Q ss_pred             ---CcEEEEeCCCCce--eEEeeeccC--CeeeeeccCCCe-EEEeeCCC--eEEEEEcCCCceeeEeccCCCCeEEEEE
Q psy12697        343 ---KTTIIWDAASGQC--EQQFSFHSA--PALDVDWQSNTS-FASCSTDQ--HIHVCKLHSDKPVKSFEGHTNEVNAIKW  412 (602)
Q Consensus       343 ---g~i~~wd~~~~~~--~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~--~i~i~d~~~~~~~~~~~~~~~~i~~~~~  412 (602)
                         +.|.+||+.++..  ...+..+..  .+..+.|++++. +++...++  .|++|++.+++.+..+..+...+..+++
T Consensus       308 ~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g~~~~~l~~~~~~v~~~~~  387 (710)
T 2xdw_A          308 SPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSG  387 (710)
T ss_dssp             CTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCCEEEEECCCSSEEEEEEC
T ss_pred             CCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCCCEEEecCCCCceEEEEec
Confidence               3699999987742  233433333  567788885554 55666676  4667788778877888878788999999


Q ss_pred             CCCCCEEEEE-E---CCCeEEEEeCCCCe
Q psy12697        413 DPQGLLLASC-S---DDMTLKIWSLDKDN  437 (602)
Q Consensus       413 ~~~~~~l~~~-~---~dg~i~iwd~~~~~  437 (602)
                      +|+++.++.. +   ..+.|.+||+.+++
T Consensus       388 s~d~~~l~~~~ss~~~P~~i~~~d~~tg~  416 (710)
T 2xdw_A          388 QKKDTEIFYQFTSFLSPGIIYHCDLTKEE  416 (710)
T ss_dssp             CTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred             CCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence            9998766644 2   34789999998766

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.71  E-value=2.9e-13  Score=126.99  Aligned_cols=271  Identities=7%  Similarity=0.005  Sum_probs=188.4

Q ss_pred             CceeEEeeCCCCCeEEEEeCCCeEEEEcCCCcceeec-ccccCCeEEEEEccCCCEEEEEecCCcEEEEeCCCCceeEEe
Q psy12697        281 KDVTSLDWNNNGSFLATGSYDGYARIWTSDGSLKSTL-GQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQF  359 (602)
Q Consensus       281 ~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~  359 (602)
                      ..+.++++.++|+++++...++.|..|+..+...... ..+...+..++++++++.+++...++.|..||.. ++. ..+
T Consensus        15 ~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~-~~~   92 (299)
T 2z2n_A           15 TGPYGITVSDKGKVWITQHKANMISCINLDGKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK-GII-KEY   92 (299)
T ss_dssp             CCEEEEEECTTSCEEEEETTTTEEEEECTTCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCE-EEE
T ss_pred             CCccceEECCCCCEEEEecCCCcEEEEcCCCCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCC-CcE-EEE
Confidence            5689999999999777766688999999884433221 2345678999999999987777768889999976 332 223


Q ss_pred             e--eccCCeeeeeccCCCeEEEee-CCCeEEEEEcCCCceee-EeccCCCCeEEEEECCCCCEEEEEECCCeEEEEeCCC
Q psy12697        360 S--FHSAPALDVDWQSNTSFASCS-TDQHIHVCKLHSDKPVK-SFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDK  435 (602)
Q Consensus       360 ~--~~~~~~~~~~~~~~~~~~~~~-~~~~i~i~d~~~~~~~~-~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~  435 (602)
                      .  .....+..+.+.+++.+.++. .++.|..||. +++... ....+...+..++++++|+++++...++.|..||. +
T Consensus        93 ~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~  170 (299)
T 2z2n_A           93 TLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFTENQNNAIGRITE-S  170 (299)
T ss_dssp             ECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-T
T ss_pred             eCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-C
Confidence            2  234467888888877766654 5789999998 554332 22334567899999999988887777789999998 5


Q ss_pred             CeeeEeeccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCcee
Q psy12697        436 DNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCE  515 (602)
Q Consensus       436 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~~~~~~~  515 (602)
                      ++.... ..                                ......+..++++++|++.++...++.|.+||. +++..
T Consensus       171 g~~~~~-~~--------------------------------~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~  216 (299)
T 2z2n_A          171 GDITEF-KI--------------------------------PTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEIT  216 (299)
T ss_dssp             CCEEEE-EC--------------------------------SSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEE
T ss_pred             CcEEEe-eC--------------------------------CCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcEE
Confidence            543221 00                                012234667888889887777767889999999 66644


Q ss_pred             ee-ecccCCCeeEeeecCCc-eEEEeeCCCcEEEeecCCCCceeeeecccccceEEEEecCCcEEEEEECCCCCeEEEec
Q psy12697        516 QQ-FSFHSAPALDVDWQSNT-SFASCSTDQHIHVCKLHSDKPVKSFEGHTTGQLVHSYKGTGGIFEVCWNSRGDKVGASA  593 (602)
Q Consensus       516 ~~-~~~~~~~v~~~~~s~~~-~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~  593 (602)
                      .. ...+...+.+++++++| .+++...++.|..||. +++ +..+...         .....+.++++ ++|.+.++..
T Consensus       217 ~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~-~~~~~~~---------~~~~~~~~i~~-~~g~l~v~~~  284 (299)
T 2z2n_A          217 EFKIPTPNARPHAITAGAGIDLWFTEWGANKIGRLTS-NNI-IEEYPIQ---------IKSAEPHGICF-DGETIWFAME  284 (299)
T ss_dssp             EEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEET-TTE-EEEEECS---------SSSCCEEEEEE-CSSCEEEEET
T ss_pred             EEECCCCCCCceeEEECCCCCEEEeccCCceEEEECC-CCc-eEEEeCC---------CCCCccceEEe-cCCCEEEEec
Confidence            32 23345678899999999 5555557789999997 332 2222111         01256889999 9998877766


Q ss_pred             cCCeEEee
Q psy12697        594 SDGSVFKN  601 (602)
Q Consensus       594 ~dg~v~i~  601 (602)
                      .++.++++
T Consensus       285 ~~~l~~~~  292 (299)
T 2z2n_A          285 CDKIGKLT  292 (299)
T ss_dssp             TTEEEEEE
T ss_pred             CCcEEEEE
Confidence            67776664

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.70  E-value=8.3e-15  Score=154.86  Aligned_cols=241  Identities=11%  Similarity=0.088  Sum_probs=164.9

Q ss_pred             CCcceEEEEEcCCCCEEEEeeCCC-----cEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEeeCCCCCeE
Q psy12697        221 HESEVFICAWNPVKDFLASGSGDS-----TARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFL  295 (602)
Q Consensus       221 h~~~v~~~~~~~~~~~l~s~~~dg-----~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l  295 (602)
                      |...+..++|||||++|+.+..++     .|++||+.+++...     ....            ...+..++|+|||+.|
T Consensus       123 ~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~-----~~~~------------~~~~~~~~wspDg~~l  185 (710)
T 2xdw_A          123 GTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELP-----DVLE------------RVKFSCMAWTHDGKGM  185 (710)
T ss_dssp             SCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEE-----EEEE------------EECSCCEEECTTSSEE
T ss_pred             CCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCc-----cccc------------CcccceEEEEeCCCEE
Confidence            445688999999999998776543     89999998875321     1111            1226789999999999


Q ss_pred             EEEeCCCe----------------EEEEcCCCcc---eee--cccccCCeEEEEEccCCCEEEEEec-----CCcEEEEe
Q psy12697        296 ATGSYDGY----------------ARIWTSDGSL---KST--LGQHKGPIFALKWNKRGNYILSAGV-----DKTTIIWD  349 (602)
Q Consensus       296 ~~~~~dg~----------------i~i~~~~~~~---~~~--~~~~~~~i~~~~~~~~~~~l~~~~~-----dg~i~~wd  349 (602)
                      +.+..++.                |++|++.+..   ...  ...+...+..+.|+|||++|+..+.     +..|.+||
T Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d  265 (710)
T 2xdw_A          186 FYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCD  265 (710)
T ss_dssp             EEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEE
T ss_pred             EEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEE
Confidence            99888765                9999987433   122  2234556889999999999987765     56899999


Q ss_pred             CCC------Cc-eeEEeeeccCCeeeeeccC-CCeEEEeeC----CCeEEEEEcCCCce--eeEeccCCC--CeEEEEEC
Q psy12697        350 AAS------GQ-CEQQFSFHSAPALDVDWQS-NTSFASCST----DQHIHVCKLHSDKP--VKSFEGHTN--EVNAIKWD  413 (602)
Q Consensus       350 ~~~------~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~----~~~i~i~d~~~~~~--~~~~~~~~~--~i~~~~~~  413 (602)
                      +.+      +. ....+..+....... |++ ++.++..+.    ++.|.+||+.++..  ...+..|..  .+..++|+
T Consensus       266 ~~~~~~~~~~~~~~~~l~~~~~~~~~~-~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~  344 (710)
T 2xdw_A          266 LQQESNGITGILKWVKLIDNFEGEYDY-VTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACV  344 (710)
T ss_dssp             GGGSSSSSCSSCCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEE
T ss_pred             CcccccccCCccceEEeeCCCCcEEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEE
Confidence            976      43 344555554444443 444 455555544    34699999987742  345555544  68889999


Q ss_pred             CCCCEEEEEECCCe--EEEEeCCCCeeeEeeccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccC
Q psy12697        414 PQGLLLASCSDDMT--LKIWSLDKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKR  491 (602)
Q Consensus       414 ~~~~~l~~~~~dg~--i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~  491 (602)
                      +++.++++...|+.  |.+|++.+++.+..+..+.                                  +.+..+.++|+
T Consensus       345 ~~~~lv~~~~~~g~~~l~~~~~~~g~~~~~l~~~~----------------------------------~~v~~~~~s~d  390 (710)
T 2xdw_A          345 RSNFLVLCYLHDVKNTLQLHDLATGALLKIFPLEV----------------------------------GSVVGYSGQKK  390 (710)
T ss_dssp             TTTEEEEEEEETTEEEEEEEETTTCCEEEEECCCS----------------------------------SEEEEEECCTT
T ss_pred             cCCEEEEEEEECCEEEEEEEECCCCCEEEecCCCC----------------------------------ceEEEEecCCC
Confidence            88888888888885  5667776666555554433                                  34455566667


Q ss_pred             CCEEEEE-e---CCCeEEEEeCCCCc
Q psy12697        492 GNYILSA-G---VDKTTIIWDAASGQ  513 (602)
Q Consensus       492 ~~~l~s~-~---~dg~i~iwd~~~~~  513 (602)
                      ++.++.. +   ..++|+.||+.+++
T Consensus       391 ~~~l~~~~ss~~~P~~i~~~d~~tg~  416 (710)
T 2xdw_A          391 DTEIFYQFTSFLSPGIIYHCDLTKEE  416 (710)
T ss_dssp             CSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred             CCEEEEEEeCCCCCCEEEEEECCCCc
Confidence            6655533 2   35789999999887

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.70  E-value=2.6e-13  Score=127.29  Aligned_cols=284  Identities=8%  Similarity=0.027  Sum_probs=194.4

Q ss_pred             eeccCCceEEEEECCCCCeEEEeeCCceEEEEecCCceeEEEeeccCceEEEEeCCCCCCCCCCCCccccccccccCCcc
Q psy12697        136 LTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKGTGGIFEVCWNSRGTPPNPPESMEVDASIEIPQSKA  215 (602)
Q Consensus       136 l~~h~~~V~~~~~s~d~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  215 (602)
                      +..+...+.+++++++|+++++...++.|.+||.. ++.. .+.                                    
T Consensus        10 ~~~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~-~~~------------------------------------   51 (299)
T 2z2n_A           10 LTNQDTGPYGITVSDKGKVWITQHKANMISCINLD-GKIT-EYP------------------------------------   51 (299)
T ss_dssp             CCSSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEE-EEE------------------------------------
T ss_pred             CCCcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeE-Eec------------------------------------
Confidence            34556789999999999988877778999999987 5432 111                                    


Q ss_pred             eEeeCCCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEeeCCCCCeE
Q psy12697        216 TKLIGHESEVFICAWNPVKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFL  295 (602)
Q Consensus       216 ~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l  295 (602)
                        +..+...+..+++.+++.++++...++.|..|+.. +.      ...   ... .     .....+.++++.+++.++
T Consensus        52 --~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~------~~~---~~~-~-----~~~~~~~~i~~~~~g~l~  113 (299)
T 2z2n_A           52 --LPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK-GI------IKE---YTL-P-----NPDSAPYGITEGPNGDIW  113 (299)
T ss_dssp             --CSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SC------EEE---EEC-S-----STTCCEEEEEECTTSCEE
T ss_pred             --CCcccCceeeEEECCCCCEEEeCCCCCeEEEECCC-Cc------EEE---EeC-C-----CcCCCceeeEECCCCCEE
Confidence              11234568899999999988887778889999875 21      110   000 0     123568899999999888


Q ss_pred             EEEeCCCeEEEEcCCCcceee-cccccCCeEEEEEccCCCEEEEEecCCcEEEEeCCCCceeEE-eeeccCCeeeeeccC
Q psy12697        296 ATGSYDGYARIWTSDGSLKST-LGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQ-FSFHSAPALDVDWQS  373 (602)
Q Consensus       296 ~~~~~dg~i~i~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~-~~~~~~~~~~~~~~~  373 (602)
                      ++...++.|..|+..+..... .......+..+++.++++.+++...++.|..||. +++.... .......+..+++.+
T Consensus       114 v~~~~~~~i~~~d~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~  192 (299)
T 2z2n_A          114 FTEMNGNRIGRITDDGKIREYELPNKGSYPSFITLGSDNALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGN  192 (299)
T ss_dssp             EEETTTTEEEEECTTCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECT
T ss_pred             EEecCCceEEEECCCCCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECC
Confidence            877778899999986544432 2234567899999999987777767789999998 6665432 222344577888888


Q ss_pred             CCeEEEee-CCCeEEEEEcCCCceeeE-eccCCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeeeEeeccccccEEE
Q psy12697        374 NTSFASCS-TDQHIHVCKLHSDKPVKS-FEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHDLQAHNKEIYT  451 (602)
Q Consensus       374 ~~~~~~~~-~~~~i~i~d~~~~~~~~~-~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~  451 (602)
                      ++.+.++. .++.|.+||. +++.... ...+...+.+++++++|+++++...++.|..||. +++. ..+..       
T Consensus       193 ~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~-~~~~~-------  262 (299)
T 2z2n_A          193 DDALWFVEIIGNKIGRITT-SGEITEFKIPTPNARPHAITAGAGIDLWFTEWGANKIGRLTS-NNII-EEYPI-------  262 (299)
T ss_dssp             TSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEET-TTEE-EEEEC-------
T ss_pred             CCCEEEEccCCceEEEECC-CCcEEEEECCCCCCCceeEEECCCCCEEEeccCCceEEEECC-CCce-EEEeC-------
Confidence            77666665 4788999999 6553322 3334567999999999987776667789999998 3432 22210       


Q ss_pred             EEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCc
Q psy12697        452 IKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQ  513 (602)
Q Consensus       452 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~~~~~  513 (602)
                                               ..+...+.++++ ++|++.++.. .+.+..+|..+++
T Consensus       263 -------------------------~~~~~~~~~i~~-~~g~l~v~~~-~~~l~~~~~~~~~  297 (299)
T 2z2n_A          263 -------------------------QIKSAEPHGICF-DGETIWFAME-CDKIGKLTLIKDN  297 (299)
T ss_dssp             -------------------------SSSSCCEEEEEE-CSSCEEEEET-TTEEEEEEEC---
T ss_pred             -------------------------CCCCCccceEEe-cCCCEEEEec-CCcEEEEEcCccc
Confidence                                     012345667777 7887776655 5667778776543

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.70  E-value=3e-14  Score=135.13  Aligned_cols=269  Identities=6%  Similarity=-0.044  Sum_probs=185.2

Q ss_pred             CCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEeeCCCCCeEEEEeCCCeEEEEcCC-Ccceeecccc
Q psy12697        242 GDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFLATGSYDGYARIWTSD-GSLKSTLGQH  320 (602)
Q Consensus       242 ~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~-~~~~~~~~~~  320 (602)
                      .++.|.++|.++++.........        .  ..+.......+.+. +++.+++...++.|.+||.. ++....+. .
T Consensus        15 ~~~~l~~~d~~t~~~~~~i~~~~--------n--~~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~-~   82 (328)
T 3dsm_A           15 SNATLSYYDPATCEVENEVFYRA--------N--GFKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRIT-G   82 (328)
T ss_dssp             CCBEEEEEETTTTEEECSHHHHH--------H--SSCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEE-C
T ss_pred             CCceEEEEECCCCEEhhhhHhhh--------c--CcccCccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcC-C
Confidence            37899999998875432211000        0  00112345667764 34555666667999999987 55555553 3


Q ss_pred             cCCeEEEEEccCCCEEEEEecCCcEEEEeCCCCceeEEeeecc-----CCeeeeeccCCCeEEEee--CCCeEEEEEcCC
Q psy12697        321 KGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHS-----APALDVDWQSNTSFASCS--TDQHIHVCKLHS  393 (602)
Q Consensus       321 ~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~--~~~~i~i~d~~~  393 (602)
                      ......++++++++..++...++.|.+||..+++....+....     .....+++ .++.++++.  .++.|.++|..+
T Consensus        83 ~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~-~~~~lyv~~~~~~~~v~viD~~t  161 (328)
T 3dsm_A           83 FTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ-YGKYVYVNCWSYQNRILKIDTET  161 (328)
T ss_dssp             CSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE-ETTEEEEEECTTCCEEEEEETTT
T ss_pred             CCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE-ECCEEEEEcCCCCCEEEEEECCC
Confidence            4678899999998544444378999999999998887776543     13445666 456655555  488999999999


Q ss_pred             CceeeEeccCCCCeEEEEECCCCCEEEEEECC----------CeEEEEeCCCCeeeEeeccccccEEEEEECCCCCCCCC
Q psy12697        394 DKPVKSFEGHTNEVNAIKWDPQGLLLASCSDD----------MTLKIWSLDKDNCVHDLQAHNKEIYTIKWSPTGPETSN  463 (602)
Q Consensus       394 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d----------g~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~  463 (602)
                      ++.+..+... .....++++|+|++++++..+          +.|.++|..+++....+....                 
T Consensus       162 ~~~~~~i~~g-~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~-----------------  223 (328)
T 3dsm_A          162 DKVVDELTIG-IQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKL-----------------  223 (328)
T ss_dssp             TEEEEEEECS-SCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCT-----------------
T ss_pred             CeEEEEEEcC-CCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCC-----------------
Confidence            9887777643 346789999999977777654          789999998887665543211                 


Q ss_pred             CCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCceeee--ecccCCCeeEeeecCCc--eEEEe
Q psy12697        464 PNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQ--FSFHSAPALDVDWQSNT--SFASC  539 (602)
Q Consensus       464 ~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~--~~~~~~~v~~~~~s~~~--~l~~~  539 (602)
                                      ......++|+|++++|.++..  .|.+||..+++....  +.........++++|++  .+++.
T Consensus       224 ----------------g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~  285 (328)
T 3dsm_A          224 ----------------GDWPSEVQLNGTRDTLYWINN--DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVAD  285 (328)
T ss_dssp             ----------------TCCCEEEEECTTSCEEEEESS--SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEE
T ss_pred             ----------------CCCceeEEEecCCCEEEEEcc--EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEc
Confidence                            124567888888888887754  899999998876421  22224568899999954  45554


Q ss_pred             ----eCCCcEEEeecCCCCceeeee
Q psy12697        540 ----STDQHIHVCKLHSDKPVKSFE  560 (602)
Q Consensus       540 ----~~d~~i~iw~~~~~~~~~~~~  560 (602)
                          ..++.|.+||.. ++.+.+++
T Consensus       286 ~~~y~~~~~V~v~d~~-g~~~~~i~  309 (328)
T 3dsm_A          286 AIDYQQQGIVYRYSPQ-GKLIDEFY  309 (328)
T ss_dssp             CTTSSSEEEEEEECTT-CCEEEEEE
T ss_pred             ccccccCCEEEEECCC-CCEEEEEE
Confidence                568899999987 77766664

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.70  E-value=9.7e-16  Score=161.49  Aligned_cols=247  Identities=14%  Similarity=0.050  Sum_probs=169.6

Q ss_pred             ccCCceEEEEECCCCCeEE-----EeeCCceEEEEecCCceeEEEeeccCceEEEEeCCCCCCCCCCCCccccccccccC
Q psy12697        138 RHTEPVYSVAFSPDGKFLA-----SGSFDKCVHIWSARTGQLVHSYKGTGGIFEVCWNSRGTPPNPPESMEVDASIEIPQ  212 (602)
Q Consensus       138 ~h~~~V~~~~~s~d~~~l~-----s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  212 (602)
                      +|...+..++|||||++||     .|+.+..|++||+.+|+.+..                                   
T Consensus       118 ~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~-----------------------------------  162 (695)
T 2bkl_A          118 DGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKV-----------------------------------  162 (695)
T ss_dssp             SSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSS-----------------------------------
T ss_pred             CCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCC-----------------------------------
Confidence            4666899999999999999     455567999999999875310                                   


Q ss_pred             CcceEeeCCCcceEEEEEcCCCCEEEEeeCCCc-------------EEEEeCCCCCCCCCccceEEEEEEecCCCcccCC
Q psy12697        213 SKATKLIGHESEVFICAWNPVKDFLASGSGDST-------------ARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPS  279 (602)
Q Consensus       213 ~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~-------------i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (602)
                         ..+...  ....++|+|||+.|+.++.|..             |++|++.++.....    ...        ....+
T Consensus       163 ---~~~~~~--~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~----lv~--------~~~~~  225 (695)
T 2bkl_A          163 ---DVIEGG--KYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDT----VVH--------ERTGD  225 (695)
T ss_dssp             ---CCBSCC--TTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCE----EEE--------CCCCC
T ss_pred             ---cccCcc--cccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhce----EEE--------ecCCC
Confidence               000001  1156899999999999988776             99999987642110    000        00112


Q ss_pred             CCceeEEeeCCCCCeEEEEeCCC----eEEEEcCCCcceeecccccCCeEEEEEccCCCEEEEEec----CCcEEEEeCC
Q psy12697        280 NKDVTSLDWNNNGSFLATGSYDG----YARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGV----DKTTIIWDAA  351 (602)
Q Consensus       280 ~~~i~~~~~~~~~~~l~~~~~dg----~i~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~----dg~i~~wd~~  351 (602)
                      ...+..+.|+|||++|+.++.++    .|.+|+..+.....+..+...+....+ +++. ++..+.    ++.|.+||+.
T Consensus       226 ~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~  303 (695)
T 2bkl_A          226 PTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFRLLVKGVGAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPA  303 (695)
T ss_dssp             TTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSCEEEEECSSCCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTT
T ss_pred             CEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCceEEeecCCCceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCC
Confidence            34678999999999999887766    788887654445555556666666666 6666 554443    5789999998


Q ss_pred             CCce---eEEeeec-cCCeeeeeccCCCeEEEeeCCCeEEEEEcC-CCceeeEeccC-CCCeEEEEECCCCCEEEEEE--
Q psy12697        352 SGQC---EQQFSFH-SAPALDVDWQSNTSFASCSTDQHIHVCKLH-SDKPVKSFEGH-TNEVNAIKWDPQGLLLASCS--  423 (602)
Q Consensus       352 ~~~~---~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~-~~~~~~~~~~~-~~~i~~~~~~~~~~~l~~~~--  423 (602)
                      ++..   ...+..+ ...+..+.++.+..+++...++..++|.+. +++....+..+ ...+..++++|+++.++...  
T Consensus       304 ~~~~~~~~~l~~~~~~~~l~~~~~~~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss  383 (695)
T 2bkl_A          304 KPARASWKEIVPEDSSASLLSVSIVGGHLSLEYLKDATSEVRVATLKGKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTS  383 (695)
T ss_dssp             BCSGGGCEEEECCCSSCEEEEEEEETTEEEEEEEETTEEEEEEEETTCCEEEECCCSSSSEECCCBSCTTCSEEEEEEEE
T ss_pred             CCCccCCeEEecCCCCCeEEEEEEECCEEEEEEEECCEEEEEEEeCCCCeeEEecCCCCeEEEEeecCCCCCEEEEEEcC
Confidence            7753   2333323 445677888866677888888888777654 35555666555 56688889999998777433  


Q ss_pred             --CCCeEEEEeCCCCee
Q psy12697        424 --DDMTLKIWSLDKDNC  438 (602)
Q Consensus       424 --~dg~i~iwd~~~~~~  438 (602)
                        ..++|++||+.+++.
T Consensus       384 ~~~P~~v~~~d~~~g~~  400 (695)
T 2bkl_A          384 FTTPRQIYKTSVSTGKS  400 (695)
T ss_dssp             TTEEEEEEEEETTTCCE
T ss_pred             CCCCCEEEEEECCCCcE
Confidence              347899999987653

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.68  E-value=1.2e-14  Score=137.85  Aligned_cols=268  Identities=12%  Similarity=0.039  Sum_probs=181.5

Q ss_pred             eccceeeeecccceeeeeee------ccCCceEEEEECCCCCeEEEeeCCceEEEEecCCceeEEEeeccCceEEEEeCC
Q psy12697        118 HRLTLPLWDVERGECLNTLT------RHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKGTGGIFEVCWNS  191 (602)
Q Consensus       118 ~~~~i~vwd~~~~~~~~~l~------~h~~~V~~~~~s~d~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~  191 (602)
                      .+++|.++|.++++....+.      ........+.+. ++++.++...++.|.+||..+++.+.++.            
T Consensus        15 ~~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~------------   81 (328)
T 3dsm_A           15 SNATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRIT------------   81 (328)
T ss_dssp             CCBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEE------------
T ss_pred             CCceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcC------------
Confidence            36789999999999877652      122446778774 45566666678999999999999886553            


Q ss_pred             CCCCCCCCCCccccccccccCCcceEeeCCCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCccceEEEEEEec
Q psy12697        192 RGTPPNPPESMEVDASIEIPQSKATKLIGHESEVFICAWNPVKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCIS  271 (602)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~  271 (602)
                                                   .......++++++++..++...++.|.+||..+++....          +.
T Consensus        82 -----------------------------~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~----------i~  122 (328)
T 3dsm_A           82 -----------------------------GFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGY----------IE  122 (328)
T ss_dssp             -----------------------------CCSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEE----------EE
T ss_pred             -----------------------------CCCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEE----------EE
Confidence                                         234567888988885444444789999999987643210          00


Q ss_pred             CCCcccCCCCceeEEeeCCCCCeEEEEe--CCCeEEEEcCC-CcceeecccccCCeEEEEEccCCCEEEEEecC------
Q psy12697        272 KGGTEVPSNKDVTSLDWNNNGSFLATGS--YDGYARIWTSD-GSLKSTLGQHKGPIFALKWNKRGNYILSAGVD------  342 (602)
Q Consensus       272 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~dg~i~i~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d------  342 (602)
                      .. ...........+++ . +..++++.  .++.|.++|.. ++....+.. ......+.++|+|++++++..+      
T Consensus       123 ~g-~~~~~~~~p~~i~~-~-~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~-g~~p~~i~~~~dG~l~v~~~~~~~~~~~  198 (328)
T 3dsm_A          123 CP-DMDMESGSTEQMVQ-Y-GKYVYVNCWSYQNRILKIDTETDKVVDELTI-GIQPTSLVMDKYNKMWTITDGGYEGSPY  198 (328)
T ss_dssp             CT-TCCTTTCBCCCEEE-E-TTEEEEEECTTCCEEEEEETTTTEEEEEEEC-SSCBCCCEECTTSEEEEEBCCBCTTCSS
T ss_pred             cC-CccccCCCcceEEE-E-CCEEEEEcCCCCCEEEEEECCCCeEEEEEEc-CCCccceEEcCCCCEEEEECCCccCCcc
Confidence            00 00000114456666 3 44455544  48899999987 444444433 3345688999999877666544      


Q ss_pred             ----CcEEEEeCCCCceeEEeeec-cCCeeeeeccCCCe-EEEeeCCCeEEEEEcCCCceeeE--eccCCCCeEEEEECC
Q psy12697        343 ----KTTIIWDAASGQCEQQFSFH-SAPALDVDWQSNTS-FASCSTDQHIHVCKLHSDKPVKS--FEGHTNEVNAIKWDP  414 (602)
Q Consensus       343 ----g~i~~wd~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~i~i~d~~~~~~~~~--~~~~~~~i~~~~~~~  414 (602)
                          +.|.++|..+++....+... ......+++++++. ++++..  .|.+||..+++....  +.........++++|
T Consensus       199 ~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp  276 (328)
T 3dsm_A          199 GYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN--DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNP  276 (328)
T ss_dssp             CBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEESS--SEEEEETTCSSCCSSCSBCCCSSCEEEEEECT
T ss_pred             ccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEcc--EEEEEECCCCceeeeeeecCCCCceEEEEEcC
Confidence                78999999999887777643 23678899998654 444433  999999988775321  222245688999999


Q ss_pred             -CCCEEEEE----ECCCeEEEEeCCCCeeeEeecc
Q psy12697        415 -QGLLLASC----SDDMTLKIWSLDKDNCVHDLQA  444 (602)
Q Consensus       415 -~~~~l~~~----~~dg~i~iwd~~~~~~~~~~~~  444 (602)
                       ++.++++.    ..++.|.+||.. ++.+.++..
T Consensus       277 ~~g~lyva~~~~y~~~~~V~v~d~~-g~~~~~i~~  310 (328)
T 3dsm_A          277 NNGEVYVADAIDYQQQGIVYRYSPQ-GKLIDEFYV  310 (328)
T ss_dssp             TTCCEEEEECTTSSSEEEEEEECTT-CCEEEEEEE
T ss_pred             CCCeEEEEcccccccCCEEEEECCC-CCEEEEEEe
Confidence             55555665    568999999998 888877753

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.68  E-value=2.1e-14  Score=131.84  Aligned_cols=235  Identities=15%  Similarity=0.119  Sum_probs=173.2

Q ss_pred             CCCCeEEEeeCCceEEEEecCCceeEEEeeccCceEEEEeCCCCCCCCCCCCccccccccccCCcceEeeCCC-cceEEE
Q psy12697        150 PDGKFLASGSFDKCVHIWSARTGQLVHSYKGTGGIFEVCWNSRGTPPNPPESMEVDASIEIPQSKATKLIGHE-SEVFIC  228 (602)
Q Consensus       150 ~d~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~-~~v~~~  228 (602)
                      ..+++|++++.|+.|.+||.++|+.+.++..                                        +. ..+.++
T Consensus         3 ~~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~----------------------------------------~~~~~~~~~   42 (276)
T 3no2_A            3 SPQHLLVGGSGWNKIAIINKDTKEIVWEYPL----------------------------------------EKGWECNSV   42 (276)
T ss_dssp             CCCEEEEECTTCSEEEEEETTTTEEEEEEEC----------------------------------------CTTCCCCEE
T ss_pred             CCCcEEEeeCCCCEEEEEECCCCeEEEEeCC----------------------------------------CccCCCcCe
Confidence            3468999999999999999999999876642                                        22 356788


Q ss_pred             EEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEeeCCCCCeEEEEeC-CCeEEEE
Q psy12697        229 AWNPVKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFLATGSY-DGYARIW  307 (602)
Q Consensus       229 ~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~i~i~  307 (602)
                      .++|+|++++  +.++.|..||. +++.......               +....+.++.+.++|+.+++.+. ++.+..+
T Consensus        43 ~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~---------------~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~v  104 (276)
T 3no2_A           43 AATKAGEILF--SYSKGAKMITR-DGRELWNIAA---------------PAGCEMQTARILPDGNALVAWCGHPSTILEV  104 (276)
T ss_dssp             EECTTSCEEE--ECBSEEEEECT-TSCEEEEEEC---------------CTTCEEEEEEECTTSCEEEEEESTTEEEEEE
T ss_pred             EECCCCCEEE--eCCCCEEEECC-CCCEEEEEcC---------------CCCccccccEECCCCCEEEEecCCCCEEEEE
Confidence            8999999888  34678999988 5543211110               11245788999999999999887 8889889


Q ss_pred             cCCCcceeecc------cccCCeEEEEEccCCCEEEEEecCCcEEEEeCCCCceeEEeeeccCCeeeeeccCCC-eEEEe
Q psy12697        308 TSDGSLKSTLG------QHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNT-SFASC  380 (602)
Q Consensus       308 ~~~~~~~~~~~------~~~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  380 (602)
                      +.+++.+..+.      .+......+++.++|+++++...++.|..||.. |+.+..+..... +..+...+++ .++++
T Consensus       105 d~~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~~w~~~~~~~-~~~~~~~~~g~~~v~~  182 (276)
T 3no2_A          105 NMKGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQLLNSVKLSGT-PFSSAFLDNGDCLVAC  182 (276)
T ss_dssp             CTTSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECSSC-CCEEEECTTSCEEEEC
T ss_pred             eCCCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-CCEEEEEECCCC-ccceeEcCCCCEEEEe
Confidence            98887765543      222345566789999999999999999999988 999988876533 4445556654 56666


Q ss_pred             eCCCeEEEEEcCCCceeeEeccCC------CCeEEEEECCCCCEEEEEECC--------CeEEEEeC-CCCeeeEeecc
Q psy12697        381 STDQHIHVCKLHSDKPVKSFEGHT------NEVNAIKWDPQGLLLASCSDD--------MTLKIWSL-DKDNCVHDLQA  444 (602)
Q Consensus       381 ~~~~~i~i~d~~~~~~~~~~~~~~------~~i~~~~~~~~~~~l~~~~~d--------g~i~iwd~-~~~~~~~~~~~  444 (602)
                      ..++.|..+|..+++.+.++..+.      ..+..++..++|.++++....        +..+++++ .+++.+.++..
T Consensus       183 ~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~~g~~~~~~~~~~~~~~~~~~~g~~~W~~~~  261 (276)
T 3no2_A          183 GDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICNWQGHDREAGKGKHPQLVEIDSEGKVVWQLND  261 (276)
T ss_dssp             BTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEEECTTCTTGGGSCCCSEEEECTTSBEEEEECC
T ss_pred             CCCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCEEEEeccCccccccccCCceEEEECCCCCEEEEecC
Confidence            677789999999999988886432      237889999999998887521        23356665 46777766654

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.67  E-value=6.8e-14  Score=131.94  Aligned_cols=297  Identities=13%  Similarity=0.072  Sum_probs=194.6

Q ss_pred             EECCCCCeEEEeeC-----CceEEEEecCCceeEEEeeccCceEEEEeCCCCCCCCCCCCccccccccccCCcceEeeCC
Q psy12697        147 AFSPDGKFLASGSF-----DKCVHIWSARTGQLVHSYKGTGGIFEVCWNSRGTPPNPPESMEVDASIEIPQSKATKLIGH  221 (602)
Q Consensus       147 ~~s~d~~~l~s~~~-----d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h  221 (602)
                      ...|+++.+.....     ++.|.+.|..+++.+..++.                                       + 
T Consensus        39 ~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~v---------------------------------------G-   78 (386)
T 3sjl_D           39 APAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDG---------------------------------------G-   78 (386)
T ss_dssp             CCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEE---------------------------------------C-
T ss_pred             ccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEEC---------------------------------------C-
Confidence            34688888777754     68999999999998876542                                       1 


Q ss_pred             CcceEEEEEcCCCCEEEEee----------CCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEeeCCC
Q psy12697        222 ESEVFICAWNPVKDFLASGS----------GDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNN  291 (602)
Q Consensus       222 ~~~v~~~~~~~~~~~l~s~~----------~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  291 (602)
                      ..+  .++++||++++++++          .++.|.+||..+.+.......         ..+...........++++||
T Consensus        79 ~~P--~va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v---------~~g~r~~~g~~P~~~a~spD  147 (386)
T 3sjl_D           79 FLP--NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIEL---------PDAPRFLVGTYPWMTSLTPD  147 (386)
T ss_dssp             SSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEE---------TTCCCCCBSCCGGGEEECTT
T ss_pred             CCC--cEEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEEC---------CCccccccCCCCceEEEcCC
Confidence            223  389999999887765          367899999988654221110         00000001234567999999


Q ss_pred             CCeEEEEeC--CCeEEEEcCCC-cceeecccccCCeEEEEEccCCCEEEEEecCCcEEEEeCCC-CceeEEeee----cc
Q psy12697        292 GSFLATGSY--DGYARIWTSDG-SLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAAS-GQCEQQFSF----HS  363 (602)
Q Consensus       292 ~~~l~~~~~--dg~i~i~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~-~~~~~~~~~----~~  363 (602)
                      |++++++..  ++.|.++|... +...++.. .+ . ...+....+.+++.+.||.+.+.++.+ ++.......    ..
T Consensus       148 Gk~lyVan~~~~~~VsVID~~t~~vv~tI~v-~g-~-~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~  224 (386)
T 3sjl_D          148 GKTLLFYQFSPAPAVGVVDLEGKAFKRMLDV-PD-C-YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPED  224 (386)
T ss_dssp             SSEEEEEECSSSCEEEEEETTTTEEEEEEEC-CS-E-EEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTT
T ss_pred             CCEEEEEEcCCCCeEEEEECCCCcEEEEEEC-CC-c-ceeecCCCceeEEECCCCCEEEEECCCCCeEEEeecceecccc
Confidence            999998864  68999999874 44444432 11 1 223333456777888899999999876 554322111    11


Q ss_pred             CCee-eeec-cCCCeEEEeeCCCeEEEEEcCCCc--eeeEec---------c-CCCCeEEEEECCCCCEEEEEEC-----
Q psy12697        364 APAL-DVDW-QSNTSFASCSTDQHIHVCKLHSDK--PVKSFE---------G-HTNEVNAIKWDPQGLLLASCSD-----  424 (602)
Q Consensus       364 ~~~~-~~~~-~~~~~~~~~~~~~~i~i~d~~~~~--~~~~~~---------~-~~~~i~~~~~~~~~~~l~~~~~-----  424 (602)
                      .++. ...| .+++.++..+.+|.+++.|..+..  .+..+.         + .......++++|+++.++....     
T Consensus       225 ~~~~~~~~~~~~dG~~~~vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~  304 (386)
T 3sjl_D          225 EFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEW  304 (386)
T ss_dssp             SCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTT
T ss_pred             ccccccceeEcCCCcEEEEeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEecccccc
Confidence            1221 1344 357777777789999999997664  222221         0 1123445788999998888653     


Q ss_pred             -----CCeEEEEeCCCCeeeEeeccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCC-EEEEE
Q psy12697        425 -----DMTLKIWSLDKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGN-YILSA  498 (602)
Q Consensus       425 -----dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~-~l~s~  498 (602)
                           .+.|.+.|+.+++.+.++...                                   ..+..+++++|++ +|++.
T Consensus       305 ~hk~~~~~V~viD~~t~kv~~~i~vg-----------------------------------~~~~~lavs~D~~~~ly~t  349 (386)
T 3sjl_D          305 RHKTASRFVVVLDAKTGERLAKFEMG-----------------------------------HEIDSINVSQDEKPLLYAL  349 (386)
T ss_dssp             CTTSCEEEEEEEETTTCCEEEEEEEE-----------------------------------EEECEEEECSSSSCEEEEE
T ss_pred             ccCCCCCEEEEEECCCCeEEEEEECC-----------------------------------CCcceEEECCCCCeEEEEE
Confidence                 257999999999988877532                                   2345677777886 66654


Q ss_pred             -eCCCeEEEEeCCCCceeeeecccCCCeeEeeecCC
Q psy12697        499 -GVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSN  533 (602)
Q Consensus       499 -~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~  533 (602)
                       ..++.|.++|..+++.+.++..- +.-..+.+++|
T Consensus       350 n~~~~~VsViD~~t~k~~~~i~~~-~~p~~l~~s~d  384 (386)
T 3sjl_D          350 STGDKTLYIHDAESGEELRSVNQL-GHGPQVITTAD  384 (386)
T ss_dssp             ETTTTEEEEEETTTCCEEEEECCC-CSSCCEEEECC
T ss_pred             cCCCCeEEEEECCCCcEEEEecCC-CCCceeEECCc
Confidence             45899999999999999888743 33345566655

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.67  E-value=5.7e-14  Score=129.63  Aligned_cols=233  Identities=9%  Similarity=-0.035  Sum_probs=161.3

Q ss_pred             CeEEEEEccCCCEEE-EEecCCcEEEEeCCCCceeEEeeeccCCeeeeeccCCCeEEEeeCCCeEEEEEcCCCceeeEec
Q psy12697        323 PIFALKWNKRGNYIL-SAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFE  401 (602)
Q Consensus       323 ~i~~~~~~~~~~~l~-~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~  401 (602)
                      ...+++++++++.++ +.+.++.|..||..+.............+..+++.+++.++++..++.|.+||...........
T Consensus        25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~i~~~d~~~~~~~~~~~  104 (270)
T 1rwi_B           25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQTVLPF  104 (270)
T ss_dssp             CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEEETTTEEEEECTTCSCCEECCC
T ss_pred             CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEEcCCCEEEEEeCCCceEeeeec
Confidence            678999999998666 4467889999997665433222223346778888888777776668899999987654432222


Q ss_pred             cCCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeeeEeeccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccC
Q psy12697        402 GHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKG  481 (602)
Q Consensus       402 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  481 (602)
                      .....+..++++|+|+++++...++.|.+|+..+........                                  ....
T Consensus       105 ~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~----------------------------------~~~~  150 (270)
T 1rwi_B          105 DGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPF----------------------------------TGLN  150 (270)
T ss_dssp             CSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCC----------------------------------CSCC
T ss_pred             CCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeecc----------------------------------ccCC
Confidence            333578999999999988877778899999765432221100                                  0123


Q ss_pred             CeEEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeeecccCCCeeEeeecCCc-eEEEeeCCCcEEEeecCCCCceeeee
Q psy12697        482 PIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNT-SFASCSTDQHIHVCKLHSDKPVKSFE  560 (602)
Q Consensus       482 ~v~~i~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~-~l~~~~~d~~i~iw~~~~~~~~~~~~  560 (602)
                      .+..++++++|+++++...++.|.+||...+........+...+..++++++| .+++...++.|.+|+...........
T Consensus       151 ~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~  230 (270)
T 1rwi_B          151 DPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPF  230 (270)
T ss_dssp             SCCCEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEECCC
T ss_pred             CceeEEEeCCCCEEEEECCCCEEEEEecCCCceEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcceeecc
Confidence            45678889999977777778899999988766544333344668899999999 66666678899999986543222110


Q ss_pred             cccccceEEEEecCCcEEEEEECCCCCeEEEeccCCeEEe
Q psy12697        561 GHTTGQLVHSYKGTGGIFEVCWNSRGDKVGASASDGSVFK  600 (602)
Q Consensus       561 ~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~v~i  600 (602)
                                 .+...+.+++++|+|+++++...++.|++
T Consensus       231 -----------~~~~~p~~i~~~~~g~l~v~~~~~~~v~~  259 (270)
T 1rwi_B          231 -----------TGLNTPLAVAVDSDRTVYVADRGNDRVVK  259 (270)
T ss_dssp             -----------CSCSCEEEEEECTTCCEEEEEGGGTEEEE
T ss_pred             -----------CCCCCceeEEECCCCCEEEEECCCCEEEE
Confidence                       01245889999999998888888988876

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.67  E-value=5.5e-13  Score=127.99  Aligned_cols=278  Identities=10%  Similarity=-0.037  Sum_probs=176.9

Q ss_pred             ceeeeecccceeeeeeeccCCceEEEEECCCCCeEEEee----------CCceEEEEecCCceeEEEeeccCceEEEEeC
Q psy12697        121 TLPLWDVERGECLNTLTRHTEPVYSVAFSPDGKFLASGS----------FDKCVHIWSARTGQLVHSYKGTGGIFEVCWN  190 (602)
Q Consensus       121 ~i~vwd~~~~~~~~~l~~h~~~V~~~~~s~d~~~l~s~~----------~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~  190 (602)
                      +|.++|..+++.+.++.....+  .++|||||++|+.+.          .++.|.+||..+++.+..+...+..      
T Consensus        48 ~v~v~D~~t~~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~------  119 (373)
T 2mad_H           48 QQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAP------  119 (373)
T ss_pred             EEEEEECCCCeEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCcc------
Confidence            8999999999999888765555  999999999998886          3688999999998887665432100      


Q ss_pred             CCCCCCCCCCCccccccccccCCcceEeeCCCcceEEEEEcCCCCEEEEeeC--CCcEEEEeCCCCCCCCC-ccceEEEE
Q psy12697        191 SRGTPPNPPESMEVDASIEIPQSKATKLIGHESEVFICAWNPVKDFLASGSG--DSTARIWDMTDSTKKDP-KELQIVLR  267 (602)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~--dg~i~iw~~~~~~~~~~-~~~~~~~~  267 (602)
                                               ...  +......+.|+|||++|+++..  ++.|.++| .+++.... ...     
T Consensus       120 -------------------------~~~--~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~-----  166 (373)
T 2mad_H          120 -------------------------RFD--VGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSS-----  166 (373)
T ss_pred             -------------------------ccc--cCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCC-----
Confidence                                     000  1122447899999999998874  57899999 87654211 110     


Q ss_pred             EEecCCCcccCCCCceeEEeeCCCC-CeEEEEeCCCeEEEEcCCCcceeecc-----cccCC-eEEEEEccCCCEEEEEe
Q psy12697        268 HCISKGGTEVPSNKDVTSLDWNNNG-SFLATGSYDGYARIWTSDGSLKSTLG-----QHKGP-IFALKWNKRGNYILSAG  340 (602)
Q Consensus       268 ~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~i~~~~~~~~~~~~-----~~~~~-i~~~~~~~~~~~l~~~~  340 (602)
                                  .   .++.+.|++ +.+++.+.||.+.+++..++......     ....+ .....+.+++..++..+
T Consensus       167 ------------~---~~~~~~~~~~~~~~~~~~dg~~~~vd~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~  231 (373)
T 2mad_H          167 ------------P---TCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPV  231 (373)
T ss_pred             ------------C---ceEEEEeCCCceEEEEcCCCCEEEEECCCcEEEEEeccccccCCcceeecceeEecCCEEEEEc
Confidence                        1   123344544 34566677888888887333331111     11112 12345666666555555


Q ss_pred             cCCcEEEEeCCCCceeEEeeeccCCeeeeeccCCCeEEEeeCCCeEEEEEcCCCceeeEeccCCCCeEEEEECCCCCEEE
Q psy12697        341 VDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLA  420 (602)
Q Consensus       341 ~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~  420 (602)
                      ..+.+.+.|+........                            .-|++.+..... ..-.......++++|+++.++
T Consensus       232 ~~~~v~vid~~~~~~~v~----------------------------~~~~~~~~~~~~-~~~~p~g~~~~~~s~d~~~ly  282 (373)
T 2mad_H          232 YSGKILQADISAAGATNK----------------------------APIDALSGGRKA-DTWRPGGWQQVAYLKSSDGIY  282 (373)
T ss_pred             CCceEEEEeccCCcceEe----------------------------eeeeecCCcccc-cceecCceEeEEECCCCCEEE
Confidence            677888888765422110                            011111110000 000112244577899998888


Q ss_pred             EEEC----------CCeEEEEeCCCCeeeEeeccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEcc
Q psy12697        421 SCSD----------DMTLKIWSLDKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNK  490 (602)
Q Consensus       421 ~~~~----------dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~  490 (602)
                      +...          ++.|.++|+.+++.+.++...                                   .....++|+|
T Consensus       283 V~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~g-----------------------------------~~p~~i~~s~  327 (373)
T 2mad_H          283 LLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLG-----------------------------------HDVDAISVAQ  327 (373)
T ss_pred             EEeccCCcccccCCCCeEEEEECCCCEEEEEEECC-----------------------------------CCcCeEEECC
Confidence            7653          357999999998888777432                                   1345678888


Q ss_pred             CCC-EEEEEe-CCCeEEEEeCCCCceeeee
Q psy12697        491 RGN-YILSAG-VDKTTIIWDAASGQCEQQF  518 (602)
Q Consensus       491 ~~~-~l~s~~-~dg~i~iwd~~~~~~~~~~  518 (602)
                      ||+ +++++. .++.|.+||+.+++.+..+
T Consensus       328 Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~i  357 (373)
T 2mad_H          328 DGGPDLYALSAGTEVLHIYDAGAGDQDQST  357 (373)
T ss_pred             CCCeEEEEEcCCCCeEEEEECCCCCEEeee
Confidence            988 677776 4899999999999988774

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.66  E-value=1e-13  Score=127.25  Aligned_cols=223  Identities=10%  Similarity=0.099  Sum_probs=171.0

Q ss_pred             CCCEEEEEecCCcEEEEeCCCCceeEEeeecc-CCeeeeeccCCCeEEEeeCCCeEEEEEcCCCceeeEeccCC-CCeEE
Q psy12697        332 RGNYILSAGVDKTTIIWDAASGQCEQQFSFHS-APALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEGHT-NEVNA  409 (602)
Q Consensus       332 ~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~-~~i~~  409 (602)
                      .++.|++++.++.|.+||.++++.+..+..+. ..+.++.+.|++.+++ +.++.|+.||. +++.+..+..+. ..+.+
T Consensus         4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv-s~~~~V~~~d~-~G~~~W~~~~~~~~~~~~   81 (276)
T 3no2_A            4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF-SYSKGAKMITR-DGRELWNIAAPAGCEMQT   81 (276)
T ss_dssp             CCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE-ECBSEEEEECT-TSCEEEEEECCTTCEEEE
T ss_pred             CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE-eCCCCEEEECC-CCCEEEEEcCCCCccccc
Confidence            45789999999999999999999999988766 4678888999988777 56888999999 888888888653 47889


Q ss_pred             EEECCCCCEEEEEEC-CCeEEEEeCCCCeeeEeeccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEE
Q psy12697        410 IKWDPQGLLLASCSD-DMTLKIWSLDKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKW  488 (602)
Q Consensus       410 ~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~  488 (602)
                      +.+.|+|+++++.+. ++.|..+|. +++.+..+.....                            ...+......+++
T Consensus        82 ~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~----------------------------~~~~~~~~~~v~~  132 (276)
T 3no2_A           82 ARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETG----------------------------IERPHAQFRQINK  132 (276)
T ss_dssp             EEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCS----------------------------CSSGGGSCSCCEE
T ss_pred             cEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCC----------------------------CCcccccccCceE
Confidence            999999999999887 788888885 6666655532110                            0011223445567


Q ss_pred             ccCCCEEEEEeCCCeEEEEeCCCCceeeeecccCCCeeEeeecCCc-eEEEeeCCCcEEEeecCCCCceeeeecccccce
Q psy12697        489 NKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNT-SFASCSTDQHIHVCKLHSDKPVKSFEGHTTGQL  567 (602)
Q Consensus       489 s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~-~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~  567 (602)
                      .++|+++++...++.|..||.+ |+.+.++... ....++...++| .++++..++.|..+|..+++.+..+........
T Consensus       133 ~~~G~~lv~~~~~~~v~~~d~~-G~~~w~~~~~-~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~  210 (276)
T 3no2_A          133 NKKGNYLVPLFATSEVREIAPN-GQLLNSVKLS-GTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGV  210 (276)
T ss_dssp             CTTSCEEEEETTTTEEEEECTT-SCEEEEEECS-SCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSC
T ss_pred             CCCCCEEEEecCCCEEEEECCC-CCEEEEEECC-CCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCc
Confidence            8899999999999999999998 9999888764 455677888998 777788888999999988988888764321100


Q ss_pred             EEEEecCCcEEEEEECCCCCeEEEe
Q psy12697        568 VHSYKGTGGIFEVCWNSRGDKVGAS  592 (602)
Q Consensus       568 ~~~~~~~~~i~~l~~spdg~~l~~~  592 (602)
                           .-..+..++..++|..+++.
T Consensus       211 -----~l~~~~~~~~~~~G~i~v~~  230 (276)
T 3no2_A          211 -----QLFFVAQLFPLQNGGLYICN  230 (276)
T ss_dssp             -----CCSEEEEEEECTTSCEEEEE
T ss_pred             -----cccccccceEcCCCCEEEEe
Confidence                 01226677788888877776

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.66  E-value=5.6e-14  Score=129.70  Aligned_cols=237  Identities=8%  Similarity=-0.015  Sum_probs=165.4

Q ss_pred             ceeEEeeCCCCCeEE-EEeCCCeEEEEcCCCcceeec-ccccCCeEEEEEccCCCEEEEEecCCcEEEEeCCCCceeEEe
Q psy12697        282 DVTSLDWNNNGSFLA-TGSYDGYARIWTSDGSLKSTL-GQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQF  359 (602)
Q Consensus       282 ~i~~~~~~~~~~~l~-~~~~dg~i~i~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~  359 (602)
                      ...+++++++|++++ +...++.|..|+..+...... ..+...+.+++++++++.+++.. ++.|.+||..........
T Consensus        25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~~~~  103 (270)
T 1rwi_B           25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQTVLP  103 (270)
T ss_dssp             CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCCEECC
T ss_pred             CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceEeeee
Confidence            678999999998777 547788999999765443333 22335678899999998666555 889999998765443221


Q ss_pred             eeccCCeeeeeccCCCeEEEe-eCCCeEEEEEcCCCceeeEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCee
Q psy12697        360 SFHSAPALDVDWQSNTSFASC-STDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNC  438 (602)
Q Consensus       360 ~~~~~~~~~~~~~~~~~~~~~-~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~  438 (602)
                      ......+..+++.+++.+.++ ..++.|.+|+..+.............+..++++|+|+++++...++.|.+||......
T Consensus       104 ~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~  183 (270)
T 1rwi_B          104 FDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQ  183 (270)
T ss_dssp             CCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCE
T ss_pred             cCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCce
Confidence            122356788888887766555 4578899997665544333333334678999999999777777788999999876543


Q ss_pred             eEeeccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeee
Q psy12697        439 VHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQF  518 (602)
Q Consensus       439 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~  518 (602)
                      ......                                  +...+..++++++|.++++...++.|.+||..........
T Consensus       184 ~~~~~~----------------------------------~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~  229 (270)
T 1rwi_B          184 VVLPFT----------------------------------DITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLP  229 (270)
T ss_dssp             EECCCS----------------------------------SCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEECC
T ss_pred             Eeeccc----------------------------------CCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcceeec
Confidence            221110                                  1245677888889987777777889999998765443332


Q ss_pred             cccCCCeeEeeecCCc-eEEEeeCCCcEEEeecCCC
Q psy12697        519 SFHSAPALDVDWQSNT-SFASCSTDQHIHVCKLHSD  553 (602)
Q Consensus       519 ~~~~~~v~~~~~s~~~-~l~~~~~d~~i~iw~~~~~  553 (602)
                      ..+...+.+++++|+| .+++...++.|+++++...
T Consensus       230 ~~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~  265 (270)
T 1rwi_B          230 FTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSLEH  265 (270)
T ss_dssp             CCSCSCEEEEEECTTCCEEEEEGGGTEEEEECCCGG
T ss_pred             cCCCCCceeEEECCCCCEEEEECCCCEEEEEcCCCc
Confidence            2333568999999999 7788888999999997654

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.66  E-value=4.7e-13  Score=128.49  Aligned_cols=283  Identities=9%  Similarity=-0.027  Sum_probs=183.8

Q ss_pred             EcCCCCEEEEeeC--CC---cEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEeeCCCCCeEEEEe-----
Q psy12697        230 WNPVKDFLASGSG--DS---TARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFLATGS-----  299 (602)
Q Consensus       230 ~~~~~~~l~s~~~--dg---~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-----  299 (602)
                      ..|+++++++...  ..   .|.++|..+++....          +       +....- .++++|||++++++.     
T Consensus        28 ~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~----------i-------~~g~~p-~i~~spDg~~lyv~n~~~~~   89 (373)
T 2mad_H           28 PGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGH----------V-------NGGFLP-NPVAAHSGSEFALASTSFSR   89 (373)
T ss_pred             CCCCCCEEEEeCCcccCCccEEEEEECCCCeEEEE----------e-------cCCCCC-CeEECCCCCEEEEEeccccc
Confidence            3467776666653  22   789999987653210          0       011223 899999999999886     


Q ss_pred             -----CCCeEEEEcCC-Ccceeecccc-------cCCeEEEEEccCCCEEEEEec--CCcEEEEeCCCCceeEE-eeecc
Q psy12697        300 -----YDGYARIWTSD-GSLKSTLGQH-------KGPIFALKWNKRGNYILSAGV--DKTTIIWDAASGQCEQQ-FSFHS  363 (602)
Q Consensus       300 -----~dg~i~i~~~~-~~~~~~~~~~-------~~~i~~~~~~~~~~~l~~~~~--dg~i~~wd~~~~~~~~~-~~~~~  363 (602)
                           .++.|.+||.. .+....+...       ......+.|+|||++|+++..  ++.|.++| .+++.+.. +....
T Consensus        90 ~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~~  168 (373)
T 2mad_H           90 IAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSPT  168 (373)
T ss_pred             cccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCCc
Confidence                 36789999986 3333333211       123458999999999998874  47899999 99988777 54332


Q ss_pred             CCeeeeeccCCCeEEEeeCCCeEEEEEcCCCceeeEec-----cCCCC-eEEEEECCCCCEEEEEECCCeEEEEeCCCCe
Q psy12697        364 APALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFE-----GHTNE-VNAIKWDPQGLLLASCSDDMTLKIWSLDKDN  437 (602)
Q Consensus       364 ~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~-----~~~~~-i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~  437 (602)
                      . + .+.......+++.+.||.+.++|. +++......     ....+ .....+.+++..++..+.++.+.+.|+....
T Consensus       169 ~-~-~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~  245 (373)
T 2mad_H          169 C-Y-HIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAG  245 (373)
T ss_pred             e-E-EEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCc
Confidence            2 1 111122345777788999999999 777653321     11111 1234566666555555578899999987542


Q ss_pred             e--eEeeccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeC----------CCeEE
Q psy12697        438 C--VHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGV----------DKTTI  505 (602)
Q Consensus       438 ~--~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~----------dg~i~  505 (602)
                      .  +..+...........|.|.                        ....+.++|+++.+..+..          ++.|.
T Consensus       246 ~~v~~~~~~~~~~~~~~~~~p~------------------------g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~  301 (373)
T 2mad_H          246 ATNKAPIDALSGGRKADTWRPG------------------------GWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVT  301 (373)
T ss_pred             ceEeeeeeecCCcccccceecC------------------------ceEeEEECCCCCEEEEEeccCCcccccCCCCeEE
Confidence            2  2222111111112223332                        2345778999888777643          35799


Q ss_pred             EEeCCCCceeeeecccCCCeeEeeecCCc--eEEEee-CCCcEEEeecCCCCceeee
Q psy12697        506 IWDAASGQCEQQFSFHSAPALDVDWQSNT--SFASCS-TDQHIHVCKLHSDKPVKSF  559 (602)
Q Consensus       506 iwd~~~~~~~~~~~~~~~~v~~~~~s~~~--~l~~~~-~d~~i~iw~~~~~~~~~~~  559 (602)
                      ++|+.+++.+..+.. ......++|+|||  .++++. .++.|.+||+.+++.+..+
T Consensus       302 VID~~t~~vv~~i~~-g~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~i  357 (373)
T 2mad_H          302 SVTGLVGQTSSQISL-GHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQST  357 (373)
T ss_pred             EEECCCCEEEEEEEC-CCCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEEeee
Confidence            999999999988863 3468899999999  466665 4899999999998887763

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.63  E-value=6.8e-14  Score=148.47  Aligned_cols=242  Identities=12%  Similarity=0.064  Sum_probs=158.0

Q ss_pred             CCcceEEEEEcCCCCEEEEeeCC-----CcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEeeCCCCCeE
Q psy12697        221 HESEVFICAWNPVKDFLASGSGD-----STARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFL  295 (602)
Q Consensus       221 h~~~v~~~~~~~~~~~l~s~~~d-----g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l  295 (602)
                      |...+..++|||||++|+.++.+     ..|++||+.+++...     ....            ...+..++|+|| +.|
T Consensus       161 ~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~-----~~~~------------~~~~~~~~wspD-~~l  222 (741)
T 1yr2_A          161 GATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLA-----DELK------------WVKFSGLAWLGN-DAL  222 (741)
T ss_dssp             --EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEE-----EEEE------------EEESCCCEESTT-SEE
T ss_pred             CCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCC-----ccCC------------CceeccEEEECC-CEE
Confidence            44568899999999999887654     469999999876421     1000            112367899999 988


Q ss_pred             EEEeCCCe--------------EEEEcCCCcc---eeecc--cccCCeEEEEEccCCCEEEEEecCC-----cEEEEeCC
Q psy12697        296 ATGSYDGY--------------ARIWTSDGSL---KSTLG--QHKGPIFALKWNKRGNYILSAGVDK-----TTIIWDAA  351 (602)
Q Consensus       296 ~~~~~dg~--------------i~i~~~~~~~---~~~~~--~~~~~i~~~~~~~~~~~l~~~~~dg-----~i~~wd~~  351 (602)
                      +.+..++.              |++|++.+..   ...+.  .+...+..+.|+|||++|+..+.++     .|.+||+.
T Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~  302 (741)
T 1yr2_A          223 LYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVT  302 (741)
T ss_dssp             EEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEE
T ss_pred             EEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECC
Confidence            88876653              8889876432   12222  3334588999999999998877544     89999998


Q ss_pred             CC--ceeEEeeeccCCeeeeeccCCCeEEEeeC----CCeEEEEEcCCC--ceeeEeccCCCCeEEEEECCCCCEEEEEE
Q psy12697        352 SG--QCEQQFSFHSAPALDVDWQSNTSFASCST----DQHIHVCKLHSD--KPVKSFEGHTNEVNAIKWDPQGLLLASCS  423 (602)
Q Consensus       352 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~i~i~d~~~~--~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  423 (602)
                      ++  ++...+..+........+..++.++..+.    ++.|.+||+.++  +....+..+...+..++++ ++.++++..
T Consensus       303 ~~~~~~~~~l~~~~~~~~~~~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~  381 (741)
T 1yr2_A          303 NGKIGPVTALIPDLKAQWDFVDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-GNRLFASYI  381 (741)
T ss_dssp             TTEECCCEEEECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-BTEEEEEEE
T ss_pred             CCCCcccEEecCCCCceEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-CCEEEEEEE
Confidence            77  31344444444444444444566766665    456999999874  3333444455557778887 667888888


Q ss_pred             CCCeEEEEeCC-CCeeeEeeccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEE----
Q psy12697        424 DDMTLKIWSLD-KDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSA----  498 (602)
Q Consensus       424 ~dg~i~iwd~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~----  498 (602)
                      .|+..+||.++ ++.....+..+                                 +.+.+..+.++|+++.|+..    
T Consensus       382 ~dg~~~l~~~~~~g~~~~~l~~~---------------------------------~~~~v~~~~~s~d~~~l~~~~ss~  428 (741)
T 1yr2_A          382 HDAKSQVLAFDLDGKPAGAVSLP---------------------------------GIGSASGLSGRPGDRHAYLSFSSF  428 (741)
T ss_dssp             ETTEEEEEEEETTSCEEEECBCS---------------------------------SSCEEEEEECCBTCSCEEEEEEET
T ss_pred             ECCEEEEEEEeCCCCceeeccCC---------------------------------CCeEEEEeecCCCCCEEEEEEcCC
Confidence            89987777654 34434333321                                 13345566677777655522    


Q ss_pred             eCCCeEEEEeCCCCce
Q psy12697        499 GVDKTTIIWDAASGQC  514 (602)
Q Consensus       499 ~~dg~i~iwd~~~~~~  514 (602)
                      ...++|++||+.+++.
T Consensus       429 ~~P~~i~~~d~~tg~~  444 (741)
T 1yr2_A          429 TQPATVLALDPATAKT  444 (741)
T ss_dssp             TEEEEEEEEETTTTEE
T ss_pred             CCCCEEEEEECCCCcE
Confidence            3358899999988763

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.62  E-value=5.5e-12  Score=118.25  Aligned_cols=271  Identities=7%  Similarity=0.006  Sum_probs=185.4

Q ss_pred             CceeEEeeCCCCCeEEEEeCCCeEEEEcCCCccee-ecccccCCeEEEEEccCCCEEEEEecCCcEEEEeCCCCceeEEe
Q psy12697        281 KDVTSLDWNNNGSFLATGSYDGYARIWTSDGSLKS-TLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQF  359 (602)
Q Consensus       281 ~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~  359 (602)
                      ..+.++++.++|++.++...++.|..|+..+.... .+......+..+++.++++.+++...++.|..+|.. ++.. .+
T Consensus        20 ~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~-~~   97 (300)
T 2qc5_A           20 SGPYGITSSEDGKVWFTQHKANKISSLDQSGRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGFT-EY   97 (300)
T ss_dssp             CCEEEEEECTTSCEEEEETTTTEEEEECTTSCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEE-EE
T ss_pred             CCcceeeECCCCCEEEEcCCCCeEEEECCCCceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCeE-Ee
Confidence            56889999999998887777899999998844332 122334678999999999877777667889999987 5543 22


Q ss_pred             ee--ccCCeeeeeccCCCeEEEeeC-CCeEEEEEcCCCceee-EeccCCCCeEEEEECCCCCEEEEEECCCeEEEEeCCC
Q psy12697        360 SF--HSAPALDVDWQSNTSFASCST-DQHIHVCKLHSDKPVK-SFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDK  435 (602)
Q Consensus       360 ~~--~~~~~~~~~~~~~~~~~~~~~-~~~i~i~d~~~~~~~~-~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~  435 (602)
                      ..  ....+..+++.+++.+.++.. ++.|..+|.. ++... .+......+..+++++++++.++...++.|..||. +
T Consensus        98 ~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~  175 (300)
T 2qc5_A           98 PLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRITN-T  175 (300)
T ss_dssp             ECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-T
T ss_pred             cCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCEEEEecCCCeEEEECC-C
Confidence            22  335677888888777666554 7889999987 54432 23334567899999999997776666788999987 4


Q ss_pred             CeeeEeeccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCcee
Q psy12697        436 DNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCE  515 (602)
Q Consensus       436 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~~~~~~~  515 (602)
                      ++... +..                                ..+...+..++++++|++.++....+.|.+||. +++..
T Consensus       176 g~~~~-~~~--------------------------------~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~  221 (300)
T 2qc5_A          176 GKLEE-YPL--------------------------------PTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEIS  221 (300)
T ss_dssp             CCEEE-EEC--------------------------------SSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEE
T ss_pred             CcEEE-eeC--------------------------------CCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEE
Confidence            43321 110                                012245677888888887777767788999998 55544


Q ss_pred             ee-ecccCCCeeEeeecCCc-eEEEeeCCCcEEEeecCCCCceeeeecccccceEEEEecCCcEEEEEECCCCCeEEEec
Q psy12697        516 QQ-FSFHSAPALDVDWQSNT-SFASCSTDQHIHVCKLHSDKPVKSFEGHTTGQLVHSYKGTGGIFEVCWNSRGDKVGASA  593 (602)
Q Consensus       516 ~~-~~~~~~~v~~~~~s~~~-~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~  593 (602)
                      .. +..+...+.++++.++| .+++...++.|..|+. +++. ..+...         .....+.+++++++|++.++..
T Consensus       222 ~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~-~~~~~~---------~~~~~~~~i~~~~~g~l~v~~~  290 (300)
T 2qc5_A          222 EYDIPTPNARPHAITAGKNSEIWFTEWGANQIGRITN-DNTI-QEYQLQ---------TENAEPHGITFGKDGSVWFALK  290 (300)
T ss_dssp             EEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECT-TSCE-EEEECC---------STTCCCCCEEECTTSCEEEECS
T ss_pred             EEECCCCCCCceEEEECCCCCEEEeccCCCeEEEECC-CCcE-EEEECC---------ccCCccceeEeCCCCCEEEEcc
Confidence            32 33345668899999999 5555556789999997 3322 122111         0124578899999998766655


Q ss_pred             cCCeEEee
Q psy12697        594 SDGSVFKN  601 (602)
Q Consensus       594 ~dg~v~i~  601 (602)
                       ++..+++
T Consensus       291 -~~i~~~~  297 (300)
T 2qc5_A          291 -CKIGKLN  297 (300)
T ss_dssp             -SEEEEEE
T ss_pred             -CceEEeC
Confidence             3555543

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.60  E-value=1.1e-13  Score=146.85  Aligned_cols=245  Identities=15%  Similarity=0.099  Sum_probs=164.0

Q ss_pred             ccCCceEEEEECCCCCeEEEeeCC-----ceEEEEecCCceeEEEeeccCceEEEEeCCCCCCCCCCCCccccccccccC
Q psy12697        138 RHTEPVYSVAFSPDGKFLASGSFD-----KCVHIWSARTGQLVHSYKGTGGIFEVCWNSRGTPPNPPESMEVDASIEIPQ  212 (602)
Q Consensus       138 ~h~~~V~~~~~s~d~~~l~s~~~d-----~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  212 (602)
                      +|...+..++|||||++||.++.+     ..|++||+.+|+.+....                                 
T Consensus       160 ~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~---------------------------------  206 (741)
T 1yr2_A          160 DGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADEL---------------------------------  206 (741)
T ss_dssp             ---EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEEE---------------------------------
T ss_pred             CCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCccC---------------------------------
Confidence            344578899999999999987654     469999999998753210                                 


Q ss_pred             CcceEeeCCCcceEEEEEcCCCCEEEEeeCCCc--------------EEEEeCCCCCCCCCccceEEEEEEecCCCcccC
Q psy12697        213 SKATKLIGHESEVFICAWNPVKDFLASGSGDST--------------ARIWDMTDSTKKDPKELQIVLRHCISKGGTEVP  278 (602)
Q Consensus       213 ~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~--------------i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (602)
                              +...+..++|+|| +.|+.++.++.              |.+|++.++....    ....    .    ...
T Consensus       207 --------~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~----~lv~----~----~~~  265 (741)
T 1yr2_A          207 --------KWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSAD----QPVF----A----TPE  265 (741)
T ss_dssp             --------EEEESCCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGC----EEEE----C----CTT
T ss_pred             --------CCceeccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhC----EEEe----c----cCC
Confidence                    1111346789999 98888877654              8888886553211    0000    0    011


Q ss_pred             CCCceeEEeeCCCCCeEEEEeCCC-----eEEEEcCCCc--c-eeecccccCCeEEEEEccCCCEEEEEecC----CcEE
Q psy12697        279 SNKDVTSLDWNNNGSFLATGSYDG-----YARIWTSDGS--L-KSTLGQHKGPIFALKWNKRGNYILSAGVD----KTTI  346 (602)
Q Consensus       279 ~~~~i~~~~~~~~~~~l~~~~~dg-----~i~i~~~~~~--~-~~~~~~~~~~i~~~~~~~~~~~l~~~~~d----g~i~  346 (602)
                      +...+..+.|+|||++|+..+.++     .|.+||+.+.  . ...+..+...+.... +|+|+.|+..+.+    +.|.
T Consensus       266 ~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~-~~dg~~l~~~s~~~~~~~~l~  344 (741)
T 1yr2_A          266 LPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDFV-DGVGDQLWFVSGDGAPLKKIV  344 (741)
T ss_dssp             CTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEEE-EEETTEEEEEECTTCTTCEEE
T ss_pred             CCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEEEE-eccCCEEEEEECCCCCCCEEE
Confidence            123478999999999998877544     8999998654  3 445555555555553 4889988877753    4599


Q ss_pred             EEeCCCC--ceeEEeeeccCCeeeeeccCCCeEEEeeCCCeEEEEEcC-CCceeeEecc-CCCCeEEEEECCCCCEEEEE
Q psy12697        347 IWDAASG--QCEQQFSFHSAPALDVDWQSNTSFASCSTDQHIHVCKLH-SDKPVKSFEG-HTNEVNAIKWDPQGLLLASC  422 (602)
Q Consensus       347 ~wd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~-~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~  422 (602)
                      +||+.++  .....+..+...+..+.+..+..+++...++..++|.+. +++....+.. +...+..++++|+++.|+..
T Consensus       345 ~~d~~~~~~~~~~l~~~~~~~l~~~~~~~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~  424 (741)
T 1yr2_A          345 RVDLSGSTPRFDTVVPESKDNLESVGIAGNRLFASYIHDAKSQVLAFDLDGKPAGAVSLPGIGSASGLSGRPGDRHAYLS  424 (741)
T ss_dssp             EEECSSSSCEEEEEECCCSSEEEEEEEEBTEEEEEEEETTEEEEEEEETTSCEEEECBCSSSCEEEEEECCBTCSCEEEE
T ss_pred             EEeCCCCccccEEEecCCCCeEEEEEEECCEEEEEEEECCEEEEEEEeCCCCceeeccCCCCeEEEEeecCCCCCEEEEE
Confidence            9999875  333334444445666777766667788888877776554 4555555654 35678899999998866633


Q ss_pred             E----CCCeEEEEeCCCCe
Q psy12697        423 S----DDMTLKIWSLDKDN  437 (602)
Q Consensus       423 ~----~dg~i~iwd~~~~~  437 (602)
                      .    ..++|++||+.+++
T Consensus       425 ~ss~~~P~~i~~~d~~tg~  443 (741)
T 1yr2_A          425 FSSFTQPATVLALDPATAK  443 (741)
T ss_dssp             EEETTEEEEEEEEETTTTE
T ss_pred             EcCCCCCCEEEEEECCCCc
Confidence            2    34789999998876

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.60  E-value=6e-13  Score=125.53  Aligned_cols=298  Identities=11%  Similarity=0.070  Sum_probs=193.2

Q ss_pred             EEEcCCCCEEEEeeC-----CCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEeeCCCCCeEEEEe---
Q psy12697        228 CAWNPVKDFLASGSG-----DSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFLATGS---  299 (602)
Q Consensus       228 ~~~~~~~~~l~s~~~-----dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~---  299 (602)
                      ....|+++.++....     ++.|.+.|..+.+.......                 ..... ++++|||++++++.   
T Consensus        38 ~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~v-----------------G~~P~-va~spDG~~lyVan~~~   99 (386)
T 3sjl_D           38 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDG-----------------GFLPN-PVVADDGSFIAHASTVF   99 (386)
T ss_dssp             CCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEE-----------------CSSCE-EEECTTSSCEEEEEEEE
T ss_pred             eccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEEC-----------------CCCCc-EEECCCCCEEEEEcccc
Confidence            345688888877765     67899999887654311110                 12224 99999999988876   


Q ss_pred             -------CCCeEEEEcCCC-cceeecccc-------cCCeEEEEEccCCCEEEEEec--CCcEEEEeCCCCceeEEeeec
Q psy12697        300 -------YDGYARIWTSDG-SLKSTLGQH-------KGPIFALKWNKRGNYILSAGV--DKTTIIWDAASGQCEQQFSFH  362 (602)
Q Consensus       300 -------~dg~i~i~~~~~-~~~~~~~~~-------~~~i~~~~~~~~~~~l~~~~~--dg~i~~wd~~~~~~~~~~~~~  362 (602)
                             .++.|.+||... +....+...       ......+.|+|||++++++..  ++.|.++|+.+++.+..+...
T Consensus       100 ~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~  179 (386)
T 3sjl_D          100 SRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVP  179 (386)
T ss_dssp             EETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECC
T ss_pred             cccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECC
Confidence                   367899999874 334443211       123557899999999998864  689999999999999888653


Q ss_pred             cCCeeeeecc-CCCeEEEeeCCCeEEEEEcCC-CceeeEeccCC----CCeE-EEEEC-CCCCEEEEEECCCeEEEEeCC
Q psy12697        363 SAPALDVDWQ-SNTSFASCSTDQHIHVCKLHS-DKPVKSFEGHT----NEVN-AIKWD-PQGLLLASCSDDMTLKIWSLD  434 (602)
Q Consensus       363 ~~~~~~~~~~-~~~~~~~~~~~~~i~i~d~~~-~~~~~~~~~~~----~~i~-~~~~~-~~~~~l~~~~~dg~i~iwd~~  434 (602)
                      ..   ...+. ....+++.+.||.+.+.++.+ ++.......+.    ..+. ...|. ++|++++ .+.+|.|.+.|+.
T Consensus       180 g~---~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~  255 (386)
T 3sjl_D          180 DC---YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLS  255 (386)
T ss_dssp             SE---EEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECT
T ss_pred             Cc---ceeecCCCceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEE-EeCCCEEEEEECC
Confidence            31   11222 235677888899999999876 55432221111    1221 23554 6776555 5668999999987


Q ss_pred             CCee--eEeeccccc-cEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeC----------C
Q psy12697        435 KDNC--VHDLQAHNK-EIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGV----------D  501 (602)
Q Consensus       435 ~~~~--~~~~~~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~----------d  501 (602)
                      +...  ...+..... .+ ...|                        .......++++++++.+.....          .
T Consensus       256 ~~~~~v~~~~~~~~~~~~-~~g~------------------------~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~  310 (386)
T 3sjl_D          256 SGDAKFLPAVEALTEAER-ADGW------------------------RPGGWQQVAYHRALDRIYLLVDQRDEWRHKTAS  310 (386)
T ss_dssp             TSSCEECCCEESSCHHHH-HTTE------------------------EECSSSCEEEETTTTEEEEEEEECCTTCTTSCE
T ss_pred             CCcceeecceeccccccc-cccc------------------------cCCCcceeeECCCCCeEEEEeccccccccCCCC
Confidence            6532  221110000 00 0001                        1223335677888888877643          2


Q ss_pred             CeEEEEeCCCCceeeeecccCCCeeEeeecCCc--eEEEe-eCCCcEEEeecCCCCceeeeecccccceEEEEecCCcEE
Q psy12697        502 KTTIIWDAASGQCEQQFSFHSAPALDVDWQSNT--SFASC-STDQHIHVCKLHSDKPVKSFEGHTTGQLVHSYKGTGGIF  578 (602)
Q Consensus       502 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~--~l~~~-~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  578 (602)
                      ..|.+.|+.+++.+..+... ..+.++++++|+  +|+++ ..++.|.++|..+++.+.+++..            +...
T Consensus       311 ~~V~viD~~t~kv~~~i~vg-~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~~~i~~~------------~~p~  377 (386)
T 3sjl_D          311 RFVVVLDAKTGERLAKFEMG-HEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQL------------GHGP  377 (386)
T ss_dssp             EEEEEEETTTCCEEEEEEEE-EEECEEEECSSSSCEEEEEETTTTEEEEEETTTCCEEEEECCC------------CSSC
T ss_pred             CEEEEEECCCCeEEEEEECC-CCcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcEEEEecCC------------CCCc
Confidence            57999999999999888743 468899999998  45554 45899999998888777766533            3445


Q ss_pred             EEEECCC
Q psy12697        579 EVCWNSR  585 (602)
Q Consensus       579 ~l~~spd  585 (602)
                      .|.+++|
T Consensus       378 ~l~~s~d  384 (386)
T 3sjl_D          378 QVITTAD  384 (386)
T ss_dssp             CEEEECC
T ss_pred             eeEECCc
Confidence            6666666

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.60  E-value=1.6e-11  Score=115.04  Aligned_cols=277  Identities=9%  Similarity=-0.024  Sum_probs=188.9

Q ss_pred             CCCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEeeCCCCCeEEEEe
Q psy12697        220 GHESEVFICAWNPVKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFLATGS  299 (602)
Q Consensus       220 ~h~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  299 (602)
                      .....+.++++.++++..++...++.|.+|+.. +...      .   ... .     .....+.++++.+++.+.++..
T Consensus        17 ~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~------~---~~~-~-----~~~~~~~~i~~~~~g~l~v~~~   80 (300)
T 2qc5_A           17 IPDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIK------E---FEV-P-----TPDAKVMCLIVSSLGDIWFTEN   80 (300)
T ss_dssp             STTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEE------E---EEC-S-----STTCCEEEEEECTTSCEEEEET
T ss_pred             CCCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceE------E---EEC-C-----CCCCcceeEEECCCCCEEEEec
Confidence            345678899999999988877778999999976 3211      0   000 0     1135688999999998877777


Q ss_pred             CCCeEEEEcCCCcceee-cccccCCeEEEEEccCCCEEEEEecCCcEEEEeCCCCceeEE-eeeccCCeeeeeccCCCeE
Q psy12697        300 YDGYARIWTSDGSLKST-LGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQ-FSFHSAPALDVDWQSNTSF  377 (602)
Q Consensus       300 ~dg~i~i~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~  377 (602)
                      .++.|..||..+..... .......+..+++.++++.+++...++.|..+|.. ++.... +......+..+.+.+++.+
T Consensus        81 ~~~~v~~~d~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l  159 (300)
T 2qc5_A           81 GANKIGKLSKKGGFTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNAL  159 (300)
T ss_dssp             TTTEEEEECTTSCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSE
T ss_pred             CCCeEEEECCCCCeEEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCE
Confidence            78899999988554322 22234678999999999887777668899999987 554422 2223456778888887766


Q ss_pred             EEeeC-CCeEEEEEcCCCceee-EeccCCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeeeEeeccccccEEEEEEC
Q psy12697        378 ASCST-DQHIHVCKLHSDKPVK-SFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHDLQAHNKEIYTIKWS  455 (602)
Q Consensus       378 ~~~~~-~~~i~i~d~~~~~~~~-~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~  455 (602)
                      .++.. ++.|..++. +++... ....+...+..++++++|++.++....+.|.+||. +++......            
T Consensus       160 ~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~------------  225 (300)
T 2qc5_A          160 WFTENQNNSIGRITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEISEYDI------------  225 (300)
T ss_dssp             EEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEEC------------
T ss_pred             EEEecCCCeEEEECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEEEEC------------
Confidence            66554 678999998 554433 22234457899999999987777767788999997 333222100            


Q ss_pred             CCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCceee-eecccCCCeeEeeecCCc
Q psy12697        456 PTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQ-QFSFHSAPALDVDWQSNT  534 (602)
Q Consensus       456 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~~~v~~~~~s~~~  534 (602)
                                           ..+...+.+++++++|++.++...++.|..||. +++... .+......+.++++.++|
T Consensus       226 ---------------------~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g  283 (300)
T 2qc5_A          226 ---------------------PTPNARPHAITAGKNSEIWFTEWGANQIGRITN-DNTIQEYQLQTENAEPHGITFGKDG  283 (300)
T ss_dssp             ---------------------SSTTCCEEEEEECSTTCEEEEETTTTEEEEECT-TSCEEEEECCSTTCCCCCEEECTTS
T ss_pred             ---------------------CCCCCCceEEEECCCCCEEEeccCCCeEEEECC-CCcEEEEECCccCCccceeEeCCCC
Confidence                                 012345678888889887777666789999998 454332 223334568899999999


Q ss_pred             eEEEeeCCCcEEEeec
Q psy12697        535 SFASCSTDQHIHVCKL  550 (602)
Q Consensus       535 ~l~~~~~d~~i~iw~~  550 (602)
                      .|..++.. .|..++.
T Consensus       284 ~l~v~~~~-~i~~~~p  298 (300)
T 2qc5_A          284 SVWFALKC-KIGKLNL  298 (300)
T ss_dssp             CEEEECSS-EEEEEEE
T ss_pred             CEEEEccC-ceEEeCC
Confidence            44444444 6766663

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.60  E-value=1.4e-12  Score=123.25  Aligned_cols=230  Identities=9%  Similarity=0.049  Sum_probs=156.3

Q ss_pred             cCCeEEEEEccCCCEEEE-------EecCCcEEEEeCCCCceeEEee----eccCCeeeeeccCC-CeEEEeeCCCeEEE
Q psy12697        321 KGPIFALKWNKRGNYILS-------AGVDKTTIIWDAASGQCEQQFS----FHSAPALDVDWQSN-TSFASCSTDQHIHV  388 (602)
Q Consensus       321 ~~~i~~~~~~~~~~~l~~-------~~~dg~i~~wd~~~~~~~~~~~----~~~~~~~~~~~~~~-~~~~~~~~~~~i~i  388 (602)
                      -....+++|+++++.+++       ...++.|..||..+++......    .+...+..+.+.++ +.+.++...+.|.+
T Consensus        17 ~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~~~~l~~   96 (314)
T 1pjx_A           17 IPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRLGLLV   96 (314)
T ss_dssp             CTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTTEEEE
T ss_pred             CCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEECCCCEEE
Confidence            345679999999987777       5678899999988877643221    13356788999998 88887777778999


Q ss_pred             EEcCCCceeeE-ecc----CCCCeEEEEECCCCCEEEEEECC---------------CeEEEEeCCCCeeeEeecccccc
Q psy12697        389 CKLHSDKPVKS-FEG----HTNEVNAIKWDPQGLLLASCSDD---------------MTLKIWSLDKDNCVHDLQAHNKE  448 (602)
Q Consensus       389 ~d~~~~~~~~~-~~~----~~~~i~~~~~~~~~~~l~~~~~d---------------g~i~iwd~~~~~~~~~~~~~~~~  448 (602)
                      ||.. ++.... ...    ....+.+++++|+|+++++...+               +.|..||.. ++..... .    
T Consensus        97 ~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~-~----  169 (314)
T 1pjx_A           97 VQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVD-T----  169 (314)
T ss_dssp             EETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEE-E----
T ss_pred             EeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEec-c----
Confidence            9988 654332 221    12358899999999888777654               456666654 3322111 0    


Q ss_pred             EEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEc----cCCCEEEEE-eCCCeEEEEeCC-CCc-----eeee
Q psy12697        449 IYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWN----KRGNYILSA-GVDKTTIIWDAA-SGQ-----CEQQ  517 (602)
Q Consensus       449 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s----~~~~~l~s~-~~dg~i~iwd~~-~~~-----~~~~  517 (602)
                                                    +......++++    |+++.|..+ ..++.|.+||.. +++     ....
T Consensus       170 ------------------------------~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~  219 (314)
T 1pjx_A          170 ------------------------------AFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGH  219 (314)
T ss_dssp             ------------------------------EESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEE
T ss_pred             ------------------------------CCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEE
Confidence                                          11234567888    888765554 567899999986 443     2233


Q ss_pred             ecccC-CCeeEeeecCCc-eEEEeeCCCcEEEeecCCCCceeeeecccccceEEEEecCCcEEEEEECCCCCeEEEecc-
Q psy12697        518 FSFHS-APALDVDWQSNT-SFASCSTDQHIHVCKLHSDKPVKSFEGHTTGQLVHSYKGTGGIFEVCWNSRGDKVGASAS-  594 (602)
Q Consensus       518 ~~~~~-~~v~~~~~s~~~-~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~-  594 (602)
                      +..+. ..+..++++++| .+++...++.|.+||..+++.+..+..+           ...+.+++|+|||+.|++++. 
T Consensus       220 ~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~~~~-----------~~~~~~i~~~~dg~~l~v~~~~  288 (314)
T 1pjx_A          220 IPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCP-----------FEKPSNLHFKPQTKTIFVTEHE  288 (314)
T ss_dssp             CCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECS-----------SSCEEEEEECTTSSEEEEEETT
T ss_pred             CCCCCCCCCCceEECCCCCEEEEEcCCCEEEEEcCCCCcEeEEEeCC-----------CCCceeEEECCCCCEEEEEeCC
Confidence            33343 567889999999 6666667889999998766655444322           256899999999996665554 


Q ss_pred             CCeE
Q psy12697        595 DGSV  598 (602)
Q Consensus       595 dg~v  598 (602)
                      ++.|
T Consensus       289 ~~~l  292 (314)
T 1pjx_A          289 NNAV  292 (314)
T ss_dssp             TTEE
T ss_pred             CCeE
Confidence            3443

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.58  E-value=1.3e-12  Score=123.48  Aligned_cols=249  Identities=12%  Similarity=0.131  Sum_probs=167.8

Q ss_pred             eccCCceEEEEECCCCCeEEE-------eeCCceEEEEecCCceeEEEeeccCceEEEEeCCCCCCCCCCCCcccccccc
Q psy12697        137 TRHTEPVYSVAFSPDGKFLAS-------GSFDKCVHIWSARTGQLVHSYKGTGGIFEVCWNSRGTPPNPPESMEVDASIE  209 (602)
Q Consensus       137 ~~h~~~V~~~~~s~d~~~l~s-------~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (602)
                      ...-....+++|+++|+++++       +..++.|.+||..+++.... ..                             
T Consensus        14 ~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~-~~-----------------------------   63 (314)
T 1pjx_A           14 TEDIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVI-CK-----------------------------   63 (314)
T ss_dssp             ECCCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEE-EC-----------------------------
T ss_pred             hccCCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEE-Ee-----------------------------
Confidence            344456789999999998888       67889999999888775321 10                             


Q ss_pred             ccCCcceEeeCCCcceEEEEEcCC-CCEEEEeeCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEee
Q psy12697        210 IPQSKATKLIGHESEVFICAWNPV-KDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDW  288 (602)
Q Consensus       210 ~~~~~~~~l~~h~~~v~~~~~~~~-~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  288 (602)
                            ....++...+..++++++ ++++++. ..+.|.+||.. ++.....          ... ........+.++++
T Consensus        64 ------~~~~~~~~~~~~i~~~~~~g~l~v~~-~~~~l~~~d~~-g~~~~~~----------~~~-~~~~~~~~~~~i~~  124 (314)
T 1pjx_A           64 ------PEVNGYGGIPAGCQCDRDANQLFVAD-MRLGLLVVQTD-GTFEEIA----------KKD-SEGRRMQGCNDCAF  124 (314)
T ss_dssp             ------CEETTEECCEEEEEECSSSSEEEEEE-TTTEEEEEETT-SCEEECC----------SBC-TTSCBCBCCCEEEE
T ss_pred             ------cccCCCCCCCceEEEecCCCcEEEEE-CCCCEEEEeCC-CCEEEEE----------ecc-CCCccccCCcCEEE
Confidence                  001124456889999999 6655544 44478889887 4321000          000 00011245789999


Q ss_pred             CCCCCeEEEEeCC---------------CeEEEEcCCCcceeecccccCCeEEEEEc----cCCCEEEEE-ecCCcEEEE
Q psy12697        289 NNNGSFLATGSYD---------------GYARIWTSDGSLKSTLGQHKGPIFALKWN----KRGNYILSA-GVDKTTIIW  348 (602)
Q Consensus       289 ~~~~~~l~~~~~d---------------g~i~i~~~~~~~~~~~~~~~~~i~~~~~~----~~~~~l~~~-~~dg~i~~w  348 (602)
                      +++|+++++...+               +.|..|+.++... .+..+......++|+    |+++.++.+ ..++.|.+|
T Consensus       125 d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~-~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~  203 (314)
T 1pjx_A          125 DYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTDGQMI-QVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSY  203 (314)
T ss_dssp             CTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTTSCEE-EEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEE
T ss_pred             CCCCCEEEEecCcccccccccccccCCCCeEEEECCCCCEE-EeccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEE
Confidence            9999887776655               5788888765433 333344567889999    999766555 467899999


Q ss_pred             eCC-CCcee-----EEeeecc-CCeeeeeccCCCeEEEee-CCCeEEEEEcCCCceeeEeccCCCCeEEEEECCCCCEEE
Q psy12697        349 DAA-SGQCE-----QQFSFHS-APALDVDWQSNTSFASCS-TDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLA  420 (602)
Q Consensus       349 d~~-~~~~~-----~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~  420 (602)
                      |.. +++..     ..+..+. ..+..+++.+++.+.++. .++.|.+||..+++.+..+..+...+.+++++|+++.|+
T Consensus       204 ~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~  283 (314)
T 1pjx_A          204 DIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIF  283 (314)
T ss_dssp             EEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEE
T ss_pred             ECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCCEEEEEcCCCCcEeEEEeCCCCCceeEEECCCCCEEE
Confidence            976 44321     1222222 456778888887766654 678999999987777777777777899999999999555


Q ss_pred             EE-ECCCeEEEEeCCC
Q psy12697        421 SC-SDDMTLKIWSLDK  435 (602)
Q Consensus       421 ~~-~~dg~i~iwd~~~  435 (602)
                      ++ ..++.|..|++..
T Consensus       284 v~~~~~~~l~~~~~~~  299 (314)
T 1pjx_A          284 VTEHENNAVWKFEWQR  299 (314)
T ss_dssp             EEETTTTEEEEEECSS
T ss_pred             EEeCCCCeEEEEeCCC
Confidence            44 4567899999864

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=99.56  E-value=3.2e-13  Score=128.73  Aligned_cols=300  Identities=14%  Similarity=0.026  Sum_probs=195.5

Q ss_pred             EEEECCCCCeEEEeeCCceEEEEecCCceeEEEeeccCceEEEEeCCCCCCCCCCCCccccccccccCCcceEeeCCCcc
Q psy12697        145 SVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKGTGGIFEVCWNSRGTPPNPPESMEVDASIEIPQSKATKLIGHESE  224 (602)
Q Consensus       145 ~~~~s~d~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~  224 (602)
                      +..+..++. |..++.++.|..|| .+++.+..+..                                        +...
T Consensus        24 ~~~~d~~g~-l~v~t~~~~l~~~d-~~g~~~~~~~~----------------------------------------~~~~   61 (330)
T 3hxj_A           24 SPILAKNGT-IYLGSSNKNLYAIN-TDGSVKWFFKS----------------------------------------GEII   61 (330)
T ss_dssp             CCEECTTSC-EECSSTTTTTEEEC-TTSCEEESSCG----------------------------------------GGEE
T ss_pred             CceEccCCe-EEEEcCCCEEEEEC-CCCcEEEEEec----------------------------------------CCCc
Confidence            344545554 56677788899999 88877543221                                        1223


Q ss_pred             eEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEeeCCCCCeEEEEeCCCeE
Q psy12697        225 VFICAWNPVKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFLATGSYDGYA  304 (602)
Q Consensus       225 v~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i  304 (602)
                      +.++...+++. +..++.+  +..+|. +++........                ........+.  +..+.+++.++.+
T Consensus        62 ~~~~~~~~~g~-l~v~t~~--l~~~d~-~g~~~~~~~~~----------------~~~~~~~~~~--~~~l~v~t~~~~l  119 (330)
T 3hxj_A           62 ECRPSIGKDGT-IYFGSDK--VYAINP-DGTEKWRFDTK----------------KAIVSDFTIF--EDILYVTSMDGHL  119 (330)
T ss_dssp             EECCEETTTTE-ECCSSCE--EEEECC-CGGGGGGSCC---------------------CCEEEE--TTEEEEECTTSEE
T ss_pred             ccceEEecCCc-EEEecCc--EEEECC-CCcEEEEEECC----------------CCcccCceEE--CCEEEEEecCCEE
Confidence            44555555554 4445444  777775 33322111111                0111122222  4567888889999


Q ss_pred             EEEcCCCcceeecccccCCeEEEEEccCCCEEEEEecCCcEEEEeCCCCceeEEeeeccCCeeeeeccCCCeEEEeeCCC
Q psy12697        305 RIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTSFASCSTDQ  384 (602)
Q Consensus       305 ~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  384 (602)
                      ..+|..+............+.++...+++. +..++.++.+..+|.. ++....+......+.++...+++.+.+++  +
T Consensus       120 ~~~d~~g~~~~~~~~~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~~g~l~v~t--~  195 (330)
T 3hxj_A          120 YAINTDGTEKWRFKTKKAIYATPIVSEDGT-IYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAASIGKDGTIYFGS--D  195 (330)
T ss_dssp             EEECTTSCEEEEEECSSCCCSCCEECTTSC-EEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTCCEEEES--S
T ss_pred             EEEcCCCCEEEEEcCCCceeeeeEEcCCCE-EEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeEEcCCCEEEEEe--C
Confidence            999988665555554555566667777776 6667778999999998 88777777666667777777777777777  8


Q ss_pred             eEEEEEcCCCceeeEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeeeEeeccccccEEEEEECCCCCCCCCC
Q psy12697        385 HIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHDLQAHNKEIYTIKWSPTGPETSNP  464 (602)
Q Consensus       385 ~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  464 (602)
                      .+..+| .+++...........+.++..+++|. |..++.++.|..+|. +++.+..+......                
T Consensus       196 ~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~~gl~~~~~-~g~~~~~~~~~~~~----------------  256 (330)
T 3hxj_A          196 KVYAIN-PDGTEKWNFYAGYWTVTRPAISEDGT-IYVTSLDGHLYAINP-DGTEKWRFKTGKRI----------------  256 (330)
T ss_dssp             SEEEEC-TTSCEEEEECCSSCCCSCCEECTTSC-EEEEETTTEEEEECT-TSCEEEEEECSSCC----------------
T ss_pred             EEEEEC-CCCcEEEEEccCCcceeceEECCCCe-EEEEcCCCeEEEECC-CCCEeEEeeCCCCc----------------
Confidence            899999 77777766666666788889988875 555667788888874 45544443321111                


Q ss_pred             CcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeeecccCCCeeEeeecCCceEEEeeCCCc
Q psy12697        465 NMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTSFASCSTDQH  544 (602)
Q Consensus       465 ~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~l~~~~~d~~  544 (602)
                                        +..+.+.+++ .|..++.+|.|..+|. +++.+..+......+.++...+++.|..++.+|.
T Consensus       257 ------------------~~~~~~~~~g-~l~v~t~~ggl~~~d~-~g~~~~~~~~~~~~~~~~~~d~~g~l~~gt~~G~  316 (330)
T 3hxj_A          257 ------------------ESSPVIGNTD-TIYFGSYDGHLYAINP-DGTEKWNFETGSWIIATPVIDENGTIYFGTRNGK  316 (330)
T ss_dssp             ------------------CSCCEECTTS-CEEEECTTCEEEEECT-TSCEEEEEECSSCCCSCCEECTTCCEEEECTTSC
T ss_pred             ------------------cccceEcCCC-eEEEecCCCCEEEECC-CCcEEEEEEcCCccccceEEcCCCEEEEEcCCCe
Confidence                              1122333344 4666778888999996 6877777665666677888888888888999999


Q ss_pred             EEEeecC
Q psy12697        545 IHVCKLH  551 (602)
Q Consensus       545 i~iw~~~  551 (602)
                      +++...+
T Consensus       317 ~~~~~~~  323 (330)
T 3hxj_A          317 FYALFNL  323 (330)
T ss_dssp             EEEEEC-
T ss_pred             EEEEecc
Confidence            9988754

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=99.55  E-value=6.3e-13  Score=126.65  Aligned_cols=290  Identities=12%  Similarity=0.051  Sum_probs=190.9

Q ss_pred             CEEEEeeCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEeeCCCCCeEEEEeCCCeEEEEcCCCcce
Q psy12697        235 DFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFLATGSYDGYARIWTSDGSLK  314 (602)
Q Consensus       235 ~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~  314 (602)
                      ..+..++.++.|..|| .+++.......                ....+.++...+++. +.+++.+  +..+|.+++..
T Consensus        31 g~l~v~t~~~~l~~~d-~~g~~~~~~~~----------------~~~~~~~~~~~~~g~-l~v~t~~--l~~~d~~g~~~   90 (330)
T 3hxj_A           31 GTIYLGSSNKNLYAIN-TDGSVKWFFKS----------------GEIIECRPSIGKDGT-IYFGSDK--VYAINPDGTEK   90 (330)
T ss_dssp             SCEECSSTTTTTEEEC-TTSCEEESSCG----------------GGEEEECCEETTTTE-ECCSSCE--EEEECCCGGGG
T ss_pred             CeEEEEcCCCEEEEEC-CCCcEEEEEec----------------CCCcccceEEecCCc-EEEecCc--EEEECCCCcEE
Confidence            3566777788888998 66553221111                123346666766665 5555554  88888766554


Q ss_pred             eecccccCCeEEEEEccCCCEEEEEecCCcEEEEeCCCCceeEEeeeccCCeeeeeccCCCeEEEeeCCCeEEEEEcCCC
Q psy12697        315 STLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTSFASCSTDQHIHVCKLHSD  394 (602)
Q Consensus       315 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~  394 (602)
                      ..............+.  +..+..++.++.+..+|.. ++...........+..+...+++.+.+++.++.|..+|.. +
T Consensus        91 ~~~~~~~~~~~~~~~~--~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g~l~vgt~~~~l~~~d~~-g  166 (330)
T 3hxj_A           91 WRFDTKKAIVSDFTIF--EDILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDGTIYVGSNDNYLYAINPD-G  166 (330)
T ss_dssp             GGSCC-----CCEEEE--TTEEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTSCEEEECTTSEEEEECTT-S
T ss_pred             EEEECCCCcccCceEE--CCEEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCCEEEEEcCCCEEEEECCC-C
Confidence            4443333222233333  4567888889999999988 7777766665555666777778889999999999999998 7


Q ss_pred             ceeeEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeeeEeeccccccEEEEEECCCCCCCCCCCcceeeeeee
Q psy12697        395 KPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKS  474 (602)
Q Consensus       395 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~  474 (602)
                      +....+......+.++.+++++.+.+..   +.|..+| .+++.........                            
T Consensus       167 ~~~~~~~~~~~~~~~~~~d~~g~l~v~t---~~l~~~d-~~g~~~~~~~~~~----------------------------  214 (330)
T 3hxj_A          167 TEKWRFKTNDAITSAASIGKDGTIYFGS---DKVYAIN-PDGTEKWNFYAGY----------------------------  214 (330)
T ss_dssp             CEEEEEECSSCCCSCCEECTTCCEEEES---SSEEEEC-TTSCEEEEECCSS----------------------------
T ss_pred             CEeEEEecCCCceeeeEEcCCCEEEEEe---CEEEEEC-CCCcEEEEEccCC----------------------------
Confidence            7776666666667788888888755544   7799999 6666555443222                            


Q ss_pred             ccCCccCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeeecccCCCeeEeeecCCceEEEeeCCCcEEEeecCCCC
Q psy12697        475 TLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTSFASCSTDQHIHVCKLHSDK  554 (602)
Q Consensus       475 ~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~l~~~~~d~~i~iw~~~~~~  554 (602)
                            ..+.++...++|. |..++.++.|..+|. +++.+..+......+..+.+.+++.|..++.+|.|..+|. +++
T Consensus       215 ------~~~~~~~~~~~g~-l~v~t~~~gl~~~~~-~g~~~~~~~~~~~~~~~~~~~~~g~l~v~t~~ggl~~~d~-~g~  285 (330)
T 3hxj_A          215 ------WTVTRPAISEDGT-IYVTSLDGHLYAINP-DGTEKWRFKTGKRIESSPVIGNTDTIYFGSYDGHLYAINP-DGT  285 (330)
T ss_dssp             ------CCCSCCEECTTSC-EEEEETTTEEEEECT-TSCEEEEEECSSCCCSCCEECTTSCEEEECTTCEEEEECT-TSC
T ss_pred             ------cceeceEECCCCe-EEEEcCCCeEEEECC-CCCEeEEeeCCCCccccceEcCCCeEEEecCCCCEEEECC-CCc
Confidence                  2344555566665 555666788888884 5666666665544455667777778888888989999995 555


Q ss_pred             ceeeeecccccceEEEEecCCcEEEEEECCCCCeEEEeccCCeEEee
Q psy12697        555 PVKSFEGHTTGQLVHSYKGTGGIFEVCWNSRGDKVGASASDGSVFKN  601 (602)
Q Consensus       555 ~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~v~i~  601 (602)
                      .+..+...           ...+.++..+++|+ |.+++.+|.+++.
T Consensus       286 ~~~~~~~~-----------~~~~~~~~~d~~g~-l~~gt~~G~~~~~  320 (330)
T 3hxj_A          286 EKWNFETG-----------SWIIATPVIDENGT-IYFGTRNGKFYAL  320 (330)
T ss_dssp             EEEEEECS-----------SCCCSCCEECTTCC-EEEECTTSCEEEE
T ss_pred             EEEEEEcC-----------CccccceEEcCCCE-EEEEcCCCeEEEE
Confidence            44443321           24466777778886 5668889988763

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.51  E-value=1.2e-11  Score=120.63  Aligned_cols=247  Identities=11%  Similarity=0.023  Sum_probs=166.3

Q ss_pred             CceeEEeeCCCCCeEEEEeCCCeEEEEcCCCcceeecccccCCeEEEEEccCCCEEEEEecCC--cEEEEeCCCCceeEE
Q psy12697        281 KDVTSLDWNNNGSFLATGSYDGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDK--TTIIWDAASGQCEQQ  358 (602)
Q Consensus       281 ~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg--~i~~wd~~~~~~~~~  358 (602)
                      .....++|+++++++++...++.|+.||.++..+..+........ ++|+++++.|+++..++  .|.+++...+.....
T Consensus       131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~~  209 (409)
T 3hrp_A          131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPTR  209 (409)
T ss_dssp             CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETCCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEEE
T ss_pred             CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccCCCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCceeEE
Confidence            457899999999988887778999999998655544433333334 99999999999888766  788888876654433


Q ss_pred             e----eeccCCeeeeeccC-CCeEEEeeCCCeEEEEEcCCCceeeE----eccCCCCe--EEEEECCC-CCEEEEEECCC
Q psy12697        359 F----SFHSAPALDVDWQS-NTSFASCSTDQHIHVCKLHSDKPVKS----FEGHTNEV--NAIKWDPQ-GLLLASCSDDM  426 (602)
Q Consensus       359 ~----~~~~~~~~~~~~~~-~~~~~~~~~~~~i~i~d~~~~~~~~~----~~~~~~~i--~~~~~~~~-~~~l~~~~~dg  426 (602)
                      +    ......+..+++.+ ++.++++..++.|+.||..++.....    ..++...-  ..++|+|+ +.++++-..++
T Consensus       210 ~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~  289 (409)
T 3hrp_A          210 IGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLS  289 (409)
T ss_dssp             EEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTTT
T ss_pred             eeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCCCC
Confidence            3    21345677888998 68888888889999999987763322    22222222  39999995 55666666778


Q ss_pred             eEEEEeCCCCeeeEeeccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEe-CCCeEE
Q psy12697        427 TLKIWSLDKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAG-VDKTTI  505 (602)
Q Consensus       427 ~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~-~dg~i~  505 (602)
                      .|+.|+....  +..+.++..          ...    ....     ......-.....++++|+|+++++-. .++.|+
T Consensus       290 ~I~~~~~~g~--~~~~~g~~~----------~~g----~~dg-----~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~  348 (409)
T 3hrp_A          290 SVYKITPDGE--CEWFCGSAT----------QKT----VQDG-----LREEALFAQPNGMTVDEDGNFYIVDGFKGYCLR  348 (409)
T ss_dssp             EEEEECTTCC--EEEEEECTT----------CCS----CBCE-----EGGGCBCSSEEEEEECTTCCEEEEETTTTCEEE
T ss_pred             EEEEEecCCC--EEEEEeCCC----------CCC----cCCC-----cccccEeCCCeEEEEeCCCCEEEEeCCCCCEEE
Confidence            9999987643  222221110          000    0000     00011123467899999999888877 889999


Q ss_pred             EEeCCCCceeeeeccc---------------CCCeeEeeecCCc-eEEEeeCCCcEEEeec
Q psy12697        506 IWDAASGQCEQQFSFH---------------SAPALDVDWQSNT-SFASCSTDQHIHVCKL  550 (602)
Q Consensus       506 iwd~~~~~~~~~~~~~---------------~~~v~~~~~s~~~-~l~~~~~d~~i~iw~~  550 (602)
                      .||+.++.. ..+.++               -.....+++++++ .+++-..+++|+.+++
T Consensus       349 ~~~~~~G~v-~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~  408 (409)
T 3hrp_A          349 KLDILDGYV-STVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV  408 (409)
T ss_dssp             EEETTTTEE-EEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred             EEECCCCEE-EEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence            999877764 333333               1347889999999 6666677788887764

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=99.51  E-value=3.6e-11  Score=116.66  Aligned_cols=307  Identities=10%  Similarity=0.003  Sum_probs=192.4

Q ss_pred             CCCeEEEeeCCceEEEEecCCceeEEEeeccCceEEEEeCCCCCCCCCCCCccccccccccCCcceEeeCCCcceEEEEE
Q psy12697        151 DGKFLASGSFDKCVHIWSARTGQLVHSYKGTGGIFEVCWNSRGTPPNPPESMEVDASIEIPQSKATKLIGHESEVFICAW  230 (602)
Q Consensus       151 d~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~  230 (602)
                      ++..++.++.++.|..+|..+|+.+..+.......   +                            .......+.. ..
T Consensus        52 ~~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~---~----------------------------~~~~~~~~~~-~~   99 (376)
T 3q7m_A           52 ADNVVYAADRAGLVKALNADDGKEIWSVSLAEKDG---W----------------------------FSKEPALLSG-GV   99 (376)
T ss_dssp             ETTEEEEECTTSEEEEEETTTCCEEEEEECCC------C----------------------------CSCCCCCEEE-EE
T ss_pred             ECCEEEEEcCCCeEEEEEccCCceeeeecCccccc---c----------------------------ccccCccccc-Cc
Confidence            46778888889999999999999886654321000   0                            0000111111 11


Q ss_pred             cCCCCEEEEeeCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCce-eEEeeCCCCCeEEEEeCCCeEEEEcC
Q psy12697        231 NPVKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDV-TSLDWNNNGSFLATGSYDGYARIWTS  309 (602)
Q Consensus       231 ~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i-~~~~~~~~~~~l~~~~~dg~i~i~~~  309 (602)
                      ..++..++.++.++.|..+|..+++........                 ..+ .....  .+..+++++.++.+..+|.
T Consensus       100 ~~~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~-----------------~~~~~~p~~--~~~~v~v~~~~g~l~~~d~  160 (376)
T 3q7m_A          100 TVSGGHVYIGSEKAQVYALNTSDGTVAWQTKVA-----------------GEALSRPVV--SDGLVLIHTSNGQLQALNE  160 (376)
T ss_dssp             EEETTEEEEEETTSEEEEEETTTCCEEEEEECS-----------------SCCCSCCEE--ETTEEEEECTTSEEEEEET
T ss_pred             eEeCCEEEEEcCCCEEEEEECCCCCEEEEEeCC-----------------CceEcCCEE--ECCEEEEEcCCCeEEEEEC
Confidence            224567888889999999999887643211110                 011 11111  2447888889999999997


Q ss_pred             C-CcceeecccccCCe-----EEEEEccCCCEEEEEecCCcEEEEeCCCCceeEEeeeccCC----------eeeeeccC
Q psy12697        310 D-GSLKSTLGQHKGPI-----FALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAP----------ALDVDWQS  373 (602)
Q Consensus       310 ~-~~~~~~~~~~~~~i-----~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~----------~~~~~~~~  373 (602)
                      . ++............     ......  +..++.++.++.+..+|..+++.+.........          +.......
T Consensus       161 ~tG~~~W~~~~~~~~~~~~~~~~~~~~--~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~  238 (376)
T 3q7m_A          161 ADGAVKWTVNLDMPSLSLRGESAPTTA--FGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVV  238 (376)
T ss_dssp             TTCCEEEEEECCC-----CCCCCCEEE--TTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEE
T ss_pred             CCCcEEEEEeCCCCceeecCCCCcEEE--CCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEE
Confidence            5 55554443221110     111222  456788888999999999999988776543211          11111122


Q ss_pred             CCeEEEeeCCCeEEEEEcCCCceeeEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeeeEeeccccccEEEEE
Q psy12697        374 NTSFASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHDLQAHNKEIYTIK  453 (602)
Q Consensus       374 ~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~  453 (602)
                      ++.+++++.++.+..+|..+++.+.....  .....+..  ++..++.++.++.|..+|..+++.+.........     
T Consensus       239 ~~~v~~~~~~g~l~~~d~~tG~~~w~~~~--~~~~~~~~--~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~-----  309 (376)
T 3q7m_A          239 NGVVFALAYNGNLTALDLRSGQIMWKREL--GSVNDFIV--DGNRIYLVDQNDRVMALTIDGGVTLWTQSDLLHR-----  309 (376)
T ss_dssp             TTEEEEECTTSCEEEEETTTCCEEEEECC--CCEEEEEE--ETTEEEEEETTCCEEEEETTTCCEEEEECTTTTS-----
T ss_pred             CCEEEEEecCcEEEEEECCCCcEEeeccC--CCCCCceE--ECCEEEEEcCCCeEEEEECCCCcEEEeecccCCC-----
Confidence            57788888899999999999988766542  23444444  3667888889999999999998876655421110     


Q ss_pred             ECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeeecccCCCeeEeeecCC
Q psy12697        454 WSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSN  533 (602)
Q Consensus       454 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~  533 (602)
                                                  .+.....  .+..|+.++.+|.|.++|..+|+.+.........+.......+
T Consensus       310 ----------------------------~~~~~~~--~~~~l~v~~~~g~l~~~d~~tG~~~~~~~~~~~~~~~~~~~~~  359 (376)
T 3q7m_A          310 ----------------------------LLTSPVL--YNGNLVVGDSEGYLHWINVEDGRFVAQQKVDSSGFQTEPVAAD  359 (376)
T ss_dssp             ----------------------------CCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEEECCTTCBCSCCEEET
T ss_pred             ----------------------------cccCCEE--ECCEEEEEeCCCeEEEEECCCCcEEEEEecCCCcceeCCEEEC
Confidence                                        0000111  2456888889999999999999988777654444433222235


Q ss_pred             ceEEEeeCCCcEEEee
Q psy12697        534 TSFASCSTDQHIHVCK  549 (602)
Q Consensus       534 ~~l~~~~~d~~i~iw~  549 (602)
                      +.|+.++.+|.|+.|+
T Consensus       360 ~~l~v~~~~G~l~~~~  375 (376)
T 3q7m_A          360 GKLLIQAKDGTVYSIT  375 (376)
T ss_dssp             TEEEEEBTTSCEEEEE
T ss_pred             CEEEEEeCCCEEEEEe
Confidence            5888899999999887

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.51  E-value=2.1e-12  Score=124.30  Aligned_cols=282  Identities=10%  Similarity=0.054  Sum_probs=185.3

Q ss_pred             CCCCEEEEeeC-C----CcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEeeCCCCCeEEEEe-------
Q psy12697        232 PVKDFLASGSG-D----STARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFLATGS-------  299 (602)
Q Consensus       232 ~~~~~l~s~~~-d----g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-------  299 (602)
                      ++++.+++... +    +.|.+.|..+.+.......                 ...- .++++|||++++++.       
T Consensus        82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~v-----------------G~~P-gia~SpDgk~lyVan~~~~~~~  143 (426)
T 3c75_H           82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDG-----------------GFLP-HPVAAEDGSFFAQASTVFERIA  143 (426)
T ss_dssp             CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEE-----------------CSSC-EEEECTTSSCEEEEEEEEEETT
T ss_pred             CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEEC-----------------CCCC-ceEECCCCCEEEEEeccccccc
Confidence            35555555544 2    6899999987754321111                 1223 899999999998886       


Q ss_pred             ---CCCeEEEEcCCC-cceeecccc-------cCCeEEEEEccCCCEEEEEec--CCcEEEEeCCCCceeEEeeeccCCe
Q psy12697        300 ---YDGYARIWTSDG-SLKSTLGQH-------KGPIFALKWNKRGNYILSAGV--DKTTIIWDAASGQCEQQFSFHSAPA  366 (602)
Q Consensus       300 ---~dg~i~i~~~~~-~~~~~~~~~-------~~~i~~~~~~~~~~~l~~~~~--dg~i~~wd~~~~~~~~~~~~~~~~~  366 (602)
                         .++.|.++|... +....+.-.       ......+.|+|||++++++..  ++.|.+.|+.+++.+..+.....  
T Consensus       144 ~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~--  221 (426)
T 3c75_H          144 RGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDC--  221 (426)
T ss_dssp             EEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE--
T ss_pred             cCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCc--
Confidence               367899999863 444443211       123457899999999998874  57899999999999888765332  


Q ss_pred             eeeeccCCCeEEEeeCCCeEEEEEcCCCceeeE----eccCCCC-eEEEEECCCCCEEEEEECCCeEEEEeCCCCeeeE-
Q psy12697        367 LDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKS----FEGHTNE-VNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVH-  440 (602)
Q Consensus       367 ~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~----~~~~~~~-i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~-  440 (602)
                      ..+.......+++.+.||.+.+.+..+++....    +.....+ ...+.+.+++..++..+..+.|.+.|+....... 
T Consensus       222 ~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~  301 (426)
T 3c75_H          222 YHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFR  301 (426)
T ss_dssp             EEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEEC
T ss_pred             eeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEe
Confidence            112112235677778888888888865554422    1111111 1235689999888888888999999986543211 


Q ss_pred             -eecccc-ccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeC----------CCeEEEEe
Q psy12697        441 -DLQAHN-KEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGV----------DKTTIIWD  508 (602)
Q Consensus       441 -~~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~----------dg~i~iwd  508 (602)
                       .+.... ..+                         ...........++++|+++.+++...          ++.|.+.|
T Consensus       302 ~~~~~~~~~~i-------------------------~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID  356 (426)
T 3c75_H          302 APIEALTEAER-------------------------ADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLN  356 (426)
T ss_dssp             CCEESSCTTTG-------------------------GGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEE
T ss_pred             eeeeecccccc-------------------------ccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEE
Confidence             110000 000                         00001112224688999887776542          35799999


Q ss_pred             CCCCceeeeecccCCCeeEeeecCCc--eEEEee-CCCcEEEeecCCCCceeee
Q psy12697        509 AASGQCEQQFSFHSAPALDVDWQSNT--SFASCS-TDQHIHVCKLHSDKPVKSF  559 (602)
Q Consensus       509 ~~~~~~~~~~~~~~~~v~~~~~s~~~--~l~~~~-~d~~i~iw~~~~~~~~~~~  559 (602)
                      +.+++.+.++... .....+.|+||+  ++++.. .++.|.++|+.+++.+.++
T Consensus       357 ~~T~kvv~~I~vg-~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~kvv~tI  409 (426)
T 3c75_H          357 AETGERINKIELG-HEIDSINVSQDAEPLLYALSAGTQTLHIYDAATGEELRSV  409 (426)
T ss_dssp             TTTCCEEEEEEEE-EEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred             CCCCeEEEEEECC-CCcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCCEEEEe
Confidence            9999999888743 357899999998  566666 5899999999998888776

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=99.50  E-value=2.7e-09  Score=114.23  Aligned_cols=412  Identities=9%  Similarity=0.057  Sum_probs=249.1

Q ss_pred             ceeeeecccceeeeeeecc-CCc-eEEEEECCCCCeEEEeeCCceEEEEecCCceeEEEeeccCceEEEEeCCCCCCCCC
Q psy12697        121 TLPLWDVERGECLNTLTRH-TEP-VYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKGTGGIFEVCWNSRGTPPNP  198 (602)
Q Consensus       121 ~i~vwd~~~~~~~~~l~~h-~~~-V~~~~~s~d~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (602)
                      .|..||.++++......++ ... |.++...+++++.+ ++.++-|..||..+++......                   
T Consensus       151 gl~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lwi-gt~~~Gl~~~~~~~~~~~~~~~-------------------  210 (795)
T 4a2l_A          151 GLIMFDIKESKFIDDSFSTAMHKTIASTLYRQGDQIYI-GTSTDGLYTYSITQKTFEKVIP-------------------  210 (795)
T ss_dssp             EEEEEETTTTEEECSSSCHHHHTCCEEEEEEETTEEEE-EESSSCEEEEETTTCCEEECC--------------------
T ss_pred             ceEEEECCCCEEEeccCCCCCCcceEEEEECCCCCEEE-EECCCCEEEEeCCCCeEEEecC-------------------
Confidence            3666776655433221111 123 88898888887666 5555558888887765432100                   


Q ss_pred             CCCccccccccccCCcceEeeCCCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCccceEEEEEEecCC-Cccc
Q psy12697        199 PESMEVDASIEIPQSKATKLIGHESEVFICAWNPVKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKG-GTEV  277 (602)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  277 (602)
                                          ..+...|.++...+++.+.+ ++.++-+..|+..++...          ...... ....
T Consensus       211 --------------------~~~~~~i~~i~~d~~g~lwi-gt~~~Gl~~~~~~~~~~~----------~~~~~~~~~~~  259 (795)
T 4a2l_A          211 --------------------ILGTKQIQAILQQSPTRIWV-ATEGAGLFLINPKTKEIK----------NYLHSPSNPKS  259 (795)
T ss_dssp             -----------------------CCCEEEEEEEETTEEEE-EEBSSCEEEEETTTTEEE----------EECCCTTCTTS
T ss_pred             --------------------CCCCCeeEEEEEcCCCCEEE-EECCCCeEEEeCCCCeEE----------EeecCCCCccc
Confidence                                01234577887777766444 444444888887654211          000000 0001


Q ss_pred             CCCCceeEEeeCCCCCeEEEEeCCCeEEEEcCCCcceeeccc--------ccCCeEEEEEccCCCEEEEEecCCcEEEEe
Q psy12697        278 PSNKDVTSLDWNNNGSFLATGSYDGYARIWTSDGSLKSTLGQ--------HKGPIFALKWNKRGNYILSAGVDKTTIIWD  349 (602)
Q Consensus       278 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~--------~~~~i~~~~~~~~~~~l~~~~~dg~i~~wd  349 (602)
                      .....|.++...++|.+. +|+.+| |.+|+........+..        ....|.++...++|. |..|+.++-|..|+
T Consensus       260 l~~~~i~~i~~d~~g~lW-igt~~G-l~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~-lWigt~~~Gl~~~~  336 (795)
T 4a2l_A          260 ISSNYIRSLAMDSQNRLW-IGTFND-LNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGG-MWLGTYFGGLNYYH  336 (795)
T ss_dssp             CSCSBEEEEEECTTSCEE-EEESSC-EEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSC-EEEEESSSCEEEEC
T ss_pred             cCCCeEEEEEEcCCCCEE-EEeCCh-hheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcC-EEEEECCCCeEEeC
Confidence            123679999999888754 455554 7888876544433321        235699999999887 55566777788888


Q ss_pred             CCCCceeEEee------eccCCeeeeeccCCCeEEEeeCCCeEEEEEcCCCceeeEec--------cCCCCeEEEEECCC
Q psy12697        350 AASGQCEQQFS------FHSAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFE--------GHTNEVNAIKWDPQ  415 (602)
Q Consensus       350 ~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~--------~~~~~i~~~~~~~~  415 (602)
                      ..++.......      .....|.++...+++.+.+|+.++-|..|+..+++......        .....|.++..+++
T Consensus       337 ~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~~g~lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~  416 (795)
T 4a2l_A          337 PIRNRFKNIRNIPYKNSLSDNVVSCIVEDKDKNLWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEK  416 (795)
T ss_dssp             GGGGSSEEECCCTTSSSCSCSSEEEEEECTTSCEEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETT
T ss_pred             CCcccceEEcCCCCCCCCCCCeeEEEEECCCCCEEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCC
Confidence            76554322111      12345788888888899999999889999988765433221        12357999999999


Q ss_pred             CCEEEEEECCCeEEEEeCCCCeeeEeec----cccccEEEEEECCCCCCCCCCCcceeeeeee------cc-------CC
Q psy12697        416 GLLLASCSDDMTLKIWSLDKDNCVHDLQ----AHNKEIYTIKWSPTGPETSNPNMSLIFILKS------TL-------GQ  478 (602)
Q Consensus       416 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~----~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~------~~-------~~  478 (602)
                      ++.|..|+.++-|.+||..+++......    .....|.++...+++....... ..+..+..      .+       .-
T Consensus       417 g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~  495 (795)
T 4a2l_A          417 KSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLWLGTL-SALVRFNPEQRSFTTIEKEKDGTPV  495 (795)
T ss_dssp             TTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEEEES-SCEEEEETTTTEEEECCBCTTCCBC
T ss_pred             CCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEEEec-CceeEEeCCCCeEEEcccccccccc
Confidence            8857777877779999988765433221    2345788888877665322221 12221110      00       11


Q ss_pred             ccCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeeec-------ccCCCeeEeeecCCceEEEeeCCCcEEEeecC
Q psy12697        479 HKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFS-------FHSAPALDVDWQSNTSFASCSTDQHIHVCKLH  551 (602)
Q Consensus       479 ~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-------~~~~~v~~~~~s~~~~l~~~~~d~~i~iw~~~  551 (602)
                      ....|.++...++|++.+... + -|..||..+++.  .+.       .....|.++...++|.|..++.. .+..||..
T Consensus       496 ~~~~i~~i~~d~~g~lWigt~-~-Gl~~~~~~~~~~--~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~~-Gl~~~d~~  570 (795)
T 4a2l_A          496 VSKQITTLFRDSHKRLWIGGE-E-GLSVFKQEGLDI--QKASILPVSNVTKLFTNCIYEASNGIIWVGTRE-GFYCFNEK  570 (795)
T ss_dssp             CCCCEEEEEECTTCCEEEEES-S-CEEEEEEETTEE--EECCCSCSCGGGGSCEEEEEECTTSCEEEEESS-CEEEEETT
T ss_pred             CCceEEEEEECCCCCEEEEeC-C-ceEEEeCCCCeE--EEecCCCCCCCCCCeeEEEEECCCCCEEEEeCC-CceeECCC
Confidence            236789999999998766554 4 488999877654  222       23456889999999955545554 68888876


Q ss_pred             CCCceeeeecccccceEEEEecCCcEEEEEECCCCCeEEEeccCCeEEee
Q psy12697        552 SDKPVKSFEGHTTGQLVHSYKGTGGIFEVCWNSRGDKVGASASDGSVFKN  601 (602)
Q Consensus       552 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~v~i~  601 (602)
                      +++.. .+.. ..|-      ....|.++..+++|++.+++ .+|..+++
T Consensus       571 ~~~~~-~~~~-~~gl------~~~~i~~i~~d~~g~lWi~t-~~Gl~~~~  611 (795)
T 4a2l_A          571 DKQIK-RYNT-TNGL------PNNVVYGILEDSFGRLWLST-NRGISCFN  611 (795)
T ss_dssp             TTEEE-EECG-GGTC------SCSCEEEEEECTTSCEEEEE-TTEEEEEE
T ss_pred             CCcEE-EeCC-CCCC------chhheEEEEECCCCCEEEEc-CCceEEEc
Confidence            54322 2211 1110      12458888899888766544 67766654

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.50  E-value=3.3e-11  Score=112.51  Aligned_cols=226  Identities=13%  Similarity=0.147  Sum_probs=149.8

Q ss_pred             cCCeEEEEEccCCCE-EEEEecCCcEEEEeCCCCceeEEeeeccCCeeeeeccCCCeEEEeeCCCeEEEEEcCCCceeeE
Q psy12697        321 KGPIFALKWNKRGNY-ILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKS  399 (602)
Q Consensus       321 ~~~i~~~~~~~~~~~-l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~  399 (602)
                      ..-..+..|++++.. +++...++.|..||..+++.. .+. ....+..+++.+++.++++. ++.|.+||..+++....
T Consensus        12 ~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~-~~~~~~~i~~~~dG~l~v~~-~~~l~~~d~~~g~~~~~   88 (297)
T 3g4e_A           12 CRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQ-RVT-MDAPVSSVALRQSGGYVATI-GTKFCALNWKEQSAVVL   88 (297)
T ss_dssp             CSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEE-EEE-CSSCEEEEEEBTTSSEEEEE-TTEEEEEETTTTEEEEE
T ss_pred             CccccCCeEECCCCEEEEEECCCCEEEEEECCCCcEE-EEe-CCCceEEEEECCCCCEEEEE-CCeEEEEECCCCcEEEE
Confidence            344568899996554 455556789999999887652 232 34678889999998877776 67899999988764332


Q ss_pred             ecc----CCCCeEEEEECCCCCEEEEEECC---------CeEEEEeCCCCeeeEeeccccccEEEEEECCCCCCCCCCCc
Q psy12697        400 FEG----HTNEVNAIKWDPQGLLLASCSDD---------MTLKIWSLDKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNM  466 (602)
Q Consensus       400 ~~~----~~~~i~~~~~~~~~~~l~~~~~d---------g~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  466 (602)
                      ...    ....+..++++|+|+++++...+         ..-.+|.+........+..                      
T Consensus        89 ~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~----------------------  146 (297)
T 3g4e_A           89 ATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFD----------------------  146 (297)
T ss_dssp             EECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEE----------------------
T ss_pred             EecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEEEee----------------------
Confidence            221    12357889999999977655322         2223443332111111100                      


Q ss_pred             ceeeeeeeccCCccCCeEEEEEccCCCEEE-EEeCCCeEEEEeC--CCCce-----eeeecccCCCeeEeeecCCc-eEE
Q psy12697        467 SLIFILKSTLGQHKGPIFALKWNKRGNYIL-SAGVDKTTIIWDA--ASGQC-----EQQFSFHSAPALDVDWQSNT-SFA  537 (602)
Q Consensus       467 ~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~-s~~~dg~i~iwd~--~~~~~-----~~~~~~~~~~v~~~~~s~~~-~l~  537 (602)
                                  +....+.++|+||++.|+ +.+.++.|.+||+  .++..     ...+..+......+++.++| .++
T Consensus       147 ------------~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwv  214 (297)
T 3g4e_A          147 ------------QVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWV  214 (297)
T ss_dssp             ------------EESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEE
T ss_pred             ------------ccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEE
Confidence                        122346788999998765 4455788999987  45543     22333344567889999999 666


Q ss_pred             EeeCCCcEEEeecCCCCceeeeecccccceEEEEecCCcEEEEEEC-CCCCeEEEecc
Q psy12697        538 SCSTDQHIHVCKLHSDKPVKSFEGHTTGQLVHSYKGTGGIFEVCWN-SRGDKVGASAS  594 (602)
Q Consensus       538 ~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s-pdg~~l~~~~~  594 (602)
                      +....+.|.+||..+++.+..+....           ..+++++|. ||++.|++++.
T Consensus       215 a~~~~~~v~~~d~~tG~~~~~i~~p~-----------~~~t~~~f~g~d~~~L~vt~~  261 (297)
T 3g4e_A          215 ACYNGGRVIRLDPVTGKRLQTVKLPV-----------DKTTSCCFGGKNYSEMYVTCA  261 (297)
T ss_dssp             EEETTTEEEEECTTTCCEEEEEECSS-----------SBEEEEEEESGGGCEEEEEEB
T ss_pred             EEcCCCEEEEEcCCCceEEEEEECCC-----------CCceEEEEeCCCCCEEEEEcC
Confidence            66677889999987777666554332           568999998 89988877665

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.49  E-value=2.3e-11  Score=116.99  Aligned_cols=279  Identities=11%  Similarity=0.080  Sum_probs=178.8

Q ss_pred             CCCCeEEEeeC-C----ceEEEEecCCceeEEEeeccCceEEEEeCCCCCCCCCCCCccccccccccCCcceEeeCCCcc
Q psy12697        150 PDGKFLASGSF-D----KCVHIWSARTGQLVHSYKGTGGIFEVCWNSRGTPPNPPESMEVDASIEIPQSKATKLIGHESE  224 (602)
Q Consensus       150 ~d~~~l~s~~~-d----~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~  224 (602)
                      ++++.++.... +    +.|.+.|..+++.+.+++.                                       + ..+
T Consensus        82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~v---------------------------------------G-~~P  121 (426)
T 3c75_H           82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDG---------------------------------------G-FLP  121 (426)
T ss_dssp             CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEE---------------------------------------C-SSC
T ss_pred             CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEEC---------------------------------------C-CCC
Confidence            45665555443 2    7999999999999876652                                       1 223


Q ss_pred             eEEEEEcCCCCEEEEee----------CCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEeeCCCCCe
Q psy12697        225 VFICAWNPVKDFLASGS----------GDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSF  294 (602)
Q Consensus       225 v~~~~~~~~~~~l~s~~----------~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  294 (602)
                        .++++||+++|+++.          .++.|.++|..+.+.......        . .............+.++|||++
T Consensus       122 --gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v--------~-g~~r~~~g~~P~~~~~spDGk~  190 (426)
T 3c75_H          122 --HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIEL--------P-DAPRFLVGTYQWMNALTPDNKN  190 (426)
T ss_dssp             --EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEE--------T-TCCCCCBSCCGGGSEECTTSSE
T ss_pred             --ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEEC--------C-CccccccCCCcceEEEcCCCCE
Confidence              689999999888775          467899999988754321110        0 0000000123567899999999


Q ss_pred             EEEEeC--CCeEEEEcCCC-cceeecccccCCeEEEEEccCC-CEEEEEecCCcEEEEeCCCCceeEE----eeeccCCe
Q psy12697        295 LATGSY--DGYARIWTSDG-SLKSTLGQHKGPIFALKWNKRG-NYILSAGVDKTTIIWDAASGQCEQQ----FSFHSAPA  366 (602)
Q Consensus       295 l~~~~~--dg~i~i~~~~~-~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~~wd~~~~~~~~~----~~~~~~~~  366 (602)
                      ++++..  ++.|.+.|... +....+... + .  ....|++ +.+++.+.||.+.+.+..+++....    +.....++
T Consensus       191 lyV~n~~~~~~VsVID~~t~kvv~~I~v~-g-~--~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~  266 (426)
T 3c75_H          191 LLFYQFSPAPAVGVVDLEGKTFDRMLDVP-D-C--YHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELL  266 (426)
T ss_dssp             EEEEECSSSCEEEEEETTTTEEEEEEECC-S-E--EEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCB
T ss_pred             EEEEecCCCCeEEEEECCCCeEEEEEEcC-C-c--eeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCce
Confidence            999874  57899999874 444444321 1 1  2233433 5566677788888888866655432    12222221


Q ss_pred             -eeeeccCC-CeEEEeeCCCeEEEEEcCCCcee--eEecc----------CCCCeEEEEECCCCCEEEEEEC--------
Q psy12697        367 -LDVDWQSN-TSFASCSTDQHIHVCKLHSDKPV--KSFEG----------HTNEVNAIKWDPQGLLLASCSD--------  424 (602)
Q Consensus       367 -~~~~~~~~-~~~~~~~~~~~i~i~d~~~~~~~--~~~~~----------~~~~i~~~~~~~~~~~l~~~~~--------  424 (602)
                       ..+.+.++ ..++.....+.+.+.|.......  ..+..          .......++++|+++.+++...        
T Consensus       267 ~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk  346 (426)
T 3c75_H          267 INHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHK  346 (426)
T ss_dssp             CSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTT
T ss_pred             eeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEeccccccccc
Confidence             12334554 44556667889999998765421  11110          0111223789999888777642        


Q ss_pred             --CCeEEEEeCCCCeeeEeeccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCC-EEEEEe-C
Q psy12697        425 --DMTLKIWSLDKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGN-YILSAG-V  500 (602)
Q Consensus       425 --dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~-~l~s~~-~  500 (602)
                        ++.|.++|+.+.+.+.++....                                   ....+.|+|||+ ++++.. .
T Consensus       347 ~~s~~VsVID~~T~kvv~~I~vg~-----------------------------------~P~gia~spDg~~~lyv~n~~  391 (426)
T 3c75_H          347 AASRFVVVLNAETGERINKIELGH-----------------------------------EIDSINVSQDAEPLLYALSAG  391 (426)
T ss_dssp             SCEEEEEEEETTTCCEEEEEEEEE-----------------------------------EECEEEECCSSSCEEEEEETT
T ss_pred             CCCCEEEEEECCCCeEEEEEECCC-----------------------------------CcCeEEEccCCCEEEEEEcCC
Confidence              3579999999998888774321                                   245678888998 888877 5


Q ss_pred             CCeEEEEeCCCCceeeee
Q psy12697        501 DKTTIIWDAASGQCEQQF  518 (602)
Q Consensus       501 dg~i~iwd~~~~~~~~~~  518 (602)
                      ++.|.++|+.+++.+.++
T Consensus       392 s~~VsVID~~t~kvv~tI  409 (426)
T 3c75_H          392 TQTLHIYDAATGEELRSV  409 (426)
T ss_dssp             TTEEEEEETTTCCEEEEE
T ss_pred             CCeEEEEECCCCCEEEEe
Confidence            899999999999999887

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.48  E-value=3.5e-11  Score=112.28  Aligned_cols=227  Identities=11%  Similarity=0.105  Sum_probs=152.7

Q ss_pred             ceeEEeeCCC-CCeEEEEeCCCeEEEEcCCCcceeecccccCCeEEEEEccCCCEEEEEecCCcEEEEeCCCCceeEEee
Q psy12697        282 DVTSLDWNNN-GSFLATGSYDGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFS  360 (602)
Q Consensus       282 ~i~~~~~~~~-~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~  360 (602)
                      -..+..|+++ +.++++...++.|..||..+.....+ .....+.+++++++|+++++ . ++.|.+||..+++......
T Consensus        14 ~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~~~-~~~~~~~~i~~~~dG~l~v~-~-~~~l~~~d~~~g~~~~~~~   90 (297)
T 3g4e_A           14 CGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQRV-TMDAPVSSVALRQSGGYVAT-I-GTKFCALNWKEQSAVVLAT   90 (297)
T ss_dssp             BEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEE-ECSSCEEEEEEBTTSSEEEE-E-TTEEEEEETTTTEEEEEEE
T ss_pred             cccCCeEECCCCEEEEEECCCCEEEEEECCCCcEEEE-eCCCceEEEEECCCCCEEEE-E-CCeEEEEECCCCcEEEEEe
Confidence            3567889995 45566666789999999886554433 24567999999999995544 4 5689999998876544332


Q ss_pred             ec----cCCeeeeeccCCCeEEEeeCC----------CeEEEEEcCCCceeeEeccCCCCeEEEEECCCCCEEEE-EECC
Q psy12697        361 FH----SAPALDVDWQSNTSFASCSTD----------QHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLAS-CSDD  425 (602)
Q Consensus       361 ~~----~~~~~~~~~~~~~~~~~~~~~----------~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~-~~~d  425 (602)
                      ..    ...+..+.+.+++.+.+++..          ..-.+|.+........+..+....+.++|+|+++.|+. .+.+
T Consensus        91 ~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~pngi~~spdg~~lyv~~~~~  170 (297)
T 3g4e_A           91 VDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFDQVDISNGLDWSLDHKIFYYIDSLS  170 (297)
T ss_dssp             CCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEEEESBEEEEEECTTSCEEEEEEGGG
T ss_pred             cCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEEEeeccccccceEEcCCCCEEEEecCCC
Confidence            21    234677888998887776521          22344444332223333334455789999999987755 4557


Q ss_pred             CeEEEEeCC--CCeeeEeeccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCCCe
Q psy12697        426 MTLKIWSLD--KDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKT  503 (602)
Q Consensus       426 g~i~iwd~~--~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~  503 (602)
                      +.|.+|++.  ++..... +       .+                     ..+..+......++++++|++.++...++.
T Consensus       171 ~~i~~~~~d~~~G~~~~~-~-------~~---------------------~~~~~~~~~p~g~~~d~~G~lwva~~~~~~  221 (297)
T 3g4e_A          171 YSVDAFDYDLQTGQISNR-R-------SV---------------------YKLEKEEQIPDGMCIDAEGKLWVACYNGGR  221 (297)
T ss_dssp             TEEEEEEECTTTCCEEEE-E-------EE---------------------EECCGGGCEEEEEEEBTTSCEEEEEETTTE
T ss_pred             CcEEEEeccCCCCcccCc-E-------EE---------------------EECCCCCCCCCeeEECCCCCEEEEEcCCCE
Confidence            889999873  4432100 0       00                     001112345667889999998888888889


Q ss_pred             EEEEeCCCCceeeeecccCCCeeEeeec-CCc-eEEEee
Q psy12697        504 TIIWDAASGQCEQQFSFHSAPALDVDWQ-SNT-SFASCS  540 (602)
Q Consensus       504 i~iwd~~~~~~~~~~~~~~~~v~~~~~s-~~~-~l~~~~  540 (602)
                      |.+||..+++.+..+..+...+++++|. |++ .|.+++
T Consensus       222 v~~~d~~tG~~~~~i~~p~~~~t~~~f~g~d~~~L~vt~  260 (297)
T 3g4e_A          222 VIRLDPVTGKRLQTVKLPVDKTTSCCFGGKNYSEMYVTC  260 (297)
T ss_dssp             EEEECTTTCCEEEEEECSSSBEEEEEEESGGGCEEEEEE
T ss_pred             EEEEcCCCceEEEEEECCCCCceEEEEeCCCCCEEEEEc
Confidence            9999999999999888877789999998 787 444433

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.48  E-value=1.9e-11  Score=114.67  Aligned_cols=240  Identities=12%  Similarity=0.059  Sum_probs=160.7

Q ss_pred             eeeeeeeccCCceEEEEECCCCC-eEEEeeCCceEEEEecCCceeEEEeeccCceEEEEeCCCCCCCCCCCCcccccccc
Q psy12697        131 ECLNTLTRHTEPVYSVAFSPDGK-FLASGSFDKCVHIWSARTGQLVHSYKGTGGIFEVCWNSRGTPPNPPESMEVDASIE  209 (602)
Q Consensus       131 ~~~~~l~~h~~~V~~~~~s~d~~-~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (602)
                      ..+..+..+........|+|+|+ ++++...++.|..|+. +++. ..                                
T Consensus        35 ~~~~~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~~-~~--------------------------------   80 (305)
T 3dr2_A           35 ARLLTLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGTV-DV--------------------------------   80 (305)
T ss_dssp             CCCEEEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSCE-EE--------------------------------
T ss_pred             CceEEEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCCE-EE--------------------------------
Confidence            44555666667778899999998 6667777899999987 4442 11                                


Q ss_pred             ccCCcceEeeCCCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEeeC
Q psy12697        210 IPQSKATKLIGHESEVFICAWNPVKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWN  289 (602)
Q Consensus       210 ~~~~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  289 (602)
                              +..+...+..++++++|+++++...++.|..|+.+ +..      .......   .+   .....+..+++.
T Consensus        81 --------~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~~------~~~~~~~---~~---~~~~~~~~i~~d  139 (305)
T 3dr2_A           81 --------LLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-GQA------HLLVGRY---AG---KRLNSPNDLIVA  139 (305)
T ss_dssp             --------EEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCE------EEEECEE---TT---EECSCCCCEEEC
T ss_pred             --------EeCCCCccceeeECCCCCEEEEECCCCEEEEECCC-CCE------EEEEecc---CC---CccCCCCCEEEC
Confidence                    12244568899999999977766666889999875 321      1111000   00   012346789999


Q ss_pred             CCCCeEEE----EeC-------------CCeEEEEcCCCcceeecccccCCeEEEEEccCCCEEEEEecC------CcEE
Q psy12697        290 NNGSFLAT----GSY-------------DGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVD------KTTI  346 (602)
Q Consensus       290 ~~~~~l~~----~~~-------------dg~i~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d------g~i~  346 (602)
                      |+|++.++    |..             .+.|..++........+. .......++|+|+++.|+.+...      +.|.
T Consensus       140 ~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~-~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~  218 (305)
T 3dr2_A          140 RDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA-DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEIT  218 (305)
T ss_dssp             TTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE-EESSEEEEEECTTSSEEEEEECCC---CCCEEE
T ss_pred             CCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe-cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEE
Confidence            99998876    432             356888887533333333 45567899999999988877665      6899


Q ss_pred             EEeCCCCceeE--Ee-eeccCCeeeeeccCCCeEEEeeCCCeEEEEEcCCCceeeEeccCCCCeEEEEECCCCCEEEEEE
Q psy12697        347 IWDAASGQCEQ--QF-SFHSAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCS  423 (602)
Q Consensus       347 ~wd~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  423 (602)
                      +|++..+....  .+ .........+.+.+++.+.++..+ .|.+|+. .++.+..+..+. .+.+++|+|+++.|..++
T Consensus       219 ~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~lwv~~~~-gv~~~~~-~g~~~~~~~~~~-~~~~~~f~~d~~~L~it~  295 (305)
T 3dr2_A          219 AFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWLWSSSGT-GVCVFDS-DGQLLGHIPTPG-TASNCTFDQAQQRLFITG  295 (305)
T ss_dssp             EEEEETTEEEEEEEEECCSSSCCCSEEECTTSCEEECCSS-EEEEECT-TSCEEEEEECSS-CCCEEEECTTSCEEEEEE
T ss_pred             EEEecCCCccCCeEEEECCCCCCCeEEECCCCCEEEecCC-cEEEECC-CCCEEEEEECCC-ceeEEEEeCCCCEEEEEc
Confidence            99987654211  11 112334456778888888777754 5999998 566666666554 588999999999998888


Q ss_pred             CCCeEE
Q psy12697        424 DDMTLK  429 (602)
Q Consensus       424 ~dg~i~  429 (602)
                      .++..+
T Consensus       296 ~~~l~~  301 (305)
T 3dr2_A          296 GPCLWM  301 (305)
T ss_dssp             TTEEEE
T ss_pred             CCeEEE
Confidence            765333

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.47  E-value=7.1e-11  Score=115.06  Aligned_cols=236  Identities=10%  Similarity=0.017  Sum_probs=158.9

Q ss_pred             CceEEEEECCCCCeEEEeeCCceEEEEecCCceeEEEeeccCceEEEEeCCCCCCCCCCCCccccccccccCCcceEeeC
Q psy12697        141 EPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKGTGGIFEVCWNSRGTPPNPPESMEVDASIEIPQSKATKLIG  220 (602)
Q Consensus       141 ~~V~~~~~s~d~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  220 (602)
                      .....|+|+++++++++...++.|++||..++.......                                        .
T Consensus       131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~----------------------------------------~  170 (409)
T 3hrp_A          131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHP----------------------------------------G  170 (409)
T ss_dssp             CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEE----------------------------------------T
T ss_pred             CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeec----------------------------------------c
Confidence            468899999999988888888999999998877653321                                        1


Q ss_pred             CCcceEEEEEcCCCCEEEEeeCCC--cEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEeeCCCCCeEEEE
Q psy12697        221 HESEVFICAWNPVKDFLASGSGDS--TARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFLATG  298 (602)
Q Consensus       221 h~~~v~~~~~~~~~~~l~s~~~dg--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~  298 (602)
                       ..... ++|+|+++.|+++..++  .|.+|+...+...     . .....      .......+.+++++|++..|+++
T Consensus       171 -~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~-----~-~~g~~------~~~~~~~p~~iav~p~~g~lyv~  236 (409)
T 3hrp_A          171 -FKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAP-----T-RIGQL------GSTFSGKIGAVALDETEEWLYFV  236 (409)
T ss_dssp             -CCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCE-----E-EEEEC------CTTSCSCCCBCEECTTSSEEEEE
T ss_pred             -CCCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCcee-----E-Eeeec------cchhcCCcEEEEEeCCCCeEEEE
Confidence             11223 88999999998888766  6777777544321     0 00000      00023567889999955556667


Q ss_pred             eCCCeEEEEcCCCcceeec-----ccccCCe--EEEEEccC-CCEEEEEecCCcEEEEeCCCCceeEEeeec--------
Q psy12697        299 SYDGYARIWTSDGSLKSTL-----GQHKGPI--FALKWNKR-GNYILSAGVDKTTIIWDAASGQCEQQFSFH--------  362 (602)
Q Consensus       299 ~~dg~i~i~~~~~~~~~~~-----~~~~~~i--~~~~~~~~-~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~--------  362 (602)
                      ..++.|+.|+..+.....+     ..+...-  ..++|+|+ +..+++-..++.|..|+....  ...+...        
T Consensus       237 d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~--~~~~~g~~~~~g~~d  314 (409)
T 3hrp_A          237 DSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGE--CEWFCGSATQKTVQD  314 (409)
T ss_dssp             CTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCC--EEEEEECTTCCSCBC
T ss_pred             ECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCC--EEEEEeCCCCCCcCC
Confidence            7788999999875544333     1122222  39999995 555555566789999987643  2222222        


Q ss_pred             -------cCCeeeeeccCCCeEEEee--CCCeEEEEEcCCCceeeEeccC---------------CCCeEEEEECCCCCE
Q psy12697        363 -------SAPALDVDWQSNTSFASCS--TDQHIHVCKLHSDKPVKSFEGH---------------TNEVNAIKWDPQGLL  418 (602)
Q Consensus       363 -------~~~~~~~~~~~~~~~~~~~--~~~~i~i~d~~~~~~~~~~~~~---------------~~~i~~~~~~~~~~~  418 (602)
                             -.....+++.+++.++++.  .++.|+.|++.++.. ..+.++               -.....++++|+|.+
T Consensus       315 g~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v-~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~l  393 (409)
T 3hrp_A          315 GLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYV-STVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGY  393 (409)
T ss_dssp             EEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEE-EEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEE
T ss_pred             CcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEE-EEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCE
Confidence                   1346778888887655554  578999999877653 444333               245889999999888


Q ss_pred             EEEEECCCeEEEEeC
Q psy12697        419 LASCSDDMTLKIWSL  433 (602)
Q Consensus       419 l~~~~~dg~i~iwd~  433 (602)
                      +++-..+++|+.+++
T Consensus       394 yVad~~n~~Ir~i~~  408 (409)
T 3hrp_A          394 WIAEAWGKAIRKYAV  408 (409)
T ss_dssp             EEEESTTCEEEEEEE
T ss_pred             EEEECCCCeEEEEEe
Confidence            888888888988765

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=99.47  E-value=2.3e-08  Score=107.02  Aligned_cols=418  Identities=11%  Similarity=0.054  Sum_probs=249.3

Q ss_pred             ceeeeecccceeeeee-eccCCceEEEEECCCCCeEEEeeCCceEEEEecCCceeEEEeeccCceEEEEeCCCCCCCCCC
Q psy12697        121 TLPLWDVERGECLNTL-TRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKGTGGIFEVCWNSRGTPPNPP  199 (602)
Q Consensus       121 ~i~vwd~~~~~~~~~l-~~h~~~V~~~~~s~d~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (602)
                      -|..||..+++..... ..+...|.++...++|.+.+.. .++-+..||..+++.........          .      
T Consensus       194 Gl~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lwigt-~~~Gl~~~~~~~~~~~~~~~~~~----------~------  256 (795)
T 4a2l_A          194 GLYTYSITQKTFEKVIPILGTKQIQAILQQSPTRIWVAT-EGAGLFLINPKTKEIKNYLHSPS----------N------  256 (795)
T ss_dssp             CEEEEETTTCCEEECC----CCCEEEEEEEETTEEEEEE-BSSCEEEEETTTTEEEEECCCTT----------C------
T ss_pred             CEEEEeCCCCeEEEecCCCCCCeeEEEEEcCCCCEEEEE-CCCCeEEEeCCCCeEEEeecCCC----------C------
Confidence            4666776665543321 1245678899888888766644 44448889987765432110000          0      


Q ss_pred             CCccccccccccCCcceEeeCCCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCC
Q psy12697        200 ESMEVDASIEIPQSKATKLIGHESEVFICAWNPVKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPS  279 (602)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (602)
                                 +    .  .-....|.++...+++.+.+ |+.+ -|.+|+..+....         ...........-.
T Consensus       257 -----------~----~--~l~~~~i~~i~~d~~g~lWi-gt~~-Gl~~~~~~~~~~~---------~~~~~~~~~~~l~  308 (795)
T 4a2l_A          257 -----------P----K--SISSNYIRSLAMDSQNRLWI-GTFN-DLNIYHEGTDSFA---------SYSSNPVENGSLS  308 (795)
T ss_dssp             -----------T----T--SCSCSBEEEEEECTTSCEEE-EESS-CEEEEETTTTEEE---------EECCCTTSTTSCS
T ss_pred             -----------c----c--ccCCCeEEEEEEcCCCCEEE-EeCC-hhheEcCCCCeEE---------EEecCCCCCCCCC
Confidence                       0    0  01235688998888877554 4444 4888887654211         0000000011112


Q ss_pred             CCceeEEeeCCCCCeEEEEeCCCeEEEEcCCCcceeeccc-------ccCCeEEEEEccCCCEEEEEecCCcEEEEeCCC
Q psy12697        280 NKDVTSLDWNNNGSFLATGSYDGYARIWTSDGSLKSTLGQ-------HKGPIFALKWNKRGNYILSAGVDKTTIIWDAAS  352 (602)
Q Consensus       280 ~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~-------~~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~  352 (602)
                      ...|.++...++|. |.+|+.++-|..|+........+..       ....|.++...++|+ |..|+.++-+..||..+
T Consensus       309 ~~~i~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~~g~-lWiGt~~~Gl~~~~~~~  386 (795)
T 4a2l_A          309 QRSVRSIFMDSQGG-MWLGTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDKDKN-LWIGTNDGGLNLYNPIT  386 (795)
T ss_dssp             SSCEEEEEECTTSC-EEEEESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEECTTSC-EEEEESSSCEEEECTTT
T ss_pred             CCcEEEEEEeCCcC-EEEEECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEECCCCC-EEEEECCCCeEEEcCCC
Confidence            46799999999886 5567777778888865433322211       235699999988887 55577777799999887


Q ss_pred             CceeEEee--------eccCCeeeeeccCCCe-EEEeeCCCeEEEEEcCCCceeeEec----cCCCCeEEEEECCCCCEE
Q psy12697        353 GQCEQQFS--------FHSAPALDVDWQSNTS-FASCSTDQHIHVCKLHSDKPVKSFE----GHTNEVNAIKWDPQGLLL  419 (602)
Q Consensus       353 ~~~~~~~~--------~~~~~~~~~~~~~~~~-~~~~~~~~~i~i~d~~~~~~~~~~~----~~~~~i~~~~~~~~~~~l  419 (602)
                      ++......        .....|.++...+++. +.+|+.++-|..+|..+++......    .....|.++..+++|.+.
T Consensus       387 ~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lw  466 (795)
T 4a2l_A          387 QRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLW  466 (795)
T ss_dssp             CCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCEE
T ss_pred             CcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCEE
Confidence            75543321        1235677888777887 8999988889999998776433221    234579999999988765


Q ss_pred             EEEECCCeEEEEeCCCCeeeEeec------cccccEEEEEECCCCCCCCCCCcceeeeeee-----c-------cCCccC
Q psy12697        420 ASCSDDMTLKIWSLDKDNCVHDLQ------AHNKEIYTIKWSPTGPETSNPNMSLIFILKS-----T-------LGQHKG  481 (602)
Q Consensus       420 ~~~~~dg~i~iwd~~~~~~~~~~~------~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-----~-------~~~~~~  481 (602)
                      +.. .+| +.+||..+++......      .....|.++...+++....... ..+..+..     .       ......
T Consensus       467 igt-~~G-l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~-~Gl~~~~~~~~~~~~~~~~~~~~l~~~  543 (795)
T 4a2l_A          467 LGT-LSA-LVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGGE-EGLSVFKQEGLDIQKASILPVSNVTKL  543 (795)
T ss_dssp             EEE-SSC-EEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEEES-SCEEEEEEETTEEEECCCSCSCGGGGS
T ss_pred             EEe-cCc-eeEEeCCCCeEEEccccccccccCCceEEEEEECCCCCEEEEeC-CceEEEeCCCCeEEEecCCCCCCCCCC
Confidence            544 444 8889988765433221      1235688888887775433222 22221110     0       012345


Q ss_pred             CeEEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeeecc----cCCCeeEeeecCCceEEEeeCCCcEEEeecCCCCcee
Q psy12697        482 PIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSF----HSAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVK  557 (602)
Q Consensus       482 ~v~~i~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~----~~~~v~~~~~s~~~~l~~~~~d~~i~iw~~~~~~~~~  557 (602)
                      .|.++..+++|++.++.. . -|..||..+++... +..    ....|.++...++|.|-.++. +.|..|+..+++ ..
T Consensus       544 ~i~~i~~d~~g~lWigT~-~-Gl~~~d~~~~~~~~-~~~~~gl~~~~i~~i~~d~~g~lWi~t~-~Gl~~~~~~~~~-~~  618 (795)
T 4a2l_A          544 FTNCIYEASNGIIWVGTR-E-GFYCFNEKDKQIKR-YNTTNGLPNNVVYGILEDSFGRLWLSTN-RGISCFNPETEK-FR  618 (795)
T ss_dssp             CEEEEEECTTSCEEEEES-S-CEEEEETTTTEEEE-ECGGGTCSCSCEEEEEECTTSCEEEEET-TEEEEEETTTTE-EE
T ss_pred             eeEEEEECCCCCEEEEeC-C-CceeECCCCCcEEE-eCCCCCCchhheEEEEECCCCCEEEEcC-CceEEEcCCCCc-EE
Confidence            789999999998666543 3 48899987665432 221    234688888888884444444 557778876543 22


Q ss_pred             eeecccccceEEEEecCCc--EEEEEECCCCCeEEEeccCCeEEee
Q psy12697        558 SFEGHTTGQLVHSYKGTGG--IFEVCWNSRGDKVGASASDGSVFKN  601 (602)
Q Consensus       558 ~~~~~~~~~~~~~~~~~~~--i~~l~~spdg~~l~~~~~dg~v~i~  601 (602)
                      .+.. ..|-.      ...  ..++..+++|. |..|+.+|.++++
T Consensus       619 ~~~~-~dGl~------~~~f~~~~~~~~~~G~-l~~g~~~Gl~~~~  656 (795)
T 4a2l_A          619 NFTE-SDGLQ------SNQFNTASYCRTSVGQ-MYFGGINGITTFR  656 (795)
T ss_dssp             EECG-GGTCS------CSCEEEEEEEECTTSC-EEEEETTEEEEEC
T ss_pred             EcCC-cCCCc------cccCccCceeECCCCe-EEEecCCceEEEc
Confidence            2221 11110      112  24677788887 5557778877764

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.47  E-value=1.1e-10  Score=110.52  Aligned_cols=220  Identities=8%  Similarity=-0.050  Sum_probs=144.2

Q ss_pred             eEEEEEccCCCE-EEEEecCCcEEEEeCCCCceeEEeeeccCCeeeeeccCCCeEEEeeCCCeEEEEEcCCCceeeEecc
Q psy12697        324 IFALKWNKRGNY-ILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEG  402 (602)
Q Consensus       324 i~~~~~~~~~~~-l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~  402 (602)
                      .....|+|++.. +++...++.|..||..+++.. .+. ....+.++.+.+++.++++..+ .|.+||..+++.......
T Consensus        51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~-~~~~v~~i~~~~dg~l~v~~~~-gl~~~d~~~g~~~~~~~~  127 (326)
T 2ghs_A           51 GEGPTFDPASGTAWWFNILERELHELHLASGRKT-VHA-LPFMGSALAKISDSKQLIASDD-GLFLRDTATGVLTLHAEL  127 (326)
T ss_dssp             EEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEE-CSSCEEEEEEEETTEEEEEETT-EEEEEETTTCCEEEEECS
T ss_pred             CcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEE-EEE-CCCcceEEEEeCCCeEEEEECC-CEEEEECCCCcEEEEeeC
Confidence            457789997554 455556789999999887643 232 2457888999999888887754 599999988775332221


Q ss_pred             ----CCCCeEEEEECCCCCEEEEEEC------CCeEEEEeCCCCeeeEeeccccccEEEEEECCCCCCCCCCCcceeeee
Q psy12697        403 ----HTNEVNAIKWDPQGLLLASCSD------DMTLKIWSLDKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFIL  472 (602)
Q Consensus       403 ----~~~~i~~~~~~~~~~~l~~~~~------dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~  472 (602)
                          ....+..++++|+|+++++...      .+.|..++  +++.. .+..                            
T Consensus       128 ~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~-~~~~----------------------------  176 (326)
T 2ghs_A          128 ESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVT-KLFA----------------------------  176 (326)
T ss_dssp             STTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEE-EEEE----------------------------
T ss_pred             CCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEE-EeeC----------------------------
Confidence                1235889999999997766542      24455555  33321 1110                            


Q ss_pred             eeccCCccCCeEEEEEccCCCEEEEE-eCCCeEEEEeCC--CC-ce-----eeeecccCCCeeEeeecCCc-eEEEeeCC
Q psy12697        473 KSTLGQHKGPIFALKWNKRGNYILSA-GVDKTTIIWDAA--SG-QC-----EQQFSFHSAPALDVDWQSNT-SFASCSTD  542 (602)
Q Consensus       473 ~~~~~~~~~~v~~i~~s~~~~~l~s~-~~dg~i~iwd~~--~~-~~-----~~~~~~~~~~v~~~~~s~~~-~l~~~~~d  542 (602)
                            +......++|+|||+.|+.+ ..++.|.+||+.  ++ ..     ...+.........+++.++| .+++...+
T Consensus       177 ------~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~  250 (326)
T 2ghs_A          177 ------DISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGE  250 (326)
T ss_dssp             ------EESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETT
T ss_pred             ------CCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCC
Confidence                  11234578888899876554 457899999986  55 32     22233234557789999999 55555567


Q ss_pred             CcEEEeecCCCCceeeeecccccceEEEEecCCcEEEEEEC-CCCCeEEEeccC
Q psy12697        543 QHIHVCKLHSDKPVKSFEGHTTGQLVHSYKGTGGIFEVCWN-SRGDKVGASASD  595 (602)
Q Consensus       543 ~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s-pdg~~l~~~~~d  595 (602)
                      +.|.+|+. +++.+..+...           ...+.+++|+ ||++.|++++..
T Consensus       251 ~~v~~~d~-~g~~~~~i~~~-----------~~~~~~~af~g~d~~~L~vt~~~  292 (326)
T 2ghs_A          251 GAVDRYDT-DGNHIARYEVP-----------GKQTTCPAFIGPDASRLLVTSAR  292 (326)
T ss_dssp             TEEEEECT-TCCEEEEEECS-----------CSBEEEEEEESTTSCEEEEEEBC
T ss_pred             CEEEEECC-CCCEEEEEECC-----------CCCcEEEEEecCCCCEEEEEecC
Confidence            88999997 45444443322           2458999998 998877666543

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.45  E-value=6.2e-11  Score=111.17  Aligned_cols=236  Identities=9%  Similarity=0.020  Sum_probs=154.6

Q ss_pred             eeecccccCCeEEEEEccCCCE-EEEEecCCcEEEEeCCCCceeEEeeeccCCeeeeeccCCCeEEEeeC-CCeEEEEEc
Q psy12697        314 KSTLGQHKGPIFALKWNKRGNY-ILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTSFASCST-DQHIHVCKL  391 (602)
Q Consensus       314 ~~~~~~~~~~i~~~~~~~~~~~-l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~i~d~  391 (602)
                      ...+...........|+|+++. +++...++.|..|+. +++ ...+......+..+.+.+++.++++.. ++.|..|+.
T Consensus        37 ~~~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~-~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~  114 (305)
T 3dr2_A           37 LLTLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGT-VDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDA  114 (305)
T ss_dssp             CEEEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSC-EEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECT
T ss_pred             eEEEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCC-EEEEeCCCCccceeeECCCCCEEEEECCCCEEEEECC
Confidence            3344445556788999999984 556667889999997 454 345555666788899999988877765 478999998


Q ss_pred             CCCceeeEecc----CCCCeEEEEECCCCCEEEE----EEC-------------CCeEEEEeCCCCeeeEeeccccccEE
Q psy12697        392 HSDKPVKSFEG----HTNEVNAIKWDPQGLLLAS----CSD-------------DMTLKIWSLDKDNCVHDLQAHNKEIY  450 (602)
Q Consensus       392 ~~~~~~~~~~~----~~~~i~~~~~~~~~~~l~~----~~~-------------dg~i~iwd~~~~~~~~~~~~~~~~i~  450 (602)
                      . ++.......    ....+..++++|+|++.++    |..             .+.|..||..+++.....        
T Consensus       115 ~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~--------  185 (305)
T 3dr2_A          115 D-GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA--------  185 (305)
T ss_dssp             T-SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE--------
T ss_pred             C-CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe--------
Confidence            6 443222111    1234678999999998886    321             245666665544322111        


Q ss_pred             EEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCC------CeEEEEeCCCCcee--eee-ccc
Q psy12697        451 TIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVD------KTTIIWDAASGQCE--QQF-SFH  521 (602)
Q Consensus       451 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d------g~i~iwd~~~~~~~--~~~-~~~  521 (602)
                                                  .......++|+||++.|+.+...      +.|.+|++..+...  ..+ ...
T Consensus       186 ----------------------------~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~  237 (305)
T 3dr2_A          186 ----------------------------DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVP  237 (305)
T ss_dssp             ----------------------------EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCS
T ss_pred             ----------------------------cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECC
Confidence                                        01234568888999988777665      78999998754311  111 112


Q ss_pred             CCCeeEeeecCCceEEEeeCCCcEEEeecCCCCceeeeecccccceEEEEecCCcEEEEEECCCCCeEEEeccCCeEEee
Q psy12697        522 SAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEGHTTGQLVHSYKGTGGIFEVCWNSRGDKVGASASDGSVFKN  601 (602)
Q Consensus       522 ~~~v~~~~~s~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~v~i~  601 (602)
                      ......+++.++|.|.++..+ .|.+|+. .++.+..            +.....+..++|+|+++.|++++.++..+++
T Consensus       238 ~~~pdgi~~d~~G~lwv~~~~-gv~~~~~-~g~~~~~------------~~~~~~~~~~~f~~d~~~L~it~~~~l~~~~  303 (305)
T 3dr2_A          238 DGLPDGFCVDRGGWLWSSSGT-GVCVFDS-DGQLLGH------------IPTPGTASNCTFDQAQQRLFITGGPCLWMLP  303 (305)
T ss_dssp             SSCCCSEEECTTSCEEECCSS-EEEEECT-TSCEEEE------------EECSSCCCEEEECTTSCEEEEEETTEEEEEE
T ss_pred             CCCCCeEEECCCCCEEEecCC-cEEEECC-CCCEEEE------------EECCCceeEEEEeCCCCEEEEEcCCeEEEEE
Confidence            344567889999955555544 4999985 3333333            3333457889999999999999998888876


Q ss_pred             C
Q psy12697        602 V  602 (602)
Q Consensus       602 v  602 (602)
                      +
T Consensus       304 ~  304 (305)
T 3dr2_A          304 L  304 (305)
T ss_dssp             C
T ss_pred             C
Confidence            4

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.45  E-value=6.4e-12  Score=119.11  Aligned_cols=166  Identities=11%  Similarity=0.104  Sum_probs=126.4

Q ss_pred             CceeEEeeCCCCCeEEEEeCCCeEEEEcCCCc----------c-eeecccccCCeEEEEEccCCCEEEEEecCCcEEEEe
Q psy12697        281 KDVTSLDWNNNGSFLATGSYDGYARIWTSDGS----------L-KSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWD  349 (602)
Q Consensus       281 ~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~----------~-~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~wd  349 (602)
                      ..+..+++++...++++|+.++ +.+|+.+.-          . ......+.. |..++|  ++++|+++ .++.|++||
T Consensus        38 ~~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d~~~L~v~-~~~~l~v~d  112 (388)
T 1xip_A           38 ASLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--HGDQVLVS-TRNALYSLD  112 (388)
T ss_dssp             SCCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--ETTEEEEE-ESSEEEEEE
T ss_pred             ccccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--CCCEEEEE-cCCcEEEEE
Confidence            4689999999999999999986 445874311          1 112224566 999999  88999988 889999999


Q ss_pred             CCCCceeEEeeeccCCeeeeeccCCCeEEEeeCCCeEEEEEcCCCceeeEeccCCCCeEEEEECCCCCEEEEEECCCeEE
Q psy12697        350 AASGQCEQQFSFHSAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLK  429 (602)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~  429 (602)
                      +.+.........+..++.++.+.+.. +++++.||.+.+||+.++....    +...|++++|+|+|  ++.|..||.++
T Consensus       113 v~sl~~~~~~~~~~~~v~~i~~~~p~-~av~~~dG~L~v~dl~~~~~~~----~~~~Vs~v~WSpkG--~~vg~~dg~i~  185 (388)
T 1xip_A          113 LEELSEFRTVTSFEKPVFQLKNVNNT-LVILNSVNDLSALDLRTKSTKQ----LAQNVTSFDVTNSQ--LAVLLKDRSFQ  185 (388)
T ss_dssp             SSSTTCEEEEEECSSCEEEEEECSSE-EEEEETTSEEEEEETTTCCEEE----EEESEEEEEECSSE--EEEEETTSCEE
T ss_pred             chhhhccCccceeecceeeEEecCCC-EEEEECCCCEEEEEccCCcccc----ccCCceEEEEcCCc--eEEEEcCCcEE
Confidence            99887666666777778887776654 8999999999999999877643    34579999999999  78899999999


Q ss_pred             EEeCCCCee--eEeec---------cccccEEEEEECCCC
Q psy12697        430 IWSLDKDNC--VHDLQ---------AHNKEIYTIKWSPTG  458 (602)
Q Consensus       430 iwd~~~~~~--~~~~~---------~~~~~i~~~~~~~~~  458 (602)
                      +|+...++.  ..++.         .|...+.++.|.++.
T Consensus       186 ~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~  225 (388)
T 1xip_A          186 SFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQ  225 (388)
T ss_dssp             EEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSS
T ss_pred             EEcCCCccccccceecCCcccccccCCCeeEEEEEEecCC
Confidence            999887764  44451         234555555555543

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.43  E-value=1.9e-10  Score=108.73  Aligned_cols=222  Identities=11%  Similarity=0.008  Sum_probs=149.1

Q ss_pred             eeEEeeCCCC-CeEEEEeCCCeEEEEcCCCcceeecccccCCeEEEEEccCCCEEEEEecCCcEEEEeCCCCceeEEeee
Q psy12697        283 VTSLDWNNNG-SFLATGSYDGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSF  361 (602)
Q Consensus       283 i~~~~~~~~~-~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~  361 (602)
                      ..+..|+|++ .++++...++.|..|+.++.....+. ....+.++.|+++++++++. .+ .|.+||..+++.......
T Consensus        51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~~~-~~~~v~~i~~~~dg~l~v~~-~~-gl~~~d~~~g~~~~~~~~  127 (326)
T 2ghs_A           51 GEGPTFDPASGTAWWFNILERELHELHLASGRKTVHA-LPFMGSALAKISDSKQLIAS-DD-GLFLRDTATGVLTLHAEL  127 (326)
T ss_dssp             EEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEEEE-CSSCEEEEEEEETTEEEEEE-TT-EEEEEETTTCCEEEEECS
T ss_pred             CcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEEEE-CCCcceEEEEeCCCeEEEEE-CC-CEEEEECCCCcEEEEeeC
Confidence            4677899974 45666667889999998865544433 34679999999999877654 34 599999988875433221


Q ss_pred             c----cCCeeeeeccCCCeEEEeeC-------CCeEEEEEcCCCceeeEeccCCCCeEEEEECCCCCEEEEEE-CCCeEE
Q psy12697        362 H----SAPALDVDWQSNTSFASCST-------DQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCS-DDMTLK  429 (602)
Q Consensus       362 ~----~~~~~~~~~~~~~~~~~~~~-------~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~  429 (602)
                      .    ...+..+.+.+++.+.+++.       .+.|+.++  +++. ..+..+......++|+|+++.|+.+. .++.|.
T Consensus       128 ~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~-~~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~  204 (326)
T 2ghs_A          128 ESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKV-TKLFADISIPNSICFSPDGTTGYFVDTKVNRLM  204 (326)
T ss_dssp             STTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEE-EEEEEEESSEEEEEECTTSCEEEEEETTTCEEE
T ss_pred             CCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcE-EEeeCCCcccCCeEEcCCCCEEEEEECCCCEEE
Confidence            1    13467888999888776654       24666666  4443 33333334578999999998776554 568899


Q ss_pred             EEeCC--CC-eeeEeeccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCCCeEEE
Q psy12697        430 IWSLD--KD-NCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTII  506 (602)
Q Consensus       430 iwd~~--~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~i  506 (602)
                      +||+.  ++ ....      ..+  +.                     .+.........++++++|++.++...++.|.+
T Consensus       205 ~~d~~~~~Gl~~~~------~~~--~~---------------------~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~  255 (326)
T 2ghs_A          205 RVPLDARTGLPTGK------AEV--FI---------------------DSTGIKGGMDGSVCDAEGHIWNARWGEGAVDR  255 (326)
T ss_dssp             EEEBCTTTCCBSSC------CEE--EE---------------------ECTTSSSEEEEEEECTTSCEEEEEETTTEEEE
T ss_pred             EEEcccccCCcccC------ceE--EE---------------------ECCCCCCCCCeeEECCCCCEEEEEeCCCEEEE
Confidence            99986  44 2100      000  00                     00012234467888889988887777788999


Q ss_pred             EeCCCCceeeeecccCCCeeEeeec-CCc-eEEEee
Q psy12697        507 WDAASGQCEQQFSFHSAPALDVDWQ-SNT-SFASCS  540 (602)
Q Consensus       507 wd~~~~~~~~~~~~~~~~v~~~~~s-~~~-~l~~~~  540 (602)
                      ||. +++.+..+..+...+++++|+ |++ .|++++
T Consensus       256 ~d~-~g~~~~~i~~~~~~~~~~af~g~d~~~L~vt~  290 (326)
T 2ghs_A          256 YDT-DGNHIARYEVPGKQTTCPAFIGPDASRLLVTS  290 (326)
T ss_dssp             ECT-TCCEEEEEECSCSBEEEEEEESTTSCEEEEEE
T ss_pred             ECC-CCCEEEEEECCCCCcEEEEEecCCCCEEEEEe
Confidence            998 577777777777779999998 887 554443

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.43  E-value=3.4e-11  Score=114.88  Aligned_cols=257  Identities=9%  Similarity=0.017  Sum_probs=163.0

Q ss_pred             CceeEEeeCCCCCeEEEEe--CCCeEEEEcC-CCcceeec-------ccccCCeEEEEEccCCCEEEEEec-----CCcE
Q psy12697        281 KDVTSLDWNNNGSFLATGS--YDGYARIWTS-DGSLKSTL-------GQHKGPIFALKWNKRGNYILSAGV-----DKTT  345 (602)
Q Consensus       281 ~~i~~~~~~~~~~~l~~~~--~dg~i~i~~~-~~~~~~~~-------~~~~~~i~~~~~~~~~~~l~~~~~-----dg~i  345 (602)
                      .....++++++|+.+++..  .++.+++|.+ ++.. ..+       ..+...+..++++++++.+++-..     ++.|
T Consensus        17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~-~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i   95 (343)
T 2qe8_A           17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGL-IPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKL   95 (343)
T ss_dssp             SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEE-EESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCEE
T ss_pred             CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCe-ecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeE
Confidence            4578999999999888864  2342344433 4432 222       234567999999999876555433     5789


Q ss_pred             EEEeCCCCceeEEeeecc------CCeeeeeccCC-CeE-EEee---CCCeEEEEEcCCCceeeEeccCCCCeE-EEEEC
Q psy12697        346 IIWDAASGQCEQQFSFHS------APALDVDWQSN-TSF-ASCS---TDQHIHVCKLHSDKPVKSFEGHTNEVN-AIKWD  413 (602)
Q Consensus       346 ~~wd~~~~~~~~~~~~~~------~~~~~~~~~~~-~~~-~~~~---~~~~i~i~d~~~~~~~~~~~~~~~~i~-~~~~~  413 (602)
                      .+||+.+++.+..+....      ..+..+++.++ +.+ ++..   .++.|.+||+.+++..+.+.+|..... ...+.
T Consensus        96 ~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~  175 (343)
T 2qe8_A           96 VAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDLV  175 (343)
T ss_dssp             EEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCCE
T ss_pred             EEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCccccccccee
Confidence            999999998777765432      23567778753 554 4433   578999999998887776665432110 13344


Q ss_pred             CCCCEEEEEECCCeEEEEeCCCCeeeEeeccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCC
Q psy12697        414 PQGLLLASCSDDMTLKIWSLDKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGN  493 (602)
Q Consensus       414 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~  493 (602)
                      ++|..+.+.+.++.++.|..                                                .+..++|+|||+
T Consensus       176 ~~g~~~~~~~~~g~~~~~~~------------------------------------------------~~~gia~s~dg~  207 (343)
T 2qe8_A          176 IDGVPVQIGQPDGTVIRPHL------------------------------------------------GVNGIVLDAENE  207 (343)
T ss_dssp             ETTEECBEECTTSCEECCCC------------------------------------------------CEEEEEECTTSC
T ss_pred             ECCEEEEeccCCCceeceec------------------------------------------------ccceeEeccCCC
Confidence            56666666677776655531                                                234677888888


Q ss_pred             EEEEEeCCC-eEEEEeCC---CCc-----eee--eecccCCCeeEeeecCCc-eEEEeeCCCcEEEeecCCCCceeeeec
Q psy12697        494 YILSAGVDK-TTIIWDAA---SGQ-----CEQ--QFSFHSAPALDVDWQSNT-SFASCSTDQHIHVCKLHSDKPVKSFEG  561 (602)
Q Consensus       494 ~l~s~~~dg-~i~iwd~~---~~~-----~~~--~~~~~~~~v~~~~~s~~~-~l~~~~~d~~i~iw~~~~~~~~~~~~~  561 (602)
                      .|+.+..++ .+..++..   .+.     ...  ...++......++++++| .+++...++.|.+||..+++.. .+..
T Consensus       208 ~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~-~~~~  286 (343)
T 2qe8_A          208 WLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYK-LLVT  286 (343)
T ss_dssp             EEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEE-EEEE
T ss_pred             EEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEE-EEEE
Confidence            888887766 45554432   111     011  111344456789999999 7777778899999997444321 1111


Q ss_pred             ccccceEEEEecCCcEEEEEECCCCCeEEEeccCC
Q psy12697        562 HTTGQLVHSYKGTGGIFEVCWNSRGDKVGASASDG  596 (602)
Q Consensus       562 ~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg  596 (602)
                      .         ..-..+.+++|+++|.++++.+..+
T Consensus       287 ~---------~~~~~p~~va~~~~g~l~v~~~~~~  312 (343)
T 2qe8_A          287 D---------EKLSWTDSFNFGSDGYLYFDCNQLH  312 (343)
T ss_dssp             C---------GGGSCEEEEEECTTSCEEEEECCGG
T ss_pred             C---------CceecCCeeEECCCCcEEEEeCccc
Confidence            1         1124578999999998887776543

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.42  E-value=6.1e-12  Score=119.27  Aligned_cols=179  Identities=12%  Similarity=0.032  Sum_probs=123.1

Q ss_pred             CeeeeeccCCC-eEEEeeCCCeEEEEEcCCCc-----------eeeEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEe
Q psy12697        365 PALDVDWQSNT-SFASCSTDQHIHVCKLHSDK-----------PVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWS  432 (602)
Q Consensus       365 ~~~~~~~~~~~-~~~~~~~~~~i~i~d~~~~~-----------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd  432 (602)
                      ++..+++++.. .+++|+.+ .+.+|++....           +.... .+.. |+.++|  ++++|+++ .++.|++||
T Consensus        39 ~~nlLais~~~gll~a~~~~-~l~v~~~~~l~~~~~~~~~~~~~~~~~-~lp~-V~~l~f--d~~~L~v~-~~~~l~v~d  112 (388)
T 1xip_A           39 SLQNLDISNSKSLFVAASGS-KAVVGELQLLRDHITSDSTPLTFKWEK-EIPD-VIFVCF--HGDQVLVS-TRNALYSLD  112 (388)
T ss_dssp             CCBCEEEETTTTEEEEEETT-EEEEEEHHHHHHHHHSSSCCCCCSEEE-ECTT-EEEEEE--ETTEEEEE-ESSEEEEEE
T ss_pred             cccEEEEcCCCCEEEEeCCC-EEEEEEhhHhhhhhccccccccceEEe-eCCC-eeEEEE--CCCEEEEE-cCCcEEEEE
Confidence            57777887774 45555554 66669865332           21222 3556 999999  99999999 889999999


Q ss_pred             CCCCeeeEeeccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCC
Q psy12697        433 LDKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASG  512 (602)
Q Consensus       433 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~~~~  512 (602)
                      +++.........+...+.                                  ++.+.+.  .++++..||.|.+||+.++
T Consensus       113 v~sl~~~~~~~~~~~~v~----------------------------------~i~~~~p--~~av~~~dG~L~v~dl~~~  156 (388)
T 1xip_A          113 LEELSEFRTVTSFEKPVF----------------------------------QLKNVNN--TLVILNSVNDLSALDLRTK  156 (388)
T ss_dssp             SSSTTCEEEEEECSSCEE----------------------------------EEEECSS--EEEEEETTSEEEEEETTTC
T ss_pred             chhhhccCccceeeccee----------------------------------eEEecCC--CEEEEECCCCEEEEEccCC
Confidence            987654444444433333                                  3333332  2888999999999999988


Q ss_pred             ceeeeecccCCCeeEeeecCCceEEEeeCCCcEEEeecCCCCc--eeeeecccccceEEEEecCCcEEEEEECCCCCeEE
Q psy12697        513 QCEQQFSFHSAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKP--VKSFEGHTTGQLVHSYKGTGGIFEVCWNSRGDKVG  590 (602)
Q Consensus       513 ~~~~~~~~~~~~v~~~~~s~~~~l~~~~~d~~i~iw~~~~~~~--~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~  590 (602)
                      ....    +...|++++|||+| ++.|..||.+++|+...++.  .+.+.....-.  ....+...|.++.|.+++.+|+
T Consensus       157 ~~~~----~~~~Vs~v~WSpkG-~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~--~~~~~~~~V~sI~wl~~~~flv  229 (388)
T 1xip_A          157 STKQ----LAQNVTSFDVTNSQ-LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELE--ELPVEEYSPLSVTILSPQDFLA  229 (388)
T ss_dssp             CEEE----EEESEEEEEECSSE-EEEEETTSCEEEEEEETTEEEEEEEECCCHHHH--TSCTTTSEEEEEEESSSSEEEE
T ss_pred             cccc----ccCCceEEEEcCCc-eEEEEcCCcEEEEcCCCccccccceecCCcccc--cccCCCeeEEEEEEecCCeEEE
Confidence            7653    45689999999999 78899999999998766653  44442211000  0000236699999999999988


Q ss_pred             Ee
Q psy12697        591 AS  592 (602)
Q Consensus       591 ~~  592 (602)
                      +=
T Consensus       230 ~y  231 (388)
T 1xip_A          230 VF  231 (388)
T ss_dssp             EE
T ss_pred             EE
Confidence            63

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=99.41  E-value=1.7e-10  Score=111.83  Aligned_cols=304  Identities=9%  Similarity=0.019  Sum_probs=185.7

Q ss_pred             CCEEEEeeCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEeeCCCCCeEEEEeCCCeEEEEcCC-Cc
Q psy12697        234 KDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFLATGSYDGYARIWTSD-GS  312 (602)
Q Consensus       234 ~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~-~~  312 (602)
                      +..+++++.++.|..+|..+++............       ........+.+. ...++..+++++.++.|..+|.. ++
T Consensus        53 ~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~-------~~~~~~~~~~~~-~~~~~~~v~v~~~~g~l~a~d~~tG~  124 (376)
T 3q7m_A           53 DNVVYAADRAGLVKALNADDGKEIWSVSLAEKDG-------WFSKEPALLSGG-VTVSGGHVYIGSEKAQVYALNTSDGT  124 (376)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEECCC----------CCSCCCCCEEEE-EEEETTEEEEEETTSEEEEEETTTCC
T ss_pred             CCEEEEEcCCCeEEEEEccCCceeeeecCccccc-------cccccCcccccC-ceEeCCEEEEEcCCCEEEEEECCCCC
Confidence            6678888888999999998876532221110000       000001112111 11235678888999999999976 66


Q ss_pred             ceeecccccCCeEEEEEccCCCEEEEEecCCcEEEEeCCCCceeEEeeeccCCe-----eeeeccCCCeEEEeeCCCeEE
Q psy12697        313 LKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPA-----LDVDWQSNTSFASCSTDQHIH  387 (602)
Q Consensus       313 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~i~  387 (602)
                      ..................  +..++.++.++.+..+|..+++.+..........     ..... .++.++++..++.+.
T Consensus       125 ~~W~~~~~~~~~~~p~~~--~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~-~~~~v~~g~~~g~l~  201 (376)
T 3q7m_A          125 VAWQTKVAGEALSRPVVS--DGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTT-AFGAAVVGGDNGRVS  201 (376)
T ss_dssp             EEEEEECSSCCCSCCEEE--TTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEE-ETTEEEECCTTTEEE
T ss_pred             EEEEEeCCCceEcCCEEE--CCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEE-ECCEEEEEcCCCEEE
Confidence            554443322211111222  4578888899999999999999888776543221     11111 257788889999999


Q ss_pred             EEEcCCCceeeEeccCCCC-------eEEEEECC--CCCEEEEEECCCeEEEEeCCCCeeeEeeccccccEEEEEECCCC
Q psy12697        388 VCKLHSDKPVKSFEGHTNE-------VNAIKWDP--QGLLLASCSDDMTLKIWSLDKDNCVHDLQAHNKEIYTIKWSPTG  458 (602)
Q Consensus       388 i~d~~~~~~~~~~~~~~~~-------i~~~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~  458 (602)
                      .+|..+++.+.........       +..+...|  .+..++.++.++.+..+|..+++.+......  ...        
T Consensus       202 ~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~~w~~~~~--~~~--------  271 (376)
T 3q7m_A          202 AVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMWKRELG--SVN--------  271 (376)
T ss_dssp             EEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTTCCEEEEECCC--CEE--------
T ss_pred             EEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCCcEEeeccCC--CCC--------
Confidence            9999999887665532110       00011112  3467788888999999999998877654321  111        


Q ss_pred             CCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeeecc-cCCCeeEeeecCCceEE
Q psy12697        459 PETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSF-HSAPALDVDWQSNTSFA  537 (602)
Q Consensus       459 ~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~~v~~~~~s~~~~l~  537 (602)
                                                .+..  ++..+..++.++.|..+|..+++.+..... ....+...... ++.|+
T Consensus       272 --------------------------~~~~--~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~-~~~l~  322 (376)
T 3q7m_A          272 --------------------------DFIV--DGNRIYLVDQNDRVMALTIDGGVTLWTQSDLLHRLLTSPVLY-NGNLV  322 (376)
T ss_dssp             --------------------------EEEE--ETTEEEEEETTCCEEEEETTTCCEEEEECTTTTSCCCCCEEE-TTEEE
T ss_pred             --------------------------CceE--ECCEEEEEcCCCeEEEEECCCCcEEEeecccCCCcccCCEEE-CCEEE
Confidence                                      1111  355678888899999999999998766652 22223333332 34888


Q ss_pred             EeeCCCcEEEeecCCCCceeeeecccccceEEEEecCCcEE-EEEECCCCCeEEEeccCCeEEe
Q psy12697        538 SCSTDQHIHVCKLHSDKPVKSFEGHTTGQLVHSYKGTGGIF-EVCWNSRGDKVGASASDGSVFK  600 (602)
Q Consensus       538 ~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~l~~spdg~~l~~~~~dg~v~i  600 (602)
                      .++.+|.+.++|..+++.+.......           ..+. ....  .+..|++++.+|.++.
T Consensus       323 v~~~~g~l~~~d~~tG~~~~~~~~~~-----------~~~~~~~~~--~~~~l~v~~~~G~l~~  373 (376)
T 3q7m_A          323 VGDSEGYLHWINVEDGRFVAQQKVDS-----------SGFQTEPVA--ADGKLLIQAKDGTVYS  373 (376)
T ss_dssp             EECTTSEEEEEETTTCCEEEEEECCT-----------TCBCSCCEE--ETTEEEEEBTTSCEEE
T ss_pred             EEeCCCeEEEEECCCCcEEEEEecCC-----------CcceeCCEE--ECCEEEEEeCCCEEEE
Confidence            88999999999998888776654321           1111 1111  2567888888887653

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.41  E-value=3.5e-11  Score=126.37  Aligned_cols=242  Identities=14%  Similarity=0.134  Sum_probs=155.3

Q ss_pred             ccCCceEEEEECCCCCeEEE-----eeCCceEEEEecCCceeEEEeeccCceEEEEeCCCCCCCCCCCCccccccccccC
Q psy12697        138 RHTEPVYSVAFSPDGKFLAS-----GSFDKCVHIWSARTGQLVHSYKGTGGIFEVCWNSRGTPPNPPESMEVDASIEIPQ  212 (602)
Q Consensus       138 ~h~~~V~~~~~s~d~~~l~s-----~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  212 (602)
                      +|...+..++|||||++||-     |+.+..|++||+.+|+.+...                                  
T Consensus       126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~----------------------------------  171 (693)
T 3iuj_A          126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETP----------------------------------  171 (693)
T ss_dssp             TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEE----------------------------------
T ss_pred             CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccc----------------------------------
Confidence            46667889999999999984     334468999999999865321                                  


Q ss_pred             CcceEeeCCCcceEEEEEcCCCCEEEEeeCCCc-------------EEEEeCCCCCCCCCccceEEEEEEecCCCcccC-
Q psy12697        213 SKATKLIGHESEVFICAWNPVKDFLASGSGDST-------------ARIWDMTDSTKKDPKELQIVLRHCISKGGTEVP-  278 (602)
Q Consensus       213 ~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~-------------i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  278 (602)
                           +  +......++|+ |++.|+.++.+..             |.+|++.+.......    +..        ... 
T Consensus       172 -----~--~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~----v~~--------~~~~  231 (693)
T 3iuj_A          172 -----L--KDVKFSGISWL-GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRL----VFG--------AIPA  231 (693)
T ss_dssp             -----E--EEEESCCCEEE-TTTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEE----EES--------CSGG
T ss_pred             -----c--CCceeccEEEe-CCCEEEEEEecCcccccccccCCCcEEEEEECCCCcccceE----EEe--------cCCC
Confidence                 0  00112456899 9998988887743             888988765421110    000        000 


Q ss_pred             CCCceeEEeeCCCCCeEEEEeC----CCeEEEEcCCCc--ceeecccccCCeEEEEEccCCCEEEEEec-C---CcEEEE
Q psy12697        279 SNKDVTSLDWNNNGSFLATGSY----DGYARIWTSDGS--LKSTLGQHKGPIFALKWNKRGNYILSAGV-D---KTTIIW  348 (602)
Q Consensus       279 ~~~~i~~~~~~~~~~~l~~~~~----dg~i~i~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d---g~i~~w  348 (602)
                      +......+.|+|||++|+....    ++.|.++++++.  ....+..+....... |++++..|+..+. +   +.|..+
T Consensus       232 ~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~  310 (693)
T 3iuj_A          232 QHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTV  310 (693)
T ss_dssp             GCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEE
T ss_pred             CCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEE
Confidence            1234678899999998866543    258999998643  444555555555554 6677776665443 2   679999


Q ss_pred             eCCCCce--eEEeeeccCCeeeeeccCCC-eEEE-eeCCC--eEEEEEcCCCceeeEec-cCCCCeEEEEECCCCCEEEE
Q psy12697        349 DAASGQC--EQQFSFHSAPALDVDWQSNT-SFAS-CSTDQ--HIHVCKLHSDKPVKSFE-GHTNEVNAIKWDPQGLLLAS  421 (602)
Q Consensus       349 d~~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~--~i~i~d~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~  421 (602)
                      |+.++..  ...+..+...+.  .|++++ .++. ...++  .|++|++..+. ...+. .....+..+.++|+++.|+.
T Consensus       311 d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~g~~-~~~l~~p~~~~~~~~~~~~d~~~l~~  387 (693)
T 3iuj_A          311 DAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEYMVDATARVEQFDYEGKR-VREVALPGLGSVSGFNGKHDDPALYF  387 (693)
T ss_dssp             ETTSCCGGGCEEEECCCSSCE--EEEEETTEEEEEEEETTEEEEEEECTTSCE-EEEECCSSSSEEEECCCCTTCSCEEE
T ss_pred             eCCCCCccccEEEecCCCCEE--EEEEECCEEEEEEEECCeeEEEEEECCCCe-eEEeecCCCceEEeeecCCCCCEEEE
Confidence            9988754  234444444444  555543 3444 44454  68889887543 34443 24456778888888887766


Q ss_pred             EECC----CeEEEEeCCCCe
Q psy12697        422 CSDD----MTLKIWSLDKDN  437 (602)
Q Consensus       422 ~~~d----g~i~iwd~~~~~  437 (602)
                      ...+    +.+..||+.+++
T Consensus       388 ~~ss~~tP~~l~~~d~~~g~  407 (693)
T 3iuj_A          388 GFENYAQPPTLYRFEPKSGA  407 (693)
T ss_dssp             EEECSSSCCEEEEECTTTCC
T ss_pred             EecCCCCCCEEEEEECCCCe
Confidence            6554    789999988765

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=99.39  E-value=9.6e-11  Score=122.00  Aligned_cols=308  Identities=12%  Similarity=0.101  Sum_probs=185.1

Q ss_pred             CCeEEEeeCCceEEEEecCCceeEEEeeccCceEEEEeCCCCCCCCCCCCccccccccccCCcceEeeCCCcceEEEEEc
Q psy12697        152 GKFLASGSFDKCVHIWSARTGQLVHSYKGTGGIFEVCWNSRGTPPNPPESMEVDASIEIPQSKATKLIGHESEVFICAWN  231 (602)
Q Consensus       152 ~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~  231 (602)
                      +..|+.++.++.|.-+|..+|+.+-++.......                  ..  ......     .....    ++. 
T Consensus        70 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~------------------~~--~~~~~~-----~~~~~----~~~-  119 (689)
T 1yiq_A           70 DGVMYTTGPFSVVYALDARDGRLIWKYDPQSDRH------------------RA--GEACCD-----AVNRG----VAV-  119 (689)
T ss_dssp             TTEEEEECGGGCEEEEETTTCCEEEEECCCCCGG------------------GG--GGCTTC-----SCCCC----CEE-
T ss_pred             CCEEEEEcCCCeEEEEECCCCceeEEEcCCCCcc------------------cc--cccccc-----CCCCc----cEE-
Confidence            6677777889999999999999987764321100                  00  000000     00000    111 


Q ss_pred             CCCCEEEEeeCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEeeCC---CCCeEEEEe------CCC
Q psy12697        232 PVKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNN---NGSFLATGS------YDG  302 (602)
Q Consensus       232 ~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~~~l~~~~------~dg  302 (602)
                       .+..++.++.|+.|..+|..+++........        ..      ......+..+|   ++ .++++.      .+|
T Consensus       120 -~~g~v~v~~~dg~l~AlDa~TG~~~W~~~~~--------~~------~~~~~~~~~sP~v~~g-~v~vg~~~~~~~~~g  183 (689)
T 1yiq_A          120 -WKGKVYVGVLDGRLEAIDAKTGQRAWSVDTR--------AD------HKRSYTITGAPRVVNG-KVVIGNGGAEFGVRG  183 (689)
T ss_dssp             -ETTEEEEECTTSEEEEEETTTCCEEEEEECC--------SC------TTSCCBCCSCCEEETT-EEEECCBCTTTCCBC
T ss_pred             -ECCEEEEEccCCEEEEEECCCCCEeeeecCc--------CC------CCCCccccCCcEEECC-EEEEEeCCCccCCCC
Confidence             2567888889999999999988754221110        00      00001111122   34 444443      368


Q ss_pred             eEEEEcCC-Ccceeecccc-------------------------------cCCeEEEEEccCCCEEEEEecCCc------
Q psy12697        303 YARIWTSD-GSLKSTLGQH-------------------------------KGPIFALKWNKRGNYILSAGVDKT------  344 (602)
Q Consensus       303 ~i~i~~~~-~~~~~~~~~~-------------------------------~~~i~~~~~~~~~~~l~~~~~dg~------  344 (602)
                      .|..||.. |+.+-.+...                               ......++++|+...++.++.++.      
T Consensus       184 ~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~  263 (689)
T 1yiq_A          184 YVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKW  263 (689)
T ss_dssp             EEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHH
T ss_pred             EEEEEECCCCcEEEEecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCC
Confidence            89999975 5554443210                               011125788888888998887763      


Q ss_pred             -------------EEEEeCCCCceeEEeeeccCC---------eeeeeccCCC----eEEEeeCCCeEEEEEcCCCceee
Q psy12697        345 -------------TIIWDAASGQCEQQFSFHSAP---------ALDVDWQSNT----SFASCSTDQHIHVCKLHSDKPVK  398 (602)
Q Consensus       345 -------------i~~wd~~~~~~~~~~~~~~~~---------~~~~~~~~~~----~~~~~~~~~~i~i~d~~~~~~~~  398 (602)
                                   |..+|..+|+.+..++.....         ........++    .++.++.+|.++++|..+++++.
T Consensus       264 ~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~  343 (689)
T 1yiq_A          264 RSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLS  343 (689)
T ss_dssp             HHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEE
T ss_pred             CCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEec
Confidence                         999999999999887653221         1111111123    47888899999999999999874


Q ss_pred             EeccCC-C--------------------------------------CeEEEEECCCCCEEEEEECC--------------
Q psy12697        399 SFEGHT-N--------------------------------------EVNAIKWDPQGLLLASCSDD--------------  425 (602)
Q Consensus       399 ~~~~~~-~--------------------------------------~i~~~~~~~~~~~l~~~~~d--------------  425 (602)
                      ...... .                                      .-..++++|+..++++...+              
T Consensus       344 ~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~  423 (689)
T 1yiq_A          344 AKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKR  423 (689)
T ss_dssp             EEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCC
T ss_pred             cccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccc
Confidence            322110 0                                      01237889988888877543              


Q ss_pred             -------------------------------CeEEEEeCCCCeeeEeeccccccEEEEEECCCCCCCCCCCcceeeeeee
Q psy12697        426 -------------------------------MTLKIWSLDKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKS  474 (602)
Q Consensus       426 -------------------------------g~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~  474 (602)
                                                     |.|+.||+.+++.+.++..+.                            
T Consensus       424 ~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~----------------------------  475 (689)
T 1yiq_A          424 NPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYVT----------------------------  475 (689)
T ss_dssp             CSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEESS----------------------------
T ss_pred             cccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCCC----------------------------
Confidence                                           556666666666555443221                            


Q ss_pred             ccCCccCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeeecccCCC-eeEeeecCCc--eEEEee
Q psy12697        475 TLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAP-ALDVDWQSNT--SFASCS  540 (602)
Q Consensus       475 ~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~-v~~~~~s~~~--~l~~~~  540 (602)
                             ++..-.++..+.+++.++.||.++.||.++|+.+..++...+. ..-+.|..+|  ++++.+
T Consensus       476 -------~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~ty~~~G~qyv~~~~  537 (689)
T 1yiq_A          476 -------IFNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQPAASGVMAAPVTYSVDGEQYVTFMA  537 (689)
T ss_dssp             -------SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEE
T ss_pred             -------CccCccceECCCEEEEECCCCcEEEEECCCCccceeeeCCCCcccCceEEEECCEEEEEEEe
Confidence                   1112244457778999999999999999999999888755332 2446677888  444443

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=99.38  E-value=1.1e-10  Score=121.68  Aligned_cols=331  Identities=10%  Similarity=0.058  Sum_probs=188.3

Q ss_pred             CCEEEEeeCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccC-C-CCce-eEEeeCCCCCeEEEEeCCCeEEEEcCC
Q psy12697        234 KDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVP-S-NKDV-TSLDWNNNGSFLATGSYDGYARIWTSD  310 (602)
Q Consensus       234 ~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~i-~~~~~~~~~~~l~~~~~dg~i~i~~~~  310 (602)
                      +..+++++.++.|.-+|..+++.........        ...... . ...+ ..++.  .+..+++++.|+.|..+|..
T Consensus        70 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~--------~~~~~~~~~~~~~~~~~~~--~~g~v~v~~~dg~l~AlDa~  139 (689)
T 1yiq_A           70 DGVMYTTGPFSVVYALDARDGRLIWKYDPQS--------DRHRAGEACCDAVNRGVAV--WKGKVYVGVLDGRLEAIDAK  139 (689)
T ss_dssp             TTEEEEECGGGCEEEEETTTCCEEEEECCCC--------CGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETT
T ss_pred             CCEEEEEcCCCeEEEEECCCCceeEEEcCCC--------CccccccccccCCCCccEE--ECCEEEEEccCCEEEEEECC
Confidence            5667777778889999988887543322110        000000 0 0000 11111  35678889999999999975


Q ss_pred             -Ccceeecccc--cCCeEEEEEcc---CCCEEEEEe------cCCcEEEEeCCCCceeEEeeeccC-C------------
Q psy12697        311 -GSLKSTLGQH--KGPIFALKWNK---RGNYILSAG------VDKTTIIWDAASGQCEQQFSFHSA-P------------  365 (602)
Q Consensus       311 -~~~~~~~~~~--~~~i~~~~~~~---~~~~l~~~~------~dg~i~~wd~~~~~~~~~~~~~~~-~------------  365 (602)
                       |+.+-.....  ......+..+|   ++ .++.++      .+|.|..||..+|+.+..+..... +            
T Consensus       140 TG~~~W~~~~~~~~~~~~~~~~sP~v~~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~  218 (689)
T 1yiq_A          140 TGQRAWSVDTRADHKRSYTITGAPRVVNG-KVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIA  218 (689)
T ss_dssp             TCCEEEEEECCSCTTSCCBCCSCCEEETT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHH
T ss_pred             CCCEeeeecCcCCCCCCccccCCcEEECC-EEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCccccccccccccc
Confidence             6655444321  11111111112   44 444443      368999999999999887653110 0            


Q ss_pred             ------------------eeeeeccC-CCeEEEeeCCC-------------------eEEEEEcCCCceeeEecc--CC-
Q psy12697        366 ------------------ALDVDWQS-NTSFASCSTDQ-------------------HIHVCKLHSDKPVKSFEG--HT-  404 (602)
Q Consensus       366 ------------------~~~~~~~~-~~~~~~~~~~~-------------------~i~i~d~~~~~~~~~~~~--~~-  404 (602)
                                        -..+.+.+ .+.++++..++                   .|..+|..+++.+..++.  |. 
T Consensus       219 ~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~  298 (689)
T 1yiq_A          219 AKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDA  298 (689)
T ss_dssp             HTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCC
T ss_pred             ccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCccc
Confidence                              01234454 36677777665                   399999999998877654  21 


Q ss_pred             ------CCeEEEEECCCCC---EEEEEECCCeEEEEeCCCCeeeEeeccccc-cEEEEEECCCCCCCC-------CCCcc
Q psy12697        405 ------NEVNAIKWDPQGL---LLASCSDDMTLKIWSLDKDNCVHDLQAHNK-EIYTIKWSPTGPETS-------NPNMS  467 (602)
Q Consensus       405 ------~~i~~~~~~~~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~i~~~~~~~~~~~~~-------~~~~~  467 (602)
                            ..+.......+|+   .++.++.+|.++++|.++++.+........ ....+.... +..+.       .....
T Consensus       299 wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~-~~pi~~~~~~~~~~~~~  377 (689)
T 1yiq_A          299 WDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKT-GRPILDEENAAYWKNGK  377 (689)
T ss_dssp             SCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTT-TEEEECHHHHCTTTSSS
T ss_pred             ccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccC-CCcccchhhccccCCCC
Confidence                  1222222223565   788999999999999999998865443221 111111000 00000       00000


Q ss_pred             eeeeeeeccCCccCCeEEEEEccCCCEEEEEeC---------------------------------------------CC
Q psy12697        468 LIFILKSTLGQHKGPIFALKWNKRGNYILSAGV---------------------------------------------DK  502 (602)
Q Consensus       468 ~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~---------------------------------------------dg  502 (602)
                      ....+.....++  .-..++|+|+..++++...                                             +|
T Consensus       378 ~~~~~p~~~Gg~--~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g  455 (689)
T 1yiq_A          378 RNLVTPAFWGAH--DWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSG  455 (689)
T ss_dssp             CEEESSCTTCSS--CSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEE
T ss_pred             eeEeCCCccccc--CCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcce
Confidence            001111111111  1223677777776665422                                             47


Q ss_pred             eEEEEeCCCCceeeeecccCCCeeEeeecCCc-eEEEeeCCCcEEEeecCCCCceeeeecccccceEEEEecCCcEEEEE
Q psy12697        503 TTIIWDAASGQCEQQFSFHSAPALDVDWQSNT-SFASCSTDQHIHVCKLHSDKPVKSFEGHTTGQLVHSYKGTGGIFEVC  581 (602)
Q Consensus       503 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~-~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~  581 (602)
                      .|..||+.+|+.+..+..+. +.....++..+ .+++++.||.++.||.++++.+..++....          ....-+.
T Consensus       456 ~l~A~D~~tG~~~W~~~~~~-~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~~~~~----------~~~~p~t  524 (689)
T 1yiq_A          456 KLIAWDPVKQQAAWEVPYVT-IFNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQPAASG----------VMAAPVT  524 (689)
T ss_dssp             EEEEEETTTTEEEEEEEESS-SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSC----------CCSCCEE
T ss_pred             eEEEEECCCCCeEeEccCCC-CccCccceECCCEEEEECCCCcEEEEECCCCccceeeeCCCC----------cccCceE
Confidence            89999999999988877543 33444555555 888999999999999998888877654321          1112355


Q ss_pred             ECCCCCeE
Q psy12697        582 WNSRGDKV  589 (602)
Q Consensus       582 ~spdg~~l  589 (602)
                      |..||+..
T Consensus       525 y~~~G~qy  532 (689)
T 1yiq_A          525 YSVDGEQY  532 (689)
T ss_dssp             EEETTEEE
T ss_pred             EEECCEEE
Confidence            67788643

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=99.38  E-value=2.2e-14  Score=138.09  Aligned_cols=221  Identities=13%  Similarity=0.116  Sum_probs=125.0

Q ss_pred             CCCeEEEEeCCCeEEEEcCC-CcceeecccccCCeEEEEEccCCCEEEEEecCCcEEEEeCCCCceeEEeeeccCC-ee-
Q psy12697        291 NGSFLATGSYDGYARIWTSD-GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAP-AL-  367 (602)
Q Consensus       291 ~~~~l~~~~~dg~i~i~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~-~~-  367 (602)
                      ++..+++++.||.|+.||.. |+....+..  +.+.+..+..++..+++++.||.+..||..+++.+..+..+... +. 
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~   85 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQA   85 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTT
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCcccccc
Confidence            46789999999999999965 666655554  45555555667777888889999999999999887766543211 11 


Q ss_pred             eeeccCCCeEEEeeCCCeEEEEEcCCCceeeEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeeeEeeccccc
Q psy12697        368 DVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHDLQAHNK  447 (602)
Q Consensus       368 ~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~  447 (602)
                      ......++.+++++.++.++.||..+++.+..+..+.    ...++|++..+++++.|+.|+.||.++++.+..+.... 
T Consensus        86 sp~~~~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~-  160 (369)
T 2hz6_A           86 SPCRSSDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF----ADSLSPSTSLLYLGRTEYTITMYDTKTRELRWNATYFD-  160 (369)
T ss_dssp             CSCC-----CCCCEEEEEEEEECCC--------------------------EEEEEEEEEEECCCSSSSSCCCEEEEEE-
T ss_pred             CceEecCCEEEEEeCCCEEEEEECCCCcEEEEecCCC----cccccccCCEEEEEecCCEEEEEECCCCCEEEeEeccc-
Confidence            1122245678888899999999999999887776553    23556788899999999999999999988776654211 


Q ss_pred             cEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccC---CCEEEEEeCCCeEEEEeCCCCceeeeecccCCC
Q psy12697        448 EIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKR---GNYILSAGVDKTTIIWDAASGQCEQQFSFHSAP  524 (602)
Q Consensus       448 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~---~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~  524 (602)
                            +.+                             ..++++   ...+++++.||.|+.||..+|+.+..+.. ..+
T Consensus       161 ------~~~-----------------------------~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~-~~p  204 (369)
T 2hz6_A          161 ------YAA-----------------------------SLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQNY-ASP  204 (369)
T ss_dssp             ------ECC-----------------------------BCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEEC-SSC
T ss_pred             ------ccC-----------------------------ccccCCccccceEEEECCCCEEEEEECCCCcEEEEecC-CCc
Confidence                  100                             011111   14567788999999999999998877763 344


Q ss_pred             ee-EeeecCCceEEE---eeCCCcEEEeecCCCC
Q psy12697        525 AL-DVDWQSNTSFAS---CSTDQHIHVCKLHSDK  554 (602)
Q Consensus       525 v~-~~~~s~~~~l~~---~~~d~~i~iw~~~~~~  554 (602)
                      +. ...+++++.+..   ...++.++.+|..+++
T Consensus       205 v~~~~~~~~dg~~~v~~~~~~~~~l~~ld~~tG~  238 (369)
T 2hz6_A          205 VVAFYVWQREGLRKVMHINVAVETLRYLTFMSGE  238 (369)
T ss_dssp             EEEEEECTTSSCEEECCEEEEHHHHHHHHHHHHH
T ss_pred             eEEEEEecCCceEeccceeecccceeeeehhcCC
Confidence            43 445667773211   0114456666655544

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=99.38  E-value=6.7e-11  Score=112.02  Aligned_cols=273  Identities=10%  Similarity=-0.045  Sum_probs=168.2

Q ss_pred             ceeeeecccceeeeeeeccCCceEEEEECCCCCeEEEee----------CCceEEEEecCCceeEEEeeccCceEEEEeC
Q psy12697        121 TLPLWDVERGECLNTLTRHTEPVYSVAFSPDGKFLASGS----------FDKCVHIWSARTGQLVHSYKGTGGIFEVCWN  190 (602)
Q Consensus       121 ~i~vwd~~~~~~~~~l~~h~~~V~~~~~s~d~~~l~s~~----------~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~  190 (602)
                      +|.+.|..+++.+.++..-..+  .+.|+||+++|+.+.          .++.|.+||+.+++.+.++..+++       
T Consensus        47 ~vsvID~~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~-------  117 (368)
T 1mda_H           47 ENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDA-------  117 (368)
T ss_dssp             EEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTS-------
T ss_pred             eEEEEECCCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCc-------
Confidence            7889999999999999766666  799999999998886          478899999999888766532100       


Q ss_pred             CCCCCCCCCCCccccccccccCCcceEeeCCCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCccceEEEEEEe
Q psy12697        191 SRGTPPNPPESMEVDASIEIPQSKATKLIGHESEVFICAWNPVKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCI  270 (602)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~  270 (602)
                                                                                     .+..             
T Consensus       118 ---------------------------------------------------------------~~~~-------------  121 (368)
T 1mda_H          118 ---------------------------------------------------------------PRFS-------------  121 (368)
T ss_dssp             ---------------------------------------------------------------CSCC-------------
T ss_pred             ---------------------------------------------------------------cccc-------------
Confidence                                                                           0000             


Q ss_pred             cCCCcccCCCCceeEEeeCCCCCeEEEEeC--CCeEEE--EcCCCcceeecccccCCeEEEEEccCC-CEEEEEecCCcE
Q psy12697        271 SKGGTEVPSNKDVTSLDWNNNGSFLATGSY--DGYARI--WTSDGSLKSTLGQHKGPIFALKWNKRG-NYILSAGVDKTT  345 (602)
Q Consensus       271 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~--dg~i~i--~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i  345 (602)
                              .......++++|||++++++..  +..+.+  +|...  ...+.. .+.   ..+.|++ ..+++.+.||.+
T Consensus       122 --------~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t--v~~i~v-~~~---~~~~p~g~~~~~~~~~dg~~  187 (368)
T 1mda_H          122 --------VGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD--DQLTKS-ASC---FHIHPGAAATHYLGSCPASL  187 (368)
T ss_dssp             --------BSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE--EEEEEC-SSC---CCCEEEETTEEECCCCTTSC
T ss_pred             --------cCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh--ceEEEC-CCc---eEEccCCCeEEEEEcCCCCE
Confidence                    0011234556666666666543  244556  66543  222211 011   1123333 334455667777


Q ss_pred             EEEeCCC-----CceeE----EeeeccCCeeeeeccCCCeEEEeeCCCeEEEEEcCCCc--eeeEecc-------CC---
Q psy12697        346 IIWDAAS-----GQCEQ----QFSFHSAPALDVDWQSNTSFASCSTDQHIHVCKLHSDK--PVKSFEG-------HT---  404 (602)
Q Consensus       346 ~~wd~~~-----~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~--~~~~~~~-------~~---  404 (602)
                      .+.|+.+     ++...    .+.....+.   ....++.++..+. +.+.+.|.....  .+..+..       +.   
T Consensus       188 ~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~---~~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p  263 (368)
T 1mda_H          188 AASDLAAAPAAAGIVGAQCTGAQNCSSQAA---QANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRS  263 (368)
T ss_dssp             EEEECCSSCCCCEECCCCSCTTSCBCSCCE---EETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEE
T ss_pred             EEEECccccccCCeEEEEeeeeeeCCCCcc---ccccCCEEEEEcC-CEEEEEECCCCcceEEEEEEecccccccccccc
Confidence            7777776     33221    111222233   2445566666666 999999986542  2222211       00   


Q ss_pred             CCeEEEEECCCCCEEEEEEC---------CCeEEEEeCCCCeeeEeeccccccEEEEEECCCCCCCCCCCcceeeeeeec
Q psy12697        405 NEVNAIKWDPQGLLLASCSD---------DMTLKIWSLDKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKST  475 (602)
Q Consensus       405 ~~i~~~~~~~~~~~l~~~~~---------dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~  475 (602)
                      .....++++|+++.++++..         ++.+.++|+.+.+.+.++....                             
T Consensus       264 ~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~-----------------------------  314 (368)
T 1mda_H          264 AGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGH-----------------------------  314 (368)
T ss_dssp             CSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEE-----------------------------
T ss_pred             CcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCC-----------------------------
Confidence            11222789999998887643         2356699999998887765322                             


Q ss_pred             cCCccCCeEEEEEccCCC-EEEEEe-CCCeEEEEeCCCCceeeeecccCCCeeEeeecC
Q psy12697        476 LGQHKGPIFALKWNKRGN-YILSAG-VDKTTIIWDAASGQCEQQFSFHSAPALDVDWQS  532 (602)
Q Consensus       476 ~~~~~~~v~~i~~s~~~~-~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~  532 (602)
                            ....++|+|||+ ++++.. .++.|.++|+.+++.+.++..... ...+++.+
T Consensus       315 ------~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~~I~vg~~-P~~i~~~~  366 (368)
T 1mda_H          315 ------DSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELDKG-PESLSVQN  366 (368)
T ss_dssp             ------EECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCCCSC-CCEEECCC
T ss_pred             ------CcceEEECCCCCEEEEEccCCCCeEEEEECCCCcEEEEEECCCC-CCEEEeec
Confidence                  245677788887 456666 599999999999999998885543 34555543

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.38  E-value=8.4e-11  Score=123.46  Aligned_cols=241  Identities=8%  Similarity=0.041  Sum_probs=155.4

Q ss_pred             CCCcceEEEEEcCCCCEEEEe-----eCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEeeCCCCCe
Q psy12697        220 GHESEVFICAWNPVKDFLASG-----SGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSF  294 (602)
Q Consensus       220 ~h~~~v~~~~~~~~~~~l~s~-----~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  294 (602)
                      +|...+..++|||||++||.+     +....|++||+.+++...     ....            ......++|+ |++.
T Consensus       126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~-----~~~~------------~~k~~~~~Ws-Dg~~  187 (693)
T 3iuj_A          126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLE-----TPLK------------DVKFSGISWL-GNEG  187 (693)
T ss_dssp             TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEE-----EEEE------------EEESCCCEEE-TTTE
T ss_pred             CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCc-----cccC------------CceeccEEEe-CCCE
Confidence            355678899999999988853     233579999999876321     1100            0113578899 9999


Q ss_pred             EEEEeCCC-------------eEEEEcCCCcc-----eeeccc-ccCCeEEEEEccCCCEEEEEec----CCcEEEEeCC
Q psy12697        295 LATGSYDG-------------YARIWTSDGSL-----KSTLGQ-HKGPIFALKWNKRGNYILSAGV----DKTTIIWDAA  351 (602)
Q Consensus       295 l~~~~~dg-------------~i~i~~~~~~~-----~~~~~~-~~~~i~~~~~~~~~~~l~~~~~----dg~i~~wd~~  351 (602)
                      |+.+..+.             .|++|++....     +..... |...+..+.|+|||++|+....    ++.+.++|+.
T Consensus       188 l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~  267 (693)
T 3iuj_A          188 FFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLS  267 (693)
T ss_dssp             EEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETT
T ss_pred             EEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECC
Confidence            99888774             38999876332     222233 4456789999999998865443    2589999998


Q ss_pred             CCc-eeEEeeeccCCeeeeeccCCCeEEEeeC----CCeEEEEEcCCCce--eeEeccCCCCeEEEEECCCCCEEEEEEC
Q psy12697        352 SGQ-CEQQFSFHSAPALDVDWQSNTSFASCST----DQHIHVCKLHSDKP--VKSFEGHTNEVNAIKWDPQGLLLASCSD  424 (602)
Q Consensus       352 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~i~i~d~~~~~~--~~~~~~~~~~i~~~~~~~~~~~l~~~~~  424 (602)
                      ++. ....+..+..........+++.++..+.    .+.|..+++.++..  ...+..|...+.  .|+++++.|+....
T Consensus       268 ~~~~~~~~l~~~~~~~~~~~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~  345 (693)
T 3iuj_A          268 QENAPLLTVQGDLDADVSLVDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEYM  345 (693)
T ss_dssp             STTCCCEEEECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEEEEE
T ss_pred             CCCCceEEEeCCCCceEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEEEEEE
Confidence            764 3444444444444433344555554443    36799999988654  345666666655  88999988877765


Q ss_pred             CC---eEEEEeCCCCeeeEeeccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCC
Q psy12697        425 DM---TLKIWSLDKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVD  501 (602)
Q Consensus       425 dg---~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d  501 (602)
                      ++   .|++||+..+. ...+...                                 ..+.+..+.++++++.++....+
T Consensus       346 ~~g~~~l~~~d~~g~~-~~~l~~p---------------------------------~~~~~~~~~~~~d~~~l~~~~ss  391 (693)
T 3iuj_A          346 VDATARVEQFDYEGKR-VREVALP---------------------------------GLGSVSGFNGKHDDPALYFGFEN  391 (693)
T ss_dssp             ETTEEEEEEECTTSCE-EEEECCS---------------------------------SSSEEEECCCCTTCSCEEEEEEC
T ss_pred             ECCeeEEEEEECCCCe-eEEeecC---------------------------------CCceEEeeecCCCCCEEEEEecC
Confidence            43   68899887443 2332211                                 12234455566677666655444


Q ss_pred             ----CeEEEEeCCCCce
Q psy12697        502 ----KTTIIWDAASGQC  514 (602)
Q Consensus       502 ----g~i~iwd~~~~~~  514 (602)
                          +.++.||+.+++.
T Consensus       392 ~~tP~~l~~~d~~~g~~  408 (693)
T 3iuj_A          392 YAQPPTLYRFEPKSGAI  408 (693)
T ss_dssp             SSSCCEEEEECTTTCCE
T ss_pred             CCCCCEEEEEECCCCeE
Confidence                7899999987764

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=99.36  E-value=6.4e-11  Score=112.15  Aligned_cols=264  Identities=9%  Similarity=-0.054  Sum_probs=166.0

Q ss_pred             cEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEeeCCCCCeEEEEe----------CCCeEEEEcCC-Ccc
Q psy12697        245 TARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFLATGS----------YDGYARIWTSD-GSL  313 (602)
Q Consensus       245 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~----------~dg~i~i~~~~-~~~  313 (602)
                      +|.+.|..+.+.......               . ..+  .+.++||+++++++.          .++.|.+||.. ++.
T Consensus        47 ~vsvID~~t~~v~~~i~v---------------G-~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~v  108 (368)
T 1mda_H           47 ENWVSCAGCGVTLGHSLG---------------A-FLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLP  108 (368)
T ss_dssp             EEEEEETTTTEEEEEEEE---------------C-TTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCE
T ss_pred             eEEEEECCCCeEEEEEeC---------------C-CCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCE
Confidence            788999887754321110               0 133  799999999999886          36889999987 455


Q ss_pred             eeecccc-------cCCeEEEEEccCCCEEEEEec--CCcEEE--EeCCCCceeEEeeeccCCeeeeeccCCCeEEEeeC
Q psy12697        314 KSTLGQH-------KGPIFALKWNKRGNYILSAGV--DKTTII--WDAASGQCEQQFSFHSAPALDVDWQSNTSFASCST  382 (602)
Q Consensus       314 ~~~~~~~-------~~~i~~~~~~~~~~~l~~~~~--dg~i~~--wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  382 (602)
                      ...+...       ......+.++|||++++++..  +..+.+  +|+.+   +..+.....  ..+.......+++.+.
T Consensus       109 v~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~~~--~~~~p~g~~~~~~~~~  183 (368)
T 1mda_H          109 IADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSASC--FHIHPGAAATHYLGSC  183 (368)
T ss_dssp             EEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECSSC--CCCEEEETTEEECCCC
T ss_pred             EEEEECCCccccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECCCc--eEEccCCCeEEEEEcC
Confidence            5555322       123568999999999998874  467888  99877   344432211  1122223345677778


Q ss_pred             CCeEEEEEcCC-----Cceee----EeccCCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCe--eeEeeccccccEEE
Q psy12697        383 DQHIHVCKLHS-----DKPVK----SFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDN--CVHDLQAHNKEIYT  451 (602)
Q Consensus       383 ~~~i~i~d~~~-----~~~~~----~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~i~~  451 (602)
                      ||.+.+.|+.+     ++...    .+.....+.   . ++++..++..+. +.|.+.|+.+..  .+..+........ 
T Consensus       184 dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~---~-~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~-  257 (368)
T 1mda_H          184 PASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAA---Q-ANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRK-  257 (368)
T ss_dssp             TTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCE---E-ETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHH-
T ss_pred             CCCEEEEECccccccCCeEEEEeeeeeeCCCCcc---c-cccCCEEEEEcC-CEEEEEECCCCcceEEEEEEecccccc-
Confidence            88888888876     33221    111112233   3 566666666666 899999986432  2221111000000 


Q ss_pred             EEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeC---------CCeEEEEeCCCCceeeeecccC
Q psy12697        452 IKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGV---------DKTTIIWDAASGQCEQQFSFHS  522 (602)
Q Consensus       452 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~---------dg~i~iwd~~~~~~~~~~~~~~  522 (602)
                                             ...........++++||++.+..+..         ++.+.++|+.+++.+..+....
T Consensus       258 -----------------------~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~  314 (368)
T 1mda_H          258 -----------------------ADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGH  314 (368)
T ss_dssp             -----------------------HTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEE
T ss_pred             -----------------------ccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCC
Confidence                                   00001111222678999988876543         2356699999999998887544


Q ss_pred             CCeeEeeecCCc--eEEEee-CCCcEEEeecCCCCceeeeec
Q psy12697        523 APALDVDWQSNT--SFASCS-TDQHIHVCKLHSDKPVKSFEG  561 (602)
Q Consensus       523 ~~v~~~~~s~~~--~l~~~~-~d~~i~iw~~~~~~~~~~~~~  561 (602)
                       ....++|+|||  .+++.. .++.|.++|+.+++.+.+++.
T Consensus       315 -~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~~I~v  355 (368)
T 1mda_H          315 -DSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVEL  355 (368)
T ss_dssp             -EECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCC
T ss_pred             -CcceEEECCCCCEEEEEccCCCCeEEEEECCCCcEEEEEEC
Confidence             57899999999  455666 599999999998888777764

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=99.34  E-value=9.6e-08  Score=101.98  Aligned_cols=432  Identities=10%  Similarity=0.040  Sum_probs=244.7

Q ss_pred             ceeeeecccceeeeeee-----ccCCceEEEEECCCCCeEEEeeCCceEEEEecCCceeEEEee--------ccCceEEE
Q psy12697        121 TLPLWDVERGECLNTLT-----RHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYK--------GTGGIFEV  187 (602)
Q Consensus       121 ~i~vwd~~~~~~~~~l~-----~h~~~V~~~~~s~d~~~l~s~~~d~~v~iwd~~~~~~~~~~~--------~~~~~~~~  187 (602)
                      -|..+|..+++......     -....|.++...++|.+.+ ++.++-|..||..+++......        ....+..+
T Consensus       138 gl~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lwi-gt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i  216 (781)
T 3v9f_A          138 GIEYLDIATGKFTHYNKSTVPALPSEQTWTATEAEDGKLYI-GHVEGGLSILSLNDKSVKHFVHDPQNPNSLPGNDVRCI  216 (781)
T ss_dssp             CEEEEETTTTEEEEESTTTCTTCSCCCEEEEEEEETTEEEE-EETTTEEEEEETTTTEEEEECC--------CCSSEEEE
T ss_pred             CeeEEECCCCeEEeeccCcccCCCccceEEEEECCCCCEEE-EecCCCeEEEcCCCCceEeeecCCCCcccCCCCceeEE
Confidence            46667766655432211     1235688888888887666 4555458889988775433211        12346667


Q ss_pred             EeCCCCCCCCCCCCccccccccccCCcceEee--------CCCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCC
Q psy12697        188 CWNSRGTPPNPPESMEVDASIEIPQSKATKLI--------GHESEVFICAWNPVKDFLASGSGDSTARIWDMTDSTKKDP  259 (602)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--------~h~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~  259 (602)
                      ....++........ .. ..+.........+.        -....|.++...+++. |..|+..+-|.+++..+......
T Consensus       217 ~~d~~g~lwigt~~-Gl-~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~  293 (781)
T 3v9f_A          217 YKDTNGNIWIGTSK-GL-ALFNANTETFTNFHNNPGNIHGALSSYIFSIKQLKDNK-LWIATELNGIMILDLQQNQFLLP  293 (781)
T ss_dssp             EECTTCCEEEEETT-EE-EEEETTTTEEEC-----------CCCCEEEEEECTTSE-EEEEESSSCEEEEETTCC-----
T ss_pred             EEcCCCCEEEEeCC-cH-heECCCCCcEEEEEcCCCccccccCceEEEEEECCCCC-EEEEeCCCCeEEECCCCCeeeee
Confidence            66666654433221 11 11111111111110        1245688888887776 45556645678888876543211


Q ss_pred             ccceEEEEEEecCCCcccCCCCceeEEeeCCCCCeEEEEeCCCeEEEEcCCCcceeecc----------cccCCeEEEEE
Q psy12697        260 KELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFLATGSYDGYARIWTSDGSLKSTLG----------QHKGPIFALKW  329 (602)
Q Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~----------~~~~~i~~~~~  329 (602)
                      ....  .................|.++...++|. |-+|+.++-|..++........+.          .....|.++..
T Consensus       294 ~~~~--f~~~~~~~~~~~l~~~~v~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~  370 (781)
T 3v9f_A          294 EQIR--FEFIREGDNNYSLSNASARYIFQDSFNN-IWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCD  370 (781)
T ss_dssp             ------CEEECBCSSTTSBSSSCEEEEEECSSCC-EEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEE
T ss_pred             eccc--cccccCCCCCCCCCCCeEEEEEEeCCCC-EEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcceEEEEE
Confidence            1000  0000000001112246799999998886 566777777888887654433331          12356899998


Q ss_pred             ccCCCEEEEEecCCcEEEEeCCCCceeEEe---eeccCCeeeeeccCCCeEEEeeCCCeEEEEEcCCCceeeEec--cCC
Q psy12697        330 NKRGNYILSAGVDKTTIIWDAASGQCEQQF---SFHSAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFE--GHT  404 (602)
Q Consensus       330 ~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~--~~~  404 (602)
                      .++++ |..|+.++-+..||..++......   ......+.++...+++.+.+|+.++-+..++..+++......  ...
T Consensus       371 d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~  449 (781)
T 3v9f_A          371 DGQGK-LWIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDSEGNLWFGTYLGNISYYNTRLKKFQIIELEKNEL  449 (781)
T ss_dssp             CTTSC-EEEEEBSSCEEEEETTEEEEECC-----CCCSBEEEEEECTTSCEEEEETTEEEEEECSSSCEEEECCSTTTCC
T ss_pred             cCCCC-EEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECCCCCEEEEeccCCEEEEcCCCCcEEEeccCCCCC
Confidence            88876 555666666889987654332211   123456778887778888889888889999987765332211  234


Q ss_pred             CCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeeeEeeccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeE
Q psy12697        405 NEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIF  484 (602)
Q Consensus       405 ~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  484 (602)
                      ..|.++..++++.+. .|+. +-|..||..+++..........                             ......|.
T Consensus       450 ~~v~~i~~d~~g~lw-igt~-~Gl~~~~~~~~~~~~~~~~~~~-----------------------------~~~~~~i~  498 (781)
T 3v9f_A          450 LDVRVFYEDKNKKIW-IGTH-AGVFVIDLASKKVIHHYDTSNS-----------------------------QLLENFVR  498 (781)
T ss_dssp             CCEEEEEECTTSEEE-EEET-TEEEEEESSSSSCCEEECTTTS-----------------------------SCSCSCEE
T ss_pred             CeEEEEEECCCCCEE-EEEC-CceEEEeCCCCeEEecccCccc-----------------------------ccccceeE
Confidence            679999999888654 4555 4588898776543221110000                             00135677


Q ss_pred             EEEEccCCCEEEEEeCCCeEEEEeCCCCceeeeecc---cCCCeeEeeecCCceEEEeeCCCcEEEeecCCCCceeeeec
Q psy12697        485 ALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSF---HSAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEG  561 (602)
Q Consensus       485 ~i~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~---~~~~v~~~~~s~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~  561 (602)
                      ++...++|++.+....+| |..||..+++.......   ....|.++...++|.|-.++.+|-|..||..+++. ..+..
T Consensus       499 ~i~~d~~g~lWigt~~~G-l~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~T~~Glv~~~d~~~~~~-~~~~~  576 (781)
T 3v9f_A          499 SIAQDSEGRFWIGTFGGG-VGIYTPDMQLVRKFNQYEGFCSNTINQIYRSSKGQMWLATGEGLVCFPSARNFDY-QVFQR  576 (781)
T ss_dssp             EEEECTTCCEEEEESSSC-EEEECTTCCEEEEECTTTTCSCSCEEEEEECTTSCEEEEETTEEEEESCTTTCCC-EEECG
T ss_pred             EEEEcCCCCEEEEEcCCC-EEEEeCCCCeEEEccCCCCCCCCeeEEEEECCCCCEEEEECCCceEEECCCCCcE-EEccc
Confidence            888888887655443344 88899876654322111   23468899998899555555666558898766542 22211


Q ss_pred             ccccceEEEEecCCcEEEEEECCCCCeEEEeccCCeEEee
Q psy12697        562 HTTGQLVHSYKGTGGIFEVCWNSRGDKVGASASDGSVFKN  601 (602)
Q Consensus       562 ~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~v~i~  601 (602)
                       ..|-      ....|.++..+++|.+.+ ++.+|..+++
T Consensus       577 -~~gl------~~~~i~~i~~d~~g~lW~-~t~~Gl~~~~  608 (781)
T 3v9f_A          577 -KEGL------PNTHIRAISEDKNGNIWA-STNTGISCYI  608 (781)
T ss_dssp             -GGTC------SCCCCCEEEECSSSCEEE-ECSSCEEEEE
T ss_pred             -cCCC------CCceEEEEEECCCCCEEE-EcCCceEEEE
Confidence             1110      023577888888887554 4567766654

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=99.34  E-value=9.1e-11  Score=121.91  Aligned_cols=313  Identities=7%  Similarity=0.014  Sum_probs=184.3

Q ss_pred             CCEEEEeeCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccC---CCCceeEEeeCCCCCeEEEEeCCCeEEEEcCC
Q psy12697        234 KDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVP---SNKDVTSLDWNNNGSFLATGSYDGYARIWTSD  310 (602)
Q Consensus       234 ~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~  310 (602)
                      +..++.++.++.|.-+|..+++..........        ....+   .......+++  ++..+++++.|+.|..+|..
T Consensus        77 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~--------~~~~~~~~~~~~~~~~a~--~~~~v~v~~~dg~l~alD~~  146 (677)
T 1kb0_A           77 DGIMYVSASWSVVHAIDTRTGNRIWTYDPQID--------RSTGFKGCCDVVNRGVAL--WKGKVYVGAWDGRLIALDAA  146 (677)
T ss_dssp             TTEEEEECGGGCEEEEETTTTEEEEEECCCCC--------GGGGGGSSSCSCCCCCEE--ETTEEEEECTTSEEEEEETT
T ss_pred             CCEEEEECCCCeEEEEECCCCcEEEEEcCCCC--------ccccccccccCCCCCceE--ECCEEEEEcCCCEEEEEECC
Confidence            55666677778888888877765432221100        00000   0000011222  45678888999999999975


Q ss_pred             -Ccceeecccc-c----CCeEEEEEccCCCEEEEEec------CCcEEEEeCCCCceeEEeeeccCCe------------
Q psy12697        311 -GSLKSTLGQH-K----GPIFALKWNKRGNYILSAGV------DKTTIIWDAASGQCEQQFSFHSAPA------------  366 (602)
Q Consensus       311 -~~~~~~~~~~-~----~~i~~~~~~~~~~~l~~~~~------dg~i~~wd~~~~~~~~~~~~~~~~~------------  366 (602)
                       |+.+..+... .    ..+..--.. .+..+++++.      ++.|..+|..+|+.+..+.......            
T Consensus       147 tG~~~W~~~~~~~~~~~~~~~~~p~v-~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g  225 (677)
T 1kb0_A          147 TGKEVWHQNTFEGQKGSLTITGAPRV-FKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRA  225 (677)
T ss_dssp             TCCEEEEEETTTTCCSSCBCCSCCEE-ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHH
T ss_pred             CCCEEeeecCCcCcCcCcccccCcEE-ECCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCccccccccccccc
Confidence             6666555433 1    111110001 2345555553      6899999999999988776432210            


Q ss_pred             --------------------eeeeccCC-CeEEEeeCCC-------------------eEEEEEcCCCceeeEecc--CC
Q psy12697        367 --------------------LDVDWQSN-TSFASCSTDQ-------------------HIHVCKLHSDKPVKSFEG--HT  404 (602)
Q Consensus       367 --------------------~~~~~~~~-~~~~~~~~~~-------------------~i~i~d~~~~~~~~~~~~--~~  404 (602)
                                          ..+.+.++ +.++++..++                   .|..+|..+++.+..++.  |.
T Consensus       226 ~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d  305 (677)
T 1kb0_A          226 ARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGD  305 (677)
T ss_dssp             HTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTC
T ss_pred             cccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCc
Confidence                                12344443 5666666553                   599999999998877653  21


Q ss_pred             -------CCeEEEEECCCC---CEEEEEECCCeEEEEeCCCCeeeEeecccccc-EEEEEECCCCCCCCCC----Cccee
Q psy12697        405 -------NEVNAIKWDPQG---LLLASCSDDMTLKIWSLDKDNCVHDLQAHNKE-IYTIKWSPTGPETSNP----NMSLI  469 (602)
Q Consensus       405 -------~~i~~~~~~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-i~~~~~~~~~~~~~~~----~~~~~  469 (602)
                             .....+....+|   +.++.++.+|.++++|..+++.+..+...... ...+.  ..+......    .....
T Consensus       306 ~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d--~~g~~~~~~~~~~~~~~~  383 (677)
T 1kb0_A          306 NWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYD--KHGKPIGIAAARDGSKPQ  383 (677)
T ss_dssp             CSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEC--TTSCEEECGGGGCTTSCE
T ss_pred             ccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccC--CCCceeeccccCcCCCcc
Confidence                   122233333467   68999999999999999999988776532211 11110  111000000    00000


Q ss_pred             eeeeeccCCccCCeEEEEEccCCCEEEEEeC-------------------------------------------CCeEEE
Q psy12697        470 FILKSTLGQHKGPIFALKWNKRGNYILSAGV-------------------------------------------DKTTII  506 (602)
Q Consensus       470 ~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~-------------------------------------------dg~i~i  506 (602)
                      ..+-....+ . .-..++++|++.++++...                                           .|.|..
T Consensus       384 ~~~P~~~G~-~-~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A  461 (677)
T 1kb0_A          384 DAVPGPYGA-H-NWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLA  461 (677)
T ss_dssp             ECSSCTTCS-S-CSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEE
T ss_pred             EECcCcccc-c-CCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEE
Confidence            000000111 1 1135778888877776543                                           278999


Q ss_pred             EeCCCCceeeeecccCCCeeEeeecCCc-eEEEeeCCCcEEEeecCCCCceeeeecc
Q psy12697        507 WDAASGQCEQQFSFHSAPALDVDWQSNT-SFASCSTDQHIHVCKLHSDKPVKSFEGH  562 (602)
Q Consensus       507 wd~~~~~~~~~~~~~~~~v~~~~~s~~~-~l~~~~~d~~i~iw~~~~~~~~~~~~~~  562 (602)
                      ||+.+++.+..+. +..++....+..++ .+++++.||.+++||..+++.+..+...
T Consensus       462 ~D~~tG~~~W~~~-~~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~~  517 (677)
T 1kb0_A          462 WDPVAQKAAWSVE-HVSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTG  517 (677)
T ss_dssp             EETTTTEEEEEEE-ESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred             EeCCCCcEEeecC-CCCCCcCcceEeCCCEEEEECCCCcEEEEECCCCceeeeeeCC
Confidence            9999999888776 34455555666666 8888999999999999999988877643

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=99.30  E-value=5.2e-12  Score=121.49  Aligned_cols=186  Identities=9%  Similarity=0.033  Sum_probs=111.6

Q ss_pred             CCCEEEEEecCCcEEEEeCCCCceeEEeeeccCCeeeeeccCCC-eEEEeeCCCeEEEEEcCCCceeeEeccCCCC-eE-
Q psy12697        332 RGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNT-SFASCSTDQHIHVCKLHSDKPVKSFEGHTNE-VN-  408 (602)
Q Consensus       332 ~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~-i~-  408 (602)
                      ++..+++++.||.|..||..+|+.+..+..  ..+.+..+..++ .+++++.|+.|+.||..+++.+..+..+... +. 
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~   85 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQA   85 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTT
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCcccccc
Confidence            567899999999999999999999988876  444444444454 6677789999999999998876665433211 10 


Q ss_pred             EEEECCCCCEEEEEECCCeEEEEeCCCCeeeEeeccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEE
Q psy12697        409 AIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKW  488 (602)
Q Consensus       409 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~  488 (602)
                      +..+. .+..+++++.|+.|+.||..+++.+..+..+..                                      ..+
T Consensus        86 sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~~--------------------------------------~~~  126 (369)
T 2hz6_A           86 SPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQTLSSAFA--------------------------------------DSL  126 (369)
T ss_dssp             CSCC------CCCCEEEEEEEEECCC------------------------------------------------------
T ss_pred             CceEe-cCCEEEEEeCCCEEEEEECCCCcEEEEecCCCc--------------------------------------ccc
Confidence            00111 345678888899999999999988776654320                                      123


Q ss_pred             ccCCCEEEEEeCCCeEEEEeCCCCceeeeecccCCCeeEeeecCC----ceEEEeeCCCcEEEeecCCCCceeeee
Q psy12697        489 NKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSN----TSFASCSTDQHIHVCKLHSDKPVKSFE  560 (602)
Q Consensus       489 s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~----~~l~~~~~d~~i~iw~~~~~~~~~~~~  560 (602)
                      +|++..+++++.|+.|+.||..+|+.+..+..+.  ....++.++    +.+++++.||.|+.||..+++.+....
T Consensus       127 ~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~--~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~  200 (369)
T 2hz6_A          127 SPSTSLLYLGRTEYTITMYDTKTRELRWNATYFD--YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQN  200 (369)
T ss_dssp             ------EEEEEEEEEEECCCSSSSSCCCEEEEEE--ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEE
T ss_pred             cccCCEEEEEecCCEEEEEECCCCCEEEeEeccc--ccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEec
Confidence            3467788999999999999999999876655322  233344442    567788999999999988887665544

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.29  E-value=2.6e-10  Score=108.81  Aligned_cols=284  Identities=13%  Similarity=0.059  Sum_probs=161.7

Q ss_pred             CceEEEEECCCCCeEEEee--CCceEEEEecCCceeEEEeeccCceEEEEeCCCCCCCCCCCCccccccccccCCcceEe
Q psy12697        141 EPVYSVAFSPDGKFLASGS--FDKCVHIWSARTGQLVHSYKGTGGIFEVCWNSRGTPPNPPESMEVDASIEIPQSKATKL  218 (602)
Q Consensus       141 ~~V~~~~~s~d~~~l~s~~--~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  218 (602)
                      ..+..++++|+|+++++..  .++.++||.+.+++.. .+....                                 ...
T Consensus        17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~~-~~p~~~---------------------------------~~~   62 (343)
T 2qe8_A           17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGLI-PFPPQS---------------------------------GNA   62 (343)
T ss_dssp             SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEEE-ESCCCC---------------------------------SSC
T ss_pred             CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCee-cCCCcc---------------------------------cCc
Confidence            6889999999999998864  2343666766555422 221000                                 001


Q ss_pred             eCCCcceEEEEEcCCCCEEEEeeC-----CCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEeeCCCCC
Q psy12697        219 IGHESEVFICAWNPVKDFLASGSG-----DSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGS  293 (602)
Q Consensus       219 ~~h~~~v~~~~~~~~~~~l~s~~~-----dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  293 (602)
                      .+|...+..+++.++++++++-..     ++.|.+||+.+++....        ...  ......+...+..+++++++.
T Consensus        63 ~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~--------~~~--~~~~~~~~~~~~~v~vd~~~g  132 (343)
T 2qe8_A           63 IITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRV--------IYL--PPPITLSNSFVNDLAVDLIHN  132 (343)
T ss_dssp             CCCCSCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEE--------EEC--CTTTSCTTCCCCEEEEETTTT
T ss_pred             ccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEE--------EEC--ChhhcccccccceEEEecCCC
Confidence            246678999999999876665443     57899999987642110        001  001112234568899998654


Q ss_pred             eE-EEEe---CCCeEEEEcCC-CcceeecccccCCeE-EEEEccCCCEEEEEecCCcEEEEeCCCCceeEEeeeccCCee
Q psy12697        294 FL-ATGS---YDGYARIWTSD-GSLKSTLGQHKGPIF-ALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPAL  367 (602)
Q Consensus       294 ~l-~~~~---~dg~i~i~~~~-~~~~~~~~~~~~~i~-~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~  367 (602)
                      .+ ++..   .++.|.+||.. +.....+..|..... ...+.++|..+.+.+.++.+..|.                  
T Consensus       133 ~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~------------------  194 (343)
T 2qe8_A          133 FVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPH------------------  194 (343)
T ss_dssp             EEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCC------------------
T ss_pred             EEEEEcCccCCCCeEEEEECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceecee------------------
Confidence            54 4444   57889999986 444444433322110 022333444444444444332221                  


Q ss_pred             eeeccCCCeEEEeeCCCeEEEEEcCCCceeeEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeeeE-eecc--
Q psy12697        368 DVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVH-DLQA--  444 (602)
Q Consensus       368 ~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~-~~~~--  444 (602)
                                                           ..+..++|+|+++.|+.+..++. ++|.+....... .+..  
T Consensus       195 -------------------------------------~~~~gia~s~dg~~ly~~~~~~~-~l~~~~~~~~~~~~~~~~~  236 (343)
T 2qe8_A          195 -------------------------------------LGVNGIVLDAENEWLYLSPMHST-SMYRIKSADLSNLQLTDAE  236 (343)
T ss_dssp             -------------------------------------CCEEEEEECTTSCEEEEEESSCS-EEEEEEHHHHTCTTCCHHH
T ss_pred             -------------------------------------cccceeEeccCCCEEEEEeCCCC-eEEEEEHHHhcCCCCChhh
Confidence                                                 12567999999998888877663 444432110000 0000  


Q ss_pred             ccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeeecc-cCC
Q psy12697        445 HNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSF-HSA  523 (602)
Q Consensus       445 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~  523 (602)
                      ....+.                         ..++......++++++|+++++...++.|.+||..+++....... +..
T Consensus       237 ~~~~~~-------------------------~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~~~~  291 (343)
T 2qe8_A          237 LGSKIE-------------------------RYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDEKLS  291 (343)
T ss_dssp             HHTTCE-------------------------EEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECGGGS
T ss_pred             hhcceE-------------------------ecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEECCcee
Confidence            000000                         001223445688999999999988899999999856764333322 234


Q ss_pred             CeeEeeecCCc-eEEEeeCCCcEEEee
Q psy12697        524 PALDVDWQSNT-SFASCSTDQHIHVCK  549 (602)
Q Consensus       524 ~v~~~~~s~~~-~l~~~~~d~~i~iw~  549 (602)
                      ...+++|.+++ .+++.+..+.+.+|.
T Consensus       292 ~p~~va~~~~g~l~v~~~~~~~~~~f~  318 (343)
T 2qe8_A          292 WTDSFNFGSDGYLYFDCNQLHHSAPLN  318 (343)
T ss_dssp             CEEEEEECTTSCEEEEECCGGGSGGGB
T ss_pred             cCCeeEECCCCcEEEEeCccccccccc
Confidence            58899999999 666665555554444

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=99.28  E-value=5.2e-07  Score=96.34  Aligned_cols=404  Identities=9%  Similarity=-0.011  Sum_probs=237.6

Q ss_pred             CceEEEEECCCCCeEEEeeCCceEEEEecCCceeEEEeeccCceEEEEeCCCCCCCCCCCCccccccccccCCcceEeeC
Q psy12697        141 EPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKGTGGIFEVCWNSRGTPPNPPESMEVDASIEIPQSKATKLIG  220 (602)
Q Consensus       141 ~~V~~~~~s~d~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  220 (602)
                      ..|.++...++|+.|-.++.++-+..||..+++...-....          ..                 .    .  .-
T Consensus        66 n~I~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~f~~~~~~~----------~~-----------------~----~--~l  112 (781)
T 3v9f_A           66 NELNEVYTDPVQPVIWIATQRAGLNAYNYETQSFSVYQYNP----------ED-----------------P----Q--SL  112 (781)
T ss_dssp             SCEEEEEECSSSSEEEEEESSSCEEEEETTTTEEEEECCCT----------TC-----------------S----S--SC
T ss_pred             cccceEEEcCCCCEEEEEeCCCCcceECCCCCeEEeecccc----------CC-----------------C----C--Cc
Confidence            45899999988884555667756999998876643210000          00                 0    0  00


Q ss_pred             CCcceEEEEEcC--CCCEEEEeeCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEeeCCCCCeEEEE
Q psy12697        221 HESEVFICAWNP--VKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFLATG  298 (602)
Q Consensus       221 h~~~v~~~~~~~--~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~  298 (602)
                      ....|.++....  ++. |..++.++.+..++..++...          ...... ........|.++...+++.+. +|
T Consensus       113 ~~~~i~~i~~d~~~~g~-lwi~t~~~gl~~~~~~~~~~~----------~~~~~~-~~~l~~~~i~~i~~d~~g~lw-ig  179 (781)
T 3v9f_A          113 ITNDVTHITSSVQAGKG-LWVCTYYRGIEYLDIATGKFT----------HYNKST-VPALPSEQTWTATEAEDGKLY-IG  179 (781)
T ss_dssp             SCSCEEEEEECSSTTSE-EEEEESSSCEEEEETTTTEEE----------EESTTT-CTTCSCCCEEEEEEEETTEEE-EE
T ss_pred             ccCcceEEEecCccCCC-EEEEECCCCeeEEECCCCeEE----------eeccCc-ccCCCccceEEEEECCCCCEE-EE
Confidence            123577887776  554 555664455788887544210          000000 000112457888877777544 46


Q ss_pred             eCCCeEEEEcCCCcceeeccc--------ccCCeEEEEEccCCCEEEEEecCCcEEEEeCCCCceeEEee-------ecc
Q psy12697        299 SYDGYARIWTSDGSLKSTLGQ--------HKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFS-------FHS  363 (602)
Q Consensus       299 ~~dg~i~i~~~~~~~~~~~~~--------~~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~-------~~~  363 (602)
                      +.++-+..|+........+..        ....|.++...+++...+ ++.+ -+.+||..+++......       ...
T Consensus       180 t~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lwi-gt~~-Gl~~~d~~~~~~~~~~~~~~~~~~l~~  257 (781)
T 3v9f_A          180 HVEGGLSILSLNDKSVKHFVHDPQNPNSLPGNDVRCIYKDTNGNIWI-GTSK-GLALFNANTETFTNFHNNPGNIHGALS  257 (781)
T ss_dssp             ETTTEEEEEETTTTEEEEECC--------CCSSEEEEEECTTCCEEE-EETT-EEEEEETTTTEEEC-----------CC
T ss_pred             ecCCCeEEEcCCCCceEeeecCCCCcccCCCCceeEEEEcCCCCEEE-EeCC-cHheECCCCCcEEEEEcCCCccccccC
Confidence            666558888876543333211        135688998888887555 4444 68999987765432211       234


Q ss_pred             CCeeeeeccCCCeEEEeeCCCeEEEEEcCCCceeeEec--------------cCCCCeEEEEECCCCCEEEEEECCCeEE
Q psy12697        364 APALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFE--------------GHTNEVNAIKWDPQGLLLASCSDDMTLK  429 (602)
Q Consensus       364 ~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~--------------~~~~~i~~~~~~~~~~~l~~~~~dg~i~  429 (602)
                      ..+.++...+++.+.+|+..+-|.++|..+.+......              .....|.++..+++|. |..|+.++-|.
T Consensus       258 ~~i~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~-lWigt~~~Gl~  336 (781)
T 3v9f_A          258 SYIFSIKQLKDNKLWIATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNN-IWIGTWGGGIN  336 (781)
T ss_dssp             CCEEEEEECTTSEEEEEESSSCEEEEETTCC---------CEEECBCSSTTSBSSSCEEEEEECSSCC-EEEEEBSSCEE
T ss_pred             ceEEEEEECCCCCEEEEeCCCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCC-EEEEecCCeEE
Confidence            56888888888999999987788899987654321111              1345799999999886 55666666688


Q ss_pred             EEeCCCCeeeEee---------ccccccEEEEEECCCCCCCCCCCcceeeeeee----------ccCCccCCeEEEEEcc
Q psy12697        430 IWSLDKDNCVHDL---------QAHNKEIYTIKWSPTGPETSNPNMSLIFILKS----------TLGQHKGPIFALKWNK  490 (602)
Q Consensus       430 iwd~~~~~~~~~~---------~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~v~~i~~s~  490 (602)
                      .++..+.......         ......|.++...+++..........+..+..          ........|.++...+
T Consensus       337 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~  416 (781)
T 3v9f_A          337 FISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGKLWIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDS  416 (781)
T ss_dssp             EECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTSCEEEEEBSSCEEEEETTEEEEECC-----CCCSBEEEEEECT
T ss_pred             EeCCCCCcceeeccCccccccCCCCCcceEEEEEcCCCCEEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECC
Confidence            8887754332211         11235688888877665332221111111110          0122346788999888


Q ss_pred             CCCEEEEEeCCCeEEEEeCCCCceeeeec--ccCCCeeEeeecCCceEEEeeCCCcEEEeecCCCCceeeeecccccceE
Q psy12697        491 RGNYILSAGVDKTTIIWDAASGQCEQQFS--FHSAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEGHTTGQLV  568 (602)
Q Consensus       491 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~--~~~~~v~~~~~s~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~  568 (602)
                      +|++.+ |..++-|..+|..+++......  .....|.++...+++.|..|+. +.+..|+..+++......... ..  
T Consensus       417 ~g~lWi-gt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lwigt~-~Gl~~~~~~~~~~~~~~~~~~-~~--  491 (781)
T 3v9f_A          417 EGNLWF-GTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDKNKKIWIGTH-AGVFVIDLASKKVIHHYDTSN-SQ--  491 (781)
T ss_dssp             TSCEEE-EETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECTTSEEEEEET-TEEEEEESSSSSCCEEECTTT-SS--
T ss_pred             CCCEEE-EeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECCCCCEEEEEC-CceEEEeCCCCeEEecccCcc-cc--
Confidence            887655 5666679999988775433221  2345789999988885555555 568889977654332211110 00  


Q ss_pred             EEEecCCcEEEEEECCCCCeEEEeccCCeEEee
Q psy12697        569 HSYKGTGGIFEVCWNSRGDKVGASASDGSVFKN  601 (602)
Q Consensus       569 ~~~~~~~~i~~l~~spdg~~l~~~~~dg~v~i~  601 (602)
                         .....|.++..+++|++.+.+..+|..+++
T Consensus       492 ---~~~~~i~~i~~d~~g~lWigt~~~Gl~~~~  521 (781)
T 3v9f_A          492 ---LLENFVRSIAQDSEGRFWIGTFGGGVGIYT  521 (781)
T ss_dssp             ---CSCSCEEEEEECTTCCEEEEESSSCEEEEC
T ss_pred             ---cccceeEEEEEcCCCCEEEEEcCCCEEEEe
Confidence               012568899999999877655556766553

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=99.24  E-value=7.9e-10  Score=114.89  Aligned_cols=270  Identities=11%  Similarity=0.041  Sum_probs=170.1

Q ss_pred             CCeEEEEeCCCeEEEEcCC-CcceeecccccC-----------CeEEEEEccCCCEEEEEecCCcEEEEeCCCCceeEEe
Q psy12697        292 GSFLATGSYDGYARIWTSD-GSLKSTLGQHKG-----------PIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQF  359 (602)
Q Consensus       292 ~~~l~~~~~dg~i~i~~~~-~~~~~~~~~~~~-----------~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~  359 (602)
                      +..+++++.++.|..+|.. |+.+-.......           ....+.+  ++..+++++.|+.+..+|..+|+.+..+
T Consensus        77 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~--~~~~v~v~~~dg~l~alD~~tG~~~W~~  154 (677)
T 1kb0_A           77 DGIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVAL--WKGKVYVGAWDGRLIALDAATGKEVWHQ  154 (677)
T ss_dssp             TTEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred             CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceE--ECCEEEEEcCCCEEEEEECCCCCEEeee
Confidence            4456666777788888864 554443332211           0112222  3567888899999999999999999887


Q ss_pred             eec-c----CCeeeeeccCCCeEEEeeC------CCeEEEEEcCCCceeeEeccCCC-----------------------
Q psy12697        360 SFH-S----APALDVDWQSNTSFASCST------DQHIHVCKLHSDKPVKSFEGHTN-----------------------  405 (602)
Q Consensus       360 ~~~-~----~~~~~~~~~~~~~~~~~~~------~~~i~i~d~~~~~~~~~~~~~~~-----------------------  405 (602)
                      ... .    ..+...-...++.+++++.      ++.|+.+|..+++.+..+.....                       
T Consensus       155 ~~~~~~~~~~~~~~~p~v~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~  234 (677)
T 1kb0_A          155 NTFEGQKGSLTITGAPRVFKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGK  234 (677)
T ss_dssp             ETTTTCCSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGC
T ss_pred             cCCcCcCcCcccccCcEEECCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCccccccccccccccccccccCc
Confidence            754 2    1111111112566666654      68999999999998876653221                       


Q ss_pred             ---------CeEEEEECCCCCEEEEEECCC-------------------eEEEEeCCCCeeeEeeccccccEEEEEECCC
Q psy12697        406 ---------EVNAIKWDPQGLLLASCSDDM-------------------TLKIWSLDKDNCVHDLQAHNKEIYTIKWSPT  457 (602)
Q Consensus       406 ---------~i~~~~~~~~~~~l~~~~~dg-------------------~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~  457 (602)
                               ....++++|++..++.++.++                   .|..+|.++++.+..++.......    .  
T Consensus       235 ~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~w----d--  308 (677)
T 1kb0_A          235 WWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNW----D--  308 (677)
T ss_dssp             HHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCS----C--
T ss_pred             eeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCccc----c--
Confidence                     113578899999999887764                   488999999888777653211100    0  


Q ss_pred             CCCCCCCCcceeeeeeeccCCccCCeEEEEEccCC---CEEEEEeCCCeEEEEeCCCCceeeeecccC-----------C
Q psy12697        458 GPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRG---NYILSAGVDKTTIIWDAASGQCEQQFSFHS-----------A  523 (602)
Q Consensus       458 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~---~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-----------~  523 (602)
                                        .. ......-+....+|   +.++.++.+|.++++|..+|+.+..+....           .
T Consensus       309 ------------------~~-~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~  369 (677)
T 1kb0_A          309 ------------------YT-STQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGK  369 (677)
T ss_dssp             ------------------CC-CCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSC
T ss_pred             ------------------cc-cCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCc
Confidence                              00 01111222333467   678999999999999999999886654211           0


Q ss_pred             Ce------------------------eEeeecCCc-eEEEeeC-------------------------------------
Q psy12697        524 PA------------------------LDVDWQSNT-SFASCST-------------------------------------  541 (602)
Q Consensus       524 ~v------------------------~~~~~s~~~-~l~~~~~-------------------------------------  541 (602)
                      ++                        ..++++|++ .+++...                                     
T Consensus       370 ~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~  449 (677)
T 1kb0_A          370 PIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAE  449 (677)
T ss_dssp             EEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSS
T ss_pred             eeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccc
Confidence            11                        146788887 6655432                                     


Q ss_pred             ------CCcEEEeecCCCCceeeeecccccceEEEEecCCcEEEEEECCCCCeEEEeccCCeEEe
Q psy12697        542 ------DQHIHVCKLHSDKPVKSFEGHTTGQLVHSYKGTGGIFEVCWNSRGDKVGASASDGSVFK  600 (602)
Q Consensus       542 ------d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~v~i  600 (602)
                            .|.|..||+.+++.+...+.            ..++....++.++.++++++.||.+++
T Consensus       450 ~~~~~~~g~l~A~D~~tG~~~W~~~~------------~~~~~~g~~~~~g~~v~~g~~dg~l~a  502 (677)
T 1kb0_A          450 PPKSKPFGRLLAWDPVAQKAAWSVEH------------VSPWNGGTLTTAGNVVFQGTADGRLVA  502 (677)
T ss_dssp             CCCSCCEEEEEEEETTTTEEEEEEEE------------SSSCCCCEEEETTTEEEEECTTSEEEE
T ss_pred             cCCCCCccEEEEEeCCCCcEEeecCC------------CCCCcCcceEeCCCEEEEECCCCcEEE
Confidence                  26788888877776655542            223333445567778888888887764

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=99.21  E-value=5.5e-09  Score=99.09  Aligned_cols=231  Identities=12%  Similarity=0.102  Sum_probs=144.0

Q ss_pred             cCCCEEEEE-ecCCcEEEEeCCCC----ceeEEee---e----ccCCeeeeeccCCCeEEEeeCC------CeEEEEEcC
Q psy12697        331 KRGNYILSA-GVDKTTIIWDAASG----QCEQQFS---F----HSAPALDVDWQSNTSFASCSTD------QHIHVCKLH  392 (602)
Q Consensus       331 ~~~~~l~~~-~~dg~i~~wd~~~~----~~~~~~~---~----~~~~~~~~~~~~~~~~~~~~~~------~~i~i~d~~  392 (602)
                      +++++|+.. ..+++|.++|+.+.    +..+.+.   .    .......+...|++.++++..+      +.+.++|..
T Consensus        93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdGi~Vs~~g~~~g~~~g~v~vlD~~  172 (462)
T 2ece_A           93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDAIYISALGNEEGEGPGGILMLDHY  172 (462)
T ss_dssp             CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSCEEEEEEEETTSCSCCEEEEECTT
T ss_pred             ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCeEEEEcCCCcCCCCCCeEEEEECC
Confidence            677777654 45788999999755    4555552   1    1123445567788866655555      789999999


Q ss_pred             CCceeeEeccCCC---CeEEEEECCCCCEEEEEE-------------------CCCeEEEEeCCCCeeeEeeccccccEE
Q psy12697        393 SDKPVKSFEGHTN---EVNAIKWDPQGLLLASCS-------------------DDMTLKIWSLDKDNCVHDLQAHNKEIY  450 (602)
Q Consensus       393 ~~~~~~~~~~~~~---~i~~~~~~~~~~~l~~~~-------------------~dg~i~iwd~~~~~~~~~~~~~~~~i~  450 (602)
                      +.+.+.++.....   .-..+.|+|+++.+++..                   ...+|.+||+.+++.+.++.....   
T Consensus       173 T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~---  249 (462)
T 2ece_A          173 SFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEE---  249 (462)
T ss_dssp             TCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTT---
T ss_pred             CCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCC---
Confidence            9999888863322   234578899999888884                   368999999998877776654210   


Q ss_pred             EEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEE--EEccCCCEEEEEe------CCCeEEEEeCCCCcee--eee--
Q psy12697        451 TIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFAL--KWNKRGNYILSAG------VDKTTIIWDAASGQCE--QQF--  518 (602)
Q Consensus       451 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i--~~s~~~~~l~s~~------~dg~i~iwd~~~~~~~--~~~--  518 (602)
                                                   ......+  +|+|+++++..+.      .+++|.+|....++..  +.+  
T Consensus       250 -----------------------------g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi  300 (462)
T 2ece_A          250 -----------------------------NRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEI  300 (462)
T ss_dssp             -----------------------------EEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEE
T ss_pred             -----------------------------CCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeC
Confidence                                         0112233  3477888877766      4668877665544211  111  


Q ss_pred             cc----------------cCCCeeEeeecCCc-eE-EEeeCCCcEEEeecCCCCceeeeecccccceE---EE---EecC
Q psy12697        519 SF----------------HSAPALDVDWQSNT-SF-ASCSTDQHIHVCKLHSDKPVKSFEGHTTGQLV---HS---YKGT  574 (602)
Q Consensus       519 ~~----------------~~~~v~~~~~s~~~-~l-~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~---~~---~~~~  574 (602)
                      ..                -......+.+|||| +| ++.-..+.|.+||+..............|..+   ..   .+..
T Consensus       301 ~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~  380 (462)
T 2ece_A          301 PAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLT  380 (462)
T ss_dssp             CCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCC
T ss_pred             CCccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCC
Confidence            10                02347789999999 44 45555789999998643211111111111000   00   0001


Q ss_pred             CcEEEEEECCCCCeEEEec
Q psy12697        575 GGIFEVCWNSRGDKVGASA  593 (602)
Q Consensus       575 ~~i~~l~~spdg~~l~~~~  593 (602)
                      +....+++||||++|+++.
T Consensus       381 ggPr~~~lSpDGk~LyVaN  399 (462)
T 2ece_A          381 GAPQMLEISRDGRRVYVTN  399 (462)
T ss_dssp             SCCCCEEECTTSSEEEEEC
T ss_pred             CCCCEEEEcCCCCEEEEEc
Confidence            2357899999999999988

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=99.09  E-value=2.6e-08  Score=88.83  Aligned_cols=199  Identities=10%  Similarity=0.063  Sum_probs=141.7

Q ss_pred             CeEEEEEccCCCEEEEEec--CCcEEEEeCCCCceeEEeeeccC-CeeeeeccCCCeEEEeeCCCeEEEEEcCCCceeeE
Q psy12697        323 PIFALKWNKRGNYILSAGV--DKTTIIWDAASGQCEQQFSFHSA-PALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKS  399 (602)
Q Consensus       323 ~i~~~~~~~~~~~l~~~~~--dg~i~~wd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~  399 (602)
                      ....+.|++++...++.+.  ++.|.++|+.+++.+..+..... ....+++..+..+++.-.++.+.++|..+.+.+.+
T Consensus        22 f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g~~lyv~t~~~~~v~viD~~t~~v~~~  101 (266)
T 2iwa_A           22 FTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLLNEKLYQVVWLKNIGFIYDRRTLSNIKN  101 (266)
T ss_dssp             CEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEETTCSEEEEEETTTTEEEEE
T ss_pred             CcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEeCCEEEEEEecCCEEEEEECCCCcEEEE
Confidence            3578999998754444443  57999999999999988765443 22345666555566666789999999999998888


Q ss_pred             eccCCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeeeEeeccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCc
Q psy12697        400 FEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQH  479 (602)
Q Consensus       400 ~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  479 (602)
                      +......  ...+++||+.|+++..++.|.++|..+.+.+..+......                             ..
T Consensus       102 i~~g~~~--g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~-----------------------------~p  150 (266)
T 2iwa_A          102 FTHQMKD--GWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNG-----------------------------HR  150 (266)
T ss_dssp             EECCSSS--CCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETT-----------------------------EE
T ss_pred             EECCCCC--eEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCC-----------------------------cc
Confidence            8633111  2345567887877777899999999988877766432110                             01


Q ss_pred             cCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeeecccC-------------CCeeEeeecCCc--eEEEeeCCCc
Q psy12697        480 KGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHS-------------APALDVDWQSNT--SFASCSTDQH  544 (602)
Q Consensus       480 ~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-------------~~v~~~~~s~~~--~l~~~~~d~~  544 (602)
                      -..++.+.|. +|+..+....++.|.+.|..+++.+..+....             .....++|+|++  .++++...+.
T Consensus       151 ~~~~nele~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~  229 (266)
T 2iwa_A          151 VIRLNELEYI-NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPK  229 (266)
T ss_dssp             CCCEEEEEEE-TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSE
T ss_pred             cccceeEEEE-CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCe
Confidence            1234556666 66666666668899999999999988876421             246899999998  6667778899


Q ss_pred             EEEeecCCC
Q psy12697        545 IHVCKLHSD  553 (602)
Q Consensus       545 i~iw~~~~~  553 (602)
                      +++.++...
T Consensus       230 v~~i~l~~~  238 (266)
T 2iwa_A          230 LFEIKLHLV  238 (266)
T ss_dssp             EEEEEEEEC
T ss_pred             EEEEEEecc
Confidence            999987654

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=99.08  E-value=6.1e-08  Score=100.68  Aligned_cols=307  Identities=10%  Similarity=0.048  Sum_probs=178.2

Q ss_pred             CCeEEEeeCCceEEEEecCCceeEEEeeccCceEEEEeCCCCCCCCCCCCccccccccccCCcceEeeCCCcce-EEEEE
Q psy12697        152 GKFLASGSFDKCVHIWSARTGQLVHSYKGTGGIFEVCWNSRGTPPNPPESMEVDASIEIPQSKATKLIGHESEV-FICAW  230 (602)
Q Consensus       152 ~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~v-~~~~~  230 (602)
                      +..|+.++.++.|.-+|..+|+.+-++........                    ....          -...+ ..+++
T Consensus        66 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~--------------------~~~~----------~~~~~~~~~~~  115 (668)
T 1kv9_A           66 DGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVK--------------------ARTS----------CCDAVNRGVAL  115 (668)
T ss_dssp             TTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGG--------------------GGGC----------TTCSCCCCCEE
T ss_pred             CCEEEEECCCCeEEEEECCCChhceEECCCCCccc--------------------cccc----------cccCCccceEE
Confidence            56677778899999999999999877653211000                    0000          00000 00111


Q ss_pred             cCCCCEEEEeeCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEeeCC--CCCeEEEEeC------CC
Q psy12697        231 NPVKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNN--NGSFLATGSY------DG  302 (602)
Q Consensus       231 ~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~l~~~~~------dg  302 (602)
                        .+..++.++.|+.|..+|..+++........        ..       .....+.-+|  .+..++++..      +|
T Consensus       116 --~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~--------~~-------~~~~~~~~~P~v~~~~v~vg~~~~~~~~~g  178 (668)
T 1kv9_A          116 --WGDKVYVGTLDGRLIALDAKTGKAIWSQQTT--------DP-------AKPYSITGAPRVVKGKVIIGNGGAEYGVRG  178 (668)
T ss_dssp             --EBTEEEEECTTSEEEEEETTTCCEEEEEECS--------CT-------TSSCBCCSCCEEETTEEEECCBCTTTCCBC
T ss_pred             --ECCEEEEEcCCCEEEEEECCCCCEeeeeccC--------CC-------CCcceecCCCEEECCEEEEeCCCCCcCCCC
Confidence              2457788888999999999888754322110        00       0000011111  1334555543      58


Q ss_pred             eEEEEcCC-Ccceeecccc-------------------------------cCCeEEEEEccCCCEEEEEecCC-------
Q psy12697        303 YARIWTSD-GSLKSTLGQH-------------------------------KGPIFALKWNKRGNYILSAGVDK-------  343 (602)
Q Consensus       303 ~i~i~~~~-~~~~~~~~~~-------------------------------~~~i~~~~~~~~~~~l~~~~~dg-------  343 (602)
                      .|..+|.. |+.+-.+...                               ......+++.|+...++.++.++       
T Consensus       179 ~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~  258 (668)
T 1kv9_A          179 FVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREV  258 (668)
T ss_dssp             EEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHH
T ss_pred             EEEEEECCCCcEEEEecccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCC
Confidence            89999975 5555443210                               00112467888888888887665       


Q ss_pred             ------------cEEEEeCCCCceeEEeeeccC---------CeeeeeccCCC----eEEEeeCCCeEEEEEcCCCceee
Q psy12697        344 ------------TTIIWDAASGQCEQQFSFHSA---------PALDVDWQSNT----SFASCSTDQHIHVCKLHSDKPVK  398 (602)
Q Consensus       344 ------------~i~~wd~~~~~~~~~~~~~~~---------~~~~~~~~~~~----~~~~~~~~~~i~i~d~~~~~~~~  398 (602)
                                  .|..+|..+|+.+..++....         +........++    .++.++.+|.++++|..+++.+.
T Consensus       259 ~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~  338 (668)
T 1kv9_A          259 RSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLIS  338 (668)
T ss_dssp             HSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEE
T ss_pred             CCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEec
Confidence                        399999999999988775321         11111111233    48888999999999999999874


Q ss_pred             EeccCCC------------C------------------------eEEEEECCCCCEEEEEE-------------------
Q psy12697        399 SFEGHTN------------E------------------------VNAIKWDPQGLLLASCS-------------------  423 (602)
Q Consensus       399 ~~~~~~~------------~------------------------i~~~~~~~~~~~l~~~~-------------------  423 (602)
                      .......            +                        -..++++|+..+++...                   
T Consensus       339 ~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~  418 (668)
T 1kv9_A          339 AEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKA  418 (668)
T ss_dssp             EEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSS
T ss_pred             cccccccccccccccccCCccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccc
Confidence            3321110            0                        01257777766665532                   


Q ss_pred             -----------------CCCeEEEEeCCCCeeeEeeccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEE
Q psy12697        424 -----------------DDMTLKIWSLDKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFAL  486 (602)
Q Consensus       424 -----------------~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i  486 (602)
                                       .+|.|..||+.+++.+.+.....                                   +....
T Consensus       419 ~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~~~-----------------------------------~~~~~  463 (668)
T 1kv9_A          419 FNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYPT-----------------------------------HWNGG  463 (668)
T ss_dssp             CCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEESS-----------------------------------SCCCC
T ss_pred             cccCccccccCCCCCCCccceEEEEeCCCCcEEEEccCCC-----------------------------------CCcCc
Confidence                             22566666766666655443211                                   11112


Q ss_pred             EEccCCCEEEEEeCCCeEEEEeCCCCceeeeecccCCCe-eEeeecCCc--eEEEee
Q psy12697        487 KWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPA-LDVDWQSNT--SFASCS  540 (602)
Q Consensus       487 ~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v-~~~~~s~~~--~l~~~~  540 (602)
                      .+...+.+++.++.||.++.||.++|+.+..+....... .-+.+..+|  +++.+.
T Consensus       464 ~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~~~~~~~~~~~~p~~~~~~G~~yva~~~  520 (668)
T 1kv9_A          464 TLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAGRQYVAIMA  520 (668)
T ss_dssp             EEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEE
T ss_pred             eeEeCCCEEEEECCcccchhhhhhcChhheEecCCCCcccCceEEEECCEEEEEEEe
Confidence            233467788899999999999999999998887543211 223344566  444443

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=99.06  E-value=1.9e-07  Score=88.67  Aligned_cols=239  Identities=10%  Similarity=0.062  Sum_probs=149.4

Q ss_pred             eeC--CCCCeEEE-EeCCCeEEEEcCCC-----cceeecc------c-ccCCeEEEEEccCCCEEEEEecC------CcE
Q psy12697        287 DWN--NNGSFLAT-GSYDGYARIWTSDG-----SLKSTLG------Q-HKGPIFALKWNKRGNYILSAGVD------KTT  345 (602)
Q Consensus       287 ~~~--~~~~~l~~-~~~dg~i~i~~~~~-----~~~~~~~------~-~~~~i~~~~~~~~~~~l~~~~~d------g~i  345 (602)
                      .++  +++++|++ +..++.|.++|...     +...++.      . ....-..+..+|+| .++++..+      |.+
T Consensus        88 ~~~~~~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v  166 (462)
T 2ece_A           88 NGKPNIERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGI  166 (462)
T ss_dssp             TCCTTCCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEE
T ss_pred             ccCCCccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeE
Confidence            446  77777665 55568899999752     2333331      0 11244567788999 66666555      789


Q ss_pred             EEEeCCCCceeEEeeeccCC---eeeeeccCCCeEEEeeC--------------------CCeEEEEEcCCCceeeEecc
Q psy12697        346 IIWDAASGQCEQQFSFHSAP---ALDVDWQSNTSFASCST--------------------DQHIHVCKLHSDKPVKSFEG  402 (602)
Q Consensus       346 ~~wd~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~--------------------~~~i~i~d~~~~~~~~~~~~  402 (602)
                      .++|..+++.+..+.....+   ...+-|+|+...+..++                    ...|.+||+.+++.+.++..
T Consensus       167 ~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~v  246 (462)
T 2ece_A          167 LMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTL  246 (462)
T ss_dssp             EEECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEES
T ss_pred             EEEECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEec
Confidence            99999999999988744332   34567788866555553                    78999999999888777765


Q ss_pred             CC--CCeEEEEE--CCCCCEEEEEE------CCCeEEEEeCCCCeeeEeeccccccEEEEEECCCCCCCCCCCcceeeee
Q psy12697        403 HT--NEVNAIKW--DPQGLLLASCS------DDMTLKIWSLDKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFIL  472 (602)
Q Consensus       403 ~~--~~i~~~~~--~~~~~~l~~~~------~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~  472 (602)
                      ..  .....+.|  +|+++++.+++      .+++|.+|..+.++. ...       ..+...+... ..     .+...
T Consensus       247 g~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~-~~~-------~vIdi~~~~v-~~-----~lp~~  312 (462)
T 2ece_A          247 GEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKW-NAE-------KVIEIPAEPL-EG-----NLPEI  312 (462)
T ss_dssp             CTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEE-EEE-------EEEEECCEEC-CS-----SCCGG
T ss_pred             CCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCce-eEE-------EEEeCCCccc-cc-----ccccc
Confidence            31  23455656  99999988877      456888887754321 111       1111111000 00     00000


Q ss_pred             eeccCCccCCeEEEEEccCCCEEEEEeC-CCeEEEEeCCC---CceeeeecccC--------------CCeeEeeecCCc
Q psy12697        473 KSTLGQHKGPIFALKWNKRGNYILSAGV-DKTTIIWDAAS---GQCEQQFSFHS--------------APALDVDWQSNT  534 (602)
Q Consensus       473 ~~~~~~~~~~v~~i~~s~~~~~l~s~~~-dg~i~iwd~~~---~~~~~~~~~~~--------------~~v~~~~~s~~~  534 (602)
                      ...+.+-......|.+|+||++|.++.. .+.|.+||+..   .+.+..+....              +.-..++++|||
T Consensus       313 ~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDG  392 (462)
T 2ece_A          313 LKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDG  392 (462)
T ss_dssp             GGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTS
T ss_pred             ccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCC
Confidence            0000111245778999999999987765 68999999863   34444443221              125789999999


Q ss_pred             -eEEEee
Q psy12697        535 -SFASCS  540 (602)
Q Consensus       535 -~l~~~~  540 (602)
                       +|+++.
T Consensus       393 k~LyVaN  399 (462)
T 2ece_A          393 RRVYVTN  399 (462)
T ss_dssp             SEEEEEC
T ss_pred             CEEEEEc
Confidence             777666

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=99.04  E-value=8.5e-07  Score=80.99  Aligned_cols=218  Identities=11%  Similarity=0.009  Sum_probs=136.6

Q ss_pred             CceeEEeeCCCCCeEEEE-eCCCeEEEEcCCCcceeecc-cccCCeEEEEEccCCCEEEEE-ecCCcEEEEeCCCCceeE
Q psy12697        281 KDVTSLDWNNNGSFLATG-SYDGYARIWTSDGSLKSTLG-QHKGPIFALKWNKRGNYILSA-GVDKTTIIWDAASGQCEQ  357 (602)
Q Consensus       281 ~~i~~~~~~~~~~~l~~~-~~dg~i~i~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~-~~dg~i~~wd~~~~~~~~  357 (602)
                      ..+..++|++++..|+.+ ..++.|..++.++.....+. ........+++++++..|+.+ ...+.|.+++........
T Consensus        36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~  115 (267)
T 1npe_A           36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRV  115 (267)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred             CcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEE
Confidence            346899999976555554 45689999998876543332 223567899999976666554 456789999986543322


Q ss_pred             EeeeccCCeeeeeccC-CCeEEEeeC---CCeEEEEEcCCCceeeEeccCCCCeEEEEECCCCCEEEEEE-CCCeEEEEe
Q psy12697        358 QFSFHSAPALDVDWQS-NTSFASCST---DQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCS-DDMTLKIWS  432 (602)
Q Consensus       358 ~~~~~~~~~~~~~~~~-~~~~~~~~~---~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~iwd  432 (602)
                      ...........+++.+ ++.+..+..   .+.|..+++..................++++|++..|..+. ..+.|.++|
T Consensus       116 ~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~  195 (267)
T 1npe_A          116 LFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLN  195 (267)
T ss_dssp             EECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             EEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCcEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEe
Confidence            2222224567888888 566655554   36888888764332222222335688999999877665554 567899999


Q ss_pred             CCCCeeeEeeccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCC
Q psy12697        433 LDKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASG  512 (602)
Q Consensus       433 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~~~~  512 (602)
                      +........+..                                   ......++.. ++.++++....+.|.++|..++
T Consensus       196 ~~g~~~~~~~~~-----------------------------------~~~P~gi~~d-~~~lyva~~~~~~v~~~d~~~g  239 (267)
T 1npe_A          196 PAQPGRRKVLEG-----------------------------------LQYPFAVTSY-GKNLYYTDWKTNSVIAMDLAIS  239 (267)
T ss_dssp             TTEEEEEEEEEC-----------------------------------CCSEEEEEEE-TTEEEEEETTTTEEEEEETTTT
T ss_pred             cCCCceEEEecC-----------------------------------CCCceEEEEe-CCEEEEEECCCCeEEEEeCCCC
Confidence            875322211110                                   0111344443 3334444445689999999999


Q ss_pred             ceeeeecccC-CCeeEeeecCCc
Q psy12697        513 QCEQQFSFHS-APALDVDWQSNT  534 (602)
Q Consensus       513 ~~~~~~~~~~-~~v~~~~~s~~~  534 (602)
                      +.+..+.... .....+++.|++
T Consensus       240 ~~~~~i~~g~~~~p~gi~~~~~~  262 (267)
T 1npe_A          240 KEMDTFHPHKQTRLYGITIALSQ  262 (267)
T ss_dssp             EEEEEECCSSCCCCCCEEEECSC
T ss_pred             CceEEEccccccccceeeecCcc
Confidence            9888876433 246778888776

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=99.02  E-value=4.7e-09  Score=103.27  Aligned_cols=330  Identities=11%  Similarity=0.106  Sum_probs=188.1

Q ss_pred             EEEeeCCceEEEEecCCceeEEEeeccCceEEEEeCCCCCCCCCCCCccccccccc-----------cCCcceEeeCCCc
Q psy12697        155 LASGSFDKCVHIWSARTGQLVHSYKGTGGIFEVCWNSRGTPPNPPESMEVDASIEI-----------PQSKATKLIGHES  223 (602)
Q Consensus       155 l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~l~~h~~  223 (602)
                      +.||+..|.|+|+-+.+++.+..+.-        |+++...-..... +....+.-           .........|. .
T Consensus        18 f~s~g~~g~~~v~g~ps~r~~~~i~v--------f~~~~~~g~g~~~-es~~~l~~~~~~~~~~~~~~~g~~~~~~gd-~   87 (595)
T 1fwx_A           18 FWSSGQSGEMRILGIPSMRELMRVPV--------FNRCSATGWGQTN-ESVRIHERTMSERTKKFLAANGKRIHDNGD-L   87 (595)
T ss_dssp             EECCBTTCEEEEEEETTCCEEEEEES--------SSCCTTTCTTTBH-HHHHHHHTTCCHHHHHHHHHTTCSSCCCCC-B
T ss_pred             EeeCCcCceEEEEecCCcceEEEeee--------ecCCCCcccCCch-hHHHHHhccCCccchhhhhccCceecccCC-C
Confidence            56788999999999999999987763        3332211110000 00000000           00000000111 1


Q ss_pred             ceEEEEE---cCCCCEEEEeeC-CCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEee-C-CCCCeEEE
Q psy12697        224 EVFICAW---NPVKDFLASGSG-DSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDW-N-NNGSFLAT  297 (602)
Q Consensus       224 ~v~~~~~---~~~~~~l~s~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~-~~~~~l~~  297 (602)
                      .-..+++   .+||++++.... ++.|.+.|+.+.+.....               ..+.......+++ + |+++++++
T Consensus        88 hh~~~s~t~g~~DG~~lfVnd~~~~rVavIdl~t~~~~~ii---------------~ip~g~~phg~~~~~~p~~~~v~~  152 (595)
T 1fwx_A           88 HHVHMSFTEGKYDGRFLFMNDKANTRVARVRCDVMKCDAIL---------------EIPNAKGIHGLRPQKWPRSNYVFC  152 (595)
T ss_dssp             CCEEEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEE---------------ECSSCCSEEEEEECCSSBCSEEEE
T ss_pred             CccccCCCCCCcCCCEEEEEcCCCCEEEEEECCCceEeeEE---------------eCCCCCCCcceeeeecCCCcEEEE
Confidence            1133444   337887777655 566999999876542211               1222355778887 5 89999888


Q ss_pred             Ee------------------CCCeEEEEcCCCc-ceeecccccCCeEEEEEccCCCEEEEEecCCc--------------
Q psy12697        298 GS------------------YDGYARIWTSDGS-LKSTLGQHKGPIFALKWNKRGNYILSAGVDKT--------------  344 (602)
Q Consensus       298 ~~------------------~dg~i~i~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~--------------  344 (602)
                      ++                  .++.+.++|.+.. ...++.-. +....++++|+|+++++++.+..              
T Consensus       153 ~~~~~~p~~~dg~~l~~~~~~~~~vtvID~~t~~v~~qI~Vg-g~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d  231 (595)
T 1fwx_A          153 NGEDETPLVNDGTNMEDVANYVNVFTAVDADKWEVAWQVLVS-GNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMD  231 (595)
T ss_dssp             EECSCEESSCSSSSTTCGGGEEEEEEEEETTTTEEEEEEEES-SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEE
T ss_pred             ecccccccCCCCcccccccccCceEEEEECCCCeEEEEEEeC-CCccceEECCCCCEEEEEecCcccCcchhhccccccc
Confidence            84                  2457888887743 33333221 24466889999999998886531              


Q ss_pred             -EEEEeCCCCceeEEeeeccCCeeeeeccCCCeEEEeeCCCeEEEEEcCC--Cce-eeEeccCCCCeEEEEECCCCCEEE
Q psy12697        345 -TIIWDAASGQCEQQFSFHSAPALDVDWQSNTSFASCSTDQHIHVCKLHS--DKP-VKSFEGHTNEVNAIKWDPQGLLLA  420 (602)
Q Consensus       345 -i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~--~~~-~~~~~~~~~~i~~~~~~~~~~~l~  420 (602)
                       +.+.|....+               .+.+++.....   +.|.+.|..+  ++. +..+.. .....++.++|||++++
T Consensus       232 ~v~V~~~~~~~---------------~~v~~Gk~~~i---~~V~VID~~~~~~~~~~~~Ipv-g~~PhGv~~sPDGk~v~  292 (595)
T 1fwx_A          232 HIVVFNIAEIE---------------KAIAAGDYQEL---NGVKVVDGRKEASSLFTRYIPI-ANNPHGCNMAPDKKHLC  292 (595)
T ss_dssp             EEEEEEHHHHH---------------HHHHHTCSEEE---TTEEEEECSGGGCCSSEEEEEE-ESSCCCEEECTTSSEEE
T ss_pred             eEEEeecccee---------------EeccCCCeeEE---CcEEEEeCcccCCceeEEEEec-CCCceEEEEcCCCCEEE
Confidence             2233221110               01112211111   5599999998  544 444442 23567899999999887


Q ss_pred             EEE-CCCeEEEEeCCCCeeeE--eeccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEE
Q psy12697        421 SCS-DDMTLKIWSLDKDNCVH--DLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILS  497 (602)
Q Consensus       421 ~~~-~dg~i~iwd~~~~~~~~--~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s  497 (602)
                      +++ .+.+|.++|+.+.+...  .+... ..+..                       .. .-......++|+|+|...++
T Consensus       293 V~~~~s~~VsVid~~~~~~~~~~~l~~~-~~v~~-----------------------~v-~vG~gP~h~aF~~dG~aY~t  347 (595)
T 1fwx_A          293 VAGKLSPTVTVLDVTRFDAVFYENADPR-SAVVA-----------------------EP-ELGLGPLHTAFDGRGNAYTS  347 (595)
T ss_dssp             EECTTSSBEEEEEGGGHHHHHHSCCCGG-GGEEE-----------------------CC-BCCSCEEEEEECTTSEEEEE
T ss_pred             EeCCCCCeEEEEECcccccccccccCcc-cceEE-----------------------Ec-CCCCCcceEEECCCCeEEEE
Confidence            776 46889999998643110  00000 00000                       00 11245678899999954556


Q ss_pred             EeCCCeEEEEeCCC----------CceeeeecccCCCe-----eEeeecCCc-eEEEeeC-C-CcE-----------EEe
Q psy12697        498 AGVDKTTIIWDAAS----------GQCEQQFSFHSAPA-----LDVDWQSNT-SFASCST-D-QHI-----------HVC  548 (602)
Q Consensus       498 ~~~dg~i~iwd~~~----------~~~~~~~~~~~~~v-----~~~~~s~~~-~l~~~~~-d-~~i-----------~iw  548 (602)
                      ...|+.|.+||+.+          .+.+..+..|-.+-     ..+.++||| +|++... . .++           .++
T Consensus       348 ~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk~skdr~~~~gp~~~~~~ql~  427 (595)
T 1fwx_A          348 LFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSKFSKDRFLNVGPLKPENDQLI  427 (595)
T ss_dssp             ETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEESCCTTSSCCCCSSCCEEEEEE
T ss_pred             EecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcCCCCccccccCCCCCCCcceEE
Confidence            67799999999987          45566666554432     344679999 6666543 1 334           888


Q ss_pred             ecCCCC
Q psy12697        549 KLHSDK  554 (602)
Q Consensus       549 ~~~~~~  554 (602)
                      |+..++
T Consensus       428 dis~~~  433 (595)
T 1fwx_A          428 DISGDK  433 (595)
T ss_dssp             ECSSSS
T ss_pred             EcCCCc
Confidence            986555

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=99.01  E-value=4.9e-07  Score=82.56  Aligned_cols=247  Identities=11%  Similarity=0.018  Sum_probs=147.3

Q ss_pred             eEEEEeCCCeEEEEcCCCccee------ecccccCCeEEEEEccCCCEEEEEe-cCCcEEEEeCCCCceeEEeeeccCCe
Q psy12697        294 FLATGSYDGYARIWTSDGSLKS------TLGQHKGPIFALKWNKRGNYILSAG-VDKTTIIWDAASGQCEQQFSFHSAPA  366 (602)
Q Consensus       294 ~l~~~~~dg~i~i~~~~~~~~~------~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~~wd~~~~~~~~~~~~~~~~~  366 (602)
                      +|+.+.. +.|+.+++++....      .+......+..++|++++..|+.+. ..+.|..++.................
T Consensus         3 ~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p   81 (267)
T 1npe_A            3 HLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSP   81 (267)
T ss_dssp             EEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCE
T ss_pred             EEEEEcC-CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCc
Confidence            4444443 47888887765432      1222234567999999776666554 56789999987665433332223456


Q ss_pred             eeeeccCC-CeEE-EeeCCCeEEEEEcCCCceeeEeccCCCCeEEEEECCCCCEEEEEEC---CCeEEEEeCCCCeeeEe
Q psy12697        367 LDVDWQSN-TSFA-SCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSD---DMTLKIWSLDKDNCVHD  441 (602)
Q Consensus       367 ~~~~~~~~-~~~~-~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~~~~~~  441 (602)
                      ..+++.+. +.++ +-...+.|.++++..................++++|++..|..+..   .+.|..++++... ...
T Consensus        82 ~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~-~~~  160 (267)
T 1npe_A           82 EGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTN-RRI  160 (267)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCC-CEE
T ss_pred             cEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCC-cEE
Confidence            77888764 4544 4455688999998754332222222356789999997666655554   3677777765321 111


Q ss_pred             eccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEE-eCCCeEEEEeCCCCceeeeecc
Q psy12697        442 LQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSA-GVDKTTIIWDAASGQCEQQFSF  520 (602)
Q Consensus       442 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~  520 (602)
                      +..                                 ........++++++++.|..+ ...+.|.++|.........+..
T Consensus       161 ~~~---------------------------------~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~  207 (267)
T 1npe_A          161 LAQ---------------------------------DNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEG  207 (267)
T ss_dssp             EEC---------------------------------TTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEEC
T ss_pred             EEE---------------------------------CCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEecC
Confidence            100                                 012345678888887666544 4568899999986544333332


Q ss_pred             cCCCeeEeeecCCc-eEEEeeCCCcEEEeecCCCCceeeeecccccceEEEEecCCcEEEEEECCCCC
Q psy12697        521 HSAPALDVDWQSNT-SFASCSTDQHIHVCKLHSDKPVKSFEGHTTGQLVHSYKGTGGIFEVCWNSRGD  587 (602)
Q Consensus       521 ~~~~v~~~~~s~~~-~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~  587 (602)
                       ......++.. ++ .+++....+.|.++|..+++.+..+....          ......+++.|++.
T Consensus       208 -~~~P~gi~~d-~~~lyva~~~~~~v~~~d~~~g~~~~~i~~g~----------~~~p~gi~~~~~~~  263 (267)
T 1npe_A          208 -LQYPFAVTSY-GKNLYYTDWKTNSVIAMDLAISKEMDTFHPHK----------QTRLYGITIALSQC  263 (267)
T ss_dssp             -CCSEEEEEEE-TTEEEEEETTTTEEEEEETTTTEEEEEECCSS----------CCCCCCEEEECSCC
T ss_pred             -CCCceEEEEe-CCEEEEEECCCCeEEEEeCCCCCceEEEcccc----------ccccceeeecCccC
Confidence             2234566654 34 44555566899999987776665554211          11356677888764

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=98.99  E-value=6.3e-07  Score=91.11  Aligned_cols=267  Identities=11%  Similarity=0.078  Sum_probs=148.1

Q ss_pred             CCeEEEEeCCCeEEEEcCC-Ccceeeccccc--C--CeE-EEEEcc---CCC-EEEEEec------CCcEEEEeCCCCce
Q psy12697        292 GSFLATGSYDGYARIWTSD-GSLKSTLGQHK--G--PIF-ALKWNK---RGN-YILSAGV------DKTTIIWDAASGQC  355 (602)
Q Consensus       292 ~~~l~~~~~dg~i~i~~~~-~~~~~~~~~~~--~--~i~-~~~~~~---~~~-~l~~~~~------dg~i~~wd~~~~~~  355 (602)
                      +..+++++.++.|..+|.. |+.+-......  .  .+. ......   +++ .+++++.      ++.|..+|..+|+.
T Consensus       117 ~~~v~~~t~dg~l~AlD~~TG~~~W~~~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~  196 (582)
T 1flg_A          117 GDKVFFGTLDASVVALNKNTGKVVWKKKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEE  196 (582)
T ss_dssp             TTEEEEEETTTEEEEEESSSCCEEEEEECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCE
T ss_pred             CCEEEEEeCCCEEEEEECCCCCEEeeecCCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCE
Confidence            4578888899999999975 66554432211  0  111 111111   233 5655543      78999999999998


Q ss_pred             eEEeeeccCCe-----------------------------------------eeeeccC-CCeEEEeeC-----------
Q psy12697        356 EQQFSFHSAPA-----------------------------------------LDVDWQS-NTSFASCST-----------  382 (602)
Q Consensus       356 ~~~~~~~~~~~-----------------------------------------~~~~~~~-~~~~~~~~~-----------  382 (602)
                      +.........+                                         ..+++.+ .+.++++..           
T Consensus       197 ~W~~~~~~~~~~p~~~~~~~~~g~~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~  276 (582)
T 1flg_A          197 IWMRPFVEGHMGRLNGKDSTVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWART  276 (582)
T ss_dssp             EEEEESSTTCEEEETTEEEEESSCTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGS
T ss_pred             EeecCCCccccccccCcccccccccccccCCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcccc
Confidence            87654321100                                         0112222 255555542           


Q ss_pred             ---------C----CeEEEEEcCCCceeeEecc--CCC-------CeEEEEEC-CCCC---EEEEEECCCeEEEEeCCCC
Q psy12697        383 ---------D----QHIHVCKLHSDKPVKSFEG--HTN-------EVNAIKWD-PQGL---LLASCSDDMTLKIWSLDKD  436 (602)
Q Consensus       383 ---------~----~~i~i~d~~~~~~~~~~~~--~~~-------~i~~~~~~-~~~~---~l~~~~~dg~i~iwd~~~~  436 (602)
                               |    +.|..+|..+++.+-.++.  |..       ...-+... .+|+   .++.++.+|.++++|..++
T Consensus       277 ~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG  356 (582)
T 1flg_A          277 AKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSNG  356 (582)
T ss_dssp             CTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETTTC
T ss_pred             cCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEECCCceEEEEECCCC
Confidence                     2    5899999999998877653  321       11112222 4674   7888999999999999999


Q ss_pred             eeeEeeccccc--cEEEEE-----------ECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEe----
Q psy12697        437 NCVHDLQAHNK--EIYTIK-----------WSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAG----  499 (602)
Q Consensus       437 ~~~~~~~~~~~--~i~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~----  499 (602)
                      +.+........  ....+.           +.|...............+-....++.  -..++++|+..++++..    
T Consensus       357 ~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~--w~~~a~dp~~g~~yv~~~~~~  434 (582)
T 1flg_A          357 KLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKN--WNPMAYSQDTGLFYVPANHWK  434 (582)
T ss_dssp             CEEEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSC--SSCCEECTTTCCEEEEEECEE
T ss_pred             CEecccccccCccccccccccCCCEeEccccCCccccccccCCCceEECcCCccccC--CCCceECCCCCEEEEechhcc
Confidence            98877654321  112211           111000000000000000000111110  11344555443333321    


Q ss_pred             -----------------------------CCCeEEEEeCCCCceeeeecccCCCeeEeee-cCCceEEEeeCCCcEEEee
Q psy12697        500 -----------------------------VDKTTIIWDAASGQCEQQFSFHSAPALDVDW-QSNTSFASCSTDQHIHVCK  549 (602)
Q Consensus       500 -----------------------------~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~-s~~~~l~~~~~d~~i~iw~  549 (602)
                                                   .+|.|..||+.+++.+....... ++..-.. ..++.++.++.|+.++.||
T Consensus       435 ~~~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~~-~~~~g~~~tagglvf~g~~dg~l~A~D  513 (582)
T 1flg_A          435 EDYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEHL-PLWAGVLATAGNLVFTGTGDGYFKAFD  513 (582)
T ss_dssp             EEEEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEESS-CCCSCCEEETTTEEEEECTTSEEEEEE
T ss_pred             eeeecccccccCCCceeccceeecCCCCCCcceEEEEECCCCCEEEEecCCC-CCcccceEeCCCEEEEECCCCcEEEEE
Confidence                                         36889999999999887665432 2222222 2345888899999999999


Q ss_pred             cCCCCceeeeec
Q psy12697        550 LHSDKPVKSFEG  561 (602)
Q Consensus       550 ~~~~~~~~~~~~  561 (602)
                      .++++.+..++.
T Consensus       514 ~~tG~~lW~~~~  525 (582)
T 1flg_A          514 AKSGKELWKFQT  525 (582)
T ss_dssp             TTTCCEEEEEEC
T ss_pred             CCCCCEEEEecC
Confidence            988888877654

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=98.99  E-value=3.7e-07  Score=92.51  Aligned_cols=316  Identities=8%  Similarity=-0.002  Sum_probs=166.2

Q ss_pred             CCEEEEeeC-CCcEEEEeC-CCCCCCCCccceEEEEEEecCCCcc-cCCCCceeEEeeCCCCCe----EEEEeCCCeEEE
Q psy12697        234 KDFLASGSG-DSTARIWDM-TDSTKKDPKELQIVLRHCISKGGTE-VPSNKDVTSLDWNNNGSF----LATGSYDGYARI  306 (602)
Q Consensus       234 ~~~l~s~~~-dg~i~iw~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~----l~~~~~dg~i~i  306 (602)
                      +..++.++. ++.|.-+|. .+++...........      .... .........+++.|.+..    +++++.|+.+..
T Consensus        62 ~g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~------~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~A  135 (599)
T 1w6s_A           62 DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNP------AARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAA  135 (599)
T ss_dssp             TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCG------GGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEE
T ss_pred             CCEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCc------cccccccccccccceEEEecCCcceeEEEEEcCCCEEEE
Confidence            445556665 677777777 666643222111000      0000 000000122344343444    888889999999


Q ss_pred             EcCC-Ccceeeccccc----CCeEE-EEEccCCCEEEEEe------cCCcEEEEeCCCCceeEEeeeccCCee-------
Q psy12697        307 WTSD-GSLKSTLGQHK----GPIFA-LKWNKRGNYILSAG------VDKTTIIWDAASGQCEQQFSFHSAPAL-------  367 (602)
Q Consensus       307 ~~~~-~~~~~~~~~~~----~~i~~-~~~~~~~~~l~~~~------~dg~i~~wd~~~~~~~~~~~~~~~~~~-------  367 (602)
                      +|.. |+.+-......    ..+.+ ... .++ .+++++      .+|.|..+|..+|+.+..+........       
T Consensus       136 lDa~TG~~~W~~~~~~~~~~~~~~ssP~v-~~g-~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~  213 (599)
T 1w6s_A          136 LNAETGETVWKVENSDIKVGSTLTIAPYV-VKD-KVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDF  213 (599)
T ss_dssp             EETTTCCEEEEEECCCGGGTCBCCSCCEE-ETT-EEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTT
T ss_pred             EECCCCCEEEeecCCCCCccceeecCCEE-ECC-EEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCcccccccccc
Confidence            9964 65554432111    01111 111 133 455554      379999999999999887764322100       


Q ss_pred             -------------------------------eeecc-CCCeEEEeeCC----------------CeEEEEEcCCCceeeE
Q psy12697        368 -------------------------------DVDWQ-SNTSFASCSTD----------------QHIHVCKLHSDKPVKS  399 (602)
Q Consensus       368 -------------------------------~~~~~-~~~~~~~~~~~----------------~~i~i~d~~~~~~~~~  399 (602)
                                                     .+++. ..+.++.+..+                +.|..+|..+++.+-.
T Consensus       214 ~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~  293 (599)
T 1w6s_A          214 NIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFG  293 (599)
T ss_dssp             TTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEE
T ss_pred             ccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeE
Confidence                                           11222 23556666554                3899999999998876


Q ss_pred             eccCCC---------CeEEEEEC-CCC---CEEEEEECCCeEEEEeCCCCeeeEeeccccc--cEEEEEECCCCCCC---
Q psy12697        400 FEGHTN---------EVNAIKWD-PQG---LLLASCSDDMTLKIWSLDKDNCVHDLQAHNK--EIYTIKWSPTGPET---  461 (602)
Q Consensus       400 ~~~~~~---------~i~~~~~~-~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~--~i~~~~~~~~~~~~---  461 (602)
                      ++....         ...-+... .+|   +.++.++.+|.+.++|.++++.+........  ....+.. +.+...   
T Consensus       294 ~q~~~~d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~-~~g~p~~~~  372 (599)
T 1w6s_A          294 YQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSVDL-KTGQPVRDP  372 (599)
T ss_dssp             EESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECT-TTCCEEECG
T ss_pred             eecCCCccccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEEECCCCCEeecccccCCccccccccc-CCCceeecc
Confidence            654221         11112222 567   5678889999999999999998876543210  0111100 000000   


Q ss_pred             ---CCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEE---------------------------------e------
Q psy12697        462 ---SNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSA---------------------------------G------  499 (602)
Q Consensus       462 ---~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~---------------------------------~------  499 (602)
                         ..........+-..+.++.  -..++++|+..++++.                                 +      
T Consensus       373 ~~~~~~~~~~~~~~P~~~Gg~~--w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~  450 (599)
T 1w6s_A          373 EYGTRMDHLAKDICPSAMGYHN--QGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQNYE  450 (599)
T ss_dssp             GGCCCTTCCEEEESSCTTCSSC--SCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSBTTTTB
T ss_pred             ccCCCCCCCccEeccCcccccC--CCCccCCCCCCEEEEeccccceeeecccccccCCcceecccceeccCCcCCcccCC
Confidence               0000000011111111111  1123334333333221                                 1      


Q ss_pred             CCCeEEEEeCCCCceeeeecccCCCeeEeeec-CCceEEEeeCCCcEEEeecCCCCceeeeec
Q psy12697        500 VDKTTIIWDAASGQCEQQFSFHSAPALDVDWQ-SNTSFASCSTDQHIHVCKLHSDKPVKSFEG  561 (602)
Q Consensus       500 ~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s-~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~  561 (602)
                      .+|.|..||+.+++.+..... ..+...-... ..+.++.++.|+.++.||.++++.+..++.
T Consensus       451 ~~G~l~A~D~~tG~~~W~~~~-~~~~~~g~~~tagg~vf~gt~dg~l~A~D~~tG~~lW~~~l  512 (599)
T 1w6s_A          451 GLGQIKAYNAITGDYKWEKME-RFAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFKI  512 (599)
T ss_dssp             CCEEEEEECTTTCCEEEEEEE-SSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred             CcCeEEEEECCCCCEEeEecC-CCCccCcceEecCCEEEEECCCCeEEEEECCCCCEEEEeeC
Confidence            358899999999998876652 2222222222 344777899999999999999888877653

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.97  E-value=1.2e-07  Score=83.22  Aligned_cols=184  Identities=11%  Similarity=0.129  Sum_probs=129.4

Q ss_pred             eEEEEEccCCCEEEEEecCC--cEEEEeCCCCceeEEeeeccCCe-eeeeccCCCeEEEeeCCCeEEEEEcCCCceeeEe
Q psy12697        324 IFALKWNKRGNYILSAGVDK--TTIIWDAASGQCEQQFSFHSAPA-LDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSF  400 (602)
Q Consensus       324 i~~~~~~~~~~~l~~~~~dg--~i~~wd~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~  400 (602)
                      ...+.|+ ++..+.+.+.+|  .|+.+|+.+++.+..+....... ..+....+..+++.-.++.+.++|..+.+.+.++
T Consensus        45 tqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~~~~~ti  123 (262)
T 3nol_A           45 TEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDWKDKIVGLTWKNGLGFVWNIRNLRQVRSF  123 (262)
T ss_dssp             EEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEEEETTTCCEEEEE
T ss_pred             cceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEeCCEEEEEEeeCCEEEEEECccCcEEEEE
Confidence            4788898 666666777766  89999999999999887654432 2355555555666667899999999999999888


Q ss_pred             ccCCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeeeEeeccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCcc
Q psy12697        401 EGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHK  480 (602)
Q Consensus       401 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  480 (602)
                      .....   ...++++++.|+.+..++.|.++|..+.+.+.++......                             ..-
T Consensus       124 ~~~~e---G~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g-----------------------------~~~  171 (262)
T 3nol_A          124 NYDGE---GWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHG-----------------------------EEL  171 (262)
T ss_dssp             ECSSC---CCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETT-----------------------------EEC
T ss_pred             ECCCC---ceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCC-----------------------------ccc
Confidence            75332   2333456777777777888999999998877776532100                             001


Q ss_pred             CCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeeeccc------------CCCeeEeeecCCc-eEEEeeC
Q psy12697        481 GPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFH------------SAPALDVDWQSNT-SFASCST  541 (602)
Q Consensus       481 ~~v~~i~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~------------~~~v~~~~~s~~~-~l~~~~~  541 (602)
                      ..++.+.|. +|+..+..-.+..|.+.|..+++.+..+...            .+-.+.++|+|++ .|++.+.
T Consensus       172 ~~lNELe~~-~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK  244 (262)
T 3nol_A          172 PELNELEWV-DGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK  244 (262)
T ss_dssp             CCEEEEEEE-TTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred             cccceeEEE-CCEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence            223445554 6766666667889999999999998777642            1246889999988 6655553

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=98.97  E-value=1e-07  Score=98.99  Aligned_cols=199  Identities=12%  Similarity=0.080  Sum_probs=125.8

Q ss_pred             CCeEEEEeCCCeEEEEcCC-CcceeecccccC----------Ce-EEEEEccCCCEEEEEecCCcEEEEeCCCCceeEEe
Q psy12697        292 GSFLATGSYDGYARIWTSD-GSLKSTLGQHKG----------PI-FALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQF  359 (602)
Q Consensus       292 ~~~l~~~~~dg~i~i~~~~-~~~~~~~~~~~~----------~i-~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~  359 (602)
                      +..+++++.++.|..+|.. |+.+-.......          .+ ..+.+  .+..++.++.|+.|..+|..+|+.+..+
T Consensus        66 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~~W~~  143 (668)
T 1kv9_A           66 DGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL--WGDKVYVGTLDGRLIALDAKTGKAIWSQ  143 (668)
T ss_dssp             TTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--EBTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred             CCEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEE--ECCEEEEEcCCCEEEEEECCCCCEeeee
Confidence            4467777778888888864 555444432111          00 11222  2457888889999999999999999887


Q ss_pred             eeccCC-eeeeecc---CCCeEEEeeC------CCeEEEEEcCCCceeeEeccCC-------------------------
Q psy12697        360 SFHSAP-ALDVDWQ---SNTSFASCST------DQHIHVCKLHSDKPVKSFEGHT-------------------------  404 (602)
Q Consensus       360 ~~~~~~-~~~~~~~---~~~~~~~~~~------~~~i~i~d~~~~~~~~~~~~~~-------------------------  404 (602)
                      ...... ...+...   .++.++++..      +|.|+.+|..+++.+..+....                         
T Consensus       144 ~~~~~~~~~~~~~~P~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w  223 (668)
T 1kv9_A          144 QTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYW  223 (668)
T ss_dssp             ECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHH
T ss_pred             ccCCCCCcceecCCCEEECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCcccee
Confidence            653211 1111111   2566666654      5899999999999887664210                         


Q ss_pred             ------CCeEEEEECCCCCEEEEEECCCe-------------------EEEEeCCCCeeeEeeccccccEEEEEECCCCC
Q psy12697        405 ------NEVNAIKWDPQGLLLASCSDDMT-------------------LKIWSLDKDNCVHDLQAHNKEIYTIKWSPTGP  459 (602)
Q Consensus       405 ------~~i~~~~~~~~~~~l~~~~~dg~-------------------i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~  459 (602)
                            .....++++|+..+++.++.++.                   |..+|.++++.+..++.........    +  
T Consensus       224 ~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~----~--  297 (668)
T 1kv9_A          224 KLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDF----T--  297 (668)
T ss_dssp             HHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCC----C--
T ss_pred             eeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccc----c--
Confidence                  01124788898889988887764                   8899999998887765421110000    0  


Q ss_pred             CCCCCCcceeeeeeeccCCccCCeEEEEEccCCC---EEEEEeCCCeEEEEeCCCCceeee
Q psy12697        460 ETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGN---YILSAGVDKTTIIWDAASGQCEQQ  517 (602)
Q Consensus       460 ~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~---~l~s~~~dg~i~iwd~~~~~~~~~  517 (602)
                                         ...+.....+..+|+   .++.++.+|.++++|..+|+.+..
T Consensus       298 -------------------~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~  339 (668)
T 1kv9_A          298 -------------------ATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISA  339 (668)
T ss_dssp             -------------------CCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEE
T ss_pred             -------------------CCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEecc
Confidence                               011222222233564   688999999999999999998743

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=98.95  E-value=1.5e-06  Score=88.34  Aligned_cols=264  Identities=9%  Similarity=0.019  Sum_probs=150.7

Q ss_pred             CCeEEEEeCCCeEEEEcCC-Ccceeeccccc--C--CeEE-EEEccCCCEEEEEec------CCcEEEEeCCCCceeEEe
Q psy12697        292 GSFLATGSYDGYARIWTSD-GSLKSTLGQHK--G--PIFA-LKWNKRGNYILSAGV------DKTTIIWDAASGQCEQQF  359 (602)
Q Consensus       292 ~~~l~~~~~dg~i~i~~~~-~~~~~~~~~~~--~--~i~~-~~~~~~~~~l~~~~~------dg~i~~wd~~~~~~~~~~  359 (602)
                      +..+++++.++.+..+|.. |+.+-......  .  .+.+ ...  .+..+++++.      ++.|..+|..+++.+..+
T Consensus       115 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v--~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~  192 (571)
T 2ad6_A          115 AGQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFV--AKDTVLMGCSGAELGVRGAVNAFDLKTGELKWRA  192 (571)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEE--ETTEEEEECBCGGGTCCCEEEEEETTTCCEEEEE
T ss_pred             CCEEEEEeCCCEEEEEECCCCCEEEEecCCCCCccceeccCCEE--ECCEEEEEecCCccCCCCEEEEEECCCCcEEEEE
Confidence            5578888889999999974 65554432111  0  1111 111  1345666654      789999999999998877


Q ss_pred             eeccCCe--------------------------------------eeeeccC-CCeEEEeeCC----------------C
Q psy12697        360 SFHSAPA--------------------------------------LDVDWQS-NTSFASCSTD----------------Q  384 (602)
Q Consensus       360 ~~~~~~~--------------------------------------~~~~~~~-~~~~~~~~~~----------------~  384 (602)
                      .......                                      ..+++.+ .+.++.+..+                +
T Consensus       193 ~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~  272 (571)
T 2ad6_A          193 FATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTM  272 (571)
T ss_dssp             ESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTT
T ss_pred             ccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEE
Confidence            5432110                                      0122333 2455555432                3


Q ss_pred             eEEEEEcCCCceeeEeccC--CC-------CeEEEEECCCCC---EEEEEECCCeEEEEeCCCCeeeEeecccc--ccEE
Q psy12697        385 HIHVCKLHSDKPVKSFEGH--TN-------EVNAIKWDPQGL---LLASCSDDMTLKIWSLDKDNCVHDLQAHN--KEIY  450 (602)
Q Consensus       385 ~i~i~d~~~~~~~~~~~~~--~~-------~i~~~~~~~~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~~~~--~~i~  450 (602)
                      .|..+|..+++.+-.++..  ..       ...-+...++|+   .++.++.+|.+.++|..+++.+.......  ....
T Consensus       273 ~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~  352 (571)
T 2ad6_A          273 TIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFK  352 (571)
T ss_dssp             EEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEE
T ss_pred             EEEEEecCCCcEEEEecCCCCcccccccCCCCEEEecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCccccc
Confidence            6999999999988766532  11       111122234674   67788899999999999999887765322  1111


Q ss_pred             EEEECCCCCCCCC------CCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEe-------------------------
Q psy12697        451 TIKWSPTGPETSN------PNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAG-------------------------  499 (602)
Q Consensus       451 ~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~-------------------------  499 (602)
                      .+.... +.....      ........+.....++.  -..++++|+..+++...                         
T Consensus       353 ~~d~~~-g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~--w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~  429 (571)
T 2ad6_A          353 KVDLKT-GTPVRDPEFATRMDHKGTNICPSAMGFHN--QGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATL  429 (571)
T ss_dssp             EECTTT-CSEEECGGGCCCTTCCEEEESSCTTCSSC--SCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEE
T ss_pred             cccccC-CceecccccCCCCCCCceEECCCCccccC--CCCceECCCCCEEEEEchhccccccccccccccCCccccccc
Confidence            111000 000000      00000000001111111  12456666655555442                         


Q ss_pred             ------------CCCeEEEEeCCCCceeeeecccCCCeeEeeec-CCceEEEeeCCCcEEEeecCCCCceeeeec
Q psy12697        500 ------------VDKTTIIWDAASGQCEQQFSFHSAPALDVDWQ-SNTSFASCSTDQHIHVCKLHSDKPVKSFEG  561 (602)
Q Consensus       500 ------------~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s-~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~  561 (602)
                                  .+|.|..||+.+++.+.++... .++....+. .++.+++++.|+.|+.||.++++.+..++.
T Consensus       430 ~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~-~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~~~~  503 (571)
T 2ad6_A          430 AMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEK-FAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKM  503 (571)
T ss_dssp             EEEECTTSTTSCCCEEEEEECTTTCCEEEEEEES-SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred             eeccCccccCCCCCCeEEEEECCCCCEEEEecCC-CCccceeEEECCCEEEEEcCCCeEEEEECCCCCEEEEEeC
Confidence                        3588999999999988777633 333333333 344777899999999999998888877653

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.95  E-value=1.1e-07  Score=93.73  Aligned_cols=247  Identities=7%  Similarity=0.032  Sum_probs=146.3

Q ss_pred             cCCCEEEEEec-CCcEEEEeCCCCceeEEeeecc-CCeeeeec-c-CCC-eEEEee------------------CCCeEE
Q psy12697        331 KRGNYILSAGV-DKTTIIWDAASGQCEQQFSFHS-APALDVDW-Q-SNT-SFASCS------------------TDQHIH  387 (602)
Q Consensus       331 ~~~~~l~~~~~-dg~i~~wd~~~~~~~~~~~~~~-~~~~~~~~-~-~~~-~~~~~~------------------~~~~i~  387 (602)
                      +||+++..... ++.|.+.|+.+.++...+.... .....+.+ . |++ .+++++                  .++.+.
T Consensus        99 ~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vt  178 (595)
T 1fwx_A           99 YDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFT  178 (595)
T ss_dssp             EEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEE
T ss_pred             cCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEE
Confidence            47888877665 5579999999999888665432 34556665 3 554 444442                  245799


Q ss_pred             EEEcCCCceeeEeccCCCCeEEEEECCCCCEEEEEECCC---------------eEEEEeCCCCeeeEeecccc---ccE
Q psy12697        388 VCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDM---------------TLKIWSLDKDNCVHDLQAHN---KEI  449 (602)
Q Consensus       388 i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg---------------~i~iwd~~~~~~~~~~~~~~---~~i  449 (602)
                      ++|..+.+.+.++.-.. ....++++|+|+++++.+.+.               .|.+.|....+... -.+..   +.|
T Consensus       179 vID~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v-~~Gk~~~i~~V  256 (595)
T 1fwx_A          179 AVDADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAI-AAGDYQELNGV  256 (595)
T ss_dssp             EEETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHH-HHTCSEEETTE
T ss_pred             EEECCCCeEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEec-cCCCeeEECcE
Confidence            99999998887776433 456788999999999998763               35666643221100 00000   111


Q ss_pred             EEEEECCCCCCCCCCCcce-eeeeeeccCCccCCeEEEEEccCCCEEEEEe-CCCeEEEEeCCCCc------------ee
Q psy12697        450 YTIKWSPTGPETSNPNMSL-IFILKSTLGQHKGPIFALKWNKRGNYILSAG-VDKTTIIWDAASGQ------------CE  515 (602)
Q Consensus       450 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~-~dg~i~iwd~~~~~------------~~  515 (602)
                      .-+......       ... ...+     .-.....++.++|||+++++++ .+.+|.++|+.+.+            ..
T Consensus       257 ~VID~~~~~-------~~~~~~~I-----pvg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~  324 (595)
T 1fwx_A          257 KVVDGRKEA-------SSLFTRYI-----PIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVV  324 (595)
T ss_dssp             EEEECSGGG-------CCSSEEEE-----EEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEE
T ss_pred             EEEeCcccC-------CceeEEEE-----ecCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceE
Confidence            111111000       000 0000     0112446799999999877665 57899999999653            23


Q ss_pred             eeecccCCCeeEeeecCCc-eEEEeeCCCcEEEeecCCCCceeeeecccccceEEEEecCCcE------EEEEECCCCCe
Q psy12697        516 QQFSFHSAPALDVDWQSNT-SFASCSTDQHIHVCKLHSDKPVKSFEGHTTGQLVHSYKGTGGI------FEVCWNSRGDK  588 (602)
Q Consensus       516 ~~~~~~~~~v~~~~~s~~~-~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~i------~~l~~spdg~~  588 (602)
                      .... -......++|+|+| .+++.-.|+.|.+||+....  ..+.+....+.+..+..+-..      ..+.++|||++
T Consensus       325 ~~v~-vG~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~--~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~  401 (595)
T 1fwx_A          325 AEPE-LGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAI--RAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDW  401 (595)
T ss_dssp             ECCB-CCSCEEEEEECTTSEEEEEETTTTEEEEEEHHHHH--HHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSE
T ss_pred             EEcC-CCCCcceEEECCCCeEEEEEecCCcEEEEEhhHhh--hhhcccccceeEEEeecccccccceeccceEeCCCCCE
Confidence            3333 23457789999999 66677889999999987611  011111111222222222222      12246899999


Q ss_pred             EEEecc
Q psy12697        589 VGASAS  594 (602)
Q Consensus       589 l~~~~~  594 (602)
                      |+++..
T Consensus       402 l~~~Nk  407 (595)
T 1fwx_A          402 LVCLSK  407 (595)
T ss_dssp             EEEEES
T ss_pred             EEEcCC
Confidence            998765

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.94  E-value=6.7e-07  Score=79.72  Aligned_cols=206  Identities=6%  Similarity=0.026  Sum_probs=134.6

Q ss_pred             eeEEeeeccC-CeeeeeccCCCeEEEeeC---CCeEEEEEcCCCceeeEeccCCC-CeEEEEECCCCCEEEE-EECCCeE
Q psy12697        355 CEQQFSFHSA-PALDVDWQSNTSFASCST---DQHIHVCKLHSDKPVKSFEGHTN-EVNAIKWDPQGLLLAS-CSDDMTL  428 (602)
Q Consensus       355 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~---~~~i~i~d~~~~~~~~~~~~~~~-~i~~~~~~~~~~~l~~-~~~dg~i  428 (602)
                      .+..+..... ....+.+++++.++.++.   ++.|.++|+.+++.+..+.-... ....++++  ++.|.. .-.++.+
T Consensus        11 vv~~~p~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~~v   88 (266)
T 2iwa_A           11 VLNEFPHDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLKNIG   88 (266)
T ss_dssp             EEEEEECCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTCSEE
T ss_pred             EEEEEECCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecCCEE
Confidence            3444543332 356788888777666643   58999999999998887653222 23345555  445544 4467899


Q ss_pred             EEEeCCCCeeeEeeccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCCCeEEEEe
Q psy12697        429 KIWSLDKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWD  508 (602)
Q Consensus       429 ~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd  508 (602)
                      .++|..+.+.+.++... .        |.                           ...+++||+.++++..++.|.++|
T Consensus        89 ~viD~~t~~v~~~i~~g-~--------~~---------------------------g~glt~Dg~~l~vs~gs~~l~viD  132 (266)
T 2iwa_A           89 FIYDRRTLSNIKNFTHQ-M--------KD---------------------------GWGLATDGKILYGSDGTSILYEID  132 (266)
T ss_dssp             EEEETTTTEEEEEEECC-S--------SS---------------------------CCEEEECSSSEEEECSSSEEEEEC
T ss_pred             EEEECCCCcEEEEEECC-C--------CC---------------------------eEEEEECCCEEEEECCCCeEEEEE
Confidence            99999999888776432 0        00                           122455777777777789999999


Q ss_pred             CCCCceeeeecccC-----CCeeEeeecCCc-eEEEeeCCCcEEEeecCCCCceeeeecccccce--EEEEecCCcEEEE
Q psy12697        509 AASGQCEQQFSFHS-----APALDVDWQSNT-SFASCSTDQHIHVCKLHSDKPVKSFEGHTTGQL--VHSYKGTGGIFEV  580 (602)
Q Consensus       509 ~~~~~~~~~~~~~~-----~~v~~~~~s~~~-~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~--~~~~~~~~~i~~l  580 (602)
                      ..+.+.+..+....     ..+..+.|. ++ .++....++.|.+.|..+++.+..++.......  ............+
T Consensus       133 ~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGI  211 (266)
T 2iwa_A          133 PHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGI  211 (266)
T ss_dssp             TTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEE
T ss_pred             CCCCcEEEEEEECCCCcccccceeEEEE-CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEE
Confidence            99998887776322     135677888 67 555555688999999999998888764210000  0000011346899


Q ss_pred             EECCCCCeEEEecc-CCeEE
Q psy12697        581 CWNSRGDKVGASAS-DGSVF  599 (602)
Q Consensus       581 ~~spdg~~l~~~~~-dg~v~  599 (602)
                      +|+|+++.|++++. .+.++
T Consensus       212 a~~~~~~~lfVTgk~~~~v~  231 (266)
T 2iwa_A          212 AWDQENKRIFVTGKLWPKLF  231 (266)
T ss_dssp             EEETTTTEEEEEETTCSEEE
T ss_pred             EEcCCCCEEEEECCCCCeEE
Confidence            99999987766664 45444

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.93  E-value=1.9e-07  Score=81.98  Aligned_cols=189  Identities=8%  Similarity=0.010  Sum_probs=129.4

Q ss_pred             eeeeeccCCCeEEEeeCCCeEEEEEcCCCceeeEeccCCC-CeEEEEECCCCCEEEEEECCCeEEEEeCCCCeeeEeecc
Q psy12697        366 ALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEGHTN-EVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHDLQA  444 (602)
Q Consensus       366 ~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~-~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~  444 (602)
                      ...+.|..+..+.+.+.+|.|+.+|+.+++.+..+ -... .-..+++..+ ++.+..-.++.+.+||..+.+.+.++..
T Consensus        57 tqGL~~~~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~g~-~Ly~ltw~~~~v~V~D~~Tl~~~~ti~~  134 (268)
T 3nok_A           57 TQGLVFHQGHFFESTGHQGTLRQLSLESAQPVWME-RLGNIFAEGLASDGE-RLYQLTWTEGLLFTWSGMPPQRERTTRY  134 (268)
T ss_dssp             EEEEEEETTEEEEEETTTTEEEECCSSCSSCSEEE-ECTTCCEEEEEECSS-CEEEEESSSCEEEEEETTTTEEEEEEEC
T ss_pred             cceEEEECCEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCcceeEEEEeCC-EEEEEEccCCEEEEEECCcCcEEEEEeC
Confidence            35677776666778888899999999999988777 2222 1234555433 4444455689999999999999888764


Q ss_pred             ccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeeecccC--
Q psy12697        445 HNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHS--  522 (602)
Q Consensus       445 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~--  522 (602)
                      ....                                     ..+++|++.|+.+..++.|.++|.++.+.+..+....  
T Consensus       135 ~~eG-------------------------------------wGLt~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g  177 (268)
T 3nok_A          135 SGEG-------------------------------------WGLCYWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRG  177 (268)
T ss_dssp             SSCC-------------------------------------CCEEEETTEEEEECSSSEEEEECTTTCCEEEEEECEETT
T ss_pred             CCce-------------------------------------eEEecCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCC
Confidence            2110                                     1222467777777779999999999999887776422  


Q ss_pred             C---CeeEeeecCCc-eEEEeeCCCcEEEeecCCCCceeeeecccccceEE--EEecCCcEEEEEECCCCCeEEEecc
Q psy12697        523 A---PALDVDWQSNT-SFASCSTDQHIHVCKLHSDKPVKSFEGHTTGQLVH--SYKGTGGIFEVCWNSRGDKVGASAS  594 (602)
Q Consensus       523 ~---~v~~~~~s~~~-~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~l~~spdg~~l~~~~~  594 (602)
                      .   .++.+.|. +| .++..-.++.|.+.|..+++.+..+....-.....  ......-.+.|||+|+++.|++++.
T Consensus       178 ~~v~~lNeLe~~-dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK  254 (268)
T 3nok_A          178 QPVELINELECA-NGVIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGK  254 (268)
T ss_dssp             EECCCEEEEEEE-TTEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEET
T ss_pred             cccccccccEEe-CCEEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCC
Confidence            1   34567777 66 45555568899999999999888876431100000  0112245789999999888887765

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.93  E-value=2.3e-07  Score=81.53  Aligned_cols=189  Identities=9%  Similarity=0.076  Sum_probs=126.6

Q ss_pred             eeeeeccCCCeEEEeeCCC--eEEEEEcCCCceeeEeccCCCC-eEEEEECCCCCEEEEE-ECCCeEEEEeCCCCeeeEe
Q psy12697        366 ALDVDWQSNTSFASCSTDQ--HIHVCKLHSDKPVKSFEGHTNE-VNAIKWDPQGLLLASC-SDDMTLKIWSLDKDNCVHD  441 (602)
Q Consensus       366 ~~~~~~~~~~~~~~~~~~~--~i~i~d~~~~~~~~~~~~~~~~-i~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~  441 (602)
                      ...+.|+.+..+.+.+.+|  .|+.+|+.+++.+..+...... -..+++  +++.|... -.++.+.+||..+.+.+.+
T Consensus        45 tqGL~~~~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~--~g~~ly~ltw~~~~v~v~D~~t~~~~~t  122 (262)
T 3nol_A           45 TEGFFYRNGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISD--WKDKIVGLTWKNGLGFVWNIRNLRQVRS  122 (262)
T ss_dssp             EEEEEEETTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEE--ETTEEEEEESSSSEEEEEETTTCCEEEE
T ss_pred             cceEEEECCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEE--eCCEEEEEEeeCCEEEEEECccCcEEEE
Confidence            3567777544455666655  8999999999988887643322 123444  34455444 4588999999999998888


Q ss_pred             eccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeeeccc
Q psy12697        442 LQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFH  521 (602)
Q Consensus       442 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~  521 (602)
                      +.....                                     ...+++|++.|+.+..++.|.++|..+.+.+..+...
T Consensus       123 i~~~~e-------------------------------------G~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~  165 (262)
T 3nol_A          123 FNYDGE-------------------------------------GWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVT  165 (262)
T ss_dssp             EECSSC-------------------------------------CCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECE
T ss_pred             EECCCC-------------------------------------ceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEec
Confidence            764211                                     1123346677777766888999999999988776642


Q ss_pred             C-----CCeeEeeecCCc-eEEEeeCCCcEEEeecCCCCceeeeecccccceEE-EEecCCcEEEEEECCCCCeEEEecc
Q psy12697        522 S-----APALDVDWQSNT-SFASCSTDQHIHVCKLHSDKPVKSFEGHTTGQLVH-SYKGTGGIFEVCWNSRGDKVGASAS  594 (602)
Q Consensus       522 ~-----~~v~~~~~s~~~-~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~l~~spdg~~l~~~~~  594 (602)
                      .     ..++.+.|. +| .++..-.++.|.+.|..+++.+..+....-..... ..........|||+|+++.|++++.
T Consensus       166 ~~g~~~~~lNELe~~-~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK  244 (262)
T 3nol_A          166 AHGEELPELNELEWV-DGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK  244 (262)
T ss_dssp             ETTEECCCEEEEEEE-TTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred             cCCccccccceeEEE-CCEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence            2     224457776 67 55555568899999999999888876431110000 0111245789999999999888876

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=98.91  E-value=7.1e-05  Score=76.54  Aligned_cols=413  Identities=10%  Similarity=-0.004  Sum_probs=206.1

Q ss_pred             ccceeeeecccce-eeeeeeccCCceEEEEECCCCCeEEEee-CCceEEEEecCCcee-EEEeec-cCceEEEEeCCCCC
Q psy12697        119 RLTLPLWDVERGE-CLNTLTRHTEPVYSVAFSPDGKFLASGS-FDKCVHIWSARTGQL-VHSYKG-TGGIFEVCWNSRGT  194 (602)
Q Consensus       119 ~~~i~vwd~~~~~-~~~~l~~h~~~V~~~~~s~d~~~l~s~~-~d~~v~iwd~~~~~~-~~~~~~-~~~~~~~~~~~~~~  194 (602)
                      +..|+..|+.... ....+...-..+..++|++.+..|.-+. ..+.|..+++..... ...+.. ......+++...+.
T Consensus        17 ~~~I~~i~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~~   96 (619)
T 3s94_A           17 RRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGE   96 (619)
T ss_dssp             SSBEEEECCC---------CBCCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETTTT
T ss_pred             cccEEEEeCCCCcceEEEEEcCCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecCC
Confidence            4567777776543 2222333445678999999666665544 568899898876532 222222 24567777776444


Q ss_pred             CCCCCC-CccccccccccCCcceEee-CCCcceEEEEEcCCCCEEEEeeC--CCcEEEEeCCCCCCCCCccceEEEEEEe
Q psy12697        195 PPNPPE-SMEVDASIEIPQSKATKLI-GHESEVFICAWNPVKDFLASGSG--DSTARIWDMTDSTKKDPKELQIVLRHCI  270 (602)
Q Consensus       195 ~~~~~~-~~~~~~~~~~~~~~~~~l~-~h~~~v~~~~~~~~~~~l~s~~~--dg~i~iw~~~~~~~~~~~~~~~~~~~~~  270 (602)
                      .+.... .................+. ..-.....+++.|.+..|+.+..  .+.|...+++.....      ....   
T Consensus        97 ~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~------~l~~---  167 (619)
T 3s94_A           97 KLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRF------IIIN---  167 (619)
T ss_dssp             EEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCE------EEEC---
T ss_pred             EEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceE------EEEe---
Confidence            332222 1122222233333333333 34455778899987666655543  345555555432211      0000   


Q ss_pred             cCCCcccCCCCceeEEeeCCCCCeEEEE-eCCCeEEEEcCCCcceeeccc-ccCCeEEEEEccCCCEEEEE-ecCCcEEE
Q psy12697        271 SKGGTEVPSNKDVTSLDWNNNGSFLATG-SYDGYARIWTSDGSLKSTLGQ-HKGPIFALKWNKRGNYILSA-GVDKTTII  347 (602)
Q Consensus       271 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~i~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~-~~dg~i~~  347 (602)
                             ..-.....+++++++..|..+ ...+.|..++.+|.....+.. .......+++..+  .|+.+ ...+.|..
T Consensus       168 -------~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~gi~~~~~--~ly~td~~~~~V~~  238 (619)
T 3s94_A          168 -------SEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFED--ILYWTDWSTHSILA  238 (619)
T ss_dssp             -------SSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC---------CCCEEESSS--EEEEECTTTCSEEE
T ss_pred             -------CCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEEEeCCCCCceEEEEeCC--EEEEecCCCCEEEE
Confidence                   012456889999876666555 445789999988765544322 1222346666654  45444 45677888


Q ss_pred             EeCCCCceeEEeeecc-------------CC------------e--eee-----------ec-----cCC--------Ce
Q psy12697        348 WDAASGQCEQQFSFHS-------------AP------------A--LDV-----------DW-----QSN--------TS  376 (602)
Q Consensus       348 wd~~~~~~~~~~~~~~-------------~~------------~--~~~-----------~~-----~~~--------~~  376 (602)
                      .|..+++....+....             .+            .  .|+           +.     .++        ..
T Consensus       239 ~d~~tg~~~~~i~~~~~~p~~i~v~~~~~qp~~~n~C~~~ng~Cs~lCl~~~~~~~~~C~C~~g~~l~~d~~~C~~~~~~  318 (619)
T 3s94_A          239 CNKYTGEGLREIHSDIFSPMDIHAFSQQRQPNATNPCGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTCKDGATE  318 (619)
T ss_dssp             EESSSCCCCEECCSCCCCCSEEEECCGGGSCCCCCTTTTTGGGCSSEEEECSSTTSEEEECCTTCCBCTTSSCBCSSCSE
T ss_pred             EECCCCcccEEEecCCCCCcEEEEEccccCCCccccccCCCCcccceEECCCCCCCceEeCCchheecccCcccCCCCce
Confidence            8877665433221100             00            0  000           00     001        11


Q ss_pred             EEEeeCCCeEEEEEcCCCceee-Eec-cCCCCeEEEEECCCCCEEEEEE-CCCeEEEEeCCCCeeeEeeccccccEEEEE
Q psy12697        377 FASCSTDQHIHVCKLHSDKPVK-SFE-GHTNEVNAIKWDPQGLLLASCS-DDMTLKIWSLDKDNCVHDLQAHNKEIYTIK  453 (602)
Q Consensus       377 ~~~~~~~~~i~i~d~~~~~~~~-~~~-~~~~~i~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~  453 (602)
                      ++..+..+.|+..++....... .+. ..-..+..++|++.+..|+.+. ..+.|+.+++........+..         
T Consensus       319 ~Ll~~~~~~i~~i~l~~~~~~~~~~~~~~l~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~~---------  389 (619)
T 3s94_A          319 LLLLARRTDLRRISLDTPDFTDIVLQLEDIRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTA---------  389 (619)
T ss_dssp             EEEEEESSCEEEEESSSTTCCCEECCCSCCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECS---------
T ss_pred             EEEEEcccceEEEecCCCccceeEEeccccCccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEEEC---------
Confidence            3333344556666665443211 111 1123467888888555555444 466777777654321111110         


Q ss_pred             ECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccC-CCEEEEEeCCCeEEEEeCCCCceeeeecccCCCeeEeeecC
Q psy12697        454 WSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKR-GNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQS  532 (602)
Q Consensus       454 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~  532 (602)
                                               .-.....+++.+. +++.++-...+.|.+.++........+...-.....+++.|
T Consensus       390 -------------------------~~~~p~GlAvD~~~~~lY~tD~~~~~I~v~~~~G~~~~~l~~~~l~~P~~iavdp  444 (619)
T 3s94_A          390 -------------------------QIAHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGTMRKILISEDLEEPRAIVLDP  444 (619)
T ss_dssp             -------------------------SCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCCSEEEEEEET
T ss_pred             -------------------------CCCCcCceEEecccCcEEEEeCCCCcEEEEeCCCCeEEEEEECCCCCeeeEEEEc
Confidence                                     1123456777764 44555555678899999875433222222334678999998


Q ss_pred             C-ceEEEeeC--CCcEEEeecCCCCceeeeecccccceEEEEecCCcEEEEEECCCCCeEEEecc
Q psy12697        533 N-TSFASCST--DQHIHVCKLHSDKPVKSFEGHTTGQLVHSYKGTGGIFEVCWNSRGDKVGASAS  594 (602)
Q Consensus       533 ~-~~l~~~~~--d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~  594 (602)
                      . |.|..+..  ...|...+++..... .+-..          .-.....|+++++++.|..+..
T Consensus       445 ~~G~ly~tD~g~~~~I~r~~~dG~~~~-~l~~~----------~l~~P~GlalD~~~~~LY~aD~  498 (619)
T 3s94_A          445 MVGYMYWTDWGEIPKIERAALDGSDRV-VLVNT----------SLGWPNGLALDYDEGKIYWGDA  498 (619)
T ss_dssp             TTTEEEEEECSSSCEEEEEETTSCSCE-EEECS----------SCSCEEEEEEETTTTEEEEEET
T ss_pred             CCCcEEEecCCCCCEEEEEccCCCccE-EEEeC----------CCCCCeeeEEcccCCEEEEEEC
Confidence            6 55544432  356666665432211 11100          1134567778877666666544

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=98.91  E-value=4e-07  Score=92.47  Aligned_cols=302  Identities=11%  Similarity=0.055  Sum_probs=167.9

Q ss_pred             CCeEEEeeC-CceEEEEec-CCceeEEEeeccCceEEEEeCCCCCCCCCCCCccccccccccCCcceEeeCCCcceEEEE
Q psy12697        152 GKFLASGSF-DKCVHIWSA-RTGQLVHSYKGTGGIFEVCWNSRGTPPNPPESMEVDASIEIPQSKATKLIGHESEVFICA  229 (602)
Q Consensus       152 ~~~l~s~~~-d~~v~iwd~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~  229 (602)
                      +..+..++. ++.|.-+|. .+|+.+-++.......                  .   .....   .. ......    +
T Consensus        62 ~g~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~------------------~---~~~~~---~~-~~~~~~----~  112 (571)
T 2ad6_A           62 GDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDAS------------------T---KAVMC---CD-VVDRGL----A  112 (571)
T ss_dssp             TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGG------------------G---GGGCT---TC-SCCCCC----E
T ss_pred             CCEEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCcc------------------c---ccccc---cc-cccccc----E
Confidence            455666666 899999999 9999887654321000                  0   00000   00 000011    1


Q ss_pred             EcCCCCEEEEeeCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEeeCC--CCCeEEEEeC------C
Q psy12697        230 WNPVKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNN--NGSFLATGSY------D  301 (602)
Q Consensus       230 ~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~l~~~~~------d  301 (602)
                      .  .+..++.++.|+.+..+|..+++........          ....  ...+.   -+|  .+..+++++.      +
T Consensus       113 ~--~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~----------~~~~--~~~~~---~~P~v~~g~v~vg~~~~~~~~~  175 (571)
T 2ad6_A          113 Y--GAGQIVKKQANGHLLALDAKTGKINWEVEVC----------DPKV--GSTLT---QAPFVAKDTVLMGCSGAELGVR  175 (571)
T ss_dssp             E--ETTEEEEECTTSEEEEEETTTCCEEEEEECC----------CGGG--TCBCC---SCCEEETTEEEEECBCGGGTCC
T ss_pred             E--ECCEEEEEeCCCEEEEEECCCCCEEEEecCC----------CCCc--cceec---cCCEEECCEEEEEecCCccCCC
Confidence            1  2557778888999999999888754221110          0000  00111   111  1335555554      7


Q ss_pred             CeEEEEcCC-CcceeecccccC--------------------------------------CeEEEEEccCCCEEEEEecC
Q psy12697        302 GYARIWTSD-GSLKSTLGQHKG--------------------------------------PIFALKWNKRGNYILSAGVD  342 (602)
Q Consensus       302 g~i~i~~~~-~~~~~~~~~~~~--------------------------------------~i~~~~~~~~~~~l~~~~~d  342 (602)
                      |.|..+|.. |+.+-.+.....                                      ....+++.++...++.++.+
T Consensus       176 g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~  255 (571)
T 2ad6_A          176 GAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGN  255 (571)
T ss_dssp             CEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCC
T ss_pred             CEEEEEECCCCcEEEEEccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCC
Confidence            899999975 555443321110                                      00135566666677666532


Q ss_pred             ----------------CcEEEEeCCCCceeEEeeeccCC------eee---eeccCCC----eEEEeeCCCeEEEEEcCC
Q psy12697        343 ----------------KTTIIWDAASGQCEQQFSFHSAP------ALD---VDWQSNT----SFASCSTDQHIHVCKLHS  393 (602)
Q Consensus       343 ----------------g~i~~wd~~~~~~~~~~~~~~~~------~~~---~~~~~~~----~~~~~~~~~~i~i~d~~~  393 (602)
                                      +.|..+|..+++.+..++.....      ...   +....++    .++.++.+|.++++|..+
T Consensus       256 ~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l~~~~~~G~~~~~v~~~~~~G~l~~lD~~t  335 (571)
T 2ad6_A          256 PAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNREN  335 (571)
T ss_dssp             CSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTT
T ss_pred             CccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCcccccccCCCCEEEecccCCcEEEEEEEeCCCcEEEEEECCC
Confidence                            35999999999998877643211      111   1111234    366788899999999999


Q ss_pred             CceeeEeccCC-------------CCe--------------------------EEEEECCCCCEEEEEECC---------
Q psy12697        394 DKPVKSFEGHT-------------NEV--------------------------NAIKWDPQGLLLASCSDD---------  425 (602)
Q Consensus       394 ~~~~~~~~~~~-------------~~i--------------------------~~~~~~~~~~~l~~~~~d---------  425 (602)
                      ++.+.......             .++                          ..++++|+..++++...+         
T Consensus       336 G~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~  415 (571)
T 2ad6_A          336 GNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFM  415 (571)
T ss_dssp             CCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECC
T ss_pred             CCEEeeecccCCccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccc
Confidence            98876554221             111                          246788888888777644         


Q ss_pred             ----------------------------CeEEEEeCCCCeeeEeeccccccEEEEEECCCCCCCCCCCcceeeeeeeccC
Q psy12697        426 ----------------------------MTLKIWSLDKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLG  477 (602)
Q Consensus       426 ----------------------------g~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  477 (602)
                                                  |.|..||+.+++.+.++...                                
T Consensus       416 ~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~--------------------------------  463 (571)
T 2ad6_A          416 LPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEK--------------------------------  463 (571)
T ss_dssp             CCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEES--------------------------------
T ss_pred             cccccCCccccccceeccCccccCCCCCCeEEEEECCCCCEEEEecCC--------------------------------
Confidence                                        34444444444443333211                                


Q ss_pred             CccCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeeecccCCC-eeEeeecCCc
Q psy12697        478 QHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAP-ALDVDWQSNT  534 (602)
Q Consensus       478 ~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~-v~~~~~s~~~  534 (602)
                         ..+....+...+..++.++.||.|+.||.++|+.+..+...... -.-+.+..+|
T Consensus       464 ---~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~~~~~G  518 (571)
T 2ad6_A          464 ---FAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFKG  518 (571)
T ss_dssp             ---SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETT
T ss_pred             ---CCccceeEEECCCEEEEEcCCCeEEEEECCCCCEEEEEeCCCCcEeeeEEEEECC
Confidence               11111112224567777899999999999999999888754322 1223355677

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.90  E-value=3.2e-07  Score=80.55  Aligned_cols=183  Identities=12%  Similarity=-0.019  Sum_probs=131.1

Q ss_pred             CeEEEEEccCCCEEEEEecCCcEEEEeCCCCceeEEeeeccCC-eeeeeccCCCeEEEeeCCCeEEEEEcCCCceeeEec
Q psy12697        323 PIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAP-ALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFE  401 (602)
Q Consensus       323 ~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~  401 (602)
                      ....+.|+ ++....+.+.+|.|+.+|+.+++.+..+ ..... ...++...+..+.+.-.++.+.+||..+.+.+.++.
T Consensus        56 ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~g~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~  133 (268)
T 3nok_A           56 FTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME-RLGNIFAEGLASDGERLYQLTWTEGLLFTWSGMPPQRERTTR  133 (268)
T ss_dssp             CEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE-ECTTCCEEEEEECSSCEEEEESSSCEEEEEETTTTEEEEEEE
T ss_pred             ccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCcceeEEEEeCCEEEEEEccCCEEEEEECCcCcEEEEEe
Confidence            34788887 3566677788899999999999999888 44332 233666667777777789999999999999998887


Q ss_pred             cCCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeeeEeeccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccC
Q psy12697        402 GHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKG  481 (602)
Q Consensus       402 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  481 (602)
                      .... -..++  ++++.|+.+..++.|.++|..+.+.+.++......                             ..-.
T Consensus       134 ~~~e-GwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g-----------------------------~~v~  181 (268)
T 3nok_A          134 YSGE-GWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRG-----------------------------QPVE  181 (268)
T ss_dssp             CSSC-CCCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEETT-----------------------------EECC
T ss_pred             CCCc-eeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCC-----------------------------cccc
Confidence            5322 23333  56888888877899999999998887776532110                             0112


Q ss_pred             CeEEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeeeccc-------------CCCeeEeeecCCc-eEEEee
Q psy12697        482 PIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFH-------------SAPALDVDWQSNT-SFASCS  540 (602)
Q Consensus       482 ~v~~i~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-------------~~~v~~~~~s~~~-~l~~~~  540 (602)
                      .++.+.|. +|+..+....+..|.+.|.++++.+..+...             .+-.+.|+++|++ .|++.+
T Consensus       182 ~lNeLe~~-dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG  253 (268)
T 3nok_A          182 LINELECA-NGVIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG  253 (268)
T ss_dssp             CEEEEEEE-TTEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred             cccccEEe-CCEEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence            33455555 6766666667889999999999988776632             1356889999988 555544

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.89  E-value=1.2e-06  Score=82.54  Aligned_cols=233  Identities=8%  Similarity=0.033  Sum_probs=147.0

Q ss_pred             ceeEEeeCCCCCeEEEEeCCCeEEEEcCCCcceeeccc--------------------ccCCeEEEEEcc-CCCEEEEEe
Q psy12697        282 DVTSLDWNNNGSFLATGSYDGYARIWTSDGSLKSTLGQ--------------------HKGPIFALKWNK-RGNYILSAG  340 (602)
Q Consensus       282 ~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~--------------------~~~~i~~~~~~~-~~~~l~~~~  340 (602)
                      ...+++|.+++++++++..++.|..|+..+.....+..                    ....+..+++.+ ++ .|+.+.
T Consensus        20 ~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g-~l~v~d   98 (322)
T 2fp8_A           20 APNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNN-QLYIVD   98 (322)
T ss_dssp             CCCCEECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTT-EEEEEE
T ss_pred             CceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCC-cEEEEE
Confidence            45778899999888888899999999987644433211                    123578899997 55 455565


Q ss_pred             cCCcEEEEeCCCCceeEEeee----ccCCeeeeeccC-CCeEEEeeC------------------CCeEEEEEcCCCcee
Q psy12697        341 VDKTTIIWDAASGQCEQQFSF----HSAPALDVDWQS-NTSFASCST------------------DQHIHVCKLHSDKPV  397 (602)
Q Consensus       341 ~dg~i~~wd~~~~~~~~~~~~----~~~~~~~~~~~~-~~~~~~~~~------------------~~~i~i~d~~~~~~~  397 (602)
                      ..+.+..+|..+++.......    .......+++.+ ++.+.++..                  ++.|..+|..+++..
T Consensus        99 ~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~  178 (322)
T 2fp8_A           99 CYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETT  178 (322)
T ss_dssp             TTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEE
T ss_pred             CCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEEE
Confidence            556688888776543221111    112456788888 777666543                  267888888766543


Q ss_pred             eEeccCCCCeEEEEECCCCCEEEEE-ECCCeEEEEeCCCCeeeEeeccccccEEEEEECCCCCCCCCCCcceeeeeeecc
Q psy12697        398 KSFEGHTNEVNAIKWDPQGLLLASC-SDDMTLKIWSLDKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTL  476 (602)
Q Consensus       398 ~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  476 (602)
                      .... .......++++|+++.|..+ +.++.|.+|++.....        .....+.                     ..
T Consensus       179 ~~~~-~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~--------~~~~~~~---------------------~~  228 (322)
T 2fp8_A          179 LLLK-ELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKK--------GTAEVLV---------------------KI  228 (322)
T ss_dssp             EEEE-EESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTT--------TCEEEEE---------------------EC
T ss_pred             Eecc-CCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcC--------CccceEE---------------------eC
Confidence            2222 22345679999999876665 4568899999874210        0000000                     00


Q ss_pred             CCccCCeEEEEEccCCCEEEEEeC----------CCeEEEEeCCCCceeeeecccC----CCeeEeeecCCc-eEEEeeC
Q psy12697        477 GQHKGPIFALKWNKRGNYILSAGV----------DKTTIIWDAASGQCEQQFSFHS----APALDVDWQSNT-SFASCST  541 (602)
Q Consensus       477 ~~~~~~v~~i~~s~~~~~l~s~~~----------dg~i~iwd~~~~~~~~~~~~~~----~~v~~~~~s~~~-~l~~~~~  541 (602)
                         .+ ...++++++|++.++...          .+.|..+|.. ++.+..+....    ..++.+++ .++ .+++...
T Consensus       229 ---~g-P~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~~-G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~  302 (322)
T 2fp8_A          229 ---PN-PGNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDEF-GNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLF  302 (322)
T ss_dssp             ---SS-EEEEEECTTSCEEEEEEEETTSSTTSCEEEEEEEECTT-SCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSS
T ss_pred             ---CC-CCCeEECCCCCEEEEecCcccccccCCCccEEEEECCC-CCEEEEEECCCCCccccceEEEE-eCCEEEEeecC
Confidence               11 456788888887776654          4678899874 77776665432    34666666 356 5556567


Q ss_pred             CCcEEEeecC
Q psy12697        542 DQHIHVCKLH  551 (602)
Q Consensus       542 d~~i~iw~~~  551 (602)
                      .+.|.++++.
T Consensus       303 ~~~i~~~~~~  312 (322)
T 2fp8_A          303 HGSVGILVYD  312 (322)
T ss_dssp             CSEEEEEEC-
T ss_pred             CCceEEEecc
Confidence            7889988864

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=98.88  E-value=1.6e-06  Score=88.22  Aligned_cols=156  Identities=17%  Similarity=0.208  Sum_probs=95.4

Q ss_pred             CcEEEEeCCCCceeEEeeeccC----------Ceeeeecc-CCC----eEEEeeCCCeEEEEEcCCCceeeEeccCCC--
Q psy12697        343 KTTIIWDAASGQCEQQFSFHSA----------PALDVDWQ-SNT----SFASCSTDQHIHVCKLHSDKPVKSFEGHTN--  405 (602)
Q Consensus       343 g~i~~wd~~~~~~~~~~~~~~~----------~~~~~~~~-~~~----~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~--  405 (602)
                      +.|..+|..+|+.+..++....          ++. +... .++    .++.++.+|.++++|..+++.+..+.....  
T Consensus       291 ~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l-~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~  369 (582)
T 1flg_A          291 SGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVL-FDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNIT  369 (582)
T ss_dssp             SEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEE-EEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCC
T ss_pred             ceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEE-EeeecCCCCEEEEEEEECCCceEEEEECCCCCEecccccccCcc
Confidence            5899999999999988764221          111 1111 233    577788999999999999988765543210  


Q ss_pred             -----------C--------------------------------eEEEEECCCCCEEEEEEC------------------
Q psy12697        406 -----------E--------------------------------VNAIKWDPQGLLLASCSD------------------  424 (602)
Q Consensus       406 -----------~--------------------------------i~~~~~~~~~~~l~~~~~------------------  424 (602)
                                 +                                -..++++|+..++++...                  
T Consensus       370 ~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~  449 (582)
T 1flg_A          370 WASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSA  449 (582)
T ss_dssp             SEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSC
T ss_pred             ccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcceeeecccccccCCCc
Confidence                       0                                013566776666665543                  


Q ss_pred             ---------------CCeEEEEeCCCCeeeEeeccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEc
Q psy12697        425 ---------------DMTLKIWSLDKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWN  489 (602)
Q Consensus       425 ---------------dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s  489 (602)
                                     +|.|.-||+.+++.+.+....                                   .++..-...
T Consensus       450 ~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~-----------------------------------~~~~~g~~~  494 (582)
T 1flg_A          450 YLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEH-----------------------------------LPLWAGVLA  494 (582)
T ss_dssp             CCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEES-----------------------------------SCCCSCCEE
T ss_pred             eeccceeecCCCCCCcceEEEEECCCCCEEEEecCC-----------------------------------CCCcccceE
Confidence                           344555555555444333211                                   011111111


Q ss_pred             cCCCEEEEEeCCCeEEEEeCCCCceeeeecccCCCe-eEeeecCCc
Q psy12697        490 KRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPA-LDVDWQSNT  534 (602)
Q Consensus       490 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v-~~~~~s~~~  534 (602)
                      ..+.+++.++.||.++.||.++|+.+..++...... .-+.+..+|
T Consensus       495 tagglvf~g~~dg~l~A~D~~tG~~lW~~~~~~g~~a~P~~y~~~G  540 (582)
T 1flg_A          495 TAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDG  540 (582)
T ss_dssp             ETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETT
T ss_pred             eCCCEEEEECCCCcEEEEECCCCCEEEEecCCCCcccCceEEEECC
Confidence            245678889999999999999999998887643322 125566777

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.84  E-value=9.9e-07  Score=76.85  Aligned_cols=190  Identities=8%  Similarity=0.007  Sum_probs=126.6

Q ss_pred             eeeeeccCCCeEEEeeCC--CeEEEEEcCCCceeeEeccCCCC-eEEEEECCCCCEEEEEECCCeEEEEeCCCCeeeEee
Q psy12697        366 ALDVDWQSNTSFASCSTD--QHIHVCKLHSDKPVKSFEGHTNE-VNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHDL  442 (602)
Q Consensus       366 ~~~~~~~~~~~~~~~~~~--~~i~i~d~~~~~~~~~~~~~~~~-i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~  442 (602)
                      ...+.|.++..+.+.+.+  +.|+.+|+.+++.+......... -..+++.. +++....-.++.+.+||..+.+.+.++
T Consensus        23 tqGL~~~~~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~-~~ly~ltw~~~~v~v~D~~tl~~~~ti  101 (243)
T 3mbr_X           23 TEGLFYLRGHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAWR-DRLIQLTWRNHEGFVYDLATLTPRARF  101 (243)
T ss_dssp             EEEEEEETTEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEET-TEEEEEESSSSEEEEEETTTTEEEEEE
T ss_pred             cccEEEECCEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEeC-CEEEEEEeeCCEEEEEECCcCcEEEEE
Confidence            456778775556666664  48999999999988877644332 12344432 334444556899999999999998887


Q ss_pred             ccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeeecccC
Q psy12697        443 QAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHS  522 (602)
Q Consensus       443 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~  522 (602)
                      ......                                     ..++++++.|+.+..++.|.++|..+.+.+..+....
T Consensus       102 ~~~~~G-------------------------------------wglt~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~  144 (243)
T 3mbr_X          102 RYPGEG-------------------------------------WALTSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTA  144 (243)
T ss_dssp             ECSSCC-------------------------------------CEEEECSSCEEEECSSSEEEEECTTTCCEEEEEECEE
T ss_pred             eCCCCc-------------------------------------eEEeeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEcc
Confidence            643211                                     1222456666666678999999999999887776432


Q ss_pred             -----CCeeEeeecCCc-eEEEeeCCCcEEEeecCCCCceeeeecccccceEEE--EecCCcEEEEEECCCCCeEEEecc
Q psy12697        523 -----APALDVDWQSNT-SFASCSTDQHIHVCKLHSDKPVKSFEGHTTGQLVHS--YKGTGGIFEVCWNSRGDKVGASAS  594 (602)
Q Consensus       523 -----~~v~~~~~s~~~-~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~l~~spdg~~l~~~~~  594 (602)
                           ..++.+.|. +| .++..-.+..|.+.|..+++.+..+....-......  .....-.+.+||+|+++.|++++.
T Consensus       145 ~g~~~~~lNeLe~~-~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK  223 (243)
T 3mbr_X          145 GGRPLDNLNELEWV-NGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK  223 (243)
T ss_dssp             TTEECCCEEEEEEE-TTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred             CCcccccceeeEEe-CCEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence                 234556665 56 445554678999999999998888764321000000  011245789999999988888775

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.81  E-value=1.4e-05  Score=74.34  Aligned_cols=225  Identities=13%  Similarity=0.123  Sum_probs=138.0

Q ss_pred             CceeEEeeCCCCCeEEEEeCCCeEEEEcCCCcceeecccccCCeEEEEEccCCCEEEEEecC--CcEEEEeCCCCceeEE
Q psy12697        281 KDVTSLDWNNNGSFLATGSYDGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVD--KTTIIWDAASGQCEQQ  358 (602)
Q Consensus       281 ~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d--g~i~~wd~~~~~~~~~  358 (602)
                      .....++|+++++++++-..++.|..|+.++....... .......+++.++++.+++....  ..|..+|..+++....
T Consensus        32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~~~~~~~-~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~~  110 (306)
T 2p4o_A           32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGNQQIHAT-VEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETL  110 (306)
T ss_dssp             CCEEEEEECTTSCEEEEETTTTEEEEECTTCCEEEEEE-CSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEE
T ss_pred             CCcceEEECCCCCEEEEeCCCCeEEEECCCCceEEEEe-CCCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEEEE
Confidence            45678999999987777668899999998876544332 33568899999999965554332  2477778777775433


Q ss_pred             eeecc-CCeeeeeccCCCeEEEee-CCCeEEEEEcCCCce-eeEe---------ccCCCCeEEEEECCCCCEEEEEE-CC
Q psy12697        359 FSFHS-APALDVDWQSNTSFASCS-TDQHIHVCKLHSDKP-VKSF---------EGHTNEVNAIKWDPQGLLLASCS-DD  425 (602)
Q Consensus       359 ~~~~~-~~~~~~~~~~~~~~~~~~-~~~~i~i~d~~~~~~-~~~~---------~~~~~~i~~~~~~~~~~~l~~~~-~d  425 (602)
                      ..... .....++..+++.+++.. .++.|+.+|..+++. +...         .........+  +|+++.|+.+. ..
T Consensus       111 ~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~~  188 (306)
T 2p4o_A          111 LTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNTEK  188 (306)
T ss_dssp             EECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEETTT
T ss_pred             EeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCEEEEEeCCC
Confidence            32211 112233334455544444 588999999876421 1110         0111234555  78887665554 56


Q ss_pred             CeEEEEeCCC-CeeeEeeccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCCCeE
Q psy12697        426 MTLKIWSLDK-DNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTT  504 (602)
Q Consensus       426 g~i~iwd~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i  504 (602)
                      +.|..|++.. ++. ..     ..+  +.                         .......++++++|+++++....+.|
T Consensus       189 ~~I~~~~~~~~g~~-~~-----~~~--~~-------------------------~~~~P~gi~vd~dG~l~va~~~~~~V  235 (306)
T 2p4o_A          189 MLLLRIPVDSTDKP-GE-----PEI--FV-------------------------EQTNIDDFAFDVEGNLYGATHIYNSV  235 (306)
T ss_dssp             TEEEEEEBCTTSCB-CC-----CEE--EE-------------------------ESCCCSSEEEBTTCCEEEECBTTCCE
T ss_pred             CEEEEEEeCCCCCC-Cc-----cEE--Ee-------------------------ccCCCCCeEECCCCCEEEEeCCCCeE
Confidence            7899999864 221 00     000  00                         00123458889999888877778899


Q ss_pred             EEEeCCCCceee--eecccCCCeeEeeec---CCc-eEEEeeCC
Q psy12697        505 IIWDAASGQCEQ--QFSFHSAPALDVDWQ---SNT-SFASCSTD  542 (602)
Q Consensus       505 ~iwd~~~~~~~~--~~~~~~~~v~~~~~s---~~~-~l~~~~~d  542 (602)
                      .++|.. ++...  .+.......++++|.   |++ .|++++..
T Consensus       236 ~~~~~~-G~~~~~~~~~~~~~~p~~~a~~g~~~d~~~LyVt~~~  278 (306)
T 2p4o_A          236 VRIAPD-RSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTNG  278 (306)
T ss_dssp             EEECTT-CCEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEECT
T ss_pred             EEECCC-CCEEEEeecccccCCceEEEEecccCCCCEEEEECCC
Confidence            999975 66532  343333568899998   886 55554443

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.80  E-value=2.4e-06  Score=74.44  Aligned_cols=186  Identities=12%  Similarity=0.079  Sum_probs=128.7

Q ss_pred             CCeEEEEEccCCCEEEEEecC--CcEEEEeCCCCceeEEeeeccCCe-eeeeccCCCeEEEeeCCCeEEEEEcCCCceee
Q psy12697        322 GPIFALKWNKRGNYILSAGVD--KTTIIWDAASGQCEQQFSFHSAPA-LDVDWQSNTSFASCSTDQHIHVCKLHSDKPVK  398 (602)
Q Consensus       322 ~~i~~~~~~~~~~~l~~~~~d--g~i~~wd~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~  398 (602)
                      .....+.|++ +....+.+.+  ..|+.+|+.+++.+.......... ..++...+..+...-.++.+.+||..+.+.+.
T Consensus        21 ~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~~ly~ltw~~~~v~v~D~~tl~~~~   99 (243)
T 3mbr_X           21 AFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLIQLTWRNHEGFVYDLATLTPRA   99 (243)
T ss_dssp             CCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEEEETTTTEEEE
T ss_pred             cccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEeCCEEEEEEeeCCEEEEEECCcCcEEE
Confidence            3467899986 5555566664  489999999999999887654432 33455555666666778999999999999998


Q ss_pred             EeccCCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeeeEeeccccccEEEEEECCCCCCCCCCCcceeeeeeeccCC
Q psy12697        399 SFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQ  478 (602)
Q Consensus       399 ~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  478 (602)
                      ++...... ..++  ++++.|+.+..++.|.++|..+.+.+.++.......                             
T Consensus       100 ti~~~~~G-wglt--~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~-----------------------------  147 (243)
T 3mbr_X          100 RFRYPGEG-WALT--SDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGR-----------------------------  147 (243)
T ss_dssp             EEECSSCC-CEEE--ECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTE-----------------------------
T ss_pred             EEeCCCCc-eEEe--eCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCc-----------------------------
Confidence            88754322 3444  567777777778999999999988777765321100                             


Q ss_pred             ccCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeeeccc-------------CCCeeEeeecCCc-eEEEeeC
Q psy12697        479 HKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFH-------------SAPALDVDWQSNT-SFASCST  541 (602)
Q Consensus       479 ~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-------------~~~v~~~~~s~~~-~l~~~~~  541 (602)
                      .-..++.+.+. +|+..+..-.+..|.+.|..+|+.+..+...             .+-.+.++++|++ .|++.+.
T Consensus       148 ~~~~lNeLe~~-~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK  223 (243)
T 3mbr_X          148 PLDNLNELEWV-NGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK  223 (243)
T ss_dssp             ECCCEEEEEEE-TTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred             ccccceeeEEe-CCEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence            01223344444 6666666656789999999999988776532             1246889999988 5555543

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.80  E-value=2.3e-06  Score=80.56  Aligned_cols=259  Identities=10%  Similarity=0.012  Sum_probs=146.3

Q ss_pred             CceEEEEECCCCCeEEEeeCCceEEEEecCCceeEEEeeccCceEEEEeCCCCCCCCCCCCccccccccccCCcceEeeC
Q psy12697        141 EPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKGTGGIFEVCWNSRGTPPNPPESMEVDASIEIPQSKATKLIG  220 (602)
Q Consensus       141 ~~V~~~~~s~d~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  220 (602)
                      ....+++++++|+++.++..++.|..||..+++.. .+........ .-..++..                   ......
T Consensus        19 ~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~-~~~~~~~~~~-~~~~~g~~-------------------~~~~~~   77 (322)
T 2fp8_A           19 YAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFV-DFAYASPYWN-KAFCENST-------------------DAEKRP   77 (322)
T ss_dssp             SCCCCEECCTTCSSEEEECTTSEEEEECCTTTCEE-EEEESCTTCC-HHHHTTCC-------------------CGGGHH
T ss_pred             CCceEEEEcCCCCEEEEEcCCCeEEEECCCCCceE-EEeccccccc-cccccccc-------------------chhccc
Confidence            34567889999998888888999999998765432 1210000000 00000000                   000000


Q ss_pred             CCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEeeCC-CCCeEEEEe
Q psy12697        221 HESEVFICAWNPVKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNN-NGSFLATGS  299 (602)
Q Consensus       221 h~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~  299 (602)
                      ....+..+++.+++..|+.+...+.|..+|..++...      .....   ..+   ........+++.+ +|++.++-.
T Consensus        78 ~~~~p~gi~~~~~~g~l~v~d~~~~i~~~d~~~g~~~------~~~~~---~~~---~~~~~p~~i~~d~~~G~l~v~d~  145 (322)
T 2fp8_A           78 LCGRTYDISYNLQNNQLYIVDCYYHLSVVGSEGGHAT------QLATS---VDG---VPFKWLYAVTVDQRTGIVYFTDV  145 (322)
T ss_dssp             HHCCEEEEEEETTTTEEEEEETTTEEEEECTTCEECE------EEESE---ETT---EECSCEEEEEECTTTCCEEEEES
T ss_pred             cCCCCceEEEcCCCCcEEEEECCCCEEEEeCCCCEEE------Eeccc---CCC---CcccccceEEEecCCCEEEEECC
Confidence            1234778999983334555544455777776543211      00000   000   0113467899999 897666543


Q ss_pred             C-----------------CCeEEEEcCCCcceeecccccCCeEEEEEccCCCEEEEE-ecCCcEEEEeCCCCc--eeEEe
Q psy12697        300 Y-----------------DGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSA-GVDKTTIIWDAASGQ--CEQQF  359 (602)
Q Consensus       300 ~-----------------dg~i~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~~wd~~~~~--~~~~~  359 (602)
                      .                 +|.|..|+..+.....+.........++++|+++.|+.+ +..+.|..+++....  ....+
T Consensus       146 ~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~  225 (322)
T 2fp8_A          146 STLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVL  225 (322)
T ss_dssp             CSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEEEEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEE
T ss_pred             cccccccccceehcccCCCceEEEEeCCCCEEEEeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceE
Confidence            2                 367888887644433332223345679999999876655 556889999987531  11112


Q ss_pred             eeccCCeeeeeccCCCeEEEeeC-----------CCeEEEEEcCCCceeeEeccCC----CCeEEEEECCCCCEEEEEEC
Q psy12697        360 SFHSAPALDVDWQSNTSFASCST-----------DQHIHVCKLHSDKPVKSFEGHT----NEVNAIKWDPQGLLLASCSD  424 (602)
Q Consensus       360 ~~~~~~~~~~~~~~~~~~~~~~~-----------~~~i~i~d~~~~~~~~~~~~~~----~~i~~~~~~~~~~~l~~~~~  424 (602)
                      ..... ...++..+++.+.++..           .+.|..+|.. ++.+..+....    ..++.+++ .+++++++...
T Consensus       226 ~~~~g-P~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~~-G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~  302 (322)
T 2fp8_A          226 VKIPN-PGNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDEF-GNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLF  302 (322)
T ss_dssp             EECSS-EEEEEECTTSCEEEEEEEETTSSTTSCEEEEEEEECTT-SCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSS
T ss_pred             EeCCC-CCCeEECCCCCEEEEecCcccccccCCCccEEEEECCC-CCEEEEEECCCCCccccceEEEE-eCCEEEEeecC
Confidence            11222 66778888776666553           3568888864 66666665432    34666766 35666666566


Q ss_pred             CCeEEEEeCCC
Q psy12697        425 DMTLKIWSLDK  435 (602)
Q Consensus       425 dg~i~iwd~~~  435 (602)
                      ++.|..+++..
T Consensus       303 ~~~i~~~~~~~  313 (322)
T 2fp8_A          303 HGSVGILVYDK  313 (322)
T ss_dssp             CSEEEEEEC--
T ss_pred             CCceEEEeccc
Confidence            78899998764

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=98.76  E-value=1.9e-06  Score=87.33  Aligned_cols=202  Identities=10%  Similarity=0.037  Sum_probs=122.7

Q ss_pred             CeEEEEeC-CCeEEEEcC--CCcceeecccccC-----------CeEEEEEccCCCE----EEEEecCCcEEEEeCCCCc
Q psy12697        293 SFLATGSY-DGYARIWTS--DGSLKSTLGQHKG-----------PIFALKWNKRGNY----ILSAGVDKTTIIWDAASGQ  354 (602)
Q Consensus       293 ~~l~~~~~-dg~i~i~~~--~~~~~~~~~~~~~-----------~i~~~~~~~~~~~----l~~~~~dg~i~~wd~~~~~  354 (602)
                      ..+++++. ++.|.-+|.  .|+.+-.......           ....+.++|.+..    ++.++.|+.+..+|..+|+
T Consensus        63 g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG~  142 (599)
T 1w6s_A           63 GKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETGE  142 (599)
T ss_dssp             TEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTCC
T ss_pred             CEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECCCCC
Confidence            35555555 677777776  3554443322111           0123455443444    8888899999999999999


Q ss_pred             eeEEeeeccC----CeeeeeccCCCeEEEeeC------CCeEEEEEcCCCceeeEeccCCCC------------------
Q psy12697        355 CEQQFSFHSA----PALDVDWQSNTSFASCST------DQHIHVCKLHSDKPVKSFEGHTNE------------------  406 (602)
Q Consensus       355 ~~~~~~~~~~----~~~~~~~~~~~~~~~~~~------~~~i~i~d~~~~~~~~~~~~~~~~------------------  406 (602)
                      .+........    .+...-...++.+++++.      ++.|+.+|..+++.+-++......                  
T Consensus       143 ~~W~~~~~~~~~~~~~~ssP~v~~g~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~~g~  222 (599)
T 1w6s_A          143 TVWKVENSDIKVGSTLTIAPYVVKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQ  222 (599)
T ss_dssp             EEEEEECCCGGGTCBCCSCCEEETTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCC
T ss_pred             EEEeecCCCCCccceeecCCEEECCEEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCccccccccccccccccccc
Confidence            9887654321    111111112466776663      799999999999987665532211                  


Q ss_pred             --------------------eEEEEECCCCCEEEEEECC----------------CeEEEEeCCCCeeeEeeccccccEE
Q psy12697        407 --------------------VNAIKWDPQGLLLASCSDD----------------MTLKIWSLDKDNCVHDLQAHNKEIY  450 (602)
Q Consensus       407 --------------------i~~~~~~~~~~~l~~~~~d----------------g~i~iwd~~~~~~~~~~~~~~~~i~  450 (602)
                                          -..++++++..+++.+..+                +.|..+|.++++.+..++.......
T Consensus       223 ~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~w  302 (599)
T 1w6s_A          223 KGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEW  302 (599)
T ss_dssp             TTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSS
T ss_pred             cccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCCccc
Confidence                                0135677777788877765                3788899998888777654321110


Q ss_pred             EEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEc-cCC---CEEEEEeCCCeEEEEeCCCCceeeeec
Q psy12697        451 TIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWN-KRG---NYILSAGVDKTTIIWDAASGQCEQQFS  519 (602)
Q Consensus       451 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s-~~~---~~l~s~~~dg~i~iwd~~~~~~~~~~~  519 (602)
                      .                        +.....++. +... .+|   +.++.++.+|.++++|.++|+.+....
T Consensus       303 d------------------------~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~  350 (599)
T 1w6s_A          303 D------------------------YAGVNVMML-SEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANK  350 (599)
T ss_dssp             C------------------------CCCCCCCEE-EEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             c------------------------ccCCCccEE-EeccccCCcEEEEEEEECCCcEEEEEECCCCCEeeccc
Confidence            0                        000111111 1221 456   467778899999999999999886544

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=98.70  E-value=3.9e-06  Score=87.34  Aligned_cols=271  Identities=13%  Similarity=0.043  Sum_probs=148.2

Q ss_pred             EEEEcC-CCCEEEEeeCCC-----------cEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEeeCCCCCe
Q psy12697        227 ICAWNP-VKDFLASGSGDS-----------TARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSF  294 (602)
Q Consensus       227 ~~~~~~-~~~~l~s~~~dg-----------~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  294 (602)
                      .+++.+ +++.++.|+.+.           .+.+||..+++........             .++.....++++..++++
T Consensus       190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~-------------~~~~~~~~~~~~~~~g~l  256 (656)
T 1k3i_A          190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTV-------------TKHDMFCPGISMDGNGQI  256 (656)
T ss_dssp             EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEE-------------CSCCCSSCEEEECTTSCE
T ss_pred             eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccC-------------CCCCCccccccCCCCCCE
Confidence            556777 788888877543           5788998877543211100             111223445778889999


Q ss_pred             EEEEeC-CCeEEEEcCCCcceeeccc-c-cCCeEEEEEccCCCEEEEEe-cC-----CcEEEEeCCCCceeEEe-----e
Q psy12697        295 LATGSY-DGYARIWTSDGSLKSTLGQ-H-KGPIFALKWNKRGNYILSAG-VD-----KTTIIWDAASGQCEQQF-----S  360 (602)
Q Consensus       295 l~~~~~-dg~i~i~~~~~~~~~~~~~-~-~~~i~~~~~~~~~~~l~~~~-~d-----g~i~~wd~~~~~~~~~~-----~  360 (602)
                      +++|+. ++.+.+||.....-..+.. + ...-.+++..++++.++.|+ .+     ..+.+||..+.+....-     .
T Consensus       257 yv~GG~~~~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p  336 (656)
T 1k3i_A          257 VVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNP  336 (656)
T ss_dssp             EEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGG
T ss_pred             EEeCCCCCCceEEecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeCCCccccc
Confidence            999985 4589999976433322221 1 11123455667899888888 34     57899999887644321     0


Q ss_pred             eccCCeeeeeccCCCeEEEeeCC---------CeEEEEEcCCCceeeEeccCC---------CCeEEEEECC-CCCEEEE
Q psy12697        361 FHSAPALDVDWQSNTSFASCSTD---------QHIHVCKLHSDKPVKSFEGHT---------NEVNAIKWDP-QGLLLAS  421 (602)
Q Consensus       361 ~~~~~~~~~~~~~~~~~~~~~~~---------~~i~i~d~~~~~~~~~~~~~~---------~~i~~~~~~~-~~~~l~~  421 (602)
                      .....-..+....+..++.++.+         ..+..||..+.........+.         ..-.++.|.. ++++++.
T Consensus       337 ~~~~~~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~  416 (656)
T 1k3i_A          337 MLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTF  416 (656)
T ss_dssp             GCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEE
T ss_pred             cccccccceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEE
Confidence            01110011111233445555444         456788887765333222111         1223444443 7788888


Q ss_pred             EECCC-----------eEEEEeCCCCeeeEeeccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEcc
Q psy12697        422 CSDDM-----------TLKIWSLDKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNK  490 (602)
Q Consensus       422 ~~~dg-----------~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~  490 (602)
                      |+.++           .|.+||..+..-......                              .+. ....-.+++..|
T Consensus       417 GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~------------------------------~mp-~~R~~~~~~~l~  465 (656)
T 1k3i_A          417 GGSPDYQDSDATTNAHIITLGEPGTSPNTVFASN------------------------------GLY-FARTFHTSVVLP  465 (656)
T ss_dssp             CCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTT------------------------------CCS-SCCBSCEEEECT
T ss_pred             eCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccC------------------------------CCC-CCcccCCeEECC
Confidence            87542           466666654332211100                              000 011112345667


Q ss_pred             CCCEEEEEeCC-----------CeEEEEeCCCCceeee--ecccCCCeeEeeecCCc-eEEEeeC
Q psy12697        491 RGNYILSAGVD-----------KTTIIWDAASGQCEQQ--FSFHSAPALDVDWQSNT-SFASCST  541 (602)
Q Consensus       491 ~~~~l~s~~~d-----------g~i~iwd~~~~~~~~~--~~~~~~~v~~~~~s~~~-~l~~~~~  541 (602)
                      +|++++.|+.+           ..+.+||..+.+-...  +...........+.||+ .++.|+.
T Consensus       466 ~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~W~~~~~~~~~R~~hs~a~ll~dg~v~v~GG~  530 (656)
T 1k3i_A          466 DGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGG  530 (656)
T ss_dssp             TSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEECCCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred             CCCEEEECCcccCcCcCCCCcccceEEEcCCCCceeecCCCCCccccccHhhcCCCcEEEecCCC
Confidence            99999999865           4689999887653321  21112223345567899 7777764

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.66  E-value=9.6e-05  Score=69.99  Aligned_cols=242  Identities=10%  Similarity=-0.003  Sum_probs=144.7

Q ss_pred             eeEEeeCCCCCeEEEEeCCCeEEEEcCCCcceeecccccCCeEEEEEccCCCEEEEEe-cCCcEEEEeCCCCceeEEeee
Q psy12697        283 VTSLDWNNNGSFLATGSYDGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAG-VDKTTIIWDAASGQCEQQFSF  361 (602)
Q Consensus       283 i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~~wd~~~~~~~~~~~~  361 (602)
                      .+|.+..++. +|+.+. ...|+..++++.....+......+..++|++....|+.+. ..+.|..+++...........
T Consensus        36 ~~C~~~~~~~-~ll~~~-~~~I~~i~~~g~~~~~~~~~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~  113 (349)
T 3v64_C           36 RSCKALGPEP-VLLFAN-RIDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVST  113 (349)
T ss_dssp             SCEEESSSCC-EEEEEC-BSCEEEECTTSCCEEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECS
T ss_pred             CcccccccCc-eeEeec-ccceEEEeCCCCeeEEeecCCCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeC
Confidence            4555555533 444433 3558888888765555444455688999998766666554 567898999876654433332


Q ss_pred             ccCCeeeeecc--CCCeEEEeeCCCeEEEEEcCCCceeeEeccCCCCeEEEEECCCCCEEEEEE-CC-CeEEEEeCCCCe
Q psy12697        362 HSAPALDVDWQ--SNTSFASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCS-DD-MTLKIWSLDKDN  437 (602)
Q Consensus       362 ~~~~~~~~~~~--~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~d-g~i~iwd~~~~~  437 (602)
                      .......+++.  .+..+++-...+.|.+.++........+.........++++|.+..|+... .. +.|..++++...
T Consensus       114 ~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~  193 (349)
T 3v64_C          114 GLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSG  193 (349)
T ss_dssp             SCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS
T ss_pred             CCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCC
Confidence            22334445554  344455666678899999876554444444445688999999666555544 33 677777765322


Q ss_pred             eeEeeccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEE-eCCCeEEEEeCCCCceee
Q psy12697        438 CVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSA-GVDKTTIIWDAASGQCEQ  516 (602)
Q Consensus       438 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~~dg~i~iwd~~~~~~~~  516 (602)
                       ...+..                                 ..-.....++++|++..|..+ ...+.|..+|+.......
T Consensus       194 -~~~~~~---------------------------------~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~  239 (349)
T 3v64_C          194 -RRIIAD---------------------------------THLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKA  239 (349)
T ss_dssp             -CEESCC---------------------------------SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred             -cEEEEE---------------------------------CCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEE
Confidence             111110                                 012345678888766655554 456789999987543333


Q ss_pred             eecccCCCeeEeeecCCceEEEeeCCCcEEEeecCCCCceeeee
Q psy12697        517 QFSFHSAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFE  560 (602)
Q Consensus       517 ~~~~~~~~v~~~~~s~~~~l~~~~~d~~i~iw~~~~~~~~~~~~  560 (602)
                      .+.........+++..+..+++-...+.|..++..+++.+..+.
T Consensus       240 ~~~~~~~~P~giav~~~~ly~td~~~~~V~~~~~~~G~~~~~i~  283 (349)
T 3v64_C          240 VISQGLPHPFAITVFEDSLYWTDWHTKSINSANKFTGKNQEIIR  283 (349)
T ss_dssp             EECSSCSSEEEEEEETTEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred             EEeCCCCCceEEEEECCEEEEecCCCCeEEEEEccCCCccEEec
Confidence            33333344567777433355555667788888866665554443

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=98.62  E-value=0.00081  Score=68.85  Aligned_cols=418  Identities=11%  Similarity=0.007  Sum_probs=211.2

Q ss_pred             ccceeeeecccceeeeeee-ccCCceEEEEECCCCCeEE-EeeCCceEEEEecCCceeEEEeecc-CceEEEEeCCCCCC
Q psy12697        119 RLTLPLWDVERGECLNTLT-RHTEPVYSVAFSPDGKFLA-SGSFDKCVHIWSARTGQLVHSYKGT-GGIFEVCWNSRGTP  195 (602)
Q Consensus       119 ~~~i~vwd~~~~~~~~~l~-~h~~~V~~~~~s~d~~~l~-s~~~d~~v~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~  195 (602)
                      +..|+..|+++......+. ..-..+..++|++++..|. +-..++.|..+++........+... .....+++...+..
T Consensus        14 ~~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlAvD~~~~~   93 (628)
T 4a0p_A           14 RADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMAVDWLGKN   93 (628)
T ss_dssp             TTEEEEEESSCTTCEEECCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTE
T ss_pred             CCcEEEEECCCCCcceEEEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEEEEeCCCE
Confidence            3567777777654333322 2235678999999666555 4456789999988765443333322 23455555543332


Q ss_pred             CCCCCC-ccccccccccCCcceEee-CCCcceEEEEEcCCCCEEEEeeC--CCcEEEEeCCCCCCCCCccceEEEEEEec
Q psy12697        196 PNPPES-MEVDASIEIPQSKATKLI-GHESEVFICAWNPVKDFLASGSG--DSTARIWDMTDSTKKDPKELQIVLRHCIS  271 (602)
Q Consensus       196 ~~~~~~-~~~~~~~~~~~~~~~~l~-~h~~~v~~~~~~~~~~~l~s~~~--dg~i~iw~~~~~~~~~~~~~~~~~~~~~~  271 (602)
                      +..... ................+. ..-.....+++.|....|+.+..  .+.|...+++.....      ...     
T Consensus        94 LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~------~l~-----  162 (628)
T 4a0p_A           94 LYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERT------TLV-----  162 (628)
T ss_dssp             EEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCE------EEE-----
T ss_pred             EEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceE------EEE-----
Confidence            211111 111112222233233333 34456789999996666655542  456666666543311      110     


Q ss_pred             CCCcccCCCCceeEEeeCCCCCeEEEEe-CCCeEEEEcCCCcceeecccccCCeEEEEEccCCCEEEEEecCCcEEEEeC
Q psy12697        272 KGGTEVPSNKDVTSLDWNNNGSFLATGS-YDGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDA  350 (602)
Q Consensus       272 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~  350 (602)
                            ..-.....+++++++..|..+. ..+.|..+++++.....+.........+++.. +..+++-...+.|...|.
T Consensus       163 ------~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~~v~~~~l~~P~glav~~-~~ly~tD~~~~~I~~~dk  235 (628)
T 4a0p_A          163 ------PNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNREVIADDLPHPFGLTQYQ-DYIYWTDWSRRSIERANK  235 (628)
T ss_dssp             ------CSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECCSCEEEEEEET-TEEEEEETTTTEEEEEET
T ss_pred             ------CCCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCceEEeeccCCCceEEEEEC-CEEEEecCCCCEEEEEEC
Confidence                  0124578999999776666654 45789999988755544444444556787764 333444445778888887


Q ss_pred             CCCceeEEeeeccCCee------------------------eeec-cCCCe-----------------------EEEeeC
Q psy12697        351 ASGQCEQQFSFHSAPAL------------------------DVDW-QSNTS-----------------------FASCST  382 (602)
Q Consensus       351 ~~~~~~~~~~~~~~~~~------------------------~~~~-~~~~~-----------------------~~~~~~  382 (602)
                      .+++....+......+.                        .++. .+++.                       ++..+.
T Consensus       236 ~tg~~~~~l~~~~~~p~~i~v~~~~~q~~~n~C~~~ng~C~~~C~~~~~~~~~C~C~~g~~l~~d~~~C~~~~~~Ll~s~  315 (628)
T 4a0p_A          236 TSGQNRTIIQGHLDYVMDILVFHSSRQSGWNECASSNGHCSHLCLAVPVGGFVCGCPAHYSLNADNRTCSAPTTFLLFSQ  315 (628)
T ss_dssp             TTCCSCEEEECSCCSCCEEEEECGGGSCCCCTTTTTGGGCSSEEEEETTTEEEEECSTTCEECTTSSCEECCSSEEEEEE
T ss_pred             CCCCceEEEecCCCCcceeeeeeecccccceEeccCCCCcchhhhcCCCCCeeEEcCCCcEecccCCcCccccceeeeec
Confidence            66654333221100000                        0110 01011                       122222


Q ss_pred             CCeEEEEEcCCCce-eeEecc-CCCCeEEEEECCCCCEEEEEE-CCCeEEEEeCCCCeeeEeeccccccEEEEEECCCCC
Q psy12697        383 DQHIHVCKLHSDKP-VKSFEG-HTNEVNAIKWDPQGLLLASCS-DDMTLKIWSLDKDNCVHDLQAHNKEIYTIKWSPTGP  459 (602)
Q Consensus       383 ~~~i~i~d~~~~~~-~~~~~~-~~~~i~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~  459 (602)
                      ...|+-..+..... ...+.. .-..+..++|++....|+.+. ..+.|+.+++........+....             
T Consensus       316 ~~~i~~i~l~~~~~~~~~l~~~~~~~~~~ld~d~~~~~iy~sD~~~~~I~r~~~~g~~~~~v~~~~~-------------  382 (628)
T 4a0p_A          316 KSAINRMVIDEQQSPDIILPIHSLRNVRAIDYDPLDKQLYWIDSRQNMIRKAQEDGSQGFTVVVSSV-------------  382 (628)
T ss_dssp             TTEEEEECCCTTCCCCEECCCTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC----------------
T ss_pred             cceEEEEecccccCceEEEEehhcCCceEEEEecCCCeEEEEecCcceEEEEEcCCCCceEEEEccc-------------
Confidence            23333333322110 011111 123467788887655555444 34566666654322111111000             


Q ss_pred             CCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEE-EEEeCCCeEEEEeCCCCceeeee-cccCCCeeEeeecC-CceE
Q psy12697        460 ETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYI-LSAGVDKTTIIWDAASGQCEQQF-SFHSAPALDVDWQS-NTSF  536 (602)
Q Consensus       460 ~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l-~s~~~dg~i~iwd~~~~~~~~~~-~~~~~~v~~~~~s~-~~~l  536 (602)
                                     ........+..+++...++.| .+-+..+.|.+.++. |+....+ ........++++.| .|.|
T Consensus       383 ---------------~~~~~~~~p~glAvD~~~~nLY~td~~~~~I~v~~~~-G~~~~~l~~~~l~~Pr~iavdp~~g~l  446 (628)
T 4a0p_A          383 ---------------PSQNLEIQPYDLSIDIYSRYIYWTCEATNVINVTRLD-GRSVGVVLKGEQDRPRAVVVNPEKGYM  446 (628)
T ss_dssp             --------------------CCCEEEEEEETTTTEEEEEETTTTEEEEEETT-SCEEEEEEECTTCCEEEEEEETTTTEE
T ss_pred             ---------------ccccccCCcceEEeeccCCeEEEEcCCCCEEEEEECC-CCeEEEEEeCCCCceeeEEEecCCCeE
Confidence                           000012346678888776544 455567889999986 5444333 23345688999999 5644


Q ss_pred             EEee-CCC--cEEEeecCCCCceeeeecccccceEEEEecCCcEEEEEECCCCCeEEEecc
Q psy12697        537 ASCS-TDQ--HIHVCKLHSDKPVKSFEGHTTGQLVHSYKGTGGIFEVCWNSRGDKVGASAS  594 (602)
Q Consensus       537 ~~~~-~d~--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~  594 (602)
                      .... ...  .|...+++.... ..+-..          .-.....|+++++++.|..+..
T Consensus       447 y~tD~g~~~~~I~r~~~dG~~~-~~l~~~----------~l~~P~gla~D~~~~~LYw~D~  496 (628)
T 4a0p_A          447 YFTNLQERSPKIERAALDGTER-EVLFFS----------GLSKPIALALDSRLGKLFWADS  496 (628)
T ss_dssp             EEEEEETTEEEEEEEETTSCSC-EEEECS----------SCSCEEEEEEETTTTEEEEEET
T ss_pred             EEeecCCCCCeEEEEeCCCCCc-EEEEec----------cCCCccEEEEeCCCCEEEEEeC
Confidence            3333 222  455555543222 111110          0133577888887766666544

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.61  E-value=6.5e-05  Score=69.90  Aligned_cols=233  Identities=7%  Similarity=-0.026  Sum_probs=136.7

Q ss_pred             CCeEEEEEccCCCEEEEEecCCcEEEEeCCCCceeEEeeeccCCeeeeeccCCCeEEEeeCC--C-eEEEEEcCCCceee
Q psy12697        322 GPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTSFASCSTD--Q-HIHVCKLHSDKPVK  398 (602)
Q Consensus       322 ~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~i~i~d~~~~~~~~  398 (602)
                      .....++|+++++.+++-..++.|..||.... ....+. ....+..+++.+++.++++...  + .|..++..+++...
T Consensus        32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~-~~~~~~-~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~  109 (306)
T 2p4o_A           32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGN-QQIHAT-VEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVET  109 (306)
T ss_dssp             CCEEEEEECTTSCEEEEETTTTEEEEECTTCC-EEEEEE-CSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEE
T ss_pred             CCcceEEECCCCCEEEEeCCCCeEEEECCCCc-eEEEEe-CCCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEEE
Confidence            45678999999986666667889999997653 333332 2345778888888777666532  2 47777877776433


Q ss_pred             Eecc-CCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCee-eEeeccccccEEEEEECCCCCCCCCCCcceeeeeeecc
Q psy12697        399 SFEG-HTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNC-VHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTL  476 (602)
Q Consensus       399 ~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  476 (602)
                      .... .......++..+++..+++-..++.|..+|...++. +.......        .+.                 ..
T Consensus       110 ~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~--------~~~-----------------~~  164 (306)
T 2p4o_A          110 LLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPML--------ARS-----------------NS  164 (306)
T ss_dssp             EEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGG--------SCS-----------------ST
T ss_pred             EEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCcc--------ccc-----------------cc
Confidence            2221 122345566666655555544688888888765421 11111000        000                 00


Q ss_pred             CCccCCeEEEEEccCCCEEEEE-eCCCeEEEEeCCC-Cce--eeeecccCCCeeEeeecCCc-eEEEeeCCCcEEEeecC
Q psy12697        477 GQHKGPIFALKWNKRGNYILSA-GVDKTTIIWDAAS-GQC--EQQFSFHSAPALDVDWQSNT-SFASCSTDQHIHVCKLH  551 (602)
Q Consensus       477 ~~~~~~v~~i~~s~~~~~l~s~-~~dg~i~iwd~~~-~~~--~~~~~~~~~~v~~~~~s~~~-~l~~~~~d~~i~iw~~~  551 (602)
                      ...-.....+  +|++++|..+ ...+.|..+|+.. ++.  ...+. .......+++.++| .+++....+.|.+++..
T Consensus       165 ~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~-~~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~  241 (306)
T 2p4o_A          165 ESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFV-EQTNIDDFAFDVEGNLYGATHIYNSVVRIAPD  241 (306)
T ss_dssp             TCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEE-ESCCCSSEEEBTTCCEEEECBTTCCEEEECTT
T ss_pred             cCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEe-ccCCCCCeEECCCCCEEEEeCCCCeEEEECCC
Confidence            0011123344  7888766554 4568899999874 332  11221 11345678999999 66666667889999854


Q ss_pred             CCCceeeeecccccceEEEEec-CCcEEEEEEC---CCCCeEEEeccC
Q psy12697        552 SDKPVKSFEGHTTGQLVHSYKG-TGGIFEVCWN---SRGDKVGASASD  595 (602)
Q Consensus       552 ~~~~~~~~~~~~~~~~~~~~~~-~~~i~~l~~s---pdg~~l~~~~~d  595 (602)
                       ++.... .         .+.. -....+++|.   ||++.|++++..
T Consensus       242 -G~~~~~-~---------~~~~~~~~p~~~a~~g~~~d~~~LyVt~~~  278 (306)
T 2p4o_A          242 -RSTTII-A---------QAEQGVIGSTAVAFGQTEGDCTAIYVVTNG  278 (306)
T ss_dssp             -CCEEEE-E---------CGGGTCTTEEEEEECCSTTTTTEEEEEECT
T ss_pred             -CCEEEE-e---------ecccccCCceEEEEecccCCCCEEEEECCC
Confidence             332111 0         0111 1457899999   898888877654

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=98.61  E-value=0.0004  Score=65.06  Aligned_cols=267  Identities=9%  Similarity=0.049  Sum_probs=141.0

Q ss_pred             CceeEEeeCCCCCeEEEEeCCCeEEEEcCCCcceeecc----cccCCeEEEEEccCCCEEEEEecCCcEEEEeCCCCcee
Q psy12697        281 KDVTSLDWNNNGSFLATGSYDGYARIWTSDGSLKSTLG----QHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCE  356 (602)
Q Consensus       281 ~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~----~~~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~  356 (602)
                      ..+.++.+.+++..+++| ..|.|....-.++.-....    .....+..+.+.+ + .++.++..+.|.. ....++.-
T Consensus        36 ~~~~~v~~~~~~~~~~~G-~~g~i~~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~-~-~~~~~g~~g~i~~-S~DgG~tW  111 (327)
T 2xbg_A           36 ATILDMSFIDRHHGWLVG-VNATLMETRDGGQTWEPRTLVLDHSDYRFNSVSFQG-N-EGWIVGEPPIMLH-TTDGGQSW  111 (327)
T ss_dssp             SCEEEEEESSSSCEEEEE-TTTEEEEESSTTSSCEECCCCCSCCCCEEEEEEEET-T-EEEEEEETTEEEE-ESSTTSSC
T ss_pred             CcEEEEEECCCCcEEEEc-CCCeEEEeCCCCCCCeECCCCCCCCCccEEEEEecC-C-eEEEEECCCeEEE-ECCCCCCc
Confidence            568899998877777754 5676543322233222221    1244688999976 3 3444556664443 22223322


Q ss_pred             EEeee---ccCCeeeeeccCCCeEEEeeCCCeEEEEEcCCCceeeE-eccCCCCeEEEEECCCCCEEEEEECCCeEEEEe
Q psy12697        357 QQFSF---HSAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKS-FEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWS  432 (602)
Q Consensus       357 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~-~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd  432 (602)
                      .....   ....+..+.+.+++.+++++.++.|+. ....++.-.. .......+..+++.|++.+++.+...+..+-+|
T Consensus       112 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~v~~-S~DgG~tW~~~~~~~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d  190 (327)
T 2xbg_A          112 SQIPLDPKLPGSPRLIKALGNGSAEMITNVGAIYR-TKDSGKNWQALVQEAIGVMRNLNRSPSGEYVAVSSRGSFYSTWE  190 (327)
T ss_dssp             EECCCCTTCSSCEEEEEEEETTEEEEEETTCCEEE-ESSTTSSEEEEECSCCCCEEEEEECTTSCEEEEETTSSEEEEEC
T ss_pred             eECccccCCCCCeEEEEEECCCCEEEEeCCccEEE-EcCCCCCCEEeecCCCcceEEEEEcCCCcEEEEECCCcEEEEeC
Confidence            22211   123455666656666666666665433 2222332222 233455788999999988887765443333333


Q ss_pred             C--CCCeeeEeeccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCCCeEEEEeCC
Q psy12697        433 L--DKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAA  510 (602)
Q Consensus       433 ~--~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~~  510 (602)
                      -  .+.+.+.  ..                                  ....+..+.++++++++ .++.+|.+++++..
T Consensus       191 ~gG~tW~~~~--~~----------------------------------~~~~~~~~~~~~~g~~~-~~~~~G~~~~s~~D  233 (327)
T 2xbg_A          191 PGQTAWEPHN--RT----------------------------------TSRRLHNMGFTPDGRLW-MIVNGGKIAFSDPD  233 (327)
T ss_dssp             TTCSSCEEEE--CC----------------------------------SSSCEEEEEECTTSCEE-EEETTTEEEEEETT
T ss_pred             CCCCceeECC--CC----------------------------------CCCccceeEECCCCCEE-EEeCCceEEEecCC
Confidence            2  1112111  01                                  22345666677777655 44567888777433


Q ss_pred             CCceeeeecc----cCCCeeEeeecCCceEEEeeCCCcEEEeecCCCCceeeeecccccceEEEEecCCcEEEEEECCCC
Q psy12697        511 SGQCEQQFSF----HSAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEGHTTGQLVHSYKGTGGIFEVCWNSRG  586 (602)
Q Consensus       511 ~~~~~~~~~~----~~~~v~~~~~s~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg  586 (602)
                      .++.-..+..    +...+.++.+.+++.++.++.++.|. +..+.++.-..+....        .....+.++.|.+++
T Consensus       234 ~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~~g~i~-~S~DgG~tW~~~~~~~--------~~~~~~~~v~~~~~~  304 (327)
T 2xbg_A          234 NSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAGGAGALL-CSQDGGQTWQQDVDVK--------KVPSNFYKILFFSPD  304 (327)
T ss_dssp             EEEEECCCBCTTSSCCSCEEEEEESSSSCEEEEESTTCEE-EESSTTSSCEECGGGT--------TSSSCCCEEEEEETT
T ss_pred             CCCeeEeccCCcccCCcceEEEEecCCCEEEEEeCCCeEE-EeCCCCcccEEcCccC--------CCCCCeEEEEEECCC
Confidence            3433222221    22358889999888555555677763 4444443222221110        012457788887555


Q ss_pred             CeEEEeccCCeEE
Q psy12697        587 DKVGASASDGSVF  599 (602)
Q Consensus       587 ~~l~~~~~dg~v~  599 (602)
                      . +++++.+|.|.
T Consensus       305 ~-~~~~G~~G~i~  316 (327)
T 2xbg_A          305 Q-GFILGQKGILL  316 (327)
T ss_dssp             E-EEEECSTTEEE
T ss_pred             c-eEEEcCCceEE
Confidence            4 66667777664

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.58  E-value=0.00014  Score=69.98  Aligned_cols=241  Identities=10%  Similarity=-0.026  Sum_probs=144.4

Q ss_pred             eEEeeCCCCCeEEEEeCCCeEEEEcCCCcceeecccccCCeEEEEEccCCCEEEEE-ecCCcEEEEeCCCCceeEEeeec
Q psy12697        284 TSLDWNNNGSFLATGSYDGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSA-GVDKTTIIWDAASGQCEQQFSFH  362 (602)
Q Consensus       284 ~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~~wd~~~~~~~~~~~~~  362 (602)
                      +|.+..+. .+|+.+ ....|+.+++.+.....+......+..++|++.+..|+.+ ...+.|..+++........+...
T Consensus        80 ~C~~~~~~-~~l~~~-~~~~I~~i~~~~~~~~~~~~~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~  157 (386)
T 3v65_B           80 SCKALGPE-PVLLFA-NRIDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTG  157 (386)
T ss_dssp             CEEECSSC-CEEEEE-CBSCEEEECTTSCCCEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSS
T ss_pred             eECCcccc-ceeEee-cCccceeeccCCCcEEEEecCCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCC
Confidence            34444453 344443 3456888888866555544445568899999866666654 45678999998766544333322


Q ss_pred             cCCeeeeeccC--CCeEEEeeCCCeEEEEEcCCCceeeEeccCCCCeEEEEECCCCCEEEEEEC-C-CeEEEEeCCCCee
Q psy12697        363 SAPALDVDWQS--NTSFASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSD-D-MTLKIWSLDKDNC  438 (602)
Q Consensus       363 ~~~~~~~~~~~--~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d-g~i~iwd~~~~~~  438 (602)
                      ......+++.+  +..+++-...+.|.+.++........+.........++++|.+..|+.... . +.|..++++....
T Consensus       158 ~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~  237 (386)
T 3v65_B          158 LESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGR  237 (386)
T ss_dssp             CSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC
T ss_pred             CCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCc
Confidence            23344455543  344555566778888888765444444444466899999997766665543 3 5677777653221


Q ss_pred             eEeeccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEE-eCCCeEEEEeCCCCceeee
Q psy12697        439 VHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSA-GVDKTTIIWDAASGQCEQQ  517 (602)
Q Consensus       439 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~~dg~i~iwd~~~~~~~~~  517 (602)
                      ......                                  .-.....++++|++..|..+ ...+.|..+|+........
T Consensus       238 ~~~~~~----------------------------------~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~  283 (386)
T 3v65_B          238 RIIADT----------------------------------HLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAV  283 (386)
T ss_dssp             EEEECS----------------------------------SCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEE
T ss_pred             EEEEEC----------------------------------CCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEE
Confidence            111110                                  12235678888766655554 4567899999875433333


Q ss_pred             ecccCCCeeEeeecCCceEEEeeCCCcEEEeecCCCCceeeee
Q psy12697        518 FSFHSAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFE  560 (602)
Q Consensus       518 ~~~~~~~v~~~~~s~~~~l~~~~~d~~i~iw~~~~~~~~~~~~  560 (602)
                      +.........+++..+..+++-...+.|..++..+++.+..+.
T Consensus       284 ~~~~~~~P~giav~~~~ly~td~~~~~V~~~~~~~G~~~~~i~  326 (386)
T 3v65_B          284 ISQGLPHPFAITVFEDSLYWTDWHTKSINSANKFTGKNQEIIR  326 (386)
T ss_dssp             ECSSCSSEEEEEEETTEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred             EECCCCCceEEEEECCEEEEeeCCCCeEEEEECCCCcceEEEc
Confidence            3333345667777443355666677888888866666555544

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=98.58  E-value=3.8e-06  Score=87.43  Aligned_cols=239  Identities=10%  Similarity=0.087  Sum_probs=132.9

Q ss_pred             EEEECC-CCCeEEEeeCCc-----------eEEEEecCCceeEEEeeccCceEEEEeCCCCCCCCCCCCccccccccccC
Q psy12697        145 SVAFSP-DGKFLASGSFDK-----------CVHIWSARTGQLVHSYKGTGGIFEVCWNSRGTPPNPPESMEVDASIEIPQ  212 (602)
Q Consensus       145 ~~~~s~-d~~~l~s~~~d~-----------~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  212 (602)
                      ++++.| ++++++.|+.+.           .+.+||..+++....                                   
T Consensus       190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~-----------------------------------  234 (656)
T 1k3i_A          190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDR-----------------------------------  234 (656)
T ss_dssp             EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCC-----------------------------------
T ss_pred             eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeC-----------------------------------
Confidence            566777 899999987543           578888877653211                                   


Q ss_pred             CcceEe-eCCCcceEEEEEcCCCCEEEEeeC-CCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEeeCC
Q psy12697        213 SKATKL-IGHESEVFICAWNPVKDFLASGSG-DSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNN  290 (602)
Q Consensus       213 ~~~~~l-~~h~~~v~~~~~~~~~~~l~s~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  290 (602)
                         ..+ ..+.....++++.+++++++.|+. +..+.+||..+..-....               ..+....-.+++..+
T Consensus       235 ---~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~---------------~~~~~R~~~s~~~~~  296 (656)
T 1k3i_A          235 ---TVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGP---------------DMQVARGYQSSATMS  296 (656)
T ss_dssp             ---EEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECC---------------CCSSCCSSCEEEECT
T ss_pred             ---cccCCCCCCccccccCCCCCCEEEeCCCCCCceEEecCcCCceeECC---------------CCCccccccceEEec
Confidence               011 112223345677888999999884 567999998765321100               011122234556667


Q ss_pred             CCCeEEEEe-CC-----CeEEEEcCCCcceeeccc-----ccCCeEEEEEccCCCEEEEEecCC---------cEEEEeC
Q psy12697        291 NGSFLATGS-YD-----GYARIWTSDGSLKSTLGQ-----HKGPIFALKWNKRGNYILSAGVDK---------TTIIWDA  350 (602)
Q Consensus       291 ~~~~l~~~~-~d-----g~i~i~~~~~~~~~~~~~-----~~~~i~~~~~~~~~~~l~~~~~dg---------~i~~wd~  350 (602)
                      ++++++.|+ .+     ..+.+||........+..     ....-....+..++..++.++.+|         .+..||.
T Consensus       297 dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~  376 (656)
T 1k3i_A          297 DGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYT  376 (656)
T ss_dssp             TSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEEC
T ss_pred             CCeEEEEeCcccCCcccccceEeCCCCCcceeCCCccccccccccccceeecCCceEEEECCCCcEEEecCccceeeeec
Confidence            899999998 34     468999986544333210     000000011223445555554443         5678888


Q ss_pred             CCCceeEEeeeccC---------Ceeeeec--cCCCeEEEeeCCC-----------eEEEEEcCCCceeeEe--ccCCCC
Q psy12697        351 ASGQCEQQFSFHSA---------PALDVDW--QSNTSFASCSTDQ-----------HIHVCKLHSDKPVKSF--EGHTNE  406 (602)
Q Consensus       351 ~~~~~~~~~~~~~~---------~~~~~~~--~~~~~~~~~~~~~-----------~i~i~d~~~~~~~~~~--~~~~~~  406 (602)
                      .+............         .-.++.+  ..+..+++|+.++           .+.+||..+.+-....  ..+...
T Consensus       377 ~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R  456 (656)
T 1k3i_A          377 SGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFAR  456 (656)
T ss_dssp             STTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCC
T ss_pred             CCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCc
Confidence            87764433322211         1122222  2345566666432           6778887776543322  222222


Q ss_pred             -eEEEEECCCCCEEEEEECC-----------CeEEEEeCCCC
Q psy12697        407 -VNAIKWDPQGLLLASCSDD-----------MTLKIWSLDKD  436 (602)
Q Consensus       407 -i~~~~~~~~~~~l~~~~~d-----------g~i~iwd~~~~  436 (602)
                       -.+++..|++++++.|+.+           ..+.+||..+.
T Consensus       457 ~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~  498 (656)
T 1k3i_A          457 TFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQD  498 (656)
T ss_dssp             BSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGT
T ss_pred             ccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCCC
Confidence             2345677899999999864           35778887654

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.56  E-value=4.5e-05  Score=80.58  Aligned_cols=191  Identities=9%  Similarity=0.028  Sum_probs=114.2

Q ss_pred             ceEEEEEc-CCCCEEEEeeC-C----CcEEEEeCCCC-CCCCCccceEEEEEEecCCCcccCCCCceeEEeeCCCCCeEE
Q psy12697        224 EVFICAWN-PVKDFLASGSG-D----STARIWDMTDS-TKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFLA  296 (602)
Q Consensus       224 ~v~~~~~~-~~~~~l~s~~~-d----g~i~iw~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~  296 (602)
                      .+...+|| |||++|+.+.. +    ..|+++|+.++ +.... .+    .             .....++|+|||+.|+
T Consensus       175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~-~~----~-------------~~~~~~~WspDg~~l~  236 (751)
T 2xe4_A          175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIAD-KV----S-------------GTNGEIVWGPDHTSLF  236 (751)
T ss_dssp             EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCC-CE----E-------------EECSCCEECSSTTEEE
T ss_pred             EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCc-cc----c-------------CceeeEEEecCCCEEE
Confidence            67889999 99998886543 2    25999999887 52210 00    0             1135788999999888


Q ss_pred             EEeCC-----CeEEEEcCCCcc---eeecc-cccCCeEEEEEccCCCEEEEEec---CCcEEEEeCCCCc-ee--EEe-e
Q psy12697        297 TGSYD-----GYARIWTSDGSL---KSTLG-QHKGPIFALKWNKRGNYILSAGV---DKTTIIWDAASGQ-CE--QQF-S  360 (602)
Q Consensus       297 ~~~~d-----g~i~i~~~~~~~---~~~~~-~~~~~i~~~~~~~~~~~l~~~~~---dg~i~~wd~~~~~-~~--~~~-~  360 (602)
                      ....+     ..|.++++.+..   ...+. ........+.|+|||++|+..+.   ...|.++|+.++. ..  ..+ .
T Consensus       237 y~~~d~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~  316 (751)
T 2xe4_A          237 YVTKDETLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRP  316 (751)
T ss_dssp             EEEECTTCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSC
T ss_pred             EEEECCCCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeec
Confidence            77765     257778876432   12222 22345678899999999886653   3468888988752 12  222 2


Q ss_pred             eccCCeeeeeccCCCeEEEeeCC-----CeEEEEEcCCCceeeE-eccCCC--CeEEEEECCCCCEEEEEECCCeE--EE
Q psy12697        361 FHSAPALDVDWQSNTSFASCSTD-----QHIHVCKLHSDKPVKS-FEGHTN--EVNAIKWDPQGLLLASCSDDMTL--KI  430 (602)
Q Consensus       361 ~~~~~~~~~~~~~~~~~~~~~~~-----~~i~i~d~~~~~~~~~-~~~~~~--~i~~~~~~~~~~~l~~~~~dg~i--~i  430 (602)
                      ........+.|..++.++..+..     ..|..+++.+...... +..+..  .+..+.+. .+.++++...++..  .+
T Consensus       317 ~~~~~~~s~~~~~g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~-~~~lv~~~~~~g~~~l~~  395 (751)
T 2xe4_A          317 REKGVRYDVQMHGTSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVR-SNYLVVAGRRAGLTRIWT  395 (751)
T ss_dssp             CCTTCCEEEEEETTTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEEC-SSEEEEEEEETTEEEEEE
T ss_pred             CCCCceEEEeeeeCCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEE-CCEEEEEEEeCCEEEEEE
Confidence            23344455555556666555433     3677788765322222 233333  35556665 33455666677754  45


Q ss_pred             EeC
Q psy12697        431 WSL  433 (602)
Q Consensus       431 wd~  433 (602)
                      +++
T Consensus       396 ~dl  398 (751)
T 2xe4_A          396 MMA  398 (751)
T ss_dssp             EEC
T ss_pred             Eec
Confidence            554

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.52  E-value=9.4e-05  Score=65.51  Aligned_cols=208  Identities=11%  Similarity=0.158  Sum_probs=131.5

Q ss_pred             ecccccCCeEEEEEccCCCEEEE-EecCCcEEEEeCCCCceeEEeeec-cCCeeeeeccCCCeEEEee-CCCeEEEEEcC
Q psy12697        316 TLGQHKGPIFALKWNKRGNYILS-AGVDKTTIIWDAASGQCEQQFSFH-SAPALDVDWQSNTSFASCS-TDQHIHVCKLH  392 (602)
Q Consensus       316 ~~~~~~~~i~~~~~~~~~~~l~~-~~~dg~i~~wd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~i~i~d~~  392 (602)
                      .+.+-...+..++|+|+++.|++ ...++.|...|.. ++.++.+... ....-.+++.+++.+++.. .++.+.++++.
T Consensus        21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~   99 (255)
T 3qqz_A           21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLT   99 (255)
T ss_dssp             ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEEC
T ss_pred             ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcC
Confidence            34455567999999998776654 6678889999988 8888877543 2467778888888876654 56789999876


Q ss_pred             CCce---eeEec------cCCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeeeEeeccccccEEEEEECCCCCCCCC
Q psy12697        393 SDKP---VKSFE------GHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHDLQAHNKEIYTIKWSPTGPETSN  463 (602)
Q Consensus       393 ~~~~---~~~~~------~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~  463 (602)
                      ....   +....      ..+.....++|+|.++.|.++.+.....+|.++ +.     . +...+. +...+.      
T Consensus       100 ~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~-g~-----~-~~~~l~-i~~~~~------  165 (255)
T 3qqz_A          100 PNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVN-GL-----L-SSNELH-ISKDKA------  165 (255)
T ss_dssp             TTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEE-ST-----T-CSSCCE-EEECHH------
T ss_pred             CCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEc-cc-----c-cCCcee-eecchh------
Confidence            5542   12221      123457899999999888887766555566554 10     0 000000 000000      


Q ss_pred             CCcceeeeeeeccCCccCCeEEEEEccC-CCEEEEEeCCCeEEEEeCCCCceeeeecccC---------CCeeEeeecCC
Q psy12697        464 PNMSLIFILKSTLGQHKGPIFALKWNKR-GNYILSAGVDKTTIIWDAASGQCEQQFSFHS---------APALDVDWQSN  533 (602)
Q Consensus       464 ~~~~~~~~~~~~~~~~~~~v~~i~~s~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~---------~~v~~~~~s~~  533 (602)
                              +  .-..+...+.++++.|. +++++.......|.++|.. |+.+..+.-..         ...-.|+|.++
T Consensus       166 --------~--~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~  234 (255)
T 3qqz_A          166 --------L--QRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDAS  234 (255)
T ss_dssp             --------H--HHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECTT
T ss_pred             --------h--ccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECCC
Confidence                    0  00012234678888884 5566677777889999966 65555444321         24678999999


Q ss_pred             ceEEEeeCCCcEEEee
Q psy12697        534 TSFASCSTDQHIHVCK  549 (602)
Q Consensus       534 ~~l~~~~~d~~i~iw~  549 (602)
                      |.|...+..+.++++.
T Consensus       235 G~lyIvsE~n~~y~f~  250 (255)
T 3qqz_A          235 GNIYIVSEPNRFYRFT  250 (255)
T ss_dssp             CCEEEEETTTEEEEEE
T ss_pred             CCEEEEcCCceEEEEE
Confidence            9555557777666665

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=98.51  E-value=0.00048  Score=64.18  Aligned_cols=223  Identities=12%  Similarity=0.003  Sum_probs=131.6

Q ss_pred             CeEEEEcCCCcceeecccccCCeEEEEEccCCCEEEEEe-cCCcEEEEeCCC----CceeEEeeeccCCeeeeeccC--C
Q psy12697        302 GYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAG-VDKTTIIWDAAS----GQCEQQFSFHSAPALDVDWQS--N  374 (602)
Q Consensus       302 g~i~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~~wd~~~----~~~~~~~~~~~~~~~~~~~~~--~  374 (602)
                      ..|+..++++.....+.........+.|++.+..|+.+. ..+.|..+++..    ......+.........+++.+  +
T Consensus        10 ~~I~~i~~~~~~~~~~~~~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~   89 (316)
T 1ijq_A           10 HEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHS   89 (316)
T ss_dssp             SSEEEEETTSCCCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTT
T ss_pred             CeEEEEECCCcceEehhcCCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCC
Confidence            457888877654433333455678999998766666554 568899999875    222222222222345555543  3


Q ss_pred             CeEEEeeCCCeEEEEEcCCCceeeEeccCCCCeEEEEECCCCCEEEEEECC--CeEEEEeCCCCeeeEeeccccccEEEE
Q psy12697        375 TSFASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDD--MTLKIWSLDKDNCVHDLQAHNKEIYTI  452 (602)
Q Consensus       375 ~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d--g~i~iwd~~~~~~~~~~~~~~~~i~~~  452 (602)
                      ..+++-...+.|.++++........+.........++++|.+..|+.+...  +.|...+++. .....+..        
T Consensus        90 ~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG-~~~~~~~~--------  160 (316)
T 1ijq_A           90 NIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG-VDIYSLVT--------  160 (316)
T ss_dssp             EEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTS-CCEEEEEC--------
T ss_pred             eEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCC-CCeEEEEE--------
Confidence            445555677899999987654433333344568899999976666555543  6777777643 22211110        


Q ss_pred             EECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEe-CCCeEEEEeCCCCceeeeecc---cCCCeeEe
Q psy12697        453 KWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAG-VDKTTIIWDAASGQCEQQFSF---HSAPALDV  528 (602)
Q Consensus       453 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~---~~~~v~~~  528 (602)
                                               ..-.....+++++++..|..+. ..+.|..+|+... ....+..   .-.....+
T Consensus       161 -------------------------~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~-~~~~~~~~~~~~~~P~gi  214 (316)
T 1ijq_A          161 -------------------------ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGG-NRKTILEDEKRLAHPFSL  214 (316)
T ss_dssp             -------------------------SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC-SCEEEEECTTTTSSEEEE
T ss_pred             -------------------------CCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCC-ceEEEeecCCccCCcEEE
Confidence                                     0123456788888766665554 5678999998743 2333321   12335677


Q ss_pred             eecCCceEEEeeCCCcEEEeecCCCCceeee
Q psy12697        529 DWQSNTSFASCSTDQHIHVCKLHSDKPVKSF  559 (602)
Q Consensus       529 ~~s~~~~l~~~~~d~~i~iw~~~~~~~~~~~  559 (602)
                      ++..+..+++-...+.|..++..+++.+..+
T Consensus       215 av~~~~ly~~d~~~~~V~~~~~~~g~~~~~i  245 (316)
T 1ijq_A          215 AVFEDKVFWTDIINEAIFSANRLTGSDVNLL  245 (316)
T ss_dssp             EEETTEEEEEETTTTEEEEEETTTCCCCEEE
T ss_pred             EEECCEEEEEECCCCeEEEEeCCCCcceEEE
Confidence            7754335556667788999988777655544

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.49  E-value=1.6e-05  Score=84.03  Aligned_cols=240  Identities=10%  Similarity=-0.013  Sum_probs=131.2

Q ss_pred             ceEEEEEC-CCCCeEEEeeC-C----ceEEEEecCCc-eeEEEeeccCceEEEEeCCCCCCCCCCCCccccccccccCCc
Q psy12697        142 PVYSVAFS-PDGKFLASGSF-D----KCVHIWSARTG-QLVHSYKGTGGIFEVCWNSRGTPPNPPESMEVDASIEIPQSK  214 (602)
Q Consensus       142 ~V~~~~~s-~d~~~l~s~~~-d----~~v~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  214 (602)
                      .+...+|| |||++||-+.. +    .+|.++|+.+| +.+..                                     
T Consensus       175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~-------------------------------------  217 (751)
T 2xe4_A          175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIAD-------------------------------------  217 (751)
T ss_dssp             EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCC-------------------------------------
T ss_pred             EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCc-------------------------------------
Confidence            68889999 99999886542 2    35999999988 53210                                     


Q ss_pred             ceEeeCCCcceEEEEEcCCCCEEEEeeCC-----CcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEeeC
Q psy12697        215 ATKLIGHESEVFICAWNPVKDFLASGSGD-----STARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWN  289 (602)
Q Consensus       215 ~~~l~~h~~~v~~~~~~~~~~~l~s~~~d-----g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  289 (602)
                        .+.   .....++|+||++.|+....|     ..|.++++.++....    .....         .+.......+.|+
T Consensus       218 --~~~---~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~~~lgt~~~~~----~lv~~---------~~~~~~~~~~~~S  279 (751)
T 2xe4_A          218 --KVS---GTNGEIVWGPDHTSLFYVTKDETLRENKVWRHVMGKLQSED----VCLYE---------EHNPLFSAFMYKA  279 (751)
T ss_dssp             --CEE---EECSCCEECSSTTEEEEEEECTTCCEEEEEEEETTSCGGGC----EEEEE---------CCCTTCEEEEEEC
T ss_pred             --ccc---CceeeEEEecCCCEEEEEEECCCCCCCEEEEEECCCCchhc----EEEEe---------cCCCceEEEEEEC
Confidence              000   012357899999888877665     257777776543211    00100         0112335678999


Q ss_pred             CCCCeEEEEeC---CCeEEEEcCCCc---c--eeecccccCCeEEEEEccCCCEEE-EEecC----CcEEEEeCCCC-ce
Q psy12697        290 NNGSFLATGSY---DGYARIWTSDGS---L--KSTLGQHKGPIFALKWNKRGNYIL-SAGVD----KTTIIWDAASG-QC  355 (602)
Q Consensus       290 ~~~~~l~~~~~---dg~i~i~~~~~~---~--~~~~~~~~~~i~~~~~~~~~~~l~-~~~~d----g~i~~wd~~~~-~~  355 (602)
                      |||++|+....   ...|.++|+.+.   .  .............+.|+. ++.|+ ....+    ..|..+|+.++ ..
T Consensus       280 pDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~~-g~~l~~~t~~~~a~~~~L~~~d~~~~~~~  358 (751)
T 2xe4_A          280 ADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQMHG-TSHLVILTNEGGAVNHKLLIAPRGQPSDW  358 (751)
T ss_dssp             TTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEEET-TTEEEEEECTTTCTTCEEEEEETTSTTCC
T ss_pred             CCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEeeee-CCEEEEEeCCCCCCCcEEEEEcCCCcccc
Confidence            99999887663   346888887643   2  222333445555665544 55554 44333    25667777652 22


Q ss_pred             eE-Eeeecc-CCeeeeeccCCCeEEEeeCCCe--EEEEEc-------CCCceeeEeccCC-CCeEEEEE----CCCCC-E
Q psy12697        356 EQ-QFSFHS-APALDVDWQSNTSFASCSTDQH--IHVCKL-------HSDKPVKSFEGHT-NEVNAIKW----DPQGL-L  418 (602)
Q Consensus       356 ~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--i~i~d~-------~~~~~~~~~~~~~-~~i~~~~~----~~~~~-~  418 (602)
                      .. .+.... ..+..+.+..+..+++...++.  |.++++       ..++....+.... ..+..+.+    ++++. +
T Consensus       359 ~~~li~~~~~~~l~~~~~~~~~lv~~~~~~g~~~l~~~dl~~~~~~~~~g~~~~~l~l~~~~~~~~~~~~~~~~~~~~~l  438 (751)
T 2xe4_A          359 SHVLVDHSEDVFMESIAVRSNYLVVAGRRAGLTRIWTMMADSQDGVFKAGTGLREVVMEEPIFTVHLVESQMLEYEEPTF  438 (751)
T ss_dssp             CCEEECCCSSEEEEEEEECSSEEEEEEEETTEEEEEEEECCTTTSCCCTTTCCEECCCCCSSCEEEECGGGCCCTTCSCE
T ss_pred             eeeEECCCCCcEEEEEEEECCEEEEEEEeCCEEEEEEEecccccccccCCccceEECCCCceeEEEeccCcccCCCCCEE
Confidence            21 122111 1345566665555666777775  555665       3333133332111 12333322    34554 4


Q ss_pred             EEEEECC---CeEEEEeCCCCe
Q psy12697        419 LASCSDD---MTLKIWSLDKDN  437 (602)
Q Consensus       419 l~~~~~d---g~i~iwd~~~~~  437 (602)
                      +++.+..   ..+..+|+.+++
T Consensus       439 ~~~~ss~~~P~~~~~~d~~~~~  460 (751)
T 2xe4_A          439 RMEYSSLATPNTWFDVSPQDHS  460 (751)
T ss_dssp             EEEEEETTEEEEEEEECTTTCC
T ss_pred             EEEEeCCCCCCEEEEEECCCCc
Confidence            4444432   457778877654

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=98.47  E-value=0.002  Score=65.94  Aligned_cols=330  Identities=8%  Similarity=-0.030  Sum_probs=170.3

Q ss_pred             cceEEEEEcCCCCEEE-EeeCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEeeCCCCCeEEEEeC-
Q psy12697        223 SEVFICAWNPVKDFLA-SGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFLATGSY-  300 (602)
Q Consensus       223 ~~v~~~~~~~~~~~l~-s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-  300 (602)
                      .....+++.+.+..|+ +-...+.|.+.+++.....      .+..          ..-.....+++.|.+..|+.... 
T Consensus        84 ~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~~------~l~~----------~~l~~P~~Iavdp~~g~ly~tD~g  147 (619)
T 3s94_A           84 LSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRK------VLFW----------QELDQPRAIALDPSSGFMYWTDWG  147 (619)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE------EEEC----------SSCSCCCCEEEETTTTEEEEEECS
T ss_pred             CCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCEE------EEEe----------CCCCCCceEEEecCCCeEEEeccC
Confidence            5678899998665444 4456788999988754321      1100          01244678999997666655543 


Q ss_pred             -CCeEEEEcCCCcceeecc-cccCCeEEEEEccCCCEEEEEe-cCCcEEEEeCCCCceeEEeeeccCCeeeeeccCCCeE
Q psy12697        301 -DGYARIWTSDGSLKSTLG-QHKGPIFALKWNKRGNYILSAG-VDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTSF  377 (602)
Q Consensus       301 -dg~i~i~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~-~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  377 (602)
                       .+.|...+++|.....+. ..-.....+++++++..|+.+. ..+.|...|+..................+++..+..+
T Consensus       148 ~~~~I~r~~~dG~~~~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~gi~~~~~~ly  227 (619)
T 3s94_A          148 EVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFEDILY  227 (619)
T ss_dssp             SSCEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC---------CCCEEESSSEEE
T ss_pred             CCCEEEEEECCCCceEEEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEEEeCCCCCceEEEEeCCEEE
Confidence             467877888876554443 2345678999999777776654 4567888888654333222212233456666666556


Q ss_pred             EEeeCCCeEEEEEcCCCceeeEeccCCCCeEEEEEC-CC----C---------------------CEEEEEECCCeEEEE
Q psy12697        378 ASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWD-PQ----G---------------------LLLASCSDDMTLKIW  431 (602)
Q Consensus       378 ~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~-~~----~---------------------~~l~~~~~dg~i~iw  431 (602)
                      ++-...+.|...|..+++....+.........+++. |.    +                     ...-+.+.+|....-
T Consensus       228 ~td~~~~~V~~~d~~tg~~~~~i~~~~~~p~~i~v~~~~~qp~~~n~C~~~ng~Cs~lCl~~~~~~~~~C~C~~g~~l~~  307 (619)
T 3s94_A          228 WTDWSTHSILACNKYTGEGLREIHSDIFSPMDIHAFSQQRQPNATNPCGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLE  307 (619)
T ss_dssp             EECTTTCSEEEEESSSCCCCEECCSCCCCCSEEEECCGGGSCCCCCTTTTTGGGCSSEEEECSSTTSEEEECCTTCCBCT
T ss_pred             EecCCCCEEEEEECCCCcccEEEecCCCCCcEEEEEccccCCCccccccCCCCcccceEECCCCCCCceEeCCchheecc
Confidence            666677889999988776554443322223333332 10    0                     001111111110000


Q ss_pred             eCCCCeee-----EeeccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEE-eCCCeEE
Q psy12697        432 SLDKDNCV-----HDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSA-GVDKTTI  505 (602)
Q Consensus       432 d~~~~~~~-----~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~~dg~i~  505 (602)
                      |  ...|.     .-+-.....|..+.+.+....       ..   . .....-..+.+++|.+.+..|..+ ...+.|+
T Consensus       308 d--~~~C~~~~~~~Ll~~~~~~i~~i~l~~~~~~-------~~---~-~~~~~l~~~~~ld~d~~~~~ly~sD~~~~~I~  374 (619)
T 3s94_A          308 N--GKTCKDGATELLLLARRTDLRRISLDTPDFT-------DI---V-LQLEDIRHAIAIDYDPVEGYIYWTDDEVRAIR  374 (619)
T ss_dssp             T--SSCBCSSCSEEEEEEESSCEEEEESSSTTCC-------CE---E-CCCSCCSSEEEEEEETTTTEEEEEETTTTEEE
T ss_pred             c--CcccCCCCceEEEEEcccceEEEecCCCccc-------ee---E-EeccccCccEEEEEEcCCCeEEEEeCCCCeEE
Confidence            0  00000     000011122222222211100       00   0 000112346789999865555544 4578899


Q ss_pred             EEeCCCCceeeeecccCCCeeEeeecCCc--eEEEeeCCCcEEEeecCCCCceeeeecccccceEEEEecCCcEEEEEEC
Q psy12697        506 IWDAASGQCEQQFSFHSAPALDVDWQSNT--SFASCSTDQHIHVCKLHSDKPVKSFEGHTTGQLVHSYKGTGGIFEVCWN  583 (602)
Q Consensus       506 iwd~~~~~~~~~~~~~~~~v~~~~~s~~~--~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s  583 (602)
                      .+++........+...-.....+++.+.+  .+.+-...+.|.+.++..... ..+...          .-.....|++.
T Consensus       375 r~~~~g~~~~~v~~~~~~~p~GlAvD~~~~~lY~tD~~~~~I~v~~~~G~~~-~~l~~~----------~l~~P~~iavd  443 (619)
T 3s94_A          375 RSFIDGSGSQFVVTAQIAHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGTMR-KILISE----------DLEEPRAIVLD  443 (619)
T ss_dssp             EEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEECT----------TCCSEEEEEEE
T ss_pred             EEEcCCCccEEEEECCCCCcCceEEecccCcEEEEeCCCCcEEEEeCCCCeE-EEEEEC----------CCCCeeeEEEE
Confidence            99987544333333333456788887644  445555678899988765422 222111          11345677777


Q ss_pred             CCCCeEEEe
Q psy12697        584 SRGDKVGAS  592 (602)
Q Consensus       584 pdg~~l~~~  592 (602)
                      |....|+.+
T Consensus       444 p~~G~ly~t  452 (619)
T 3s94_A          444 PMVGYMYWT  452 (619)
T ss_dssp             TTTTEEEEE
T ss_pred             cCCCcEEEe
Confidence            764444443

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=98.45  E-value=0.0011  Score=62.15  Aligned_cols=277  Identities=10%  Similarity=-0.005  Sum_probs=149.2

Q ss_pred             CcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEeeCCCCCeEEEEeCC
Q psy12697        222 ESEVFICAWNPVKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFLATGSYD  301 (602)
Q Consensus       222 ~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d  301 (602)
                      ...+.++.|.+.+..+++ +.+|.| +...+.++.=......            .......+.++.+.+ +..++ ++..
T Consensus        35 ~~~~~~v~~~~~~~~~~~-G~~g~i-~~s~DgG~tW~~~~~~------------~~~~~~~~~~i~~~~-~~~~~-~g~~   98 (327)
T 2xbg_A           35 TATILDMSFIDRHHGWLV-GVNATL-METRDGGQTWEPRTLV------------LDHSDYRFNSVSFQG-NEGWI-VGEP   98 (327)
T ss_dssp             SSCEEEEEESSSSCEEEE-ETTTEE-EEESSTTSSCEECCCC------------CSCCCCEEEEEEEET-TEEEE-EEET
T ss_pred             CCcEEEEEECCCCcEEEE-cCCCeE-EEeCCCCCCCeECCCC------------CCCCCccEEEEEecC-CeEEE-EECC
Confidence            457899999877777774 456654 2233322211000000            001134688888876 44444 4556


Q ss_pred             CeEEEEcCCCcceeecc---cccCCeEEEEEccCCCEEEEEecCCcEEEEeCCCCceeEE-eeeccCCeeeeeccCCCeE
Q psy12697        302 GYARIWTSDGSLKSTLG---QHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQ-FSFHSAPALDVDWQSNTSF  377 (602)
Q Consensus       302 g~i~i~~~~~~~~~~~~---~~~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~  377 (602)
                      |.|..-.-.++.-....   .+...+..+.+.+++..++++ .+|.|..- ...++.-.. .......+..+.+.+++.+
T Consensus        99 g~i~~S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~g~v~~S-~DgG~tW~~~~~~~~~~~~~~~~~~~~~~  176 (327)
T 2xbg_A           99 PIMLHTTDGGQSWSQIPLDPKLPGSPRLIKALGNGSAEMIT-NVGAIYRT-KDSGKNWQALVQEAIGVMRNLNRSPSGEY  176 (327)
T ss_dssp             TEEEEESSTTSSCEECCCCTTCSSCEEEEEEEETTEEEEEE-TTCCEEEE-SSTTSSEEEEECSCCCCEEEEEECTTSCE
T ss_pred             CeEEEECCCCCCceECccccCCCCCeEEEEEECCCCEEEEe-CCccEEEE-cCCCCCCEEeecCCCcceEEEEEcCCCcE
Confidence            65554332243333322   233557788887777655554 45544321 122322222 2233446778888888877


Q ss_pred             EEeeCCCeEEEEEcCCCceeeEe-ccCCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeeeEeeccccccEEEEEECC
Q psy12697        378 ASCSTDQHIHVCKLHSDKPVKSF-EGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHDLQAHNKEIYTIKWSP  456 (602)
Q Consensus       378 ~~~~~~~~i~i~d~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~  456 (602)
                      ++.+.+|.++.-+-..++.-..+ ......+..+.++++++.+ ..+.+|.+++.+.+.++.-..+....          
T Consensus       177 ~~~g~~G~~~~S~d~gG~tW~~~~~~~~~~~~~~~~~~~g~~~-~~~~~G~~~~s~~D~G~tW~~~~~~~----------  245 (327)
T 2xbg_A          177 VAVSSRGSFYSTWEPGQTAWEPHNRTTSRRLHNMGFTPDGRLW-MIVNGGKIAFSDPDNSENWGELLSPL----------  245 (327)
T ss_dssp             EEEETTSSEEEEECTTCSSCEEEECCSSSCEEEEEECTTSCEE-EEETTTEEEEEETTEEEEECCCBCTT----------
T ss_pred             EEEECCCcEEEEeCCCCCceeECCCCCCCccceeEECCCCCEE-EEeCCceEEEecCCCCCeeEeccCCc----------
Confidence            77777777665432212222221 2345578899999998765 45567877776433233222111100          


Q ss_pred             CCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeeecc---cCCCeeEeeecCC
Q psy12697        457 TGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSF---HSAPALDVDWQSN  533 (602)
Q Consensus       457 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~---~~~~v~~~~~s~~  533 (602)
                                          ......+.++.+.+++.+++++ .+|.| .+..+.|+.-..+..   ....+.++.|.++
T Consensus       246 --------------------~~~~~~~~~v~~~~~~~~~~~g-~~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~  303 (327)
T 2xbg_A          246 --------------------RRNSVGFLDLAYRTPNEVWLAG-GAGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSP  303 (327)
T ss_dssp             --------------------SSCCSCEEEEEESSSSCEEEEE-STTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEET
T ss_pred             --------------------ccCCcceEEEEecCCCEEEEEe-CCCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEECC
Confidence                                0012245667777777766655 46766 344444544333332   2356788888766


Q ss_pred             ceEEEeeCCCcEEEee
Q psy12697        534 TSFASCSTDQHIHVCK  549 (602)
Q Consensus       534 ~~l~~~~~d~~i~iw~  549 (602)
                      +.+++++.+|.|.-++
T Consensus       304 ~~~~~~G~~G~i~~~~  319 (327)
T 2xbg_A          304 DQGFILGQKGILLRYV  319 (327)
T ss_dssp             TEEEEECSTTEEEEEC
T ss_pred             CceEEEcCCceEEEEc
Confidence            6777788899877665

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=98.44  E-value=0.00012  Score=71.52  Aligned_cols=151  Identities=10%  Similarity=0.107  Sum_probs=98.3

Q ss_pred             ceeEEeeCC-CCCeEEEEeCCCeEEEEcCCCcceeecccccCCeEEEEEccCCCEEEEEecC-C----cEEEEeCCCCce
Q psy12697        282 DVTSLDWNN-NGSFLATGSYDGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVD-K----TTIIWDAASGQC  355 (602)
Q Consensus       282 ~i~~~~~~~-~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-g----~i~~wd~~~~~~  355 (602)
                      ....++++| ++..|.++...+.|+.+|.++..+..+.........++|++++++|+.+... +    .+..++ ..+..
T Consensus       138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~-~~g~~  216 (430)
T 3tc9_A          138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILT-RESGF  216 (430)
T ss_dssp             CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEE-GGGTS
T ss_pred             CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEe-CCCce
Confidence            467889998 4556666666588999999876665555555678899999999977766542 1    233333 33322


Q ss_pred             e--EEeeeccCCeeeeeccC-CCeEEEee-CCCeEEEEEcCCCceeeEec-cCCCCeEEEEECCCCCEEEEE-ECCCeEE
Q psy12697        356 E--QQFSFHSAPALDVDWQS-NTSFASCS-TDQHIHVCKLHSDKPVKSFE-GHTNEVNAIKWDPQGLLLASC-SDDMTLK  429 (602)
Q Consensus       356 ~--~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~i~i~d~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~-~~dg~i~  429 (602)
                      .  ..+. .......+++.+ ++.++++. .++.|..++...+....... +.......++|+|+|++|+.+ ...+.|.
T Consensus       217 ~~~~~l~-~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I~  295 (430)
T 3tc9_A          217 KVITELT-KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYIL  295 (430)
T ss_dssp             CSEEEEE-ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEE
T ss_pred             eeeeeec-cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEEE
Confidence            2  2222 233456677787 56655544 67889999988765422222 122457899999999955554 4568899


Q ss_pred             EEeCC
Q psy12697        430 IWSLD  434 (602)
Q Consensus       430 iwd~~  434 (602)
                      .++..
T Consensus       296 ~~~~d  300 (430)
T 3tc9_A          296 RSDYD  300 (430)
T ss_dssp             EEEEE
T ss_pred             EEeCC
Confidence            98765

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=98.42  E-value=0.0008  Score=64.92  Aligned_cols=232  Identities=12%  Similarity=0.000  Sum_probs=141.0

Q ss_pred             eEEEEeCCCeEEEEcCCCcceeecccccCCeEEEEEccCCCEEEEEe-cCCcEEEEeCCCC----ceeEEeeeccCCeee
Q psy12697        294 FLATGSYDGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAG-VDKTTIIWDAASG----QCEQQFSFHSAPALD  368 (602)
Q Consensus       294 ~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~~wd~~~~----~~~~~~~~~~~~~~~  368 (602)
                      +|+.+ ....|+..++++.....+......+..++|++....|+.+. ..+.|..+++...    .....+.........
T Consensus        85 ~ll~~-~~~~I~~i~l~~~~~~~~~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~g  163 (400)
T 3p5b_L           85 YLFFT-NRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDG  163 (400)
T ss_dssp             EEEEE-ETTEEEEECTTSCSCEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEE
T ss_pred             eeEEe-ccceeEEEccCCcceeEeccccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCccc
Confidence            34333 34678888888765555555567789999998766666554 4678888887652    222222222334445


Q ss_pred             eecc--CCCeEEEeeCCCeEEEEEcCCCceeeEeccCCCCeEEEEECCCCCEEEEEEC--CCeEEEEeCCCCeeeEeecc
Q psy12697        369 VDWQ--SNTSFASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSD--DMTLKIWSLDKDNCVHDLQA  444 (602)
Q Consensus       369 ~~~~--~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~  444 (602)
                      +++.  .+..+++-...+.|.+.++........+.........++++|.+..|+....  .+.|...+++..........
T Consensus       164 lavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~~  243 (400)
T 3p5b_L          164 LAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTE  243 (400)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEECS
T ss_pred             EEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEEC
Confidence            5544  3455556667789999998866554444444556889999997666665543  36777777653221111110


Q ss_pred             ccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEe-CCCeEEEEeCCCCceeeeecc--c
Q psy12697        445 HNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAG-VDKTTIIWDAASGQCEQQFSF--H  521 (602)
Q Consensus       445 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~--~  521 (602)
                                                        .-.....|++++++..|..+. ..+.|..+|+...........  .
T Consensus       244 ----------------------------------~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~  289 (400)
T 3p5b_L          244 ----------------------------------NIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKR  289 (400)
T ss_dssp             ----------------------------------SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECSST
T ss_pred             ----------------------------------CCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCCC
Confidence                                              123456788887776666654 467899999875433322222  1


Q ss_pred             CCCeeEeeecCCceEEEeeCCCcEEEeecCCCCceeeee
Q psy12697        522 SAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFE  560 (602)
Q Consensus       522 ~~~v~~~~~s~~~~l~~~~~d~~i~iw~~~~~~~~~~~~  560 (602)
                      -.....+++..+..+.+-...+.|..++..+++.+..+.
T Consensus       290 l~~P~gl~v~~~~lywtd~~~~~V~~~~~~~G~~~~~i~  328 (400)
T 3p5b_L          290 LAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLA  328 (400)
T ss_dssp             TSSEEEEEEETTEEEEEESSSCSEEEEESSSCCCCEEEE
T ss_pred             CCCCEEEEEeCCEEEEecCCCCeEEEEEcCCCCceEEEe
Confidence            234556777444455566677889999977776665554

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=98.42  E-value=0.00046  Score=64.14  Aligned_cols=226  Identities=8%  Similarity=-0.046  Sum_probs=133.9

Q ss_pred             CCeEEEEcCCCcc--eeecccccCCeEEEEEccCCCEEEEE-ecCCcEEEEeCCCCcee-EEeeeccCCeeeeecc--CC
Q psy12697        301 DGYARIWTSDGSL--KSTLGQHKGPIFALKWNKRGNYILSA-GVDKTTIIWDAASGQCE-QQFSFHSAPALDVDWQ--SN  374 (602)
Q Consensus       301 dg~i~i~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~~wd~~~~~~~-~~~~~~~~~~~~~~~~--~~  374 (602)
                      ...|+.+++++..  .............+.|.+.+..|+.+ ...+.|..++...+... ......-.....+++.  .+
T Consensus        12 ~~~I~~i~l~~~~~~~~~~~~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g   91 (318)
T 3sov_A           12 RRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGE   91 (318)
T ss_dssp             EEEEEEEETTCTTSCCEEEEEEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTT
T ss_pred             cCeEEEEECCCCceEEEEEecCCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCC
Confidence            4678888887642  22222223456789999865555544 45678888988765321 1222222233444444  34


Q ss_pred             CeEEEeeCCCeEEEEEcCCCceeeEeccCCCCeEEEEECCCCCEEEEEEC--CCeEEEEeCCCCeeeEeeccccccEEEE
Q psy12697        375 TSFASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSD--DMTLKIWSLDKDNCVHDLQAHNKEIYTI  452 (602)
Q Consensus       375 ~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~i~~~  452 (602)
                      ..+++-...+.|.++++........+.........++++|.+..|+.+..  .+.|...+++... ...+..        
T Consensus        92 ~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~-~~~~~~--------  162 (318)
T 3sov_A           92 KLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSS-RFIIIN--------  162 (318)
T ss_dssp             EEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCS-CEEEEC--------
T ss_pred             eEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCC-eEEEEE--------
Confidence            44555566789999998765443333344566889999997666666553  4677777765321 111100        


Q ss_pred             EECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEE-eCCCeEEEEeCCCCceeeeecccCCCeeEeeec
Q psy12697        453 KWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSA-GVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQ  531 (602)
Q Consensus       453 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s  531 (602)
                                               ..-.....+++++++..|..+ ...+.|..+|+..................+++.
T Consensus       163 -------------------------~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~glav~  217 (318)
T 3sov_A          163 -------------------------SEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLF  217 (318)
T ss_dssp             -------------------------SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSCCSCEEEEEEE
T ss_pred             -------------------------CCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEecCCCCCceEEEEe
Confidence                                     011234678888866666555 456789999987433322222233445677776


Q ss_pred             CCceEEEeeCCCcEEEeecCCCCceeeee
Q psy12697        532 SNTSFASCSTDQHIHVCKLHSDKPVKSFE  560 (602)
Q Consensus       532 ~~~~l~~~~~d~~i~iw~~~~~~~~~~~~  560 (602)
                      .++.+.+-...+.|..++..+++....+.
T Consensus       218 ~~~lywtd~~~~~V~~~~~~~G~~~~~i~  246 (318)
T 3sov_A          218 EDILYWTDWSTHSILACNKYTGEGLREIH  246 (318)
T ss_dssp             TTEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred             CCEEEEEecCCCeEEEEECCCCCceEEEe
Confidence            55555666677889999987776555443

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.39  E-value=0.00097  Score=59.02  Aligned_cols=209  Identities=12%  Similarity=0.104  Sum_probs=137.1

Q ss_pred             eeeccCCceEEEEECCCCCeEE-EeeCCceEEEEecCCceeEEEeeccCceEEEEeCCCCCCCCCCCCccccccccccCC
Q psy12697        135 TLTRHTEPVYSVAFSPDGKFLA-SGSFDKCVHIWSARTGQLVHSYKGTGGIFEVCWNSRGTPPNPPESMEVDASIEIPQS  213 (602)
Q Consensus       135 ~l~~h~~~V~~~~~s~d~~~l~-s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  213 (602)
                      .+.+-...+..++++|++..|+ +...++.|...|.. ++.++.++.                                 
T Consensus        21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l---------------------------------   66 (255)
T 3qqz_A           21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPL---------------------------------   66 (255)
T ss_dssp             ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEEC---------------------------------
T ss_pred             ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEec---------------------------------
Confidence            4555556899999999776554 56678999999987 877765532                                 


Q ss_pred             cceEeeCCCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEeeCCCCC
Q psy12697        214 KATKLIGHESEVFICAWNPVKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGS  293 (602)
Q Consensus       214 ~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  293 (602)
                            +-....-.+++.+++.++++.-.++.+.++++......     .......+.  ....+.+.....++|+|.++
T Consensus        67 ------~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~~~~i-----~~~~~~~~~--~~~~~~N~g~EGLA~d~~~~  133 (255)
T 3qqz_A           67 ------DFVKDLETIEYIGDNQFVISDERDYAIYVISLTPNSEV-----KILKKIKIP--LQESPTNCGFEGLAYSRQDH  133 (255)
T ss_dssp             ------SSCSSEEEEEECSTTEEEEEETTTTEEEEEEECTTCCE-----EEEEEEECC--CSSCCCSSCCEEEEEETTTT
T ss_pred             ------CCCCChHHeEEeCCCEEEEEECCCCcEEEEEcCCCCee-----eeeeeeccc--cccccccCCcceEEEeCCCC
Confidence                  11245667888888887777667788999988765421     111111111  01224467789999999998


Q ss_pred             eEEEEeCCCeEEEEcCCC----cceeec-------ccccCCeEEEEEccCCCEEE-EEecCCcEEEEeCCCCceeEEeee
Q psy12697        294 FLATGSYDGYARIWTSDG----SLKSTL-------GQHKGPIFALKWNKRGNYIL-SAGVDKTTIIWDAASGQCEQQFSF  361 (602)
Q Consensus       294 ~l~~~~~dg~i~i~~~~~----~~~~~~-------~~~~~~i~~~~~~~~~~~l~-~~~~dg~i~~wd~~~~~~~~~~~~  361 (602)
                      .|.++.......+|..++    ......       ..+...+.++++.|....|+ .....+.+..+|.. ++.+..+..
T Consensus       134 ~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L  212 (255)
T 3qqz_A          134 TFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSL  212 (255)
T ss_dssp             EEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTT-CCEEEEEEC
T ss_pred             EEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEc
Confidence            888777765555555432    111111       11234578999999765555 45556778888865 666666655


Q ss_pred             cc---------CCeeeeeccCCCeEEEeeCCCeEEEEEc
Q psy12697        362 HS---------APALDVDWQSNTSFASCSTDQHIHVCKL  391 (602)
Q Consensus       362 ~~---------~~~~~~~~~~~~~~~~~~~~~~i~i~d~  391 (602)
                      ..         ...-.+++.+++.+.+.++.+.++.+.-
T Consensus       213 ~~g~~~l~~~~~qpEGia~d~~G~lyIvsE~n~~y~f~~  251 (255)
T 3qqz_A          213 TKGSRGLSHNIKQAEGVAMDASGNIYIVSEPNRFYRFTP  251 (255)
T ss_dssp             STTGGGCSSCCCSEEEEEECTTCCEEEEETTTEEEEEEC
T ss_pred             CCccCCcccccCCCCeeEECCCCCEEEEcCCceEEEEEe
Confidence            43         2567888999988888888887777754

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.35  E-value=0.00079  Score=63.64  Aligned_cols=206  Identities=9%  Similarity=-0.079  Sum_probs=127.3

Q ss_pred             CcceEEEEEcCCCCEEEEe-eCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEeeCCCCCeE-EEEe
Q psy12697        222 ESEVFICAWNPVKDFLASG-SGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFL-ATGS  299 (602)
Q Consensus       222 ~~~v~~~~~~~~~~~l~s~-~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l-~~~~  299 (602)
                      ...+..++|.+.+..|+.+ ...+.|..+++......      ...    .      ........+++.+.+..| ++-.
T Consensus        72 ~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~------~~~----~------~~~~~p~glavd~~~g~ly~~d~  135 (349)
T 3v64_C           72 LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVE------EVV----S------TGLESPGGLAVDWVHDKLYWTDS  135 (349)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE------EEE----C------SSCSCCCEEEEETTTTEEEEEET
T ss_pred             CCceEEEEEeccccEEEEEeccCCceEEEecCCCCce------EEE----e------CCCCCccEEEEecCCCeEEEEcC
Confidence            3457889999866655544 45778888888754321      000    0      001345678888755444 5555


Q ss_pred             CCCeEEEEcCCCcceeecc-cccCCeEEEEEccCCCEEEEEec-C-CcEEEEeCCCCceeEEeeeccCCeeeeeccC-CC
Q psy12697        300 YDGYARIWTSDGSLKSTLG-QHKGPIFALKWNKRGNYILSAGV-D-KTTIIWDAASGQCEQQFSFHSAPALDVDWQS-NT  375 (602)
Q Consensus       300 ~dg~i~i~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~-d-g~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~-~~  375 (602)
                      ..+.|.+.+.++.....+. ........+++.|.+..|+.+.. . +.|..+++............-.....+++.+ ++
T Consensus       136 ~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGla~d~~~~  215 (349)
T 3v64_C          136 GTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGR  215 (349)
T ss_dssp             TTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEESCCSSCSCEEEEEEETTTT
T ss_pred             CCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCcceEEEeCCCC
Confidence            5688999999876554443 33456789999997666665543 3 6788888764333222222334467788875 45


Q ss_pred             eEE-EeeCCCeEEEEEcCCCceeeEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeeeEeecc
Q psy12697        376 SFA-SCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHDLQA  444 (602)
Q Consensus       376 ~~~-~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~  444 (602)
                      .+. +-...+.|..+++........+.........+++. .+.++++-...+.|..++..+++....+..
T Consensus       216 ~lY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~giav~-~~~ly~td~~~~~V~~~~~~~G~~~~~i~~  284 (349)
T 3v64_C          216 RMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITVF-EDSLYWTDWHTKSINSANKFTGKNQEIIRN  284 (349)
T ss_dssp             EEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCSCEEEEC
T ss_pred             EEEEEECCCCEEEEEeCCCCceEEEEeCCCCCceEEEEE-CCEEEEecCCCCeEEEEEccCCCccEEecc
Confidence            544 44456789999987654333343344567788883 455555656678888888666666555543

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.33  E-value=0.00047  Score=66.27  Aligned_cols=215  Identities=10%  Similarity=-0.074  Sum_probs=130.8

Q ss_pred             CcceEEEEEcCCCCEEE-EeeCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEeeCCCCCeE-EEEe
Q psy12697        222 ESEVFICAWNPVKDFLA-SGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFL-ATGS  299 (602)
Q Consensus       222 ~~~v~~~~~~~~~~~l~-s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l-~~~~  299 (602)
                      ...+..++|.+.+..|+ +-...+.|..+++......      ..    ..      ........+++.+.+..| ++-.
T Consensus       115 ~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~------~~----~~------~~~~~p~glavd~~~g~lY~~d~  178 (386)
T 3v65_B          115 LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVE------EV----VS------TGLESPGGLAVDWVHDKLYWTDS  178 (386)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEE------EE----EC------SSCSCCCCEEEETTTTEEEEEET
T ss_pred             CCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcE------EE----Ee------CCCCCccEEEEEeCCCeEEEEcC
Confidence            34578899998665555 4445778888888754311      00    00      001234678888755444 5555


Q ss_pred             CCCeEEEEcCCCcceeecc-cccCCeEEEEEccCCCEEEEEec-C-CcEEEEeCCCCceeEEeeeccCCeeeeeccC-CC
Q psy12697        300 YDGYARIWTSDGSLKSTLG-QHKGPIFALKWNKRGNYILSAGV-D-KTTIIWDAASGQCEQQFSFHSAPALDVDWQS-NT  375 (602)
Q Consensus       300 ~dg~i~i~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~-d-g~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~-~~  375 (602)
                      ..+.|.+.++++.....+. ........+++.|.+..|+.+.. . +.|..+++............-.....+++++ ++
T Consensus       179 ~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGlavd~~~~  258 (386)
T 3v65_B          179 GTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGR  258 (386)
T ss_dssp             TTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEEGGGT
T ss_pred             CCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCeeeEEEeCCCC
Confidence            5678999998876544433 33356789999987776665543 3 6788888764433332222333466788874 34


Q ss_pred             eE-EEeeCCCeEEEEEcCCCceeeEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeeeEeeccccccEEEEE
Q psy12697        376 SF-ASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHDLQAHNKEIYTIK  453 (602)
Q Consensus       376 ~~-~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~  453 (602)
                      .+ ++-...+.|..+++........+.........+++. .+.++++-...+.|..++..+++....+.........++
T Consensus       259 ~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~giav~-~~~ly~td~~~~~V~~~~~~~G~~~~~i~~~~~~p~gi~  336 (386)
T 3v65_B          259 RMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITVF-EDSLYWTDWHTKSINSANKFTGKNQEIIRNKLHFPMDIH  336 (386)
T ss_dssp             EEEEEETTTTEEEEECTTSCSCEEEECSSCSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCSCEEEECSCSCCCCEE
T ss_pred             EEEEEECCCCEEEEEeCCCCeeEEEEECCCCCceEEEEE-CCEEEEeeCCCCeEEEEECCCCcceEEEccCCCCCceEE
Confidence            44 444556789999987554433344344567788883 455666666778899998777766666554333333343

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=98.33  E-value=0.00089  Score=65.27  Aligned_cols=246  Identities=8%  Similarity=0.031  Sum_probs=136.6

Q ss_pred             ceeEEeeCCC--CCeEEEEeCCCeEEEEcCCCcceeecccccCCeEEEEEccCCCEEEEEecCC-----cEEEEeCCCCc
Q psy12697        282 DVTSLDWNNN--GSFLATGSYDGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDK-----TTIIWDAASGQ  354 (602)
Q Consensus       282 ~i~~~~~~~~--~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg-----~i~~wd~~~~~  354 (602)
                      ....++|+|+  +..|.++...+.|+.++.....+..+.........++++++|+ |+.+...+     .+...+...+.
T Consensus       140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~~~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~~~~~  218 (433)
T 4hw6_A          140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKTTNIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTRASGF  218 (433)
T ss_dssp             CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEECCCCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEECGGGTT
T ss_pred             CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEeecCCCCccEEEECCCCC-EEEEcCCCCcccceEEEEECCCCe
Confidence            4578999984  4455555544889999986555555555556689999999999 55554321     13333322221


Q ss_pred             ee-EEeeeccCCeeeeeccC-CCeEEEee-CCCeEEEEEcCCCceeeEe-c-cCCCCeEEEEECCCCCEEEEEE-CCCeE
Q psy12697        355 CE-QQFSFHSAPALDVDWQS-NTSFASCS-TDQHIHVCKLHSDKPVKSF-E-GHTNEVNAIKWDPQGLLLASCS-DDMTL  428 (602)
Q Consensus       355 ~~-~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~i~i~d~~~~~~~~~~-~-~~~~~i~~~~~~~~~~~l~~~~-~dg~i  428 (602)
                      .. ..+. .......+++.+ ++.+.++. .++.|+.++..++.....+ . +....-..++|+|+++.|..+. ..+.|
T Consensus       219 ~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I  297 (433)
T 4hw6_A          219 TERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCI  297 (433)
T ss_dssp             CCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEE
T ss_pred             ecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEE
Confidence            10 1111 233455677777 66666554 5678999998877652222 1 1122345799999999555554 56789


Q ss_pred             EEEeCCC--Ceee--EeeccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEE---------ccCCCEE
Q psy12697        429 KIWSLDK--DNCV--HDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKW---------NKRGNYI  495 (602)
Q Consensus       429 ~iwd~~~--~~~~--~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~---------s~~~~~l  495 (602)
                      +.+++..  +...  ..+.+          .+......    .     .......-.....+++         .++|.++
T Consensus       298 ~~~~~d~~~~~~~~~~~~ag----------~~g~~g~~----d-----g~~~~a~~~~P~giav~~n~~y~~dd~~g~ly  358 (433)
T 4hw6_A          298 YRVDYNRETGKLAVPYIVCG----------QHSSPGWV----D-----GMGTGARLWGPNQGIFVKNEAYAGEEDEYDFY  358 (433)
T ss_dssp             EEEEBCTTTCCBCCCEEEEE----------CTTCCCCB----C-----EEGGGSBCSSEEEEEEEECGGGTTSSCCEEEE
T ss_pred             EEEeCCCCCcccCcEEEEEe----------cCCCCccC----C-----CcccceEEcCCccEEEEccccccccCCCCcEE
Confidence            9987652  2211  11111          00000000    0     0000111234567888         6777777


Q ss_pred             EEEeCCCeEEEEeCCCCceeeeeccc------------------CCCeeEeeec-CCc-eEEEeeCCCcEEEeec
Q psy12697        496 LSAGVDKTTIIWDAASGQCEQQFSFH------------------SAPALDVDWQ-SNT-SFASCSTDQHIHVCKL  550 (602)
Q Consensus       496 ~s~~~dg~i~iwd~~~~~~~~~~~~~------------------~~~v~~~~~s-~~~-~l~~~~~d~~i~iw~~  550 (602)
                      ++-...+.|+.++. +|... ++.+.                  -.....+++. +++ .+++-...+.|+.+++
T Consensus       359 vaD~~n~~I~~~~~-~G~v~-t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~  431 (433)
T 4hw6_A          359 FCDRDSHTVRVLTP-EGRVT-TYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAP  431 (433)
T ss_dssp             EEETTTTEEEEECT-TSEEE-EEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEE
T ss_pred             EEECCCCEEEEECC-CCCEE-EEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEec
Confidence            77777788999985 45433 22221                  0124567777 555 4444444566666654

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=98.32  E-value=0.0024  Score=61.54  Aligned_cols=244  Identities=11%  Similarity=0.012  Sum_probs=143.7

Q ss_pred             CEEEEeeCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEeeCCCCCeEEEE-eCCCeEEEEcCCCc-
Q psy12697        235 DFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFLATG-SYDGYARIWTSDGS-  312 (602)
Q Consensus       235 ~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~i~~~~~~-  312 (602)
                      .+|+.+. ...|+..++......      ..           ......+..++|++.+..|+.. ...+.|..+++++. 
T Consensus        84 ~~ll~~~-~~~I~~i~l~~~~~~------~~-----------~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~  145 (400)
T 3p5b_L           84 AYLFFTN-RHEVRKMTLDRSEYT------SL-----------IPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAH  145 (400)
T ss_dssp             CEEEEEE-TTEEEEECTTSCSCE------EE-----------ECSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC----
T ss_pred             ceeEEec-cceeEEEccCCccee------Ee-----------ccccCcceEEeeeeccCceEEEecCCCeEEEEEcccCC
Confidence            3444443 367888887654321      00           1123568899999866655555 45678888888752 


Q ss_pred             ----ceeecccccCCeEEEEEccCCCEEE-EEecCCcEEEEeCCCCceeEEeeeccCCeeeeeccC-CCeEEEee--CCC
Q psy12697        313 ----LKSTLGQHKGPIFALKWNKRGNYIL-SAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQS-NTSFASCS--TDQ  384 (602)
Q Consensus       313 ----~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--~~~  384 (602)
                          ..............+++.+.+..|+ +-...+.|.+.++........+.........++..| ++.++...  ..+
T Consensus       146 ~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~  225 (400)
T 3p5b_L          146 GVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPA  225 (400)
T ss_dssp             --CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSC
T ss_pred             CCCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCC
Confidence                2223333445678899988555454 445578899999876554444443444567788876 45554444  247


Q ss_pred             eEEEEEcCCCceeeEeccCCCCeEEEEECCCCCEEEEEE-CCCeEEEEeCCCCeeeEeeccccccEEEEEECCCCCCCCC
Q psy12697        385 HIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCS-DDMTLKIWSLDKDNCVHDLQAHNKEIYTIKWSPTGPETSN  463 (602)
Q Consensus       385 ~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~  463 (602)
                      .|...++............-.....|+++|++..|..+. ..+.|..+|++...........                  
T Consensus       226 ~I~~~~~dG~~~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~------------------  287 (400)
T 3p5b_L          226 KIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDE------------------  287 (400)
T ss_dssp             CEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECS------------------
T ss_pred             EEEEEeCCCCccEEEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCC------------------
Confidence            888888876544443343445789999999877777665 4578999987643221111100                  


Q ss_pred             CCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeeecccCCCeeEee
Q psy12697        464 PNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVD  529 (602)
Q Consensus       464 ~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~  529 (602)
                                    ........+++. .+.++++-...+.|..+|..+|+.+..+.........+.
T Consensus       288 --------------~~l~~P~gl~v~-~~~lywtd~~~~~V~~~~~~~G~~~~~i~~~~~~p~~i~  338 (400)
T 3p5b_L          288 --------------KRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDVNLLAENLLSPEDMV  338 (400)
T ss_dssp             --------------STTSSEEEEEEE-TTEEEEEESSSCSEEEEESSSCCCCEEEECSCSCEEEEE
T ss_pred             --------------CCCCCCEEEEEe-CCEEEEecCCCCeEEEEEcCCCCceEEEecCCCCCceEE
Confidence                          011122344442 334555555677899999888877766654433344444

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=98.31  E-value=0.0022  Score=59.65  Aligned_cols=206  Identities=10%  Similarity=-0.019  Sum_probs=122.4

Q ss_pred             CceeEEeeCCCCCeEEEE-eCCCeEEEEcCCC----cceee-cccccCCeEEEEEccCCCEEE-EEecCCcEEEEeCCCC
Q psy12697        281 KDVTSLDWNNNGSFLATG-SYDGYARIWTSDG----SLKST-LGQHKGPIFALKWNKRGNYIL-SAGVDKTTIIWDAASG  353 (602)
Q Consensus       281 ~~i~~~~~~~~~~~l~~~-~~dg~i~i~~~~~----~~~~~-~~~~~~~i~~~~~~~~~~~l~-~~~~dg~i~~wd~~~~  353 (602)
                      .....++|++.+..|+.+ ..++.|..++.++    ..... +.........+++.+.+..|+ +-...+.|.+.+....
T Consensus        30 ~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~  109 (316)
T 1ijq_A           30 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV  109 (316)
T ss_dssp             SSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSS
T ss_pred             CceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCC
Confidence            557899999866555544 4568999999876    22222 222224557889987555554 4456788999998754


Q ss_pred             ceeEEeeeccCCeeeeeccC-CCeEEEeeC-C-CeEEEEEcCCCceeeEeccCCCCeEEEEECCCCCEEEEEE-CCCeEE
Q psy12697        354 QCEQQFSFHSAPALDVDWQS-NTSFASCST-D-QHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCS-DDMTLK  429 (602)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~-~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~  429 (602)
                      ...............++..| ++.++.+.. . +.|..+++............-.....++++|++..|..+. ..+.|.
T Consensus       110 ~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~  189 (316)
T 1ijq_A          110 KRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSIS  189 (316)
T ss_dssp             SEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEE
T ss_pred             ceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCeEEEEECCCCCceEEEEeccCCEEEEEECCCCeEE
Confidence            43333333334567788876 455544443 2 6888888764433222223345688999999877776665 457899


Q ss_pred             EEeCCCCeeeEeeccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCCCeEEEEeC
Q psy12697        430 IWSLDKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDA  509 (602)
Q Consensus       430 iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~  509 (602)
                      .+|++.. ....+....                               ........+++. .+.++++-...+.|..+|.
T Consensus       190 ~~d~dg~-~~~~~~~~~-------------------------------~~~~~P~giav~-~~~ly~~d~~~~~V~~~~~  236 (316)
T 1ijq_A          190 SIDVNGG-NRKTILEDE-------------------------------KRLAHPFSLAVF-EDKVFWTDIINEAIFSANR  236 (316)
T ss_dssp             EEETTSC-SCEEEEECT-------------------------------TTTSSEEEEEEE-TTEEEEEETTTTEEEEEET
T ss_pred             EEecCCC-ceEEEeecC-------------------------------CccCCcEEEEEE-CCEEEEEECCCCeEEEEeC
Confidence            9998642 222211000                               011223455553 3455556666788999998


Q ss_pred             CCCceeeeec
Q psy12697        510 ASGQCEQQFS  519 (602)
Q Consensus       510 ~~~~~~~~~~  519 (602)
                      .+++.+..+.
T Consensus       237 ~~g~~~~~i~  246 (316)
T 1ijq_A          237 LTGSDVNLLA  246 (316)
T ss_dssp             TTCCCCEEEE
T ss_pred             CCCcceEEEe
Confidence            7777665554

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=98.31  E-value=0.0081  Score=65.94  Aligned_cols=186  Identities=14%  Similarity=0.191  Sum_probs=95.0

Q ss_pred             CcceEEEEEcCC------CCEEEEeeC-CCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEeeCCCCCe
Q psy12697        222 ESEVFICAWNPV------KDFLASGSG-DSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSF  294 (602)
Q Consensus       222 ~~~v~~~~~~~~------~~~l~s~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  294 (602)
                      ...|.|+++.|.      +++++.|.. |++++|+++.+.+..        .....  .....  ...+.-+.+ ....+
T Consensus       553 ~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~--------~~~~L--~~~~~--p~si~l~~~-~~~~~  619 (1158)
T 3ei3_A          553 EHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELL--------HKEML--GGEII--PRSILMTTF-ESSHY  619 (1158)
T ss_dssp             SSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEE--------EEEEC--CSSCC--EEEEEEEEE-TTEEE
T ss_pred             CCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeE--------EEEEC--CCCCC--CcEEEEEEe-CCCcE
Confidence            446888888763      368999996 999999999753221        11110  00000  112323333 23467


Q ss_pred             EEEEeCCCeEEEEcCC---Ccceee--cccccCCeEEEEEccCCCE-EEEEecCCcEEEEeCCCCceeEEeeeccCCeee
Q psy12697        295 LATGSYDGYARIWTSD---GSLKST--LGQHKGPIFALKWNKRGNY-ILSAGVDKTTIIWDAASGQCEQQFSFHSAPALD  368 (602)
Q Consensus       295 l~~~~~dg~i~i~~~~---~~~~~~--~~~~~~~i~~~~~~~~~~~-l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~  368 (602)
                      |.+|-.||.+..+.++   +.+...  ..-...++.-..+...+.. +++.+ +....++.-+ ++... .......+..
T Consensus       620 L~igl~dG~l~~~~~d~~tg~l~d~r~~~LG~~pv~L~~~~~~~~~~V~a~s-~rp~liy~~~-~~l~~-s~l~~~~v~~  696 (1158)
T 3ei3_A          620 LLCALGDGALFYFGLNIETGLLSDRKKVTLGTQPTVLRTFRSLSTTNVFACS-DRPTVIYSSN-HKLVF-SNVNLKEVNY  696 (1158)
T ss_dssp             EEEEETTSEEEEEEECTTTCCEEEEEEEECCSSCCEEEEEESSSCEEEEEES-SSCEEEEESS-SSEEE-EEBSSSCCCE
T ss_pred             EEEEeCCCeEEEEEEcCCCCccccceeEEcCCCceEEEEEeeCCceeEEEEC-CCCEEEEEcC-CceEE-eccChHHhce
Confidence            8899999988766543   332211  1111334444444444433 34443 4444444433 22211 1112222222


Q ss_pred             e-eccCC---CeEEEeeCCCeEEEEEcCCCc--eeeEeccCCCCeEEEEECCCCCEEEEEECC
Q psy12697        369 V-DWQSN---TSFASCSTDQHIHVCKLHSDK--PVKSFEGHTNEVNAIKWDPQGLLLASCSDD  425 (602)
Q Consensus       369 ~-~~~~~---~~~~~~~~~~~i~i~d~~~~~--~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d  425 (602)
                      + .|+..   +.++.. .++.++|..+....  .++++. -...+..++++|+.+.++.+..+
T Consensus       697 ~~~F~se~~~~g~v~~-~~~~LrI~~i~~~~~~~~~~ip-L~~Tprri~y~~~~~~~~v~~~~  757 (1158)
T 3ei3_A          697 MCPLNSDGYPDSLALA-NNSTLTIGTIDEIQKLHIRTVP-LYESPRKICYQEVSQCFGVLSSR  757 (1158)
T ss_dssp             EEEECCSSSTTEEEEE-CSSCEEEEEECCSSSEEEEEEE-CSSEEEEEEEEGGGTEEEEEEEE
T ss_pred             EeccCcccCCCcEEEE-cCCceEEEEecccCCeeEEEEe-CCCCceEEEEcCCCCEEEEEEEe
Confidence            2 23221   234433 34568888875433  223333 23568999999988877766543

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=98.27  E-value=0.00072  Score=65.91  Aligned_cols=242  Identities=10%  Similarity=0.091  Sum_probs=135.0

Q ss_pred             CeEEEEEccC--CCEEEEEecCCcEEEEeCCCCceeEEeeeccCCeeeeeccCCCeEEEeeCCC-----eEEEEEcCCCc
Q psy12697        323 PIFALKWNKR--GNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTSFASCSTDQ-----HIHVCKLHSDK  395 (602)
Q Consensus       323 ~i~~~~~~~~--~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~i~i~d~~~~~  395 (602)
                      ....++|+|+  ...|+.+...+.|+.+|..++...... ........+++.+++.++++...+     .+...+...+.
T Consensus       140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~-~~~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~~~~  218 (433)
T 4hw6_A          140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKT-TNIGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRASGF  218 (433)
T ss_dssp             CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEEC-CCCSCEEEEEECTTCCEEEEECCSCTTSEEEEEECGGGTT
T ss_pred             CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEee-cCCCCccEEEECCCCCEEEEcCCCCcccceEEEEECCCCe
Confidence            4568999984  445666655588999999877665443 344557888888887766665432     23333332221


Q ss_pred             e-eeEeccCCCCeEEEEECC-CCCEEEEEECCCeEEEEeCCCCeeeEeeccccccEEEEEECCCCCCCCCCCcceeeeee
Q psy12697        396 P-VKSFEGHTNEVNAIKWDP-QGLLLASCSDDMTLKIWSLDKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILK  473 (602)
Q Consensus       396 ~-~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~  473 (602)
                      . ...+. .......++++| +|.+.++-..++.|+.+|..++.....+....                           
T Consensus       219 ~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~---------------------------  270 (433)
T 4hw6_A          219 TERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMD---------------------------  270 (433)
T ss_dssp             CCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECS---------------------------
T ss_pred             ecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccC---------------------------
Confidence            1 01111 234456788999 67666666667889999987665422221000                           


Q ss_pred             eccCCccCCeEEEEEccCCCEEEEE-eCCCeEEEEeCC--CCcee--eeeccc---------------CCCeeEeee---
Q psy12697        474 STLGQHKGPIFALKWNKRGNYILSA-GVDKTTIIWDAA--SGQCE--QQFSFH---------------SAPALDVDW---  530 (602)
Q Consensus       474 ~~~~~~~~~v~~i~~s~~~~~l~s~-~~dg~i~iwd~~--~~~~~--~~~~~~---------------~~~v~~~~~---  530 (602)
                           ....-..++|+|+|++|..+ ...+.|+.++..  ++...  ..+.+.               -.....+++   
T Consensus       271 -----~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n  345 (433)
T 4hw6_A          271 -----TKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKN  345 (433)
T ss_dssp             -----CCSSCEEEEECTTSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEEC
T ss_pred             -----CCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEcc
Confidence                 01112368999999855544 456789997765  33221  122111               113556888   


Q ss_pred             ------cCCc-eEEEeeCCCcEEEeecCCCCceeeeecccc----cceEEEEe---cCCcEEEEEEC-CCCCeEEEeccC
Q psy12697        531 ------QSNT-SFASCSTDQHIHVCKLHSDKPVKSFEGHTT----GQLVHSYK---GTGGIFEVCWN-SRGDKVGASASD  595 (602)
Q Consensus       531 ------s~~~-~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~----~~~~~~~~---~~~~i~~l~~s-pdg~~l~~~~~d  595 (602)
                            .+++ .+++-...+.|+.++. ++ .+.++.+...    |..--...   .-.....|+++ ++|.++++-..+
T Consensus       346 ~~y~~dd~~g~lyvaD~~n~~I~~~~~-~G-~v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n  423 (433)
T 4hw6_A          346 EAYAGEEDEYDFYFCDRDSHTVRVLTP-EG-RVTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDN  423 (433)
T ss_dssp             GGGTTSSCCEEEEEEETTTTEEEEECT-TS-EEEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGG
T ss_pred             ccccccCCCCcEEEEECCCCEEEEECC-CC-CEEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCC
Confidence                  6777 5555556678888874 33 3333333211    00000000   01236789999 566655555556


Q ss_pred             CeEEe
Q psy12697        596 GSVFK  600 (602)
Q Consensus       596 g~v~i  600 (602)
                      +.|+.
T Consensus       424 ~rIr~  428 (433)
T 4hw6_A          424 HRVRK  428 (433)
T ss_dssp             TEEEE
T ss_pred             CEEEE
Confidence            66653

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=98.26  E-value=0.00044  Score=67.44  Aligned_cols=154  Identities=14%  Similarity=0.092  Sum_probs=94.3

Q ss_pred             ceEEEEECC-CCCeEEEeeCCceEEEEecCCceeEEEeeccCceEEEEeCCCCCCCCCCCCccccccccccCCcceEeeC
Q psy12697        142 PVYSVAFSP-DGKFLASGSFDKCVHIWSARTGQLVHSYKGTGGIFEVCWNSRGTPPNPPESMEVDASIEIPQSKATKLIG  220 (602)
Q Consensus       142 ~V~~~~~s~-d~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  220 (602)
                      ....++++| ++..|..+...+.|+.+|+.++.....                                         ..
T Consensus       138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~-----------------------------------------~~  176 (430)
T 3tc9_A          138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTV-----------------------------------------YS  176 (430)
T ss_dssp             CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEE-----------------------------------------EC
T ss_pred             CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEE-----------------------------------------ec
Confidence            457889998 455566665558888888877654321                                         11


Q ss_pred             CCcceEEEEEcCCCCEEEEeeC-CC---cEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEeeCC-CCCeE
Q psy12697        221 HESEVFICAWNPVKDFLASGSG-DS---TARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNN-NGSFL  295 (602)
Q Consensus       221 h~~~v~~~~~~~~~~~l~s~~~-dg---~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l  295 (602)
                      .......++|++++++|+.+.. ++   ...+|-...+.....   . ...           .......++++| ++.++
T Consensus       177 ~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~g~~~~~---~-~l~-----------~~~~p~giavdp~~g~ly  241 (430)
T 3tc9_A          177 GLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRESGFKVI---T-ELT-----------KGQNCNGAETHPINGELY  241 (430)
T ss_dssp             CCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGGGTSCSE---E-EEE-----------ECSSCCCEEECTTTCCEE
T ss_pred             CCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCCCceeee---e-eec-----------cCCCceEEEEeCCCCEEE
Confidence            3445778999999986665544 22   122222222222110   0 110           023467888999 67766


Q ss_pred             EEEeCCCeEEEEcCCCcceeecc--cccCCeEEEEEccCCCEEEEE-ecCCcEEEEeCC
Q psy12697        296 ATGSYDGYARIWTSDGSLKSTLG--QHKGPIFALKWNKRGNYILSA-GVDKTTIIWDAA  351 (602)
Q Consensus       296 ~~~~~dg~i~i~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~-~~dg~i~~wd~~  351 (602)
                      ++-..++.|..++.++.....+.  ........++|+|++++|+.+ ...+.|..++..
T Consensus       242 v~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d  300 (430)
T 3tc9_A          242 FNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYILRSDYD  300 (430)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred             EEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEEEEEeCC
Confidence            66667789999998865442221  122346789999999965554 456788887754

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=98.26  E-value=0.0013  Score=61.08  Aligned_cols=204  Identities=8%  Similarity=-0.026  Sum_probs=121.1

Q ss_pred             ceeEEeeCCCCCeE-EEEeCCCeEEEEcCCCcce--eecccccCCeEEEEEccCCCEEE-EEecCCcEEEEeCCCCceeE
Q psy12697        282 DVTSLDWNNNGSFL-ATGSYDGYARIWTSDGSLK--STLGQHKGPIFALKWNKRGNYIL-SAGVDKTTIIWDAASGQCEQ  357 (602)
Q Consensus       282 ~i~~~~~~~~~~~l-~~~~~dg~i~i~~~~~~~~--~~~~~~~~~i~~~~~~~~~~~l~-~~~~dg~i~~wd~~~~~~~~  357 (602)
                      ...+++|.+.+..| .+-...+.|..++.++...  ......-.....+++.+.+..|+ +-...+.|.++++.......
T Consensus        36 ~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~  115 (318)
T 3sov_A           36 DAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKV  115 (318)
T ss_dssp             EEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred             ccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEE
Confidence            46789999855444 4445568899998876531  22222224566788887555454 44556789999987543333


Q ss_pred             EeeeccCCeeeeeccCC-CeEEEee--CCCeEEEEEcCCCceeeEeccCCCCeEEEEECCCCCEEEEEE-CCCeEEEEeC
Q psy12697        358 QFSFHSAPALDVDWQSN-TSFASCS--TDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCS-DDMTLKIWSL  433 (602)
Q Consensus       358 ~~~~~~~~~~~~~~~~~-~~~~~~~--~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~iwd~  433 (602)
                      ...........++..|. +.++...  ..+.|...++............-.....++++|++..|..+. ..+.|..+|+
T Consensus       116 l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~  195 (318)
T 3sov_A          116 LFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNL  195 (318)
T ss_dssp             EECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred             EEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEEECCCCCccEEEEeccCCEEEEEECCCCEEEEEcC
Confidence            33233345667777763 5555544  357888888765433222333345678999999776666654 4678999987


Q ss_pred             CCCeeeEeeccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCc
Q psy12697        434 DKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQ  513 (602)
Q Consensus       434 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~~~~~  513 (602)
                      +...........                                  ......+++. .+.++.+-...+.|..+|..+|+
T Consensus       196 dG~~~~~~~~~~----------------------------------~~~P~glav~-~~~lywtd~~~~~V~~~~~~~G~  240 (318)
T 3sov_A          196 DGTNRQAVVKGS----------------------------------LPHPFALTLF-EDILYWTDWSTHSILACNKYTGE  240 (318)
T ss_dssp             TSCSCEEEECSC----------------------------------CSCEEEEEEE-TTEEEEEETTTTEEEEEETTTCC
T ss_pred             CCCceEEEecCC----------------------------------CCCceEEEEe-CCEEEEEecCCCeEEEEECCCCC
Confidence            642211111111                                  1122344443 23445555567889999988887


Q ss_pred             eeeeecc
Q psy12697        514 CEQQFSF  520 (602)
Q Consensus       514 ~~~~~~~  520 (602)
                      ....+..
T Consensus       241 ~~~~i~~  247 (318)
T 3sov_A          241 GLREIHS  247 (318)
T ss_dssp             SCEEEEC
T ss_pred             ceEEEeC
Confidence            6665543

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=98.24  E-value=0.012  Score=64.73  Aligned_cols=382  Identities=10%  Similarity=0.067  Sum_probs=183.7

Q ss_pred             cceeeeecccceeeeee-eccCCceEEEEECCC------CCeEEEeeC-CceEEEEecCCceeEEEeeccCceEEEEeCC
Q psy12697        120 LTLPLWDVERGECLNTL-TRHTEPVYSVAFSPD------GKFLASGSF-DKCVHIWSARTGQLVHSYKGTGGIFEVCWNS  191 (602)
Q Consensus       120 ~~i~vwd~~~~~~~~~l-~~h~~~V~~~~~s~d------~~~l~s~~~-d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~  191 (602)
                      +.+.++++..++..... ..-...|.|+++.|.      ++++|.|.. |++|+|+++.+.+.+........        
T Consensus       532 ~~l~~fel~~~~L~~~~~~~l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~--------  603 (1158)
T 3ei3_A          532 RALYYLQIHPQELRQISHTEMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGE--------  603 (1158)
T ss_dssp             TEEEEEEEETTEEEEEEEEECSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCSS--------
T ss_pred             CEEEEEEeeCCceeeecccCCCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECCCC--------
Confidence            34556666554322111 123568999999873      469999996 99999999987666543221100        


Q ss_pred             CCCCCCCCCCccccccccccCCcceEeeCCCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCccceEEEEEEec
Q psy12697        192 RGTPPNPPESMEVDASIEIPQSKATKLIGHESEVFICAWNPVKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCIS  271 (602)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~  271 (602)
                                                  .-...|.-+.+ ....+|..|-.||.+.-+.++....    .+.......  
T Consensus       604 ----------------------------~~p~si~l~~~-~~~~~L~igl~dG~l~~~~~d~~tg----~l~d~r~~~--  648 (1158)
T 3ei3_A          604 ----------------------------IIPRSILMTTF-ESSHYLLCALGDGALFYFGLNIETG----LLSDRKKVT--  648 (1158)
T ss_dssp             ----------------------------CCEEEEEEEEE-TTEEEEEEEETTSEEEEEEECTTTC----CEEEEEEEE--
T ss_pred             ----------------------------CCCcEEEEEEe-CCCcEEEEEeCCCeEEEEEEcCCCC----ccccceeEE--
Confidence                                        00111222233 2346888999999987776653211    011111111  


Q ss_pred             CCCcccCCCCceeEEeeCCCCCeEEEEeCCCeEEEEcCCCcceeecccccCCeE-EEEEccC--CCEEEEEecCCcEEEE
Q psy12697        272 KGGTEVPSNKDVTSLDWNNNGSFLATGSYDGYARIWTSDGSLKSTLGQHKGPIF-ALKWNKR--GNYILSAGVDKTTIIW  348 (602)
Q Consensus       272 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~i~-~~~~~~~--~~~l~~~~~dg~i~~w  348 (602)
                      .+      ..++.-..+...+..-+.+..+....++..++.....-. ....+. ...|+..  .+-++..+ ++.++|.
T Consensus       649 LG------~~pv~L~~~~~~~~~~V~a~s~rp~liy~~~~~l~~s~l-~~~~v~~~~~F~se~~~~g~v~~~-~~~LrI~  720 (1158)
T 3ei3_A          649 LG------TQPTVLRTFRSLSTTNVFACSDRPTVIYSSNHKLVFSNV-NLKEVNYMCPLNSDGYPDSLALAN-NSTLTIG  720 (1158)
T ss_dssp             CC------SSCCEEEEEESSSCEEEEEESSSCEEEEESSSSEEEEEB-SSSCCCEEEEECCSSSTTEEEEEC-SSCEEEE
T ss_pred             cC------CCceEEEEEeeCCceeEEEECCCCEEEEEcCCceEEecc-ChHHhceEeccCcccCCCcEEEEc-CCceEEE
Confidence            00      123333333333333333333444444443443322211 112232 3334322  23355444 4558877


Q ss_pred             eCCCCce--eEEeeeccCCeeeeeccCCC-eEEEee--------------------------------------------
Q psy12697        349 DAASGQC--EQQFSFHSAPALDVDWQSNT-SFASCS--------------------------------------------  381 (602)
Q Consensus       349 d~~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~--------------------------------------------  381 (602)
                      .+.....  .+.+.. ...+..++++|.. .++++.                                            
T Consensus       721 ~i~~~~~~~~~~ipL-~~Tprri~y~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  799 (1158)
T 3ei3_A          721 TIDEIQKLHIRTVPL-YESPRKICYQEVSQCFGVLSSRIEVQDTSGGTTALRPSASTQALSSSVSSSKLFSSSTAPHETS  799 (1158)
T ss_dssp             EECCSSSEEEEEEEC-SSEEEEEEEEGGGTEEEEEEEEEEEECSSSSEEESSCCHHHHCSEEEECCCCCC----------
T ss_pred             EecccCCeeEEEEeC-CCCceEEEEcCCCCEEEEEEEeccccccccccchhhhhhhhhhhhhcccccccccccccCchhh
Confidence            6643322  122222 1234444444432 222111                                            


Q ss_pred             -----CCCeEEEEEcCCCceeeEeccCC-CCeEEEE---ECCC-CCEEEEEE----------CCCeEEEEeCCCCeeeEe
Q psy12697        382 -----TDQHIHVCKLHSDKPVKSFEGHT-NEVNAIK---WDPQ-GLLLASCS----------DDMTLKIWSLDKDNCVHD  441 (602)
Q Consensus       382 -----~~~~i~i~d~~~~~~~~~~~~~~-~~i~~~~---~~~~-~~~l~~~~----------~dg~i~iwd~~~~~~~~~  441 (602)
                           ..+.|++.|..+.+.+..+.-.. ..+.+++   |..+ ..+|++|.          ..|.|.+|++..++....
T Consensus       800 ~g~~~~~s~i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv  879 (1158)
T 3ei3_A          800 FGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTV  879 (1158)
T ss_dssp             CCCEEEEEEEEEEETTTCCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEE
T ss_pred             cCCceeeEEEEEEeCCCCeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEE
Confidence                 11346777777776655544322 2344444   3322 46788876          246777777753221111


Q ss_pred             eccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCceee-eecc
Q psy12697        442 LQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQ-QFSF  520 (602)
Q Consensus       442 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~-~~~~  520 (602)
                      .+                                 ...++++++++-- +|+++++.  ..+|++|++...+.+. ....
T Consensus       880 ~~---------------------------------~~v~g~v~al~~~-~g~Lla~i--g~~l~vy~l~~~~~L~~~~~~  923 (1158)
T 3ei3_A          880 AE---------------------------------KEVKGAVYSMVEF-NGKLLASI--NSTVRLYEWTTEKELRTECNH  923 (1158)
T ss_dssp             EE---------------------------------EEESSCEEEEEEE-TTEEEEEE--TTEEEEEEECTTSCEEEEEEE
T ss_pred             EE---------------------------------EEcCCcCEEEeee-CCEEEEEc--CCEEEEEECCCCceEEEEeec
Confidence            00                                 0124455555432 45444433  5789999998665443 1111


Q ss_pred             cCCCeeEeeecCCc-eEEEeeCCCcEEEeecCCCC-ceeeeecccccceEEEEecCCcEEEEEECCCCCeEEEeccCCeE
Q psy12697        521 HSAPALDVDWQSNT-SFASCSTDQHIHVCKLHSDK-PVKSFEGHTTGQLVHSYKGTGGIFEVCWNSRGDKVGASASDGSV  598 (602)
Q Consensus       521 ~~~~v~~~~~s~~~-~l~~~~~d~~i~iw~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~v  598 (602)
                      + ..+..+.....+ ++++|..-..|.++..+... .+..+....         ....++++.|--+ ..++.+..+|.+
T Consensus       924 ~-~~i~~~~l~~~~~~I~vgD~~~Sv~~~~y~~~~~~L~~~a~D~---------~~~~vta~~~ld~-~t~l~aD~~gNl  992 (1158)
T 3ei3_A          924 Y-NNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDF---------NPNWMSAVEILDD-DNFLGAENAFNL  992 (1158)
T ss_dssp             C-CCSCEEEEEEETTEEEEEESSBCEEEEEEETTTTEEEEEEECC---------SCBCEEEEEEEET-TEEEEEETTSEE
T ss_pred             c-ccEEEEEEeccCCEEEEEEhhheEEEEEEEcCCCeEEEEEeec---------ccccEEEEEEEcc-CcEEEEcCCCcE
Confidence            1 123322232234 88888888888776643221 111111110         1244677777544 466778888887


Q ss_pred             Ee
Q psy12697        599 FK  600 (602)
Q Consensus       599 ~i  600 (602)
                      .+
T Consensus       993 ~v  994 (1158)
T 3ei3_A          993 FV  994 (1158)
T ss_dssp             EE
T ss_pred             EE
Confidence            65

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=98.14  E-value=0.0037  Score=65.51  Aligned_cols=226  Identities=12%  Similarity=0.017  Sum_probs=132.8

Q ss_pred             CCCeEEEEcCCCcceeecccccCCeEEEEEccCCCEEEEE-ecCCcEEEEeCCCC----ceeEEeeeccCCeeee--ecc
Q psy12697        300 YDGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSA-GVDKTTIIWDAASG----QCEQQFSFHSAPALDV--DWQ  372 (602)
Q Consensus       300 ~dg~i~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~~wd~~~~----~~~~~~~~~~~~~~~~--~~~  372 (602)
                      ....|+..++.+.....+......+..++|.+....|+.+ ...+.|+.+++...    .....+.........+  .|.
T Consensus       402 n~~~Ir~i~l~~~~~~~l~~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~  481 (791)
T 3m0c_C          402 NRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWI  481 (791)
T ss_dssp             CBSSEEEECTTSCCCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETT
T ss_pred             cccceeEeeccCCcceeeecCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeec
Confidence            3456777887765554454556678899999866666544 44677888887653    2222222122233344  444


Q ss_pred             CCCeEEEeeCCCeEEEEEcCCCceeeEeccCCCCeEEEEECCCCCEEEEEEC-C-CeEEEEeCCCCeeeEeeccccccEE
Q psy12697        373 SNTSFASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSD-D-MTLKIWSLDKDNCVHDLQAHNKEIY  450 (602)
Q Consensus       373 ~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d-g~i~iwd~~~~~~~~~~~~~~~~i~  450 (602)
                      .+..+++-...+.|.+.++........+.........|+++|.+.+|+.... + +.|...++........+..      
T Consensus       482 ~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~------  555 (791)
T 3m0c_C          482 HSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTE------  555 (791)
T ss_dssp             TTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECS------
T ss_pred             CCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEeC------
Confidence            4456667677889999999866544444444556899999997666666553 2 6788777754322111111      


Q ss_pred             EEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEe-CCCeEEEEeCCCCceeeeeccc--CCCeeE
Q psy12697        451 TIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAG-VDKTTIIWDAASGQCEQQFSFH--SAPALD  527 (602)
Q Consensus       451 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~--~~~v~~  527 (602)
                                                  .-.....|++++.+..|+.+. ..+.|...++........+...  -.....
T Consensus       556 ----------------------------~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~g  607 (791)
T 3m0c_C          556 ----------------------------NIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFS  607 (791)
T ss_dssp             ----------------------------SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEE
T ss_pred             ----------------------------CCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCE
Confidence                                        123456778886666665554 4568999998644433333321  123456


Q ss_pred             eeecCCceEEEeeCCCcEEEeecCCCCceeee
Q psy12697        528 VDWQSNTSFASCSTDQHIHVCKLHSDKPVKSF  559 (602)
Q Consensus       528 ~~~s~~~~l~~~~~d~~i~iw~~~~~~~~~~~  559 (602)
                      |++..+..+++-...+.|...+..+++.+..+
T Consensus       608 lav~~~~lYwtD~~~~~I~~~dk~tG~~~~~l  639 (791)
T 3m0c_C          608 LAVFEDKVFWTDIINEAIFSANRLTGSDVNLL  639 (791)
T ss_dssp             EEEETTEEEEEETTTTEEEEEETTTCCCCEEE
T ss_pred             EEEeCCEEEEEECCCCEEEEEeCCCCcceEEe
Confidence            66654434445556677888887777655444

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=98.03  E-value=0.0021  Score=59.20  Aligned_cols=191  Identities=12%  Similarity=0.194  Sum_probs=121.1

Q ss_pred             CCCEEEEEecCCcEEEEeCCCCceeEEeeeccCCeeeeeccCCCe-------EE--EeeC--CCeEEEEEcC-CCceeeE
Q psy12697        332 RGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTS-------FA--SCST--DQHIHVCKLH-SDKPVKS  399 (602)
Q Consensus       332 ~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~--~~~~--~~~i~i~d~~-~~~~~~~  399 (602)
                      ....++.....+-+.+||+ +|+.++.+..  ..+..+...++-.       ++  +.-.  +++|.+|++. ....+..
T Consensus        39 ~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~~  115 (355)
T 3amr_A           39 QNSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQS  115 (355)
T ss_dssp             GGCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEEE
T ss_pred             CccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCceee
Confidence            4456776777889999999 8888887754  4455555544321       33  3333  5789999774 2223444


Q ss_pred             ecc------CC-CCeEEEEE--CCC-CC-EEEEEECCCeEEEEeCC---CC----eeeEeeccccccEEEEEECCCCCCC
Q psy12697        400 FEG------HT-NEVNAIKW--DPQ-GL-LLASCSDDMTLKIWSLD---KD----NCVHDLQAHNKEIYTIKWSPTGPET  461 (602)
Q Consensus       400 ~~~------~~-~~i~~~~~--~~~-~~-~l~~~~~dg~i~iwd~~---~~----~~~~~~~~~~~~i~~~~~~~~~~~~  461 (602)
                      +..      .. ..+..+|+  +|. ++ ++++...+|.+..|++.   .+    +.++++..                 
T Consensus       116 i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l-----------------  178 (355)
T 3amr_A          116 MTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKM-----------------  178 (355)
T ss_dssp             CSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC-----------------
T ss_pred             ccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecC-----------------
Confidence            421      11 55777888  774 44 68888889999999883   22    33333322                 


Q ss_pred             CCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCCCeEEEEeCC-----CCceeeeec-cc-CCCeeEeee--cC
Q psy12697        462 SNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAA-----SGQCEQQFS-FH-SAPALDVDW--QS  532 (602)
Q Consensus       462 ~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~~-----~~~~~~~~~-~~-~~~v~~~~~--s~  532 (602)
                                        .+.+..+...+....|..+-++.-|..++.+     +++.+..+. ++ ...+..+++  .+
T Consensus       179 ------------------gsq~EgcvvDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~  240 (355)
T 3amr_A          179 ------------------NSQTEGMAADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAA  240 (355)
T ss_dssp             ------------------SSCEEEEEEETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECG
T ss_pred             ------------------CCCcceEEEcCCCCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecC
Confidence                              1345677777778889999998777777755     344555442 12 235777777  45


Q ss_pred             Cc--eEEEee-CCCcEEEeecC-CCCceeeee
Q psy12697        533 NT--SFASCS-TDQHIHVCKLH-SDKPVKSFE  560 (602)
Q Consensus       533 ~~--~l~~~~-~d~~i~iw~~~-~~~~~~~~~  560 (602)
                      ++  +|++++ .++++.+||.. +.+.+..+.
T Consensus       241 ~g~gyLivSsQG~~s~~Vydr~~~~~~vg~f~  272 (355)
T 3amr_A          241 DGKGYLMASSQGNSSYAIYDRQGKNKYVADFR  272 (355)
T ss_dssp             GGCEEEEEEEGGGTEEEEEESSTTCCEEEEEE
T ss_pred             CCCEEEEEEcCCCCEEEEEECCCCCcEEEEEE
Confidence            44  455444 67899999996 566666664

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=98.01  E-value=7e-05  Score=77.96  Aligned_cols=227  Identities=12%  Similarity=0.015  Sum_probs=127.5

Q ss_pred             CCCeEEEEcCCCcceeecccccCCeEEEEEccCCCEEEEEe-cCCcEEEEeCCC----CceeEEeeeccCCeeeeecc--
Q psy12697        300 YDGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAG-VDKTTIIWDAAS----GQCEQQFSFHSAPALDVDWQ--  372 (602)
Q Consensus       300 ~dg~i~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~~wd~~~----~~~~~~~~~~~~~~~~~~~~--  372 (602)
                      ..+.|+..++.+.....+......+..++|.+.+..|+.+. ..+.|..+++..    ......+.........+++.  
T Consensus       384 ~~~~I~~id~~~~~~~~~~~~~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~  463 (699)
T 1n7d_A          384 NRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWI  463 (699)
T ss_dssp             CTTC-CEECTTSCCEECCSCCCTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCS
T ss_pred             CccceEEEeCCCCcceeeeccCcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEee
Confidence            34567788877655444444445677899998777776654 457888888875    22221121111223344444  


Q ss_pred             CCCeEEEeeCCCeEEEEEcCCCceeeEeccCCCCeEEEEECCCCCEEEEEEC-C-CeEEEEeCCCCeeeEeeccccccEE
Q psy12697        373 SNTSFASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSD-D-MTLKIWSLDKDNCVHDLQAHNKEIY  450 (602)
Q Consensus       373 ~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d-g~i~iwd~~~~~~~~~~~~~~~~i~  450 (602)
                      .+..+++-...+.|.++++........+.........++++|.+.+|+.+.. . +.|..+++.... ...+..      
T Consensus       464 ~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~-~~~l~~------  536 (699)
T 1n7d_A          464 HSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD-IYSLVT------  536 (699)
T ss_dssp             SSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCC-CCEESC------
T ss_pred             CCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCC-eeEEEe------
Confidence            3444555556788999998765544333333345678899996655554432 2 566666654321 111100      


Q ss_pred             EEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEE-EEeCCCeEEEEeCCCCceeeeecc--cCCCeeE
Q psy12697        451 TIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYIL-SAGVDKTTIIWDAASGQCEQQFSF--HSAPALD  527 (602)
Q Consensus       451 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~-s~~~dg~i~iwd~~~~~~~~~~~~--~~~~v~~  527 (602)
                                                 ..-.....|+|+|++..|. +-...+.|.++|+........+..  .......
T Consensus       537 ---------------------------~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~g  589 (699)
T 1n7d_A          537 ---------------------------ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFS  589 (699)
T ss_dssp             ---------------------------SSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCEEECCCSSSCSSCCC
T ss_pred             ---------------------------CCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCceEEEEecCCcCCCceE
Confidence                                       0112345688888755554 445567899999874332222221  1123445


Q ss_pred             eeecCCceEEEeeCCCcEEEeecCCCCceeeee
Q psy12697        528 VDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFE  560 (602)
Q Consensus       528 ~~~s~~~~l~~~~~d~~i~iw~~~~~~~~~~~~  560 (602)
                      +++..+..+++....+.|..++..+++.+..+.
T Consensus       590 lavd~~~lywtd~~~~~V~~~d~~~G~~~~~i~  622 (699)
T 1n7d_A          590 LAVFEDKVFWTDIINEAIFSANRLTGSDVNLLA  622 (699)
T ss_dssp             CEEETTEEEEECSTTTCEEEEETTTEEEEECCC
T ss_pred             eEEECCEEEEEeCCCCeEEEEEccCCCceEEee
Confidence            666555555566677889999877766555543

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=98.00  E-value=0.02  Score=58.60  Aligned_cols=310  Identities=9%  Similarity=0.002  Sum_probs=173.1

Q ss_pred             cceEEEEEcCCCCEEEEe-eCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEeeCCCCCeE-EEEeC
Q psy12697        223 SEVFICAWNPVKDFLASG-SGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFL-ATGSY  300 (602)
Q Consensus       223 ~~v~~~~~~~~~~~l~s~-~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l-~~~~~  300 (602)
                      ..+..++|++.+..|+.+ ..++.|..++++.....      ...    ..      .......+++.+.+..| ++-..
T Consensus        37 ~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~------~v~----~~------g~~~P~GlAvD~~~~~LY~tD~~  100 (628)
T 4a0p_A           37 KEASALDFDVTDNRIYWTDISLKTISRAFMNGSALE------HVV----EF------GLDYPEGMAVDWLGKNLYWADTG  100 (628)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE------EEE----CS------SCSCCCEEEEETTTTEEEEEETT
T ss_pred             CceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcE------EEE----eC------CCCCcceEEEEeCCCEEEEEECC
Confidence            457789999976665544 45788888887654221      110    00      01345678887755545 44455


Q ss_pred             CCeEEEEcCCCcceeecc-cccCCeEEEEEccCCCEEEEEec--CCcEEEEeCCCCceeEEeeeccCCeeeeeccCC-Ce
Q psy12697        301 DGYARIWTSDGSLKSTLG-QHKGPIFALKWNKRGNYILSAGV--DKTTIIWDAASGQCEQQFSFHSAPALDVDWQSN-TS  376 (602)
Q Consensus       301 dg~i~i~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~--dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~-~~  376 (602)
                      .+.|.+.+++|.....+. ..-.....+++.|....|+.+..  .+.|...++......... ..-.....+++.+. +.
T Consensus       101 ~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~l~-~~~~~P~GlalD~~~~~  179 (628)
T 4a0p_A          101 TNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLV-PNVGRANGLTIDYAKRR  179 (628)
T ss_dssp             TTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEE-CSCSSEEEEEEETTTTE
T ss_pred             CCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEEEE-CCCCCcceEEEccccCE
Confidence            688999999876654443 34456789999986666666553  467777777644332222 23345667777764 44


Q ss_pred             EE-EeeCCCeEEEEEcCCCceeeEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeeeEeeccccccEEEEE-E
Q psy12697        377 FA-SCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHDLQAHNKEIYTIK-W  454 (602)
Q Consensus       377 ~~-~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~-~  454 (602)
                      +. +-...+.|..+|+..... ..+.........+++.. +.++++-...+.|...|..+++....+.........+. +
T Consensus       180 LY~aD~~~~~I~~~d~dG~~~-~v~~~~l~~P~glav~~-~~ly~tD~~~~~I~~~dk~tg~~~~~l~~~~~~p~~i~v~  257 (628)
T 4a0p_A          180 LYWTDLDTNLIESSNMLGLNR-EVIADDLPHPFGLTQYQ-DYIYWTDWSRRSIERANKTSGQNRTIIQGHLDYVMDILVF  257 (628)
T ss_dssp             EEEEETTTTEEEEEETTSCSC-EEEEECCSCEEEEEEET-TEEEEEETTTTEEEEEETTTCCSCEEEECSCCSCCEEEEE
T ss_pred             EEEEECCCCEEEEEcCCCCce-EEeeccCCCceEEEEEC-CEEEEecCCCCEEEEEECCCCCceEEEecCCCCcceeeee
Confidence            44 445567899999876544 33333444566888865 44445555578898888766654333322111111111 1


Q ss_pred             C---------------------------------CCCCCCCCCCcc-------eeeee-----eeccC-----------C
Q psy12697        455 S---------------------------------PTGPETSNPNMS-------LIFIL-----KSTLG-----------Q  478 (602)
Q Consensus       455 ~---------------------------------~~~~~~~~~~~~-------~~~~~-----~~~~~-----------~  478 (602)
                      +                                 |.+..+......       ..+..     ...+.           .
T Consensus       258 ~~~~q~~~n~C~~~ng~C~~~C~~~~~~~~~C~C~~g~~l~~d~~~C~~~~~~Ll~s~~~~i~~i~l~~~~~~~~~l~~~  337 (628)
T 4a0p_A          258 HSSRQSGWNECASSNGHCSHLCLAVPVGGFVCGCPAHYSLNADNRTCSAPTTFLLFSQKSAINRMVIDEQQSPDIILPIH  337 (628)
T ss_dssp             CGGGSCCCCTTTTTGGGCSSEEEEETTTEEEEECSTTCEECTTSSCEECCSSEEEEEETTEEEEECCCTTCCCCEECCCT
T ss_pred             eecccccceEeccCCCCcchhhhcCCCCCeeEEcCCCcEecccCCcCccccceeeeeccceEEEEecccccCceEEEEeh
Confidence            1                                 111111110000       00000     00000           1


Q ss_pred             ccCCeEEEEEccCCCEEEEEe-CCCeEEEEeCCCCceeeeecc------cCCCeeEeeecCCc--eEEEeeCCCcEEEee
Q psy12697        479 HKGPIFALKWNKRGNYILSAG-VDKTTIIWDAASGQCEQQFSF------HSAPALDVDWQSNT--SFASCSTDQHIHVCK  549 (602)
Q Consensus       479 ~~~~v~~i~~s~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~------~~~~v~~~~~s~~~--~l~~~~~d~~i~iw~  549 (602)
                      .-..+..++|.+.++.|..+. ..+.|+.++.........+..      ....+..+++...+  .+.+-+..+.|.+.+
T Consensus       338 ~~~~~~~ld~d~~~~~iy~sD~~~~~I~r~~~~g~~~~~v~~~~~~~~~~~~~p~glAvD~~~~nLY~td~~~~~I~v~~  417 (628)
T 4a0p_A          338 SLRNVRAIDYDPLDKQLYWIDSRQNMIRKAQEDGSQGFTVVVSSVPSQNLEIQPYDLSIDIYSRYIYWTCEATNVINVTR  417 (628)
T ss_dssp             TCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC--------CCCEEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             hcCCceEEEEecCCCeEEEEecCcceEEEEEcCCCCceEEEEcccccccccCCcceEEeeccCCeEEEEcCCCCEEEEEE
Confidence            124467888988666655544 467788888764333233322      22357788888875  445556678888888


Q ss_pred             cC
Q psy12697        550 LH  551 (602)
Q Consensus       550 ~~  551 (602)
                      ++
T Consensus       418 ~~  419 (628)
T 4a0p_A          418 LD  419 (628)
T ss_dssp             TT
T ss_pred             CC
Confidence            75

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=97.99  E-value=0.0048  Score=56.78  Aligned_cols=193  Identities=15%  Similarity=0.198  Sum_probs=121.3

Q ss_pred             CCCeEEEEeCCCeEEEEcCCCcceeecccccCCeEEEEEccC----CCE--EE-EEe-c--CCcEEEEeC--CCCceeEE
Q psy12697        291 NGSFLATGSYDGYARIWTSDGSLKSTLGQHKGPIFALKWNKR----GNY--IL-SAG-V--DKTTIIWDA--ASGQCEQQ  358 (602)
Q Consensus       291 ~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~i~~~~~~~~----~~~--l~-~~~-~--dg~i~~wd~--~~~~~~~~  358 (602)
                      ...+++.....+-+.+||++|+.+..+..  +.++.+..-|+    |+.  ++ +.. .  +++|.+|++  .+++ +..
T Consensus        39 ~~s~ii~t~k~~gL~Vydl~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~-l~~  115 (355)
T 3amr_A           39 QNSKLITTNKKSGLVVYSLDGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT-LQS  115 (355)
T ss_dssp             GGCEEEEEETTTEEEEEETTSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC-EEE
T ss_pred             CccEEEEEcCCCCEEEEcCCCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc-eee
Confidence            34566666777899999999999888754  56777766653    222  33 333 3  578999966  3443 443


Q ss_pred             eee------cc-CCeeeeec--cCC-C--eEEEeeCCCeEEEEEcC-------CCceeeEeccCCCCeEEEEECCCCCEE
Q psy12697        359 FSF------HS-APALDVDW--QSN-T--SFASCSTDQHIHVCKLH-------SDKPVKSFEGHTNEVNAIKWDPQGLLL  419 (602)
Q Consensus       359 ~~~------~~-~~~~~~~~--~~~-~--~~~~~~~~~~i~i~d~~-------~~~~~~~~~~~~~~i~~~~~~~~~~~l  419 (602)
                      +..      .. ..+..++.  ++. +  .+++...+|.+..|++.       +.+.++++.. .+.+..+..++....|
T Consensus       116 i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l-gsq~EgcvvDd~~g~L  194 (355)
T 3amr_A          116 MTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKM-NSQTEGMAADDEYGRL  194 (355)
T ss_dssp             CSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC-SSCEEEEEEETTTTEE
T ss_pred             ccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecC-CCCcceEEEcCCCCeE
Confidence            311      11 34455555  553 3  36777788999999883       2355666664 3578899999988999


Q ss_pred             EEEECCCeEEEEeCCC-----CeeeEeeccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEE--ccCC
Q psy12697        420 ASCSDDMTLKIWSLDK-----DNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKW--NKRG  492 (602)
Q Consensus       420 ~~~~~dg~i~iwd~~~-----~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~--s~~~  492 (602)
                      +.+-++.-|..++.+.     ++.+..+..                                ..-...+..|++  .+++
T Consensus       195 yv~eEd~GIw~~da~p~~~~~~~~v~~~~~--------------------------------g~l~aDvEGLai~~~~~g  242 (355)
T 3amr_A          195 YIAEEDEAIWKFSAEPDGGSNGTVIDRADG--------------------------------RHLTRDIEGLTIYYAADG  242 (355)
T ss_dssp             EEEETTTEEEEEECSTTSCSCCEEEEEBSS--------------------------------SSBCSCEEEEEEEECGGG
T ss_pred             EEecccceEEEEeCCcCCCCCceEEEEecC--------------------------------CccccCcceEEEEecCCC
Confidence            9999986666666441     222222210                                011224555655  4455


Q ss_pred             C-EEEEEe-CCCeEEEEeCC-CCceeeeec
Q psy12697        493 N-YILSAG-VDKTTIIWDAA-SGQCEQQFS  519 (602)
Q Consensus       493 ~-~l~s~~-~dg~i~iwd~~-~~~~~~~~~  519 (602)
                      + ||++++ .+.+..+||.. +.+.+..|.
T Consensus       243 ~gyLivSsQG~~s~~Vydr~~~~~~vg~f~  272 (355)
T 3amr_A          243 KGYLMASSQGNSSYAIYDRQGKNKYVADFR  272 (355)
T ss_dssp             CEEEEEEEGGGTEEEEEESSTTCCEEEEEE
T ss_pred             CEEEEEEcCCCCEEEEEECCCCCcEEEEEE
Confidence            5 666666 56799999996 677777664

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=97.97  E-value=0.012  Score=55.54  Aligned_cols=234  Identities=15%  Similarity=0.177  Sum_probs=118.0

Q ss_pred             CceEEEEECCCCCeEEEeeCCceEEEEecCCceeEEEeeccCceEEEEeCCCCCCCCCCCCccccccccccCCcceEeeC
Q psy12697        141 EPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKGTGGIFEVCWNSRGTPPNPPESMEVDASIEIPQSKATKLIG  220 (602)
Q Consensus       141 ~~V~~~~~s~d~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  220 (602)
                      .....++|.|||+++++ ..++.|.+++  +++.. .+...                                  .....
T Consensus        31 ~~P~~ia~~pdG~l~V~-e~~g~I~~i~--~g~~~-~~~~~----------------------------------~v~~~   72 (352)
T 2ism_A           31 EVPWALAFLPDGGMLIA-ERPGRIRLFR--EGRLS-TYAEL----------------------------------SVYHR   72 (352)
T ss_dssp             SCEEEEEECTTSCEEEE-ETTTEEEEEE--TTEEE-EEEEC----------------------------------CCCCS
T ss_pred             CCceEEEEcCCCeEEEE-eCCCeEEEEE--CCCcc-Eeecc----------------------------------eEeec
Confidence            45679999999996555 5669999988  44321 11000                                  00011


Q ss_pred             CCcceEEEEEcCC---CCEEEEeeC-C-----CcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEeeCCC
Q psy12697        221 HESEVFICAWNPV---KDFLASGSG-D-----STARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNN  291 (602)
Q Consensus       221 h~~~v~~~~~~~~---~~~l~s~~~-d-----g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  291 (602)
                      .......++|+|+   +..|+.+.. .     +.|..++......   ......... .....   ........++|.|+
T Consensus        73 g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~r~~~~~~~~---~~~~~l~~~-~p~~~---~~~h~~~~l~~~pd  145 (352)
T 2ism_A           73 GESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVVRLRHLGERG---VLDRVVLDG-IPARP---HGLHSGGRIAFGPD  145 (352)
T ss_dssp             TTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEEEEEECSSCE---EEEEEEEEE-ECCCT---TCCCCCCCEEECTT
T ss_pred             CCCCceeEEECCCCCCCCEEEEEEecCCCCCccEEEEEEeCCCCc---CceEEEEEe-CCCCC---CCCcCCceEEECCC
Confidence            2345788999998   555554433 2     5677777653311   011111111 11000   01122368999999


Q ss_pred             CCeEEEEeC-------------CCeEEEEcCCCcce-------------eec-ccccCCeEEEEEcc-CCCEEEEEecCC
Q psy12697        292 GSFLATGSY-------------DGYARIWTSDGSLK-------------STL-GQHKGPIFALKWNK-RGNYILSAGVDK  343 (602)
Q Consensus       292 ~~~l~~~~~-------------dg~i~i~~~~~~~~-------------~~~-~~~~~~i~~~~~~~-~~~~l~~~~~dg  343 (602)
                      |.+.++.+.             .|.|.-++.++...             ..+ .++ .....++|+| +++.+++-....
T Consensus       146 G~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~npf~~~~~~~~~i~a~G~-rnp~g~a~d~~~g~l~v~d~g~~  224 (352)
T 2ism_A          146 GMLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGNPFLGRRGARPEVYSLGH-RNPQGLAWHPKTGELFSSEHGPS  224 (352)
T ss_dssp             SCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTCTTTTCTTSCTTEEEECC-SEECCCEECTTTCCEEEEEECC-
T ss_pred             CCEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCCcccCCCCCCccEEEEcC-CCcccEEEECCCCCEEEEEcCCC
Confidence            976665432             25677777665211             111 112 2356788999 565444432222


Q ss_pred             c--------EEEEeCCCCc------------------eeEEeeeccCCeeeeeccCCCeEEEeeCCCeEEEEEcCCCce-
Q psy12697        344 T--------TIIWDAASGQ------------------CEQQFSFHSAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKP-  396 (602)
Q Consensus       344 ~--------i~~wd~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~-  396 (602)
                      .        |.+.  ..+.                  ....+ ........+++..+..+++....+.|...++..... 
T Consensus       225 ~~~~~~~dei~~i--~~G~nyGwp~~~g~~~~~~~~~p~~~~-~~~~ap~G~~~~~G~l~v~~~~~~~v~~v~~~~~~~~  301 (352)
T 2ism_A          225 GEQGYGHDEVNLI--VPGGNYGWPRVVGRGNDPRYRDPLYFW-PQGFPPGNLAFFRGDLYVAGLRGQALLRLVLEGERGR  301 (352)
T ss_dssp             -----CCCEEEEE--CTTCBCCTTTCCSCCCCTTSCCCSEEC-TTCCCEEEEEEETTEEEEEETTTTEEEEEEEEEETTE
T ss_pred             CCCCCCCeEEEEe--ccCCcCCCCcccCCCCCCCCcCCeEec-CCCCCCcceEEECCEEEEEECCCCEEEEEEECCCCcc
Confidence            2        3332  2221                  11111 111223445554444444444566777777654331 


Q ss_pred             -----eeEeccCCCCeEEEEECCCCCEEEEEE
Q psy12697        397 -----VKSFEGHTNEVNAIKWDPQGLLLASCS  423 (602)
Q Consensus       397 -----~~~~~~~~~~i~~~~~~~~~~~l~~~~  423 (602)
                           ...+......+..+++.|||.++++..
T Consensus       302 ~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~~~  333 (352)
T 2ism_A          302 WRVLRVETALSGFGRLREVQVGPDGALYVTTS  333 (352)
T ss_dssp             EEEEEEEEEEESSCCEEEEEECTTSCEEEEEC
T ss_pred             eeecchheecccCCCeeEEEECCCCcEEEEEe
Confidence                 122222335789999999998776654

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=97.94  E-value=0.012  Score=57.50  Aligned_cols=253  Identities=9%  Similarity=0.052  Sum_probs=138.7

Q ss_pred             ceeEEeeCCC-CCeEE-EEeCCCeEEEEcCCCcceeecccc----cCCeEEEEE-------ccCCCEEEEEecCC-----
Q psy12697        282 DVTSLDWNNN-GSFLA-TGSYDGYARIWTSDGSLKSTLGQH----KGPIFALKW-------NKRGNYILSAGVDK-----  343 (602)
Q Consensus       282 ~i~~~~~~~~-~~~l~-~~~~dg~i~i~~~~~~~~~~~~~~----~~~i~~~~~-------~~~~~~l~~~~~dg-----  343 (602)
                      ....|+|+|. ...|+ +-...+.|++.|.....+..+...    ......++|       ++++++|+++...+     
T Consensus       140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~  219 (496)
T 3kya_A          140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDE  219 (496)
T ss_dssp             SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGG
T ss_pred             CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCccc
Confidence            4678999983 44444 444457799999887666554322    235889999       99999777776554     


Q ss_pred             --cEEEEeCCC-Ccee-----EEeeeccCCeeeeeccC-CCe-EEEeeCCCeEEEEEcC-------CCce----------
Q psy12697        344 --TTIIWDAAS-GQCE-----QQFSFHSAPALDVDWQS-NTS-FASCSTDQHIHVCKLH-------SDKP----------  396 (602)
Q Consensus       344 --~i~~wd~~~-~~~~-----~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~i~i~d~~-------~~~~----------  396 (602)
                        .+.+++... +...     ..+.. ......++..| ++. +++-..++.|+.+|+.       ++..          
T Consensus       220 ~~~V~~i~r~~~G~~~~~~~~~~v~~-~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g  298 (496)
T 3kya_A          220 SPSVYIIKRNADGTFDDRSDIQLIAA-YKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPN  298 (496)
T ss_dssp             EEEEEEEECCTTSCCSTTSCEEEEEE-ESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTT
T ss_pred             CceEEEEecCCCCceeecccceeecc-CCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeeccccccccc
Confidence              255665333 2221     22221 22345566677 444 4555677889999987       4443          


Q ss_pred             -eeE-ec-cCCCCeEEEEECCCCCEEEEE-ECCCeEEEEeCCC--Ceee--EeeccccccEEEEEECCCCCCCCCCCcce
Q psy12697        397 -VKS-FE-GHTNEVNAIKWDPQGLLLASC-SDDMTLKIWSLDK--DNCV--HDLQAHNKEIYTIKWSPTGPETSNPNMSL  468 (602)
Q Consensus       397 -~~~-~~-~~~~~i~~~~~~~~~~~l~~~-~~dg~i~iwd~~~--~~~~--~~~~~~~~~i~~~~~~~~~~~~~~~~~~~  468 (602)
                       ... +. +.......++|+|+|+.|..+ +..+.|+.++...  +...  ..+.+..+.   -.+. ++..        
T Consensus       299 ~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~---~G~~-DG~~--------  366 (496)
T 3kya_A          299 TFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQ---SGYR-DDVG--------  366 (496)
T ss_dssp             TEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTB---CCCB-CCBG--------
T ss_pred             ccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCC---Cccc-CCcc--------
Confidence             111 11 223456899999999965555 4567888866532  2210  111111000   0000 1100        


Q ss_pred             eeeeeeccCCccCCeE-EEEEc-------cCCCEEEEEeCCCeEEEEeCCCCceeeeeccc-------------------
Q psy12697        469 IFILKSTLGQHKGPIF-ALKWN-------KRGNYILSAGVDKTTIIWDAASGQCEQQFSFH-------------------  521 (602)
Q Consensus       469 ~~~~~~~~~~~~~~v~-~i~~s-------~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-------------------  521 (602)
                             ....-.... .++..       ++|.++++-....+|+.++ .+|. +.++.+.                   
T Consensus       367 -------~~a~f~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~-~~G~-v~TiaG~g~~~~~~~~~~~G~~dG~~  437 (496)
T 3kya_A          367 -------TEARMNNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVT-PEGI-VSTYAGRGASTSLADGNQWGTDDGDL  437 (496)
T ss_dssp             -------GGCBCSSEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEEC-TTCB-EEEEEESCTTHHHHHSCSCCCCCEET
T ss_pred             -------cccccCCCeEEEEEccccccccCCCeEEEEECCCCEEEEEe-CCCC-EEEEecccccccccCccccccCCCCc
Confidence                   000111222 34443       4566666666778899998 4553 3333321                   


Q ss_pred             -----CCCeeEeeecCC-c-eEEEeeCCCcEEEeecCCCCce
Q psy12697        522 -----SAPALDVDWQSN-T-SFASCSTDQHIHVCKLHSDKPV  556 (602)
Q Consensus       522 -----~~~v~~~~~s~~-~-~l~~~~~d~~i~iw~~~~~~~~  556 (602)
                           -.....+++.++ + .+++=.....|+.++++....+
T Consensus       438 ~~~a~f~~P~gIavd~~~g~lyVaD~~N~rIrki~~~~~~~~  479 (496)
T 3kya_A          438 REVARFRDVSGLVYDDVKEMFYVHDQVGHTIRTISMEQEENV  479 (496)
T ss_dssp             TTTCCCSSEEEEEEETTTTEEEEEETTTTEEEEEEECCCC--
T ss_pred             hhhhhcCCCcEEEEECCCCEEEEEeCCCCEEEEEECCCCccc
Confidence                 012567888886 6 4444455677888887665444

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=97.89  E-value=0.016  Score=53.85  Aligned_cols=249  Identities=14%  Similarity=0.143  Sum_probs=131.1

Q ss_pred             eeeeccCCceEEEEECCCCCeEEEeeCCceEEEEecCCceeEEEeeccCceEEEEeCCCCCCCCCCCCccccccccccCC
Q psy12697        134 NTLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKGTGGIFEVCWNSRGTPPNPPESMEVDASIEIPQS  213 (602)
Q Consensus       134 ~~l~~h~~~V~~~~~s~d~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  213 (602)
                      ..+...-...+.|+|.|||+++++--..|.|++++..+++... +...                             +  
T Consensus        25 ~~va~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~-v~~~-----------------------------~--   72 (347)
T 3das_A           25 RTVATGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTE-LGEV-----------------------------P--   72 (347)
T ss_dssp             EEEECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEE-EEEC-----------------------------T--
T ss_pred             EEeecCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEee-eccc-----------------------------C--
Confidence            3444445567899999999988777668999999876554321 1000                             0  


Q ss_pred             cceEeeCCCcceEEEEEcCC---CCEEEEe-e--CCCcEEEEeCCCCCCC--CCccceEEEEEEecCCCcccCCCCceeE
Q psy12697        214 KATKLIGHESEVFICAWNPV---KDFLASG-S--GDSTARIWDMTDSTKK--DPKELQIVLRHCISKGGTEVPSNKDVTS  285 (602)
Q Consensus       214 ~~~~l~~h~~~v~~~~~~~~---~~~l~s~-~--~dg~i~iw~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~~  285 (602)
                        ............++++|+   +..|... +  .++.|.-|.+......  .......+.... ..     .....-..
T Consensus        73 --~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~-p~-----~~~H~g~~  144 (347)
T 3das_A           73 --GVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRIVRMLYDEKKPSGEQLGAPDTVFRGI-PK-----GVIHNGGR  144 (347)
T ss_dssp             --TCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEEEEEEBCTTSCTTCCBCCCEEEEEEE-CC-----CSSCCCCC
T ss_pred             --ceeecCCCCceeeEeccccccCCEEEEEEecCCCCEEEEEEeCCCCcccccCCCcEEEEEcC-CC-----CCCccCcc
Confidence              001123456788999985   3444432 2  3445555665543210  111112222111 11     11123567


Q ss_pred             EeeCCCCCeEEEEeC-------------CCeEEEEcCCCcc--------eeec-ccccCCeEEEEEccCCCEEEEEe-cC
Q psy12697        286 LDWNNNGSFLATGSY-------------DGYARIWTSDGSL--------KSTL-GQHKGPIFALKWNKRGNYILSAG-VD  342 (602)
Q Consensus       286 ~~~~~~~~~l~~~~~-------------dg~i~i~~~~~~~--------~~~~-~~~~~~i~~~~~~~~~~~l~~~~-~d  342 (602)
                      |.|.|||.+.++.+.             .|.|.-.+.++..        ...+ .+|. ....++|+|+|...++-. .+
T Consensus       145 l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip~~nPf~~~~i~a~G~R-Np~Gla~dp~G~L~~~d~g~~  223 (347)
T 3das_A          145 IAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEPAPGNPFPGSPVYSYGHR-NVQGLAWDDKQRLFASEFGQD  223 (347)
T ss_dssp             EEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSBCTTCSSTTCCEEEBCCS-BCCEEEECTTCCEEEEECCSS
T ss_pred             ccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCccCCCCCCCCeEEeeCCC-CcceEEECCCCCEEEEecCCC
Confidence            999999987776542             3566666666541        1111 2333 356889999877554431 22


Q ss_pred             CcEEEEeCCCCce------------------eEEeeeccCCeeeeeccCCCeEEEeeCCCeEEEEEcCCCce----eeEe
Q psy12697        343 KTTIIWDAASGQC------------------EQQFSFHSAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKP----VKSF  400 (602)
Q Consensus       343 g~i~~wd~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~----~~~~  400 (602)
                      +.=.|--+..+..                  +..+..+......+.|..+..|+.....+.|....+.....    ...+
T Consensus       224 ~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~~~~~ap~G~~~~~g~~~~~~l~~~~l~~v~~~~~~~~~~~e~~l  303 (347)
T 3das_A          224 TWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWSTDEASPSGIAYAEGSVWMAGLRGERLWRIPLKGTAAAADPQAFL  303 (347)
T ss_dssp             SCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEECTTTCCEEEEEEETTEEEEEESTTCSEEEEEEETTEESSCCEEES
T ss_pred             CCceeeEEcCCCEecCCcccCCCCCccccCCcEecCCCCCCCcceEEEcCceeeccccCCEEEEEEecCCceecceEEee
Confidence            2122222222110                  11111111234455565555555555666777666655432    2334


Q ss_pred             ccCCCCeEEEEECCCCCEEEEEE
Q psy12697        401 EGHTNEVNAIKWDPQGLLLASCS  423 (602)
Q Consensus       401 ~~~~~~i~~~~~~~~~~~l~~~~  423 (602)
                      .+....+..++..|||.++++.+
T Consensus       304 ~~~~gR~~dv~~~pDG~lyv~td  326 (347)
T 3das_A          304 EGEYGRLRTVAPAGGDKLWLVTS  326 (347)
T ss_dssp             TTTSSCEEEEEEEETTEEEEEEC
T ss_pred             cCCCCCccEEEECCCCcEEEEEc
Confidence            44456799999999997766654

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=97.86  E-value=0.0098  Score=56.14  Aligned_cols=243  Identities=12%  Similarity=0.123  Sum_probs=118.2

Q ss_pred             CceeEEeeCCCCCeEEEEeCCCeEEEEcCCCccee--ec---ccccCCeEEEEEccC---CCEEEEEec-C-----CcEE
Q psy12697        281 KDVTSLDWNNNGSFLATGSYDGYARIWTSDGSLKS--TL---GQHKGPIFALKWNKR---GNYILSAGV-D-----KTTI  346 (602)
Q Consensus       281 ~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~--~~---~~~~~~i~~~~~~~~---~~~l~~~~~-d-----g~i~  346 (602)
                      .....++|.|+|+++ ++...|.|.+++ ++....  .+   .........++++|+   +..|+.+.. .     +.|.
T Consensus        31 ~~P~~ia~~pdG~l~-V~e~~g~I~~i~-~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~  108 (352)
T 2ism_A           31 EVPWALAFLPDGGML-IAERPGRIRLFR-EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVV  108 (352)
T ss_dssp             SCEEEEEECTTSCEE-EEETTTEEEEEE-TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEE
T ss_pred             CCceEEEEcCCCeEE-EEeCCCeEEEEE-CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEEE
Confidence            346799999999854 456679999998 543211  11   122456889999998   555555443 2     5677


Q ss_pred             EEeCCCCce-----e-EEeee---ccCCeeeeeccCCCeEEEeeCC--------------CeEEEEEcCCC---------
Q psy12697        347 IWDAASGQC-----E-QQFSF---HSAPALDVDWQSNTSFASCSTD--------------QHIHVCKLHSD---------  394 (602)
Q Consensus       347 ~wd~~~~~~-----~-~~~~~---~~~~~~~~~~~~~~~~~~~~~~--------------~~i~i~d~~~~---------  394 (602)
                      .++...+..     + ..+..   .......+.|.+++.+.++..+              |.|.-++....         
T Consensus       109 r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~npf~~  188 (352)
T 2ism_A          109 RLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGNPFLG  188 (352)
T ss_dssp             EEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTCTTTT
T ss_pred             EEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCCcccC
Confidence            887764421     1 11221   1123457888888876665422              45666655431         


Q ss_pred             ----ceeeEeccCCCCeEEEEECC-CCCEEEEEECCCeEEEEeCCCCeeeEeeccccccEEEEEECCCCCCCCCCCccee
Q psy12697        395 ----KPVKSFEGHTNEVNAIKWDP-QGLLLASCSDDMTLKIWSLDKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLI  469 (602)
Q Consensus       395 ----~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  469 (602)
                          .......++ .....++|+| ++.++++-...+.+.  + .....+..+......    -| |..... ...... 
T Consensus       189 ~~~~~~~i~a~G~-rnp~g~a~d~~~g~l~v~d~g~~~~~--~-~~~dei~~i~~G~ny----Gw-p~~~g~-~~~~~~-  257 (352)
T 2ism_A          189 RRGARPEVYSLGH-RNPQGLAWHPKTGELFSSEHGPSGEQ--G-YGHDEVNLIVPGGNY----GW-PRVVGR-GNDPRY-  257 (352)
T ss_dssp             CTTSCTTEEEECC-SEECCCEECTTTCCEEEEEECC---------CCCEEEEECTTCBC----CT-TTCCSC-CCCTTS-
T ss_pred             CCCCCccEEEEcC-CCcccEEEECCCCCEEEEEcCCCCCC--C-CCCeEEEEeccCCcC----CC-CcccCC-CCCCCC-
Confidence                100111122 2356788999 566555443333221  1 001111111100000    00 000000 000000 


Q ss_pred             eeeeeccCCccCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCce------eeeecccCCCeeEeeecCCc-eEEE
Q psy12697        470 FILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQC------EQQFSFHSAPALDVDWQSNT-SFAS  538 (602)
Q Consensus       470 ~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~~~~~~------~~~~~~~~~~v~~~~~s~~~-~l~~  538 (602)
                      ......+ .+......++| .+|+++++.-..+.|...+++....      ...+-.....+..+++.||| .+++
T Consensus       258 ~~p~~~~-~~~~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~  331 (352)
T 2ism_A          258 RDPLYFW-PQGFPPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALSGFGRLREVQVGPDGALYVT  331 (352)
T ss_dssp             CCCSEEC-TTCCCEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEESSCCEEEEEECTTSCEEEE
T ss_pred             cCCeEec-CCCCCCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchheecccCCCeeEEEECCCCcEEEE
Confidence            0000011 12234566777 4677776666677788877764431      12222223568899999999 4443

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=97.85  E-value=0.026  Score=55.19  Aligned_cols=247  Identities=12%  Similarity=0.081  Sum_probs=133.7

Q ss_pred             eEEEEECC-CCCeEEEe-eCCceEEEEecCCceeEEEeeccCceEEEEeCCCCCCCCCCCCccccccccccCCcceEeeC
Q psy12697        143 VYSVAFSP-DGKFLASG-SFDKCVHIWSARTGQLVHSYKGTGGIFEVCWNSRGTPPNPPESMEVDASIEIPQSKATKLIG  220 (602)
Q Consensus       143 V~~~~~s~-d~~~l~s~-~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  220 (602)
                      ...|+|+| +...|..+ ...+.|++.|+.++.........                                     ..
T Consensus       141 p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~-------------------------------------~~  183 (496)
T 3kya_A          141 NGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNIN-------------------------------------TI  183 (496)
T ss_dssp             EEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCT-------------------------------------TS
T ss_pred             CCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccC-------------------------------------cc
Confidence            56899998 34444444 44577888888877665322110                                     01


Q ss_pred             CCcceEEEEE-------cCCCCEEEEeeCCC-c------EEEEeCCC-CCCCCCccceEEEEEEecCCCcccCCCCceeE
Q psy12697        221 HESEVFICAW-------NPVKDFLASGSGDS-T------ARIWDMTD-STKKDPKELQIVLRHCISKGGTEVPSNKDVTS  285 (602)
Q Consensus       221 h~~~v~~~~~-------~~~~~~l~s~~~dg-~------i~iw~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  285 (602)
                      .......++|       +++++.|+++...+ .      |.+.+... +.............            ......
T Consensus       184 ~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~------------~~~p~g  251 (496)
T 3kya_A          184 PTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLIAA------------YKQCNG  251 (496)
T ss_dssp             SCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEEE------------ESCCCC
T ss_pred             ccCCCcEEEEeecccccCCCCCEEEEEeCCCCCcccCceEEEEecCCCCceeecccceeecc------------CCCceE
Confidence            2335788999       99998676665543 2      44554333 11110000011110            133567


Q ss_pred             EeeCCC-CCeEEEEeCCCeEEEEcCC-------Ccce------------ee-c-ccccCCeEEEEEccCCCEEEEE-ecC
Q psy12697        286 LDWNNN-GSFLATGSYDGYARIWTSD-------GSLK------------ST-L-GQHKGPIFALKWNKRGNYILSA-GVD  342 (602)
Q Consensus       286 ~~~~~~-~~~l~~~~~dg~i~i~~~~-------~~~~------------~~-~-~~~~~~i~~~~~~~~~~~l~~~-~~d  342 (602)
                      ++++|+ +.++++-..++.|..+|++       ....            .. + .........++|+|+|+.|+.+ +..
T Consensus       252 iavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~  331 (496)
T 3kya_A          252 ATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINN  331 (496)
T ss_dssp             EEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTT
T ss_pred             EEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCC
Confidence            888995 5555566677889999975       2221            11 1 1123446799999999965555 456


Q ss_pred             CcEEEEeC--CCCcee--EEeeec---c------------CCee-eeecc-------CCCeEE-EeeCCCeEEEEEcCCC
Q psy12697        343 KTTIIWDA--ASGQCE--QQFSFH---S------------APAL-DVDWQ-------SNTSFA-SCSTDQHIHVCKLHSD  394 (602)
Q Consensus       343 g~i~~wd~--~~~~~~--~~~~~~---~------------~~~~-~~~~~-------~~~~~~-~~~~~~~i~i~d~~~~  394 (602)
                      ..|+.++.  ..+...  ..+.+.   .            .... .+...       +++.++ +-..++.|+.++ .++
T Consensus       332 h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~-~~G  410 (496)
T 3kya_A          332 HYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVT-PEG  410 (496)
T ss_dssp             TEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEEC-TTC
T ss_pred             CEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCCeEEEEEccccccccCCCeEEEEECCCCEEEEEe-CCC
Confidence            77888554  333221  122111   0            0122 22222       233333 334567788877 344


Q ss_pred             ceeeEeccC------------------------CCCeEEEEECCC-CCEEEEEECCCeEEEEeCCCCeeeE
Q psy12697        395 KPVKSFEGH------------------------TNEVNAIKWDPQ-GLLLASCSDDMTLKIWSLDKDNCVH  440 (602)
Q Consensus       395 ~~~~~~~~~------------------------~~~i~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~  440 (602)
                      . +.++-+.                        -.....|+++++ +.++++=..+.+|+.+++....++.
T Consensus       411 ~-v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~~g~lyVaD~~N~rIrki~~~~~~~~~  480 (496)
T 3kya_A          411 I-VSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDDVKEMFYVHDQVGHTIRTISMEQEENVA  480 (496)
T ss_dssp             B-EEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEETTTTEEEEEETTTTEEEEEEECCCC---
T ss_pred             C-EEEEecccccccccCccccccCCCCchhhhhcCCCcEEEEECCCCEEEEEeCCCCEEEEEECCCCcccc
Confidence            3 3333221                        124678999986 6666665667889998887655443

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=97.85  E-value=0.002  Score=58.72  Aligned_cols=166  Identities=10%  Similarity=0.186  Sum_probs=104.6

Q ss_pred             cCCeeeeeccC-CCeEEEee-CCCeEEEEEcCCCceeeE-ecc----CC--CCeEEEEE---CCCCCEEEEEEC------
Q psy12697        363 SAPALDVDWQS-NTSFASCS-TDQHIHVCKLHSDKPVKS-FEG----HT--NEVNAIKW---DPQGLLLASCSD------  424 (602)
Q Consensus       363 ~~~~~~~~~~~-~~~~~~~~-~~~~i~i~d~~~~~~~~~-~~~----~~--~~i~~~~~---~~~~~~l~~~~~------  424 (602)
                      ..-..+..|.+ ++.|..++ ..+.|..|+...+..... +.+    ..  ..+..+.+   +|+++++++...      
T Consensus        12 ~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~   91 (334)
T 2p9w_A           12 NLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNF   91 (334)
T ss_dssp             TCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCT
T ss_pred             ccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccccc
Confidence            33455677865 56666666 689999999976543322 222    11  13679999   688888776441      


Q ss_pred             -------CCeEEEEeCC---CCeeeEeeccc--cccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCC
Q psy12697        425 -------DMTLKIWSLD---KDNCVHDLQAH--NKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRG  492 (602)
Q Consensus       425 -------dg~i~iwd~~---~~~~~~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~  492 (602)
                             +..|..||+.   +++.+......  ...                       +.............++..++|
T Consensus        92 ~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~-----------------------~~~~~g~~~~~~nDvavD~~G  148 (334)
T 2p9w_A           92 ADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDE-----------------------FEKKAGKRPFGVVQSAQDRDG  148 (334)
T ss_dssp             TSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHH-----------------------HHHHHSSCCEEEEEEEECTTS
T ss_pred             cccccCCCCEEEEEcCCcCCCCCEEEEecCcccccc-----------------------ccccccccccCCceeEECCCC
Confidence                   5778899988   66655443210  000                       000000011346788888899


Q ss_pred             CEEEEEeCC-CeEEEEeCCCCceeeeecc------cCCCeeEeeecCCc-eEEEeeCCCcEEEeecCC
Q psy12697        493 NYILSAGVD-KTTIIWDAASGQCEQQFSF------HSAPALDVDWQSNT-SFASCSTDQHIHVCKLHS  552 (602)
Q Consensus       493 ~~l~s~~~d-g~i~iwd~~~~~~~~~~~~------~~~~v~~~~~s~~~-~l~~~~~d~~i~iw~~~~  552 (602)
                      +..++++.. +.|...+... +.+..+..      .....+.++++|+| .|++....+.+..+|+..
T Consensus       149 naYVt~s~~~~~I~rV~pdG-~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~  215 (334)
T 2p9w_A          149 NSYVAFALGMPAIARVSADG-KTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSK  215 (334)
T ss_dssp             CEEEEEEESSCEEEEECTTS-CCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSS
T ss_pred             CEEEeCCCCCCeEEEEeCCC-CEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCC
Confidence            999988888 8888888663 33332221      11236799999999 676666699999999874

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=97.83  E-value=0.0097  Score=62.40  Aligned_cols=156  Identities=10%  Similarity=-0.039  Sum_probs=100.5

Q ss_pred             CceeEEeeCCCCCeEE-EEeCCCeEEEEcCCCc-----ceeecccccCCeEEEEEccCCCEEEEE-ecCCcEEEEeCCCC
Q psy12697        281 KDVTSLDWNNNGSFLA-TGSYDGYARIWTSDGS-----LKSTLGQHKGPIFALKWNKRGNYILSA-GVDKTTIIWDAASG  353 (602)
Q Consensus       281 ~~i~~~~~~~~~~~l~-~~~~dg~i~i~~~~~~-----~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~~wd~~~~  353 (602)
                      ..+..++|.+.+..|+ +-...+.|+.+++++.     ....+.........|++.+.++.|+.+ ...+.|.+.++...
T Consensus       424 ~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~  503 (791)
T 3m0c_C          424 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV  503 (791)
T ss_dssp             SSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSS
T ss_pred             CceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCCCC
Confidence            5678899998555544 4455678888888753     223333344556789998877655544 45688999998755


Q ss_pred             ceeEEeeeccCCeeeeeccCC-CeEEEee-C-CCeEEEEEcCCCceeeEeccCCCCeEEEEECCCCCEEEEEE-CCCeEE
Q psy12697        354 QCEQQFSFHSAPALDVDWQSN-TSFASCS-T-DQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCS-DDMTLK  429 (602)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~-~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~  429 (602)
                      .....+.........+++.+. +.++... . .+.|...++........+...-.....|++++.+..|+.+. ..+.|.
T Consensus       504 ~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~  583 (791)
T 3m0c_C          504 KRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSIS  583 (791)
T ss_dssp             SEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEE
T ss_pred             eEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEeCCCCCceEEEEecCCCeEEEEeCCCCcEE
Confidence            443333334445777888765 5555444 2 36788888876554444444446789999998777776664 456788


Q ss_pred             EEeCCCC
Q psy12697        430 IWSLDKD  436 (602)
Q Consensus       430 iwd~~~~  436 (602)
                      ..++...
T Consensus       584 ~~d~dG~  590 (791)
T 3m0c_C          584 SIDVNGG  590 (791)
T ss_dssp             EEETTSC
T ss_pred             EEecCCC
Confidence            8887643

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=97.81  E-value=0.053  Score=57.44  Aligned_cols=389  Identities=10%  Similarity=0.030  Sum_probs=211.9

Q ss_pred             CCceEEEEECCCCCeEEEeeCCceEEEEecCCceeEEEeeccCceEEEEeCCCCCCCCCCCCccccccccccCCcceEee
Q psy12697        140 TEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKGTGGIFEVCWNSRGTPPNPPESMEVDASIEIPQSKATKLI  219 (602)
Q Consensus       140 ~~~V~~~~~s~d~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  219 (602)
                      ...|.++....+|. |..|+.+| +..||..+.+...  .                                    .  .
T Consensus        62 ~~~i~~i~~d~~g~-lWigT~~G-l~~yd~~~~~f~~--~------------------------------------~--~   99 (758)
T 3ott_A           62 NTRIYCGVIIDNTY-LYMGTDNG-ILVYNYRADRYEQ--P------------------------------------E--T   99 (758)
T ss_dssp             SSCEEEEEEETTTE-EEEEETTE-EEEEETTTTEECC--C------------------------------------S--C
T ss_pred             CceEEEEEEcCCCc-EEEEeCCC-eEEEeCCCCEEEC--c------------------------------------c--c
Confidence            34688887777765 44445555 7788887654210  0                                    0  0


Q ss_pred             CCCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEeeCCCCCeEEEEe
Q psy12697        220 GHESEVFICAWNPVKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFLATGS  299 (602)
Q Consensus       220 ~h~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  299 (602)
                      .....|.++.. .++ .|..++.+ -+..++..+....      .    ....  ........|.++....+|.+.+ |+
T Consensus       100 ~~~~~i~~i~~-~~g-~lWigt~~-Gl~~~~~~~~~~~------~----~~~~--~~~l~~~~i~~i~~d~~g~lWi-gt  163 (758)
T 3ott_A          100 DFPTDVRTMAL-QGD-TLWLGALN-GLYTYQLQSRKLT------S----FDTR--RNGLPNNTIYSIIRTKDNQIYV-GT  163 (758)
T ss_dssp             CCCSCEEEEEE-ETT-EEEEEETT-EEEEEETTTCCEE------E----ECHH--HHCCSCSCEEEEEECTTCCEEE-EE
T ss_pred             CCCceEEEEEe-cCC-cEEEEcCC-cceeEeCCCCeEE------E----eccC--CCCcCCCeEEEEEEcCCCCEEE-Ee
Confidence            01123555543 234 56666665 5777887554311      0    0000  0001135688888888877555 55


Q ss_pred             CCCeEEEEcCCCcceeeccc------ccCCeEEEEEccCCCEEEEEecCCcEEEEeCCCCceeEEeeeccCCeeeeeccC
Q psy12697        300 YDGYARIWTSDGSLKSTLGQ------HKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQS  373 (602)
Q Consensus       300 ~dg~i~i~~~~~~~~~~~~~------~~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~  373 (602)
                      .+| +..++........+..      ....|.++...+++..|..++. +-+..+|..+++...........+.++....
T Consensus       164 ~~G-l~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~~~~~~~~l~~~~i~~i~~d~  241 (758)
T 3ott_A          164 YNG-LCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-GYLFQYFPSTGQIKQTEAFHNNSIKSLALDG  241 (758)
T ss_dssp             TTE-EEEEETTTTEEEEECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-EEEEEEETTTTEEEEEEEEEEEEEEEEEECT
T ss_pred             CCC-HhhCccCCCceEEecCCCccccccceeEEEEEECCCCEEEEEEC-CCCeEEcCCCCeEEeccCCCCCeEEEEEEcC
Confidence            555 6677765443322211      1234888888877776666664 4588889877654332223344577777777


Q ss_pred             CCeEEEeeCCCeEEEEEcCCCceeeEec-------cCCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeeeEeec---
Q psy12697        374 NTSFASCSTDQHIHVCKLHSDKPVKSFE-------GHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHDLQ---  443 (602)
Q Consensus       374 ~~~~~~~~~~~~i~i~d~~~~~~~~~~~-------~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~---  443 (602)
                      ++.+.+|+. +-+.+++..+.+......       -....|.++..+.+|.+ -.|+..| +.++.....-......   
T Consensus       242 ~g~lWigT~-~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~l-WiGT~~G-l~~~~~~~~~~~~~~~~~~  318 (758)
T 3ott_A          242 NGDLLAGTD-NGLYVYHNDTTPLQHIIHDSRNIQSLTNNIIWNIFADQEHNI-WLGTDYG-ISLSRYNSALQFIPISQIT  318 (758)
T ss_dssp             TCCEEEEET-TEEEEECCTTSCCEEECCCTTCTTSCSCSCEEEEEECTTCCE-EEEESSS-EEEECCCC-CEEEEHHHHS
T ss_pred             CCCEEEEeC-CceeEEecCCCcEEEEEcCCCCcCcCCcCeEEEEEEcCCCCE-EEEeCCc-ccccccCCceeEEecccCC
Confidence            888888885 467888876654322111       12345899998888864 4455667 5444332211111110   


Q ss_pred             --cccccEEEEEECCCCCCCCCCCcceeeeeeec---------c-------CCccCCeEEEEEccCCCEEEEEeCCCeEE
Q psy12697        444 --AHNKEIYTIKWSPTGPETSNPNMSLIFILKST---------L-------GQHKGPIFALKWNKRGNYILSAGVDKTTI  505 (602)
Q Consensus       444 --~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~---------~-------~~~~~~v~~i~~s~~~~~l~s~~~dg~i~  505 (602)
                        .....|.++....++........ ....+...         +       .-....|.++.-.++|++-+. .. +-|.
T Consensus       319 ~~~~~~~v~~i~~D~~g~lWiGt~~-Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lWig-t~-~GL~  395 (758)
T 3ott_A          319 GTGDGNQFYSLFRDSKGFYWFGGAN-GLIRFTDPAGERHDAIWYRMGDKTYPLSHNRIRHIYEDKEQQLWIA-TD-GSIN  395 (758)
T ss_dssp             CSCCCCBEEEEEECTTCCEEEEETT-EEEEESCTTSSCCCCEEECTTCSSSCCSCSCEEEEEECTTSCEEEE-ET-TEEE
T ss_pred             CCCCCceEEEEEEcCCCCEEEeeCC-cceeecccccccceeEEeccCCcCCCCCCCceEEEEECCCCCEEEE-eC-CcHh
Confidence              11235677766655543221111 11111100         0       012245888888888876553 33 4699


Q ss_pred             EEeCCCCceeeeec-c-----cCCCeeEeeecCCceEEEeeCCCcEEEeecCCC-----Ccee---eeecccccceEEEE
Q psy12697        506 IWDAASGQCEQQFS-F-----HSAPALDVDWQSNTSFASCSTDQHIHVCKLHSD-----KPVK---SFEGHTTGQLVHSY  571 (602)
Q Consensus       506 iwd~~~~~~~~~~~-~-----~~~~v~~~~~s~~~~l~~~~~d~~i~iw~~~~~-----~~~~---~~~~~~~~~~~~~~  571 (602)
                      .||..+++...... .     ....|.++...+++.|-.|+..+.+.+++..+.     ....   .+. ...+     +
T Consensus       396 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWigT~~~Gl~~~~~~~~~~~~~~~~~~~~~~~-~~~~-----l  469 (758)
T 3ott_A          396 RYDYATRQFIHYNIVDNTGTYNTNWTYYIFEDTAGQLWISTCLGGIFVVDKHKLMQSTSGQYIAEQNYS-VHNG-----L  469 (758)
T ss_dssp             EEETTTTEEEEEEEECCC--CBSSSEEEEEECTTSEEEEEESSSCEEEEEHHHHHHCCSSEEECSEEEC-GGGT-----C
T ss_pred             hcCcCCCcEEEeecCCCcCCCCCceEEEEEEcCCCCEEEEECCCceEEEccccccccCCcceecccccc-cccc-----c
Confidence            99988775432211 1     234578888888886666777777888885421     1110   000 0000     0


Q ss_pred             ecCCcEEEEEECCCCCeEE-EeccCCeEEee
Q psy12697        572 KGTGGIFEVCWNSRGDKVG-ASASDGSVFKN  601 (602)
Q Consensus       572 ~~~~~i~~l~~spdg~~l~-~~~~dg~v~i~  601 (602)
                       ....|.++..+++|.+.+ .++.+|..+++
T Consensus       470 -~~~~i~~i~~d~~g~lWi~~~t~~Gl~~~d  499 (758)
T 3ott_A          470 -SGMFINQIIPDNEGNVWVLLYNNKGIDKIN  499 (758)
T ss_dssp             -SCSCEEEEEECTTSCEEEEETTCSSEEEEE
T ss_pred             -ccceeeeEEEcCCCCEEEEccCCCCcEEEe
Confidence             123588999999998765 36667766654

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=97.78  E-value=0.06  Score=57.01  Aligned_cols=401  Identities=10%  Similarity=0.025  Sum_probs=209.3

Q ss_pred             eeeeecccceeeeeeeccCCceEEEEECCCCCeEEEeeCCceEEEEecCCceeEEEee-----ccCceEEEEeCCCCCCC
Q psy12697        122 LPLWDVERGECLNTLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYK-----GTGGIFEVCWNSRGTPP  196 (602)
Q Consensus       122 i~vwd~~~~~~~~~l~~h~~~V~~~~~s~d~~~l~s~~~d~~v~iwd~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~  196 (602)
                      +..+|..+.+...........|.++.. .+|. |..++.+ -+..+|..+++......     ....+..+....+|...
T Consensus        84 l~~yd~~~~~f~~~~~~~~~~i~~i~~-~~g~-lWigt~~-Gl~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lW  160 (758)
T 3ott_A           84 ILVYNYRADRYEQPETDFPTDVRTMAL-QGDT-LWLGALN-GLYTYQLQSRKLTSFDTRRNGLPNNTIYSIIRTKDNQIY  160 (758)
T ss_dssp             EEEEETTTTEECCCSCCCCSCEEEEEE-ETTE-EEEEETT-EEEEEETTTCCEEEECHHHHCCSCSCEEEEEECTTCCEE
T ss_pred             eEEEeCCCCEEECcccCCCceEEEEEe-cCCc-EEEEcCC-cceeEeCCCCeEEEeccCCCCcCCCeEEEEEEcCCCCEE
Confidence            566777665433211112345777754 3554 4445555 57888887765432201     12335566655555443


Q ss_pred             CCCCCccccccccccCCcceEeeC------CCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCccceEEEEEEe
Q psy12697        197 NPPESMEVDASIEIPQSKATKLIG------HESEVFICAWNPVKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCI  270 (602)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~l~~------h~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~  270 (602)
                      ..... .. ..+.........+..      ....|.++...+++..|..|+. +-+..++..++...      ....  .
T Consensus       161 igt~~-Gl-~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~~~~------~~~~--l  229 (758)
T 3ott_A          161 VGTYN-GL-CRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-GYLFQYFPSTGQIK------QTEA--F  229 (758)
T ss_dssp             EEETT-EE-EEEETTTTEEEEECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-EEEEEEETTTTEEE------EEEE--E
T ss_pred             EEeCC-CH-hhCccCCCceEEecCCCccccccceeEEEEEECCCCEEEEEEC-CCCeEEcCCCCeEE------eccC--C
Confidence            32211 10 001111111111110      1234788888777776666664 45777776554211      0000  0


Q ss_pred             cCCCcccCCCCceeEEeeCCCCCeEEEEeCCCeEEEEcCCCcceeeccc--------ccCCeEEEEEccCCCEEEEEecC
Q psy12697        271 SKGGTEVPSNKDVTSLDWNNNGSFLATGSYDGYARIWTSDGSLKSTLGQ--------HKGPIFALKWNKRGNYILSAGVD  342 (602)
Q Consensus       271 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~--------~~~~i~~~~~~~~~~~l~~~~~d  342 (602)
                              ....|.++...++|.+.+ |+.+ -+.+++........+..        ....|.++....+|.. -.|+..
T Consensus       230 --------~~~~i~~i~~d~~g~lWi-gT~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~l-WiGT~~  298 (758)
T 3ott_A          230 --------HNNSIKSLALDGNGDLLA-GTDN-GLYVYHNDTTPLQHIIHDSRNIQSLTNNIIWNIFADQEHNI-WLGTDY  298 (758)
T ss_dssp             --------EEEEEEEEEECTTCCEEE-EETT-EEEEECCTTSCCEEECCCTTCTTSCSCSCEEEEEECTTCCE-EEEESS
T ss_pred             --------CCCeEEEEEEcCCCCEEE-EeCC-ceeEEecCCCcEEEEEcCCCCcCcCCcCeEEEEEEcCCCCE-EEEeCC
Confidence                    024588888888876554 5554 47778866443332211        2345889988887764 445555


Q ss_pred             CcEEEEeCCCCceeEEee-------eccCCeeeeeccCCCeEEEeeCCCeEEEEEcCCCc--eeeEec-------cCCCC
Q psy12697        343 KTTIIWDAASGQCEQQFS-------FHSAPALDVDWQSNTSFASCSTDQHIHVCKLHSDK--PVKSFE-------GHTNE  406 (602)
Q Consensus       343 g~i~~wd~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~--~~~~~~-------~~~~~  406 (602)
                      | +.++... .. ...+.       .....+.++....++.+.+|+.+ -+..++..+++  ....+.       .....
T Consensus       299 G-l~~~~~~-~~-~~~~~~~~~~~~~~~~~v~~i~~D~~g~lWiGt~~-Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  374 (758)
T 3ott_A          299 G-ISLSRYN-SA-LQFIPISQITGTGDGNQFYSLFRDSKGFYWFGGAN-GLIRFTDPAGERHDAIWYRMGDKTYPLSHNR  374 (758)
T ss_dssp             S-EEEECCC-C--CEEEEHHHHSCSCCCCBEEEEEECTTCCEEEEETT-EEEEESCTTSSCCCCEEECTTCSSSCCSCSC
T ss_pred             c-ccccccC-Cc-eeEEecccCCCCCCCceEEEEEEcCCCCEEEeeCC-cceeecccccccceeEEeccCCcCCCCCCCc
Confidence            6 5544322 11 11111       11235677777777888888865 46666655432  111221       11245


Q ss_pred             eEEEEECCCCCEEEEEECCCeEEEEeCCCCeeeEee--cc----ccccEEEEEECCCCCCCCCCCcceeeeeee------
Q psy12697        407 VNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHDL--QA----HNKEIYTIKWSPTGPETSNPNMSLIFILKS------  474 (602)
Q Consensus       407 i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~--~~----~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~------  474 (602)
                      |.++.-+++|++.+ |+. +-+..||..+++.....  ..    ....|.++...+++..........+..+..      
T Consensus       375 v~~i~~d~~g~lWi-gt~-~GL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWigT~~~Gl~~~~~~~~~~~  452 (758)
T 3ott_A          375 IRHIYEDKEQQLWI-ATD-GSINRYDYATRQFIHYNIVDNTGTYNTNWTYYIFEDTAGQLWISTCLGGIFVVDKHKLMQS  452 (758)
T ss_dssp             EEEEEECTTSCEEE-EET-TEEEEEETTTTEEEEEEEECCC--CBSSSEEEEEECTTSEEEEEESSSCEEEEEHHHHHHC
T ss_pred             eEEEEECCCCCEEE-EeC-CcHhhcCcCCCcEEEeecCCCcCCCCCceEEEEEEcCCCCEEEEECCCceEEEcccccccc
Confidence            89999888887544 454 46889998876543221  11    234577777666554322211111211110      


Q ss_pred             ---------c---c-CCccCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeeecc---cCCCeeEeeecCCceEEE
Q psy12697        475 ---------T---L-GQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSF---HSAPALDVDWQSNTSFAS  538 (602)
Q Consensus       475 ---------~---~-~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~---~~~~v~~~~~s~~~~l~~  538 (602)
                               .   . .-....|.++...++|++.+.++..+-|..+|..+++.......   ....+.++....+|.|-.
T Consensus       453 ~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~~~t~~Gl~~~d~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~lWi  532 (758)
T 3ott_A          453 TSGQYIAEQNYSVHNGLSGMFINQIIPDNEGNVWVLLYNNKGIDKINPRTREVTKLFADELTGEKSPNYLLCDEDGLLWV  532 (758)
T ss_dssp             CSSEEECSEEECGGGTCSCSCEEEEEECTTSCEEEEETTCSSEEEEETTTTEEEEECTTTSCGGGCEEEEEECTTSCEEE
T ss_pred             CCcceecccccccccccccceeeeEEEcCCCCEEEEccCCCCcEEEeCCCCceEEecCCCcCCCcccceEEECCCCCEEE
Confidence                     0   0 01223588999999998776333344588899887654432211   123577888888885555


Q ss_pred             eeCCCcEEEeecCCCC
Q psy12697        539 CSTDQHIHVCKLHSDK  554 (602)
Q Consensus       539 ~~~d~~i~iw~~~~~~  554 (602)
                      |+.. .+..++..+++
T Consensus       533 gt~~-Gl~~~~~~~~~  547 (758)
T 3ott_A          533 GFHG-GVMRINPKDES  547 (758)
T ss_dssp             EETT-EEEEECC--CC
T ss_pred             EecC-ceEEEecCCCc
Confidence            5554 58888866543

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=97.74  E-value=0.02  Score=52.16  Aligned_cols=162  Identities=10%  Similarity=0.079  Sum_probs=107.0

Q ss_pred             CCeEEEEEccCCCEEEEEe-cCCcEEEEeCCCCceeEE-eee----c--cCCeeeeec---cCCCeEEEeeC--------
Q psy12697        322 GPIFALKWNKRGNYILSAG-VDKTTIIWDAASGQCEQQ-FSF----H--SAPALDVDW---QSNTSFASCST--------  382 (602)
Q Consensus       322 ~~i~~~~~~~~~~~l~~~~-~dg~i~~wd~~~~~~~~~-~~~----~--~~~~~~~~~---~~~~~~~~~~~--------  382 (602)
                      ....++.|.+....|..++ ..++|..||...+..... +..    .  ...+..+.|   .+++.++++..        
T Consensus        13 ~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~   92 (334)
T 2p9w_A           13 LTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFA   92 (334)
T ss_dssp             CCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTT
T ss_pred             cCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEccccccccc
Confidence            3445789988666666666 689999999876644333 211    0  113567888   46677665433        


Q ss_pred             ------CCeEEEEEcC---CCceeeEec--c-----------CCCCeEEEEECCCCCEEEEEECC-CeEEEEeCCCCeee
Q psy12697        383 ------DQHIHVCKLH---SDKPVKSFE--G-----------HTNEVNAIKWDPQGLLLASCSDD-MTLKIWSLDKDNCV  439 (602)
Q Consensus       383 ------~~~i~i~d~~---~~~~~~~~~--~-----------~~~~i~~~~~~~~~~~l~~~~~d-g~i~iwd~~~~~~~  439 (602)
                            +..+..+|+.   +++.+....  .           .......++.+++|+..++++.. +.|...+.+.. .+
T Consensus        93 g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~-~~  171 (334)
T 2p9w_A           93 DQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGK-TV  171 (334)
T ss_dssp             SCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSC-CE
T ss_pred             ccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCC-EE
Confidence                  5789999999   777665443  1           11248899999999999999887 87776665432 22


Q ss_pred             EeeccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCC
Q psy12697        440 HDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASG  512 (602)
Q Consensus       440 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~~~~  512 (602)
                      ..+..          .+                  .........+.|+++|+|+.|++....|.|..+|+.+.
T Consensus       172 ~~~~~----------~~------------------~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~p  216 (334)
T 2p9w_A          172 STFAW----------ES------------------GNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKP  216 (334)
T ss_dssp             EEEEE----------CC------------------CCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSS
T ss_pred             eeeee----------cC------------------CCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCC
Confidence            11100          00                  00112345678999999999988877999999998854

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=97.71  E-value=0.001  Score=69.22  Aligned_cols=211  Identities=7%  Similarity=-0.111  Sum_probs=121.2

Q ss_pred             CcceEEEEEcCCCCEEEEee-CCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEeeCCCC-CeEEEEe
Q psy12697        222 ESEVFICAWNPVKDFLASGS-GDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNG-SFLATGS  299 (602)
Q Consensus       222 ~~~v~~~~~~~~~~~l~s~~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~  299 (602)
                      ...+..++|.+.+..|+.+. ..+.|..+++............            ..........+++.+.+ +++++-.
T Consensus       405 ~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~------------i~~~~~~P~glavD~~~g~LY~tD~  472 (699)
T 1n7d_A          405 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTV------------ISRDIQAPDGLAVDWIHSNIYWTDS  472 (699)
T ss_dssp             CTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCB------------CCSCC--CCCEECCCSSSBCEECCT
T ss_pred             CcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEE------------EeCCCCCcceEEEEeeCCcEEEEec
Confidence            34566889998776666554 4678888888752100000000            00001234567887644 4444445


Q ss_pred             CCCeEEEEcCCCcceeeccc-ccCCeEEEEEccCCCEEEEEec--CCcEEEEeCCCCceeEEeeeccCCeeeeeccCC-C
Q psy12697        300 YDGYARIWTSDGSLKSTLGQ-HKGPIFALKWNKRGNYILSAGV--DKTTIIWDAASGQCEQQFSFHSAPALDVDWQSN-T  375 (602)
Q Consensus       300 ~dg~i~i~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~--dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~-~  375 (602)
                      ..+.|.++++++.....+.. .......+++.|.+.+|+.+..  .+.|..+++............-.....+++.++ +
T Consensus       473 ~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~l~~PnGlavd~~~~  552 (699)
T 1n7d_A          473 VLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSG  552 (699)
T ss_dssp             TTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESCSSCSSCCCEEECTTTC
T ss_pred             cCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEeCCCCCccEEEEeccCC
Confidence            66889999998776555432 2345678899987666655543  267777776533222222222234567788764 3


Q ss_pred             e-EEEeeCCCeEEEEEcCCCceeeEec--cCCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeeeEeeccc
Q psy12697        376 S-FASCSTDQHIHVCKLHSDKPVKSFE--GHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHDLQAH  445 (602)
Q Consensus       376 ~-~~~~~~~~~i~i~d~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~  445 (602)
                      . +++-...+.|..+++........+.  ........|++..+ .++++....+.|..++..+++.+..+...
T Consensus       553 ~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~G~~~~~i~~~  624 (699)
T 1n7d_A          553 RLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTGSDVNLLAEN  624 (699)
T ss_dssp             CEEEEETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETTTEEEEECCCTT
T ss_pred             EEEEEecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEccCCCceEEeecC
Confidence            3 4455566789999986543322222  11233445666554 45555556788999998888877776543

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=97.71  E-value=0.035  Score=52.30  Aligned_cols=248  Identities=11%  Similarity=0.109  Sum_probs=154.6

Q ss_pred             CeEEEEcCCCcceeecccccCCeEEEEEccCCCEEEEEecCCcEEEEeCCCCceeEEeeeccCCeeeeeccCCCeEEEee
Q psy12697        302 GYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTSFASCS  381 (602)
Q Consensus       302 g~i~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  381 (602)
                      ..|.+.|+.........  .-.-.+.-.+|..+.++.-. ..++.++|+++...++.+.... ++.-=.|..+..++..+
T Consensus        48 ~~vvIiDl~~~~~~~rr--pi~AdsAIMnP~~~iiALra-g~~lQiFnle~K~klks~~~~e-~VvfWkWis~~~l~lVT  123 (494)
T 1bpo_A           48 AQVVIIDMNDPSNPIRR--PISADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD-DVTFWKWISLNTVALVT  123 (494)
T ss_dssp             CEEEEEETTSTTSCEEE--ECCCSEEEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEECSS-CCCEEEEEETTEEEEEC
T ss_pred             CeEEEEECCCCCcceec--ccccceeeeCCCCcEEEEec-CCeEEEEchHHhhhhcceecCC-CceEEEecCCCeEEEEc
Confidence            36778887642211111  11122445678777666544 7799999999999988887654 56666777777766654


Q ss_pred             CCCeEEEEEcCC-CceeeEeccCC----CCeEEEEECCCCCEEEEEEC-------CCeEEEEeCCCCeeeEeeccccccE
Q psy12697        382 TDQHIHVCKLHS-DKPVKSFEGHT----NEVNAIKWDPQGLLLASCSD-------DMTLKIWSLDKDNCVHDLQAHNKEI  449 (602)
Q Consensus       382 ~~~~i~i~d~~~-~~~~~~~~~~~----~~i~~~~~~~~~~~l~~~~~-------dg~i~iwd~~~~~~~~~~~~~~~~i  449 (602)
                       +..|+-|++.. ..|++.+..|.    ..|..-..+++.++++..+-       .|.+.+|..+.+ ..+.+.+|...-
T Consensus       124 -~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~-~sQ~ieGhaa~F  201 (494)
T 1bpo_A          124 -DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAASF  201 (494)
T ss_dssp             -SSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTC-CEEEECCSEEEE
T ss_pred             -CCeeEEecccCCCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeecccc-ccchheeeeeee
Confidence             56899999974 45767666553    46888889999999886542       477899998753 333344443322


Q ss_pred             --------------EEEEECCC-CCC-----CCCC------CcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCCCe
Q psy12697        450 --------------YTIKWSPT-GPE-----TSNP------NMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKT  503 (602)
Q Consensus       450 --------------~~~~~~~~-~~~-----~~~~------~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~  503 (602)
                                    .+.+.... +..     +..+      .......+.........--.++..|+.-..+.....-|.
T Consensus       202 ~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~  281 (494)
T 1bpo_A          202 AQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGY  281 (494)
T ss_dssp             EEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSE
T ss_pred             EEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEecCce
Confidence                          22222211 000     0000      000000011111122344557778888788888889999


Q ss_pred             EEEEeCCCCceeeeecccCCCeeEeeecCCc-eEEEeeCCCcEEEeecCCCCc
Q psy12697        504 TIIWDAASGQCEQQFSFHSAPALDVDWQSNT-SFASCSTDQHIHVCKLHSDKP  555 (602)
Q Consensus       504 i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~-~l~~~~~d~~i~iw~~~~~~~  555 (602)
                      |.+||++++.++..-+-...+|...+-.... -++.....|.|.--.++....
T Consensus       282 i~lyDleTgt~i~~nrIs~~~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~e~~i  334 (494)
T 1bpo_A          282 IHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEENI  334 (494)
T ss_dssp             EEEEETTTCCEEEEEECCSSCEEEEEEETTTTEEEEEETTCEEEEEEECTTTH
T ss_pred             EEEEecccceeeeeecccCCceEEecccCCCCcEEEEccCceEEEEEEccccc
Confidence            9999999999998777777777766665544 666666888877777665543

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=97.67  E-value=0.04  Score=51.90  Aligned_cols=260  Identities=11%  Similarity=0.115  Sum_probs=162.4

Q ss_pred             cceeeeecccceeeeeeeccCCceEEEEECCCCCeEEEeeCCceEEEEecCCceeEEEeeccCceEEEEeCCCCCCCCCC
Q psy12697        120 LTLPLWDVERGECLNTLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKGTGGIFEVCWNSRGTPPNPP  199 (602)
Q Consensus       120 ~~i~vwd~~~~~~~~~l~~h~~~V~~~~~s~d~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (602)
                      .+|.|.|+.++..+.+-.-.   -.+.-.+|..+.||--. ..++.|+|+++...+..+....+                
T Consensus        48 ~~vvIiDl~~~~~~~rrpi~---AdsAIMnP~~~iiALra-g~~lQiFnle~K~klks~~~~e~----------------  107 (494)
T 1bpo_A           48 AQVVIIDMNDPSNPIRRPIS---ADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDD----------------  107 (494)
T ss_dssp             CEEEEEETTSTTSCEEEECC---CSEEEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEECSSC----------------
T ss_pred             CeEEEEECCCCCcceecccc---cceeeeCCCCcEEEEec-CCeEEEEchHHhhhhcceecCCC----------------
Confidence            47889999876554222111   12345678788777664 78999999999999887764433                


Q ss_pred             CCccccccccccCCcceEeeCCCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCC
Q psy12697        200 ESMEVDASIEIPQSKATKLIGHESEVFICAWNPVKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPS  279 (602)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (602)
                                               |.--.|-.+ +.|+..+ +..|.-|++.....    +...+.++.     ..  .
T Consensus       108 -------------------------VvfWkWis~-~~l~lVT-~taVyHWsi~~~s~----P~kvFdR~~-----~L--~  149 (494)
T 1bpo_A          108 -------------------------VTFWKWISL-NTVALVT-DNAVYHWSMEGESQ----PVKMFDRHS-----SL--A  149 (494)
T ss_dssp             -------------------------CCEEEEEET-TEEEEEC-SSEEEEEESSSSCC----CEEEEECCG-----GG--T
T ss_pred             -------------------------ceEEEecCC-CeEEEEc-CCeeEEecccCCCC----chhheecch-----hc--c
Confidence                                     333444432 2344333 35799999875321    111121211     11  1


Q ss_pred             CCceeEEeeCCCCCeEEEEeC-------CCeEEEEcCCCcceeecccccCCeEEEEEccCC---CEEEEEec---CCcEE
Q psy12697        280 NKDVTSLDWNNNGSFLATGSY-------DGYARIWTSDGSLKSTLGQHKGPIFALKWNKRG---NYILSAGV---DKTTI  346 (602)
Q Consensus       280 ~~~i~~~~~~~~~~~l~~~~~-------dg~i~i~~~~~~~~~~~~~~~~~i~~~~~~~~~---~~l~~~~~---dg~i~  346 (602)
                      ...|..-..+++.++++..+-       .|.+.+|..+.+..+.+.+|......+....+.   +.+..+..   .+.+.
T Consensus       150 ~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLh  229 (494)
T 1bpo_A          150 GCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLH  229 (494)
T ss_dssp             TCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCCEEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEE
T ss_pred             cceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccccccchheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEE
Confidence            467888888999998875442       478999999999999999998777666554222   23333433   27888


Q ss_pred             EEeCCCC---c-----eeEEeeec----cCCeeeeeccC-CCeEEEeeCCCeEEEEEcCCCceeeEeccCCCCeEEEEEC
Q psy12697        347 IWDAASG---Q-----CEQQFSFH----SAPALDVDWQS-NTSFASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWD  413 (602)
Q Consensus       347 ~wd~~~~---~-----~~~~~~~~----~~~~~~~~~~~-~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~  413 (602)
                      +.++...   .     ....+...    .+-..++..++ .+.+...+.-|.+++||+.++..+..-+-..+.|...+.+
T Consensus       230 i~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDleTgt~i~~nrIs~~~iF~t~~~  309 (494)
T 1bpo_A          230 IIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPH  309 (494)
T ss_dssp             EEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEE
T ss_pred             EEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEecCceEEEEecccceeeeeecccCCceEEeccc
Confidence            8888543   1     11111111    11223333333 3678888999999999999999988777666667666666


Q ss_pred             CCCCEEEEEECCCeEEEEeCCCCe
Q psy12697        414 PQGLLLASCSDDMTLKIWSLDKDN  437 (602)
Q Consensus       414 ~~~~~l~~~~~dg~i~iwd~~~~~  437 (602)
                      ....-++.....|.|.--.++...
T Consensus       310 ~~~~Gi~~Vnr~GqVl~v~v~e~~  333 (494)
T 1bpo_A          310 EATAGIIGVNRKGQVLSVCVEEEN  333 (494)
T ss_dssp             TTTTEEEEEETTCEEEEEEECTTT
T ss_pred             CCCCcEEEEccCceEEEEEEcccc
Confidence            555556666677777666665543

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=97.64  E-value=0.041  Score=51.82  Aligned_cols=51  Identities=16%  Similarity=0.322  Sum_probs=30.9

Q ss_pred             EEEeeCCCeEEEEEcCCCceeeE---eccCCCCeEEEEECCCCCEEEEEE-CCCe
Q psy12697        377 FASCSTDQHIHVCKLHSDKPVKS---FEGHTNEVNAIKWDPQGLLLASCS-DDMT  427 (602)
Q Consensus       377 ~~~~~~~~~i~i~d~~~~~~~~~---~~~~~~~i~~~~~~~~~~~l~~~~-~dg~  427 (602)
                      +++....+.|...++..++.+..   +......+..+++.|||.+.++.. .+|.
T Consensus       292 ~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~td~~~g~  346 (353)
T 2g8s_A          292 FIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTGPDGYLYVLTDESSGE  346 (353)
T ss_dssp             EEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEECTTSCEEEEECSTTEE
T ss_pred             EEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEECCCCcEEEEEeCCCCE
Confidence            34444567777777765543322   222345789999999998666543 3443

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=97.61  E-value=0.048  Score=51.34  Aligned_cols=238  Identities=13%  Similarity=0.111  Sum_probs=120.7

Q ss_pred             CCceEEEEECCCCCeEEEeeCCceEEEEecCCceeEEEeeccCceEEEEeCCCCCCCCCCCCccccccccccCCcceEee
Q psy12697        140 TEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKGTGGIFEVCWNSRGTPPNPPESMEVDASIEIPQSKATKLI  219 (602)
Q Consensus       140 ~~~V~~~~~s~d~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  219 (602)
                      -.....|+|.|||+++++ ..++.|.+++ .+++  ..+...                             +     ...
T Consensus        28 l~~P~~ia~~pdG~l~V~-e~~g~I~~~d-~~G~--~~~~~~-----------------------------~-----v~~   69 (354)
T 3a9g_A           28 LEVPWSIAPLGGGRYLVT-ERPGRLVLIS-PSGK--KLVASF-----------------------------D-----VAN   69 (354)
T ss_dssp             CSCEEEEEEEETTEEEEE-ETTTEEEEEC-SSCE--EEEEEC-----------------------------C-----CCC
T ss_pred             CCCCeEEEEcCCCeEEEE-eCCCEEEEEe-CCCc--eEeecc-----------------------------c-----eee
Confidence            345789999999985555 5569999887 4454  211100                             0     001


Q ss_pred             CCCcceEEEEEcCC---CCEEEEeeC----C----CcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEee
Q psy12697        220 GHESEVFICAWNPV---KDFLASGSG----D----STARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDW  288 (602)
Q Consensus       220 ~h~~~v~~~~~~~~---~~~l~s~~~----d----g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  288 (602)
                      ........++++|+   +..|+.+..    +    ..|..|+....... ......+... ...     ........++|
T Consensus        70 ~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v~r~~~~~~~~~-~~~~~~l~~~-~~~-----~~~h~~~~l~~  142 (354)
T 3a9g_A           70 VGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRVIRGRLDGSTFK-LKEVKTLIDG-IPG-----AYIHNGGRIRF  142 (354)
T ss_dssp             STTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEEEEEEEECSSSCC-EEEEEEEEEE-EEC-----CSSCCCCCEEE
T ss_pred             cCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceEEEEEEECCCCcC-cCccEEEEEc-CCC-----CCCcCCceEEE
Confidence            12345778999997   555544432    2    55666776543211 0011111111 110     01123467999


Q ss_pred             CCCCCeEEEEeC-------------CCeEEEEcCCCcc--------eeec-ccccCCeEEEEEcc-CCCEEEEEecCC--
Q psy12697        289 NNNGSFLATGSY-------------DGYARIWTSDGSL--------KSTL-GQHKGPIFALKWNK-RGNYILSAGVDK--  343 (602)
Q Consensus       289 ~~~~~~l~~~~~-------------dg~i~i~~~~~~~--------~~~~-~~~~~~i~~~~~~~-~~~~l~~~~~dg--  343 (602)
                      .|||.+.++.+.             .|.|.-++.++..        ...+ .++. ....++|+| +++.+++-....  
T Consensus       143 ~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~npf~~~~i~a~G~r-np~Gla~d~~~g~l~v~d~g~~~~  221 (354)
T 3a9g_A          143 GPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADNPFPNSPIWSYGHR-NPQGIDWHRASGVMVATEHGPVGH  221 (354)
T ss_dssp             CTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSSSTTCCEEEECCS-CCCEEEECTTTCCEEEEECCSSSC
T ss_pred             CCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCCCCCCcEEEEccC-CcceEEEeCCCCCEEEEecCCCCC
Confidence            999987666432             2567777766541        1111 1232 346899999 566444432211  


Q ss_pred             -cEEEEeCCC--------C--------ceeEEeeeccCCeeeeecc-------CCCeEEEe-eCCCeEEEEEcCCC-cee
Q psy12697        344 -TTIIWDAAS--------G--------QCEQQFSFHSAPALDVDWQ-------SNTSFASC-STDQHIHVCKLHSD-KPV  397 (602)
Q Consensus       344 -~i~~wd~~~--------~--------~~~~~~~~~~~~~~~~~~~-------~~~~~~~~-~~~~~i~i~d~~~~-~~~  397 (602)
                       .|.+.....        +        .....+.........+.+.       .++.++++ ...+.|...++... +..
T Consensus       222 dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~  301 (354)
T 3a9g_A          222 DEVNIILKGGNYGWPLATGKAGRGEFVDPVIDTGSETWAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVR  301 (354)
T ss_dssp             CEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECTTCCCCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEE
T ss_pred             cEEEEecCCCcCCCCcccCCCCCCCCcCCEeecCCCCcCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCccc
Confidence             233322100        0        0111111112234455552       23444444 45567888888753 221


Q ss_pred             --eEe-ccCCCCeEEEEECCCCCEEEEEE
Q psy12697        398 --KSF-EGHTNEVNAIKWDPQGLLLASCS  423 (602)
Q Consensus       398 --~~~-~~~~~~i~~~~~~~~~~~l~~~~  423 (602)
                        ..+ .+....+..+++.|||.+.++..
T Consensus       302 ~~~~~~~~~~~rp~~v~~~pDG~lyv~~~  330 (354)
T 3a9g_A          302 KISTFFKNVFGRLRDVVIDDDGGILISTS  330 (354)
T ss_dssp             EEEEECTTTSCCEEEEEECTTSCEEEEEC
T ss_pred             ceeeeccCCCCCeeEEEECCCCcEEEEEe
Confidence              222 22345789999999997766654

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=97.44  E-value=0.032  Score=52.05  Aligned_cols=103  Identities=7%  Similarity=0.001  Sum_probs=63.0

Q ss_pred             CCeEEEEEccCCCEEEEEe-----------------CCCeEEEEeCCCCceeeeecccCCCeeEeeecCCc-eEE-EeeC
Q psy12697        481 GPIFALKWNKRGNYILSAG-----------------VDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNT-SFA-SCST  541 (602)
Q Consensus       481 ~~v~~i~~s~~~~~l~s~~-----------------~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~-~l~-~~~~  541 (602)
                      ...+.+.+.++|++.++..                 ..|.|.-+|.  ++. ..+...-...+.++|+||+ .+. +-+.
T Consensus       165 ~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~--~~~-~~~~~~l~~pNGia~spDg~~lYvadt~  241 (355)
T 3sre_A          165 PSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP--NDV-RVVAEGFDFANGINISPDGKYVYIAELL  241 (355)
T ss_dssp             SSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT--TCC-EEEEEEESSEEEEEECTTSSEEEEEEGG
T ss_pred             CCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEEC--CeE-EEeecCCcccCcceECCCCCEEEEEeCC
Confidence            4567888888888777654                 1255666665  332 2222233456889999999 544 4456


Q ss_pred             CCcEEEeecCCCCceeeeecccccceEEEEecCCcEEEEEECC-CCCeEEEeccC
Q psy12697        542 DQHIHVCKLHSDKPVKSFEGHTTGQLVHSYKGTGGIFEVCWNS-RGDKVGASASD  595 (602)
Q Consensus       542 d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp-dg~~l~~~~~d  595 (602)
                      .+.|..|++.....+..         .+.+...+..-.++.++ +|++.+++.-+
T Consensus       242 ~~~I~~~~~~~~g~l~~---------~~~~~~~g~PDGi~vD~e~G~lwva~~~~  287 (355)
T 3sre_A          242 AHKIHVYEKHANWTLTP---------LRVLSFDTLVDNISVDPVTGDLWVGCHPN  287 (355)
T ss_dssp             GTEEEEEEECTTSCEEE---------EEEEECSSEEEEEEECTTTCCEEEEEESC
T ss_pred             CCeEEEEEECCCCcEec---------CEEEeCCCCCceEEEeCCCCcEEEEecCC
Confidence            78999999864221111         11122245677888999 58877766433

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=97.43  E-value=0.083  Score=49.74  Aligned_cols=239  Identities=10%  Similarity=0.054  Sum_probs=120.2

Q ss_pred             CceeEEeeCCCCCeEEEEeCCCeEEEEcCCCc-ceeec---ccccCCeEEEEEccC---CCEEEEEec----C----CcE
Q psy12697        281 KDVTSLDWNNNGSFLATGSYDGYARIWTSDGS-LKSTL---GQHKGPIFALKWNKR---GNYILSAGV----D----KTT  345 (602)
Q Consensus       281 ~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~-~~~~~---~~~~~~i~~~~~~~~---~~~l~~~~~----d----g~i  345 (602)
                      .....++|.|+|+ |+++..+|.|.+++.++. .+..+   .........|+++|+   +..|+.+..    +    ..|
T Consensus        29 ~~P~~ia~~pdG~-l~V~e~~g~I~~~d~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v  107 (354)
T 3a9g_A           29 EVPWSIAPLGGGR-YLVTERPGRLVLISPSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRV  107 (354)
T ss_dssp             SCEEEEEEEETTE-EEEEETTTEEEEECSSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEEE
T ss_pred             CCCeEEEEcCCCe-EEEEeCCCEEEEEeCCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceEE
Confidence            3468899999997 555566699999986665 11111   122356889999997   455554433    2    567


Q ss_pred             EEEeCCCC--ce-----e-EEeee-ccCCeeeeeccCCCeEEEeeCC--------------CeEEEEEcCCC--------
Q psy12697        346 IIWDAASG--QC-----E-QQFSF-HSAPALDVDWQSNTSFASCSTD--------------QHIHVCKLHSD--------  394 (602)
Q Consensus       346 ~~wd~~~~--~~-----~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~--------------~~i~i~d~~~~--------  394 (602)
                      ..|+....  ..     + ..+.. .......+.|.+++.+.++..+              |.|.-++....        
T Consensus       108 ~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~npf~  187 (354)
T 3a9g_A          108 IRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADNPFP  187 (354)
T ss_dssp             EEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSSST
T ss_pred             EEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCCCC
Confidence            77776543  11     1 11221 1123456888888776665432              45555554422        


Q ss_pred             ceeeEeccCCCCeEEEEECC-CCCEEEEEECCC---eEEEEeCCCCeeeEeeccccccEEEEEECCCCCCCCCCCcceee
Q psy12697        395 KPVKSFEGHTNEVNAIKWDP-QGLLLASCSDDM---TLKIWSLDKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIF  470 (602)
Q Consensus       395 ~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  470 (602)
                      .......++. ....++|+| +++++++-...+   .|.+..  .+...- .......       ....     ..   .
T Consensus       188 ~~~i~a~G~r-np~Gla~d~~~g~l~v~d~g~~~~dei~~i~--~G~nyG-wp~~~g~-------~~~~-----~~---~  248 (354)
T 3a9g_A          188 NSPIWSYGHR-NPQGIDWHRASGVMVATEHGPVGHDEVNIIL--KGGNYG-WPLATGK-------AGRG-----EF---V  248 (354)
T ss_dssp             TCCEEEECCS-CCCEEEECTTTCCEEEEECCSSSCCEEEEEC--TTCBCC-TTTCCSC-------CCCT-----TS---C
T ss_pred             CCcEEEEccC-CcceEEEeCCCCCEEEEecCCCCCcEEEEec--CCCcCC-CCcccCC-------CCCC-----CC---c
Confidence            0111112232 346788998 565444432221   122211  111000 0000000       0000     00   0


Q ss_pred             eeeeccCCccCCeEEEEE-------ccCCCEEEEEeCCCeEEEEeCCCC-cee--eee-cccCCCeeEeeecCCc-eEEE
Q psy12697        471 ILKSTLGQHKGPIFALKW-------NKRGNYILSAGVDKTTIIWDAASG-QCE--QQF-SFHSAPALDVDWQSNT-SFAS  538 (602)
Q Consensus       471 ~~~~~~~~~~~~v~~i~~-------s~~~~~l~s~~~dg~i~iwd~~~~-~~~--~~~-~~~~~~v~~~~~s~~~-~l~~  538 (602)
                      .....+.........++|       ..+|+++++.-..+.|...++... +..  ..+ ......+..+++.||| .+++
T Consensus       249 ~p~~~~~~~~~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~pDG~lyv~  328 (354)
T 3a9g_A          249 DPVIDTGSETWAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVIDDDGGILIS  328 (354)
T ss_dssp             CCSEECTTCCCCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECTTTSCCEEEEEECTTSCEEEE
T ss_pred             CCEeecCCCCcCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeeccCCCCCeeEEEECCCCcEEEE
Confidence            000011012235566777       357777777777788888888753 322  222 2224568899999999 4444


Q ss_pred             e
Q psy12697        539 C  539 (602)
Q Consensus       539 ~  539 (602)
                      .
T Consensus       329 ~  329 (354)
T 3a9g_A          329 T  329 (354)
T ss_dssp             E
T ss_pred             E
Confidence            3

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=97.41  E-value=0.0081  Score=56.48  Aligned_cols=147  Identities=13%  Similarity=0.126  Sum_probs=87.5

Q ss_pred             CCeEEEEEcCCCceeeEeccC----CCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeeeEeeccccccEEEEEECCCC
Q psy12697        383 DQHIHVCKLHSDKPVKSFEGH----TNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHDLQAHNKEIYTIKWSPTG  458 (602)
Q Consensus       383 ~~~i~i~d~~~~~~~~~~~~~----~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~  458 (602)
                      ++.|+..++.....-+.+...    ...|..+..+|+|++||..+. ..|.|-.+..+.....-......+..-.|.   
T Consensus        40 ~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~-~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~---  115 (452)
T 3pbp_A           40 DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFND-NEIFVMEVPWGYSNVEDVSIQDAFQIFHYS---  115 (452)
T ss_dssp             TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECS-SEEEEEECCTTCSCCCCHHHHHTTEEEEEE---
T ss_pred             CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecC-CeEEEEEecCccccCcccccccccceeEEE---
Confidence            467777777644434444332    236888999999999999865 578998887432111000000111111110   


Q ss_pred             CCCCCCCcceeeeeeeccCCccCCeEEEEEcc---CCCEEEEEeCCCeEEEEeCCCCc--eeeeec---------ccCCC
Q psy12697        459 PETSNPNMSLIFILKSTLGQHKGPIFALKWNK---RGNYILSAGVDKTTIIWDAASGQ--CEQQFS---------FHSAP  524 (602)
Q Consensus       459 ~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~---~~~~l~s~~~dg~i~iwd~~~~~--~~~~~~---------~~~~~  524 (602)
                                   +.........+|..+.|+|   .+..|++-..|+.|++||+....  +. .++         .....
T Consensus       116 -------------l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~e  181 (452)
T 3pbp_A          116 -------------IDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVND  181 (452)
T ss_dssp             -------------GGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCC
T ss_pred             -------------cCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCcccce
Confidence                         0000111356788888887   45689999999999999998522  11 222         12256


Q ss_pred             eeEeeecCCc-eEEE--eeCCCcEEE
Q psy12697        525 ALDVDWQSNT-SFAS--CSTDQHIHV  547 (602)
Q Consensus       525 v~~~~~s~~~-~l~~--~~~d~~i~i  547 (602)
                      |.+++|.+++ .|..  ....|.|+-
T Consensus       182 v~S~~Fg~~~lTLYvl~~t~~GDIYA  207 (452)
T 3pbp_A          182 ITDLEFSKDGLTLYCLNTTEGGDIFA  207 (452)
T ss_dssp             EEEEEECTTSSCEEEEECTTSCEEEE
T ss_pred             EEEEEEcCCCcEEEEEecCCCCCEEE
Confidence            8899999988 4444  457787764

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=97.38  E-value=0.097  Score=49.26  Aligned_cols=248  Identities=9%  Similarity=0.031  Sum_probs=122.1

Q ss_pred             CceeEEeeCCCCCeEEEEeCCCeEEEEcCCCcceeec-------ccccCCeEEEEEccC---CCEEEEEe-c-------C
Q psy12697        281 KDVTSLDWNNNGSFLATGSYDGYARIWTSDGSLKSTL-------GQHKGPIFALKWNKR---GNYILSAG-V-------D  342 (602)
Q Consensus       281 ~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~-------~~~~~~i~~~~~~~~---~~~l~~~~-~-------d  342 (602)
                      .....|+|.|+|+.++++...|.|++++.++.....+       .........++++|+   +..|..+. .       .
T Consensus        18 ~~P~~i~~~pdG~~l~V~e~~G~i~~~~~~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~   97 (353)
T 2g8s_A           18 DHPWALAFLPDNHGMLITLRGGELRHWQAGKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAG   97 (353)
T ss_dssp             SSEEEEEECSTTCCEEEEETTTEEEEEETTTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCEE
T ss_pred             CCcEEEEEcCCCCEEEEEeCCceEEEEeCCCceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCce
Confidence            3468999999998455556789999998665432111       122345789999995   44554442 2       2


Q ss_pred             CcEEEEeCCCC--ce--eEE-eee------ccCCeeeeeccCCCeEEEeeCC--------------CeEEEEEcCCCc--
Q psy12697        343 KTTIIWDAASG--QC--EQQ-FSF------HSAPALDVDWQSNTSFASCSTD--------------QHIHVCKLHSDK--  395 (602)
Q Consensus       343 g~i~~wd~~~~--~~--~~~-~~~------~~~~~~~~~~~~~~~~~~~~~~--------------~~i~i~d~~~~~--  395 (602)
                      ..|..++....  ..  ... +..      .......+.|.+++.|.++..+              |.|.-++....-  
T Consensus        98 ~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~p~  177 (353)
T 2g8s_A           98 TAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEIPD  177 (353)
T ss_dssp             EEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCCCT
T ss_pred             eEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCCCCC
Confidence            35666665432  11  111 111      1122457889999887766533              467667665320  


Q ss_pred             ----------eeeEe-ccCCCCeEEEEECC-CCCEEEEEEC-CCeEEEEeCCCCeeeEeeccccccEEEEEECCCCCCCC
Q psy12697        396 ----------PVKSF-EGHTNEVNAIKWDP-QGLLLASCSD-DMTLKIWSLDKDNCVHDLQAHNKEIYTIKWSPTGPETS  462 (602)
Q Consensus       396 ----------~~~~~-~~~~~~i~~~~~~~-~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~  462 (602)
                                ....+ .++ .....++|+| +|+++++-.. ++.=.|.-+..+...- .......   ..+.+  ....
T Consensus       178 ~npf~~~~~~~~~i~a~G~-rnp~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G~nyG-wp~~~~~---~~~~~--~~~~  250 (353)
T 2g8s_A          178 DNPFIKESGVRAEIWSYGI-RNPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNYG-WPLATWG---INYSG--FKIP  250 (353)
T ss_dssp             TCTTTTSTTSCTTEEEECC-SEEEEEEEETTTTEEEEEEECSBSCEEEECCCTTCBCC-TTTBCSS---BCTTS--SCCT
T ss_pred             CCCCcCCCCCCccEEEEcC-cCccceEEECCCCCEEEEecCCCCCcEEeEeccCCcCC-CCCccCC---CCCCC--CccC
Confidence                      11111 223 2367899999 5544443221 1111222222221100 0000000   00000  0000


Q ss_pred             CC---CcceeeeeeeccCCccCCeEEEEEcc-------CCCEEEEEeCCCeEEEEeCCCCceeee---ecccCCCeeEee
Q psy12697        463 NP---NMSLIFILKSTLGQHKGPIFALKWNK-------RGNYILSAGVDKTTIIWDAASGQCEQQ---FSFHSAPALDVD  529 (602)
Q Consensus       463 ~~---~~~~~~~~~~~~~~~~~~v~~i~~s~-------~~~~l~s~~~dg~i~iwd~~~~~~~~~---~~~~~~~v~~~~  529 (602)
                      ..   .......-...+ .+......++|..       +|+++++.-..+.|...++..++....   +......+..++
T Consensus       251 ~~~~~~~~~~~~P~~~~-~~~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~  329 (353)
T 2g8s_A          251 EAKGEIVAGTEQPVFYW-KDSPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVR  329 (353)
T ss_dssp             TCCBSSCTTSCCCSEEE-SSCCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEE
T ss_pred             cccCCCCCCccCCeEEe-CCCcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEE
Confidence            00   000000000011 1224566777753       577777777788888888876543322   222235788999


Q ss_pred             ecCCceE
Q psy12697        530 WQSNTSF  536 (602)
Q Consensus       530 ~s~~~~l  536 (602)
                      +.|||.|
T Consensus       330 ~~pdG~l  336 (353)
T 2g8s_A          330 TGPDGYL  336 (353)
T ss_dssp             ECTTSCE
T ss_pred             ECCCCcE
Confidence            9999933

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=97.31  E-value=0.035  Score=51.00  Aligned_cols=226  Identities=9%  Similarity=0.055  Sum_probs=108.9

Q ss_pred             CCCeEEEEe-CC-----CeEEEEcCCCcceeecccccCC-eEEEEEccCCCEEEEEecC-----CcEEEEeCCCCc---e
Q psy12697        291 NGSFLATGS-YD-----GYARIWTSDGSLKSTLGQHKGP-IFALKWNKRGNYILSAGVD-----KTTIIWDAASGQ---C  355 (602)
Q Consensus       291 ~~~~l~~~~-~d-----g~i~i~~~~~~~~~~~~~~~~~-i~~~~~~~~~~~l~~~~~d-----g~i~~wd~~~~~---~  355 (602)
                      ++.+++.|+ .+     ..+..||........+.....+ ........++..++.|+.+     ..+.+||..+.+   .
T Consensus        14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W   93 (301)
T 2vpj_A           14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYVASVSLHDRIYVIGGYDGRSRLSSVECLDYTADEDGVW   93 (301)
T ss_dssp             CEEEEEECCEETTTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTCCTTCCC
T ss_pred             CCEEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCChhhccccEEEECCEEEEEcCCCCCccCceEEEEECCCCCCCee
Confidence            445666666 33     3678888765443333211111 1111112356667777754     468899988876   3


Q ss_pred             eEEeeeccC-CeeeeeccCCCeEEEeeCC-----CeEEEEEcCCCceee--EeccCCCCeEEEEECCCCCEEEEEECC--
Q psy12697        356 EQQFSFHSA-PALDVDWQSNTSFASCSTD-----QHIHVCKLHSDKPVK--SFEGHTNEVNAIKWDPQGLLLASCSDD--  425 (602)
Q Consensus       356 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-----~~i~i~d~~~~~~~~--~~~~~~~~i~~~~~~~~~~~l~~~~~d--  425 (602)
                      ...-..... .-..+....+..++.|+.+     ..+.+||..+.+-..  .+......-..+.+  ++++++.|+.+  
T Consensus        94 ~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~  171 (301)
T 2vpj_A           94 YSVAPMNVRRGLAGATTLGDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVA--SGVIYCLGGYDGL  171 (301)
T ss_dssp             EEECCCSSCCBSCEEEEETTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEE--TTEEEEECCBCSS
T ss_pred             EECCCCCCCccceeEEEECCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEE--CCEEEEECCCCCC
Confidence            332221111 1112222344556666543     468889987765322  22111111222222  56677777654  


Q ss_pred             ---CeEEEEeCCCCeeeEeeccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCC-
Q psy12697        426 ---MTLKIWSLDKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVD-  501 (602)
Q Consensus       426 ---g~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d-  501 (602)
                         ..+.+||+.+.+-... ..          .|.                     ....-..+.  -++++++.|+.+ 
T Consensus       172 ~~~~~~~~~d~~~~~W~~~-~~----------~p~---------------------~r~~~~~~~--~~~~i~v~GG~~~  217 (301)
T 2vpj_A          172 NILNSVEKYDPHTGHWTNV-TP----------MAT---------------------KRSGAGVAL--LNDHIYVVGGFDG  217 (301)
T ss_dssp             CBCCCEEEEETTTTEEEEE-CC----------CSS---------------------CCBSCEEEE--ETTEEEEECCBCS
T ss_pred             cccceEEEEeCCCCcEEeC-CC----------CCc---------------------ccccceEEE--ECCEEEEEeCCCC
Confidence               3467777765432111 00          000                     000111111  256777777764 


Q ss_pred             ----CeEEEEeCCCCceeeeecccCCCe-eEeeecCCc-eEEEeeCC-----CcEEEeecCCC
Q psy12697        502 ----KTTIIWDAASGQCEQQFSFHSAPA-LDVDWQSNT-SFASCSTD-----QHIHVCKLHSD  553 (602)
Q Consensus       502 ----g~i~iwd~~~~~~~~~~~~~~~~v-~~~~~s~~~-~l~~~~~d-----~~i~iw~~~~~  553 (602)
                          ..+.+||+.+.+-...-....... .+++.. ++ .++.|+.+     ..+.+||+++.
T Consensus       218 ~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~i~v~GG~~~~~~~~~v~~yd~~~~  279 (301)
T 2vpj_A          218 TAHLSSVEAYNIRTDSWTTVTSMTTPRCYVGATVL-RGRLYAIAGYDGNSLLSSIECYDPIID  279 (301)
T ss_dssp             SSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEECCBCSSSBEEEEEEEETTTT
T ss_pred             CcccceEEEEeCCCCcEEECCCCCCcccceeEEEE-CCEEEEEcCcCCCcccccEEEEcCCCC
Confidence                468999998765433211111111 122222 45 66667655     35777887654

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=97.11  E-value=0.05  Score=51.21  Aligned_cols=114  Identities=11%  Similarity=0.186  Sum_probs=76.4

Q ss_pred             CeEEEEEccCCCEEEEEeCCCeEEEEeCCCCce------------eeeecc------cCCCeeEeeecCCc----eEEEe
Q psy12697        482 PIFALKWNKRGNYILSAGVDKTTIIWDAASGQC------------EQQFSF------HSAPALDVDWQSNT----SFASC  539 (602)
Q Consensus       482 ~v~~i~~s~~~~~l~s~~~dg~i~iwd~~~~~~------------~~~~~~------~~~~v~~~~~s~~~----~l~~~  539 (602)
                      .|..+..||+|++||..+. ..|.|-.+..+..            .+.+..      ...+|..+.|+|-+    .|++-
T Consensus        67 ~i~qlvlSpsG~lLAl~g~-~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVL  145 (452)
T 3pbp_A           67 DTFHVISSTSGDLLCLFND-NEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVL  145 (452)
T ss_dssp             TTCEEEECTTSSEEEEECS-SEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEE
T ss_pred             ceeEEEECCCCCEEEEecC-CeEEEEEecCccccCcccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEE
Confidence            4567888889999998864 4688888773321            112221      25679999999965    79999


Q ss_pred             eCCCcEEEeecCCC--CceeeeecccccceEEEEecCCcEEEEEECCCCCeEEEec--cCCeEE
Q psy12697        540 STDQHIHVCKLHSD--KPVKSFEGHTTGQLVHSYKGTGGIFEVCWNSRGDKVGASA--SDGSVF  599 (602)
Q Consensus       540 ~~d~~i~iw~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~--~dg~v~  599 (602)
                      ..|+.|++||+...  +|. .++... + ....-.....|.+++|.+++-.|.+..  .+|-|+
T Consensus       146 tsD~~Ir~yDl~~s~~~P~-~L~k~~-~-~fg~d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIY  206 (452)
T 3pbp_A          146 KEDDTITMFDILNSQEKPI-VLNKPN-N-SFGLDARVNDITDLEFSKDGLTLYCLNTTEGGDIF  206 (452)
T ss_dssp             ETTSCEEEEETTCTTSCCE-EESCCC-S-EEESCSSCCCEEEEEECTTSSCEEEEECTTSCEEE
T ss_pred             ecCCEEEEEEcccCCCCCc-chhccc-c-ccCCCcccceEEEEEEcCCCcEEEEEecCCCCCEE
Confidence            99999999999863  233 333111 1 000000125689999999998887744  788775

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=97.10  E-value=0.24  Score=48.32  Aligned_cols=34  Identities=9%  Similarity=0.143  Sum_probs=25.0

Q ss_pred             CCceEEEEECCCCCeEEEeeCCceEEEEecCCce
Q psy12697        140 TEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQ  173 (602)
Q Consensus       140 ~~~V~~~~~s~d~~~l~s~~~d~~v~iwd~~~~~  173 (602)
                      -...+.|+|.|||+++++-...+.|.+++..+++
T Consensus        26 l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~   59 (454)
T 1cru_A           26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGS   59 (454)
T ss_dssp             CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCC
T ss_pred             CCCceEEEEcCCCcEEEEEcCCCEEEEEECCCCc
Confidence            3456799999999988776544578888765554

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=96.95  E-value=0.021  Score=52.76  Aligned_cols=111  Identities=11%  Similarity=0.062  Sum_probs=73.9

Q ss_pred             CEEEEEecCCcEEEEeCCCCceeEEeeecc-CCeeeee---ccCCCeEEEe--eCCCeEEEEEcCCCceeeEecc----C
Q psy12697        334 NYILSAGVDKTTIIWDAASGQCEQQFSFHS-APALDVD---WQSNTSFASC--STDQHIHVCKLHSDKPVKSFEG----H  403 (602)
Q Consensus       334 ~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~-~~~~~~~---~~~~~~~~~~--~~~~~i~i~d~~~~~~~~~~~~----~  403 (602)
                      ..++.++.||.|.-+|..+|+....+.... .++....   ...++.++++  +.||.|+.++..++.....+..    .
T Consensus        11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~   90 (339)
T 2be1_A           11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVS   90 (339)
T ss_dssp             EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHT
T ss_pred             CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeecccccee
Confidence            478899999999999999999999887651 2222211   1113344444  5899999999988754433321    1


Q ss_pred             CCCeEE---EEE-C----CCCCEEEEEECCCeEEEEeCCCCeeeEeecc
Q psy12697        404 TNEVNA---IKW-D----PQGLLLASCSDDMTLKIWSLDKDNCVHDLQA  444 (602)
Q Consensus       404 ~~~i~~---~~~-~----~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~  444 (602)
                      ..++..   ..+ .    ..+..+++|+.+|++.-.|+++|+.+..+..
T Consensus        91 ~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~  139 (339)
T 2be1_A           91 TSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGP  139 (339)
T ss_dssp             TCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEEST
T ss_pred             ccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEec
Confidence            112221   000 0    1455788999999999999999999988764

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=96.93  E-value=0.26  Score=45.96  Aligned_cols=189  Identities=11%  Similarity=0.139  Sum_probs=99.9

Q ss_pred             eEEEEEccCCCEEEEE------------ecCCcEEEEeCCCCc-eeEEeeec-------cCCeeeeeccC--CC--eEEE
Q psy12697        324 IFALKWNKRGNYILSA------------GVDKTTIIWDAASGQ-CEQQFSFH-------SAPALDVDWQS--NT--SFAS  379 (602)
Q Consensus       324 i~~~~~~~~~~~l~~~------------~~dg~i~~wd~~~~~-~~~~~~~~-------~~~~~~~~~~~--~~--~~~~  379 (602)
                      ..++...|+|..++++            ..+|.|.++|..+.. ....+...       ......+.+.+  ++  .+++
T Consensus        52 ~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~V  131 (355)
T 3sre_A           52 SEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLV  131 (355)
T ss_dssp             CCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEE
T ss_pred             cceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEE
Confidence            3455566666444443            268999999987421 12222221       22445555433  22  3444


Q ss_pred             ee-C--CCeEEEEEcCCCc----eeeEeccC-CCCeEEEEECCCCCEEEEEEC---C--------------CeEEEEeCC
Q psy12697        380 CS-T--DQHIHVCKLHSDK----PVKSFEGH-TNEVNAIKWDPQGLLLASCSD---D--------------MTLKIWSLD  434 (602)
Q Consensus       380 ~~-~--~~~i~i~d~~~~~----~~~~~~~~-~~~i~~~~~~~~~~~l~~~~~---d--------------g~i~iwd~~  434 (602)
                      +. .  +..|.+|++....    .+..+.+. -...+.+.+.++|.+.++...   |              |.|..+|. 
T Consensus       132 vnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~-  210 (355)
T 3sre_A          132 VNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP-  210 (355)
T ss_dssp             EECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT-
T ss_pred             EECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEEC-
Confidence            43 3  4677787765432    22333332 235788999999987776541   1              22222221 


Q ss_pred             CCeeeEeeccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEe-CCCeEEEEeCCC-C
Q psy12697        435 KDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAG-VDKTTIIWDAAS-G  512 (602)
Q Consensus       435 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~-~dg~i~iwd~~~-~  512 (602)
                       ++           +..                        +...-..-+.++||||++.|..+. ..+.|..|++.. +
T Consensus       211 -~~-----------~~~------------------------~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g  254 (355)
T 3sre_A          211 -ND-----------VRV------------------------VAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANW  254 (355)
T ss_dssp             -TC-----------CEE------------------------EEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTS
T ss_pred             -Ce-----------EEE------------------------eecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCC
Confidence             10           000                        001123457899999998877665 568899999863 3


Q ss_pred             cee--eeecccCCCeeEeeecC-Cc-eEEEeeCC-CcEEEeec
Q psy12697        513 QCE--QQFSFHSAPALDVDWQS-NT-SFASCSTD-QHIHVCKL  550 (602)
Q Consensus       513 ~~~--~~~~~~~~~v~~~~~s~-~~-~l~~~~~d-~~i~iw~~  550 (602)
                      +..  ..+. ..+..-.+++.+ +| .++++..+ +.|..|+-
T Consensus       255 ~l~~~~~~~-~~g~PDGi~vD~e~G~lwva~~~~g~~v~~~~P  296 (355)
T 3sre_A          255 TLTPLRVLS-FDTLVDNISVDPVTGDLWVGCHPNGMRIFFYDA  296 (355)
T ss_dssp             CEEEEEEEE-CSSEEEEEEECTTTCCEEEEEESCHHHHHSCCT
T ss_pred             cEecCEEEe-CCCCCceEEEeCCCCcEEEEecCCceEEEEECC
Confidence            321  2332 244567788888 58 44545433 34444443

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=96.90  E-value=0.084  Score=44.73  Aligned_cols=141  Identities=8%  Similarity=-0.029  Sum_probs=83.3

Q ss_pred             CceeEEeeCCCCCeEEEEeCCCeEEEEcCCCcceeecccccCC--------eEEEEEccCCCEEEEEecCCcEEEEeCCC
Q psy12697        281 KDVTSLDWNNNGSFLATGSYDGYARIWTSDGSLKSTLGQHKGP--------IFALKWNKRGNYILSAGVDKTTIIWDAAS  352 (602)
Q Consensus       281 ~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~--------i~~~~~~~~~~~l~~~~~dg~i~~wd~~~  352 (602)
                      ..++.++|+|+|.+.++  .+|.+.-.+...............        ..++.|.|+|.+.++  .||.|.-++-.+
T Consensus        41 ~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~pP~  116 (236)
T 1tl2_A           41 SNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKASPPQ  116 (236)
T ss_dssp             TTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECTTSCEEEE--ETTEEEEESCCC
T ss_pred             ccceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEecccccccceEEEECCCCCEEEe--CCCEEEEeCCCc
Confidence            46789999999987766  778776666532111111111112        478999999987766  569998887644


Q ss_pred             CceeEE------e-eeccCCeeeeeccCCCeEEEeeCCCeEEEEEcCCCc------eeeEec-cCCCCeEEEEECCCCCE
Q psy12697        353 GQCEQQ------F-SFHSAPALDVDWQSNTSFASCSTDQHIHVCKLHSDK------PVKSFE-GHTNEVNAIKWDPQGLL  418 (602)
Q Consensus       353 ~~~~~~------~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~------~~~~~~-~~~~~i~~~~~~~~~~~  418 (602)
                      .....-      + ...-..+..+.+.|++.|.+.. ++.++-....+..      ....+- ..-..-+.+.|.|++.+
T Consensus       117 ~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~-dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~G~l  195 (236)
T 1tl2_A          117 SDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH-GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSVGTL  195 (236)
T ss_dssp             STTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE-TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTTSCE
T ss_pred             CCCCceeccccEeccCCCCceEEEEECCCceEEEEe-CCcEEecCCCCCCCcccccccceeccCCcceEEEEEECCCCcE
Confidence            221110      0 1111356788889999988888 8886543332211      011111 22223455778999887


Q ss_pred             EEEEECCCeE
Q psy12697        419 LASCSDDMTL  428 (602)
Q Consensus       419 l~~~~~dg~i  428 (602)
                      .++.  +|.+
T Consensus       196 ~~v~--~g~~  203 (236)
T 1tl2_A          196 FGVQ--GGKF  203 (236)
T ss_dssp             EEEE--TTEE
T ss_pred             EEEe--CCeE
Confidence            7766  6643

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=96.87  E-value=0.067  Score=49.08  Aligned_cols=143  Identities=14%  Similarity=0.160  Sum_probs=76.0

Q ss_pred             CCCeEEEEeCC-----CeEEEEcCCCcceeeccc---ccCCeEEEEEccCCCEEEEEecC-----CcEEEEeCCCCceeE
Q psy12697        291 NGSFLATGSYD-----GYARIWTSDGSLKSTLGQ---HKGPIFALKWNKRGNYILSAGVD-----KTTIIWDAASGQCEQ  357 (602)
Q Consensus       291 ~~~~l~~~~~d-----g~i~i~~~~~~~~~~~~~---~~~~i~~~~~~~~~~~l~~~~~d-----g~i~~wd~~~~~~~~  357 (602)
                      ++++++.|+.+     ..+.+||.....-..+..   ....-..+.  -+++.++.|+.+     ..+.+||..+.+...
T Consensus       112 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~  189 (301)
T 2vpj_A          112 GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVV--ASGVIYCLGGYDGLNILNSVEKYDPHTGHWTN  189 (301)
T ss_dssp             TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEE--ETTEEEEECCBCSSCBCCCEEEEETTTTEEEE
T ss_pred             CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEE--ECCEEEEECCCCCCcccceEEEEeCCCCcEEe
Confidence            56777777654     368888876543332221   111111222  256666777654     468889988876544


Q ss_pred             EeeeccCC-eeeeeccCCCeEEEeeCC-----CeEEEEEcCCCceeeE--eccCCCCeEEEEECCCCCEEEEEECC----
Q psy12697        358 QFSFHSAP-ALDVDWQSNTSFASCSTD-----QHIHVCKLHSDKPVKS--FEGHTNEVNAIKWDPQGLLLASCSDD----  425 (602)
Q Consensus       358 ~~~~~~~~-~~~~~~~~~~~~~~~~~~-----~~i~i~d~~~~~~~~~--~~~~~~~i~~~~~~~~~~~l~~~~~d----  425 (602)
                      .-...... -..+....+..++.|+.+     ..+.+||+.+.+-...  +.........+.+  ++++++.|+.+    
T Consensus       190 ~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~  267 (301)
T 2vpj_A          190 VTPMATKRSGAGVALLNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYVGATVL--RGRLYAIAGYDGNSL  267 (301)
T ss_dssp             ECCCSSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSSB
T ss_pred             CCCCCcccccceEEEECCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCcccceeEEEE--CCEEEEEcCcCCCcc
Confidence            32211111 112233345556677654     4689999987653222  1111111222333  56777777755    


Q ss_pred             -CeEEEEeCCCCe
Q psy12697        426 -MTLKIWSLDKDN  437 (602)
Q Consensus       426 -g~i~iwd~~~~~  437 (602)
                       ..+.+||+.+.+
T Consensus       268 ~~~v~~yd~~~~~  280 (301)
T 2vpj_A          268 LSSIECYDPIIDS  280 (301)
T ss_dssp             EEEEEEEETTTTE
T ss_pred             cccEEEEcCCCCe
Confidence             357788887653

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=96.85  E-value=0.11  Score=47.55  Aligned_cols=224  Identities=12%  Similarity=0.094  Sum_probs=106.0

Q ss_pred             CCeEEEEeCC----CeEEEEcCCCcceeecccccCC--eEEEEEccCCCEEEEEecC-----CcEEEEeCCCCceeEEee
Q psy12697        292 GSFLATGSYD----GYARIWTSDGSLKSTLGQHKGP--IFALKWNKRGNYILSAGVD-----KTTIIWDAASGQCEQQFS  360 (602)
Q Consensus       292 ~~~l~~~~~d----g~i~i~~~~~~~~~~~~~~~~~--i~~~~~~~~~~~l~~~~~d-----g~i~~wd~~~~~~~~~~~  360 (602)
                      +.+++.|+.+    ..+..||........+.....+  -.++.. -++..++.|+.+     ..+.+||..+.+....-.
T Consensus        16 ~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~   94 (302)
T 2xn4_A           16 KLMVVVGGQAPKAIRSVECYDFKEERWHQVAELPSRRCRAGMVY-MAGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVAN   94 (302)
T ss_dssp             EEEEEECCBSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEESCBCSSSBCCCEEEEETTTTEEEEECC
T ss_pred             CEEEEECCCCCCCCCcEEEEcCcCCcEeEcccCCcccccceEEE-ECCEEEEEeCcCCCccccceEEECCCCCceeeCCC
Confidence            3455556543    3577788765443333211111  011222 256666677654     358889988776443322


Q ss_pred             eccCC-eeeeeccCCCeEEEeeCCC-----eEEEEEcCCCceeeE--eccCCCCeEEEEECCCCCEEEEEECC-------
Q psy12697        361 FHSAP-ALDVDWQSNTSFASCSTDQ-----HIHVCKLHSDKPVKS--FEGHTNEVNAIKWDPQGLLLASCSDD-------  425 (602)
Q Consensus       361 ~~~~~-~~~~~~~~~~~~~~~~~~~-----~i~i~d~~~~~~~~~--~~~~~~~i~~~~~~~~~~~l~~~~~d-------  425 (602)
                      ..... -..++...+..++.|+.++     .+.+||..+.+-...  +.........+.+  ++++++.|+.+       
T Consensus        95 ~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~  172 (302)
T 2xn4_A           95 MRDRRSTLGAAVLNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVV--GGLLYAVGGYDVASRQCL  172 (302)
T ss_dssp             CSSCCBSCEEEEETTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCEETTTTEEC
T ss_pred             CCccccceEEEEECCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEEE--CCEEEEEeCCCCCCCccc
Confidence            21111 1222233455566776543     577888877643221  1111111222222  55666666542       


Q ss_pred             CeEEEEeCCCCeeeEeeccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCC----
Q psy12697        426 MTLKIWSLDKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVD----  501 (602)
Q Consensus       426 g~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d----  501 (602)
                      ..+.+||+.+.+-... ..          .|.                     .......+.  -++++++.|+.+    
T Consensus       173 ~~~~~yd~~~~~W~~~-~~----------~p~---------------------~r~~~~~~~--~~~~iyv~GG~~~~~~  218 (302)
T 2xn4_A          173 STVECYNATTNEWTYI-AE----------MST---------------------RRSGAGVGV--LNNLLYAVGGHDGPLV  218 (302)
T ss_dssp             CCEEEEETTTTEEEEE-CC----------CSS---------------------CCBSCEEEE--ETTEEEEECCBSSSSB
T ss_pred             cEEEEEeCCCCcEEEC-CC----------Ccc---------------------ccccccEEE--ECCEEEEECCCCCCcc
Confidence            3467777765432111 00          000                     000111111  256777777764    


Q ss_pred             -CeEEEEeCCCCceeeeecccCCCe-eEeeecCCc-eEEEeeCCC-----cEEEeecCCC
Q psy12697        502 -KTTIIWDAASGQCEQQFSFHSAPA-LDVDWQSNT-SFASCSTDQ-----HIHVCKLHSD  553 (602)
Q Consensus       502 -g~i~iwd~~~~~~~~~~~~~~~~v-~~~~~s~~~-~l~~~~~d~-----~i~iw~~~~~  553 (602)
                       ..+.+||+.+.+-...-....... .+++.. ++ .++.|+.++     .+.+||+.+.
T Consensus       219 ~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~-~~~i~v~GG~~~~~~~~~v~~yd~~~~  277 (302)
T 2xn4_A          219 RKSVEVYDPTTNAWRQVADMNMCRRNAGVCAV-NGLLYVVGGDDGSCNLASVEYYNPTTD  277 (302)
T ss_dssp             CCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEECCBCSSSBCCCEEEEETTTT
T ss_pred             cceEEEEeCCCCCEeeCCCCCCccccCeEEEE-CCEEEEECCcCCCcccccEEEEcCCCC
Confidence             368999998765432211111111 112222 45 666676553     4788887654

>1uuj_A Platelet-activating factor acetylhydrolase IB ALP subunit; mitosis, neuroge cytoskeleton, cell division, microtubule; 1.75A {Mus musculus} SCOP: a.221.1.1

Probab=96.82  E-value=4.3e-05  Score=52.80  Aligned_cols=60  Identities=22%  Similarity=0.324  Sum_probs=44.0

Q ss_pred             cchhhhhhhhhhhcCceeeeeccccccCCccCCC-----CCCcCCchhHHHHHHhhceeEEEeee
Q psy12697          6 DEVNFLVYRYLQESGFQHSAYTFGIESHISQSNI-----DGALVPPAALLSIIQKGLQYTEAEIS   65 (602)
Q Consensus         6 ~e~n~li~ryL~e~g~~~~a~~~~~e~~~~~~~~-----~~~~~~~~~li~~~qk~l~~~~~e~~   65 (602)
                      +|||..|..||..+||..++.+|.+|..++.+..     .+-.-+.+.=|-.|||.++-.|.+..
T Consensus        11 eEL~kaI~~YL~~~~~~~~~~alr~e~~~~~~~~~~~ky~gLLEKKWTSViRLQKKImdLE~~~~   75 (88)
T 1uuj_A           11 DELNRAIADYLRSNGYEEAYSVFKKEAELDMNEELDKKYAGLLEKKWTSVIRLQKKVMELESKLN   75 (88)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHTTCCCCHHHHHHHTTHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCcHHHHHHHHHHhcCCCCchhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence            7999999999999999999999999987764311     11122333445788999887664443

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=96.80  E-value=0.32  Score=45.11  Aligned_cols=106  Identities=15%  Similarity=0.190  Sum_probs=65.2

Q ss_pred             cCCeEEEEEccCCCEEEEEecCCcEEEEeCCCCceeEE--e----eeccCCeeeeeccCC----CeEEEe---eCCCeEE
Q psy12697        321 KGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQ--F----SFHSAPALDVDWQSN----TSFASC---STDQHIH  387 (602)
Q Consensus       321 ~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~--~----~~~~~~~~~~~~~~~----~~~~~~---~~~~~i~  387 (602)
                      -...+.|+|.|+|+.+++--..|.|++++..+++....  +    .........++++|+    +.+.+.   ..++.|.
T Consensus        31 L~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~  110 (347)
T 3das_A           31 LNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRIV  110 (347)
T ss_dssp             CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEEE
T ss_pred             CCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEEE
Confidence            34578999999998666665589999998766654221  1    112445778899884    555443   2455666


Q ss_pred             EEEcCCC----------cee-eEec-cCCCCeEEEEECCCCCEEEEEECCC
Q psy12697        388 VCKLHSD----------KPV-KSFE-GHTNEVNAIKWDPQGLLLASCSDDM  426 (602)
Q Consensus       388 i~d~~~~----------~~~-~~~~-~~~~~i~~~~~~~~~~~l~~~~~dg  426 (602)
                      -|.+..+          +.+ ..+. ........|.|.|||.+.++.++.+
T Consensus       111 R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~  161 (347)
T 3das_A          111 RMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESG  161 (347)
T ss_dssp             EEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTT
T ss_pred             EEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCC
Confidence            6766542          111 1121 1122346799999998877766544

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=96.77  E-value=0.2  Score=46.05  Aligned_cols=140  Identities=6%  Similarity=0.005  Sum_probs=71.3

Q ss_pred             CeEEEEeCC--CeEEEEcCCCcceeecccc---cCCeEEEEEccCCCEEEEEecC----CcEEEEeCCCCceeEEeeecc
Q psy12697        293 SFLATGSYD--GYARIWTSDGSLKSTLGQH---KGPIFALKWNKRGNYILSAGVD----KTTIIWDAASGQCEQQFSFHS  363 (602)
Q Consensus       293 ~~l~~~~~d--g~i~i~~~~~~~~~~~~~~---~~~i~~~~~~~~~~~l~~~~~d----g~i~~wd~~~~~~~~~~~~~~  363 (602)
                      .+++.|+.+  ..+..||.....-..+...   ......+.  -++..++.|+.+    ..+.+||..+.+....-....
T Consensus        13 ~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~   90 (306)
T 3ii7_A           13 YRIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVF--WDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPT   90 (306)
T ss_dssp             EEEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEE--ETTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSS
T ss_pred             eEEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEE--ECCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCc
Confidence            345556543  5688888765443333211   11112222  256666777654    578889988876544322221


Q ss_pred             CC-eeeeeccCCCeEEEeeCC------CeEEEEEcCCCceeeE--eccCCCCeEEEEECCCCCEEEEEEC---------C
Q psy12697        364 AP-ALDVDWQSNTSFASCSTD------QHIHVCKLHSDKPVKS--FEGHTNEVNAIKWDPQGLLLASCSD---------D  425 (602)
Q Consensus       364 ~~-~~~~~~~~~~~~~~~~~~------~~i~i~d~~~~~~~~~--~~~~~~~i~~~~~~~~~~~l~~~~~---------d  425 (602)
                      .. -..++...+..++.|+.+      ..+.+||..+.+-...  +......-..+.+  ++++++.|+.         -
T Consensus        91 ~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~  168 (306)
T 3ii7_A           91 PRDSLAACAAEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVEA--NGLIYVCGGSLGNNVSGRVL  168 (306)
T ss_dssp             CCBSCEEEEETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCEESCTTTCEEC
T ss_pred             cccceeEEEECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEEE--CCEEEEECCCCCCCCccccc
Confidence            11 112223345556677654      4688999887653221  1111111122222  5666666653         2


Q ss_pred             CeEEEEeCCCC
Q psy12697        426 MTLKIWSLDKD  436 (602)
Q Consensus       426 g~i~iwd~~~~  436 (602)
                      ..+.+||+.+.
T Consensus       169 ~~~~~yd~~~~  179 (306)
T 3ii7_A          169 NSCEVYDPATE  179 (306)
T ss_dssp             CCEEEEETTTT
T ss_pred             ceEEEeCCCCC
Confidence            34777777664

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=96.76  E-value=0.46  Score=46.32  Aligned_cols=104  Identities=13%  Similarity=0.182  Sum_probs=62.3

Q ss_pred             CCeEEEEEccCCCEEEEEecCCcEEEEeCCCCceeEEeee--------ccCCeeeeeccC----CCeEEEeeC-------
Q psy12697        322 GPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSF--------HSAPALDVDWQS----NTSFASCST-------  382 (602)
Q Consensus       322 ~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~--------~~~~~~~~~~~~----~~~~~~~~~-------  382 (602)
                      .....|+|.|+|+.+++-...+.|.+++..+++.......        .......++++|    ++.+.++..       
T Consensus        27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~  106 (454)
T 1cru_A           27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKST  106 (454)
T ss_dssp             SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC-
T ss_pred             CCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCC
Confidence            3567999999998666654445788888665554322211        234566889998    566555442       


Q ss_pred             ------CCeEEEEEcCCC-------ceee-Eec-cCCCCeEEEEECCCCCEEEEEECC
Q psy12697        383 ------DQHIHVCKLHSD-------KPVK-SFE-GHTNEVNAIKWDPQGLLLASCSDD  425 (602)
Q Consensus       383 ------~~~i~i~d~~~~-------~~~~-~~~-~~~~~i~~~~~~~~~~~l~~~~~d  425 (602)
                            ...|.-++....       +.+. .+. ........|+|.|||.+.++.++.
T Consensus       107 ~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd~  164 (454)
T 1cru_A          107 DKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGDQ  164 (454)
T ss_dssp             -CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECCT
T ss_pred             ccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECCC
Confidence                  235655655332       1111 122 112347899999999887776654

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=96.73  E-value=0.12  Score=56.58  Aligned_cols=259  Identities=11%  Similarity=0.122  Sum_probs=147.4

Q ss_pred             cceeeeecccceeeeeeeccCCceEEEEECCCCCeEEEeeCCceEEEEecCCceeEEEeeccCceEEEEeCCCCCCCCCC
Q psy12697        120 LTLPLWDVERGECLNTLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKGTGGIFEVCWNSRGTPPNPP  199 (602)
Q Consensus       120 ~~i~vwd~~~~~~~~~l~~h~~~V~~~~~s~d~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (602)
                      .+|.|.|+..+..+.+-.   -.--+.-.+|..+.||--. ..++.|+|+++...+.++..+.                 
T Consensus        48 ~~vvIidl~~~~~~~rrp---i~AdsAIMnP~~~iiALra-g~~lQiFnl~~k~klks~~~~e-----------------  106 (1630)
T 1xi4_A           48 AQVVIIDMNDPSNPIRRP---ISADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD-----------------  106 (1630)
T ss_pred             ceEEEEECCCCCCccccc---ccchhhccCCCcceEEEec-CCeEEEeehHHhhhhcccccCC-----------------
Confidence            478888988765442211   1111234577777776654 7899999999988876655333                 


Q ss_pred             CCccccccccccCCcceEeeCCCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCC
Q psy12697        200 ESMEVDASIEIPQSKATKLIGHESEVFICAWNPVKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPS  279 (602)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (602)
                                              +|.--.|-.+. .|+..+ +..|.-|++......    ...+.++..     .  .
T Consensus       107 ------------------------~VvfWkWis~~-~l~lVT-~~aVyHW~~~~~s~P----~k~fdR~~~-----L--~  149 (1630)
T 1xi4_A          107 ------------------------DVTFWKWISLN-TVALVT-DNAVYHWSMEGESQP----VKMFDRHSS-----L--A  149 (1630)
T ss_pred             ------------------------CceEEEecCCC-eeEEEc-CCeEEEeccCCCCcc----HHHHhcchh-----c--c
Confidence                                    34444554333 233332 356999999652211    111111100     0  1


Q ss_pred             CCceeEEeeCCCCCeEEEEe-------CCCeEEEEcCCCcceeecccccCCeEEEEEcc--C-CCEEEEEec---CCcEE
Q psy12697        280 NKDVTSLDWNNNGSFLATGS-------YDGYARIWTSDGSLKSTLGQHKGPIFALKWNK--R-GNYILSAGV---DKTTI  346 (602)
Q Consensus       280 ~~~i~~~~~~~~~~~l~~~~-------~dg~i~i~~~~~~~~~~~~~~~~~i~~~~~~~--~-~~~l~~~~~---dg~i~  346 (602)
                      +..|..-..+++.++++..+       -.|.+.+|..+.+..+.+.+|.+....+....  . ...+..+..   .+.+.
T Consensus       150 ~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLh  229 (1630)
T 1xi4_A          150 GCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLH  229 (1630)
T ss_pred             cCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccccchhhhHhHhhhheeccCCCCCCceEEEEEEecCCCceEE
Confidence            35677778888888877543       34889999998888888888877665555431  1 223332222   36888


Q ss_pred             EEeCCCC-ceeEEe-------eec----cCCeeeeeccC-CCeEEEeeCCCeEEEEEcCCCceeeEeccCCCCeEEEEEC
Q psy12697        347 IWDAASG-QCEQQF-------SFH----SAPALDVDWQS-NTSFASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWD  413 (602)
Q Consensus       347 ~wd~~~~-~~~~~~-------~~~----~~~~~~~~~~~-~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~  413 (602)
                      +.++... .....+       ...    ..-...+..++ .+.+...+.-|.++++|+.++..+..-+-....|...+.+
T Consensus       230 i~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i~~~ris~~~iF~~~~~  309 (1630)
T 1xi4_A          230 IIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPH  309 (1630)
T ss_pred             EEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecCceEEEEecccchhhhhccccCCceEEeccC
Confidence            8887543 100111       011    11122233333 3667888999999999999998876555444555544444


Q ss_pred             CCCCEEEEEECCCeEEEEeCCCC
Q psy12697        414 PQGLLLASCSDDMTLKIWSLDKD  436 (602)
Q Consensus       414 ~~~~~l~~~~~dg~i~iwd~~~~  436 (602)
                      ....-++.....|.|.--.+...
T Consensus       310 ~~~~g~~~vnr~G~vl~v~v~~~  332 (1630)
T 1xi4_A          310 EATAGIIGVNRKGQVLSVCVEEE  332 (1630)
T ss_pred             CCCCceEEEcCCceEEEEEEccc
Confidence            43333444445665555554443

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=96.66  E-value=0.17  Score=55.49  Aligned_cols=266  Identities=12%  Similarity=0.151  Sum_probs=147.9

Q ss_pred             CCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEeeCCCCCeEEEEeCCCeEEEEcCCCcceeecccccC
Q psy12697        243 DSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFLATGSYDGYARIWTSDGSLKSTLGQHKG  322 (602)
Q Consensus       243 dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~  322 (602)
                      ...|.|-|+.++......+                   -..-+.-.+|..+.+|.-. ...+.++|++.+....-.....
T Consensus        47 ~~~vvIidl~~~~~~~rrp-------------------i~AdsAIMnP~~~iiALra-g~~lQiFnl~~k~klks~~~~e  106 (1630)
T 1xi4_A           47 QAQVVIIDMNDPSNPIRRP-------------------ISADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD  106 (1630)
T ss_pred             CceEEEEECCCCCCccccc-------------------ccchhhccCCCcceEEEec-CCeEEEeehHHhhhhcccccCC
Confidence            3478888887765432111                   1123344677777666654 6789999987543333223345


Q ss_pred             CeEEEEEccCCCEEEEEecCCcEEEEeCCCC-ceeEEeeec----cCCeeeeeccCCCe--EEEee------CCCeEEEE
Q psy12697        323 PIFALKWNKRGNYILSAGVDKTTIIWDAASG-QCEQQFSFH----SAPALDVDWQSNTS--FASCS------TDQHIHVC  389 (602)
Q Consensus       323 ~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~~-~~~~~~~~~----~~~~~~~~~~~~~~--~~~~~------~~~~i~i~  389 (602)
                      +|.--.|-.+. .|+-.+ +..|.-|++... .+.+.+..|    ...|..-..+++..  +++|-      -.|.+.+|
T Consensus       107 ~VvfWkWis~~-~l~lVT-~~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLy  184 (1630)
T 1xi4_A          107 DVTFWKWISLN-TVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLY  184 (1630)
T ss_pred             CceEEEecCCC-eeEEEc-CCeEEEeccCCCCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeee
Confidence            67777776543 344443 457999999642 233333222    23344444444433  22322      35788888


Q ss_pred             EcCCCceeeEeccCCCCeEEEEEC--CC-CCEEEEEEC---CCeEEEEeCCCC-eeeEeeccccccEEEEEECCCCCCCC
Q psy12697        390 KLHSDKPVKSFEGHTNEVNAIKWD--PQ-GLLLASCSD---DMTLKIWSLDKD-NCVHDLQAHNKEIYTIKWSPTGPETS  462 (602)
Q Consensus       390 d~~~~~~~~~~~~~~~~i~~~~~~--~~-~~~l~~~~~---dg~i~iwd~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~  462 (602)
                      ....+. .+.+.||......+.+.  +. ..+++.+..   .+.++|-++... ..-   .........+-|.|+.    
T Consensus       185 S~er~~-sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~---~~f~kk~~~~~~~~~~----  256 (1630)
T 1xi4_A          185 SVDRKV-SQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGN---QPFPKKAVDVFFPPEA----  256 (1630)
T ss_pred             eccccc-chhhhHhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCC---CCCccccccccCCccc----
Confidence            876543 34456665544333332  11 223332222   267888887542 110   1111223333444432    


Q ss_pred             CCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeeecccCCCeeEeeecCCc-eEEEeeC
Q psy12697        463 NPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNT-SFASCST  541 (602)
Q Consensus       463 ~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~-~l~~~~~  541 (602)
                                      ...-..++..|+.-..+.....-|.|.++|++++.++..-+-...+|...+-.... -++....
T Consensus       257 ----------------~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i~~~ris~~~iF~~~~~~~~~g~~~vnr  320 (1630)
T 1xi4_A          257 ----------------QNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNR  320 (1630)
T ss_pred             ----------------ccCcceEEEeccccCEEEEEecCceEEEEecccchhhhhccccCCceEEeccCCCCCceEEEcC
Confidence                            12233467777777778888899999999999999987666556666655554433 4555557


Q ss_pred             CCcEEEeecCCCC
Q psy12697        542 DQHIHVCKLHSDK  554 (602)
Q Consensus       542 d~~i~iw~~~~~~  554 (602)
                      .|.|.--.+....
T Consensus       321 ~G~vl~v~v~~~~  333 (1630)
T 1xi4_A          321 KGQVLSVCVEEEN  333 (1630)
T ss_pred             CceEEEEEEccch
Confidence            7776666655443

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=96.65  E-value=0.26  Score=45.27  Aligned_cols=144  Identities=13%  Similarity=0.080  Sum_probs=71.4

Q ss_pred             CCCCeEEEEeCC----CeEEEEcCCCcceeecccccCC--eEEEEEccCCCEEEEEec----C-----CcEEEEeCCCCc
Q psy12697        290 NNGSFLATGSYD----GYARIWTSDGSLKSTLGQHKGP--IFALKWNKRGNYILSAGV----D-----KTTIIWDAASGQ  354 (602)
Q Consensus       290 ~~~~~l~~~~~d----g~i~i~~~~~~~~~~~~~~~~~--i~~~~~~~~~~~l~~~~~----d-----g~i~~wd~~~~~  354 (602)
                      -++.+++.|+.+    ..+.+||.....-..+.....+  -.+++. -++..++.|+.    +     ..+.+||..+.+
T Consensus        23 ~~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~  101 (308)
T 1zgk_A           23 VGRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCV-VGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQ  101 (308)
T ss_dssp             CCCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE-ETTEEEEECCEEEETTEEEECCCEEEEETTTTE
T ss_pred             CCCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccceEEE-ECCEEEEECCCcCCCCCCeecceEEEECCCCCe
Confidence            355677777642    3688888765444333211111  012222 25566666665    2     468889988775


Q ss_pred             eeEEeeeccCC-eeeeeccCCCeEEEeeCC-----CeEEEEEcCCCceee--EeccCCCCeEEEEECCCCCEEEEEECC-
Q psy12697        355 CEQQFSFHSAP-ALDVDWQSNTSFASCSTD-----QHIHVCKLHSDKPVK--SFEGHTNEVNAIKWDPQGLLLASCSDD-  425 (602)
Q Consensus       355 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-----~~i~i~d~~~~~~~~--~~~~~~~~i~~~~~~~~~~~l~~~~~d-  425 (602)
                      ....-...... -..++...+..++.|+.+     ..+.+||..+.+-..  .+......-..+.+  ++++++.|+.+ 
T Consensus       102 W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~  179 (308)
T 1zgk_A          102 WSPCAPMSVPRNRIGVGVIDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL--NRLLYAVGGFDG  179 (308)
T ss_dssp             EEECCCCSSCCBTCEEEEETTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCS
T ss_pred             EeECCCCCcCccccEEEEECCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE--CCEEEEEeCCCC
Confidence            44322211111 112222344556666533     468888887764221  11111111222223  56677777654 


Q ss_pred             ----CeEEEEeCCCC
Q psy12697        426 ----MTLKIWSLDKD  436 (602)
Q Consensus       426 ----g~i~iwd~~~~  436 (602)
                          ..+.+||+.+.
T Consensus       180 ~~~~~~~~~yd~~~~  194 (308)
T 1zgk_A          180 TNRLNSAECYYPERN  194 (308)
T ss_dssp             SCBCCCEEEEETTTT
T ss_pred             CCcCceEEEEeCCCC
Confidence                34677776654

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=96.63  E-value=0.42  Score=44.06  Aligned_cols=138  Identities=9%  Similarity=0.008  Sum_probs=68.4

Q ss_pred             EEEEeCCCeEEEEcCCCcceee--cccccCCeEEEEEccCCCEEEEEec----C-------CcEEEEeCCCCceeEEeee
Q psy12697        295 LATGSYDGYARIWTSDGSLKST--LGQHKGPIFALKWNKRGNYILSAGV----D-------KTTIIWDAASGQCEQQFSF  361 (602)
Q Consensus       295 l~~~~~dg~i~i~~~~~~~~~~--~~~~~~~i~~~~~~~~~~~l~~~~~----d-------g~i~~wd~~~~~~~~~~~~  361 (602)
                      ++.|+  ..+..||.....-..  +..............++..++.|+.    +       ..+..||..+.+....-..
T Consensus         8 ~~~GG--~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~   85 (315)
T 4asc_A            8 FMISE--EGAVAYDPAANECYCASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPL   85 (315)
T ss_dssp             EEEET--TEEEEEETTTTEEEEEECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCB
T ss_pred             EEEcC--CceEEECCCCCeEecCCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCC
Confidence            44454  568888876544322  1111122233333456777777773    1       1277889887765332111


Q ss_pred             ccCC-eeeeeccCCCeEEEeeCC--------CeEEEEEcCCCceee--EeccCCCCeEEEEECCCCCEEEEEEC-C----
Q psy12697        362 HSAP-ALDVDWQSNTSFASCSTD--------QHIHVCKLHSDKPVK--SFEGHTNEVNAIKWDPQGLLLASCSD-D----  425 (602)
Q Consensus       362 ~~~~-~~~~~~~~~~~~~~~~~~--------~~i~i~d~~~~~~~~--~~~~~~~~i~~~~~~~~~~~l~~~~~-d----  425 (602)
                      .... -..++...+..++.|+.+        ..+.+||..+.+-..  .+......-..+.  .++++++.|+. +    
T Consensus        86 p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~  163 (315)
T 4asc_A           86 PSPRCLFGLGEALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLS--HMDLVYVIGGKGSDRKC  163 (315)
T ss_dssp             SSCEESCEEEEETTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE--ETTEEEEECCBCTTSCB
T ss_pred             CcchhceeEEEECCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEE--ECCEEEEEeCCCCCCcc
Confidence            1111 112223344556666632        458889988764221  1111111112222  35667777765 2    


Q ss_pred             -CeEEEEeCCCC
Q psy12697        426 -MTLKIWSLDKD  436 (602)
Q Consensus       426 -g~i~iwd~~~~  436 (602)
                       ..+.+||..+.
T Consensus       164 ~~~~~~yd~~~~  175 (315)
T 4asc_A          164 LNKMCVYDPKKF  175 (315)
T ss_dssp             CCCEEEEETTTT
T ss_pred             cceEEEEeCCCC
Confidence             35777777654

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=96.62  E-value=0.15  Score=47.04  Aligned_cols=143  Identities=11%  Similarity=0.084  Sum_probs=82.9

Q ss_pred             CeEEEEeCCCeEEEEcCC-Ccceeecccc-cCCeEEEEE--ccCCCEEEEE--ecCCcEEEEeCCCCceeEEeeec----
Q psy12697        293 SFLATGSYDGYARIWTSD-GSLKSTLGQH-KGPIFALKW--NKRGNYILSA--GVDKTTIIWDAASGQCEQQFSFH----  362 (602)
Q Consensus       293 ~~l~~~~~dg~i~i~~~~-~~~~~~~~~~-~~~i~~~~~--~~~~~~l~~~--~~dg~i~~wd~~~~~~~~~~~~~----  362 (602)
                      ..+++++.||.|.-+|.. |+..-.+... ..++....-  .+.+..++.+  +.||.+..++..+|.....+...    
T Consensus        11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~   90 (339)
T 2be1_A           11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVS   90 (339)
T ss_dssp             EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHT
T ss_pred             CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeecccccee
Confidence            368888999999999864 6655555433 122222110  0112244444  58999999999988655444321    


Q ss_pred             cCCeee---e------eccCCCeEEEeeCCCeEEEEEcCCCceeeEeccCCC--C-----eEEEEEC-----CCCCEEEE
Q psy12697        363 SAPALD---V------DWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEGHTN--E-----VNAIKWD-----PQGLLLAS  421 (602)
Q Consensus       363 ~~~~~~---~------~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~--~-----i~~~~~~-----~~~~~l~~  421 (602)
                      ..++..   .      ..+.++.+++++.+|.+...|+.+|+.+.++.....  .     ..|....     ..+..|+.
T Consensus        91 ~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~~v~i  170 (339)
T 2be1_A           91 TSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECENMIVI  170 (339)
T ss_dssp             TCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC--------------------CCEEEE
T ss_pred             ccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccccCCCeEEE
Confidence            111111   0      002577899999999999999999999988864321  0     0111111     12356777


Q ss_pred             EECCCeEEEEeCCCC
Q psy12697        422 CSDDMTLKIWSLDKD  436 (602)
Q Consensus       422 ~~~dg~i~iwd~~~~  436 (602)
                      +..+..+.+.+ +++
T Consensus       171 g~~~y~v~~~~-~sG  184 (339)
T 2be1_A          171 GKTIFELGIHS-YDG  184 (339)
T ss_dssp             EEEEEECEECC-TTS
T ss_pred             ecceEEEEEEC-CCC
Confidence            77777777766 444

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=96.58  E-value=0.2  Score=46.06  Aligned_cols=142  Identities=6%  Similarity=0.015  Sum_probs=73.5

Q ss_pred             CCCeEEEEeCC----CeEEEEcCCCcceeecccc---cCCeEEEEEccCCCEEEEEecC------CcEEEEeCCCCceeE
Q psy12697        291 NGSFLATGSYD----GYARIWTSDGSLKSTLGQH---KGPIFALKWNKRGNYILSAGVD------KTTIIWDAASGQCEQ  357 (602)
Q Consensus       291 ~~~~l~~~~~d----g~i~i~~~~~~~~~~~~~~---~~~i~~~~~~~~~~~l~~~~~d------g~i~~wd~~~~~~~~  357 (602)
                      ++.+++.|+.+    ..+.+||........+...   ......+.  -+++.++.|+.+      ..+.+||..+.+...
T Consensus        55 ~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~  132 (306)
T 3ii7_A           55 DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAACA--AEGKIYTSGGSEVGNSALYLFECYDTRTESWHT  132 (306)
T ss_dssp             TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBSCEEEE--ETTEEEEECCBBTTBSCCCCEEEEETTTTEEEE
T ss_pred             CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccceeEEE--ECCEEEEECCCCCCCcEeeeEEEEeCCCCceEe
Confidence            56677777755    5788888775433332211   11112222  256666777655      468899988876544


Q ss_pred             EeeeccCC-eeeeeccCCCeEEEeeC---------CCeEEEEEcCCCceeeE--eccCCCCeEEEEECCCCCEEEEEECC
Q psy12697        358 QFSFHSAP-ALDVDWQSNTSFASCST---------DQHIHVCKLHSDKPVKS--FEGHTNEVNAIKWDPQGLLLASCSDD  425 (602)
Q Consensus       358 ~~~~~~~~-~~~~~~~~~~~~~~~~~---------~~~i~i~d~~~~~~~~~--~~~~~~~i~~~~~~~~~~~l~~~~~d  425 (602)
                      .-...... -..+....+..++.|+.         -..+.+||..+.+-...  +......-..+.+  ++++++.|+.+
T Consensus       133 ~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~  210 (306)
T 3ii7_A          133 KPSMLTQRCSHGMVEANGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEARKNHGLVFV--KDKIFAVGGQN  210 (306)
T ss_dssp             ECCCSSCCBSCEEEEETTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCEE
T ss_pred             CCCCcCCcceeEEEEECCEEEEECCCCCCCCcccccceEEEeCCCCCeEEECCCccchhhcceEEEE--CCEEEEEeCCC
Confidence            32211111 11222334445566653         34588999887643221  1111111222222  56677776643


Q ss_pred             -----CeEEEEeCCCC
Q psy12697        426 -----MTLKIWSLDKD  436 (602)
Q Consensus       426 -----g~i~iwd~~~~  436 (602)
                           ..+.+||+.+.
T Consensus       211 ~~~~~~~~~~yd~~~~  226 (306)
T 3ii7_A          211 GLGGLDNVEYYDIKLN  226 (306)
T ss_dssp             TTEEBCCEEEEETTTT
T ss_pred             CCCCCceEEEeeCCCC
Confidence                 34777777664

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=96.41  E-value=0.26  Score=41.75  Aligned_cols=148  Identities=8%  Similarity=-0.060  Sum_probs=81.9

Q ss_pred             CCeeeeeccCCCeEEEeeCCCeEEEEEcCCCceeeEeccCCCC--------eEEEEECCCCCEEEEEECCCeEEEEeCCC
Q psy12697        364 APALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEGHTNE--------VNAIKWDPQGLLLASCSDDMTLKIWSLDK  435 (602)
Q Consensus       364 ~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~--------i~~~~~~~~~~~l~~~~~dg~i~iwd~~~  435 (602)
                      ..+..++++|++.+.+. .+|.++-.+..+.....-+. ....        -.++.|+|+|.+.++  .||.|+-++-.+
T Consensus        41 ~~~~~laf~P~G~LYaV-~~G~Ly~~~~~t~~~~~W~~-s~t~IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~pP~  116 (236)
T 1tl2_A           41 SNFKFLFLSPGGELYGV-LNDKIYKGTPPTHDNDNWMG-RAKKIGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKASPPQ  116 (236)
T ss_dssp             TTCSEEEECTTSCEEEE-ETTEEEEESCCCSTTCCHHH-HCEEEECSCGGGCSEEEECTTSCEEEE--ETTEEEEESCCC
T ss_pred             ccceeEEECCCccEEEE-eCCeEEEECCCCCCcccccc-cccEecccccccceEEEECCCCCEEEe--CCCEEEEeCCCc
Confidence            36778999999888777 88888777765532211111 1112        378999999988887  559888777543


Q ss_pred             CeeeEeeccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCcee
Q psy12697        436 DNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCE  515 (602)
Q Consensus       436 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~~~~~~~  515 (602)
                      ...-.-+.. ...|                          -...-..+..+.|.|+|.+.+..  |+.++-+...++...
T Consensus       117 ~~~~~Wl~~-a~~v--------------------------g~~gw~~~~~lff~p~G~Lyav~--dg~lyr~~~P~~~~~  167 (236)
T 1tl2_A          117 SDTDNWIAR-ATEV--------------------------GSGGWSGFKFLFFHPNGYLYAVH--GQQFYKALPPVSNQD  167 (236)
T ss_dssp             STTCCHHHH-SEEE--------------------------ECSSGGGEEEEEECTTSCEEEEE--TTEEEEECCCSSTTC
T ss_pred             CCCCceecc-ccEe--------------------------ccCCCCceEEEEECCCceEEEEe--CCcEEecCCCCCCCc
Confidence            211100000 0000                          00112456788888898877776  777654444322211


Q ss_pred             -----eee-c-ccCCCeeEeeecCCceEEEeeCCCcE
Q psy12697        516 -----QQF-S-FHSAPALDVDWQSNTSFASCSTDQHI  545 (602)
Q Consensus       516 -----~~~-~-~~~~~v~~~~~s~~~~l~~~~~d~~i  545 (602)
                           .+. - ..-..-.-+.|.|++.|.... ++.+
T Consensus       168 ~wl~~~~~~g~~g~~~yr~l~f~~~G~l~~v~-~g~~  203 (236)
T 1tl2_A          168 NWLARATKIGQGGWDTFKFLFFSSVGTLFGVQ-GGKF  203 (236)
T ss_dssp             CHHHHCEEEESSSGGGEEEEEECTTSCEEEEE-TTEE
T ss_pred             ccccccceeccCCcceEEEEEECCCCcEEEEe-CCeE
Confidence                 111 1 112233446689999444444 6633

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=96.35  E-value=0.59  Score=43.08  Aligned_cols=140  Identities=9%  Similarity=0.007  Sum_probs=66.3

Q ss_pred             eEEEEeCCCeEEEEcCCCcceeec--ccccCCeEEEEEccCCCEEEEEec----CC-------cEEEEeCCCCceeEEee
Q psy12697        294 FLATGSYDGYARIWTSDGSLKSTL--GQHKGPIFALKWNKRGNYILSAGV----DK-------TTIIWDAASGQCEQQFS  360 (602)
Q Consensus       294 ~l~~~~~dg~i~i~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~l~~~~~----dg-------~i~~wd~~~~~~~~~~~  360 (602)
                      .++.|+.  .+..||.....-...  ..............++..++.|+.    ++       .+..||..+.+....-.
T Consensus        18 i~~~GG~--~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~   95 (318)
T 2woz_A           18 ILLVNDT--AAVAYDPMENECYLTALAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPP   95 (318)
T ss_dssp             EEEECSS--EEEEEETTTTEEEEEEECTTSCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSC
T ss_pred             hhhcccc--ceEEECCCCCceecccCCccCCccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCC
Confidence            3444443  377888764433221  111112222333456777777773    12       17788888776543221


Q ss_pred             eccC-CeeeeeccCCCeEEEeeCC-------CeEEEEEcCCCceeeEeccCCCCe-EEEEECCCCCEEEEEECC------
Q psy12697        361 FHSA-PALDVDWQSNTSFASCSTD-------QHIHVCKLHSDKPVKSFEGHTNEV-NAIKWDPQGLLLASCSDD------  425 (602)
Q Consensus       361 ~~~~-~~~~~~~~~~~~~~~~~~~-------~~i~i~d~~~~~~~~~~~~~~~~i-~~~~~~~~~~~l~~~~~d------  425 (602)
                      .... .-..++...+..++.|+.+       ..+.+||..+.+-...-....... .+++. .++++++.|+.+      
T Consensus        96 ~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~  174 (318)
T 2woz_A           96 LPSARCLFGLGEVDDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVIS-HNGMIYCLGGKTDDKKCT  174 (318)
T ss_dssp             BSSCBCSCEEEEETTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEE-ETTEEEEECCEESSSCBC
T ss_pred             CCccccccceEEECCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEE-ECCEEEEEcCCCCCCCcc
Confidence            1111 1122233345566677653       357888887764322111111100 11122 356676776542      


Q ss_pred             CeEEEEeCCCC
Q psy12697        426 MTLKIWSLDKD  436 (602)
Q Consensus       426 g~i~iwd~~~~  436 (602)
                      ..+.+||+.+.
T Consensus       175 ~~~~~yd~~~~  185 (318)
T 2woz_A          175 NRVFIYNPKKG  185 (318)
T ss_dssp             CCEEEEETTTT
T ss_pred             ceEEEEcCCCC
Confidence            34777887664

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=96.27  E-value=0.33  Score=44.43  Aligned_cols=92  Identities=13%  Similarity=0.162  Sum_probs=46.3

Q ss_pred             CcEEEEeCCCCceeEEeeeccCC-eeeeeccCCCeEEEeeCC-----CeEEEEEcCCCceeeE--eccCCCCeEEEEECC
Q psy12697        343 KTTIIWDAASGQCEQQFSFHSAP-ALDVDWQSNTSFASCSTD-----QHIHVCKLHSDKPVKS--FEGHTNEVNAIKWDP  414 (602)
Q Consensus       343 g~i~~wd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-----~~i~i~d~~~~~~~~~--~~~~~~~i~~~~~~~  414 (602)
                      ..+..||..+.+....-...... -..++...+..++.|+.+     ..+.+||..+.+-...  +......-..+.+  
T Consensus        30 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--  107 (302)
T 2xn4_A           30 RSVECYDFKEERWHQVAELPSRRCRAGMVYMAGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAVL--  107 (302)
T ss_dssp             CCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--
T ss_pred             CcEEEEcCcCCcEeEcccCCcccccceEEEECCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEEE--
Confidence            35778888776543321111111 112233345556677654     3588899877652221  1111111222222  


Q ss_pred             CCCEEEEEECCC-----eEEEEeCCCC
Q psy12697        415 QGLLLASCSDDM-----TLKIWSLDKD  436 (602)
Q Consensus       415 ~~~~l~~~~~dg-----~i~iwd~~~~  436 (602)
                      ++++++.|+.++     .+.+||+.+.
T Consensus       108 ~~~iyv~GG~~~~~~~~~~~~~d~~~~  134 (302)
T 2xn4_A          108 NGLLYAVGGFDGSTGLSSVEAYNIKSN  134 (302)
T ss_dssp             TTEEEEEEEECSSCEEEEEEEEETTTT
T ss_pred             CCEEEEEcCCCCCccCceEEEEeCCCC
Confidence            567777777553     4667776654

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=96.09  E-value=0.68  Score=42.60  Aligned_cols=143  Identities=8%  Similarity=0.046  Sum_probs=73.5

Q ss_pred             CCCeEEEEeCC--------CeEEEEcCCCcceeecccccCC-e-EEEEEccCCCEEEEEec-C-----CcEEEEeCCCCc
Q psy12697        291 NGSFLATGSYD--------GYARIWTSDGSLKSTLGQHKGP-I-FALKWNKRGNYILSAGV-D-----KTTIIWDAASGQ  354 (602)
Q Consensus       291 ~~~~l~~~~~d--------g~i~i~~~~~~~~~~~~~~~~~-i-~~~~~~~~~~~l~~~~~-d-----g~i~~wd~~~~~  354 (602)
                      +++.++.|+.+        ..+.+||.....-..+.....+ . .+++ .-+++.++.|+. +     ..+.+||..+.+
T Consensus        98 ~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~  176 (315)
T 4asc_A           98 LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVL-SHMDLVYVIGGKGSDRKCLNKMCVYDPKKFE  176 (315)
T ss_dssp             TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEE-EETTEEEEECCBCTTSCBCCCEEEEETTTTE
T ss_pred             CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEE-EECCEEEEEeCCCCCCcccceEEEEeCCCCe
Confidence            56677777642        4588888775433333221111 1 1122 235566667765 2     468899988775


Q ss_pred             eeEEeeeccCC-eeeeeccCCCeEEEeeCCC-----eEEEEEcCCCceeeE--eccCCCCeEEEEECCCCCEEEEEECCC
Q psy12697        355 CEQQFSFHSAP-ALDVDWQSNTSFASCSTDQ-----HIHVCKLHSDKPVKS--FEGHTNEVNAIKWDPQGLLLASCSDDM  426 (602)
Q Consensus       355 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-----~i~i~d~~~~~~~~~--~~~~~~~i~~~~~~~~~~~l~~~~~dg  426 (602)
                      ....-...... -..+....+..++.|+.++     .+.+||+.+.+-...  +.........+.+  ++++++.|+.++
T Consensus       177 W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~l~v~GG~~~  254 (315)
T 4asc_A          177 WKELAPMQTARSLFGATVHDGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQERSSLSLVSL--VGTLYAIGGFAT  254 (315)
T ss_dssp             EEECCCCSSCCBSCEEEEETTEEEEEEEECSSSEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEEEEEEE
T ss_pred             EEECCCCCCchhceEEEEECCEEEEEeccCCCCccceEEEEECCCCeEEECCCCCCcccceeEEEE--CCEEEEECCccc
Confidence            44322211111 1122333455677776544     588899887643221  1111111222333  567777777642


Q ss_pred             --------------eEEEEeCCCC
Q psy12697        427 --------------TLKIWSLDKD  436 (602)
Q Consensus       427 --------------~i~iwd~~~~  436 (602)
                                    .+.+||+.+.
T Consensus       255 ~~~~~~~~~~~~~~~v~~yd~~~~  278 (315)
T 4asc_A          255 LETESGELVPTELNDIWRYNEEEK  278 (315)
T ss_dssp             EECTTSCEEEEEEEEEEEEETTTT
T ss_pred             cCcCCccccccccCcEEEecCCCC
Confidence                          3667777654

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=96.04  E-value=0.3  Score=44.85  Aligned_cols=61  Identities=10%  Similarity=0.103  Sum_probs=34.6

Q ss_pred             CCCEEEEEeCC-----CeEEEEeCCCCceeee--ecccCCCeeEeeecCCc-eEEEeeCC-----CcEEEeecCCC
Q psy12697        491 RGNYILSAGVD-----KTTIIWDAASGQCEQQ--FSFHSAPALDVDWQSNT-SFASCSTD-----QHIHVCKLHSD  553 (602)
Q Consensus       491 ~~~~l~s~~~d-----g~i~iwd~~~~~~~~~--~~~~~~~v~~~~~s~~~-~l~~~~~d-----~~i~iw~~~~~  553 (602)
                      ++++++.|+.+     ..+.+||+.+.+-...  +....... +++.. ++ .++.|+.+     ..+.+||+.+.
T Consensus       168 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~-~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~~~  241 (308)
T 1zgk_A          168 NRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGA-GVCVL-HNCIYAAGGYDGQDQLNSVERYDVETE  241 (308)
T ss_dssp             TTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSC-EEEEE-TTEEEEECCBCSSSBCCCEEEEETTTT
T ss_pred             CCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccc-eEEEE-CCEEEEEeCCCCCCccceEEEEeCCCC
Confidence            56777777654     4588999877653322  11111111 22222 45 66677654     56888888765

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=95.63  E-value=0.91  Score=42.61  Aligned_cols=91  Identities=7%  Similarity=0.004  Sum_probs=44.9

Q ss_pred             CCCeEEEEeCC-CeEEEEcCCC--cceeeccccc----CCeEEEEEccCCCEEEEEec-C---------CcEEEEeCCCC
Q psy12697        291 NGSFLATGSYD-GYARIWTSDG--SLKSTLGQHK----GPIFALKWNKRGNYILSAGV-D---------KTTIIWDAASG  353 (602)
Q Consensus       291 ~~~~l~~~~~d-g~i~i~~~~~--~~~~~~~~~~----~~i~~~~~~~~~~~l~~~~~-d---------g~i~~wd~~~~  353 (602)
                      ++++++.|+.+ ..+.+||...  ..-..+....    ..-..+.  -+++.++.|+. +         ..+.+||..+.
T Consensus        19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~   96 (357)
T 2uvk_A           19 NDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAF--IDGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTN   96 (357)
T ss_dssp             TTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEE--ETTEEEEECCEEECTTSCEEECCCEEEEETTTT
T ss_pred             CCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEE--ECCEEEEEcCCCCCCCccceeeccEEEEeCCCC
Confidence            56666666544 4688888752  2222222111    1112222  25666666665 2         46888998887


Q ss_pred             ceeEEeeec-cCC-eeeeeccCCCeEEEeeCC
Q psy12697        354 QCEQQFSFH-SAP-ALDVDWQSNTSFASCSTD  383 (602)
Q Consensus       354 ~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~  383 (602)
                      +....-... ... -..+....+..++.|+.+
T Consensus        97 ~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~  128 (357)
T 2uvk_A           97 SWVKLMSHAPMGMAGHVTFVHNGKAYVTGGVN  128 (357)
T ss_dssp             EEEECSCCCSSCCSSEEEEEETTEEEEEECCC
T ss_pred             cEEECCCCCCcccccceEEEECCEEEEEeCcC
Confidence            654432222 111 112223445556777654

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=95.19  E-value=1.9  Score=39.62  Aligned_cols=143  Identities=10%  Similarity=0.122  Sum_probs=72.0

Q ss_pred             CCCeEEEEeCC-------CeEEEEcCCCcceeecccccCCeE--EEEEccCCCEEEEEec------CCcEEEEeCCCCce
Q psy12697        291 NGSFLATGSYD-------GYARIWTSDGSLKSTLGQHKGPIF--ALKWNKRGNYILSAGV------DKTTIIWDAASGQC  355 (602)
Q Consensus       291 ~~~~l~~~~~d-------g~i~i~~~~~~~~~~~~~~~~~i~--~~~~~~~~~~l~~~~~------dg~i~~wd~~~~~~  355 (602)
                      ++++++.|+.+       ..+.+||.....-..+.....+..  ++.. .+++.++.|+.      -..+.+||..+.+.
T Consensus       109 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W  187 (318)
T 2woz_A          109 DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVIS-HNGMIYCLGGKTDDKKCTNRVFIYNPKKGDW  187 (318)
T ss_dssp             TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEE-ETTEEEEECCEESSSCBCCCEEEEETTTTEE
T ss_pred             CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEE-ECCEEEEEcCCCCCCCccceEEEEcCCCCEE
Confidence            56677777754       357788876544333322111111  1122 35666666654      24588999988765


Q ss_pred             eEEeeeccCC-eeeeeccCCCeEEEeeCC-----CeEEEEEcCCCceee--EeccCCCCeEEEEECCCCCEEEEEECC--
Q psy12697        356 EQQFSFHSAP-ALDVDWQSNTSFASCSTD-----QHIHVCKLHSDKPVK--SFEGHTNEVNAIKWDPQGLLLASCSDD--  425 (602)
Q Consensus       356 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-----~~i~i~d~~~~~~~~--~~~~~~~~i~~~~~~~~~~~l~~~~~d--  425 (602)
                      ...-...... ...++...+..++.|+.+     ..+.+||+.+.+-..  .+.........+.+  ++++++.|+.+  
T Consensus       188 ~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~  265 (318)
T 2woz_A          188 KDLAPMKTPRSMFGVAIHKGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQERSSISLVSL--AGSLYAIGGFAMI  265 (318)
T ss_dssp             EEECCCSSCCBSCEEEEETTEEEEEEEEETTEEEEEEEEEETTTCCEEECCCCSSCCBSCEEEEE--TTEEEEECCBCCB
T ss_pred             EECCCCCCCcccceEEEECCEEEEEcCcCCCCccceEEEEECCCCeEEECCCCCCcccceEEEEE--CCEEEEECCeecc
Confidence            4332211111 112333445556666543     357788987764222  11111111222222  46677777653  


Q ss_pred             ------------CeEEEEeCCCC
Q psy12697        426 ------------MTLKIWSLDKD  436 (602)
Q Consensus       426 ------------g~i~iwd~~~~  436 (602)
                                  ..+.+||+.+.
T Consensus       266 ~~~~~~~~~~~~~~v~~yd~~~~  288 (318)
T 2woz_A          266 QLESKEFAPTEVNDIWKYEDDKK  288 (318)
T ss_dssp             C----CCBCCBCCCEEEEETTTT
T ss_pred             CCCCceeccceeeeEEEEeCCCC
Confidence                        34667776654

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=94.96  E-value=2.1  Score=38.94  Aligned_cols=209  Identities=9%  Similarity=0.018  Sum_probs=112.0

Q ss_pred             CCCCCeEEEEe--CCCeEEEEcCCCcceeecccccCCeEEEEEccCCCEEEEEecC--------------CcEEEEeCCC
Q psy12697        289 NNNGSFLATGS--YDGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVD--------------KTTIIWDAAS  352 (602)
Q Consensus       289 ~~~~~~l~~~~--~dg~i~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d--------------g~i~~wd~~~  352 (602)
                      ++++..++...  .++.|...+.++.....+....    +--+++++++|+-+...              ..|+..++..
T Consensus        22 ~~~g~~iy~~n~~d~~~ly~~~~dg~~~~~l~~~~----~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg   97 (302)
T 3s25_A           22 CESDGEVFFSNTNDNGRLYAMNIDGSNIHKLSNDT----AMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNG   97 (302)
T ss_dssp             EEETTEEEEEEGGGTTEEEEEETTSCSCEEEEEEE----EEEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTS
T ss_pred             EEeCCEEEEEeCCCCceEEEEcCCCCCCEEccCCc----eeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCC
Confidence            34666666654  3567777777776655554322    34557889998876543              3567777766


Q ss_pred             CceeEEeeeccCCeeeeeccCCCeEEEee----CCCeEEEEEcCCCceeeEeccCCCCeEEEEECCCCCEEEEEEC-CCe
Q psy12697        353 GQCEQQFSFHSAPALDVDWQSNTSFASCS----TDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSD-DMT  427 (602)
Q Consensus       353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~  427 (602)
                      .+......   .....+.. .++.++...    .+..|+..++..... ..+..+..    .+++|+++.|+-.+. ...
T Consensus        98 ~~~~~l~~---~~~~~~s~-~g~~Iy~~~~~~~~~~~Iy~~~~dGs~~-~~lt~~~~----~~~~~~g~~iy~t~~g~~~  168 (302)
T 3s25_A           98 HGSTVLDP---DPCIYASL-IGNYIYYLHYDTQTATSLYRIRIDGEEK-KKIKNHYL----FTCNTSDRYFYYNNPKNGQ  168 (302)
T ss_dssp             CCCEEEEC---SCEEEEEE-ETTEEEEEEESSSSCEEEEEEETTSCCC-EEEESSCC----CCSEEETTEEEEECTTTCC
T ss_pred             CcceEeec---CCccEEEE-eCCEEEEEeecCCCCceEEEEECCCCCe-EEEeCCCc----eEeeEECCEEEEEeCCCce
Confidence            54322211   12222222 233444333    345666667664433 33333322    456778888886665 567


Q ss_pred             EEEEeCCCCeeeEeeccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCC--CeEE
Q psy12697        428 LKIWSLDKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVD--KTTI  505 (602)
Q Consensus       428 i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d--g~i~  505 (602)
                      |...++..+.....+..   .                                  . ...++|++++|+-...+  ..|.
T Consensus       169 Iy~~~l~g~~~~~l~~~---~----------------------------------~-~~~~~P~g~~iy~t~~~~~~~I~  210 (302)
T 3s25_A          169 LYRYDTASQSEALFYDC---N----------------------------------C-YKPVVLDDTNVYYMDVNRDNAIV  210 (302)
T ss_dssp             EEEEETTTTEEEEEECS---C----------------------------------E-EEEEEEETTEEEEEEGGGTTEEE
T ss_pred             EEEEECCCCCEEEEeCC---C----------------------------------c-cceeeecCCEEEEEEcCCCcEEE
Confidence            77777765543222111   0                                  0 11244777888766544  3577


Q ss_pred             EEeCCCCceeeeecccCCCeeEeeecCCc-eEEEee--CCCcEEEeecCCC
Q psy12697        506 IWDAASGQCEQQFSFHSAPALDVDWQSNT-SFASCS--TDQHIHVCKLHSD  553 (602)
Q Consensus       506 iwd~~~~~~~~~~~~~~~~v~~~~~s~~~-~l~~~~--~d~~i~iw~~~~~  553 (602)
                      .-++..+. ...+.  ...+  ..|+|++ +|..+.  ..+.|..-+++..
T Consensus       211 ~~~ldG~~-~~~Lt--~~~~--~~~~~~g~~Iy~~~~~~~~~i~~~~~DG~  256 (302)
T 3s25_A          211 HVNINNPN-PVVLT--EANI--EHYNVYGSLIFYQRGGDNPALCVVKNDGT  256 (302)
T ss_dssp             EECSSSCC-CEECS--CSCE--EEEEEETTEEEEEECSSSCEEEEEETTSC
T ss_pred             EEECCCCC-eEEEe--CCCc--ceEEECCCEEEEEECCCCcEEEEEECCCC
Confidence            77776544 33333  2233  2367777 665442  3456666666543

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=94.45  E-value=2.8  Score=38.09  Aligned_cols=139  Identities=6%  Similarity=0.006  Sum_probs=78.2

Q ss_pred             EeeCCCCCeEEEEeCC--------------CeEEEEcCCCcceeecccccCCeEEEEEccCCCEEEEEe--c--CCcEEE
Q psy12697        286 LDWNNNGSFLATGSYD--------------GYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAG--V--DKTTII  347 (602)
Q Consensus       286 ~~~~~~~~~l~~~~~d--------------g~i~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~--dg~i~~  347 (602)
                      --++++|.+|+.....              ..|+..++++.....+....    ...|++++++|+-..  .  ...|..
T Consensus        58 ~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~l~~~~----~~~~s~~g~~Iy~~~~~~~~~~~Iy~  133 (302)
T 3s25_A           58 MYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTVLDPDP----CIYASLIGNYIYYLHYDTQTATSLYR  133 (302)
T ss_dssp             EEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEEEECSC----EEEEEEETTEEEEEEESSSSCEEEEE
T ss_pred             eeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceEeecCC----ccEEEEeCCEEEEEeecCCCCceEEE
Confidence            3456778887776543              46777788776554443222    236778888888765  2  344555


Q ss_pred             EeCCCCceeEEeeeccCCeeeeeccCCCeEEEeeCCCeEEEEEcCCCceeeEeccCCCCeEEEEECCCCCEEEEEECCC-
Q psy12697        348 WDAASGQCEQQFSFHSAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDM-  426 (602)
Q Consensus       348 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg-  426 (602)
                      .++.... ...+..+..  ..+.|.....+.+......|+..++..+.....+.+   .. ...++|++.+|+-...++ 
T Consensus       134 ~~~dGs~-~~~lt~~~~--~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~~l~~~---~~-~~~~~P~g~~iy~t~~~~~  206 (302)
T 3s25_A          134 IRIDGEE-KKKIKNHYL--FTCNTSDRYFYYNNPKNGQLYRYDTASQSEALFYDC---NC-YKPVVLDDTNVYYMDVNRD  206 (302)
T ss_dssp             EETTSCC-CEEEESSCC--CCSEEETTEEEEECTTTCCEEEEETTTTEEEEEECS---CE-EEEEEEETTEEEEEEGGGT
T ss_pred             EECCCCC-eEEEeCCCc--eEeeEECCEEEEEeCCCceEEEEECCCCCEEEEeCC---Cc-cceeeecCCEEEEEEcCCC
Confidence            5665333 333332222  233443333344444467888888877654433332   22 234568888888766442 


Q ss_pred             -eEEEEeCCC
Q psy12697        427 -TLKIWSLDK  435 (602)
Q Consensus       427 -~i~iwd~~~  435 (602)
                       .|..-+++.
T Consensus       207 ~~I~~~~ldG  216 (302)
T 3s25_A          207 NAIVHVNINN  216 (302)
T ss_dssp             TEEEEECSSS
T ss_pred             cEEEEEECCC
Confidence             455555544

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=94.40  E-value=1.1  Score=41.92  Aligned_cols=92  Identities=9%  Similarity=0.049  Sum_probs=43.3

Q ss_pred             CCCEEEEEec-CCcEEEEeCCC--CceeEEeeec--cCCeeeeeccCCCeEEEeeC-C---------CeEEEEEcCCCce
Q psy12697        332 RGNYILSAGV-DKTTIIWDAAS--GQCEQQFSFH--SAPALDVDWQSNTSFASCST-D---------QHIHVCKLHSDKP  396 (602)
Q Consensus       332 ~~~~l~~~~~-dg~i~~wd~~~--~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-~---------~~i~i~d~~~~~~  396 (602)
                      ++..++.|+. ...+.++|..+  .+....-...  ...-.+++...+..++.|+. +         ..+.+||..+.+-
T Consensus        19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~W   98 (357)
T 2uvk_A           19 NDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFIDGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSW   98 (357)
T ss_dssp             TTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEETTEEEEECCEEECTTSCEEECCCEEEEETTTTEE
T ss_pred             CCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEEECCEEEEEcCCCCCCCccceeeccEEEEeCCCCcE
Confidence            4444444443 34577888764  3222211111  11112233334555666665 2         4688899887642


Q ss_pred             ee--Eec-cCCCCeEEEEECCCCCEEEEEECC
Q psy12697        397 VK--SFE-GHTNEVNAIKWDPQGLLLASCSDD  425 (602)
Q Consensus       397 ~~--~~~-~~~~~i~~~~~~~~~~~l~~~~~d  425 (602)
                      ..  .+. .....-.++.  .++++++.|+.+
T Consensus        99 ~~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~  128 (357)
T 2uvk_A           99 VKLMSHAPMGMAGHVTFV--HNGKAYVTGGVN  128 (357)
T ss_dssp             EECSCCCSSCCSSEEEEE--ETTEEEEEECCC
T ss_pred             EECCCCCCcccccceEEE--ECCEEEEEeCcC
Confidence            22  111 1111122222  467788888764

>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B

Probab=93.65  E-value=3.8  Score=36.75  Aligned_cols=106  Identities=13%  Similarity=-0.000  Sum_probs=58.3

Q ss_pred             CCeEEEEEccCCCEEEEEecCCcEEEEeCCCCceeEEeeeccCCeeeeeccCCCeEEEeeCCCeEEEEEcCCCceeeEec
Q psy12697        322 GPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFE  401 (602)
Q Consensus       322 ~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~  401 (602)
                      ..|..++...  .+.+... ||.+..|-....-.+..-......+..++......++. . ||.++.|-......+-.-.
T Consensus        24 ~~i~~ia~G~--~h~~~l~-~G~v~~wG~n~~Gqlg~p~~~~~~i~~ia~G~~hs~~l-~-~G~v~~wG~n~~Gqlg~P~   98 (282)
T 3qhy_B           24 SGVDAIAGGY--FHGLALK-GGKVLGWGANLNGQLTMPAATQSGVDAIAAGNYHSLAL-K-DGEVIAWGGNEDGQTTVPA   98 (282)
T ss_dssp             SSCCEEEECS--SEEEEEE-TTEEEEEECCSSSTTSCCGGGGSCCCEEEECSSEEEEE-E-TTEEEEEECCTTSTTCCCG
T ss_pred             CCCcEEEeCC--CeEEEEE-CCEEEEEeCCCCCCCCCCccCCCCEEEEEeCCCEEEEE-E-CCEEEEeeCCCCCCCCCCc
Confidence            3566776543  3334345 89999996543221111111223455666555555555 4 8999999876532221111


Q ss_pred             cCCCCeEEEEECCCCCEEEEEECCCeEEEEeCCC
Q psy12697        402 GHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDK  435 (602)
Q Consensus       402 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~  435 (602)
                      .-...|..++...+  ..+.-. ||.|..|-...
T Consensus        99 ~~~~~v~~ia~G~~--hs~al~-~G~v~~wG~n~  129 (282)
T 3qhy_B           99 EARSGVDAIAAGAW--ASYALK-DGKVIAWGDDS  129 (282)
T ss_dssp             GGSSSEEEEEEETT--EEEEEE-TTEEEEEECCT
T ss_pred             ccCCCeEEEECcCC--EEEEEe-CCeEEEecCCC
Confidence            11346777776654  333334 89999997654

>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B

Probab=93.56  E-value=4  Score=36.66  Aligned_cols=223  Identities=11%  Similarity=-0.004  Sum_probs=113.2

Q ss_pred             CceeEEeeCCCCCeEEEEeCCCeEEEEcCC--CcceeecccccCCeEEEEEccCCCEEEEEecCCcEEEEeCCCCceeEE
Q psy12697        281 KDVTSLDWNNNGSFLATGSYDGYARIWTSD--GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQ  358 (602)
Q Consensus       281 ~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~--~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~  358 (602)
                      ..|..++....  ..+.-. ||.+..|-.+  +++-... .....|..++...+  +.+... ||.+..|-....-.+..
T Consensus        24 ~~i~~ia~G~~--h~~~l~-~G~v~~wG~n~~Gqlg~p~-~~~~~i~~ia~G~~--hs~~l~-~G~v~~wG~n~~Gqlg~   96 (282)
T 3qhy_B           24 SGVDAIAGGYF--HGLALK-GGKVLGWGANLNGQLTMPA-ATQSGVDAIAAGNY--HSLALK-DGEVIAWGGNEDGQTTV   96 (282)
T ss_dssp             SSCCEEEECSS--EEEEEE-TTEEEEEECCSSSTTSCCG-GGGSCCCEEEECSS--EEEEEE-TTEEEEEECCTTSTTCC
T ss_pred             CCCcEEEeCCC--eEEEEE-CCEEEEEeCCCCCCCCCCc-cCCCCEEEEEeCCC--EEEEEE-CCEEEEeeCCCCCCCCC
Confidence            35666665543  222335 8999999754  2221111 12345666665433  333334 89999996543211111


Q ss_pred             eeeccCCeeeeeccCCCeEEEeeCCCeEEEEEcCCCceeeEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCee
Q psy12697        359 FSFHSAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNC  438 (602)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~  438 (602)
                      -......+..++......++..  +|.|+.|-......+-........|..++...+.. ++ -. ||.|..|-......
T Consensus        97 P~~~~~~v~~ia~G~~hs~al~--~G~v~~wG~n~~gqlg~~~~~~~~i~~i~~G~~~~-~~-l~-~G~v~~wG~n~~gq  171 (282)
T 3qhy_B           97 PAEARSGVDAIAAGAWASYALK--DGKVIAWGDDSDGQTTVPAEAQSGVTALDGGVYTA-LA-VK-NGGVIAWGDNYFGQ  171 (282)
T ss_dssp             CGGGSSSEEEEEEETTEEEEEE--TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSSEE-EE-EE-TTEEEEEECCTTST
T ss_pred             CcccCCCeEEEECcCCEEEEEe--CCeEEEecCCCCCcCCCCccCCCCeEEEEcccCEE-EE-EE-CCEEEEecCCCCCC
Confidence            1111235566655555445544  99999998765322211112234577776654432 22 33 79999997654221


Q ss_pred             eEeeccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeee
Q psy12697        439 VHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQF  518 (602)
Q Consensus       439 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~  518 (602)
                      +..-..                                  ....|..++...+. .++.  .||.|+.|-....-.+..-
T Consensus       172 lg~p~~----------------------------------~~~~v~~i~~G~~h-s~al--~~G~v~~wG~n~~gqlg~p  214 (282)
T 3qhy_B          172 TTVPAE----------------------------------AQSGVDDVAGGIFH-SLAL--KDGKVIAWGDNRYKQTTVP  214 (282)
T ss_dssp             TSCCGG----------------------------------GGSSEEEEEECSSE-EEEE--ETTEEEEEECCTTSTTCCC
T ss_pred             CCCcee----------------------------------cCCCeEEEEecCCE-EEEE--ECCeEEEEECCCCCCCCCC
Confidence            110000                                  01234444333222 2333  5899999965433222111


Q ss_pred             cccCCCeeEeeecCCceEEEeeCCCcEEEeecCCCC
Q psy12697        519 SFHSAPALDVDWQSNTSFASCSTDQHIHVCKLHSDK  554 (602)
Q Consensus       519 ~~~~~~v~~~~~s~~~~l~~~~~d~~i~iw~~~~~~  554 (602)
                      ......|..++...+..++..  ||.|+.|-.....
T Consensus       215 ~~~~~~v~~i~~G~~h~~al~--~g~v~~wG~n~~g  248 (282)
T 3qhy_B          215 TEALSGVSAIASGEWYSLALK--NGKVIAWGSSRTA  248 (282)
T ss_dssp             GGGGSSCCEEEECSSCEEEEE--TTEEEEESTTCCC
T ss_pred             cccCCCceEEEcCCCEEEEEE--CCEEEEecCCCCc
Confidence            112235777776655544444  9999999866543

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=93.53  E-value=4.8  Score=41.71  Aligned_cols=107  Identities=11%  Similarity=0.129  Sum_probs=60.0

Q ss_pred             CCCCeEEEEeCCC--eEEEEcCCCcceeeccc------ccCCeEEEEEccC-CCEEEEEec--C-----CcEEEEeCCCC
Q psy12697        290 NNGSFLATGSYDG--YARIWTSDGSLKSTLGQ------HKGPIFALKWNKR-GNYILSAGV--D-----KTTIIWDAASG  353 (602)
Q Consensus       290 ~~~~~l~~~~~dg--~i~i~~~~~~~~~~~~~------~~~~i~~~~~~~~-~~~l~~~~~--d-----g~i~~wd~~~~  353 (602)
                      .++++++.|+.++  .+.+||.....-..+..      .......+.+..+ ++.++.|+.  +     ..+.+||+.+.
T Consensus       499 ~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~  578 (695)
T 2zwa_A          499 PDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAE  578 (695)
T ss_dssp             TTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTT
T ss_pred             cCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCC
Confidence            4788888888765  68899877544433321      1112223445544 566667765  2     45889998887


Q ss_pred             c------eeEEeee--ccCCeeeeeccC-CCeEEEeeC--------CCeEEEEEcCCCce
Q psy12697        354 Q------CEQQFSF--HSAPALDVDWQS-NTSFASCST--------DQHIHVCKLHSDKP  396 (602)
Q Consensus       354 ~------~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~--------~~~i~i~d~~~~~~  396 (602)
                      .      .......  ....-..+.... +..++.|+.        ...+.+||+.+.+-
T Consensus       579 ~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~t~~W  638 (695)
T 2zwa_A          579 NATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSIISLDPLSETL  638 (695)
T ss_dssp             CSSCCEEEEEEEECGGGCCBSCEEEEEETTEEEEECCBCSSCCCCTTTSEEEEETTTTEE
T ss_pred             ccccceEEEEcCCCCCCCcccceEEEeCCCEEEEECCccCCCCCCCCCeEEEEECCCCeE
Confidence            7      2211111  111111223334 556667764        34689999887653

>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}

Probab=93.45  E-value=5.6  Score=41.17  Aligned_cols=94  Identities=7%  Similarity=0.031  Sum_probs=56.0

Q ss_pred             cCCcEEEEeCCCCc-------eeEE-ee-eccCCeeeeeccCCCeEEEeeCCCe--EEEEEcCCCc-eeeE-eccC-CCC
Q psy12697        341 VDKTTIIWDAASGQ-------CEQQ-FS-FHSAPALDVDWQSNTSFASCSTDQH--IHVCKLHSDK-PVKS-FEGH-TNE  406 (602)
Q Consensus       341 ~dg~i~~wd~~~~~-------~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~--i~i~d~~~~~-~~~~-~~~~-~~~  406 (602)
                      ..+.|...|+.++.       .... +. .....+..+.|..+..+++...++.  +.++++.+++ .... +... .+.
T Consensus       318 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~l~~~~~~~g~~~~~~~i~lp~~~~  397 (711)
T 4hvt_A          318 KAGSLVALHFTDLLKTESDKTSLKILFTPTANEVFNFISTTKDRVFLATYDNVVAKVVTFTLENEQWTKPVVLKLPYQNA  397 (711)
T ss_dssp             CTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEEEEEEEECSSCEEEEEEETTEEEEEEECEETTEECCCEEECCCSTTC
T ss_pred             CCCeEEEEECCcccccccccccceEEECCCCCCeEEEEEEECCEEEEEEEECCEEEEEEEECCCCceEEEeccCCCCCeE
Confidence            35678888887642       1122 22 2334567788888888888877775  6667766654 2233 2221 245


Q ss_pred             eEEEEECCCCCE-EEEEEC---CCeEEEEeCC
Q psy12697        407 VNAIKWDPQGLL-LASCSD---DMTLKIWSLD  434 (602)
Q Consensus       407 i~~~~~~~~~~~-l~~~~~---dg~i~iwd~~  434 (602)
                      +.....++++.. +++.+.   -+.+..+|+.
T Consensus       398 ~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~  429 (711)
T 4hvt_A          398 IFGMSSYEEEEEALITIENSIVPPTIYLWVKT  429 (711)
T ss_dssp             EEEEECCTTCSCEEEEEECSSSCCEEEEECTT
T ss_pred             EEEEeecCcCCEEEEEEecCCCCCEEEEEeCC
Confidence            666777776654 444443   3678888876

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=93.36  E-value=4.2  Score=42.17  Aligned_cols=106  Identities=6%  Similarity=0.017  Sum_probs=56.6

Q ss_pred             cCCCEEEEEecC----CcEEEEeCCCCceeEEe-e-----ecc-CCeeeeecc--CCCeEEEeeCC------CeEEEEEc
Q psy12697        331 KRGNYILSAGVD----KTTIIWDAASGQCEQQF-S-----FHS-APALDVDWQ--SNTSFASCSTD------QHIHVCKL  391 (602)
Q Consensus       331 ~~~~~l~~~~~d----g~i~~wd~~~~~~~~~~-~-----~~~-~~~~~~~~~--~~~~~~~~~~~------~~i~i~d~  391 (602)
                      .++..++.|+.+    ..+.+||..+++....- .     ... ..-.+++..  .+..++.|+.+      +.+.+||.
T Consensus       396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~  475 (695)
T 2zwa_A          396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDM  475 (695)
T ss_dssp             CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEET
T ss_pred             ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeC
Confidence            345566666643    45778888777654432 1     111 111223333  45556676643      35788888


Q ss_pred             CCCceee--EeccCCCCeEEEEECCCCCEEEEEECCC--eEEEEeCCCCe
Q psy12697        392 HSDKPVK--SFEGHTNEVNAIKWDPQGLLLASCSDDM--TLKIWSLDKDN  437 (602)
Q Consensus       392 ~~~~~~~--~~~~~~~~i~~~~~~~~~~~l~~~~~dg--~i~iwd~~~~~  437 (602)
                      .+.+-..  .+...... .+++.-.++++++.|+.++  .+.+||..+..
T Consensus       476 ~t~~W~~~~~~p~~R~~-h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~  524 (695)
T 2zwa_A          476 KTREWSMIKSLSHTRFR-HSACSLPDGNVLILGGVTEGPAMLLYNVTEEI  524 (695)
T ss_dssp             TTTEEEECCCCSBCCBS-CEEEECTTSCEEEECCBCSSCSEEEEETTTTE
T ss_pred             CCCcEEECCCCCCCccc-ceEEEEcCCEEEEECCCCCCCCEEEEECCCCc
Confidence            8754221  11111111 2233324788888887654  68888887643

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=92.71  E-value=7.8  Score=37.67  Aligned_cols=30  Identities=20%  Similarity=0.094  Sum_probs=22.8

Q ss_pred             CceEEEEECCCCC-eEEEeeCCceEEEEecC
Q psy12697        141 EPVYSVAFSPDGK-FLASGSFDKCVHIWSAR  170 (602)
Q Consensus       141 ~~V~~~~~s~d~~-~l~s~~~d~~v~iwd~~  170 (602)
                      ..-+.|+|.|||+ .|+.+...|.|++++..
T Consensus        14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~   44 (463)
T 2wg3_C           14 RQPVGALHSGDGSQRLFILEKEGYVKILTPE   44 (463)
T ss_dssp             SSEEEEECCSSSSCCEEEEETTTEEEEECTT
T ss_pred             CCceEEEECCCCCeEEEEEeCCceEEEEeCC
Confidence            4567899999996 45556678999998743

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=90.24  E-value=1.7  Score=42.60  Aligned_cols=109  Identities=10%  Similarity=0.115  Sum_probs=65.6

Q ss_pred             eEEEEEccCCCEEEEEe-CCCeEEEEeCCCCce-------------eeeecccCCCeeEeeecCCc-eEEEeeCCCcEEE
Q psy12697        483 IFALKWNKRGNYILSAG-VDKTTIIWDAASGQC-------------EQQFSFHSAPALDVDWQSNT-SFASCSTDQHIHV  547 (602)
Q Consensus       483 v~~i~~s~~~~~l~s~~-~dg~i~iwd~~~~~~-------------~~~~~~~~~~v~~~~~s~~~-~l~~~~~d~~i~i  547 (602)
                      ...+.++|||++++.++ .+.++.++|++.-..             ..... -.-.....+|.++| -..+.--|..|.-
T Consensus       325 PHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e-~GlGPlHt~Fd~~G~aYTtlfidSqvvk  403 (638)
T 3sbq_A          325 PHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE-LGLGPLHTTFDGRGNAYTTLFIDSQVVK  403 (638)
T ss_dssp             CCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB-CCSCEEEEEECSSSEEEEEETTTTEEEE
T ss_pred             CcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeecc-CCCcccEEEECCCCceEeeeeecceEEE
Confidence            34678899999988765 588999999874211             22222 23345678999999 5566678999999


Q ss_pred             eecCCCCceeeeecccccceEEEEecCCcEEEEEE------CCCCCeEEEecc
Q psy12697        548 CKLHSDKPVKSFEGHTTGQLVHSYKGTGGIFEVCW------NSRGDKVGASAS  594 (602)
Q Consensus       548 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~------spdg~~l~~~~~  594 (602)
                      |++...  ++.+.+......+..+.-+-.+-.+.-      .|||++|++...
T Consensus       404 Wni~~a--~~~~~g~~~~~v~~k~dv~YqpGH~~~~~get~~~dGk~lv~lnK  454 (638)
T 3sbq_A          404 WNMEEA--VRAYKGEKVNYIKQKLDVHYQPGHLHASLCETNEADGKWLVALSK  454 (638)
T ss_dssp             EEHHHH--HHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCSCEEEEEES
T ss_pred             EeccHH--HHHhcCccCCeeeeccccccCCcccccCCCccCCCCccEEEEecc
Confidence            998642  111111111122222332333334433      678888887653

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=88.71  E-value=20  Score=35.41  Aligned_cols=71  Identities=11%  Similarity=0.077  Sum_probs=48.1

Q ss_pred             CCeeeeeccCCCeEEEe--eCCCeEEEEEcCCC------ce-------eeEeccCCCCeEEEEECCCCCEEEEEECCCeE
Q psy12697        364 APALDVDWQSNTSFASC--STDQHIHVCKLHSD------KP-------VKSFEGHTNEVNAIKWDPQGLLLASCSDDMTL  428 (602)
Q Consensus       364 ~~~~~~~~~~~~~~~~~--~~~~~i~i~d~~~~------~~-------~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i  428 (602)
                      .....+..+|++.++++  -.+.++.++|+...      +.       ....+ -.-.....+|+++|....+..-|..|
T Consensus       323 ksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e-~GlGPlHt~Fd~~G~aYTtlfidSqv  401 (638)
T 3sbq_A          323 KNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE-LGLGPLHTTFDGRGNAYTTLFIDSQV  401 (638)
T ss_dssp             SSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB-CCSCEEEEEECSSSEEEEEETTTTEE
T ss_pred             CCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeecc-CCCcccEEEECCCCceEeeeeecceE
Confidence            34456677888775544  45778999998742      11       12222 23457789999999666666789999


Q ss_pred             EEEeCCC
Q psy12697        429 KIWSLDK  435 (602)
Q Consensus       429 ~iwd~~~  435 (602)
                      .-|++..
T Consensus       402 vkWni~~  408 (638)
T 3sbq_A          402 VKWNMEE  408 (638)
T ss_dssp             EEEEHHH
T ss_pred             EEEeccH
Confidence            9999864

>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1

Probab=87.49  E-value=17  Score=33.13  Aligned_cols=192  Identities=8%  Similarity=0.065  Sum_probs=104.4

Q ss_pred             cCCCEEEEEecCCcEEEEeCCCCcee-------EEe--eeccCCeeeeeccCCCeEEEeeCCCeEEEEEcCC--------
Q psy12697        331 KRGNYILSAGVDKTTIIWDAASGQCE-------QQF--SFHSAPALDVDWQSNTSFASCSTDQHIHVCKLHS--------  393 (602)
Q Consensus       331 ~~~~~l~~~~~dg~i~~wd~~~~~~~-------~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~--------  393 (602)
                      ++..++++.+.+|.|+-..+...+..       ..+  ...+.-+..+.......++..+..|.++-+....        
T Consensus         6 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lke~D~l~~~~~~~~~~~ll~~T~~G~~~~~~~~~ip~~~r~~   85 (312)
T 1suu_A            6 QKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLNDGDEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSSRAS   85 (312)
T ss_dssp             --CEEEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCCTTCCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCC-----
T ss_pred             CCCCEEEEEeCCCEEEEeEHHHhhccccCCCCceecccCCCCEEEEEEEECCCCEEEEEECCCeEEEEEHHHCCCCCccC
Confidence            45667888999999987765433211       111  1112222233334456788888888887776532        


Q ss_pred             -Cce---eeEeccCCCCeEEEEECC---CCCEEEEEECCCeEEEEeCCCCeeeEeeccccccEEEEEECCCCCCCCCCCc
Q psy12697        394 -DKP---VKSFEGHTNEVNAIKWDP---QGLLLASCSDDMTLKIWSLDKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNM  466 (602)
Q Consensus       394 -~~~---~~~~~~~~~~i~~~~~~~---~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  466 (602)
                       |.+   ...+. ....|..+..-+   +..+|+..+..|.++...+.......     ...+..+.             
T Consensus        86 ~G~~i~~~l~l~-~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r-----~~G~~~i~-------------  146 (312)
T 1suu_A           86 KGQNISELINLG-DQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVK-----SRGVIVIK-------------  146 (312)
T ss_dssp             --CBGGGTSCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC---------CEECBC-------------
T ss_pred             CCcChhhccCCC-CCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccC-----CCcEEEEe-------------
Confidence             111   11122 223444443322   45678888999999888765422111     11111111             


Q ss_pred             ceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCC---------ceeeeecccCCCeeEeeecCCc-eE
Q psy12697        467 SLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASG---------QCEQQFSFHSAPALDVDWQSNT-SF  536 (602)
Q Consensus       467 ~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~~~~---------~~~~~~~~~~~~v~~~~~s~~~-~l  536 (602)
                               +.. ...+..+....++..++..+.+|.+..+....-         .....+. ....|..+...+++ .+
T Consensus       147 ---------L~~-~d~lv~~~~~~~~~~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~-~~d~vv~~~~v~~~~~l  215 (312)
T 1suu_A          147 ---------LND-KDFVTSAEIVFKDEKVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLK-EGDLFVKVLSVKENPYL  215 (312)
T ss_dssp             ---------CCT-TCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTBCCEECCCCC-TTCCEEEEEECTTCSEE
T ss_pred             ---------cCC-CCEEEEEEEeCCCCEEEEEeCCCcEEEEEHHHccccCCCCCCeEeEEeC-CCCEEEEEEEECCCCeE
Confidence                     111 234444444444567888889999888876541         1112222 23456666554444 78


Q ss_pred             EEeeCCCcEEEeecCC
Q psy12697        537 ASCSTDQHIHVCKLHS  552 (602)
Q Consensus       537 ~~~~~d~~i~iw~~~~  552 (602)
                      ++.+..|..+..++..
T Consensus       216 ~~vt~~G~~kr~~~~e  231 (312)
T 1suu_A          216 LIVSENGYGKRLNMSK  231 (312)
T ss_dssp             EEEETTSEEEEEEGGG
T ss_pred             EEEECCCceEEEEHHH
Confidence            8888999988888754

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=87.26  E-value=22  Score=34.42  Aligned_cols=105  Identities=10%  Similarity=0.103  Sum_probs=61.6

Q ss_pred             CCeEEEEEccCCC-EEEEEecCCcEEEEeCCCCc---eeEEee--e-------ccCCeeeeeccCC----CeEEEe-eC-
Q psy12697        322 GPIFALKWNKRGN-YILSAGVDKTTIIWDAASGQ---CEQQFS--F-------HSAPALDVDWQSN----TSFASC-ST-  382 (602)
Q Consensus       322 ~~i~~~~~~~~~~-~l~~~~~dg~i~~wd~~~~~---~~~~~~--~-------~~~~~~~~~~~~~----~~~~~~-~~-  382 (602)
                      ...+.|+|.|++. .|+++...|.|++++.....   .+..+.  .       .......+++.|+    +.+.+. +. 
T Consensus        14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~   93 (463)
T 2wg3_C           14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTN   93 (463)
T ss_dssp             SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEEC
T ss_pred             CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCC
Confidence            4567999999996 56667788999999754221   112111  0       1345678899886    444333 22 


Q ss_pred             -C----------CeEEEEEcCCC----------ceeeEec--cCCCCeEEEEECCCCCEEEEEECCC
Q psy12697        383 -D----------QHIHVCKLHSD----------KPVKSFE--GHTNEVNAIKWDPQGLLLASCSDDM  426 (602)
Q Consensus       383 -~----------~~i~i~d~~~~----------~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~dg  426 (602)
                       +          ..|.-|.+..+          +.+..+.  ........|+|.|||.+.++.++.+
T Consensus        94 ~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd~~  160 (463)
T 2wg3_C           94 QERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGDGM  160 (463)
T ss_dssp             CCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECCTT
T ss_pred             CCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCCCC
Confidence             1          13444655421          1222222  1223468899999998888777654

>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}

Probab=84.87  E-value=26  Score=33.00  Aligned_cols=135  Identities=13%  Similarity=0.027  Sum_probs=65.0

Q ss_pred             CeEEEEeCCCeEEEEcCC--Ccceeec--ccccCCeEEEEEcc-CCCEEEEEecCC----cEEEEeCCCCceeEEeee--
Q psy12697        293 SFLATGSYDGYARIWTSD--GSLKSTL--GQHKGPIFALKWNK-RGNYILSAGVDK----TTIIWDAASGQCEQQFSF--  361 (602)
Q Consensus       293 ~~l~~~~~dg~i~i~~~~--~~~~~~~--~~~~~~i~~~~~~~-~~~~l~~~~~dg----~i~~wd~~~~~~~~~~~~--  361 (602)
                      ..|.+|+..| +.+++..  +......  ......|.+|++.| +...|.+++..|    .|...+ ..++.-..+..  
T Consensus        23 g~l~vgt~~G-l~~~~~~~~g~~W~~~~~~~~~~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s~-D~G~tW~~~~~~~  100 (394)
T 3b7f_A           23 VMLLVATIKG-AWFLASDPARRTWELRGPVFLGHTIHHIVQDPREPERMLMAARTGHLGPTVFRSD-DGGGNWTEATRPP  100 (394)
T ss_dssp             CEEEEEETTE-EEEEEECTTSCSEEEEEEESTTSEEEEEEECSSSTTCEEEEEEC--CCEEEEEES-STTSCCEECSBCC
T ss_pred             CEEEEEecCc-eEEEECCCCCCCceECCccCCCCceEEEEECCCCCCeEEEEecCCCCCccEEEeC-CCCCCceECCccc
Confidence            4677788777 4444432  2222221  12235699999998 333455555454    343332 22322121111  


Q ss_pred             --c----------cCCeeeeeccC---CCeEEEeeCCCeEEEEEcCCCceeeEecc-------------------CCCCe
Q psy12697        362 --H----------SAPALDVDWQS---NTSFASCSTDQHIHVCKLHSDKPVKSFEG-------------------HTNEV  407 (602)
Q Consensus       362 --~----------~~~~~~~~~~~---~~~~~~~~~~~~i~i~d~~~~~~~~~~~~-------------------~~~~i  407 (602)
                        .          ...+..+++.+   .+.+.++...+.|...+-. ++....+..                   ....+
T Consensus       101 ~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~g~~~ggl~~S~Dg-G~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i  179 (394)
T 3b7f_A          101 AFNKAPEGETGRVVDHVFWLTPGHASEPGTWYAGTSPQGLFRSTDH-GASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKM  179 (394)
T ss_dssp             CCCCCC----CCCCCEEEEEEECCTTSTTCEEEEEETTEEEEESST-TSBCEECHHHHTCTTHHHHHCCC----CCCCEE
T ss_pred             cCCCcccccccccccceeEEEeCCCCCCCEEEEEecCCcEEEEcCC-CCCeEECcCccCCccccccccccccCCCCCCce
Confidence              0          11355666664   4566666666665554322 222222211                   12357


Q ss_pred             EEEEECCC-CCEEEEEECCCeEEE
Q psy12697        408 NAIKWDPQ-GLLLASCSDDMTLKI  430 (602)
Q Consensus       408 ~~~~~~~~-~~~l~~~~~dg~i~i  430 (602)
                      .+|.++|. ...|..+..++.|..
T Consensus       180 ~~i~~d~~~~~~l~vg~~~ggl~~  203 (394)
T 3b7f_A          180 HSILVDPRDPKHLYIGMSSGGVFE  203 (394)
T ss_dssp             EEEEECTTCTTCEEEEEETBEEEE
T ss_pred             eEEEECCCCCCEEEEEECCCCEEE
Confidence            89999983 444555554444433

>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B

Probab=83.97  E-value=24  Score=38.00  Aligned_cols=40  Identities=15%  Similarity=0.281  Sum_probs=34.4

Q ss_pred             cCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeeec
Q psy12697        480 KGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFS  519 (602)
Q Consensus       480 ~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~  519 (602)
                      ...+.+++..++..++++-+.|+++++|++.+++++.+..
T Consensus       235 ~~~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~d  274 (950)
T 4gq2_M          235 PNTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE  274 (950)
T ss_dssp             TTCEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred             cceEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeec
Confidence            3457778888899999999999999999999999887653

>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*

Probab=82.51  E-value=32  Score=32.17  Aligned_cols=189  Identities=8%  Similarity=0.102  Sum_probs=102.9

Q ss_pred             ccceeeeecccc--eeeeeeecc------CCceEEEEEC---CC----CCeEEEe-eCCceEEEEecCCceeEEEeeccC
Q psy12697        119 RLTLPLWDVERG--ECLNTLTRH------TEPVYSVAFS---PD----GKFLASG-SFDKCVHIWSARTGQLVHSYKGTG  182 (602)
Q Consensus       119 ~~~i~vwd~~~~--~~~~~l~~h------~~~V~~~~~s---~d----~~~l~s~-~~d~~v~iwd~~~~~~~~~~~~~~  182 (602)
                      .+.|.+||+.+.  +.++++.-.      ...+..+++.   |+    +.+...+ +..+-|.|+|+.+++..+..... 
T Consensus       122 ~pkLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~-  200 (381)
T 3q6k_A          122 RPAIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPT-  200 (381)
T ss_dssp             CCEEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGG-
T ss_pred             CceEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCC-
Confidence            568999999999  998877542      3457888887   32    3344333 35688999999999877654211 


Q ss_pred             ceEEEEeCCCCCCCCCCCCccccccccccCCcceEeeCCCcceEEEEEcCC----CCEEEEeeCCCcEEEEeCCCCCCCC
Q psy12697        183 GIFEVCWNSRGTPPNPPESMEVDASIEIPQSKATKLIGHESEVFICAWNPV----KDFLASGSGDSTARIWDMTDSTKKD  258 (602)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~----~~~l~s~~~dg~i~iw~~~~~~~~~  258 (602)
                            |.|+ .          .....+.... ..   -...|..++.+|+    ++.|.-....+ -++|.+.+.....
T Consensus       201 ------~~pd-~----------~~~~~i~G~~-~~---~~~Gi~gIaLsp~~~~~~~~LYf~plss-~~ly~V~T~~L~~  258 (381)
T 3q6k_A          201 ------FKAE-R----------PTKFDYGGKE-YE---FKAGIFGITLGDRDSEGNRPAYYLAGSA-IKVYSVNTKELKQ  258 (381)
T ss_dssp             ------GSCC-S----------CEEEEETTEE-EE---ECCCEEEEEECCCCTTSCCEEEEEESSC-SEEEEEEHHHHSS
T ss_pred             ------Cccc-c----------CcceEECCEE-eE---eccCceEEEecCCcCCCCeEEEEEECCC-CcEEEEEHHHhhC
Confidence                  1111 0          0000000000 11   1356999999998    67777766544 2455543221111


Q ss_pred             C---ccceEEEEEEecCCCcccCCCCceeEEeeC-CCCCeEEEEeCCCeEEEEcCCC-cc----eeeccc--ccCCeEEE
Q psy12697        259 P---KELQIVLRHCISKGGTEVPSNKDVTSLDWN-NNGSFLATGSYDGYARIWTSDG-SL----KSTLGQ--HKGPIFAL  327 (602)
Q Consensus       259 ~---~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~l~~~~~dg~i~i~~~~~-~~----~~~~~~--~~~~i~~~  327 (602)
                      .   ........         .+....-..+++. .+|.++++--..+.|..|+.++ ..    ...+..  .-.....+
T Consensus       259 ~~~~~~v~~~G~---------kg~~s~~~~~~~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~n~~~l~~d~~l~~pd~~  329 (381)
T 3q6k_A          259 KGGKLNPELLGN---------RGKYNDAIALAYDPKTKVIFFAEANTKQVSCWNTQKMPLRMKNTDVVYTSSRFVFGTDI  329 (381)
T ss_dssp             TTCCCCCEEEEE---------CCTTCCEEEEEECTTTCEEEEEESSSSEEEEEETTSCSBCGGGEEEEEECTTCCSEEEE
T ss_pred             cchhhceEEeee---------cCCCCCcceEEEeCCCCeEEEEeccCCeEEEEeCCCCccccCceEEEEECCCccccCeE
Confidence            0   01111000         0011334556775 6787777777889999999876 22    122211  11235566


Q ss_pred             EEccCCCEEEEE
Q psy12697        328 KWNKRGNYILSA  339 (602)
Q Consensus       328 ~~~~~~~~l~~~  339 (602)
                      .+.++|...+.+
T Consensus       330 ~i~~~g~Lwv~s  341 (381)
T 3q6k_A          330 SVDSKGGLWFMS  341 (381)
T ss_dssp             EECTTSCEEEEE
T ss_pred             EECCCCeEEEEE
Confidence            665555443333

>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B

Probab=81.58  E-value=9.3  Score=41.22  Aligned_cols=38  Identities=21%  Similarity=0.211  Sum_probs=34.2

Q ss_pred             ceEEEEECCCCCeEEEeeCCceEEEEecCCceeEEEee
Q psy12697        142 PVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYK  179 (602)
Q Consensus       142 ~V~~~~~s~d~~~l~s~~~d~~v~iwd~~~~~~~~~~~  179 (602)
                      .|.+++..++..+++|-+.|+++|||++.+++++.+..
T Consensus       237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~d  274 (950)
T 4gq2_M          237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE  274 (950)
T ss_dssp             CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred             eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeec
Confidence            57788888899999999999999999999999988754

>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}

Probab=80.46  E-value=31  Score=30.63  Aligned_cols=187  Identities=12%  Similarity=0.053  Sum_probs=97.9

Q ss_pred             cceeeeecccceeeeeeeccCCceEEEEECC-CCCeEEEeeCCceEEEEecCCceeEEEeeccCceEEEEeCCCCCCCCC
Q psy12697        120 LTLPLWDVERGECLNTLTRHTEPVYSVAFSP-DGKFLASGSFDKCVHIWSARTGQLVHSYKGTGGIFEVCWNSRGTPPNP  198 (602)
Q Consensus       120 ~~i~vwd~~~~~~~~~l~~h~~~V~~~~~s~-d~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (602)
                      +.+++|++..+.....+. ....|..+.... +..+++..+.+|.++-..+..-. .+    ..++..            
T Consensus        48 ~~~~~~~lp~~~~~~ll~-~~e~i~~v~~~~~~~~~~v~~T~~G~iKr~~l~~~~-~~----~~G~~~------------  109 (276)
T 3no0_A           48 YWIAGSQALQGSKVSLKS-REEKIVGAFIREKFGNRLLLATKKGYVKKIPLAEFE-YK----AQGMPI------------  109 (276)
T ss_dssp             EEECSHHHHTSEECCCSS-TTCCEEEEEEGGGSCSEEEEEETTSEEEEEEGGGTT-TC----STTEEC------------
T ss_pred             EEEEhhhCccCcccccCC-CCCEEEEEECCcCCCCEEEEEeCCCEEEEEEHHHhh-hh----cCCeEE------------
Confidence            455556555332211122 344555554321 56789999999999988775432 10    001000            


Q ss_pred             CCCccccccccccCCcceEeeCCCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccC
Q psy12697        199 PESMEVDASIEIPQSKATKLIGHESEVFICAWNPVKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVP  278 (602)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (602)
                                       ..+. ..+.+..+........++..+..|.+..+....-...........        .....
T Consensus       110 -----------------i~lk-egD~l~~~~~~~~~~~ill~T~~G~~~r~~~~eip~~gR~a~Gv~--------~i~L~  163 (276)
T 3no0_A          110 -----------------IKLT-EGDEVVSIASSVDETHILLFTKKGRVARFSVREVPPSTPGARGVQ--------GIKLE  163 (276)
T ss_dssp             -----------------SCCC-TTCCEEEEEECCSSCEEEEEETTSEEEEEEGGGSCBCCTTCCCEE--------CCCCC
T ss_pred             -----------------EecC-CCCEEEEEEEeCCCCEEEEEECCCEEEEEEhhhCCCcCCCCCCEE--------EEccC
Confidence                             1122 233455555555566788888899888776643222111000000        01112


Q ss_pred             CCCceeEEeeCCCCCeEEEEeCCCeEEEEcCC--------CcceeecccccCCeEEEEEccCCCEEEEEecCCcEEE--E
Q psy12697        279 SNKDVTSLDWNNNGSFLATGSYDGYARIWTSD--------GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTII--W  348 (602)
Q Consensus       279 ~~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~--------~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~--w  348 (602)
                      ....|..+...+++..++..+..|.++...+.        +.-...+ ...+.+..+....+...++..+.+|.+..  +
T Consensus       164 ~~d~vv~~~~~~~~~~ll~~T~~G~~kr~~~~e~~~~~R~gkGv~~i-~~~~~lv~~~~~~~~~~i~~~t~~G~~ir~~~  242 (276)
T 3no0_A          164 KNDETSGLRIWNGEPYLLVITAKGRVKKISHEEIPKTNRGVKGTEVS-GTKDTLVDLIPIKEEVELLITTKNGKAFYDKI  242 (276)
T ss_dssp             TTCCEEEEEEESSCSEEEEEETTSCEEEEEGGGSCCCCTTCCCEECC-CSSSCEEEEEEESSEEEEEEEETTSCEEEEEE
T ss_pred             CCCEEEEEEEeCCCCEEEEEeCCCcEEEeEHHHcccCCCCCcceEEE-cCCCcEEEEEEeCCCCEEEEEcCCCeEEEeee
Confidence            23556666555566788888999988887643        1122222 23344555444334456666777777766  6


Q ss_pred             eCC
Q psy12697        349 DAA  351 (602)
Q Consensus       349 d~~  351 (602)
                      +..
T Consensus       243 ~~~  245 (276)
T 3no0_A          243 NQK  245 (276)
T ss_dssp             EGG
T ss_pred             CHH
Confidence            543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	602
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	4e-39
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	4e-33
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	1e-21
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	3e-35
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	6e-27
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	3e-15
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	3e-13
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	3e-29
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	2e-21
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	2e-12
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	1e-28
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	8e-24
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	3e-24
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	2e-20
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	2e-10
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	7e-09
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	2e-06
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	1e-23
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	6e-19
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	6e-14
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	3e-11
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	1e-10
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	5e-10
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	3e-23
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	1e-21
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	4e-09
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	7e-08
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	8e-04
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	1e-22
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	4e-18
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	1e-05
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	4e-21
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	1e-16
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	6e-14
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	5e-19
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	4e-07
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	1e-18
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	3e-14
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	3e-11
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	6e-11
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	1e-18
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	1e-12
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	6e-08
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	1e-07
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	2e-06
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	1e-05
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	1e-16
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	3e-13
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	5e-13
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	9e-07
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	8e-06
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	2e-05
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	3e-16
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	3e-12
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	3e-08
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	8e-07
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	0.003
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	3e-15
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	5e-10
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	6e-10
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	3e-15
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	2e-11
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	4e-15
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	3e-08
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	5e-14
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	1e-12
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	6e-09
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	2e-08
d1mdah_	368	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	7e-11
d1mdah_	368	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	1e-10
d1mdah_	368	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	9e-10
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	7e-10
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	1e-05
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	1e-08
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	6e-07
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	9e-05
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	8e-04
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	1e-07
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	6e-07
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	0.004
d1qnia2	441	b.69.3.1 (A:10-450) Nitrous oxide reductase, N-ter	2e-05
d1ri6a_	333	b.69.11.1 (A:) Putative isomerase YbhE {Escherichi	3e-05
d2bgra1	470	b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26,	0.001
d2hqsa1	269	b.68.4.1 (A:163-431) TolB, C-terminal domain {Esch	0.004

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  144 bits (362), Expect = 4e-39
 Identities = 68/327 (20%), Positives = 122/327 (37%), Gaps = 40/327 (12%)

Query: 129 RGECLNTLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKG-TGGIFEV 187
           R      L+ H  PV  V F P    + S S D  + +W   TG    + KG T  + ++
Sbjct: 6   RPPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDI 65

Query: 188 CWNSRGTPPNPPESMEVDASIEI-PQSKATKLIGHESEVFICAWNPVKDFLASGSGDSTA 246
            ++  G       +       +         + GH+  V   +  P  D + S S D T 
Sbjct: 66  SFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTI 125

Query: 247 RIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFLATGSYDGYARI 306
           ++W++                       T     + V  +  N +G+ +A+ S D   R+
Sbjct: 126 KMWEVQTGYCVK----------------TFTGHREWVRMVRPNQDGTLIASCSNDQTVRV 169

Query: 307 W-TSDGSLKSTLGQHKGPIFALKWN--------------------KRGNYILSAGVDKTT 345
           W  +    K+ L +H+  +  + W                     K G ++LS   DKT 
Sbjct: 170 WVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTI 229

Query: 346 IIWDAASGQCEQQFSFHSAPALDVDWQSNTSF-ASCSTDQHIHVCKLHSDKPVKSFEGHT 404
            +WD ++G C      H      V + S   F  SC+ D+ + V    + + +K+   H 
Sbjct: 230 KMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHE 289

Query: 405 NEVNAIKWDPQGLLLASCSDDMTLKIW 431
           + V ++ +      + + S D T+K+W
Sbjct: 290 HFVTSLDFHKTAPYVVTGSVDQTVKVW 316

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  127 bits (318), Expect = 4e-33
 Identities = 66/338 (19%), Positives = 122/338 (36%), Gaps = 69/338 (20%)

Query: 305 RIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSA 364
           + W      K  L  H+ P+  + ++   + ++SA  D T  +WD  +G  E+    H+ 
Sbjct: 1   KEWIPRPPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTD 60

Query: 365 PALDVDWQ-------------------------------------------SNTSFASCS 381
              D+ +                                            +     S S
Sbjct: 61  SVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSAS 120

Query: 382 TDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHD 441
            D+ I + ++ +   VK+F GH   V  ++ +  G L+ASCS+D T+++W +    C  +
Sbjct: 121 RDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAE 180

Query: 442 LQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVD 501
           L+ H   +  I W+P    +S    +                   K  K G ++LS   D
Sbjct: 181 LREHRHVVECISWAPESSYSSISEAT--------------GSETKKSGKPGPFLLSGSRD 226

Query: 502 KTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTSF-ASCSTDQHIHVCKLHSDKPVKSFE 560
           KT  +WD ++G C      H      V + S   F  SC+ D+ + V    + + +K+  
Sbjct: 227 KTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLN 286

Query: 561 GHTTGQLVHSYKGTGGIFEVCWNSRGDKVGASASDGSV 598
            H              +  + ++     V   + D +V
Sbjct: 287 AH-----------EHFVTSLDFHKTAPYVVTGSVDQTV 313

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 94.0 bits (232), Expect = 1e-21
 Identities = 50/230 (21%), Positives = 90/230 (39%), Gaps = 37/230 (16%)

Query: 121 TLPLWDVERGECLNTLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKG 180
           T+ +W+V+ G C+ T T H E V  V  + DG  +AS S D+ V +W   T +     + 
Sbjct: 124 TIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELRE 183

Query: 181 TGGIFEVCWNSRGTPPNPPESMEVDASIEIPQSKATKLIGHESEVFICAWNPVKDFLASG 240
              + E                     I      +   I   +            FL SG
Sbjct: 184 HRHVVE--------------------CISWAPESSYSSISEATGSETKKSGKPGPFLLSG 223

Query: 241 SGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFLATGSY 300
           S D T ++WD+          L  ++ H           +  V  + +++ G F+ + + 
Sbjct: 224 SRDKTIKMWDV-----STGMCLMTLVGH-----------DNWVRGVLFHSGGKFILSCAD 267

Query: 301 DGYARIW-TSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWD 349
           D   R+W   +     TL  H+  + +L ++K   Y+++  VD+T  +W+
Sbjct: 268 DKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 317

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  133 bits (335), Expect = 3e-35
 Identities = 59/346 (17%), Positives = 110/346 (31%), Gaps = 27/346 (7%)

Query: 94  QNQLNSQR--TNNPSTGPAITNGEEVHRLTLPLWDVERGECLNTLTRHTEPVYSVAFSPD 151
           +NQ+   R    + +      N + V R+ +            TL  H   +Y++ +  D
Sbjct: 15  KNQIRDARKACADATLSQITNNIDPVGRIQM--------RTRRTLRGHLAKIYAMHWGTD 66

Query: 152 GKFLASGSFDKCVHIWSARTGQLVHSYKG-TGGIFEVCWNSRGTPPNPPESMEVDASIEI 210
            + L S S D  + IW + T   VH+    +  +    +   G          + +   +
Sbjct: 67  SRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNL 126

Query: 211 PQSKATKLIGHESEVFICAWNPVKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCI 270
              +    +  E        +  +        D    +    D+T               
Sbjct: 127 KTREGNVRVSRELAGHTGYLSCCRFL------DDNQIVTSSGDTTCALWD------IETG 174

Query: 271 SKGGTEVPSNKDVTSLDWNNNGSFLATGSYDGYARIW-TSDGSLKSTLGQHKGPIFALKW 329
            +  T      DV SL    +     +G+ D  A++W   +G  + T   H+  I A+ +
Sbjct: 175 QQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICF 234

Query: 330 NKRGNYILSAGVDKTTII--WDAASGQCEQQFSFHSAPALDVDWQSNTS-FASCSTDQHI 386
              GN   +   D T  +    A                  V +  +     +   D + 
Sbjct: 235 FPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNC 294

Query: 387 HVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWS 432
           +V             GH N V+ +     G+ +A+ S D  LKIW+
Sbjct: 295 NVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  109 bits (273), Expect = 6e-27
 Identities = 44/281 (15%), Positives = 96/281 (34%), Gaps = 16/281 (5%)

Query: 283 VTSLDWNNNGSFLATGSYDG-YARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGV 341
           + ++ W  +   L + S DG      +   +    +      +    +   GNY+   G+
Sbjct: 58  IYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGL 117

Query: 342 DKTTIIWDAASGQCEQQFSFHSA----PALDVDWQSNTSFASCSTDQHIHVCKLHSDKPV 397
           D    I++  + +   + S   A          +  +    + S D    +  + + +  
Sbjct: 118 DNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQT 177

Query: 398 KSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHDLQAHNKEIYTIKWSPT 457
            +F GHT +V ++   P   L  S + D + K+W + +  C      H  +I  I + P 
Sbjct: 178 TTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPN 237

Query: 458 GPE----------TSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIW 507
           G                  +   ++  +       I ++ ++K G  +L+   D    +W
Sbjct: 238 GNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVW 297

Query: 508 DAASGQCEQQFSFHSAPALDVDWQSNTS-FASCSTDQHIHV 547
           DA         + H      +    +    A+ S D  + +
Sbjct: 298 DALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKI 338

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 75.2 bits (183), Expect = 3e-15
 Identities = 45/287 (15%), Positives = 82/287 (28%), Gaps = 40/287 (13%)

Query: 313 LKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQ 372
            + TL  H   I+A+ W      ++SA  D   IIWD+ +          S+  +   + 
Sbjct: 47  TRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYA 106

Query: 373 SNTSFASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWS 432
            + ++ +C    +I                                  +          S
Sbjct: 107 PSGNYVACGGLDNICSIY------------------------------NLKTREGNVRVS 136

Query: 433 LDKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRG 492
            +       L            + +G  T            +T   H G + +L      
Sbjct: 137 RELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDT 196

Query: 493 NYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTS-FASCSTDQHIHVCKLH 551
              +S   D +  +WD   G C Q F+ H +    + +  N + FA+ S D    +  L 
Sbjct: 197 RLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLR 256

Query: 552 SDKPVKSFEGHTTGQLVHSYKGTGGIFEVCWNSRGDKVGASASDGSV 598
           +                       GI  V ++  G  + A   D + 
Sbjct: 257 A---------DQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNC 294

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 69.0 bits (167), Expect = 3e-13
 Identities = 39/216 (18%), Positives = 78/216 (36%), Gaps = 23/216 (10%)

Query: 395 KPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHDLQAHNKEIYTIKW 454
           +  ++  GH  ++ A+ W     LL S S D  L IW     N VH +   +  + T  +
Sbjct: 46  RTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAY 105

Query: 455 SPTGPETSNPNMSLIFILKSTLGQHKGPIFALK-----------WNKRGNYILSAGVDKT 503
           +P+G   +   +  I  + +   +      + +                N I+++  D T
Sbjct: 106 APSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTT 165

Query: 504 TIIWDAASGQCEQQFSFHSAPALDVDWQSNTSF-ASCSTDQHIHVCKLHSDKPVKSFEGH 562
             +WD  +GQ    F+ H+   + +    +T    S + D    +  +      ++F GH
Sbjct: 166 CALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGH 225

Query: 563 TTGQLVHSYKGTGGIFEVCWNSRGDKVGASASDGSV 598
                         I  +C+   G+     + D + 
Sbjct: 226 -----------ESDINAICFFPNGNAFATGSDDATC 250

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  116 bits (291), Expect = 3e-29
 Identities = 63/347 (18%), Positives = 115/347 (33%), Gaps = 41/347 (11%)

Query: 125 WDVERGECLNTLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKG-TGG 183
           W     +    L  H + V +      G  + SGS D  + +WSA TG+ + +  G TGG
Sbjct: 1   WRRGELKSPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGG 59

Query: 184 IFEVCWNSRGTPPNPPESMEVDASIEIPQSKATKLIGHESEVFICAWNPVKDFLASGSGD 243
           ++              +      + E  +   T    +     +   +  +  + SGS D
Sbjct: 60  VWSSQMRDNIIISGSTDRTLKVWNAETGECIHTL---YGHTSTVRCMHLHEKRVVSGSRD 116

Query: 244 STARIWDMTDSTK----------------------KDPKELQIVLRHCISKGGTEVPSNK 281
           +T R+WD+                               +  + +    ++         
Sbjct: 117 ATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGH 176

Query: 282 DVTSLDWNNNGSFLATGSYDGYARIWTSD-GSLKSTLGQHKGPIFALKWNKRGNYILSAG 340
                    +G  + +GS D   R+W  + G+   TL  H+     ++     N ++S  
Sbjct: 177 TNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELK--DNILVSGN 234

Query: 341 VDKTTIIWDAASGQCEQQFSFHSAPALDVDWQS--NTSFASCSTDQHIHVCKLHSDKPVK 398
            D T  IWD  +GQC Q     +     V           + S D  + +  L + + ++
Sbjct: 235 ADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIR 294

Query: 399 SF-----EGHTNEVNAIKWDPQGLLLASCSDDMT----LKIWSLDKD 436
           +       G    V  I+     L+ A  S + T    L +   D D
Sbjct: 295 NLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDVD 341

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 93.7 bits (231), Expect = 2e-21
 Identities = 60/346 (17%), Positives = 121/346 (34%), Gaps = 35/346 (10%)

Query: 218 LIGHESEVFICAWNPVKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEV 277
           L GH+  V I       + + SGS D+T ++W          K L+ ++ H         
Sbjct: 12  LKGHDDHV-ITCLQFCGNRIVSGSDDNTLKVWSA-----VTGKCLRTLVGH--------- 56

Query: 278 PSNKDVTSLDWNNNGSFLATGSYDGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYIL 337
                V S    +N     +           +    +     +         +     ++
Sbjct: 57  --TGGVWSSQMRDNIIISGSTDRTLKVWNAETG---ECIHTLYGHTSTVRCMHLHEKRVV 111

Query: 338 SAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKPV 397
           S   D T  +WD  +GQC      H A    V +       S + D  + V    ++  +
Sbjct: 112 SGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRR-VVSGAYDFMVKVWDPETETCL 170

Query: 398 KSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHDLQAHNKEIYTIKWSP- 456
            + +GHTN V ++++D  G+ + S S D ++++W ++  NC+H L  H      ++    
Sbjct: 171 HTLQGHTNRVYSLQFD--GIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDN 228

Query: 457 ---TGPETSNP---NMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAA 510
              +G   S     ++     L++  G +K            N+++++  D T  +WD  
Sbjct: 229 ILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLK 288

Query: 511 SGQCEQQFSF-----HSAPALDVDWQSNTSFASCSTDQHIHVCKLH 551
           +G+  +                +   +     +  +       KL 
Sbjct: 289 TGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLL 334

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.8 bits (161), Expect = 2e-12
 Identities = 28/229 (12%), Positives = 60/229 (26%), Gaps = 3/229 (1%)

Query: 348 WDAASGQCEQQFSFHSAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEGHTNEV 407
           W     +  +    H    +           S S D  + V    + K +++  GHT  V
Sbjct: 1   WRRGELKSPKVLKGHDDHVITCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGV 60

Query: 408 NAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMS 467
            + +     ++  S    + +      +                +        + +  + 
Sbjct: 61  WSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLR 120

Query: 468 LIFILKSTLGQ--HKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPA 525
           +  I                      G  ++S   D    +WD  +  C      H+   
Sbjct: 121 VWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRV 180

Query: 526 LDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEGHTTGQLVHSYKGT 574
             + +       S S D  I V  + +   + +  GH +       K  
Sbjct: 181 YSLQFDGIH-VVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDN 228

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  116 bits (289), Expect = 1e-28
 Identities = 67/391 (17%), Positives = 127/391 (32%), Gaps = 47/391 (12%)

Query: 184 IFEVCWNSRGTPPNPPESMEVDASIEIPQSKAT------KLIGHESEVFICAWNPVKDFL 237
            F +  +S+  P    +       +  P           K + H S V    ++   ++L
Sbjct: 18  PFLLDLDSQSVPDALKKQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFSNDGEYL 77

Query: 238 ASGSGDSTARIWDMTDST--KKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFL 295
           A+G  + T +++ ++D +   +   +             +   S+  + S+ ++ +G FL
Sbjct: 78  ATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFL 136

Query: 296 ATGSYDGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQC 355
           ATG+ D   RIW  +      + Q                 L +G    T+         
Sbjct: 137 ATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQ 196

Query: 356 EQQFSFHSAPALDVDWQSNTS--FASCSTDQHIHVCKLHS-------DKPVKSFEGHTNE 406
                        V          A+ S D+ + V    +       D   +S  GH + 
Sbjct: 197 CSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDS 256

Query: 407 VNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNM 466
           V ++ +   G  + S S D ++K+W+L   N   D +  N     + +            
Sbjct: 257 VYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYI----------- 305

Query: 467 SLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPAL 526
                       HK  + ++   +   YILS   D+  + WD  SG        H    +
Sbjct: 306 -----------GHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVI 354

Query: 527 DVDWQSNTSF-------ASCSTDQHIHVCKL 550
            V   + +S        A+ S D    + K 
Sbjct: 355 SVAVANGSSLGPEYNVFATGSGDCKARIWKY 385

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  101 bits (251), Expect = 8e-24
 Identities = 64/342 (18%), Positives = 107/342 (31%), Gaps = 61/342 (17%)

Query: 111 ITNGEEVHRLTLPLWDVERGECLNTLTR--HTEPVYSVAFSPDGKFLASGSFDKCVHIWS 168
           +++G  V RL+      +  E LNT +       + SV FSPDGKFLA+G+ D+ + IW 
Sbjct: 90  VSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWD 149

Query: 169 ARTGQLVHSYKGTGGIFEVCWNSRGTPPNPP--ESMEVDASIEIPQSKATKLIGHESEVF 226
               ++V   +G                         V          +  L   +    
Sbjct: 150 IENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTT 209

Query: 227 ICAWNPVKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSL 286
           +        ++A+GS D   R+WD                    S+  +       V S+
Sbjct: 210 VAVSPGDGKYIAAGSLDRAVRVWDSETGFLV---------ERLDSENESGTGHKDSVYSV 260

Query: 287 DWNNNGSFLATGSYDGYARIWTSDG-------------SLKSTLGQHKGPIFALKWNKRG 333
            +  +G  + +GS D   ++W                 + + T   HK  + ++   +  
Sbjct: 261 VFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQND 320

Query: 334 NYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTSFASCSTDQHIHVCKLHS 393
            YILS   D+  + WD  SG        H    + V                        
Sbjct: 321 EYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAV---------------------- 358

Query: 394 DKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDK 435
                         N     P+  + A+ S D   +IW   K
Sbjct: 359 -------------ANGSSLGPEYNVFATGSGDCKARIWKYKK 387

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  103 bits (255), Expect = 3e-24
 Identities = 53/339 (15%), Positives = 101/339 (29%), Gaps = 51/339 (15%)

Query: 220 GHESEVFICAWNPVKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPS 279
            H++++F  +      F  S SGD   ++WD       +         H + K G     
Sbjct: 12  AHDADIFSVSACN--SFTVSCSGDGYLKVWDN--KLLDNENPKDKSYSHFVHKSGLHHVD 67

Query: 280 NKDVTSLDWNNNGSFLATGSYDGYARIW-TSDGSLKSTLG----------QHKGPIFALK 328
                  D       +AT S+ G    +  +       +             K   +ALK
Sbjct: 68  VLQAIERD-AFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALK 126

Query: 329 WNKRGN-----YILSAGVDKTTIIWDA-ASGQCEQQFSFHSAPALD-------------- 368
           W    +      +++  V  TT IW            + + +P L+              
Sbjct: 127 WGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQF 186

Query: 369 ---VDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDD 425
              VD       A+   +  + + +L + +P+ +FE   + +N         + +     
Sbjct: 187 ATSVDISERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNS-----IRSVKFSP 241

Query: 426 MTLKIWSLDKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFA 485
               +      N    +  +  E      S + P  S+               H   + +
Sbjct: 242 QGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASL-------GEFAHSSWVMS 294

Query: 486 LKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAP 524
           L +N  G  + SAG D     WD  + +     + H   
Sbjct: 295 LSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDD 333

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 91.5 bits (225), Expect = 2e-20
 Identities = 54/411 (13%), Positives = 103/411 (25%), Gaps = 56/411 (13%)

Query: 132 CLNTLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKGT-------GGI 184
             N    H   ++SV+      F  S S D  + +W  +     +    +        G+
Sbjct: 6   TANAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGL 63

Query: 185 FEVCWNSRGTPPNPPESMEVDAS------------------IEIPQSKATKLIGHESEVF 226
             V              +    S                  +   +         +   +
Sbjct: 64  HHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFW 123

Query: 227 ICAWNP-----VKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVP--S 279
              W       +   L +     T  IW       +              +G  E P   
Sbjct: 124 ALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTP 183

Query: 280 NKDVTSLDWNNNGSFLATGSYDGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSA 339
           ++  TS+D +  G  +ATG  +G  +I         TL                N I S 
Sbjct: 184 SQFATSVDISERG-LIATGFNNGTVQISELS-----TLRPLYNFESQHSMINNSNSIRSV 237

Query: 340 GVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKS 399
                  +   A                   +++                  HS +    
Sbjct: 238 KFSPQGSLLAIAHDSNSFGCITL--------YETE-----FGERIGSLSVPTHSSQASLG 284

Query: 400 FEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHDLQAHNKEIYTIKWSPTGP 459
              H++ V ++ ++  G  L S   D  L+ W +     +  L  H  +I   +      
Sbjct: 285 EFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVD 344

Query: 460 ETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAA 510
           E  +   SL       +   K    +         +    +D++   +  A
Sbjct: 345 EHGD---SLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREA 392

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 60.6 bits (145), Expect = 2e-10
 Identities = 33/254 (12%), Positives = 76/254 (29%), Gaps = 35/254 (13%)

Query: 320 HKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTSFAS 379
           H   IF++      ++ +S   D    +WD      E                       
Sbjct: 13  HDADIFSVSAC--NSFTVSCSGDGYLKVWDNKLLDNENPKDK------------------ 52

Query: 380 CSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCV 439
            S    +H   LH    +++ E         +   +  L+A+ S    L  + + +++  
Sbjct: 53  -SYSHFVHKSGLHHVDVLQAIE---------RDAFELCLVATTSFSGDLLFYRITREDET 102

Query: 440 HDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTL--GQHKGPIFALKWNKRGNYILS 497
             +     ++                 S   +L   L     KG  +  K++   +   S
Sbjct: 103 KKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNS 162

Query: 498 AGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVK 557
             ++ +  +         +     S  A  VD       A+   +  + + +L + +P+ 
Sbjct: 163 LTLNWSPTLE---LQGTVESPMTPSQFATSVDISERGLIATGFNNGTVQISELSTLRPLY 219

Query: 558 SFEGHTTGQLVHSY 571
           +FE   +     + 
Sbjct: 220 NFESQHSMINNSNS 233

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 55.6 bits (132), Expect = 7e-09
 Identities = 39/271 (14%), Positives = 79/271 (29%), Gaps = 54/271 (19%)

Query: 125 WDVERGECLNTLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKGTGGI 184
             +E    + +    ++   SV  S  G  +A+G  +  V I    T + +++++    +
Sbjct: 169 PTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSM 227

Query: 185 FEVCWNSRGTPPNPPESMEVDASIEIPQSKATKLIGHESEVFICAWNPVKDFLASGSGDS 244
                +                                  +    ++P    LA     +
Sbjct: 228 INNSNS----------------------------------IRSVKFSPQGSLLAIAHDSN 253

Query: 245 TARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFLATGSYDGYA 304
           +     + ++   +      V  H       E   +  V SL +N++G  L +  +DG  
Sbjct: 254 SFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKL 313

Query: 305 RIW-TSDGSLKSTLGQHKGPI----FALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQF 359
           R W        +TL  H   I      L  ++ G+ +   GV     +     G      
Sbjct: 314 RFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFD---VKFLKKGWRSGMG 370

Query: 360 SFHSAPALDVDWQSNTSFASCSTDQHIHVCK 390
           +             N S      D+ I   +
Sbjct: 371 A-----------DLNESLCCVCLDRSIRWFR 390

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 47.9 bits (112), Expect = 2e-06
 Identities = 14/77 (18%), Positives = 21/77 (27%), Gaps = 7/77 (9%)

Query: 121 TLPLWDVERGECLNTLTRHTEPVY----SVAFSPDGKFLASGSFDKCVHIWSARTGQLVH 176
            L  WDV+  E + TL  H + +      +A    G  LA         +   + G    
Sbjct: 312 KLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPG---VFDVKFLKKGWRSG 368

Query: 177 SYKGTGGIFEVCWNSRG 193
                          R 
Sbjct: 369 MGADLNESLCCVCLDRS 385

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 99.5 bits (246), Expect = 1e-23
 Identities = 58/312 (18%), Positives = 102/312 (32%), Gaps = 35/312 (11%)

Query: 132 CLNTLTRHTEPVYSV-AFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKG-TGGIFEVCW 189
            L  +   +E    V     D + + SG  D  + IW   T +      G TG +  + +
Sbjct: 4   SLQRIHCRSETSKGVYCLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY 63

Query: 190 NSRGTPPNPPESMEVDASIEIPQSKATKLIGHESEVFICAWNPVKDFLASGSGDSTARIW 249
           + R       +S      +   +   T +   E+ + +   N +       S D +  +W
Sbjct: 64  DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVT---CSKDRSIAVW 120

Query: 250 DMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFLATGSYDGYARIW-T 308
           DM                         V           + +  ++ + S D   ++W T
Sbjct: 121 DM---------------ASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNT 165

Query: 309 SDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALD 368
           S      TL  HK  I  L++      ++S   D T  +WD   G C +    H      
Sbjct: 166 STCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELV-R 222

Query: 369 VDWQSNTSFASCSTDQHIHVCKLHS---------DKPVKSFEGHTNEVNAIKWDPQGLLL 419
                N    S + D  I V  L +            +++   H+  V  +++D     +
Sbjct: 223 CIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEF--QI 280

Query: 420 ASCSDDMTLKIW 431
            S S D T+ IW
Sbjct: 281 VSSSHDDTILIW 292

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 85.3 bits (209), Expect = 6e-19
 Identities = 45/295 (15%), Positives = 92/295 (31%), Gaps = 19/295 (6%)

Query: 267 RHCISKGGTEVPSNKDVTSLDWNNNGSFLATGSYDGYARIW-TSDGSLKSTLGQHKGPIF 325
           RH + +      ++K V  L +  +   + +G  D   +IW  +    K  L  H G + 
Sbjct: 2   RHSLQRIHCRSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVL 59

Query: 326 ALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTSFASCSTDQH 385
            L++++R     S+         +             +   L  +     + +   +   
Sbjct: 60  CLQYDERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAV 119

Query: 386 IHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHDLQAH 445
             +         +   GH   VN + +D +   + S S D T+K+W+      V  L  H
Sbjct: 120 WDMASPTDITLRRVLVGHRAAVNVVDFDDKY--IVSASGDRTIKVWNTSTCEFVRTLNGH 177

Query: 446 NKEIYTIKWSPTGPETSNPNMSL----IFILKSTLGQHKGPIFALKWNKRGNYILSAGVD 501
            + I  +++      + + + ++    I                         I+S   D
Sbjct: 178 KRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGAYD 237

Query: 502 KTTIIWDAASG---------QCEQQFSFHSAPALDVDWQSNTSFASCSTDQHIHV 547
               +WD  +           C +    HS     + +       S S D  I +
Sbjct: 238 GKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF-DEFQIVSSSHDDTILI 291

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.6 bits (171), Expect = 6e-14
 Identities = 38/289 (13%), Positives = 93/289 (32%), Gaps = 13/289 (4%)

Query: 315 STLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSN 374
               +    ++ L+++     I+S   D T  IWD  + +C++  + H+   L + +   
Sbjct: 9   HCRSETSKGVYCLQYD--DQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDER 66

Query: 375 TSFASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLD 434
                 S            +            ++    +   +  +         + S  
Sbjct: 67  VIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPT 126

Query: 435 KDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKST---LGQHKGPIFALKWNK- 490
                  L  H   +  + +      +++ + ++     ST   +    G    +   + 
Sbjct: 127 DITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQY 186

Query: 491 RGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTSFASCSTDQHIHVCKL 550
           R   ++S   D T  +WD   G C +    H           N    S + D  I V  L
Sbjct: 187 RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELV-RCIRFDNKRIVSGAYDGKIKVWDL 245

Query: 551 HSDKPVKSFEGHTTGQLVHSYKG-TGGIFEVCWNSRGDKVGASASDGSV 598
            +    ++  G      + +    +G +F + ++    ++ +S+ D ++
Sbjct: 246 VAALDPRAPAGT---LCLRTLVEHSGRVFRLQFD--EFQIVSSSHDDTI 289

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.2 bits (149), Expect = 3e-11
 Identities = 25/139 (17%), Positives = 44/139 (31%), Gaps = 13/139 (9%)

Query: 121 TLPLWDVERGECLNTLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKG 180
           T+ +W+    E + TL  H   +         + + SGS D  + +W    G  +   +G
Sbjct: 159 TIKVWNTSTCEFVRTLNGHKRGIAC--LQYRDRLVVSGSSDNTIRLWDIECGACLRVLEG 216

Query: 181 TGGIFEVCWNSRGTPPNPPESMEV---------DASIEIPQSKATKLIGHESEVFICAWN 231
              +            +     ++         D            L+ H   VF   ++
Sbjct: 217 HEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFD 276

Query: 232 PVKDFLASGSGDSTARIWD 250
                + S S D T  IWD
Sbjct: 277 E--FQIVSSSHDDTILIWD 293

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.6 bits (145), Expect = 1e-10
 Identities = 47/262 (17%), Positives = 86/262 (32%), Gaps = 37/262 (14%)

Query: 121 TLPLWDVERGECLNTLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKG 180
           T+ +WD    EC   LT HT  V  + +        S      V   +         +  
Sbjct: 36  TIKIWDKNTLECKRILTGHTGSVLCLQYDERVIITGSSDSTVRVWDVNTGEMLNTLIHHC 95

Query: 181 TGGIFEVCWNSRGTPPNPPESMEV-DASIEIPQSKATKLIGHESEVFICAWNPVKDFLAS 239
              +     N      +   S+ V D +     +    L+GH + V +  ++    ++ S
Sbjct: 96  EAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD--KYIVS 153

Query: 240 GSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPS-------------------- 279
            SGD T ++W+ +                C+      V S                    
Sbjct: 154 ASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRV 213

Query: 280 --NKDVTSLDWNNNGSFLATGSYDGYARIW----------TSDGSLKSTLGQHKGPIFAL 327
               +        +   + +G+YDG  ++W           +      TL +H G +F L
Sbjct: 214 LEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRL 273

Query: 328 KWNKRGNYILSAGVDKTTIIWD 349
           +++     I+S+  D T +IWD
Sbjct: 274 QFD--EFQIVSSSHDDTILIWD 293

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.7 bits (140), Expect = 5e-10
 Identities = 35/189 (18%), Positives = 68/189 (35%), Gaps = 8/189 (4%)

Query: 392 HSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHDLQAHNKEIYT 451
           HS + +      +  V  +++D Q   + S   D T+KIW  +   C   L  H   +  
Sbjct: 3   HSLQRIHCRSETSKGVYCLQYDDQ--KIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLC 60

Query: 452 IKWSP----TGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIW 507
           +++      TG   S   +  +   +            L        +++   D++  +W
Sbjct: 61  LQYDERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVW 120

Query: 508 DAASGQC--EQQFSFHSAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEGHTTG 565
           D AS      ++       A++V    +    S S D+ I V    + + V++  GH  G
Sbjct: 121 DMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRG 180

Query: 566 QLVHSYKGT 574
                Y+  
Sbjct: 181 IACLQYRDR 189

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score =   99 bits (247), Expect = 3e-23
 Identities = 44/330 (13%), Positives = 91/330 (27%), Gaps = 16/330 (4%)

Query: 121 TLPLWDVERG--ECLNTLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSY 178
            + +++        ++ L  H   V  V ++PD   + +   D+  ++W+ +      + 
Sbjct: 30  EVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTL 89

Query: 179 KGTGGIFEVCWNSRGTPPNPPESMEVDASIEI--------PQSKATKLIGHESEVFICAW 230
                                        I I                    S V    W
Sbjct: 90  VILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDW 149

Query: 231 NPVKDFLASGSGDSTARIWDM--TDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDW 288
           +P    LA+GS D   RI+     +  ++                     S   V  + +
Sbjct: 150 HPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCF 209

Query: 289 NNNGSFLATGSYDGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIW 348
           + NGS +A  S+D    +  +D  +       +            + +++AG D   +++
Sbjct: 210 SANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAGHDCFPVLF 269

Query: 349 DAASGQCEQQFSFHSAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEGHTNEVN 408
              S   +  F            +  T+             +  +         H N V+
Sbjct: 270 TYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVS 329

Query: 409 AIKWDPQG----LLLASCSDDMTLKIWSLD 434
            I     G        +   D  + IW + 
Sbjct: 330 QISVLSGGKAKCSQFCTTGMDGGMSIWDVR 359

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 94.9 bits (234), Expect = 1e-21
 Identities = 50/396 (12%), Positives = 98/396 (24%), Gaps = 60/396 (15%)

Query: 139 HTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKGTGGIFEVCWNSRGTPPNP 198
             EP+   A++ D   +A    +  VHI+     + V  +                    
Sbjct: 6   LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVH-------------------- 45

Query: 199 PESMEVDASIEIPQSKATKLIGHESEVFICAWNPVKDFLASGSGDSTARIWDMTDSTKK- 257
                             +L  H  +V    W P  + + +   D  A +W +   T K 
Sbjct: 46  ------------------ELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKP 87

Query: 258 --------DPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFLATGSYDGYARIWTS 309
                             +              +   +  N+            + + + 
Sbjct: 88  TLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSL 147

Query: 310 DGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDV 369
           D    S L       F  +        +      T        G+   + S        V
Sbjct: 148 DWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGV 207

Query: 370 DWQSNTSF-ASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTL 428
            + +N S  A  S D  + +        V +    T  + A+ +  +  L+A+  D    
Sbjct: 208 CFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAGHDCFP- 266

Query: 429 KIWSLDKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQ-------HKG 481
            +++ D                              N+      + +          HK 
Sbjct: 267 VLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKN 326

Query: 482 PIFALKWNKRGNY----ILSAGVDKTTIIWDAASGQ 513
            +  +     G        + G+D    IWD  S +
Sbjct: 327 SVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLE 362

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 56.4 bits (134), Expect = 4e-09
 Identities = 15/181 (8%), Positives = 40/181 (22%), Gaps = 32/181 (17%)

Query: 403 HTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHDLQAHNKEIYTIKWSPTGPETS 462
               ++   W+     +A C ++  + I+    +  V                       
Sbjct: 6   LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWV----------------------- 42

Query: 463 NPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHS 522
                        L +H G +  + W    N I++ G D+   +W       +       
Sbjct: 43  ---------QVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILR 93

Query: 523 APALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEGHTTGQLVHSYKGTGGIFEVCW 582
                   +   +    +      V  +   +    +      +           +    
Sbjct: 94  INRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNS 153

Query: 583 N 583
            
Sbjct: 154 V 154

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 52.6 bits (124), Expect = 7e-08
 Identities = 30/150 (20%), Positives = 59/150 (39%), Gaps = 7/150 (4%)

Query: 121 TLPLWDVERGECLNTLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKG 180
           T+ L D ++   + TL   T P+ +V F  +   +A+G  D    +++  +     S+ G
Sbjct: 224 TVCLADADKKMAVATLASETLPLLAVTFITESSLVAAGH-DCFPVLFTYDSAAGKLSFGG 282

Query: 181 TGGIFEVCWNSRGTPPNPPESMEVDASIEIPQSKATKLI-GHESEVFICAWNP----VKD 235
              + +       T     ++++  AS E   +    L   H++ V   +          
Sbjct: 283 RLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCS 342

Query: 236 FLASGSGDSTARIWDMTDSTKKDPKELQIV 265
              +   D    IWD+  S +   K+L+IV
Sbjct: 343 QFCTTGMDGGMSIWDV-RSLESALKDLKIV 371

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 39.8 bits (91), Expect = 8e-04
 Identities = 13/82 (15%), Positives = 29/82 (35%), Gaps = 6/82 (7%)

Query: 96  QLNSQRTNNPSTGPAITNGEEVHRLTLPLWDVERGECLNTLTRHTEPVYSVAFSPDGKF- 154
           +L+  + ++     A    + + +          G  L++L  H   V  ++    GK  
Sbjct: 283 RLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSL--HKNSVSQISVLSGGKAK 340

Query: 155 ---LASGSFDKCVHIWSARTGQ 173
                +   D  + IW  R+ +
Sbjct: 341 CSQFCTTGMDGGMSIWDVRSLE 362

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 97.2 bits (240), Expect = 1e-22
 Identities = 41/320 (12%), Positives = 84/320 (26%), Gaps = 24/320 (7%)

Query: 121 TLPLWDVERGECLNTLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQ------L 174
            +          +NTL  H E V +V  S   + + +G    CV +W             
Sbjct: 33  LIGPGIPRHARQINTL-NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQ 90

Query: 175 VHSYKGTGGIFEVCWNSRGTPPNPPESMEVDASIEIPQSKATKLIGHESEVFICAWNPVK 234
           +        I        G                I   +A+ L   +            
Sbjct: 91  LDCLNRDNYIRSCKLLPDGC-------------TLIVGGEASTLSIWDLAAPTPRIKAEL 137

Query: 235 DFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSF 294
              A                +      + +   H  +            + +D +N+G+ 
Sbjct: 138 TSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTK 197

Query: 295 LATGSYDGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQ 354
           L TG  D   R W      +         IF+L +   G ++          +    +  
Sbjct: 198 LWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHV-NKP 256

Query: 355 CEQQFSFHSAPALDVDWQSNTS-FASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWD 413
            + Q   H +  L + +      F S   D  ++  +      +      ++ V +    
Sbjct: 257 DKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS-KESSSVLSCDIS 315

Query: 414 PQGLLLASCSDDMTLKIWSL 433
                + + S D    ++ +
Sbjct: 316 VDDKYIVTGSGDKKATVYEV 335

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 83.7 bits (205), Expect = 4e-18
 Identities = 62/288 (21%), Positives = 109/288 (37%), Gaps = 20/288 (6%)

Query: 280 NKDVTSLDWNNNGSFLATGSYDGYARIW-TSDGSLKSTLGQ-----HKGPIFALKWNKRG 333
            + V ++  +N    + TG   G  ++W  S    KS + Q         I + K    G
Sbjct: 51  GEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDG 109

Query: 334 NYILSAGVDKTTIIWDAASGQCEQQFSFHS---APALDVDWQSNTSFASCSTDQHIHVCK 390
             ++  G   T  IWD A+     +    S   A         +    SC +D +I V  
Sbjct: 110 CTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWD 169

Query: 391 LHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHDLQAHNKEIY 450
           LH+   V+ F+GHT+  + I     G  L +   D T++ W L +   +        +I+
Sbjct: 170 LHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQ-HDFTSQIF 228

Query: 451 TIKWSPTGP-------ETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKT 503
           ++ + PTG         ++   + +    K  L  H+  + +LK+   G + +S G D  
Sbjct: 229 SLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNL 288

Query: 504 TIIWDAASGQCEQQFSFHSAPALDVDWQSN-TSFASCSTDQHIHVCKL 550
              W    G    Q    S+  L  D   +     + S D+   V ++
Sbjct: 289 LNAWRTPYGASIFQSK-ESSSVLSCDISVDDKYIVTGSGDKKATVYEV 335

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.6 bits (106), Expect = 1e-05
 Identities = 28/322 (8%), Positives = 66/322 (20%), Gaps = 40/322 (12%)

Query: 278 PSNKDVTSLDWNNNGSFLATG-SYDGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYI 336
             +K   S     +G         D          + +     H   + A+  +    ++
Sbjct: 7   MGSKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTRHV 66

Query: 337 LSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKP 396
            + G      +WD +    +   S                                    
Sbjct: 67  YTGG-KGCVKVWDISHPGNKSPVSQLD--------------------------------- 92

Query: 397 VKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHDLQAHNKEIYTIKWSP 456
                   N + + K  P G  L    +  TL IW L         +  +        + 
Sbjct: 93  ---CLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAI 149

Query: 457 TGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQ 516
           +       +      +      ++  +   + +  G   +    D T +           
Sbjct: 150 SPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRS 209

Query: 517 QFSFHSAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEGHTTGQLVHSYKGTGG 576
                       D+ S                 + S                  +     
Sbjct: 210 WDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKY--QLHLHESC 267

Query: 577 IFEVCWNSRGDKVGASASDGSV 598
           +  + +   G    ++  D  +
Sbjct: 268 VLSLKFAYCGKWFVSTGKDNLL 289

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 93.0 bits (229), Expect = 4e-21
 Identities = 44/334 (13%), Positives = 114/334 (34%), Gaps = 14/334 (4%)

Query: 135 TLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKG-TGGIFEVCWNSRG 193
           TL  H   V +     +  ++ +G+ DK + ++ +   + +    G  GG++ + +   G
Sbjct: 7   TLRGHMTSVIT-CLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG 65

Query: 194 T--PPNPPESMEVDASIEIPQSKATKLIGHESEVFICAWNPVKDFLASGSGDSTARIWDM 251
                +   ++ V    +   +   +                  ++ +GS D+T  +W +
Sbjct: 66  ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKL 125

Query: 252 TD-----STKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFLATGSYDGYARI 306
                     ++     +      +     V      +    + +G+ + +GSYD    +
Sbjct: 126 PKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIV 185

Query: 307 -WTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAP 365
              +       L  H   I++  ++      +SA +D T  IWD  +G+       H+A 
Sbjct: 186 WDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTAL 245

Query: 366 ALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDD 425
              +        ++ +             +       + + +    +     +L S S++
Sbjct: 246 VGLLRLSDKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITT--FYVSDNILVSGSEN 303

Query: 426 MTLKIWSLDKDNCVH-DLQAHNKEIYTIKWSPTG 458
               I++L     VH ++     +I+++ +    
Sbjct: 304 -QFNIYNLRSGKLVHANILKDADQIWSVNFKGKT 336

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 79.6 bits (194), Expect = 1e-16
 Identities = 41/322 (12%), Positives = 104/322 (32%), Gaps = 10/322 (3%)

Query: 121 TLPLWDVERGECLNTLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKG 180
            + ++D    + L  L+ H   V+++ ++  G  L SGS D+ V +W  + G   H ++G
Sbjct: 34  MIRVYDSINKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCTHVFEG 92

Query: 181 TGGIFEVCWNSRGTPPNPPESMEVDASI---EIPQSKATKLIGHESEVFICAWNPVKDFL 237
                               +   D ++   ++P+  +    G E +  +    P ++  
Sbjct: 93  HNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPY 152

Query: 238 ASGS----GDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGS 293
             G       S   +    +       +  +++          + S           +  
Sbjct: 153 FVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHE 212

Query: 294 FLATGSYDGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASG 353
                S      I   D      +   +G    +   +  +  L +     +I    A+ 
Sbjct: 213 RKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDAND 272

Query: 354 QCEQQFSFHSAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKS-FEGHTNEVNAIKW 412
              +    H+  +    +  + +     ++   ++  L S K V +      +++ ++ +
Sbjct: 273 YSRKFSYHHTNLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVHANILKDADQIWSVNF 332

Query: 413 DPQGLLLASCSDDMTLKIWSLD 434
             +  L+A+   D    +  LD
Sbjct: 333 KGKT-LVAAVEKDGQSFLEILD 353

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 71.1 bits (172), Expect = 6e-14
 Identities = 39/303 (12%), Positives = 82/303 (27%), Gaps = 20/303 (6%)

Query: 314 KSTLGQHKGPIF-ALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQ 372
           ++TL  H   +   L++    NY+++   DK   ++D+ + +   Q S H      + + 
Sbjct: 5   RTTLRGHMTSVITCLQFE--DNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYA 62

Query: 373 SNTSFASCSTDQHIHVCKLHSDKPVKSFEGH--TNEVNAIKWDPQGLLLASCSDDMTLKI 430
                 S STD+ + V  +        FEGH  T     I        + + S D TL +
Sbjct: 63  HGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHV 122

Query: 431 WSLDKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNK 490
           W L K++ V D    +            P         +  +++  G     +     N 
Sbjct: 123 WKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNT 182

Query: 491 RGNYILSAGVDKTTIIWDAASGQCEQQFSFHS---------------APALDVDWQSNTS 535
              + ++       +                                    ++ +     
Sbjct: 183 LIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGH 242

Query: 536 FASCSTDQHIHVCKLHSDKPVKSFEGHTTGQLVHSYKGTGGIFEVCWNSRGDKVGASASD 595
            A     +      + +                        +  +      D +  S S+
Sbjct: 243 TALVGLLRLSDKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGSE 302

Query: 596 GSV 598
              
Sbjct: 303 NQF 305

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 86.8 bits (213), Expect = 5e-19
 Identities = 35/352 (9%), Positives = 78/352 (22%), Gaps = 32/352 (9%)

Query: 117 VHRLTLPLWDVERGECLNTLTRHTEPVYSVAFSPDGKFLASGSFD--KCVHIWSARTGQL 174
           V R    + DV     L         +  V    D K            + I+  RTG+ 
Sbjct: 21  VSRGQAFIQDVSGTYVLKVP--EPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKA 78

Query: 175 VHSYKGTGGIFEVCWNS-RGTPPNPPESMEVDASIEIPQSKATKLIGHESEVFICAWNPV 233
               +  G +F +  +          +  E+                 E+ +     +  
Sbjct: 79  EKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDN 138

Query: 234 KDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGS 293
             F+A G                         +    ++       N    +  ++ +  
Sbjct: 139 SRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTE-------NSHDYAPAFDADSK 191

Query: 294 FLATGSYDGYARIW--------TSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTT 345
            L   SY                   S    +    G     K   R     +   D   
Sbjct: 192 NLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLND 251

Query: 346 I----IWDAASGQCEQQFSFHSAPALDVDWQSNTS----FASCSTDQHIHVCKLHSDKPV 397
           +              +      +  L      +      +        +    + + K  
Sbjct: 252 MYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKV- 310

Query: 398 KSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHDLQAHNKEI 449
                  N +  ++       +    DD  +  + L+K      ++   + +
Sbjct: 311 ---TEVKNNLTDLRLSADRKTVMVRKDDGKIYTFPLEKPEDERTVETDKRPL 359

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 49.9 bits (117), Expect = 4e-07
 Identities = 31/335 (9%), Positives = 76/335 (22%), Gaps = 35/335 (10%)

Query: 290 NNGSFLATGSYDGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTII-- 347
            +G  +A  S  G A I    G+    +      I  ++           G  +   +  
Sbjct: 13  LDGDLIAFVS-RGQAFIQDVSGTYVLKVP-EPLRIRYVRRGGDTKVAFIHGTREGDFLGI 70

Query: 348 WDAASGQCEQQFSFHSAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEGHTNEV 407
           +D  +G+ E+              ++       +    I    L + KP          +
Sbjct: 71  YDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMI 130

Query: 408 NAIKWDPQGLLLASCSDDMTLKIW-SLDKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNM 466
                      +A        +    + +   V+D++       T + S       + + 
Sbjct: 131 TDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDADS 190

Query: 467 SLIFILKS-----------------------TLGQHKGPIFALKWNKRGNYILSAGVDKT 503
             ++ L                          +    G     K   R     +   D  
Sbjct: 191 KNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLN 250

Query: 504 TIIWDAASGQCEQQFSFHSAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEGHT 563
            +   ++          +             S          +         +  ++  T
Sbjct: 251 DMYKRSS--PINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGA-PEKGVLLKYDVKT 307

Query: 564 TGQLVHSYKGTGGIFEVCWNSRGDKVGASASDGSV 598
                        + ++  ++    V     DG +
Sbjct: 308 RKVTEV----KNNLTDLRLSADRKTVMVRKDDGKI 338

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 85.7 bits (210), Expect = 1e-18
 Identities = 38/347 (10%), Positives = 85/347 (24%), Gaps = 37/347 (10%)

Query: 131 ECLNTLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTG----QLVHSYKGTGGIFE 186
           + +       + +  +   P    L   S+D  + ++          L+ S +    +  
Sbjct: 2   QIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLC 61

Query: 187 VCWNSRGTPPNPPESMEVDASIEIPQSKATKLIGHESEVFICAWNPVKDFLASGSGDSTA 246
             +            +++       +     LIG  S   +                   
Sbjct: 62  CNF-------IDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDK 114

Query: 247 RIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFLATGSYDGYARI 306
            I    D   +              K      +         + N S L  G  +   + 
Sbjct: 115 LIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQW 174

Query: 307 W-----TSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASG-------- 353
           +       D       G            K       + +D    +              
Sbjct: 175 FRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSK 234

Query: 354 -------QCEQQFSFHSAPALDVDWQSN-TSFASCSTDQHIHVCKLHSDKPVKSFEGHTN 405
                  +   + +  + P   +++        +  +D  I    L + K +K+F    N
Sbjct: 235 RFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKF-N 293

Query: 406 EVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHDLQAHNKEIYTI 452
           E + +K      +L   + D T K  +         ++ +   IY I
Sbjct: 294 EDSVVKIACSDNILCLATSDDTFKTNAA----IDQTIELNASSIYII 336

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 71.8 bits (174), Expect = 3e-14
 Identities = 33/346 (9%), Positives = 89/346 (25%), Gaps = 26/346 (7%)

Query: 220 GHESEVFICAWNPVKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPS 279
             +  +      P K  L   S D +  ++      K    +L   LR+           
Sbjct: 9   APKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKN--VDLLQSLRY----------- 55

Query: 280 NKDVTSLDWN-NNGSFLATGSYDGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILS 338
              +   ++  N    +  G+  G        GS       +      +    +      
Sbjct: 56  KHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKL 115

Query: 339 AGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVK 398
                  +I                   L+ +     +           +    ++  V+
Sbjct: 116 IAASWDGLIEVIDPRNYGDGVIAVKN--LNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQ 173

Query: 399 SFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHDLQAHNKEIYTIKWSPTG 458
            F     E +    +  G           + +   +++            +         
Sbjct: 174 WFRLPLCEDDNGTIEESG----LKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDD 229

Query: 459 PETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQF 518
             +S         L         P+ +++++ R  ++ +AG D     W+  + +  + F
Sbjct: 230 YNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNF 289

Query: 519 S-FHSAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEGHT 563
           + F+    + +   S+      ++D         +    ++ E + 
Sbjct: 290 AKFNEDSVVKIAC-SDNILCLATSDDTFKT----NAAIDQTIELNA 330

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 62.6 bits (150), Expect = 3e-11
 Identities = 28/312 (8%), Positives = 80/312 (25%), Gaps = 31/312 (9%)

Query: 121 TLPLWDVERGECLNTLTR---HTEPVYSVAFSPD-GKFLASGSFDKCVHIWSARTGQLVH 176
           +L ++  +       L +   +  P+    F  +    +  G+    +            
Sbjct: 34  SLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQ 93

Query: 177 SYKGTGGIFEVCWNSRGTPPNPPESMEVDASIE-IPQSKATKLIGHESEVFICAWNPVKD 235
           +         +C   +        +          P++    +I  ++          K 
Sbjct: 94  ALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKI 153

Query: 236 FLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFL 295
           F    +        + +          +         G       +              
Sbjct: 154 FTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESG----LKYQIRDVALLPKEQEGY 209

Query: 296 ATGSYDGYARIWTSDGSLK----------------STLGQHKGPIFALKWNKRGNYILSA 339
           A  S DG   +   D                            P+ +++++ R  ++ +A
Sbjct: 210 ACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTA 269

Query: 340 GVDKTTIIWDAASGQCEQQFS-FHSAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVK 398
           G D     W+  + +  + F+ F+    + +   S+      ++D         +    +
Sbjct: 270 GSDGIISCWNLQTRKKIKNFAKFNEDSVVKIAC-SDNILCLATSDDTFKT----NAAIDQ 324

Query: 399 SFEGHTNEVNAI 410
           + E + + +  I
Sbjct: 325 TIELNASSIYII 336

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 61.8 bits (148), Expect = 6e-11
 Identities = 34/326 (10%), Positives = 85/326 (26%), Gaps = 33/326 (10%)

Query: 283 VTSLDWNNNGSFLATGSYDGYARIW-----TSDGSLKSTLGQHKGPIFALKWNKRGNYIL 337
           ++ +    + S L   S+DG   ++       +  L  +L  +K P+    +    +  +
Sbjct: 14  ISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLR-YKHPLLCCNFIDNTDLQI 72

Query: 338 SAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKPV 397
             G  +  I+     G    Q   ++   L +                  + ++   +  
Sbjct: 73  YVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNY 132

Query: 398 KSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHDLQAHNKEIYTIKWSPT 457
                    +N+     +  +    ++   L +   +       L     +  TI+ S  
Sbjct: 133 GDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEES-- 190

Query: 458 GPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQ 517
                              G            K       + +D    +        +  
Sbjct: 191 -------------------GLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYN 231

Query: 518 FSFHSAPALDVDWQSNTSFASCSTD-----QHIHVCKLHSDKPVKSFEGHTTGQLVHSYK 572
            S   A         +T+ A          +H  +    SD  +  +   T  + + ++ 
Sbjct: 232 SSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQT-RKKIKNFA 290

Query: 573 GTGGIFEVCWNSRGDKVGASASDGSV 598
                  V      + +  + SD + 
Sbjct: 291 KFNEDSVVKIACSDNILCLATSDDTF 316

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 84.7 bits (207), Expect = 1e-18
 Identities = 38/308 (12%), Positives = 77/308 (25%), Gaps = 16/308 (5%)

Query: 130 GECLNTLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKG--TGGIFEV 187
           G        H + + +++ S DGK L S   +  ++ W   TG     +       I  +
Sbjct: 2   GSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGI 61

Query: 188 CWNSRGTPPNPPESMEVDASIEIPQSKATKLIGHESEVFICAWNPVKDFLASGSGDSTAR 247
              S+G          +              +     V     +       S  GD    
Sbjct: 62  KTTSKGDLFTVSWDDHL-----KVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVA 116

Query: 248 IWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFLATGSYDGYARIW 307
                 +     K  ++ + +  S                 +    +  +G+     +  
Sbjct: 117 ACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTI 176

Query: 308 TSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPAL 367
                + S    + G         R            ++  +             +  A 
Sbjct: 177 VHPAEITSVAFSNNGAFLVATDQSRKVIP-------YSVANNFELAHTNSWTFHTAKVAC 229

Query: 368 DVDWQSNTSFASCSTDQHIHVCKLH--SDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDD 425
                 N   A+ S D  + V  ++  SD P+     H               + S   D
Sbjct: 230 VSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQD 289

Query: 426 MTLKIWSL 433
             +K W++
Sbjct: 290 SNIKFWNV 297

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 66.5 bits (160), Expect = 1e-12
 Identities = 33/283 (11%), Positives = 81/283 (28%), Gaps = 15/283 (5%)

Query: 280 NKDVTSLDWNNNGSFLATGSYDGYARIW-TSDGSLKSTLGQ-HKGPIFALKWNKRGNYIL 337
           NK +T+L  + +G  L +   +G+   W  S G         H   I  +K   +G+   
Sbjct: 12  NKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFT 71

Query: 338 SAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKPV 397
            +  D   ++    SG    +   +   +  +    +          + H+      K  
Sbjct: 72  VSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLT 131

Query: 398 KSFEGHTNEVNAIK----------WDPQGLLLASCSDDMTLKIWSLDKDNCVHDLQAHNK 447
           +    + +   A+            D +  +       ++     +          ++N 
Sbjct: 132 EVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNG 191

Query: 448 EIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIW 507
                          +   +      ++   H   +  + W+     + +  +D + I+W
Sbjct: 192 AFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVW 251

Query: 508 DAASGQCEQQFSF---HSAPALDVDWQSNTSFASCSTDQHIHV 547
           +                 +    V W + T+  S   D +I  
Sbjct: 252 NMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKF 294

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 52.3 bits (123), Expect = 6e-08
 Identities = 18/188 (9%), Positives = 38/188 (20%), Gaps = 1/188 (0%)

Query: 397 VKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHDL-QAHNKEIYTIKWS 455
            +   GH   + A+     G  L S   +  +  W +            H   I  IK +
Sbjct: 5   DQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTT 64

Query: 456 PTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCE 515
             G   +      + ++ +                     L+   D    +         
Sbjct: 65  SKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAI 124

Query: 516 QQFSFHSAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEGHTTGQLVHSYKGTG 575
                 +   +  +                          +          +VH  + T 
Sbjct: 125 YSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITS 184

Query: 576 GIFEVCWN 583
             F     
Sbjct: 185 VAFSNNGA 192

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 51.1 bits (120), Expect = 1e-07
 Identities = 17/84 (20%), Positives = 28/84 (33%), Gaps = 1/84 (1%)

Query: 472 LKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFS-FHSAPALDVDW 530
           +      H   I AL  +  G  + SA  +     WD ++G   + F   H+     +  
Sbjct: 4   IDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKT 63

Query: 531 QSNTSFASCSTDQHIHVCKLHSDK 554
            S     + S D H+ V       
Sbjct: 64  TSKGDLFTVSWDDHLKVVPAGGSG 87

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 47.7 bits (111), Expect = 2e-06
 Identities = 31/272 (11%), Positives = 74/272 (27%), Gaps = 16/272 (5%)

Query: 121 TLPLWDVERGECLNTLTR-HTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYK 179
            +  WD+  G         H   +  +  +     L + S+D  + +  A    +  S  
Sbjct: 35  HINSWDISTGISNRVFPDVHATMITGIKTTSK-GDLFTVSWDDHLKVVPAGGSGVDSSKA 93

Query: 180 GTGGIFEVCWNSRGTPPNPPESMEVDASIEIPQSKATKLIGHESEVFICAWNPVKDFLAS 239
               +         +             I I        +         A +  K F+A 
Sbjct: 94  VANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAV 153

Query: 240 GSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFLATGS 299
           G  DS   ++ ++ ++              +              S +     +   +  
Sbjct: 154 GGQDSKVHVYKLSGAS-----------VSEVKTIVHPAEITSVAFSNNGAFLVATDQSRK 202

Query: 300 YDGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQF 359
              Y+     + +  ++   H   +  + W+     + +  +D + I+W+          
Sbjct: 203 VIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPII 262

Query: 360 SF---HSAPALDVDWQSNTSFASCSTDQHIHV 388
                  +    V W + T+  S   D +I  
Sbjct: 263 IKGAHAMSSVNSVIWLNETTIVSAGQDSNIKF 294

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 45.4 bits (105), Expect = 1e-05
 Identities = 5/50 (10%), Positives = 18/50 (36%), Gaps = 2/50 (4%)

Query: 121 TLPLWDVERGECLNTLTR--HTEPVYSVAFSPDGKFLASGSFDKCVHIWS 168
           ++ +W++ +      + +  H     +     +   + S   D  +  W+
Sbjct: 247 SVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFWN 296

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 78.8 bits (192), Expect = 1e-16
 Identities = 38/268 (14%), Positives = 60/268 (22%), Gaps = 5/268 (1%)

Query: 124 LWDVERGECLNTLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKGTGG 183
              V         T H+        SP G + ASG     V IW                
Sbjct: 42  TVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTT-HILKTTIPV 100

Query: 184 IFEVCWNSRGTPPNPPESMEVDASIEIPQSKATKLIGHESEVFICAWNPVKDFLASGSGD 243
                 +      +   +   +                   +   A              
Sbjct: 101 FSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPF 160

Query: 244 STARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFLATGSYDGY 303
                 D       +    +                     SL  +  G           
Sbjct: 161 RIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVD 220

Query: 304 ARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHS 363
                           H G +F L W+  G  I SA  DKT  IW+ A+ + E+     +
Sbjct: 221 GTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGT 280

Query: 364 A---PALDVDWQSNTSFASCSTDQHIHV 388
                 L + W +  +  S S +  I+ 
Sbjct: 281 RIEDQQLGIIW-TKQALVSISANGFINF 307

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 68.4 bits (165), Expect = 3e-13
 Identities = 35/366 (9%), Positives = 79/366 (21%), Gaps = 76/366 (20%)

Query: 143 VYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKGTGGIFEVCWNSRGTPPNPPESM 202
              +  +P G  +   +    V+     +      Y                        
Sbjct: 20  AVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYT----------------------- 55

Query: 203 EVDASIEIPQSKATKLIGHESEVFICAWNPVKDFLASGSGDSTARIWDMTDSTKKDPKEL 262
                             H  +  +   +P   + ASG      RIWD T +T      +
Sbjct: 56  -----------------EHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTI 98

Query: 263 QIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFLATGSYDGYARIWTSDGSLKSTLGQHKG 322
            +          +    +K + ++               G +    +  +        K 
Sbjct: 99  PVFSGPVKDI--SWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKP 156

Query: 323 PIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTSFASCST 382
                  +   +  ++                 +   S    P   +   +         
Sbjct: 157 SRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLY 216

Query: 383 DQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHDL 442
           +          +        H+  V  + W P G  +AS S D T+KIW++        +
Sbjct: 217 NGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTI 276

Query: 443 QAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDK 502
                                              + +     + W      ++S   + 
Sbjct: 277 PVGT-------------------------------RIEDQQLGIIWT--KQALVSISANG 303

Query: 503 TTIIWD 508
                +
Sbjct: 304 FINFVN 309

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 68.0 bits (164), Expect = 5e-13
 Identities = 36/289 (12%), Positives = 71/289 (24%), Gaps = 25/289 (8%)

Query: 283 VTSLDWNNNGSFLATGSYDGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVD 342
              L     G  +   +      +     +      +H       K +  G Y  S  V 
Sbjct: 20  AVVLGNTPAGDKIQYCNGTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVH 79

Query: 343 KTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEG 402
               IWD        + +         D   ++     +          H          
Sbjct: 80  GNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSN 139

Query: 403 HTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHDLQAHNKEIYTIKWSPTGPETS 462
                 A   +      +     ++    +          +  +      K+  +     
Sbjct: 140 GNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNP 199

Query: 463 NPNMSLI---------------------FILKSTLGQHKGPIFALKWNKRGNYILSAGVD 501
           + ++                                 H G +F L W+  G  I SA  D
Sbjct: 200 DGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASAD 259

Query: 502 KTTIIWDAASGQCEQQFSFHSA---PALDVDWQSNTSFASCSTDQHIHV 547
           KT  IW+ A+ + E+     +      L + W +  +  S S +  I+ 
Sbjct: 260 KTIKIWNVATLKVEKTIPVGTRIEDQQLGIIW-TKQALVSISANGFINF 307

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 48.7 bits (114), Expect = 9e-07
 Identities = 20/127 (15%), Positives = 33/127 (25%), Gaps = 39/127 (30%)

Query: 125 WDVERGECLNTLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKGTGGI 184
                 +       H+  V+ + +SPDG  +AS S DK + IW+  T ++  +       
Sbjct: 223 KTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPV---- 278

Query: 185 FEVCWNSRGTPPNPPESMEVDASIEIPQSKATKLIGHESEVFICAWNPVKDFLASGSGDS 244
                                              G   E         K  L S S + 
Sbjct: 279 -----------------------------------GTRIEDQQLGIIWTKQALVSISANG 303

Query: 245 TARIWDM 251
                + 
Sbjct: 304 FINFVNP 310

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 45.7 bits (106), Expect = 8e-06
 Identities = 8/48 (16%), Positives = 18/48 (37%), Gaps = 1/48 (2%)

Query: 121 TLPLWDVERGECLNTLTRHTE-PVYSVAFSPDGKFLASGSFDKCVHIW 167
           T+ +W+V   +   T+   T      +      + L S S +  ++  
Sbjct: 261 TIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFV 308

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 44.5 bits (103), Expect = 2e-05
 Identities = 20/90 (22%), Positives = 33/90 (36%), Gaps = 15/90 (16%)

Query: 221 HESEVFICAWNPVKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSN 280
           H   VF   W+P    +AS S D T +IW++  +T K  K +              V + 
Sbjct: 237 HSGSVFGLTWSPDGTKIASASADKTIKIWNV--ATLKVEKTI-------------PVGTR 281

Query: 281 KDVTSLDWNNNGSFLATGSYDGYARIWTSD 310
            +   L        L + S +G+      +
Sbjct: 282 IEDQQLGIIWTKQALVSISANGFINFVNPE 311

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 77.3 bits (188), Expect = 3e-16
 Identities = 41/304 (13%), Positives = 85/304 (27%), Gaps = 22/304 (7%)

Query: 130 GECLNTLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKGTGGIFEVCW 189
            E L T++ H + + ++  +P    L SGS+D  +  WS+ +    H    +  I  +  
Sbjct: 3   DEVLKTISGHNKGITALTVNP----LISGSYDGRIMEWSSSSMHQDH----SNLIVSLDN 54

Query: 190 NSRGTPPNPPESMEVDASIEIPQSKATKLIGHESEVFICAWNPVKDFLASGSGDSTARIW 249
           +             +     +  +  TK           A N     + +   D      
Sbjct: 55  SKAQE------YSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQS 108

Query: 250 DMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFLATGSYDGYARIWTS 309
              D  K                         +   +   ++            A+    
Sbjct: 109 FTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYI 168

Query: 310 DGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDV 369
             S   T       +  +      +       +  T  W   + +        +    + 
Sbjct: 169 SISPSETYIAAGDVMGKILLYDLQSR------EVKTSRWAFRTSKINAISWKPAEKGANE 222

Query: 370 DWQSNTSFASCSTDQHIHVCKLHSD-KPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTL 428
           +       A+ S D +I +  +    K +K+   H + VN + W+     L S   D  +
Sbjct: 223 EEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPS-TLVSSGADACI 281

Query: 429 KIWS 432
           K W+
Sbjct: 282 KRWN 285

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 65.4 bits (157), Expect = 3e-12
 Identities = 35/279 (12%), Positives = 75/279 (26%), Gaps = 19/279 (6%)

Query: 280 NKDVTSLDWNNNGSFLATGSYDGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSA 339
           NK +T+L      + L +GSYDG    W    S  S    H   I +L  +K   Y   +
Sbjct: 13  NKGITALTV----NPLISGSYDGRIMEW----SSSSMHQDHSNLIVSLDNSKAQEYSSIS 64

Query: 340 GVDKTTIIWDAASGQCEQQFSFHSAPA----------LDVDWQSNTSFASCSTDQHIHVC 389
             D   +          Q     +               +  QS T     S   +    
Sbjct: 65  WDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGS 124

Query: 390 KLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHDLQAHNKEI 449
            +   +   +          +       +       +  K   +        + A +   
Sbjct: 125 AVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMG 184

Query: 450 YTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDA 509
             + +     E      +      + +        A +     + + +  +D    I+  
Sbjct: 185 KILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSV 244

Query: 510 AS-GQCEQQFSFHSAPALDVDWQSNTSFASCSTDQHIHV 547
               +  +  + H     ++ W++ ++  S   D  I  
Sbjct: 245 KRPMKIIKALNAHKDGVNNLLWETPSTLVSSGADACIKR 283

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 53.0 bits (125), Expect = 3e-08
 Identities = 23/159 (14%), Positives = 43/159 (27%), Gaps = 9/159 (5%)

Query: 393 SDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHDLQAHNKEIYTI 452
            D+ +K+  GH   + A+  +P    L S S D  +  WS          Q H+  I ++
Sbjct: 2   HDEVLKTISGHNKGITALTVNP----LISGSYDGRIMEWSSSS-----MHQDHSNLIVSL 52

Query: 453 KWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASG 512
             S     +S      + +   T  +          N  G   +    D   I+      
Sbjct: 53  DNSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGD 112

Query: 513 QCEQQFSFHSAPALDVDWQSNTSFASCSTDQHIHVCKLH 551
             +         A+ +                +      
Sbjct: 113 IIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDL 151

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 48.8 bits (114), Expect = 8e-07
 Identities = 10/49 (20%), Positives = 22/49 (44%), Gaps = 2/49 (4%)

Query: 121 TLPLWDVER-GECLNTLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWS 168
            + ++ V+R  + +  L  H + V ++ +      L S   D C+  W+
Sbjct: 238 NIFIYSVKRPMKIIKALNAHKDGVNNLLWETPST-LVSSGADACIKRWN 285

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.6 bits (85), Expect = 0.003
 Identities = 17/126 (13%), Positives = 31/126 (24%), Gaps = 40/126 (31%)

Query: 125 WDVERGECLNTLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKGTGGI 184
               R   +N ++       +     +   +A+GS D  + I+S +              
Sbjct: 200 RWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKR------------- 246

Query: 185 FEVCWNSRGTPPNPPESMEVDASIEIPQSKATKLIGHESEVFICAWNPVKDFLASGSGDS 244
                                     P      L  H+  V    W      L S   D+
Sbjct: 247 --------------------------PMKIIKALNAHKDGVNNLLWET-PSTLVSSGADA 279

Query: 245 TARIWD 250
             + W+
Sbjct: 280 CIKRWN 285

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 75.2 bits (183), Expect = 3e-15
 Identities = 26/336 (7%), Positives = 85/336 (25%), Gaps = 33/336 (9%)

Query: 146 VAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYK--GTGGIFEVCWNSRG-----TPPNP 198
            A     +++   ++   +H+    +  +  S       G                  + 
Sbjct: 2   PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHY 61

Query: 199 PESMEVDASIEIPQ---SKATKLIGHESEVFICAWNPVKDFLASGSGDSTARIWDMTDST 255
            +   +D          + ++        ++  A +P    + +    +           
Sbjct: 62  GDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKP 121

Query: 256 KK-------DPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFLATGSYDGYARIWT 308
            +       D  E + V    + +    + +  D +      +   +   +      +  
Sbjct: 122 PRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVALPL 181

Query: 309 SDGSLKSTL--------------GQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQ 354
            + + K                  +        ++        +A +    +  D  +G+
Sbjct: 182 RNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGK 241

Query: 355 CEQQ-FSFHSAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWD 413
              Q F+  +                      +    L   K +K+     +    + +D
Sbjct: 242 THTQEFADLTELYFTGLRSPKDPNQIYGVLNRLAKYDLKQRKLIKAAN-LDHTYYCVAFD 300

Query: 414 PQGLLLASCSDDMTLKIWSLDKDNCVHDLQAHNKEI 449
            +G  L        L +++ D    V +++    ++
Sbjct: 301 KKGDKLYLGGTFNDLAVFNPDTLEKVKNIKLPGGDM 336

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 59.0 bits (141), Expect = 5e-10
 Identities = 22/246 (8%), Positives = 58/246 (23%), Gaps = 36/246 (14%)

Query: 122 LPLWDVERGECLNTLTRHT--EPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYK 179
           L ++    G     +        VY +  + DG    +G     ++    +TG+   +  
Sbjct: 124 LEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGP---DIYKMDVKTGKYTVALP 180

Query: 180 GTGGIFEVCWNSRGTPPNPPESMEVDASIEIPQSKATKLIGHESEVFICAWNPVKDFLAS 239
                 +           P +S   +                     I  +   K   A+
Sbjct: 181 LRNWNRKGYSAPDVLYFWPHQSPRHE---------------FSMLYTIARFKDDKQDPAT 225

Query: 240 GSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFLATGS 299
                     D               L+   +         +   +   +        G 
Sbjct: 226 ADLLYGYLSVD---------------LKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV 270

Query: 300 YDGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQF 359
            +  A+       L           + + ++K+G+ +   G      +++  + +  +  
Sbjct: 271 LNRLAKYDLKQRKLIKAANLDHTY-YCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNI 329

Query: 360 SFHSAP 365
                 
Sbjct: 330 KLPGGD 335

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 58.6 bits (140), Expect = 6e-10
 Identities = 14/63 (22%), Positives = 26/63 (41%), Gaps = 1/63 (1%)

Query: 121 TLPLWDVERGECLNTLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKG 180
            L  +D+++ + +          Y VAF   G  L  G     + +++  T + V + K 
Sbjct: 273 RLAKYDLKQRKLIKAAN-LDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKL 331

Query: 181 TGG 183
            GG
Sbjct: 332 PGG 334

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 75.2 bits (183), Expect = 3e-15
 Identities = 39/354 (11%), Positives = 76/354 (21%), Gaps = 43/354 (12%)

Query: 121 TLPLWDVERGECLNTLTRHTEPVYSVAFSPDGKFLA----------SGSFDKCVHIWSAR 170
              + D E G  +  +     P  +   + DG F+A           G     V ++   
Sbjct: 29  QQFVIDGEAGRVIGMIDGGFLP--NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPV 86

Query: 171 TGQLVHS-YKGTGGIFEVCWNSRGTPPNPPESMEVDASIEIPQSKATKLIGHESEVFICA 229
           T              F V      T   P     +        +     +  ++      
Sbjct: 87  TLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFK---R 143

Query: 230 WNPVKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWN 289
              V D                 D +                           +    ++
Sbjct: 144 MLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYS 203

Query: 290 NNGSFLATGSYDGYARIWTSDG---SLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTI 346
                L   +Y G                 +        A  W   G   ++       I
Sbjct: 204 QKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRI 263

Query: 347 IWDAASGQCEQQFSFHSAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEGHTNE 406
                                         +   +  + + V    + + +  FE   +E
Sbjct: 264 YLLVDQR---------------------DEWRHKTASRFVVVLDAKTGERLAKFEMG-HE 301

Query: 407 VNAIKWDPQG--LLLASCSDDMTLKIWSLDKDNCVHDLQAHNKEIYTIKWSPTG 458
           +++I        LL A  + D TL I   +    +  +         I  +  G
Sbjct: 302 IDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQLGHGPQVITTADMG 355

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 63.7 bits (153), Expect = 2e-11
 Identities = 47/397 (11%), Positives = 94/397 (23%), Gaps = 72/397 (18%)

Query: 141 EPVYSVAFSPDGKFL-----ASGSFDKCVHIWSARTGQLVHSYKGTGGIFEVCWNSRGTP 195
           EP    A +PD + +     A  +      +     G+++    G G +        G+ 
Sbjct: 2   EPRILEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDG-GFLPNPVVADDGS- 59

Query: 196 PNPPESMEVDASIEIPQSKATKLIGHESEVFICAWNPVKDFLASGSGDSTARIWDMTDST 255
                                         FI   + V   +A G       ++D     
Sbjct: 60  ------------------------------FIAHASTVFSRIARGERTDYVEVFDPVTLL 89

Query: 256 KKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFLATGSYDGYARIWTSDGSLKS 315
                                              +G  L    +     +   D   K+
Sbjct: 90  ---------PTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKA 140

Query: 316 TLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNT 375
                  P     +    +       D +       +    +          D    ++ 
Sbjct: 141 FKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHP 200

Query: 376 SF-------ASCSTDQHIHVCKLHSDKP--VKSFEGHTNEVNAIKWDPQGLLLASCSDDM 426
           ++          +    IH   L S     + + E  T    A  W P G    +    +
Sbjct: 201 AYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRAL 260

Query: 427 TLKIWSLDKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFAL 486
                 +D+ +      A       +  + TG   +                    I ++
Sbjct: 261 DRIYLLVDQRDEWRHKTASRF--VVVLDAKTGERLAKFE-------------MGHEIDSI 305

Query: 487 KWNKRGNYIL--SAGVDKTTIIWDAASGQCEQQFSFH 521
             ++    +L   +  DKT  I DA SG+  +  +  
Sbjct: 306 NVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQL 342

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 74.5 bits (181), Expect = 4e-15
 Identities = 24/319 (7%), Positives = 66/319 (20%), Gaps = 28/319 (8%)

Query: 121 TLPLWDVERGECLNTLTRHTEP--VYSVAFSPDGKFL-ASGSFDKCVHIWSARTGQLVHS 177
            L + D E+      +T             +P G+   A+ +  + +      TG+ +  
Sbjct: 12  KLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGR 71

Query: 178 YKGTGG------------------IFEVCWNSRGTPPNPPESMEVDASIEIPQSKATKLI 219
              +                    +       R    +        A  +       K  
Sbjct: 72  IDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAF 131

Query: 220 GHESEVFICAWNPVKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPS 279
               ++ + AW      L     D      +     +  P +      +           
Sbjct: 132 EAPRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQ 191

Query: 280 NKD-----VTSLDWNNNGSFLATGSYDGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGN 334
           ++              +       +Y         +    +        +F         
Sbjct: 192 HESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPA 251

Query: 335 YILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTSF-ASCSTDQHIHVCKLHS 393
              + G       +D       ++          V+  ++ S          +      +
Sbjct: 252 KTRAFGAYNVLESFDLEKNASIKRVP-LPHSYYSVNVSTDGSTVWLGGALGDLAAYDAET 310

Query: 394 DKPVKSFEGHTNEVNAIKW 412
            +     +   N   ++  
Sbjct: 311 LEKKGQVDLPGNASMSLAS 329

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 53.7 bits (127), Expect = 3e-08
 Identities = 26/386 (6%), Positives = 80/386 (20%), Gaps = 66/386 (17%)

Query: 153 KFLASGSFDKCVHIWSARTGQLVHSYKGTGGIFEVCWNSRGTPPNPPESMEVDASIEIPQ 212
            ++ + +    + +       +                                      
Sbjct: 2   DYILAPARPDKLVVIDTEKMAVDKV----------------------------------- 26

Query: 213 SKATKLIGHESEVFICAWNPVKDFL-ASGSGDSTARIWDMTDSTKKDPKELQIVLRHCIS 271
                +        +    P      A+ +   +    D+         +L        S
Sbjct: 27  ---ITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKS 83

Query: 272 KGGTEV-PSNKDVTSLDWNNNGSFLATGSYDGYARIWTSDGSLKSTLGQHKGPIFALKWN 330
             G  + P  K +   +                  ++ ++   +    +    I  L W 
Sbjct: 84  LFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWA 143

Query: 331 KRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTSFASCSTDQHIHVCK 390
           + G+ +   G D   +  +  +G   +     S  A         +  +           
Sbjct: 144 RDGSKLYGLGRDLHVMDPE--AGTLVEDKPIQSWEAETYAQPDVLAVWNQHESS------ 195

Query: 391 LHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVH-DLQAHNKEI 449
                                           +    L    L+       +++  +   
Sbjct: 196 ------------GVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFY 243

Query: 450 YTIKWSPTGPETSNPNMSLIFILKSTLGQ-----HKGPIFALKWNKRGNYILSAGVDKTT 504
           ++   +P           L                    +++  +  G+ +   G     
Sbjct: 244 FSTAVNPAKTRAFGAYNVLESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVWLGGALGDL 303

Query: 505 IIWDAASGQCEQQFSFHSAPALDVDW 530
             +DA + + + Q       ++ +  
Sbjct: 304 AAYDAETLEKKGQVDLPGNASMSLAS 329

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 71.1 bits (172), Expect = 5e-14
 Identities = 37/297 (12%), Positives = 75/297 (25%), Gaps = 19/297 (6%)

Query: 110 AITNGEEVHRLTLPLWDVERGECLNTLTRHTEPVYSVAFSP--DGKFLASGSFDKCVHIW 167
           A   G+      L   D +    +      +  V +V FSP    ++L SG     V +W
Sbjct: 33  AYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVW 92

Query: 168 SARTGQLVHSYKG---------TGGIFEVCWNSRGTPPNPPESMEVDASIEIPQSKATKL 218
                +  +S +           G I ++ W+  G           +  + I        
Sbjct: 93  GWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDS---- 148

Query: 219 IGHESEVFICAWNPVKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVP 278
                EV   +       L       +  + D            +               
Sbjct: 149 GNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFV 208

Query: 279 SNKDVTSLDWNNNGSFLATGSYDGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILS 338
            + + +        +  +      +               +                  +
Sbjct: 209 RDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFAT 268

Query: 339 AGVDKTTIIWDAASGQCEQQFSFHSAP----ALDVDWQSNTSFASCSTDQHIHVCKL 391
            G D T  +WD  + +C Q+++          + V    N    S S D  ++  +L
Sbjct: 269 VGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYEL 325

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 66.9 bits (161), Expect = 1e-12
 Identities = 46/340 (13%), Positives = 88/340 (25%), Gaps = 56/340 (16%)

Query: 229 AWNPVKDFLASGSGDSTA-RIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLD 287
           +++P  + +A   G S   R  D  DS      +      H           +  VT++ 
Sbjct: 24  SYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFT---GH----------GSSVVTTVK 70

Query: 288 W--NNNGSFLATGSYDGYARIW---------TSDGSLKSTLGQHKGPIFALKWNKRGNYI 336
           +       +L +G   G   +W         + + ++KS      GPI  + W+  G  +
Sbjct: 71  FSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRL 130

Query: 337 LSAGV--DKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTSFASCSTDQHIHVCKLHSD 394
              G   D   +     SG    + S HS        + +    S +      V      
Sbjct: 131 CVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGP 190

Query: 395 KPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHDLQAHNKEIYTIKW 454
               S                              +  ++      +          I  
Sbjct: 191 PFKFSASDR------------------THHKQGSFVRDVEFSPDSGEFVITVGSDRKISC 232

Query: 455 SPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQC 514
                      +           +                  + G D T  +WD  + +C
Sbjct: 233 FDGKSGEFLKYIEDDQ-------EPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKC 285

Query: 515 EQQFSFHSAP----ALDVDWQSNTSFASCSTDQHIHVCKL 550
            Q+++          + V    N    S S D  ++  +L
Sbjct: 286 VQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYEL 325

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 55.7 bits (132), Expect = 6e-09
 Identities = 36/325 (11%), Positives = 81/325 (24%), Gaps = 33/325 (10%)

Query: 283 VTSLDWNNNGSFLATGSYDG-YARIWTSDGS----LKSTLGQHKGPIFALKW--NKRGNY 335
            T L ++   + +A       + R      S    +    G     +  +K+   K   Y
Sbjct: 20  TTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQY 79

Query: 336 ILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTSFASCSTDQHIHVCKLHSDK 395
           + S       I+W     +       +      V     +  +     + + V     D 
Sbjct: 80  LCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDN 139

Query: 396 PVKSFEGHTNEVNA-IKWDPQGLLLASCSDDMTLKIWSLDKDNCVHDLQAHNKEIYTIKW 454
                   +      +    Q +          ++  ++  D  V   Q    +      
Sbjct: 140 FGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDR 199

Query: 455 SPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQC 514
           +     +   ++         +           ++ +                       
Sbjct: 200 THHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGK---------------SGEFLKYI 244

Query: 515 EQQFSFHSAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEGHTTGQLVHSYKGT 574
           E            + W  +  FA+   D  I V  + + K V+ +            K  
Sbjct: 245 EDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLD---------KQQ 295

Query: 575 GGIFEVCWNSRGDKVGASAS-DGSV 598
            G  +V   + G+    S S DG++
Sbjct: 296 LGNQQVGVVATGNGRIISLSLDGTL 320

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 53.8 bits (127), Expect = 2e-08
 Identities = 36/308 (11%), Positives = 80/308 (25%), Gaps = 19/308 (6%)

Query: 143 VYSVAFSPDGKFLASGSFDK-CVHIWSARTGQLVHSYKGTGGIFEVCWNSRGTPPNPPE- 200
              +++ P    +A        V        ++    + TG    V    + +P    + 
Sbjct: 20  TTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQY 79

Query: 201 --SMEVDASIEIPQSKA----TKLIGHESEVFICAWNPVKDFLASGSGDSTARIWDMTDS 254
             S +    + +           +  +    F     P+ D      G     + +  D+
Sbjct: 80  LCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDN 139

Query: 255 TKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFLATGSYDGYARIWTSDGSLK 314
                          +S     + +     S     + +    GS   Y        +  
Sbjct: 140 FGVFISWDSGNSLGEVSGHSQRINACHLKQS-RPMRSMTVGDDGSVVFYQGPPFKFSASD 198

Query: 315 STLGQHKGPIFALKWNKRGNYILSAGVDKTTI-----IWDAASGQCEQQFSFHSAPALDV 369
            T  +    +  ++++      +        I              E            +
Sbjct: 199 RTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFAL 258

Query: 370 DWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEGHTNEVN----AIKWDPQGLLLASCSDD 425
            W  +  FA+   D  I V  + + K V+ +     ++      +     G  + S S D
Sbjct: 259 SWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNG-RIISLSLD 317

Query: 426 MTLKIWSL 433
            TL  + L
Sbjct: 318 GTLNFYEL 325

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 61.9 bits (149), Expect = 7e-11
 Identities = 30/330 (9%), Positives = 70/330 (21%), Gaps = 51/330 (15%)

Query: 238 ASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFLAT 297
                  T   W               +     +     V  +        + + +  A 
Sbjct: 38  LPAYFAGTTENWVS------CAGCGVTLGHSLGAFLSLAVAGHSGSDFALASTSFARSAK 91

Query: 298 GSYDGYARIW-TSDGSLKSTLGQHKGPIFALK-------WNKRGNYILSAGVDKTTI-IW 348
           G    Y  ++        + +     P F++               +L      +     
Sbjct: 92  GKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGL 151

Query: 349 DAASGQCEQQFSFHSAPALDVDWQSNTSFASCSTDQHIHVCKL------HSDKPVKSFEG 402
                  +Q     S   +     +  +    S    +    L            +    
Sbjct: 152 SVPGASDDQLTKSASCFHIHPG--AAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGA 209

Query: 403 HTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHDLQAHNKEIYTIKWSPTGPE-- 460
                 A + +  G+L+ + +  +               +  +        +   G +  
Sbjct: 210 QNCSSQAAQANYPGMLVWAVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMV 269

Query: 461 TSNPNMSLIFILKSTLGQ------------------------HKGPIFALKWNKRGNYIL 496
               N   I IL     +                        +     A+   + G    
Sbjct: 270 AKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGHDSDAIIAAQDGASDN 329

Query: 497 --SAGVDKTTIIWDAASGQCEQQFSFHSAP 524
             ++   +   I+DAAS Q +        P
Sbjct: 330 YANSAGTEVLDIYDAASDQDQSSVELDKGP 359

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 60.8 bits (146), Expect = 1e-10
 Identities = 35/356 (9%), Positives = 74/356 (20%), Gaps = 79/356 (22%)

Query: 120 LTLPLWDVERGECLNTLTRHTEPVYSVAFSPDGKFLA----------SGSFDKCVHIWSA 169
               +     G  L         +        G   A           G     V ++  
Sbjct: 46  TENWVSCAGCGVTLGHSLGAFLSL--AVAGHSGSDFALASTSFARSAKGKRTDYVEVFDP 103

Query: 170 RTGQLVHSYKGTGGIFEVCWNSRGTPPNPPESMEVDASIEIPQSKATKLIGHESEVFICA 229
            T   +                                IE+P +    +      +  CA
Sbjct: 104 VTFLPIA------------------------------DIELPDAPRFSVGPRVHIIGNCA 133

Query: 230 WNPVKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWN 289
            +     L    G S A    +  ++           +   S     +      T    +
Sbjct: 134 SS--ACLLFFLFGSSAAAGLSVPGAS---------DDQLTKSASCFHIHPGAAATHYLGS 182

Query: 290 NNGSFLATGSYDGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWD 349
              S  A+      A             G       A + N  G  + +           
Sbjct: 183 CPASLAASDLAAAPAAAGI---VGAQCTGAQNCSSQAAQANYPGMLVWAVASSILQGDIP 239

Query: 350 AASGQCEQQFSFHSAPALDVDWQ--------------------SNTSFASCSTDQHIHVC 389
           AA    +     + +     +++                       S +  +  ++    
Sbjct: 240 AAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSV 299

Query: 390 KLHSDKPVKSFEGHTNEVNAIKWDPQG--LLLASCSDDMTLKIWSLDKDNCVHDLQ 443
                +         ++ +AI     G     A+ +    L I+    D     ++
Sbjct: 300 TASVGQTSGPISNG-HDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVE 354

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 58.5 bits (140), Expect = 9e-10
 Identities = 27/267 (10%), Positives = 56/267 (20%), Gaps = 26/267 (9%)

Query: 121 TLPLWDVERGECLNTLTRHTEPV-------YSVAFSPDGKFLASGSF-DKCVHIWSARTG 172
            + ++D      +  +     P        + +        L    F        S    
Sbjct: 97  YVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGA 156

Query: 173 QLVHSYKGTGGIFEVCWNSRGTPPNPPESMEV-----DASIEIPQSKATKLIGHESEVFI 227
                 K           +         +         A        A            
Sbjct: 157 SDDQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQA 216

Query: 228 CAWNPVKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLD 287
              N     + + +            +T K   +     R           +   + +  
Sbjct: 217 AQANYPGMLVWAVASSILQGDIPAAGATMKAAIDGNESGRK----ADNFRSAGFQMVAKL 272

Query: 288 WNNNGSFLATG-----SYDGYARIWTSDGSLKSTLGQ--HKGPIFALKWNKRGNYIL--S 338
            N +G  + T               +   S+  T G   +     A+   + G      +
Sbjct: 273 KNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGHDSDAIIAAQDGASDNYAN 332

Query: 339 AGVDKTTIIWDAASGQCEQQFSFHSAP 365
           +   +   I+DAAS Q +        P
Sbjct: 333 SAGTEVLDIYDAASDQDQSSVELDKGP 359

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 59.0 bits (142), Expect = 7e-10
 Identities = 42/408 (10%), Positives = 102/408 (25%), Gaps = 60/408 (14%)

Query: 121 TLPLWDVERGECLNTLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKG 180
            + L D    E    L       +    S  G++L     D  V++      +       
Sbjct: 43  QIALIDGSTYEIKTVLDTGYAV-HISRLSASGRYLFVIGRDGKVNMIDLWMKEP------ 95

Query: 181 TGGIFEVCWNSRGTPPNPPESMEVDASIEIPQSKATKLIGHESEVFICAWNPV-KDFLAS 239
                                    A I+I            S           K  +A 
Sbjct: 96  ----------------------TTVAEIKI-------GSEARSIETSKMEGWEDKYAIAG 126

Query: 240 GSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGS-FLATG 298
                   I D         +  +I     ++    E      V ++  ++    F+   
Sbjct: 127 AYWPPQYVIMDGE-----TLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNV 181

Query: 299 SYDGYARIWTSD--GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCE 356
              G   +       +LK+T    +  +     +    Y ++A   +  ++         
Sbjct: 182 KETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKL 241

Query: 357 QQFSFHSAPALDVDWQSNTS---FASCSTDQHI--HVCKLHSDKPVKSFEGHTNEVNAIK 411
                           +N     F       H+      L    P      +  ++    
Sbjct: 242 VAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPEG-HPDNAWKILDSF 300

Query: 412 WDPQGLLLASCSDDMTLKIWSLDKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFI 471
               G  L   +   +  ++     N   ++      +          + S+P    + I
Sbjct: 301 PALGGGSLFIKTHPNSQYLYVDATLNPEAEIS---GSVAVFDIKAMTGDGSDPEFKTLPI 357

Query: 472 LK-STLGQHKGPIFALKWNKRGNYIL----SAGVDKTTI-IWDAASGQ 513
            + + + + +  +   ++NK G  +     +    ++ + + D  + +
Sbjct: 358 AEWAGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLE 405

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 45.6 bits (107), Expect = 1e-05
 Identities = 23/261 (8%), Positives = 63/261 (24%), Gaps = 31/261 (11%)

Query: 321 KGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTSFASC 380
              +     +    + ++        + D ++ + +       A  +     S       
Sbjct: 22  TQQMNDW--DLENLFSVTLRDAGQIALIDGSTYEIKTVLDTGYAVHISRLSASGRYLFVI 79

Query: 381 STDQHIHVCKLHSDKP-----VKSFEGHTNEVNAIKWDPQG-LLLASCSDDMTLKIWSLD 434
             D  +++  L   +P     +K      +   +     +    +A         I   +
Sbjct: 80  GRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGE 139

Query: 435 KDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNY 494
                             ++ P               + + L  H  P F          
Sbjct: 140 TLEPKKIQSTRGMTYDEQEYHPEPR------------VAAILASHYRPEF---------- 177

Query: 495 ILSAGVDKTTIIWDAASGQCEQQFSFHSAPAL-DVDWQSNTSFASCSTDQHIHVCKLHSD 553
           I++       ++ D       +     +   L D     +  +   + +    +  + + 
Sbjct: 178 IVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTK 237

Query: 554 KPVKSFEGHTTGQLVHSYKGT 574
           +        T GQ  H  +G 
Sbjct: 238 EGKLVAIEDTGGQTPHPGRGA 258

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 54.9 bits (130), Expect = 1e-08
 Identities = 29/278 (10%), Positives = 63/278 (22%), Gaps = 35/278 (12%)

Query: 121 TLPLWDVERGECLNTLTRHTEPVYSVAFSPDGKFL-ASGSFDKCVHIWSARTGQLVHSYK 179
            + + DV   +   T+   + P      SPDG  +  + +    V I    T  ++ +  
Sbjct: 13  NISVIDVTSNKVTATIPVGSNP-MGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVP 71

Query: 180 GTGGIFEVCWNSRGTPPNPPESMEVDASIEIPQS-KATKLIGHESEVFICAWNPVKDFLA 238
                  V  +  G             S+    S      +         A +P    L 
Sbjct: 72  AGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLY 131

Query: 239 SGSGDSTARIWD------------------------------MTDSTKKDPKELQIVLRH 268
             +                                       + +        +  V   
Sbjct: 132 VTNNGDKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNS 191

Query: 269 CISKGGTEVPSNKDVTSLDWNNNGSFLATGSYDGYARIWTSDGSLKSTLGQHKGPIFALK 328
            I     E   +    + +            ++  + I T    + + +     P   + 
Sbjct: 192 VIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGPDP-AGIA 250

Query: 329 WNKRGNYIL-SAGVDKTTIIWDAASGQCEQQFSFHSAP 365
               G  +  +     T  + D A+       +    P
Sbjct: 251 VTPDGKKVYVALSFCNTVSVIDTATNTITATMAVGKNP 288

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 49.1 bits (115), Expect = 6e-07
 Identities = 12/63 (19%), Positives = 25/63 (39%), Gaps = 2/63 (3%)

Query: 118 HRLTLPLWDVERGECLNTLTRHTEPVYSVAFSPDGKFL-ASGSFDKCVHIWSARTGQLVH 176
           +  T+ + D    +    +    +P   +A +PDGK +  + SF   V +    T  +  
Sbjct: 222 YFNTVSMIDTGTNKITARIPVGPDP-AGIAVTPDGKKVYVALSFCNTVSVIDTATNTITA 280

Query: 177 SYK 179
           +  
Sbjct: 281 TMA 283

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 42.6 bits (98), Expect = 9e-05
 Identities = 33/300 (11%), Positives = 70/300 (23%), Gaps = 32/300 (10%)

Query: 239 SGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFL-AT 297
           + S      + D+T +                      +P   +      + +G+ +   
Sbjct: 7   ANSESDNISVIDVTSNKVTA-----------------TIPVGSNPMGAVISPDGTKVYVA 49

Query: 298 GSYDGYARIW-TSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCE 356
            ++     I  T+  ++ +T+     P             ++     T  + D  S    
Sbjct: 50  NAHSNDVSIIDTATNNVIATVPAGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVA 109

Query: 357 QQFSFHSAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQG 416
                  +P               +             K V +          I   P G
Sbjct: 110 GTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKGIAVTPDG 169

Query: 417 LLLASCSDDMTLKIWSLDKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFI----- 471
             +   + D           N V D          I  +P G +    N+   F      
Sbjct: 170 TKVYVANFDSMSISVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMI 229

Query: 472 ------LKSTLGQHKGPIFALKWNKRGNYIL-SAGVDKTTIIWDAASGQCEQQFSFHSAP 524
                 + + +     P   +     G  +  +     T  + D A+       +    P
Sbjct: 230 DTGTNKITARIPVGPDP-AGIAVTPDGKKVYVALSFCNTVSVIDTATNTITATMAVGKNP 288

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 39.5 bits (90), Expect = 8e-04
 Identities = 27/293 (9%), Positives = 71/293 (24%), Gaps = 22/293 (7%)

Query: 157 SGSFDKCVHIWSARTGQLVHSYKGTGGIFEVCWNSRGTPPNPPESMEVDASIEIPQSKAT 216
           + S    + +    + ++  +            +  GT       + V  +     S   
Sbjct: 7   ANSESDNISVIDVTSNKVTATIPVGSNPMGAVISPDGT------KVYVANA----HSNDV 56

Query: 217 KLIGHESEVFICAWNPVKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTE 276
            +I   +   I                                     V+    +     
Sbjct: 57  SIIDTATNNVIATVPAGSSP-----QGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGT 111

Query: 277 VPSNKDVTSLDWNNNGSFLATGSYDGYARI--WTSDGSLKSTLGQHKGPIFALKWNKRGN 334
           V + K    L  + +G  L   +          T   ++ +T+   + P           
Sbjct: 112 VKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGTK 171

Query: 335 YILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTSFASCSTDQHIHVCKLH-- 392
             ++     +  + D  +          +AP+        T     + D++ +   +   
Sbjct: 172 VYVANFDSMSISVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDT 231

Query: 393 -SDKPVKSFEGHTNEVNAIKWDPQG-LLLASCSDDMTLKIWSLDKDNCVHDLQ 443
            ++K          +   I   P G  +  + S   T+ +     +     + 
Sbjct: 232 GTNKITARIPVG-PDPAGIAVTPDGKKVYVALSFCNTVSVIDTATNTITATMA 283

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 51.5 bits (122), Expect = 1e-07
 Identities = 38/358 (10%), Positives = 89/358 (24%), Gaps = 49/358 (13%)

Query: 124 LWDVERGECLNTLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQL--VHSYKGT 181
           L D +  + +  +       +    S  G++L     D  + +      +   V   K  
Sbjct: 46  LVDGDSKKIVKVIDTGYAV-HISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIG 104

Query: 182 GGIFEVCWNSRGTPPNPPESMEVDASIEIPQSKATKLIGHESEVFICAWNPVKDFLASGS 241
                V  +      +           +        L   +           + +     
Sbjct: 105 IEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPR 164

Query: 242 GDSTARIWDMTD---STKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFLATG 298
             +     +  +   + K+  K L +  +   +   T + +   +    W+++  +  T 
Sbjct: 165 VAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLADGGWDSSHRYFMTA 224

Query: 299 SYDGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQ 358
           + +                            +K         V KT      A+    + 
Sbjct: 225 ANNSNKVAV--------------------IDSKDRRLSALVDVGKTPHPGRGANFVHPKY 264

Query: 359 FSFHSAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLL 418
               S   L      + S        H      ++ K V   +G       IK  P+   
Sbjct: 265 GPVWSTSHL---GDGSISLIGTDPKNH----PQYAWKKVAELQGQGGGSLFIKTHPKSSH 317

Query: 419 LA-------SCSDDMTLKIWSLDKDNCVH---------DLQAHNKEIYTIKWSPTGPE 460
           L              ++ ++ L   +  +         DL    K +   +++  G E
Sbjct: 318 LYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDE 375

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 49.6 bits (117), Expect = 6e-07
 Identities = 40/383 (10%), Positives = 90/383 (23%), Gaps = 39/383 (10%)

Query: 229 AWNPVKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDW 288
             +    F  +        + D                          + +   V     
Sbjct: 27  DLDLPNLFSVTLRDAGQIALVDGDSKKIVK-----------------VIDTGYAVHISRM 69

Query: 289 NNNGSFLATGSYDGYARIW---TSDGSLKSTLGQHKGP---IFALKWNKRGNYILSAGVD 342
           + +G +L     D    +      + +  + +           +        Y ++    
Sbjct: 70  SASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYW 129

Query: 343 KTTIIWDAASGQCEQQFSFHSAPALD---VDWQSNTSFASCSTDQHIHVCKLHSDKPVKS 399
                         +Q        +D      +   +    S +    +  +     V  
Sbjct: 130 PPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLL 189

Query: 400 FEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHDLQAHNKEIYTIKWSPTGP 459
                 +   +        LA    D + + +    +N        +K+         G 
Sbjct: 190 VNYKDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVG- 248

Query: 460 ETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAA-----SGQC 514
           +T +P     F+         GP+++      G+  L     K    +         GQ 
Sbjct: 249 KTPHPGRGANFV-----HPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQG 303

Query: 515 EQQFSFHSAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEGHTTGQLVHSYKGT 574
                  + P     +   T        Q + V  L +             +     +G 
Sbjct: 304 GGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPI--AEWADLGEGA 361

Query: 575 GGIFEVCWNSRGDKVGASASDGS 597
             + +  +N RGD+V  S  +G 
Sbjct: 362 KRVVQPEYNKRGDEVWFSVWNGK 384

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 37.2 bits (85), Expect = 0.004
 Identities = 12/140 (8%), Positives = 33/140 (23%), Gaps = 8/140 (5%)

Query: 326 ALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAP-ALDVDWQSNTSFASCSTDQ 384
               +    + ++        + D  S +  +      A     +             D 
Sbjct: 25  LNDLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYAVHISRMSASGRY-LLVIGRDA 83

Query: 385 HIHVCKLHSDKP-----VKSFEGHTNEVNAIKWDPQG-LLLASCSDDMTLKIWSLDKDNC 438
            I +  L + +P     +K      +  ++     +    +A         I   +    
Sbjct: 84  RIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEP 143

Query: 439 VHDLQAHNKEIYTIKWSPTG 458
              +      + T  + P  
Sbjct: 144 KQIVSTRGMTVDTQTYHPEP 163

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} Length = 441

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

 Score = 44.9 bits (106), Expect = 2e-05
 Identities = 39/326 (11%), Positives = 86/326 (26%), Gaps = 59/326 (18%)

Query: 133 LNTLTRHTEPVYSVAFSPDGKFL-ASGSFDKCVHIWSARTGQLVHSYKGTGGIFEVCWNS 191
           LN    H           DGK+L  +   +  V                           
Sbjct: 65  LNGDCHHPHISM-TDGRYDGKYLFINDKANTRVARIRLDI-------------------- 103

Query: 192 RGTPPNPPESMEVDASIEIPQSKATKLIGHESEVFICAWNPVKDFLASGSGDSTARIWDM 251
                     M+ D    IP  +A     H   +      P  +++   +     +  D 
Sbjct: 104 ----------MKTDKITHIPNVQAI----HGLRLQK---VPKTNYVFCNAEFVIPQPNDG 146

Query: 252 TDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFLATGSYDG--YARIWTS 309
           TD +  +   +   +         +V  + ++ + D +  G +  +  Y+      +  +
Sbjct: 147 TDFSLDNSYTMFTAIDAETMDVAWQVIVDGNLDNTDADYTGKYATSTCYNSERAVDLAGT 206

Query: 310 DGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAP-ALD 368
             + +  +             K GN+       K  ++      +  +       P  L+
Sbjct: 207 MRNDRDWVVVFNVER-IAAAVKAGNFKTIGD-SKVPVVDGRGESEFTRYIPVPKNPHGLN 264

Query: 369 VDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIK-------------WDPQ 415
                    A+      + V  +  DK    FE      + I              +D +
Sbjct: 265 TSPDGKYFIANGKLSPTVSVIAI--DKLDDLFEDKIELRDTIVAEPELGLGPLHTTFDGR 322

Query: 416 GLLLASCSDDMTLKIWSLDKDNCVHD 441
           G    +   D  +  W++      ++
Sbjct: 323 GNAYTTLFIDSQVCKWNIADAIKHYN 348

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Length = 333

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

 Score = 44.1 bits (102), Expect = 3e-05
 Identities = 33/321 (10%), Positives = 72/321 (22%), Gaps = 36/321 (11%)

Query: 124 LWDVERGECLNTLTR--HTEPVYSVAFSPDGKFL-ASGSFDKCVHIWSARTGQLVHSYKG 180
           +W++     L           V  +  SPD ++L      +  V  +             
Sbjct: 18  VWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDD------- 70

Query: 181 TGGIFEVCWNSRGTPPNPPESMEVDASIEIPQSKATKLIGHESEVFICAWNPVKDFLASG 240
             G       S    P     +  D   +     +                     +  G
Sbjct: 71  --GALTFAAESAL--PGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEG 126

Query: 241 SGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFLATGSY 300
                +      + T   P   Q  +          + +            G        
Sbjct: 127 LDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHP 186

Query: 301 DGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFS 360
           +       ++ +    + + K P   ++  +  + +     D                  
Sbjct: 187 NEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIH---------- 236

Query: 361 FHSAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEGHT---NEVNAIKWDPQG- 416
                   +       +A   T   I V  +  D  V S EG      +      D  G 
Sbjct: 237 --------ITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGK 288

Query: 417 LLLASCSDDMTLKIWSLDKDN 437
            L+A+      + ++ +  + 
Sbjct: 289 YLIAAGQKSHHISVYEIVGEQ 309

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} Length = 470

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 39.7 bits (91), Expect = 0.001
 Identities = 55/412 (13%), Positives = 113/412 (27%), Gaps = 57/412 (13%)

Query: 124 LWDVERGECLNTLTRHT-----EPVYSVAFSPDGKFLASG---------SFDKCVHIWSA 169
           +++ E G     L   T       +   + SPDG+F+            S+     I+  
Sbjct: 40  VFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDL 99

Query: 170 RTGQLVHSYKGTGGIFEVCW------------------NSRGTPPNPPESMEVDASIEIP 211
              QL+   +       V W                       P         +  I   
Sbjct: 100 NKRQLITEERIPNNTQWVTWSPVGHKLAYVWNNDIYVKIEPNLPSYRITWTGKEDIIYNG 159

Query: 212 QSKATKLIGHESEVFICAWNPVKDFLASGSGDSTA-RIWDMTDSTKKDPKELQIVLRHCI 270
            +         S      W+P   FLA    + T   + + +  + +  +  + V     
Sbjct: 160 ITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYP 219

Query: 271 SKGGTEVPSNKDVTSLDWNNNGSFLATGSYDGYARIWTSDGSLKSTL--GQHKGPIFALK 328
             G         V + D  ++ +   +      A +   D  L       Q +  +  L+
Sbjct: 220 KAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLR 279

Query: 329 WNKRGNYILSAGVDKTTIIWDAASGQCEQQFSF--------HSAPALDVDWQSNTSFASC 380
             +  + +     D+++  W+    +   + S          S P   +D  S     S 
Sbjct: 280 RIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISN 339

Query: 381 -STDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMT--------LKIW 431
               +HI   ++         +G    +         L   S              +++ 
Sbjct: 340 EEGYRHICYFQIDKKDCTFITKGTWEVIGIEALTSDYLYYISNEYKGMPGGRNLYKIQLS 399

Query: 432 SLDKDNCV-HDLQAHNKEIYTIKWSPTGP----ETSNPNMSLIFILKSTLGQ 478
              K  C+  +L     + Y++ +S          S P + L  +  S   +
Sbjct: 400 DYTKVTCLSCELNPERCQYYSVSFSKEAKYYQLRCSGPGLPLYTLHSSVNDK 451

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} Length = 269

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 37.1 bits (84), Expect = 0.004
 Identities = 32/234 (13%), Positives = 65/234 (27%), Gaps = 40/234 (17%)

Query: 135 TLTRHTEPVYSVAFSPDGKFLASGSFD----------------KCVHIWSARTGQLVHSY 178
            + R  +P+ S A+SPDG  LA  +F+                + V  +    G    S 
Sbjct: 33  VVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSP 92

Query: 179 KGTGGIFEVCWNSRGTPPNPPESMEVDASIEIPQSKATKL-------------------- 218
            G+   F +             +      +   +S  T+                     
Sbjct: 93  DGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQ 152

Query: 219 IGHESEVFICAWNPVKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVP 278
           +   +           +   +   D ++    M   +    ++         + G   + 
Sbjct: 153 VYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLA-TGGVQVLS 211

Query: 279 SNKDVTSLDWNNNGSFLATGSYDG---YARIWTSDGSLKSTLGQHKGPIFALKW 329
           S     +     NG+ +   S  G      + ++DG  K+ L    G +    W
Sbjct: 212 STFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARLPATDGQVKFPAW 265

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	602
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	100.0
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	100.0
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	100.0
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	100.0
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.97
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.97
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.97
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.97
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.97
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.97
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.97
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.96
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.95
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.93
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.93
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.93
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.92
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.9
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.9
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.9
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.85
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.84
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.83
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.82
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.8
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.71
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.71
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.7
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.66
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.65
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.57
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	99.24
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	99.23
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.21
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	99.2
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	99.2
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.2
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	99.2
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.19
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	99.16
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	99.16
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	99.14
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.14
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	99.08
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	99.07
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	99.0
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.91
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.67
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	98.65
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.61
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	98.42
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	98.23
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	97.92
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	97.91
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	97.87
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	97.85
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	97.81
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	97.79
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	97.76
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	97.65
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	97.65
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	97.55
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	97.55
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	97.54
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	97.53
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	97.51
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	97.36
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	97.26
d1uuja_	76	Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-te	97.03
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	96.65
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	96.59
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	96.47
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	96.45
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	96.41
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	95.39
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	94.93
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	94.71
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	94.69
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	94.43
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	93.03
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	92.68
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	92.16
d2hu7a1	313	Acylamino-acid-releasing enzyme, N-terminal donain	90.0
d1jtdb_	273	beta-lactamase inhibitor protein-II, BLIP-II {Stre	88.49
d2hu7a1	313	Acylamino-acid-releasing enzyme, N-terminal donain	87.92
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	86.31
d1jtdb_	273	beta-lactamase inhibitor protein-II, BLIP-II {Stre	85.36

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.2e-43  Score=336.37  Aligned_cols=292  Identities=21%  Similarity=0.326  Sum_probs=243.9

Q ss_pred             ceeeeeeeccCCceEEEEECCCCCeEEEeeCCceEEEEecCCceeEEEeeccCceEEEEeCCCCCCCCCCCCcccccccc
Q psy12697        130 GECLNTLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKGTGGIFEVCWNSRGTPPNPPESMEVDASIE  209 (602)
Q Consensus       130 ~~~~~~l~~h~~~V~~~~~s~d~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (602)
                      .+.++++ +|...|+|++|+|+|++||||+ ||.|+|||+.++.....+.                              
T Consensus        42 ~~~~~~~-~H~~~V~~v~fs~~g~~latg~-dg~V~iWd~~~~~~~~~~~------------------------------   89 (337)
T d1gxra_          42 ARQINTL-NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVS------------------------------   89 (337)
T ss_dssp             EEEEEEE-CCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSE------------------------------
T ss_pred             ceEEEEC-CCCCcEEEEEECCCCCEEEEEE-CCEEEEEEccCCcccceeE------------------------------
Confidence            3556666 7999999999999999999997 8999999998764321110                              


Q ss_pred             ccCCcceEeeCCCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEeeC
Q psy12697        210 IPQSKATKLIGHESEVFICAWNPVKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWN  289 (602)
Q Consensus       210 ~~~~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  289 (602)
                           .....+|...|.+++|+|++++|++++.||.|++||+.......      ..        ....+...+.+++|+
T Consensus        90 -----~~~~~~h~~~I~~v~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~------~~--------~~~~~~~~v~~~~~~  150 (337)
T d1gxra_          90 -----QLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRI------KA--------ELTSSAPACYALAIS  150 (337)
T ss_dssp             -----EEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EE------EE--------EEECSSSCEEEEEEC
T ss_pred             -----EeeecCCCCcEEEEEEcCCCCEEEEeeccccccccccccccccc------cc--------ccccccccccccccc
Confidence                 13345799999999999999999999999999999987654311      00        112346789999999


Q ss_pred             CCCCeEEEEeCCCeEEEEcCC-CcceeecccccCCeEEEEEccCCCEEEEEecCCcEEEEeCCCCceeEEeeeccCCeee
Q psy12697        290 NNGSFLATGSYDGYARIWTSD-GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALD  368 (602)
Q Consensus       290 ~~~~~l~~~~~dg~i~i~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~  368 (602)
                      |++.++++++.++.|++|++. +........|...|.+++|+++++.+++++.|+.+++||+++++.+..+         
T Consensus       151 ~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~~~~~~~d~~v~i~d~~~~~~~~~~---------  221 (337)
T d1gxra_         151 PDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQH---------  221 (337)
T ss_dssp             TTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE---------
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccceeeccc---------
Confidence            999999999999999999986 5566677789999999999999999999999999999998876543322         


Q ss_pred             eeccCCCeEEEeeCCCeEEEEEcCCCceeeEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeeeEeecccccc
Q psy12697        369 VDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHDLQAHNKE  448 (602)
Q Consensus       369 ~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~  448 (602)
                                                       .|...|.+++|+|++++|++++.|+.|++||+++++.... .     
T Consensus       222 ---------------------------------~~~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-~-----  262 (337)
T d1gxra_         222 ---------------------------------DFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQL-H-----  262 (337)
T ss_dssp             ---------------------------------ECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEEE-C-----
T ss_pred             ---------------------------------ccccceEEEEEcccccccceeccccccccccccccccccc-c-----
Confidence                                             2566789999999999999999999999999987664322 1     


Q ss_pred             EEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeeecccCCCeeEe
Q psy12697        449 IYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDV  528 (602)
Q Consensus       449 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~  528 (602)
                                                   .|...|.+++|+|++++|++++.||.|++||+.+++.+..+. |...|.++
T Consensus       263 -----------------------------~~~~~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~-~~~~v~~~  312 (337)
T d1gxra_         263 -----------------------------LHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK-ESSSVLSC  312 (337)
T ss_dssp             -----------------------------CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE-CSSCEEEE
T ss_pred             -----------------------------ccccccceEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEcc-CCCCEEEE
Confidence                                         366778888888899999999999999999999999988766 78899999


Q ss_pred             eecCCc-eEEEeeCCCcEEEeec
Q psy12697        529 DWQSNT-SFASCSTDQHIHVCKL  550 (602)
Q Consensus       529 ~~s~~~-~l~~~~~d~~i~iw~~  550 (602)
                      +|+|++ +|++|+.||.|+|||+
T Consensus       313 ~~s~d~~~l~t~s~D~~I~vWdl  335 (337)
T d1gxra_         313 DISVDDKYIVTGSGDKKATVYEV  335 (337)
T ss_dssp             EECTTSCEEEEEETTSCEEEEEE
T ss_pred             EEeCCCCEEEEEeCCCeEEEEEE
Confidence            999999 9999999999999996

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.6e-42  Score=328.30  Aligned_cols=314  Identities=25%  Similarity=0.422  Sum_probs=263.3

Q ss_pred             eeecccceeeeeeeccCCceEEEEECCCCCeEEEeeCCceEEEEecCCceeEEEeeccCceEEEEeCCCCCCCCCCCCcc
Q psy12697        124 LWDVERGECLNTLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKGTGGIFEVCWNSRGTPPNPPESME  203 (602)
Q Consensus       124 vwd~~~~~~~~~l~~h~~~V~~~~~s~d~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (602)
                      .|.+ .....++|+||+++|++++|+|++++||||+.||+|+|||+.+++.+.                           
T Consensus         2 ~w~p-~~~~~~~L~GH~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~~---------------------------   53 (317)
T d1vyhc1           2 EWIP-RPPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFER---------------------------   53 (317)
T ss_dssp             CCCC-CSSCSCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCE---------------------------
T ss_pred             ccCC-CCCccEEEcCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCEEE---------------------------
Confidence            4543 344567899999999999999999999999999999999999988764                           


Q ss_pred             ccccccccCCcceEeeCCCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCce
Q psy12697        204 VDASIEIPQSKATKLIGHESEVFICAWNPVKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDV  283 (602)
Q Consensus       204 ~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  283 (602)
                                   .+.+|...|.+++|+|++.+++++..++.+.+|+........                ....+...+
T Consensus        54 -------------~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~  104 (317)
T d1vyhc1          54 -------------TLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIR----------------TMHGHDHNV  104 (317)
T ss_dssp             -------------EECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEE----------------CCCCCSSCE
T ss_pred             -------------EEeCCCCcEEEEeeeccccccccccccccccccccccccccc----------------ccccccccc
Confidence                         455799999999999999999999999999999987654321                112346789


Q ss_pred             eEEeeCCCCCeEEEEeCCCeEEEEcCC-CcceeecccccCCeEEEEEccCCCEEEEEecCCcEEEEeCCCCceeEEeeec
Q psy12697        284 TSLDWNNNGSFLATGSYDGYARIWTSD-GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFH  362 (602)
Q Consensus       284 ~~~~~~~~~~~l~~~~~dg~i~i~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~  362 (602)
                      .++.|+|+++.+++++.|+.+++|++. +.....+..|...+.+++|+|++++|++++.|+.+++|+..+++....+..+
T Consensus       105 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~  184 (317)
T d1vyhc1         105 SSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREH  184 (317)
T ss_dssp             EEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCC
T ss_pred             eeeeccCCCceEEeeccCcceeEeecccceeeeEEccCCCcceeeecccCCCEEEEEeCCCeEEEEeeccceeeEEEecC
Confidence            999999999999999999999999986 5677788889999999999999999999999999999999999999999888


Q ss_pred             cCCeeeeeccCCCeEEEeeCCCeEEEEEcCCCceeeEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeeeEee
Q psy12697        363 SAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHDL  442 (602)
Q Consensus       363 ~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~  442 (602)
                      ...+..+.+.++.......                     .............+.++++++.|+.|++||+++++++.++
T Consensus       185 ~~~i~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~  243 (317)
T d1vyhc1         185 RHVVECISWAPESSYSSIS---------------------EATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTL  243 (317)
T ss_dssp             SSCEEEEEECCSCGGGGGG---------------------GCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEE
T ss_pred             CCCceEEEEeeccccceee---------------------ccccceeeeeccCCceeEeccCCCEEEEEECCCCcEEEEE
Confidence            8888888887764321111                     1112223344557789999999999999999999888877


Q ss_pred             ccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeeecccC
Q psy12697        443 QAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHS  522 (602)
Q Consensus       443 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~  522 (602)
                      ..|                                  ...|.+++|+|++++|++++.||.|++||+.+++++..+.+|.
T Consensus       244 ~~~----------------------------------~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~  289 (317)
T d1vyhc1         244 VGH----------------------------------DNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHE  289 (317)
T ss_dssp             ECC----------------------------------SSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCS
T ss_pred             eCC----------------------------------CCCEEEEEECCCCCEEEEEECCCeEEEEECCCCcEEEEEcCCC
Confidence            654                                  4456666677788999999999999999999999999999999


Q ss_pred             CCeeEeeecCCc-eEEEeeCCCcEEEee
Q psy12697        523 APALDVDWQSNT-SFASCSTDQHIHVCK  549 (602)
Q Consensus       523 ~~v~~~~~s~~~-~l~~~~~d~~i~iw~  549 (602)
                      ++|++++|+|++ +|++|+.||+|+|||
T Consensus       290 ~~V~~~~~s~~~~~l~s~s~Dg~i~iWd  317 (317)
T d1vyhc1         290 HFVTSLDFHKTAPYVVTGSVDQTVKVWE  317 (317)
T ss_dssp             SCEEEEEECSSSSCEEEEETTSEEEEEC
T ss_pred             CCEEEEEEcCCCCEEEEEeCCCeEEEeC
Confidence            999999999999 999999999999997

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.4e-42  Score=337.67  Aligned_cols=339  Identities=24%  Similarity=0.354  Sum_probs=253.5

Q ss_pred             eccceeeeeccccee----eeeeeccCCceEEEEECCCCCeEEEeeCCceEEEEecCCceeEEEeeccCceEEEEeCCCC
Q psy12697        118 HRLTLPLWDVERGEC----LNTLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKGTGGIFEVCWNSRG  193 (602)
Q Consensus       118 ~~~~i~vwd~~~~~~----~~~l~~h~~~V~~~~~s~d~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  193 (602)
                      .++...+|+....+.    +....+|++.|+|++|||||++||+|+ |++|+|||+.+++.+..+........       
T Consensus        36 ~~~~~~~~~~~~~~~~~~~l~~~~~H~~~V~~l~fs~dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~-------  107 (388)
T d1erja_          36 TNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANK-------  107 (388)
T ss_dssp             CSSCEEEECTTSCCCEEEEEEEEEECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-------------
T ss_pred             CCCcEEEeCCCCCcceeeeeEeeCCCCCcEEEEEECCCCCEEEEEe-CCeEEEEEecccceEeeecccccccc-------
Confidence            345677898765433    233447999999999999999999987 89999999999999887764322110       


Q ss_pred             CCCCCCCCccccccccccCCcceEeeCCCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCccceEEEEEEecCC
Q psy12697        194 TPPNPPESMEVDASIEIPQSKATKLIGHESEVFICAWNPVKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKG  273 (602)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~  273 (602)
                                     ...........+|...|.+++|+|++++|++|+.||.|++|+...++...               
T Consensus       108 ---------------~~~~~~~~~~~~~~~~V~~l~~s~~~~~l~s~~~dg~v~i~~~~~~~~~~---------------  157 (388)
T d1erja_         108 ---------------DPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVM---------------  157 (388)
T ss_dssp             --------------------------CCCCBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEE---------------
T ss_pred             ---------------cccccccccccCCCCCEEEEEECCCCCcceeccccccccccccccccccc---------------
Confidence                           00011113345789999999999999999999999999999987654311               


Q ss_pred             CcccCCCCceeEEeeCCCCCeEEEEeCCCeEEEEcCCCcceeecccccCCeEEEEEc-cCCCEEEEEecCCcEEEEeCCC
Q psy12697        274 GTEVPSNKDVTSLDWNNNGSFLATGSYDGYARIWTSDGSLKSTLGQHKGPIFALKWN-KRGNYILSAGVDKTTIIWDAAS  352 (602)
Q Consensus       274 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~l~~~~~dg~i~~wd~~~  352 (602)
                       ....|...|.++++++++..+++++.++.+++||...........+.....++.+. +++++|++++.||.|++||..+
T Consensus       158 -~~~~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~  236 (388)
T d1erja_         158 -ILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSET  236 (388)
T ss_dssp             -EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTT
T ss_pred             -ccccccccccccccccccccccccccceeeeeeeccccccccccccccccccccccCCCCCeEEEEcCCCeEEEeeccc
Confidence             11235688999999999999999999999999998865554444455555555555 4788999999999999999998


Q ss_pred             CceeEEeeeccCCeeeeeccCCCeEEEeeCCCeEEEEEcCCCceeeEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEe
Q psy12697        353 GQCEQQFSFHSAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWS  432 (602)
Q Consensus       353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd  432 (602)
                      +.....+..                                  ......+|...|.+++|+|++++|++++.||.|++||
T Consensus       237 ~~~~~~~~~----------------------------------~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd  282 (388)
T d1erja_         237 GFLVERLDS----------------------------------ENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWN  282 (388)
T ss_dssp             CCEEEEEC----------------------------------------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred             Cccceeecc----------------------------------ccccccCCCCCEEEEEECCCCCEEEEEECCCcEEEEe
Confidence            876654431                                  1123456888999999999999999999999999999


Q ss_pred             CCCCeeeEeeccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCC
Q psy12697        433 LDKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASG  512 (602)
Q Consensus       433 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~~~~  512 (602)
                      ++++.............                      .......|...|.+++|+|++++|++|+.||.|++||+.++
T Consensus       283 ~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~  340 (388)
T d1erja_         283 LQNANNKSDSKTPNSGT----------------------CEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSG  340 (388)
T ss_dssp             C---------------C----------------------EEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTC
T ss_pred             ccCCccccccccccccc----------------------eeeecccccceEEEEEECCCCCEEEEEeCCCEEEEEECCCC
Confidence            98776554433222111                      11223457889999999999999999999999999999999


Q ss_pred             ceeeeecccCCCeeEee------ecCCc-eEEEeeCCCcEEEeecC
Q psy12697        513 QCEQQFSFHSAPALDVD------WQSNT-SFASCSTDQHIHVCKLH  551 (602)
Q Consensus       513 ~~~~~~~~~~~~v~~~~------~s~~~-~l~~~~~d~~i~iw~~~  551 (602)
                      +++..+.+|.+.|++++      |+|++ +|++|+.||+|+||+++
T Consensus       341 ~~~~~l~~H~~~V~~~~~~~~~~~spd~~~l~s~s~Dg~I~iW~~~  386 (388)
T d1erja_         341 NPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYK  386 (388)
T ss_dssp             CEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEE
T ss_pred             cEEEEEeCCCCCEEEEEEecCcccCCCCCEEEEEeCCCEEEEEeee
Confidence            99999999999999886      57788 99999999999999973

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=3.3e-40  Score=310.30  Aligned_cols=289  Identities=21%  Similarity=0.341  Sum_probs=243.7

Q ss_pred             cCCceEEEEECCCCCeEEEeeCCceEEEEecCCceeEEEeeccCceEEEEeCCCCCCCCCCCCccccccccccCCcceEe
Q psy12697        139 HTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKGTGGIFEVCWNSRGTPPNPPESMEVDASIEIPQSKATKL  218 (602)
Q Consensus       139 h~~~V~~~~~s~d~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  218 (602)
                      +++.+.+++++|+|+.||.++ ++.|.+||+.+++..                                        ..+
T Consensus        16 ~r~~~~~~a~~~~g~~l~~~~-~~~v~i~~~~~~~~~----------------------------------------~~~   54 (311)
T d1nr0a1          16 ARGTAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDT----------------------------------------EIY   54 (311)
T ss_dssp             CTTCCCCCEECTTSSEEEEEE-TTEEEEEETTCSSCC----------------------------------------EEE
T ss_pred             CCCCeEEEEEcCCCCEEEEEe-CCEEEEEECCCCcee----------------------------------------EEE
Confidence            455677899999999999885 667999999887665                                        345


Q ss_pred             eCCCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEeeCCCCCeEEEE
Q psy12697        219 IGHESEVFICAWNPVKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFLATG  298 (602)
Q Consensus       219 ~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~  298 (602)
                      .+|...|++++|+|++++|++|+.||+|++||+.+....                                         
T Consensus        55 ~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~-----------------------------------------   93 (311)
T d1nr0a1          55 TEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHI-----------------------------------------   93 (311)
T ss_dssp             CCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCC-----------------------------------------
T ss_pred             cCCCCCEEEEEEeCCCCeEeccccCceEeeeeeeccccc-----------------------------------------
Confidence            679999999999999999999999999999998765321                                         


Q ss_pred             eCCCeEEEEcCCCcceeecccccCCeEEEEEccCCCEEEEEec--CCcEEEEeCCCCceeEEeeeccCCeeeeeccCCC-
Q psy12697        299 SYDGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGV--DKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNT-  375 (602)
Q Consensus       299 ~~dg~i~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~--dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~-  375 (602)
                                    ....+..|..+|.+++|+|++++|++++.  +..+++|++.+++....+..|...+.+++|+|++ 
T Consensus        94 --------------~~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~~h~~~v~~v~~~~~~~  159 (311)
T d1nr0a1          94 --------------LKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRP  159 (311)
T ss_dssp             --------------EEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSS
T ss_pred             --------------cccccccccCccccccccccccccccccccccccccccccccccccccccccccccccccccccce
Confidence                          01123457788899999999998888875  4568999999999999999999999999999875 


Q ss_pred             -eEEEeeCCCeEEEEEcCCCceeeEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeeeEeeccccccEEEEEE
Q psy12697        376 -SFASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHDLQAHNKEIYTIKW  454 (602)
Q Consensus       376 -~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~  454 (602)
                       .+++|+.|+.|++||+++++....+..|...|++++|+|++++|++++.|+.|++||+.++.....+.....       
T Consensus       160 ~~l~sgs~d~~i~i~d~~~~~~~~~~~~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~-------  232 (311)
T d1nr0a1         160 FRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSL-------  232 (311)
T ss_dssp             CEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTS-------
T ss_pred             eeecccccccccccccccccccccccccccccccccccCcccccccccccccccccccccccccccccccccc-------
Confidence             477899999999999999999999999999999999999999999999999999999998887766643211       


Q ss_pred             CCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeeecccCC---CeeEeeec
Q psy12697        455 SPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSA---PALDVDWQ  531 (602)
Q Consensus       455 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~---~v~~~~~s  531 (602)
                                          ...+|...|++++|+|++++|++|+.||.|+|||+++++++.++..|..   .+.++.|+
T Consensus       233 --------------------~~~~h~~~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t~~~~~~l~~~~~~~~~~~~~~~~  292 (311)
T d1nr0a1         233 --------------------KNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWT  292 (311)
T ss_dssp             --------------------SSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEEC
T ss_pred             --------------------ccccccccccccccCCCCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCccceEEEEEec
Confidence                                2346889999999999999999999999999999999999998887654   34455555


Q ss_pred             CCceEEEeeCCCcEEEeecC
Q psy12697        532 SNTSFASCSTDQHIHVCKLH  551 (602)
Q Consensus       532 ~~~~l~~~~~d~~i~iw~~~  551 (602)
                      ++ .|++++.||.|++||.+
T Consensus       293 ~~-~l~s~s~dG~i~~wd~d  311 (311)
T d1nr0a1         293 KQ-ALVSISANGFINFVNPE  311 (311)
T ss_dssp             SS-CEEEEETTCCEEEEETT
T ss_pred             CC-EEEEEECCCEEEEEeCC
Confidence            44 78999999999999963

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.1e-39  Score=309.75  Aligned_cols=275  Identities=17%  Similarity=0.262  Sum_probs=240.1

Q ss_pred             CCCCceeEEeeCCCCCeEEEEeCCCeEEEEcCCCc------ceeecccccCCeEEEEEccCCCEEEEEecCCcEEEEeCC
Q psy12697        278 PSNKDVTSLDWNNNGSFLATGSYDGYARIWTSDGS------LKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAA  351 (602)
Q Consensus       278 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~  351 (602)
                      .|...|++++|+|+|++|++|+ ||.|++||+...      .......|.+.|.+++|+|++++|++++.||.|++||+.
T Consensus        49 ~H~~~V~~v~fs~~g~~latg~-dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~~dg~i~iwd~~  127 (337)
T d1gxra_          49 NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLA  127 (337)
T ss_dssp             CCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECC
T ss_pred             CCCCcEEEEEECCCCCEEEEEE-CCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCCCEEEEeeccccccccccc
Confidence            4678999999999999999987 899999997632      122345788999999999999999999999999999987


Q ss_pred             CC--ceeEEeeeccCCeeeeeccCCC-eEEEeeCCCeEEEEEcCCCceeeEeccCCCCeEEEEECCCCCEEEEEECCCeE
Q psy12697        352 SG--QCEQQFSFHSAPALDVDWQSNT-SFASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTL  428 (602)
Q Consensus       352 ~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i  428 (602)
                      ..  +....+..+...+..+.|++++ .+++++.++.+.+|++.+++......+|...|.+++|++++..+++++.|+.|
T Consensus       128 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~~~~~~~d~~v  207 (337)
T d1gxra_         128 APTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTV  207 (337)
T ss_dssp             CC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            54  4556677788899999999875 57788999999999999999999999999999999999999999999999999


Q ss_pred             EEEeCCCCeeeEeeccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCCCeEEEEe
Q psy12697        429 KIWSLDKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWD  508 (602)
Q Consensus       429 ~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd  508 (602)
                      ++||+++++.+..+.                                   +...|.+++|+|++++|++++.|+.+++||
T Consensus       208 ~i~d~~~~~~~~~~~-----------------------------------~~~~i~~l~~~~~~~~l~~~~~d~~i~i~d  252 (337)
T d1gxra_         208 RSWDLREGRQLQQHD-----------------------------------FTSQIFSLGYCPTGEWLAVGMESSNVEVLH  252 (337)
T ss_dssp             EEEETTTTEEEEEEE-----------------------------------CSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred             cccccccceeecccc-----------------------------------cccceEEEEEcccccccceecccccccccc
Confidence            999999987765542                                   456778888888999999999999999999


Q ss_pred             CCCCceeeeecccCCCeeEeeecCCc-eEEEeeCCCcEEEeecCCCCceeeeecccccceEEEEecCCcEEEEEECCCCC
Q psy12697        509 AASGQCEQQFSFHSAPALDVDWQSNT-SFASCSTDQHIHVCKLHSDKPVKSFEGHTTGQLVHSYKGTGGIFEVCWNSRGD  587 (602)
Q Consensus       509 ~~~~~~~~~~~~~~~~v~~~~~s~~~-~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~  587 (602)
                      +.+++... ...|...|++++|+|++ .|++++.||.|++||+.+++++..+            .+.+.|.+++|+||++
T Consensus       253 ~~~~~~~~-~~~~~~~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~~~~~~~------------~~~~~v~~~~~s~d~~  319 (337)
T d1gxra_         253 VNKPDKYQ-LHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS------------KESSSVLSCDISVDDK  319 (337)
T ss_dssp             TTSSCEEE-ECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE------------ECSSCEEEEEECTTSC
T ss_pred             cccccccc-ccccccccceEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEc------------cCCCCEEEEEEeCCCC
Confidence            99887654 45699999999999999 9999999999999998877665543            3347899999999999


Q ss_pred             eEEEeccCCeEEee
Q psy12697        588 KVGASASDGSVFKN  601 (602)
Q Consensus       588 ~l~~~~~dg~v~i~  601 (602)
                      +|++|+.||+|+|+
T Consensus       320 ~l~t~s~D~~I~vW  333 (337)
T d1gxra_         320 YIVTGSGDKKATVY  333 (337)
T ss_dssp             EEEEEETTSCEEEE
T ss_pred             EEEEEeCCCeEEEE
Confidence            99999999999885

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=5.7e-40  Score=310.67  Aligned_cols=300  Identities=23%  Similarity=0.399  Sum_probs=269.2

Q ss_pred             cCCCCceeEEeeCCCCCeEEEEeCCCeEEEEcCC-CcceeecccccCCeEEEEEccCCCEEEEEecCCcEEEEeCCCCce
Q psy12697        277 VPSNKDVTSLDWNNNGSFLATGSYDGYARIWTSD-GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQC  355 (602)
Q Consensus       277 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~  355 (602)
                      ..|.+.|++++|+|++++|++|+.||.|++||+. ++....+..|...|.+++|+|++.++++++.++.+.+|+....+.
T Consensus        14 ~GH~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   93 (317)
T d1vyhc1          14 SGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFEC   93 (317)
T ss_dssp             ECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCE
T ss_pred             cCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCcEEEEeeeccccccccccccccccccccccccc
Confidence            3578999999999999999999999999999976 677888899999999999999999999999999999999999998


Q ss_pred             eEEeeeccCCeeeeeccCC-CeEEEeeCCCeEEEEEcCCCceeeEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEeCC
Q psy12697        356 EQQFSFHSAPALDVDWQSN-TSFASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLD  434 (602)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~  434 (602)
                      ...+..+...+.++.+.++ ..+++++.|+.+.+||+++++.+..+.+|...+.+++|+|++++|++++.|+.|++|++.
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~~~~~~  173 (317)
T d1vyhc1          94 IRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVA  173 (317)
T ss_dssp             EECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred             ccccccccccceeeeccCCCceEEeeccCcceeEeecccceeeeEEccCCCcceeeecccCCCEEEEEeCCCeEEEEeec
Confidence            8888889999999999987 458899999999999999999999999999999999999999999999999999999999


Q ss_pred             CCeeeEeeccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCce
Q psy12697        435 KDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQC  514 (602)
Q Consensus       435 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~~~~~~  514 (602)
                      +++....+..+...+..+.++|+......              ..........+..++.++++++.|+.|++||+.++++
T Consensus       174 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~  239 (317)
T d1vyhc1         174 TKECKAELREHRHVVECISWAPESSYSSI--------------SEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMC  239 (317)
T ss_dssp             TCCEEEEECCCSSCEEEEEECCSCGGGGG--------------GGCCSCC-------CCEEEEEETTSEEEEEETTTTEE
T ss_pred             cceeeEEEecCCCCceEEEEeecccccee--------------eccccceeeeeccCCceeEeccCCCEEEEEECCCCcE
Confidence            99999999999999999999998653221              1122233344556788999999999999999999999


Q ss_pred             eeeecccCCCeeEeeecCCc-eEEEeeCCCcEEEeecCCCCceeeeecccccceEEEEecCCcEEEEEECCCCCeEEEec
Q psy12697        515 EQQFSFHSAPALDVDWQSNT-SFASCSTDQHIHVCKLHSDKPVKSFEGHTTGQLVHSYKGTGGIFEVCWNSRGDKVGASA  593 (602)
Q Consensus       515 ~~~~~~~~~~v~~~~~s~~~-~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~  593 (602)
                      +..+.+|...|.+++|+|++ +|++++.||.|++||+.+++++..+.+|.           ++|++++|+|++++|++|+
T Consensus       240 ~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~-----------~~V~~~~~s~~~~~l~s~s  308 (317)
T d1vyhc1         240 LMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHE-----------HFVTSLDFHKTAPYVVTGS  308 (317)
T ss_dssp             EEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCS-----------SCEEEEEECSSSSCEEEEE
T ss_pred             EEEEeCCCCCEEEEEECCCCCEEEEEECCCeEEEEECCCCcEEEEEcCCC-----------CCEEEEEEcCCCCEEEEEe
Confidence            99999999999999999999 99999999999999999999999888875           7799999999999999999


Q ss_pred             cCCeEEee
Q psy12697        594 SDGSVFKN  601 (602)
Q Consensus       594 ~dg~v~i~  601 (602)
                      .||+|+|+
T Consensus       309 ~Dg~i~iW  316 (317)
T d1vyhc1         309 VDQTVKVW  316 (317)
T ss_dssp             TTSEEEEE
T ss_pred             CCCeEEEe
Confidence            99999985

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=2.7e-39  Score=309.64  Aligned_cols=294  Identities=22%  Similarity=0.367  Sum_probs=248.1

Q ss_pred             ceeeeeeeccCCceEEEEECCCCCeEEEeeCCceEEEEecCCceeEEEeeccCceEEEEeCCCCCCCCCCCCcccccccc
Q psy12697        130 GECLNTLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKGTGGIFEVCWNSRGTPPNPPESMEVDASIE  209 (602)
Q Consensus       130 ~~~~~~l~~h~~~V~~~~~s~d~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (602)
                      .+..++|+||+++|++++|+|++++||||+.||+|+|||+.+++.+..                                
T Consensus        45 ~~~~~tL~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~~--------------------------------   92 (340)
T d1tbga_          45 MRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHA--------------------------------   92 (340)
T ss_dssp             CCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEE--------------------------------
T ss_pred             eeeeEEECCCCCCEEEEEECCCCCEEEEEECCCceeeeecccceeEEE--------------------------------
Confidence            356788999999999999999999999999999999999999988744                                


Q ss_pred             ccCCcceEeeCCCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEeeC
Q psy12697        210 IPQSKATKLIGHESEVFICAWNPVKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWN  289 (602)
Q Consensus       210 ~~~~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  289 (602)
                              +.+|...|.+++|+|+++++++++.|+.+++|+.........                              
T Consensus        93 --------~~~~~~~v~~v~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~------------------------------  134 (340)
T d1tbga_          93 --------IPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVR------------------------------  134 (340)
T ss_dssp             --------EECSCSCEEEEEECTTSSEEEEEETTCCEEEEESSSSCSCCC------------------------------
T ss_pred             --------EecccccEEeeEeeccceeeeeecccceeecccccccccccc------------------------------
Confidence                    456899999999999999999999999999999865432110                              


Q ss_pred             CCCCeEEEEeCCCeEEEEcCCCcceeecccccCCeEEEEEccCCCEEEEEecCCcEEEEeCCCCceeEEeeeccCCeeee
Q psy12697        290 NNGSFLATGSYDGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDV  369 (602)
Q Consensus       290 ~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~  369 (602)
                                             ....+..|.......... .+..+.....+.....+.................+...
T Consensus       135 -----------------------~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (340)
T d1tbga_         135 -----------------------VSRELAGHTGYLSCCRFL-DDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSL  190 (340)
T ss_dssp             -----------------------EEEEECCCSSCEEEEEEE-ETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEE
T ss_pred             -----------------------cceecccccccccccccc-cccccccccccccccccccccccccccccccceeEeee
Confidence                                   001122344434433333 34567777788888888888877777777777777777


Q ss_pred             eccCC-CeEEEeeCCCeEEEEEcCCCceeeEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeeeEeecccccc
Q psy12697        370 DWQSN-TSFASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHDLQAHNKE  448 (602)
Q Consensus       370 ~~~~~-~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~  448 (602)
                      .+.+. ..++++..|+.|++||+++++++..+.+|...|++++|+|++++|++|+.||.|++||++....+..+..    
T Consensus       191 ~~~~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~----  266 (340)
T d1tbga_         191 SLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSH----  266 (340)
T ss_dssp             EECTTSSEEEEEETTTEEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECC----
T ss_pred             ccccccceeEEeecCceEEEEECCCCcEEEEEeCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeeccccccccccc----
Confidence            77765 5578899999999999999999999999999999999999999999999999999999998776655432    


Q ss_pred             EEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeeecccCCCeeEe
Q psy12697        449 IYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDV  528 (602)
Q Consensus       449 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~  528 (602)
                                                  ..+...|.+++|+|++++|++|+.||.|++||+.+++++..+.+|.++|+++
T Consensus       267 ----------------------------~~~~~~i~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~H~~~V~~l  318 (340)
T d1tbga_         267 ----------------------------DNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCL  318 (340)
T ss_dssp             ----------------------------TTCCSCEEEEEECSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEE
T ss_pred             ----------------------------ccccCceEEEEECCCCCEEEEEECCCEEEEEECCCCcEEEEEcCCCCCEEEE
Confidence                                        1255678889999999999999999999999999999999999999999999


Q ss_pred             eecCCc-eEEEeeCCCcEEEee
Q psy12697        529 DWQSNT-SFASCSTDQHIHVCK  549 (602)
Q Consensus       529 ~~s~~~-~l~~~~~d~~i~iw~  549 (602)
                      +|+|++ +|++|+.||.|+|||
T Consensus       319 ~~s~d~~~l~s~s~Dg~v~iWd  340 (340)
T d1tbga_         319 GVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             EECTTSSCEEEEETTSCEEEEC
T ss_pred             EEeCCCCEEEEEccCCEEEEeC
Confidence            999999 999999999999997

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=9.9e-39  Score=311.88  Aligned_cols=305  Identities=17%  Similarity=0.270  Sum_probs=241.6

Q ss_pred             eCCCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEeeCCCCCeEEEE
Q psy12697        219 IGHESEVFICAWNPVKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFLATG  298 (602)
Q Consensus       219 ~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~  298 (602)
                      .+|.+.|++++|+|+|++|++|+ |+.|++||+.++.....                          +....        
T Consensus        59 ~~H~~~V~~l~fs~dg~~lasg~-d~~i~iW~~~~~~~~~~--------------------------~~~~~--------  103 (388)
T d1erja_          59 LDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVAR--------------------------LSDDS--------  103 (388)
T ss_dssp             EECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEE--------------------------ECC----------
T ss_pred             CCCCCcEEEEEECCCCCEEEEEe-CCeEEEEEecccceEee--------------------------ecccc--------
Confidence            46999999999999999999986 89999999987653210                          00000        


Q ss_pred             eCCCeEEEEcCCCcceeecccccCCeEEEEEccCCCEEEEEecCCcEEEEeCCCCceeEEeeeccCCeeeeeccCCC-eE
Q psy12697        299 SYDGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNT-SF  377 (602)
Q Consensus       299 ~~dg~i~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  377 (602)
                           ....+...........|...|.+++|+|++++|++++.||.|++||...++.......|...+.++.+.+++ .+
T Consensus       104 -----~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~~l~s~~~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~  178 (388)
T d1erja_         104 -----AANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKL  178 (388)
T ss_dssp             --------------------CCCCBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEE
T ss_pred             -----cccccccccccccccCCCCCEEEEEECCCCCcceecccccccccccccccccccccccccccccccccccccccc
Confidence                 000011111122334678889999999999999999999999999999999999999999999999998874 58


Q ss_pred             EEeeCCCeEEEEEcCCCceeeEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeeeEeeccccccEEEEEECCC
Q psy12697        378 ASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHDLQAHNKEIYTIKWSPT  457 (602)
Q Consensus       378 ~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~  457 (602)
                      ++++.++.+++||..+.........+...+....+.+++++|++++.||.|++||..++.....+....           
T Consensus       179 ~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~-----------  247 (388)
T d1erja_         179 VSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSEN-----------  247 (388)
T ss_dssp             EEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC--------------
T ss_pred             cccccceeeeeeeccccccccccccccccccccccCCCCCeEEEEcCCCeEEEeecccCccceeecccc-----------
Confidence            889999999999999988887777666555555555589999999999999999999888776654321           


Q ss_pred             CCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCce------------eeeecccCCCe
Q psy12697        458 GPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQC------------EQQFSFHSAPA  525 (602)
Q Consensus       458 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~~~~~~------------~~~~~~~~~~v  525 (602)
                                      ....+|...|.+++|+|++++|++++.||.|++||+.++..            ......|...|
T Consensus       248 ----------------~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  311 (388)
T d1erja_         248 ----------------ESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFV  311 (388)
T ss_dssp             -------------------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCE
T ss_pred             ----------------ccccCCCCCEEEEEECCCCCEEEEEECCCcEEEEeccCCccccccccccccceeeecccccceE
Confidence                            12345888999999999999999999999999999976543            34455688999


Q ss_pred             eEeeecCCc-eEEEeeCCCcEEEeecCCCCceeeeecccccceEEEEecCCcEEEEE------ECCCCCeEEEeccCCeE
Q psy12697        526 LDVDWQSNT-SFASCSTDQHIHVCKLHSDKPVKSFEGHTTGQLVHSYKGTGGIFEVC------WNSRGDKVGASASDGSV  598 (602)
Q Consensus       526 ~~~~~s~~~-~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~------~spdg~~l~~~~~dg~v  598 (602)
                      .+++|+|++ +|++|+.||.|++||+.+++++..+.+|.           +.|.+++      |+||+++||+|+.||+|
T Consensus       312 ~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~l~~H~-----------~~V~~~~~~~~~~~spd~~~l~s~s~Dg~I  380 (388)
T d1erja_         312 LSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHR-----------NSVISVAVANGSSLGPEYNVFATGSGDCKA  380 (388)
T ss_dssp             EEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCS-----------SCEEEEEECSSCTTCTTCEEEEEEETTSEE
T ss_pred             EEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEeCCC-----------CCEEEEEEecCcccCCCCCEEEEEeCCCEE
Confidence            999999999 99999999999999999999999998886           6677776      57899999999999999


Q ss_pred             Eee
Q psy12697        599 FKN  601 (602)
Q Consensus       599 ~i~  601 (602)
                      +|+
T Consensus       381 ~iW  383 (388)
T d1erja_         381 RIW  383 (388)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            985

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.8e-39  Score=312.57  Aligned_cols=320  Identities=21%  Similarity=0.343  Sum_probs=253.4

Q ss_pred             eeeeeccCCce-EEEEECCCCCeEEEeeCCceEEEEecCCceeEEEeeccCceEEEEeCCCCCCCCCCCCcccccccccc
Q psy12697        133 LNTLTRHTEPV-YSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKGTGGIFEVCWNSRGTPPNPPESMEVDASIEIP  211 (602)
Q Consensus       133 ~~~l~~h~~~V-~~~~~s~d~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (602)
                      ..+|+||.+.| +|++|  ++++||||+.||+|+|||+.+++++.                                   
T Consensus         5 ~~tL~GH~~~vitc~~~--~~~~l~tgs~Dg~i~vWd~~~~~~~~-----------------------------------   47 (355)
T d1nexb2           5 RTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLL-----------------------------------   47 (355)
T ss_dssp             EEEEECCSSSCEEEEEE--ETTEEEEEETTTEEEEEETTTTEEEE-----------------------------------
T ss_pred             cEEECCcCCCcEEEEEE--CCCEEEEEeCCCeEEEEECCCCcEEE-----------------------------------
Confidence            56799999886 56555  68899999999999999999998874                                   


Q ss_pred             CCcceEeeCCCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEeeCCC
Q psy12697        212 QSKATKLIGHESEVFICAWNPVKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNN  291 (602)
Q Consensus       212 ~~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  291 (602)
                           .+.+|.+.|.+++|+|+ .+|++++.|++|++|++..........              ............+.++
T Consensus        48 -----~l~~H~~~V~~l~~s~~-~~l~s~s~D~~i~iw~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~  107 (355)
T d1nexb2          48 -----QLSGHDGGVWALKYAHG-GILVSGSTDRTVRVWDIKKGCCTHVFE--------------GHNSTVRCLDIVEYKN  107 (355)
T ss_dssp             -----EEECCSSCEEEEEEETT-TEEEEEETTCCEEEEETTTTEEEEEEC--------------CCSSCEEEEEEEEETT
T ss_pred             -----EEECCCCCEEEEEEcCC-CEEEEEecccccccccccccccccccc--------------cccccccccccccccc
Confidence                 45679999999999985 589999999999999987654321100              0112234566778899


Q ss_pred             CCeEEEEeCCCeEEEEcCCCccee------------------------ecccccCCeEEEEEccCCCEEEEEecCCcEEE
Q psy12697        292 GSFLATGSYDGYARIWTSDGSLKS------------------------TLGQHKGPIFALKWNKRGNYILSAGVDKTTII  347 (602)
Q Consensus       292 ~~~l~~~~~dg~i~i~~~~~~~~~------------------------~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~  347 (602)
                      +..+++++.|+.|++|++......                        ....|...+.  .+.++++.++++..|+.+++
T Consensus       108 ~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~~~~~~~~~~~~~d~~i~~  185 (355)
T d1nexb2         108 IKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVR--TVSGHGNIVVSGSYDNTLIV  185 (355)
T ss_dssp             EEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEECCSSCEE--EEEEETTEEEEEETTSCEEE
T ss_pred             cceeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceeeeeeecccccc--ccccccceeeeecccceeee
Confidence            999999999999999997632111                        1112223333  34567889999999999999


Q ss_pred             EeCCCCceeEEeeeccCCeeeeeccCC-CeEEEeeCCCeEEEEEcCCCceeeEeccCCCCeEEEEECCCCCEEEEEECCC
Q psy12697        348 WDAASGQCEQQFSFHSAPALDVDWQSN-TSFASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDM  426 (602)
Q Consensus       348 wd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg  426 (602)
                      ||+.+++.+.....+...+.++.++++ ..+++++.|+.|++||..++..+..+.+|...|.++++++  ++|++++.||
T Consensus       186 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~~~--~~l~~~~~dg  263 (355)
T d1nexb2         186 WDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLSD--KFLVSAAADG  263 (355)
T ss_dssp             EETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTCCEEEEECCCSSCCCEEEECS--SEEEEECTTS
T ss_pred             eecccccceeeeeccccccccccccccceeeecccccceEEeeecccccccccccccccccccccccc--ceeeeeeccc
Confidence            999999999988888888999999886 5688899999999999999999999999999999999975  6999999999


Q ss_pred             eEEEEeCCCCeeeEeeccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEE-EEccCCCEEEEEeCCCeEE
Q psy12697        427 TLKIWSLDKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFAL-KWNKRGNYILSAGVDKTTI  505 (602)
Q Consensus       427 ~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i-~~s~~~~~l~s~~~dg~i~  505 (602)
                      .|++||+++.......                                    |...+.++ .++++++++++| .||.|+
T Consensus       264 ~i~iwd~~~~~~~~~~------------------------------------~~~~~~~~~~~~~~~~~l~~g-~d~~i~  306 (355)
T d1nexb2         264 SIRGWDANDYSRKFSY------------------------------------HHTNLSAITTFYVSDNILVSG-SENQFN  306 (355)
T ss_dssp             EEEEEETTTCCEEEEE------------------------------------ECTTCCCCCEEEECSSEEEEE-ETTEEE
T ss_pred             ccccccccccceeccc------------------------------------ccCCceEEEEEcCCCCEEEEE-eCCEEE
Confidence            9999999876543322                                    22223333 456677776665 589999


Q ss_pred             EEeCCCCceee-eecccCCCeeEeeecCCceEEEeeCCCcEEEeec
Q psy12697        506 IWDAASGQCEQ-QFSFHSAPALDVDWQSNTSFASCSTDQHIHVCKL  550 (602)
Q Consensus       506 iwd~~~~~~~~-~~~~~~~~v~~~~~s~~~~l~~~~~d~~i~iw~~  550 (602)
                      +||+++++++. .+.+|.++|.+++|+|+..+++++.||.++||.+
T Consensus       307 vwd~~tg~~~~~~~~~~~~~V~~v~~~~~~~~~~~s~dg~~~l~~~  352 (355)
T d1nexb2         307 IYNLRSGKLVHANILKDADQIWSVNFKGKTLVAAVEKDGQSFLEIL  352 (355)
T ss_dssp             EEETTTCCBCCSCTTTTCSEEEEEEEETTEEEEEEESSSCEEEEEE
T ss_pred             EEECCCCCEEEEEecCCCCCEEEEEEcCCeEEEEEECCCcEEEEEE
Confidence            99999999885 5678999999999999878888999999877653

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=7.5e-39  Score=300.65  Aligned_cols=293  Identities=13%  Similarity=0.192  Sum_probs=228.4

Q ss_pred             ceeeeeeeccCCceEEEEECCCCCeEEEeeCCceEEEEecCCceeEEEeeccCceEEEEeCCCCCCCCCCCCcccccccc
Q psy12697        130 GECLNTLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKGTGGIFEVCWNSRGTPPNPPESMEVDASIE  209 (602)
Q Consensus       130 ~~~~~~l~~h~~~V~~~~~s~d~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (602)
                      |+..+.+.||+++|++++|+||+++||||+.||+|++||+++++.+..+.                              
T Consensus         2 g~~~~~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~------------------------------   51 (299)
T d1nr0a2           2 GSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFP------------------------------   51 (299)
T ss_dssp             TEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSS------------------------------
T ss_pred             CccceEcCCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEc------------------------------
Confidence            57788999999999999999999999999999999999999988775432                              


Q ss_pred             ccCCcceEeeCCCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEeeC
Q psy12697        210 IPQSKATKLIGHESEVFICAWNPVKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWN  289 (602)
Q Consensus       210 ~~~~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  289 (602)
                               .+|...|.+++|+|++. +++++.|+.+++|+............             ...+...+.+++|+
T Consensus        52 ---------~~h~~~v~~v~~~~~g~-~~~~~~d~~v~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~s  108 (299)
T d1nr0a2          52 ---------DVHATMITGIKTTSKGD-LFTVSWDDHLKVVPAGGSGVDSSKAV-------------ANKLSSQPLGLAVS  108 (299)
T ss_dssp             ---------CSCSSCEEEEEECTTSC-EEEEETTTEEEEECSSSSSSCTTSCC-------------EEECSSCEEEEEEC
T ss_pred             ---------CCCCCcEEEEEeeccce-eecccceeeEEEeccCCccccccccc-------------cccccccccccccc
Confidence                     35889999999999987 55667899999999876543222111             11235678999999


Q ss_pred             CCCCeEEEEeCCCeEEEEcCCCcceeecccccCCeEEEEEccCCCEEEEEecCCcEEEEeCCCCceeEEeeeccCCeeee
Q psy12697        290 NNGSFLATGSYDGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDV  369 (602)
Q Consensus       290 ~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~  369 (602)
                      |+++.+++++ ++.+.+|+..... ..  .....+.+++|+|++++|++++.||.+++||+++++...            
T Consensus       109 ~~g~~~~~~~-~~~i~~~~~~~~~-~~--~~~~~~~~~~~s~~~~~l~~g~~dg~i~~~d~~~~~~~~------------  172 (299)
T d1nr0a2         109 ADGDIAVAAC-YKHIAIYSHGKLT-EV--PISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSE------------  172 (299)
T ss_dssp             TTSSCEEEEE-SSEEEEEETTEEE-EE--ECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEE------------
T ss_pred             cccccccccc-ccccccccccccc-cc--ccccccccccccccccccccccccccccccccccccccc------------
Confidence            9998777665 5689999854222 12  234567889999999999999999999999976554321            


Q ss_pred             eccCCCeEEEeeCCCeEEEEEcCCCceeeEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeeeEeeccccccE
Q psy12697        370 DWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHDLQAHNKEI  449 (602)
Q Consensus       370 ~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i  449 (602)
                                                  .....|...|++++|+|++++|++++.|+.|++||+.++.......      
T Consensus       173 ----------------------------~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~------  218 (299)
T d1nr0a2         173 ----------------------------VKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTN------  218 (299)
T ss_dssp             ----------------------------EEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCC------
T ss_pred             ----------------------------cccccccccccccccccccccccccccccccccccccccccccccc------
Confidence                                        1123477889999999999999999999999999998765443221      


Q ss_pred             EEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCceee--eecc-cCCCee
Q psy12697        450 YTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQ--QFSF-HSAPAL  526 (602)
Q Consensus       450 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~--~~~~-~~~~v~  526 (602)
                                               .+..|..+|++++|+|++++|++|+.||.|++||++++....  .... +...+.
T Consensus       219 -------------------------~~~~h~~~v~~l~~s~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~  273 (299)
T d1nr0a2         219 -------------------------SWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVN  273 (299)
T ss_dssp             -------------------------CCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEE
T ss_pred             -------------------------cccccccccccccccccccceEEEcCCCEEEEEECCCCCcceEEEecCCCCCcEE
Confidence                                     234577889999999999999999999999999998875433  2223 344567


Q ss_pred             EeeecCCceEEEeeCCCcEEEeec
Q psy12697        527 DVDWQSNTSFASCSTDQHIHVCKL  550 (602)
Q Consensus       527 ~~~~s~~~~l~~~~~d~~i~iw~~  550 (602)
                      ++.|.++..|++++.|+.|++||+
T Consensus       274 ~~~~~~~~~l~s~s~D~~i~iWdl  297 (299)
T d1nr0a2         274 SVIWLNETTIVSAGQDSNIKFWNV  297 (299)
T ss_dssp             EEEEEETTEEEEEETTSCEEEEEC
T ss_pred             EEEECCCCEEEEEeCCCEEEEEec
Confidence            676655559999999999999997

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.5e-38  Score=301.85  Aligned_cols=328  Identities=21%  Similarity=0.387  Sum_probs=261.5

Q ss_pred             eecccceeeeeeeccCCceEEEEECCCCCeEEEeeCCceEEEEecCCceeEEEeeccCceEEEEeCCCCCCCCCCCCccc
Q psy12697        125 WDVERGECLNTLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKGTGGIFEVCWNSRGTPPNPPESMEV  204 (602)
Q Consensus       125 wd~~~~~~~~~l~~h~~~V~~~~~s~d~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  204 (602)
                      |+..+.++.+.|+||++.|.+ +++++|++||||+.||+|+|||+.+++++.                            
T Consensus         1 W~~~~~~~~~~l~GH~~~V~s-~~~~~g~~l~sgs~Dg~i~vWd~~~~~~~~----------------------------   51 (342)
T d2ovrb2           1 WRRGELKSPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLR----------------------------   51 (342)
T ss_dssp             HHHSCCCCCEEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEE----------------------------
T ss_pred             CCCCCCCcCEEECCcCCceEE-EEEECCCEEEEEeCCCeEEEEECCCCCEEE----------------------------
Confidence            667778888999999999865 477789999999999999999999998874                            


Q ss_pred             cccccccCCcceEeeCCCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCcee
Q psy12697        205 DASIEIPQSKATKLIGHESEVFICAWNPVKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVT  284 (602)
Q Consensus       205 ~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  284 (602)
                                  .+.+|...|.+++|+|+  +|++++.|+.+++|+........        ..        ......+.
T Consensus        52 ------------~~~~h~~~V~~v~~~~~--~l~s~s~D~~~~~~~~~~~~~~~--------~~--------~~~~~~~~  101 (342)
T d2ovrb2          52 ------------TLVGHTGGVWSSQMRDN--IIISGSTDRTLKVWNAETGECIH--------TL--------YGHTSTVR  101 (342)
T ss_dssp             ------------ECCCCSSCEEEEEEETT--EEEEEETTSCEEEEETTTTEEEE--------EE--------CCCSSCEE
T ss_pred             ------------EEeCCCCCEEEEEeCCC--ccccceeccccccccccccccee--------cc--------cccceeEe
Confidence                        44579999999999874  99999999999999987653210        00        01123333


Q ss_pred             EEeeCCCCCeEEEEeCCCeEEEEcCCCc-ceeecccccCCeEEEEEccCCCEEEEEecCCcEEEEeCCCCceeEEeeecc
Q psy12697        285 SLDWNNNGSFLATGSYDGYARIWTSDGS-LKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHS  363 (602)
Q Consensus       285 ~~~~~~~~~~l~~~~~dg~i~i~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~  363 (602)
                      ....  ....++.+..|+.+.+|+.... ....+..+....  ..+.+....+++++.|+.+++||....+.+..+..+.
T Consensus       102 ~~~~--~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~  177 (342)
T d2ovrb2         102 CMHL--HEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAV--RCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHT  177 (342)
T ss_dssp             EEEE--ETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCE--EEEEECSSCEEEEETTSCEEEEEGGGTEEEEEECCCS
T ss_pred             eeec--ccccccccccceeEEEeecccccceeeeecccccc--eeeccccceeeeecCCCeEEEeecccceeeEEEcCcc
Confidence            3333  3457888999999999998743 333333333332  3344566789999999999999999999998888888


Q ss_pred             CCeeeeeccCCCeEEEeeCCCeEEEEEcCCCceeeEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeeeEeec
Q psy12697        364 APALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHDLQ  443 (602)
Q Consensus       364 ~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  443 (602)
                      ..+....+. +..+++++.||.|++||++.++++..+.+|...+.++++++  ++|++++.||.|++||+...+....+.
T Consensus       178 ~~~~~~~~~-~~~l~s~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~--~~l~s~s~d~~i~iwd~~~~~~~~~~~  254 (342)
T d2ovrb2         178 NRVYSLQFD-GIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKD--NILVSGNADSTVKIWDIKTGQCLQTLQ  254 (342)
T ss_dssp             SCEEEEEEC-SSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEET--TEEEEEETTSCEEEEETTTCCEEEEEC
T ss_pred             cccccccCC-CCEEEEEeCCCeEEEeecccceeeeEecccccceeEEecCC--CEEEEEcCCCEEEEEeccccccccccc
Confidence            777776663 56799999999999999999999999999999999888765  599999999999999999887766655


Q ss_pred             cccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeeec----
Q psy12697        444 AHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFS----  519 (602)
Q Consensus       444 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~----  519 (602)
                      .+.                               .|...+.++.++  ++++++|+.||.|++||++++++++.+.    
T Consensus       255 ~~~-------------------------------~~~~~~~~~~~~--~~~~~s~s~Dg~i~iwd~~tg~~i~~~~~~~~  301 (342)
T d2ovrb2         255 GPN-------------------------------KHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRNLVTLES  301 (342)
T ss_dssp             STT-------------------------------SCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEEECTT
T ss_pred             ccc-------------------------------eeeeceeecccC--CCeeEEEcCCCEEEEEECCCCCEEEEEecccC
Confidence            432                               244555555554  4689999999999999999999988764    


Q ss_pred             -ccCCCeeEeeecCCc-eEEEeeCCCc----EEEeecC
Q psy12697        520 -FHSAPALDVDWQSNT-SFASCSTDQH----IHVCKLH  551 (602)
Q Consensus       520 -~~~~~v~~~~~s~~~-~l~~~~~d~~----i~iw~~~  551 (602)
                       +|...|++++|+|++ .+++|+.||+    |++||++
T Consensus       302 ~~~~~~v~~v~~s~~~~~la~g~~dGt~~~~l~~~Df~  339 (342)
T d2ovrb2         302 GGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFD  339 (342)
T ss_dssp             GGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECC
T ss_pred             CCCCCCEEEEEECCCCCEEEEEeCCCCCeeEEEEEeCC
Confidence             577889999999999 8999998885    9999975

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=5e-39  Score=311.25  Aligned_cols=304  Identities=19%  Similarity=0.269  Sum_probs=231.7

Q ss_pred             cCCceEEEEECCCCCeEEEeeCCceEEEEecCCceeEEEeeccCceEEEEeCCCCCCCCCCCCccccccccccCCcceEe
Q psy12697        139 HTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKGTGGIFEVCWNSRGTPPNPPESMEVDASIEIPQSKATKL  218 (602)
Q Consensus       139 h~~~V~~~~~s~d~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  218 (602)
                      +.++|+|++|+|||++||+|+.|+.|+|||+.+++....                                      ..+
T Consensus         6 ~~~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~--------------------------------------~~l   47 (371)
T d1k8kc_           6 LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQV--------------------------------------HEL   47 (371)
T ss_dssp             CSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEE--------------------------------------EEE
T ss_pred             CCCCeEEEEECCCCCEEEEEeCCCEEEEEECCCCCEEEE--------------------------------------EEe
Confidence            357899999999999999999999999999988764432                                      456


Q ss_pred             eCCCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEeeCCCCCeEEEE
Q psy12697        219 IGHESEVFICAWNPVKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFLATG  298 (602)
Q Consensus       219 ~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~  298 (602)
                      .+|..+|.+++|+|++++|++++.|++|++||+.++.....      .        ....+...|++++|+|+++.|++|
T Consensus        48 ~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~~~~------~--------~~~~~~~~v~~i~~~p~~~~l~~~  113 (371)
T d1k8kc_          48 KEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPT------L--------VILRINRAARCVRWAPNEKKFAVG  113 (371)
T ss_dssp             ECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEE------E--------ECCCCSSCEEEEEECTTSSEEEEE
T ss_pred             cCCCCCEEEEEECCCCCEEEEEECCCeEEEEeecccccccc------c--------ccccccccccccccccccccceee
Confidence            78999999999999999999999999999999976532100      0        112346789999999999999999


Q ss_pred             eCCCeEEEEcCCCc-----ceeecccccCCeEEEEEccCCCEEEEEecCCcEEEEeCCCCceeEEeeeccCCeeeeeccC
Q psy12697        299 SYDGYARIWTSDGS-----LKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQS  373 (602)
Q Consensus       299 ~~dg~i~i~~~~~~-----~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~  373 (602)
                      +.|+.+++|+.+..     .......|...|.+++|+|++++|++++.|+.+++||..............       +. 
T Consensus       114 s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~-------~~-  185 (371)
T d1k8kc_         114 SGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTP-------WG-  185 (371)
T ss_dssp             ETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBT-------TB-
T ss_pred             cccCcceeeeeecccccccccccccccccccccccccccccceeccccCcEEEEEeeccCcccccccccc-------cc-
Confidence            99999999986532     233456788999999999999999999999999999987654322111100       00 


Q ss_pred             CCeEEEeeCCCeEEEEEcCCCceeeEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeeeEeeccccccEEEEE
Q psy12697        374 NTSFASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHDLQAHNKEIYTIK  453 (602)
Q Consensus       374 ~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~  453 (602)
                                     .+...+..+....+|...|.+++|+|++++|++++.|+.|++||+.++..+..+..|        
T Consensus       186 ---------------~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~--------  242 (371)
T d1k8kc_         186 ---------------SKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASE--------  242 (371)
T ss_dssp             ---------------SCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECS--------
T ss_pred             ---------------ccccceeeeeeccCccCcEEEEEeecccccccccccCCcceEEeeecccceeeeecc--------
Confidence                           011233456667789999999999999999999999999999999988877776654        


Q ss_pred             ECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCCCeEEEEeCCC--Cceee---------------
Q psy12697        454 WSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAAS--GQCEQ---------------  516 (602)
Q Consensus       454 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~~~--~~~~~---------------  516 (602)
                                                ..+|.+++|+|++++|++| .|+.+++|+...  +....               
T Consensus       243 --------------------------~~~v~s~~fs~d~~~la~g-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  295 (371)
T d1k8kc_         243 --------------------------TLPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGL  295 (371)
T ss_dssp             --------------------------SCCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------
T ss_pred             --------------------------cccceeeeecCCCCEEEEE-cCCceEEEEeeCCCceEEEeeeecCccccccccc
Confidence                                      4455666666777777655 466666654322  11100               


Q ss_pred             ------------------------eecccCCCeeEeeecCCc-----eEEEeeCCCcEEEeecCC
Q psy12697        517 ------------------------QFSFHSAPALDVDWQSNT-----SFASCSTDQHIHVCKLHS  552 (602)
Q Consensus       517 ------------------------~~~~~~~~v~~~~~s~~~-----~l~~~~~d~~i~iw~~~~  552 (602)
                                              ....|.+.|+++++.|.+     .++|++.||.|++||+++
T Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~I~~i~~~~~~~~~~~~~~T~g~Dg~v~iW~~~~  360 (371)
T d1k8kc_         296 TARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRS  360 (371)
T ss_dssp             CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHH
T ss_pred             cceeeEecccceeEEeccccccceecccccCCEEEEEEeCCCCcceEEEEEEcCCCeEEEEeCCc
Confidence                                    001388889999987643     488999999999999854

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=4.8e-38  Score=295.42  Aligned_cols=277  Identities=18%  Similarity=0.281  Sum_probs=233.6

Q ss_pred             CCceeEEeeCCCCCeEEEEeCCCeEEEEcCC-CcceeecccccCCeEEEEEccCCCEEEEEecCCcEEEEeCCCCcee--
Q psy12697        280 NKDVTSLDWNNNGSFLATGSYDGYARIWTSD-GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCE--  356 (602)
Q Consensus       280 ~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~--  356 (602)
                      .+....++++|+|+.|+.+. ++.+.+|+++ ......+.+|...|++++|+|+|++|++|+.||+|++||+.++...  
T Consensus        17 r~~~~~~a~~~~g~~l~~~~-~~~v~i~~~~~~~~~~~~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~~~   95 (311)
T d1nr0a1          17 RGTAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILK   95 (311)
T ss_dssp             TTCCCCCEECTTSSEEEEEE-TTEEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEE
T ss_pred             CCCeEEEEEcCCCCEEEEEe-CCEEEEEECCCCceeEEEcCCCCCEEEEEEeCCCCeEeccccCceEeeeeeeccccccc
Confidence            35677899999999999875 5679999987 4566778899999999999999999999999999999999988654  


Q ss_pred             EEeeeccCCeeeeeccCCCe-EEEeeC--CCeEEEEEcCCCceeeEeccCCCCeEEEEECCCCCE-EEEEECCCeEEEEe
Q psy12697        357 QQFSFHSAPALDVDWQSNTS-FASCST--DQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLL-LASCSDDMTLKIWS  432 (602)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~-l~~~~~dg~i~iwd  432 (602)
                      ..+..|..++.+++|++++. +++++.  +..+++|++.++++...+.+|...|++++|+|++++ |++|+.||.|++||
T Consensus        96 ~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d  175 (311)
T d1nr0a1          96 TTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFE  175 (311)
T ss_dssp             EEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEE
T ss_pred             cccccccCccccccccccccccccccccccccccccccccccccccccccccccccccccccceeeeccccccccccccc
Confidence            45677889999999999865 555654  456999999999999999999999999999999885 88899999999999


Q ss_pred             CCCCeeeEeeccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCC
Q psy12697        433 LDKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASG  512 (602)
Q Consensus       433 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~~~~  512 (602)
                      +++++....+..                                  |..+|.++.|+|++++|++++.|+.|++||..++
T Consensus       176 ~~~~~~~~~~~~----------------------------------~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~  221 (311)
T d1nr0a1         176 GPPFKFKSTFGE----------------------------------HTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDG  221 (311)
T ss_dssp             TTTBEEEEEECC----------------------------------CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTC
T ss_pred             cccccccccccc----------------------------------ccccccccccCccccccccccccccccccccccc
Confidence            998887766554                                  4556667777778899999999999999999998


Q ss_pred             ceeeeec-------ccCCCeeEeeecCCc-eEEEeeCCCcEEEeecCCCCceeeeecccccceEEEEecCCcEEEEEECC
Q psy12697        513 QCEQQFS-------FHSAPALDVDWQSNT-SFASCSTDQHIHVCKLHSDKPVKSFEGHTTGQLVHSYKGTGGIFEVCWNS  584 (602)
Q Consensus       513 ~~~~~~~-------~~~~~v~~~~~s~~~-~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp  584 (602)
                      .....+.       +|.+.|++++|+|++ +|++|+.||.|+|||+++++++..+..+...        ...+.++.|+ 
T Consensus       222 ~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t~~~~~~l~~~~~~--------~~~~~~~~~~-  292 (311)
T d1nr0a1         222 TKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRI--------EDQQLGIIWT-  292 (311)
T ss_dssp             CEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSG--------GGCEEEEEEC-
T ss_pred             cccccccccccccccccccccccccCCCCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCc--------cceEEEEEec-
Confidence            8776554       588899999999999 9999999999999999998888877655321        1234555555 


Q ss_pred             CCCeEEEeccCCeEEee
Q psy12697        585 RGDKVGASASDGSVFKN  601 (602)
Q Consensus       585 dg~~l~~~~~dg~v~i~  601 (602)
                       ++.|++++.||.|++.
T Consensus       293 -~~~l~s~s~dG~i~~w  308 (311)
T d1nr0a1         293 -KQALVSISANGFINFV  308 (311)
T ss_dssp             -SSCEEEEETTCCEEEE
T ss_pred             -CCEEEEEECCCEEEEE
Confidence             5679999999999874

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=4.5e-36  Score=287.03  Aligned_cols=280  Identities=17%  Similarity=0.272  Sum_probs=247.2

Q ss_pred             cCCCCceeEEeeCCCCCeEEEEeCCCeEEEEcCC-CcceeecccccCCeEEEEEccCCCEEEEEecCCcEEEEeCCCCc-
Q psy12697        277 VPSNKDVTSLDWNNNGSFLATGSYDGYARIWTSD-GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQ-  354 (602)
Q Consensus       277 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~-  354 (602)
                      ..|.+.|++++|+|++++|++|+.||.|++||.. +.....+..|...|.+++|+|+++++++++.|+.+.+|+..... 
T Consensus        52 ~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~~i~~~~~~~~~~  131 (340)
T d1tbga_          52 RGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREG  131 (340)
T ss_dssp             CCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEEECSCSCEEEEEECTTSSEEEEEETTCCEEEEESSSSCS
T ss_pred             CCCCCCEEEEEECCCCCEEEEEECCCceeeeecccceeEEEEecccccEEeeEeeccceeeeeecccceeeccccccccc
Confidence            3578999999999999999999999999999976 66777888999999999999999999999999999999976543 


Q ss_pred             ---eeEEeeeccCCeeeeeccCCCeEEEeeCCCeEEEEEcCCCceeeEeccCCCCeEEEEECCCCCEEEEEECCCeEEEE
Q psy12697        355 ---CEQQFSFHSAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIW  431 (602)
Q Consensus       355 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw  431 (602)
                         ....+..+...........+..+.....+.....+.............+...+....+.+.+.++++++.|+.|++|
T Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~i~  211 (340)
T d1tbga_         132 NVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLW  211 (340)
T ss_dssp             CCCEEEEECCCSSCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTTEEEEE
T ss_pred             ccccceecccccccccccccccccccccccccccccccccccccccccccccceeEeeeccccccceeEEeecCceEEEE
Confidence               34455566667777777778889999999999999999888888888888999999999999999999999999999


Q ss_pred             eCCCCeeeEeeccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCCCeEEEEeCCC
Q psy12697        432 SLDKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAAS  511 (602)
Q Consensus       432 d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~~~  511 (602)
                      |+++++++..+..|                                  ...|++++|+|++++|++|+.||.|++||+..
T Consensus       212 d~~~~~~~~~~~~h----------------------------------~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~  257 (340)
T d1tbga_         212 DVREGMCRQTFTGH----------------------------------ESDINAICFFPNGNAFATGSDDATCRLFDLRA  257 (340)
T ss_dssp             ETTTTEEEEEECCC----------------------------------SSCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred             ECCCCcEEEEEeCC----------------------------------CCCeEEEEECCCCCEEEEEeCCCeEEEEeecc
Confidence            99999888776654                                  45566677777889999999999999999998


Q ss_pred             Cceeeeec--ccCCCeeEeeecCCc-eEEEeeCCCcEEEeecCCCCceeeeecccccceEEEEecCCcEEEEEECCCCCe
Q psy12697        512 GQCEQQFS--FHSAPALDVDWQSNT-SFASCSTDQHIHVCKLHSDKPVKSFEGHTTGQLVHSYKGTGGIFEVCWNSRGDK  588 (602)
Q Consensus       512 ~~~~~~~~--~~~~~v~~~~~s~~~-~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~  588 (602)
                      ...+..+.  .+...|.+++|+|++ +|++|+.||.|++||+.+++++..+.+|.           ++|++++|+||+++
T Consensus       258 ~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~H~-----------~~V~~l~~s~d~~~  326 (340)
T d1tbga_         258 DQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHD-----------NRVSCLGVTDDGMA  326 (340)
T ss_dssp             TEEEEEECCTTCCSCEEEEEECSSSCEEEEEETTSCEEEEETTTCCEEEEECCCS-----------SCEEEEEECTTSSC
T ss_pred             cccccccccccccCceEEEEECCCCCEEEEEECCCEEEEEECCCCcEEEEEcCCC-----------CCEEEEEEeCCCCE
Confidence            88776553  466789999999999 99999999999999999999988888775           77999999999999


Q ss_pred             EEEeccCCeEEee
Q psy12697        589 VGASASDGSVFKN  601 (602)
Q Consensus       589 l~~~~~dg~v~i~  601 (602)
                      |++|+.||+|+|+
T Consensus       327 l~s~s~Dg~v~iW  339 (340)
T d1tbga_         327 VATGSWDSFLKIW  339 (340)
T ss_dssp             EEEEETTSCEEEE
T ss_pred             EEEEccCCEEEEe
Confidence            9999999999985

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.1e-36  Score=293.07  Aligned_cols=318  Identities=20%  Similarity=0.310  Sum_probs=241.1

Q ss_pred             ceEeeCCCcce-EEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEeeCCCCC
Q psy12697        215 ATKLIGHESEV-FICAWNPVKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGS  293 (602)
Q Consensus       215 ~~~l~~h~~~v-~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  293 (602)
                      ..+|.||...| +|++  +++++|++|+.||+|++||+.+++..     .           ....|...|++++|+|+ .
T Consensus         5 ~~tL~GH~~~vitc~~--~~~~~l~tgs~Dg~i~vWd~~~~~~~-----~-----------~l~~H~~~V~~l~~s~~-~   65 (355)
T d1nexb2           5 RTTLRGHMTSVITCLQ--FEDNYVITGADDKMIRVYDSINKKFL-----L-----------QLSGHDGGVWALKYAHG-G   65 (355)
T ss_dssp             EEEEECCSSSCEEEEE--EETTEEEEEETTTEEEEEETTTTEEE-----E-----------EEECCSSCEEEEEEETT-T
T ss_pred             cEEECCcCCCcEEEEE--ECCCEEEEEeCCCeEEEEECCCCcEE-----E-----------EEECCCCCEEEEEEcCC-C
Confidence            36789999886 5555  46889999999999999999876432     1           11246789999999986 5


Q ss_pred             eEEEEeCCCeEEEEcCCCccee-ecc--cccCCeEEEEEccCCCEEEEEecCCcEEEEeCCCCceeEEeeec--------
Q psy12697        294 FLATGSYDGYARIWTSDGSLKS-TLG--QHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFH--------  362 (602)
Q Consensus       294 ~l~~~~~dg~i~i~~~~~~~~~-~~~--~~~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~--------  362 (602)
                      +|++|+.||.|++|+....... ...  .+........+.++++++++++.|+.|++||+.+..........        
T Consensus        66 ~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~  145 (355)
T d1nexb2          66 ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFH  145 (355)
T ss_dssp             EEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCCEEES
T ss_pred             EEEEEecccccccccccccccccccccccccccccccccccccceeeeecCCCcEEEEEccCCceeccccccceecccee
Confidence            8999999999999998754332 222  23334556677889999999999999999999876544322111        


Q ss_pred             ---------------cCCeeeeeccCCCeEEEeeCCCeEEEEEcCCCceeeEeccCCCCeEEEEECCCCCEEEEEECCCe
Q psy12697        363 ---------------SAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMT  427 (602)
Q Consensus       363 ---------------~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~  427 (602)
                                     ...+... ...+..++.+..|+.+++||+.+++.+....++...+.++.++|++.++++++.|+.
T Consensus       146 ~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~  224 (355)
T d1nexb2         146 TPEENPYFVGVLRGHMASVRTV-SGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTT  224 (355)
T ss_dssp             CTTTCTTEEEEEECCSSCEEEE-EEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSC
T ss_pred             ccccccceeeeeeecccccccc-ccccceeeeecccceeeeeecccccceeeeeccccccccccccccceeeecccccce
Confidence                           1111111 112456888999999999999999999999999999999999999999999999999


Q ss_pred             EEEEeCCCCeeeEeeccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCCCeEEEE
Q psy12697        428 LKIWSLDKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIW  507 (602)
Q Consensus       428 i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iw  507 (602)
                      |++||++++..+..+..|...|.++                                  +++  +++|++++.||.|++|
T Consensus       225 i~i~d~~~~~~~~~~~~h~~~v~~~----------------------------------~~~--~~~l~~~~~dg~i~iw  268 (355)
T d1nexb2         225 IRIWDLENGELMYTLQGHTALVGLL----------------------------------RLS--DKFLVSAAADGSIRGW  268 (355)
T ss_dssp             EEEEETTTCCEEEEECCCSSCCCEE----------------------------------EEC--SSEEEEECTTSEEEEE
T ss_pred             EEeeecccccccccccccccccccc----------------------------------ccc--cceeeeeecccccccc
Confidence            9999999998888777665555444                                  443  3689999999999999


Q ss_pred             eCCCCceeeeecccCCCeeEee-ecCCceEEEeeCCCcEEEeecCCCCceee-eecccccceEEEEecCCcEEEEEECCC
Q psy12697        508 DAASGQCEQQFSFHSAPALDVD-WQSNTSFASCSTDQHIHVCKLHSDKPVKS-FEGHTTGQLVHSYKGTGGIFEVCWNSR  585 (602)
Q Consensus       508 d~~~~~~~~~~~~~~~~v~~~~-~s~~~~l~~~~~d~~i~iw~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~l~~spd  585 (602)
                      |+.++...  +..|...+.++. +++++.+++++.|+.|++||+++++++.. +.+|.           ++|.+++|+|+
T Consensus       269 d~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~g~d~~i~vwd~~tg~~~~~~~~~~~-----------~~V~~v~~~~~  335 (355)
T d1nexb2         269 DANDYSRK--FSYHHTNLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVHANILKDA-----------DQIWSVNFKGK  335 (355)
T ss_dssp             ETTTCCEE--EEEECTTCCCCCEEEECSSEEEEEETTEEEEEETTTCCBCCSCTTTTC-----------SEEEEEEEETT
T ss_pred             ccccccee--cccccCCceEEEEEcCCCCEEEEEeCCEEEEEECCCCCEEEEEecCCC-----------CCEEEEEEcCC
Confidence            99887644  445666666665 56666666667799999999999988753 44443           67999999987


Q ss_pred             CCeEEEeccCCeEEeeC
Q psy12697        586 GDKVGASASDGSVFKNV  602 (602)
Q Consensus       586 g~~l~~~~~dg~v~i~v  602 (602)
                       .++++++.||.++|++
T Consensus       336 -~~~~~~s~dg~~~l~~  351 (355)
T d1nexb2         336 -TLVAAVEKDGQSFLEI  351 (355)
T ss_dssp             -EEEEEEESSSCEEEEE
T ss_pred             -eEEEEEECCCcEEEEE
Confidence             4788889999988764

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.2e-36  Score=294.33  Aligned_cols=306  Identities=18%  Similarity=0.258  Sum_probs=235.7

Q ss_pred             CCceeEEeeCCCCCeEEEEeCCCeEEEEcCCCc---ceeecccccCCeEEEEEccCCCEEEEEecCCcEEEEeCCCCcee
Q psy12697        280 NKDVTSLDWNNNGSFLATGSYDGYARIWTSDGS---LKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCE  356 (602)
Q Consensus       280 ~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~  356 (602)
                      ..+|+|++|+|+|++||+|+.||.|++|+.++.   ....+.+|.++|.+++|+|++++|++++.|++|++||+.++...
T Consensus         7 ~~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~~   86 (371)
T d1k8kc_           7 VEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWK   86 (371)
T ss_dssp             SSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEE
T ss_pred             CCCeEEEEECCCCCEEEEEeCCCEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeecccccc
Confidence            367999999999999999999999999998643   45667899999999999999999999999999999999887654


Q ss_pred             EE--eeeccCCeeeeeccCCC-eEEEeeCCCeEEEEEcCCCce----eeEeccCCCCeEEEEECCCCCEEEEEECCCeEE
Q psy12697        357 QQ--FSFHSAPALDVDWQSNT-SFASCSTDQHIHVCKLHSDKP----VKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLK  429 (602)
Q Consensus       357 ~~--~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~i~d~~~~~~----~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~  429 (602)
                      ..  +..+...+.++.|+|++ .+++++.++.+++|++.....    ......|...|.+++|+|++++|++|+.|+.|+
T Consensus        87 ~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~D~~v~  166 (371)
T d1k8kc_          87 PTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCR  166 (371)
T ss_dssp             EEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred             cccccccccccccccccccccccceeecccCcceeeeeecccccccccccccccccccccccccccccceeccccCcEEE
Confidence            43  45677889999999875 588999999999999876543    234567889999999999999999999999999


Q ss_pred             EEeCCCCeeeEeeccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCCCeEEEEeC
Q psy12697        430 IWSLDKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDA  509 (602)
Q Consensus       430 iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~  509 (602)
                      +||...............          .      ..............|...|.+++|+|+|++|++++.|+.|++||+
T Consensus       167 v~~~~~~~~~~~~~~~~~----------~------~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~  230 (371)
T d1k8kc_         167 IFSAYIKEVEERPAPTPW----------G------SKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADA  230 (371)
T ss_dssp             EEECCCTTTSCCCCCBTT----------B------SCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEG
T ss_pred             EEeeccCccccccccccc----------c------ccccceeeeeeccCccCcEEEEEeecccccccccccCCcceEEee
Confidence            999875432211110000          0      000001122345568899999999999999999999999999999


Q ss_pred             CCCceeeeecccCCCeeEeeecCCceEEEeeCCCcEEEeecCCCCceeeeeccccc------------------------
Q psy12697        510 ASGQCEQQFSFHSAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEGHTTG------------------------  565 (602)
Q Consensus       510 ~~~~~~~~~~~~~~~v~~~~~s~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~------------------------  565 (602)
                      .+++.+..+..|..+|.+++|+||+.+++++.|+.+++|..........+......                        
T Consensus       231 ~~~~~~~~~~~~~~~v~s~~fs~d~~~la~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  310 (371)
T d1k8kc_         231 DKKMAVATLASETLPLLAVTFITESSLVAAGHDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASS  310 (371)
T ss_dssp             GGTTEEEEEECSSCCEEEEEEEETTEEEEEETTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC--
T ss_pred             ecccceeeeecccccceeeeecCCCCEEEEEcCCceEEEEeeCCCceEEEeeeecCccccccccccceeeEecccceeEE
Confidence            99999999999999999999999995556677888888776554322222111000                        


Q ss_pred             --ceEE--EE--ecCCcEEEEEECCCC----CeEEEeccCCeEEee
Q psy12697        566 --QLVH--SY--KGTGGIFEVCWNSRG----DKVGASASDGSVFKN  601 (602)
Q Consensus       566 --~~~~--~~--~~~~~i~~l~~spdg----~~l~~~~~dg~v~i~  601 (602)
                        ....  .+  .+.+.|.++++.|.+    ..+++++.||.|+|+
T Consensus       311 ~~~~~~~~~~~~~H~~~I~~i~~~~~~~~~~~~~~T~g~Dg~v~iW  356 (371)
T d1k8kc_         311 EGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIW  356 (371)
T ss_dssp             -------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEE
T ss_pred             eccccccceecccccCCEEEEEEeCCCCcceEEEEEEcCCCeEEEE
Confidence              0000  00  134579999997755    358999999999985

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.2e-34  Score=273.25  Aligned_cols=316  Identities=22%  Similarity=0.394  Sum_probs=249.1

Q ss_pred             ceEeeCCCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEeeCCCCCe
Q psy12697        215 ATKLIGHESEVFICAWNPVKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSF  294 (602)
Q Consensus       215 ~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  294 (602)
                      ...+.||.+.|.+ +++++|++|++|+.||+|++||+.+++...                ....|...|.+++|+|+  +
T Consensus         9 ~~~l~GH~~~V~s-~~~~~g~~l~sgs~Dg~i~vWd~~~~~~~~----------------~~~~h~~~V~~v~~~~~--~   69 (342)
T d2ovrb2           9 PKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLR----------------TLVGHTGGVWSSQMRDN--I   69 (342)
T ss_dssp             CEEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEE----------------ECCCCSSCEEEEEEETT--E
T ss_pred             CEEECCcCCceEE-EEEECCCEEEEEeCCCeEEEEECCCCCEEE----------------EEeCCCCCEEEEEeCCC--c
Confidence            3678999999875 467789999999999999999998765321                11246788999999875  8


Q ss_pred             EEEEeCCCeEEEEcCCCcce-eecccccCCeEEEEEccCCCEEEEEecCCcEEEEeCCCCceeEEeeeccCCeeeeeccC
Q psy12697        295 LATGSYDGYARIWTSDGSLK-STLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQS  373 (602)
Q Consensus       295 l~~~~~dg~i~i~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~  373 (602)
                      |++|+.|+.+++|+...... .....+...+......  ...+..+..|+.+.+|+..+++....+........ .....
T Consensus        70 l~s~s~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~  146 (342)
T d2ovrb2          70 IISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVR-CVQYD  146 (342)
T ss_dssp             EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEE-EEEEC
T ss_pred             cccceecccccccccccccceecccccceeEeeeecc--cccccccccceeEEEeecccccceeeeecccccce-eeccc
Confidence            99999999999999875433 3333444555555443  45788899999999999999988776655444333 33445


Q ss_pred             CCeEEEeeCCCeEEEEEcCCCceeeEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeeeEeeccccccEEEEE
Q psy12697        374 NTSFASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHDLQAHNKEIYTIK  453 (602)
Q Consensus       374 ~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~  453 (602)
                      ...++.++.++.+++||....+.+..+.+|...+..+.+  ++.+|++++.||.|++||++.++.+..+..|...+.++.
T Consensus       147 ~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~--~~~~l~s~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~  224 (342)
T d2ovrb2         147 GRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGME  224 (342)
T ss_dssp             SSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEE
T ss_pred             cceeeeecCCCeEEEeecccceeeEEEcCcccccccccC--CCCEEEEEeCCCeEEEeecccceeeeEecccccceeEEe
Confidence            677899999999999999999999999999887766655  678999999999999999999988887776655544443


Q ss_pred             ECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeeecc---cCCCeeEeee
Q psy12697        454 WSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSF---HSAPALDVDW  530 (602)
Q Consensus       454 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~---~~~~v~~~~~  530 (602)
                                                        +  ++++|++++.||.|++||+...+....+..   |...+.++.+
T Consensus       225 ----------------------------------~--~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  268 (342)
T d2ovrb2         225 ----------------------------------L--KDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQF  268 (342)
T ss_dssp             ----------------------------------E--ETTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEE
T ss_pred             ----------------------------------c--CCCEEEEEcCCCEEEEEecccccccccccccceeeeceeeccc
Confidence                                              3  346899999999999999999888777665   4556777777


Q ss_pred             cCCceEEEeeCCCcEEEeecCCCCceeeeecccccceEEEEecCCcEEEEEECCCCCeEEEeccCCe
Q psy12697        531 QSNTSFASCSTDQHIHVCKLHSDKPVKSFEGHTTGQLVHSYKGTGGIFEVCWNSRGDKVGASASDGS  597 (602)
Q Consensus       531 s~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~  597 (602)
                      +++ ++++++.||.|++||+++++.++.+.....+.      +.+.|++++|+|++.+||+|+.||+
T Consensus       269 ~~~-~~~s~s~Dg~i~iwd~~tg~~i~~~~~~~~~~------~~~~v~~v~~s~~~~~la~g~~dGt  328 (342)
T d2ovrb2         269 NKN-FVITSSDDGTVKLWDLKTGEFIRNLVTLESGG------SGGVVWRIRASNTKLVCAVGSRNGT  328 (342)
T ss_dssp             CSS-EEEEEETTSEEEEEETTTCCEEEEEEECTTGG------GTCEEEEEEECSSEEEEEEECSSSS
T ss_pred             CCC-eeEEEcCCCEEEEEECCCCCEEEEEecccCCC------CCCCEEEEEECCCCCEEEEEeCCCC
Confidence            654 89999999999999999998888775432210      2367999999999999999999996

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=1.7e-34  Score=270.75  Aligned_cols=278  Identities=14%  Similarity=0.224  Sum_probs=220.2

Q ss_pred             cCCCCceeEEeeCCCCCeEEEEeCCCeEEEEcCC-Ccceeec-ccccCCeEEEEEccCCCEEEEEecCCcEEEEeCCCCc
Q psy12697        277 VPSNKDVTSLDWNNNGSFLATGSYDGYARIWTSD-GSLKSTL-GQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQ  354 (602)
Q Consensus       277 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~-~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~  354 (602)
                      ..|...|++++|+|++++|++|+.||.|++||++ +.....+ ..|...|.+++|+|+++ +++++.|+.+++|+.....
T Consensus         9 ~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~-~~~~~~d~~v~~~~~~~~~   87 (299)
T d1nr0a2           9 YGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGD-LFTVSWDDHLKVVPAGGSG   87 (299)
T ss_dssp             CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSC-EEEEETTTEEEEECSSSSS
T ss_pred             CCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeeccce-eecccceeeEEEeccCCcc
Confidence            4578999999999999999999999999999987 4555555 46899999999999987 5667789999999986543


Q ss_pred             e---eEEeeeccCCeeeeeccCCCeEEEeeCCCeEEEEEcCCCceeeEeccCCCCeEEEEECCCCCEEEEEECCCeEEEE
Q psy12697        355 C---EQQFSFHSAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIW  431 (602)
Q Consensus       355 ~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw  431 (602)
                      .   ......+...+..+.+++++.+++++.++.+.+|+...  .....  ....+.+++|+|++++|++|+.||.|++|
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~i~~~~~~~--~~~~~--~~~~~~~~~~s~~~~~l~~g~~dg~i~~~  163 (299)
T d1nr0a2          88 VDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGK--LTEVP--ISYNSSCVALSNDKQFVAVGGQDSKVHVY  163 (299)
T ss_dssp             SCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTE--EEEEE--CSSCEEEEEECTTSCEEEEEETTSEEEEE
T ss_pred             cccccccccccccccccccccccccccccccccccccccccc--ccccc--ccccccccccccccccccccccccccccc
Confidence            2   22234456778889999999888888899999999543  22222  34468899999999999999999999999


Q ss_pred             eCCCCeeeEeeccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCCCeEEEEeCCC
Q psy12697        432 SLDKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAAS  511 (602)
Q Consensus       432 d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~~~  511 (602)
                      |+++++.....                                 ...|...|.+++|+|++++|++++.|+.|++||+.+
T Consensus       164 d~~~~~~~~~~---------------------------------~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~  210 (299)
T d1nr0a2         164 KLSGASVSEVK---------------------------------TIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVAN  210 (299)
T ss_dssp             EEETTEEEEEE---------------------------------EEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGG
T ss_pred             ccccccccccc---------------------------------cccccccccccccccccccccccccccccccccccc
Confidence            99876543221                                 112667788888899999999999999999999988


Q ss_pred             Ccee---eeecccCCCeeEeeecCCc-eEEEeeCCCcEEEeecCCCCceeeeecccccceEEEEecCCcEEEEEECCCCC
Q psy12697        512 GQCE---QQFSFHSAPALDVDWQSNT-SFASCSTDQHIHVCKLHSDKPVKSFEGHTTGQLVHSYKGTGGIFEVCWNSRGD  587 (602)
Q Consensus       512 ~~~~---~~~~~~~~~v~~~~~s~~~-~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~  587 (602)
                      +...   ..+.+|..+|++++|+|++ +|++|+.||.|++||++++...........        ....+..+.| ++++
T Consensus       211 ~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~--------~~~~v~~~~~-~~~~  281 (299)
T d1nr0a2         211 NFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAH--------AMSSVNSVIW-LNET  281 (299)
T ss_dssp             TTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSS--------TTSCEEEEEE-EETT
T ss_pred             cccccccccccccccccccccccccccceEEEcCCCEEEEEECCCCCcceEEEecCC--------CCCcEEEEEE-CCCC
Confidence            7655   4566789999999999999 999999999999999987754333221110        1245666655 5678


Q ss_pred             eEEEeccCCeEEee
Q psy12697        588 KVGASASDGSVFKN  601 (602)
Q Consensus       588 ~l~~~~~dg~v~i~  601 (602)
                      +|++++.||+|+|+
T Consensus       282 ~l~s~s~D~~i~iW  295 (299)
T d1nr0a2         282 TIVSAGQDSNIKFW  295 (299)
T ss_dssp             EEEEEETTSCEEEE
T ss_pred             EEEEEeCCCEEEEE
Confidence            99999999999985

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3.9e-35  Score=273.31  Aligned_cols=280  Identities=16%  Similarity=0.192  Sum_probs=214.9

Q ss_pred             ceeeeeeeccCCceEEEEECCCCCeEEEeeCCceEEEEecCCceeEEEeeccCceEEEEeCCCCCCCCCCCCcccccccc
Q psy12697        130 GECLNTLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKGTGGIFEVCWNSRGTPPNPPESMEVDASIE  209 (602)
Q Consensus       130 ~~~~~~l~~h~~~V~~~~~s~d~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (602)
                      .+++++|+||.++|++++|+|    |+||+.||+|++||+.++.                                    
T Consensus         3 ~~~i~~l~gH~~~I~~l~~s~----l~sgs~Dg~v~~Wd~~~~~------------------------------------   42 (287)
T d1pgua2           3 DEVLKTISGHNKGITALTVNP----LISGSYDGRIMEWSSSSMH------------------------------------   42 (287)
T ss_dssp             EEEEEEECCCSSCEEEEETTT----TEEEETTSCEEETTTTEEE------------------------------------
T ss_pred             cceeEEECCCCCceEEEEECc----EEEEeCCCeEEEEECCCCC------------------------------------
Confidence            578999999999999999998    9999999999999987532                                    


Q ss_pred             ccCCcceEeeCCCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEeeC
Q psy12697        210 IPQSKATKLIGHESEVFICAWNPVKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWN  289 (602)
Q Consensus       210 ~~~~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  289 (602)
                               .+|...|.++++++++ .+++++.|+++++|++.....                       ...+.+++++
T Consensus        43 ---------~~h~~~V~~~~~~~~~-~~~s~s~D~~v~~w~~~~~~~-----------------------~~~~~~~~~~   89 (287)
T d1pgua2          43 ---------QDHSNLIVSLDNSKAQ-EYSSISWDDTLKVNGITKHEF-----------------------GSQPKVASAN   89 (287)
T ss_dssp             ---------CCCCSCEEEEECCSTT-CCEEEETTTEEEETTEEEEEC-----------------------SSCEEEEEEC
T ss_pred             ---------CCCCCCEEEEEecCCC-eEEEEeecccccccccccccc-----------------------ccceeeeeec
Confidence                     3589999999998754 578999999999998754321                       2456778888


Q ss_pred             CCCCeEEEEeCCCeEEEEcCC-CcceeecccccCCeEEEEEccCCCEEEEEecCC-cEEEEeCCCCceeEEeeeccCCee
Q psy12697        290 NNGSFLATGSYDGYARIWTSD-GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDK-TTIIWDAASGQCEQQFSFHSAPAL  367 (602)
Q Consensus       290 ~~~~~l~~~~~dg~i~i~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg-~i~~wd~~~~~~~~~~~~~~~~~~  367 (602)
                      +++..++++.. +.+.+|+.. +.....+. +...+  .+++++++.+++++.++ .+++|++...+...          
T Consensus        90 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~~~----------  155 (287)
T d1pgua2          90 NDGFTAVLTND-DDLLILQSFTGDIIKSVR-LNSPG--SAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSF----------  155 (287)
T ss_dssp             SSSEEEEEETT-SEEEEEETTTCCEEEEEE-CSSCE--EEEEECSSEEEEEETTTSCEEEEETTEEEEEE----------
T ss_pred             cCCceEEEeec-ccceeeeccceeeeeecc-cccee--eeeeccCcceeeeccccceeeeeeccccceee----------
Confidence            88877666554 445666644 44444443 22333  44566677777776654 57888765332211          


Q ss_pred             eeeccCCCeEEEeeCCCeEEEEEcCCCceeeEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeeeEe-ecccc
Q psy12697        368 DVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHD-LQAHN  446 (602)
Q Consensus       368 ~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~-~~~~~  446 (602)
                                                    .....|...+++++|+|++++|++|+.||.|++||+.+++.... +..|.
T Consensus       156 ------------------------------~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~  205 (287)
T d1pgua2         156 ------------------------------DLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRT  205 (287)
T ss_dssp             ------------------------------ECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCS
T ss_pred             ------------------------------eeeeccCCceeEEEeccCccccccccccccccceeecccccccccccccc
Confidence                                          11123667899999999999999999999999999998876553 56788


Q ss_pred             ccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCCCeEEEEeCCC-CceeeeecccCCCe
Q psy12697        447 KEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAAS-GQCEQQFSFHSAPA  525 (602)
Q Consensus       447 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~v  525 (602)
                      ..|.+++|+|.+.                        ....+.+++.+|++|+.|+.|++||+++ ++.+..+.+|...|
T Consensus       206 ~~v~~~~~~p~~~------------------------~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~h~~~V  261 (287)
T d1pgua2         206 SKINAISWKPAEK------------------------GANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGV  261 (287)
T ss_dssp             SCEEEEEECCCC------------------------------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCE
T ss_pred             cccceeeeccccc------------------------ccccccCCCCeeEeecCCCeEEEEECCCCCeEEEEeCCCCCCe
Confidence            8899999988654                        2334456888999999999999999977 55677888999999


Q ss_pred             eEeeecCCceEEEeeCCCcEEEeec
Q psy12697        526 LDVDWQSNTSFASCSTDQHIHVCKL  550 (602)
Q Consensus       526 ~~~~~s~~~~l~~~~~d~~i~iw~~  550 (602)
                      ++++|+|++.|++++.|+.|++|++
T Consensus       262 ~~v~~~~~~~l~s~g~D~~v~iW~i  286 (287)
T d1pgua2         262 NNLLWETPSTLVSSGADACIKRWNV  286 (287)
T ss_dssp             EEEEEEETTEEEEEETTSCEEEEEE
T ss_pred             EEEEECCCCEEEEEECCCeEEEEEE
Confidence            9999999999999999999999995

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.5e-34  Score=273.78  Aligned_cols=294  Identities=16%  Similarity=0.298  Sum_probs=223.1

Q ss_pred             ceEEEEECCCCCeEEEeeCCc-eEEEEecCCceeEEEeeccCceEEEEeCCCCCCCCCCCCccccccccccCCcceEeeC
Q psy12697        142 PVYSVAFSPDGKFLASGSFDK-CVHIWSARTGQLVHSYKGTGGIFEVCWNSRGTPPNPPESMEVDASIEIPQSKATKLIG  220 (602)
Q Consensus       142 ~V~~~~~s~d~~~l~s~~~d~-~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  220 (602)
                      .+++++|+|+++.||.++.+. .|+.|+....+.                                      .....+.+
T Consensus        19 ~~t~l~~~~~~~~la~~~~~~~~i~~~~~~~~~~--------------------------------------~~~~~~~g   60 (325)
T d1pgua1          19 FTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKV--------------------------------------PPVVQFTG   60 (325)
T ss_dssp             CCCCCEEETTTTEEEEEETTEEEEEECCSSCCSS--------------------------------------CSEEEECT
T ss_pred             CeEEEEECCCCCEEEEEeCCCEEEEEEeCCCCCc--------------------------------------cceEEEeC
Confidence            457899999999999887554 356666543221                                      11134556


Q ss_pred             C-CcceEEEEEcC--CCCEEEEeeCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEeeCCCCCeEEE
Q psy12697        221 H-ESEVFICAWNP--VKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFLAT  297 (602)
Q Consensus       221 h-~~~v~~~~~~~--~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~  297 (602)
                      | ...|++++|+|  ++.+|++|+.||+|++||+..+..........  ..      ....+..+|.+++|+++++++++
T Consensus        61 h~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~~--~~------~~~~~~~~v~~v~~s~~~~~l~~  132 (325)
T d1pgua1          61 HGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNV--KS------EFQVLAGPISDISWDFEGRRLCV  132 (325)
T ss_dssp             TTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEE--EE------EEECCSSCEEEEEECTTSSEEEE
T ss_pred             CCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCcceeeeeccc--cc------ccccccCcEEEEEECCCCCccce
Confidence            6 46899999998  56799999999999999997665433222111  11      11235678999999999999888


Q ss_pred             EeC--CCeEEEEcCC-CcceeecccccCCeEEEEEccCCCE-EEEEecCCcEEEEeCCCCceeEEeeeccCCeeeeeccC
Q psy12697        298 GSY--DGYARIWTSD-GSLKSTLGQHKGPIFALKWNKRGNY-ILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQS  373 (602)
Q Consensus       298 ~~~--dg~i~i~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~-l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~  373 (602)
                      ++.  ++.+.+|+.+ +.....+..|...|.+++|+|++++ +++++.|+.+++||..+.+......             
T Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~-------------  199 (325)
T d1pgua1         133 VGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDR-------------  199 (325)
T ss_dssp             EECCSSCSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEEC-------------
T ss_pred             eeccccceEEEEeecccccceeeeecccccccccccccccceEEEeecccccccccccccccceecc-------------
Confidence            765  5678999876 6777888899999999999999875 6788899999999987655433221             


Q ss_pred             CCeEEEeeCCCeEEEEEcCCCceeeEeccCCCCeEEEEECCC-CCEEEEEECCCeEEEEeCCCCeeeEeeccccccEEEE
Q psy12697        374 NTSFASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQ-GLLLASCSDDMTLKIWSLDKDNCVHDLQAHNKEIYTI  452 (602)
Q Consensus       374 ~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~  452 (602)
                                               ....|...|.+++|+|+ +.+|++++.||.|++||+++++.+..+..|...+..+
T Consensus       200 -------------------------~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~~~v~~~  254 (325)
T d1pgua1         200 -------------------------THHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGG  254 (325)
T ss_dssp             -------------------------SSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSC
T ss_pred             -------------------------cccCCCCccEEeeeccccceeccccccccceeeeeeccccccccccccccccccc
Confidence                                     23457778999999996 6899999999999999999999888887765543322


Q ss_pred             EECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeeecccCCC--ee--Ee
Q psy12697        453 KWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAP--AL--DV  528 (602)
Q Consensus       453 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~--v~--~~  528 (602)
                                                    +.++.| |+|++|++++.|+.|+|||+++++++..+..|...  +.  ++
T Consensus       255 ------------------------------~~s~~~-~dg~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  303 (325)
T d1pgua1         255 ------------------------------IFALSW-LDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGV  303 (325)
T ss_dssp             ------------------------------EEEEEE-SSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEE
T ss_pred             ------------------------------eeeeec-cCCCEEEEEeCCCeEEEEECCCCCEEEEEEecCCcccCeEEEE
Confidence                                          223333 57899999999999999999999999888776654  33  34


Q ss_pred             eecCCceEEEeeCCCcEEEeec
Q psy12697        529 DWQSNTSFASCSTDQHIHVCKL  550 (602)
Q Consensus       529 ~~s~~~~l~~~~~d~~i~iw~~  550 (602)
                      .+.+++.|++++.||.|++||+
T Consensus       304 ~~~~~~~l~s~s~dg~i~vwdl  325 (325)
T d1pgua1         304 VATGNGRIISLSLDGTLNFYEL  325 (325)
T ss_dssp             EEEETTEEEEEETTSCEEEEET
T ss_pred             EECCCCEEEEEECCCEEEEEEC
Confidence            4555558999999999999995

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=7e-34  Score=277.14  Aligned_cols=308  Identities=17%  Similarity=0.189  Sum_probs=212.2

Q ss_pred             eeeeccCCceEEEEECCCCCeEEEeeCCceEEEEecCCceeEEEeeccCceEEEEeCCCCCCCCCCCCccccccccccCC
Q psy12697        134 NTLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKGTGGIFEVCWNSRGTPPNPPESMEVDASIEIPQS  213 (602)
Q Consensus       134 ~~l~~h~~~V~~~~~s~d~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  213 (602)
                      ...++|.+.|.++++++  ++|+|+|.|++|+|||..+.+....                                  ..
T Consensus         8 ~~~~~H~~~I~~v~~~~--~~l~S~S~D~~iriWd~~~~~~~~~----------------------------------~~   51 (393)
T d1sq9a_           8 NAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENP----------------------------------KD   51 (393)
T ss_dssp             EESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCG----------------------------------GG
T ss_pred             ecCCcccCccEEEEEeC--CEEEEEECCCeEEEEECCCCCCCcc----------------------------------cc
Confidence            45679999999999874  6999999999999999866442100                                  00


Q ss_pred             cceEeeCCCcceE------EEEEcC-CCCEEEEeeCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEE
Q psy12697        214 KATKLIGHESEVF------ICAWNP-VKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSL  286 (602)
Q Consensus       214 ~~~~l~~h~~~v~------~~~~~~-~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  286 (602)
                      .......|...+.      .+..++ +..++++++.||.|++|++............     ... ......+...+..+
T Consensus        52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~dg~v~~w~~~~~~~~~~~~~~-----~~~-~~~~~~~~~~~~~~  125 (393)
T d1sq9a_          52 KSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFE-----KLD-LLDSDMKKHSFWAL  125 (393)
T ss_dssp             GEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEE-----EEC-CSCTTGGGSCEEEE
T ss_pred             eeEeeeeccCCceEeeeEeeeccCCCCCcEEEEEeCCCcEEEEEccCCCceeeeecc-----ccc-eeeeccCCCceEEE
Confidence            0011122333222      222222 2356789999999999998766543322111     100 01111223556777


Q ss_pred             eeCCC-----CCeEEEEeCCCeEEEEcCCCc--c-----------------eeecccccCCeEEEEEccCCCEEEEEecC
Q psy12697        287 DWNNN-----GSFLATGSYDGYARIWTSDGS--L-----------------KSTLGQHKGPIFALKWNKRGNYILSAGVD  342 (602)
Q Consensus       287 ~~~~~-----~~~l~~~~~dg~i~i~~~~~~--~-----------------~~~~~~~~~~i~~~~~~~~~~~l~~~~~d  342 (602)
                      +|.++     +.++++++.||.+++|++...  .                 ......+...+.+++|+|++ +|++|+.|
T Consensus       126 ~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~lasgs~D  204 (393)
T d1sq9a_         126 KWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNN  204 (393)
T ss_dssp             EEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTT
T ss_pred             EEecCCCcccccEEEEEcCCCcEEEEEeecCCcccceeeeeeccceecccceecccCCCCcEEEEEECCCC-EEEEEeCC
Confidence            77764     467899999999999986411  0                 11112344556777787776 67777778


Q ss_pred             CcEEEEeCCCCceeEEeeeccCCeeeeeccCCCeEEEeeCCCeEEEEEcCCCceeeEeccCCCCeEEEEECCCCCEEEEE
Q psy12697        343 KTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASC  422 (602)
Q Consensus       343 g~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~  422 (602)
                      |+|++||+.+++.+..+..                                   ...+.+|...|.+++|+|+|++|++|
T Consensus       205 g~i~iwd~~~~~~~~~~~~-----------------------------------~~~l~~h~~~V~~l~~spdg~~l~sg  249 (393)
T d1sq9a_         205 GTVQISELSTLRPLYNFES-----------------------------------QHSMINNSNSIRSVKFSPQGSLLAIA  249 (393)
T ss_dssp             SEEEEEETTTTEEEEEEEC-----------------------------------CC---CCCCCEEEEEECSSTTEEEEE
T ss_pred             CcEEEEeeccccccccccc-----------------------------------ccccccccceEEEcccccccceeeee
Confidence            8888888777665544331                                   23456799999999999999999999


Q ss_pred             ECCC---eEEEEeCCCCeeeEeeccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEe
Q psy12697        423 SDDM---TLKIWSLDKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAG  499 (602)
Q Consensus       423 ~~dg---~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~  499 (602)
                      +.|+   .|++||+.+++.+..+........                     ....+.+|...|++++|+||+++|++++
T Consensus       250 s~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~---------------------~~~~~~gH~~~V~~l~fspd~~~l~S~s  308 (393)
T d1sq9a_         250 HDSNSFGCITLYETEFGERIGSLSVPTHSSQ---------------------ASLGEFAHSSWVMSLSFNDSGETLCSAG  308 (393)
T ss_dssp             EEETTEEEEEEEETTTCCEEEEECBC-----------------------------CCBSBSSCEEEEEECSSSSEEEEEE
T ss_pred             cCCCCcceeeecccccceeeeeecccccccc---------------------ceeeeecccCceeeeccCCCCCeeEEEC
Confidence            9886   599999999998887764332211                     1224567999999999999999999999


Q ss_pred             CCCeEEEEeCCCCceeeeecccCCCee----EeeecCCc-eEEEee
Q psy12697        500 VDKTTIIWDAASGQCEQQFSFHSAPAL----DVDWQSNT-SFASCS  540 (602)
Q Consensus       500 ~dg~i~iwd~~~~~~~~~~~~~~~~v~----~~~~s~~~-~l~~~~  540 (602)
                      .|++|++||+++++++.++.+|.+.|.    .++|+|++ .+++++
T Consensus       309 ~D~~v~vWd~~~g~~~~~l~gH~~~v~~~~~~~~~~~~~~~~~~~~  354 (393)
T d1sq9a_         309 WDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPG  354 (393)
T ss_dssp             TTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCC
T ss_pred             CCCEEEEEECCCCCEEEEECCcCCcccCCccEEEECCCCCEEEEcc
Confidence            999999999999999999999998876    48899999 666554

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.8e-33  Score=265.03  Aligned_cols=283  Identities=14%  Similarity=0.220  Sum_probs=223.7

Q ss_pred             CCceeEEeeCCCCCeEEEEeCCC-eEEEEcCC---Ccceeecccc-cCCeEEEEEcc--CCCEEEEEecCCcEEEEeCCC
Q psy12697        280 NKDVTSLDWNNNGSFLATGSYDG-YARIWTSD---GSLKSTLGQH-KGPIFALKWNK--RGNYILSAGVDKTTIIWDAAS  352 (602)
Q Consensus       280 ~~~i~~~~~~~~~~~l~~~~~dg-~i~i~~~~---~~~~~~~~~~-~~~i~~~~~~~--~~~~l~~~~~dg~i~~wd~~~  352 (602)
                      ...+++++|+|+++.|+.++.+. .|+.|+..   ......+.+| ...|++++|+|  ++++|++++.||+|++||+..
T Consensus        17 ~~~~t~l~~~~~~~~la~~~~~~~~i~~~~~~~~~~~~~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~   96 (325)
T d1pgua1          17 RNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTF   96 (325)
T ss_dssp             TTCCCCCEEETTTTEEEEEETTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEE
T ss_pred             CCCeEEEEECCCCCEEEEEeCCCEEEEEEeCCCCCccceEEEeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecC
Confidence            35678999999999999887654 35667643   2345566666 46799999998  567999999999999999876


Q ss_pred             CceeE--------EeeeccCCeeeeeccCCCe-EEEee--CCCeEEEEEcCCCceeeEeccCCCCeEEEEECCCCCE-EE
Q psy12697        353 GQCEQ--------QFSFHSAPALDVDWQSNTS-FASCS--TDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLL-LA  420 (602)
Q Consensus       353 ~~~~~--------~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~-l~  420 (602)
                      ++...        .+..+..++.+++|++++. +++++  .++.+.+|+..+++.+..+.+|...|.+++|+|++.+ ++
T Consensus        97 ~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~  176 (325)
T d1pgua1          97 DKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSM  176 (325)
T ss_dssp             EGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSCEEE
T ss_pred             CcceeeeecccccccccccCcEEEEEECCCCCccceeeccccceEEEEeecccccceeeeecccccccccccccccceEE
Confidence            54332        2345778899999999865 44443  4678999999999999999999999999999998875 67


Q ss_pred             EEECCCeEEEEeCCCCeeeEeeccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccC-CCEEEEEe
Q psy12697        421 SCSDDMTLKIWSLDKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKR-GNYILSAG  499 (602)
Q Consensus       421 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~-~~~l~s~~  499 (602)
                      +++.|+.+++||....+.......                               ...|...|.+++|+|+ +++|++++
T Consensus       177 ~~~~d~~v~~~d~~~~~~~~~~~~-------------------------------~~~~~~~v~~v~~~pd~~~~l~s~~  225 (325)
T d1pgua1         177 TVGDDGSVVFYQGPPFKFSASDRT-------------------------------HHKQGSFVRDVEFSPDSGEFVITVG  225 (325)
T ss_dssp             EEETTTEEEEEETTTBEEEEEECS-------------------------------SSCTTCCEEEEEECSTTCCEEEEEE
T ss_pred             Eeecccccccccccccccceeccc-------------------------------ccCCCCccEEeeeccccceeccccc
Confidence            899999999999988766555432                               2236777888888886 68999999


Q ss_pred             CCCeEEEEeCCCCceeeeecccCCCeeEeeec---CCc-eEEEeeCCCcEEEeecCCCCceeeeecccccceEEEEecCC
Q psy12697        500 VDKTTIIWDAASGQCEQQFSFHSAPALDVDWQ---SNT-SFASCSTDQHIHVCKLHSDKPVKSFEGHTTGQLVHSYKGTG  575 (602)
Q Consensus       500 ~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s---~~~-~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~  575 (602)
                      .||.|++||+++++.+..+.+|..++.++.|+   ||+ +|++++.|+.|+|||+++++++..+..+....       ..
T Consensus       226 ~d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~-------~~  298 (325)
T d1pgua1         226 SDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQL-------GN  298 (325)
T ss_dssp             TTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCG-------GG
T ss_pred             cccceeeeeeccccccccccccccccccceeeeeccCCCEEEEEeCCCeEEEEECCCCCEEEEEEecCCcc-------cC
Confidence            99999999999999999999999888777766   677 99999999999999999988888776554221       11


Q ss_pred             cEEEEEECCCCCeEEEeccCCeEEee
Q psy12697        576 GIFEVCWNSRGDKVGASASDGSVFKN  601 (602)
Q Consensus       576 ~i~~l~~spdg~~l~~~~~dg~v~i~  601 (602)
                      ...++.|.++ .+|++++.||.|+|.
T Consensus       299 ~~~~~~~~~~-~~l~s~s~dg~i~vw  323 (325)
T d1pgua1         299 QQVGVVATGN-GRIISLSLDGTLNFY  323 (325)
T ss_dssp             CEEEEEEEET-TEEEEEETTSCEEEE
T ss_pred             eEEEEEECCC-CEEEEEECCCEEEEE
Confidence            1234445443 478899999999884

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.7e-32  Score=251.26  Aligned_cols=284  Identities=23%  Similarity=0.378  Sum_probs=223.3

Q ss_pred             eeeeeeeccCCceEEEEECCCCCeEEEeeCCceEEEEecCCceeEEEeeccCceEEEEeCCCCCCCCCCCCccccccccc
Q psy12697        131 ECLNTLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKGTGGIFEVCWNSRGTPPNPPESMEVDASIEI  210 (602)
Q Consensus       131 ~~~~~l~~h~~~V~~~~~s~d~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (602)
                      +.++...+|...|+|++  +||++||||+.||+|+|||+.+++++.                                  
T Consensus         6 ~~i~~~~~~~~~V~c~~--~d~~~l~sgs~Dg~i~vWd~~~~~~~~----------------------------------   49 (293)
T d1p22a2           6 QRIHCRSETSKGVYCLQ--YDDQKIVSGLRDNTIKIWDKNTLECKR----------------------------------   49 (293)
T ss_dssp             CCEECCCSSCCCEEEEE--CCSSEEEEEESSSCEEEEESSSCCEEE----------------------------------
T ss_pred             EEEeccCCCCCCEEEEE--EcCCEEEEEeCCCeEEEEECCCCcEEE----------------------------------
Confidence            34555677899999876  579999999999999999999998874                                  


Q ss_pred             cCCcceEeeCCCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEeeCC
Q psy12697        211 PQSKATKLIGHESEVFICAWNPVKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNN  290 (602)
Q Consensus       211 ~~~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  290 (602)
                            .+.+|...|.+++|  ++++|++++.|+.|++|++..+.......                  ........+.+
T Consensus        50 ------~l~~H~~~V~~v~~--~~~~l~s~s~D~~i~~~~~~~~~~~~~~~------------------~~~~~~~~~~~  103 (293)
T d1p22a2          50 ------ILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLI------------------HHCEAVLHLRF  103 (293)
T ss_dssp             ------EECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEEC------------------CCCSCEEEEEC
T ss_pred             ------EEecCCCCEeeeec--ccceeeccccccccccccccccccccccc------------------ccccccccccc
Confidence                  45679999999887  57899999999999999998765321100                  12223344556


Q ss_pred             CCCeEEEEeCCCeEEEEcCCCc----ceeecccccCCeEEEEEccCCCEEEEEecCCcEEEEeCCCCceeEEeeeccCCe
Q psy12697        291 NGSFLATGSYDGYARIWTSDGS----LKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPA  366 (602)
Q Consensus       291 ~~~~l~~~~~dg~i~i~~~~~~----~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~  366 (602)
                      ....++++..++.+.+|+....    ....+..|...+..+.+.+  ..+++++.|+.+++||+++++.+..+..+...+
T Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~s~d~~i~~~d~~~~~~~~~~~~~~~~v  181 (293)
T d1p22a2         104 NNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD--KYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGI  181 (293)
T ss_dssp             CTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEET--TEEEEEETTSEEEEEETTTCCEEEEEECCSSCE
T ss_pred             cccceeecccccceeEeeccccccccccccccccccccccceecc--cccccccCCCceeeecCCCCcEEEEEccccccc
Confidence            6678999999999999997632    3445567888888887764  578899999999999999999999999888888


Q ss_pred             eeeeccCCCeEEEeeCCCeEEEEEcCCCceeeEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeeeEeecccc
Q psy12697        367 LDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHDLQAHN  446 (602)
Q Consensus       367 ~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~  446 (602)
                      ..+.+.+ ..+++++.|+.|++||+++.+.+..+.+|...+..  +++++.+|++|+.||.|++||+...........  
T Consensus       182 ~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~--~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~--  256 (293)
T d1p22a2         182 ACLQYRD-RLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRC--IRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAG--  256 (293)
T ss_dssp             EEEEEET-TEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEE--EECCSSEEEEEETTSCEEEEEHHHHTSTTSCTT--
T ss_pred             ccccCCC-CeEEEecCCCEEEEEecccceeeeeecccceeeee--ccccceEEEEEcCCCEEEEEECCCCccccccCC--
Confidence            8887764 57899999999999999999999999999888875  456788999999999999999865322111110  


Q ss_pred             ccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCCCeEEEEe
Q psy12697        447 KEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWD  508 (602)
Q Consensus       447 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd  508 (602)
                                             ......+.+|.+.|++++|  ++++|++++.||+|++||
T Consensus       257 -----------------------~~~~~~~~~H~~~V~~v~~--d~~~l~s~s~Dg~i~iWD  293 (293)
T d1p22a2         257 -----------------------TLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWD  293 (293)
T ss_dssp             -----------------------TTEEEEECCCSSCCCCEEE--CSSCEEECCSSSEEEEEC
T ss_pred             -----------------------ceeeEEecCCCCCEEEEEE--cCCEEEEEecCCEEEEeC
Confidence                                   0011234557778888877  457899999999999998

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=5e-32  Score=258.48  Aligned_cols=311  Identities=9%  Similarity=0.074  Sum_probs=221.2

Q ss_pred             eeeeeeeccCCceEEEEECCCCCeEEEeeCCceEEEEecCCceeEEEeeccCceEEEEeCCCCCCCCCCCCccccccccc
Q psy12697        131 ECLNTLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKGTGGIFEVCWNSRGTPPNPPESMEVDASIEI  210 (602)
Q Consensus       131 ~~~~~l~~h~~~V~~~~~s~d~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (602)
                      +.++.+++|++.|++|+|+|++++||+|+.||+|+|||++++.....+                                
T Consensus         2 ~~v~~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~--------------------------------   49 (342)
T d1yfqa_           2 QIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDL--------------------------------   49 (342)
T ss_dssp             EEEECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEE--------------------------------
T ss_pred             CeEEcCCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEE--------------------------------
Confidence            567778899999999999999999999999999999999876543322                                


Q ss_pred             cCCcceEeeCCCcceEEEEEcCCC-CEEEEeeCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEeeC
Q psy12697        211 PQSKATKLIGHESEVFICAWNPVK-DFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWN  289 (602)
Q Consensus       211 ~~~~~~~l~~h~~~v~~~~~~~~~-~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  289 (602)
                           ....+|..+|.+++|+|++ .+|++|+.|+.|++|++..........               ..+........+.
T Consensus        50 -----~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~~w~~~~~~~~~~~~---------------~~~~~~~~~~~~~  109 (342)
T d1yfqa_          50 -----LQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALT---------------NNEANLGICRICK  109 (342)
T ss_dssp             -----EEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSEEECB---------------SCCCCSCEEEEEE
T ss_pred             -----EEecCCCCCEEEEEEeCCCCCEEEEcccccceeeeeccccccccccc---------------ccccccccccccc
Confidence                 2234699999999999875 589999999999999998765421110               1112334555667


Q ss_pred             CCCCeEEEEeCCCeEEEEcCCC-----cceeeccc--ccCCeEEEEEccCCCEEEEEecCCcEEEEeCCCCceeEEeeec
Q psy12697        290 NNGSFLATGSYDGYARIWTSDG-----SLKSTLGQ--HKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFH  362 (602)
Q Consensus       290 ~~~~~l~~~~~dg~i~i~~~~~-----~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~  362 (602)
                      ++...+++++.++.+++||.+.     ........  .........+.+.++.+++++.|+.+++||+..........  
T Consensus       110 ~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~--  187 (342)
T d1yfqa_         110 YGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTI--  187 (342)
T ss_dssp             ETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSEEEEEESTTEEEEEESSCCTTCCCEE--
T ss_pred             cccccccccccccccceeeccccccceeeecccccccccceeeeeeeeccCCceeeecCCCcEEEEecccCcccceee--
Confidence            7888999999999999999642     11112222  22334556677788889999999999999987654322111  


Q ss_pred             cCCeeeeeccCCCeEEEeeCCCeEEEEEcCCCceeeEeccCCCCeEEEEEC-CCCCEEEEEECCCeEEEEeCCCCeeeEe
Q psy12697        363 SAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWD-PQGLLLASCSDDMTLKIWSLDKDNCVHD  441 (602)
Q Consensus       363 ~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~-~~~~~l~~~~~dg~i~iwd~~~~~~~~~  441 (602)
                                                          ....+...+.+..+. +++..+++++.||.+.+|+.........
T Consensus       188 ------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~  231 (342)
T d1yfqa_         188 ------------------------------------EESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYN  231 (342)
T ss_dssp             ------------------------------------EECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTT
T ss_pred             ------------------------------------eecccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceee
Confidence                                                111122334444444 4678899999999999999875432221


Q ss_pred             eccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeeeccc
Q psy12697        442 LQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFH  521 (602)
Q Consensus       442 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~  521 (602)
                      ....    .....               .........|...|++++|+|++++|++|+.||.|++||+.+++.+..+..+
T Consensus       232 ~~~~----~~~~~---------------~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~~~l~~~~~~  292 (342)
T d1yfqa_         232 SSKR----FAFRC---------------HRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKF  292 (342)
T ss_dssp             CTTC----EEEEC---------------CCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCC
T ss_pred             cccc----ceeee---------------eeeccCCCcccccceeEEecCCccEEEEECCCCEEEEEECCCCcEEEEecCC
Confidence            1100    00000               0011123457788999999999999999999999999999999999888643


Q ss_pred             CCCeeEeeecCCc-eEEEeeCCCcEEEeecC
Q psy12697        522 SAPALDVDWQSNT-SFASCSTDQHIHVCKLH  551 (602)
Q Consensus       522 ~~~v~~~~~s~~~-~l~~~~~d~~i~iw~~~  551 (602)
                       ..+..++|+|++ .+++++.|+.+++|...
T Consensus       293 -~~~~~~~~s~~~~~l~~a~sdd~~~~~~~~  322 (342)
T d1yfqa_         293 -NEDSVVKIACSDNILCLATSDDTFKTNAAI  322 (342)
T ss_dssp             -SSSEEEEEEECSSEEEEEEECTHHHHCSSS
T ss_pred             -CCCEEEEEEeCCCEEEEEEcCCcEEEeeee
Confidence             345567788888 89999999999988753

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=4.9e-32  Score=263.99  Aligned_cols=326  Identities=17%  Similarity=0.289  Sum_probs=224.6

Q ss_pred             eEeeCCCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEeeCC-CCCe
Q psy12697        216 TKLIGHESEVFICAWNPVKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNN-NGSF  294 (602)
Q Consensus       216 ~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~  294 (602)
                      ....+|...|+++++++  +++++++.|++|++||..+.....+....  ........+.  .+......+..++ ++.+
T Consensus         8 ~~~~~H~~~I~~v~~~~--~~l~S~S~D~~iriWd~~~~~~~~~~~~~--~~~~~~~~~~--~~~~~~~~~~~~~~~~~~   81 (393)
T d1sq9a_           8 NAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKS--YSHFVHKSGL--HHVDVLQAIERDAFELCL   81 (393)
T ss_dssp             EESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGE--EEEECCTTCE--EEEEEEEEEETTTEEEEE
T ss_pred             ecCCcccCccEEEEEeC--CEEEEEECCCeEEEEECCCCCCCccccee--EeeeeccCCc--eEeeeEeeeccCCCCCcE
Confidence            44568999999999874  69999999999999998766543322221  1111111000  0011122223222 3456


Q ss_pred             EEEEeCCCeEEEEcCCCc-c---e-------eecccccCCeEEEEEccC-----CCEEEEEecCCcEEEEeCCCCceeE-
Q psy12697        295 LATGSYDGYARIWTSDGS-L---K-------STLGQHKGPIFALKWNKR-----GNYILSAGVDKTTIIWDAASGQCEQ-  357 (602)
Q Consensus       295 l~~~~~dg~i~i~~~~~~-~---~-------~~~~~~~~~i~~~~~~~~-----~~~l~~~~~dg~i~~wd~~~~~~~~-  357 (602)
                      +++++.||.|++|+.... .   .       .....+...+..++|.++     ++++++++.||.+++|++....... 
T Consensus        82 ~~s~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~  161 (393)
T d1sq9a_          82 VATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESN  161 (393)
T ss_dssp             EEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHH
T ss_pred             EEEEeCCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccc
Confidence            889999999999985411 0   0       011235566788888765     4678899999999999975432110 


Q ss_pred             EeeeccCCeeeeeccCCCeEEEeeCCCeEEEEEcCCCceeeEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCe
Q psy12697        358 QFSFHSAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDN  437 (602)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~  437 (602)
                      ....+...                   ...+.     ........+...+.+++|+|++ +|++|+.||.|++||+.+++
T Consensus       162 ~~~~~~~~-------------------~~~~~-----~~~~~~~~~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~~  216 (393)
T d1sq9a_         162 SLTLNWSP-------------------TLELQ-----GTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLR  216 (393)
T ss_dssp             HTTTCCCC-------------------EEEEE-----EEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTE
T ss_pred             eeeeeecc-------------------ceecc-----cceecccCCCCcEEEEEECCCC-EEEEEeCCCcEEEEeecccc
Confidence            00000000                   00000     0112223455668899999998 89999999999999999988


Q ss_pred             eeEeeccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCCC---eEEEEeCCCCce
Q psy12697        438 CVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDK---TTIIWDAASGQC  514 (602)
Q Consensus       438 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg---~i~iwd~~~~~~  514 (602)
                      ++..+...                            ..+.+|..+|.+++|+|||++|++|+.|+   .|++||++++++
T Consensus       217 ~~~~~~~~----------------------------~~l~~h~~~V~~l~~spdg~~l~sgs~D~t~~~i~lwd~~~g~~  268 (393)
T d1sq9a_         217 PLYNFESQ----------------------------HSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGER  268 (393)
T ss_dssp             EEEEEECC----------------------------C---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCE
T ss_pred             cccccccc----------------------------cccccccceEEEcccccccceeeeecCCCCcceeeeccccccee
Confidence            87665432                            23456899999999999999999999987   499999999988


Q ss_pred             eeeec-------------ccCCCeeEeeecCCc-eEEEeeCCCcEEEeecCCCCceeeeecccccceE----EEEe----
Q psy12697        515 EQQFS-------------FHSAPALDVDWQSNT-SFASCSTDQHIHVCKLHSDKPVKSFEGHTTGQLV----HSYK----  572 (602)
Q Consensus       515 ~~~~~-------------~~~~~v~~~~~s~~~-~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~----~~~~----  572 (602)
                      +..+.             +|.+.|++++|+||+ +|++++.|++|++||+++++++.++.+|......    ..+.    
T Consensus       269 ~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~~g~~~~~l~gH~~~v~~~~~~~~~~~~~~  348 (393)
T d1sq9a_         269 IGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGD  348 (393)
T ss_dssp             EEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSC
T ss_pred             eeeeccccccccceeeeecccCceeeeccCCCCCeeEEECCCCEEEEEECCCCCEEEEECCcCCcccCCccEEEECCCCC
Confidence            87764             799999999999999 9999999999999999999999999988643211    1111    


Q ss_pred             --cCCcEEEEEECCCC----------CeEEEeccCCeEEe
Q psy12697        573 --GTGGIFEVCWNSRG----------DKVGASASDGSVFK  600 (602)
Q Consensus       573 --~~~~i~~l~~spdg----------~~l~~~~~dg~v~i  600 (602)
                        ..+.+.++.|.+++          ..|++++.|+.|++
T Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ir~  388 (393)
T d1sq9a_         349 SLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRW  388 (393)
T ss_dssp             BCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEE
T ss_pred             EEEEcccceEEECccCceeccccCCCCEEEEEEcCCeEEE
Confidence              13567888887754          45888888998876

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=4.4e-30  Score=238.76  Aligned_cols=261  Identities=18%  Similarity=0.263  Sum_probs=211.7

Q ss_pred             cCCCCceeEEeeCCCCCeEEEEeCCCeEEEEcCCCcceeecccccCCeEEEEEccCCCEEEEEecCCcEEEEeCCCCcee
Q psy12697        277 VPSNKDVTSLDWNNNGSFLATGSYDGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCE  356 (602)
Q Consensus       277 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~  356 (602)
                      ..|..+|++++|+|    |++|+.||.|++||...    ....|...|.++.+++++ .+++++.|+++++|++...+  
T Consensus        10 ~gH~~~I~~l~~s~----l~sgs~Dg~v~~Wd~~~----~~~~h~~~V~~~~~~~~~-~~~s~s~D~~v~~w~~~~~~--   78 (287)
T d1pgua2          10 SGHNKGITALTVNP----LISGSYDGRIMEWSSSS----MHQDHSNLIVSLDNSKAQ-EYSSISWDDTLKVNGITKHE--   78 (287)
T ss_dssp             CCCSSCEEEEETTT----TEEEETTSCEEETTTTE----EECCCCSCEEEEECCSTT-CCEEEETTTEEEETTEEEEE--
T ss_pred             CCCCCceEEEEECc----EEEEeCCCeEEEEECCC----CCCCCCCCEEEEEecCCC-eEEEEeeccccccccccccc--
Confidence            35789999999987    99999999999999764    235799999999998764 58999999999999975432  


Q ss_pred             EEeeeccCCeeeeeccCCCeEEEeeCCCeEEEEEcCCCceeeEeccCCCCeEEEEECCCCCEEEEEECCC-eEEEEeCCC
Q psy12697        357 QQFSFHSAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDM-TLKIWSLDK  435 (602)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg-~i~iwd~~~  435 (602)
                           ....+..+.+.+++.+++...++.+.+|+..+++.+..+..+. .+  .+++|++..+++++.++ .+++|++..
T Consensus        79 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~v~~~~~~~v~~~~~~~  150 (287)
T d1pgua2          79 -----FGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNS-PG--SAVSLSQNYVAVGLEEGNTIQVFKLSD  150 (287)
T ss_dssp             -----CSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSS-CE--EEEEECSSEEEEEETTTSCEEEEETTE
T ss_pred             -----cccceeeeeeccCCceEEEeecccceeeeccceeeeeeccccc-ee--eeeeccCcceeeeccccceeeeeeccc
Confidence                 2344667788889998888999999999999998888776443 33  45677788888888875 699999876


Q ss_pred             CeeeEeeccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCcee
Q psy12697        436 DNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCE  515 (602)
Q Consensus       436 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~~~~~~~  515 (602)
                      .+....+..                                 .+...+++++|+|++++|++|+.||.|++||+.+++..
T Consensus       151 ~~~~~~~~~---------------------------------~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~  197 (287)
T d1pgua2         151 LEVSFDLKT---------------------------------PLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVK  197 (287)
T ss_dssp             EEEEEECSS---------------------------------CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEE
T ss_pred             cceeeeeee---------------------------------ccCCceeEEEeccCccccccccccccccceeecccccc
Confidence            554433321                                 25667888899999999999999999999999988876


Q ss_pred             e-eecccCCCeeEeeecCC----------c-eEEEeeCCCcEEEeecCCC-CceeeeecccccceEEEEecCCcEEEEEE
Q psy12697        516 Q-QFSFHSAPALDVDWQSN----------T-SFASCSTDQHIHVCKLHSD-KPVKSFEGHTTGQLVHSYKGTGGIFEVCW  582 (602)
Q Consensus       516 ~-~~~~~~~~v~~~~~s~~----------~-~l~~~~~d~~i~iw~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~l~~  582 (602)
                      . .+.+|..+|.+++|+|+          + ++++|+.|+.|++||++++ +.+..+.+|.           +.|++++|
T Consensus       198 ~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~h~-----------~~V~~v~~  266 (287)
T d1pgua2         198 TSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHK-----------DGVNNLLW  266 (287)
T ss_dssp             ECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSST-----------TCEEEEEE
T ss_pred             cccccccccccceeeecccccccccccCCCCeeEeecCCCeEEEEECCCCCeEEEEeCCCC-----------CCeEEEEE
Confidence            4 46789999999999874          3 7999999999999999764 4555555665           77999999


Q ss_pred             CCCCCeEEEeccCCeEEee
Q psy12697        583 NSRGDKVGASASDGSVFKN  601 (602)
Q Consensus       583 spdg~~l~~~~~dg~v~i~  601 (602)
                      +|++ .|++++.||+|+++
T Consensus       267 ~~~~-~l~s~g~D~~v~iW  284 (287)
T d1pgua2         267 ETPS-TLVSSGADACIKRW  284 (287)
T ss_dssp             EETT-EEEEEETTSCEEEE
T ss_pred             CCCC-EEEEEECCCeEEEE
Confidence            9987 58899999999985

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=3.5e-29  Score=233.06  Aligned_cols=274  Identities=22%  Similarity=0.401  Sum_probs=216.2

Q ss_pred             CCCCceeEEeeCCCCCeEEEEeCCCeEEEEcCC-CcceeecccccCCeEEEEEccCCCEEEEEecCCcEEEEeCCCCcee
Q psy12697        278 PSNKDVTSLDWNNNGSFLATGSYDGYARIWTSD-GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCE  356 (602)
Q Consensus       278 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~  356 (602)
                      .+...|+|++|  ++++||+|+.||.|++||++ ++....+.+|...|.+++|  ++++|++++.|+.+++|++..+...
T Consensus        13 ~~~~~V~c~~~--d~~~l~sgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~v~~--~~~~l~s~s~D~~i~~~~~~~~~~~   88 (293)
T d1p22a2          13 ETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEML   88 (293)
T ss_dssp             SSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEE
T ss_pred             CCCCCEEEEEE--cCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEeeeec--ccceeeccccccccccccccccccc
Confidence            34677888765  78899999999999999986 7788899999999999987  5789999999999999999998877


Q ss_pred             EEeeeccCCeeeeeccCCCeEEEeeCCCeEEEEEcCCCc---eeeEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEeC
Q psy12697        357 QQFSFHSAPALDVDWQSNTSFASCSTDQHIHVCKLHSDK---PVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSL  433 (602)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~---~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~  433 (602)
                      ............ .......++++..++.+.+|+.....   ....+..|...+..+.+.+  ..+++++.|+.|++||+
T Consensus        89 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~s~d~~i~~~d~  165 (293)
T d1p22a2          89 NTLIHHCEAVLH-LRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD--KYIVSASGDRTIKVWNT  165 (293)
T ss_dssp             EEECCCCSCEEE-EECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEET--TEEEEEETTSEEEEEET
T ss_pred             cccccccccccc-ccccccceeecccccceeEeeccccccccccccccccccccccceecc--cccccccCCCceeeecC
Confidence            766554444333 34456778999999999999998765   3455667888888877765  47889999999999999


Q ss_pred             CCCeeeEeeccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCc
Q psy12697        434 DKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQ  513 (602)
Q Consensus       434 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~~~~~  513 (602)
                      ++++.+..+..+...+..+.+                                    ++.++++++.||.|++||+.+++
T Consensus       166 ~~~~~~~~~~~~~~~v~~~~~------------------------------------~~~~l~~~~~dg~i~i~d~~~~~  209 (293)
T d1p22a2         166 STCEFVRTLNGHKRGIACLQY------------------------------------RDRLVVSGSSDNTIRLWDIECGA  209 (293)
T ss_dssp             TTCCEEEEEECCSSCEEEEEE------------------------------------ETTEEEEEETTSCEEEEETTTCC
T ss_pred             CCCcEEEEEcccccccccccC------------------------------------CCCeEEEecCCCEEEEEecccce
Confidence            999888887766555544443                                    34689999999999999999999


Q ss_pred             eeeeecccCCCeeEeeecCCc-eEEEeeCCCcEEEeecCCCCceeeeecccccceEEEEec-CCcEEEEEECCCCCeEEE
Q psy12697        514 CEQQFSFHSAPALDVDWQSNT-SFASCSTDQHIHVCKLHSDKPVKSFEGHTTGQLVHSYKG-TGGIFEVCWNSRGDKVGA  591 (602)
Q Consensus       514 ~~~~~~~~~~~v~~~~~s~~~-~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~l~~spdg~~l~~  591 (602)
                      .+..+.+|...+..+  ++++ .|++++.||.|++||+.+.......   .....+..+.. .+.|++++|+  +++|++
T Consensus       210 ~~~~~~~~~~~v~~~--~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~---~~~~~~~~~~~H~~~V~~v~~d--~~~l~s  282 (293)
T d1p22a2         210 CLRVLEGHEELVRCI--RFDNKRIVSGAYDGKIKVWDLVAALDPRAP---AGTLCLRTLVEHSGRVFRLQFD--EFQIVS  282 (293)
T ss_dssp             EEEEECCCSSCEEEE--ECCSSEEEEEETTSCEEEEEHHHHTSTTSC---TTTTEEEEECCCSSCCCCEEEC--SSCEEE
T ss_pred             eeeeecccceeeeec--cccceEEEEEcCCCEEEEEECCCCcccccc---CCceeeEEecCCCCCEEEEEEc--CCEEEE
Confidence            999999888888754  4556 9999999999999998654322111   11122333332 4679999984  678999


Q ss_pred             eccCCeEEee
Q psy12697        592 SASDGSVFKN  601 (602)
Q Consensus       592 ~~~dg~v~i~  601 (602)
                      ++.||+|+|+
T Consensus       283 ~s~Dg~i~iW  292 (293)
T d1p22a2         283 SSHDDTILIW  292 (293)
T ss_dssp             CCSSSEEEEE
T ss_pred             EecCCEEEEe
Confidence            9999999985

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.97  E-value=1.1e-30  Score=251.39  Aligned_cols=311  Identities=14%  Similarity=0.080  Sum_probs=232.4

Q ss_pred             EEEEcC-CCCEEEEeeCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEeeCCCCCeEEEEeCCC--e
Q psy12697        227 ICAWNP-VKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFLATGSYDG--Y  303 (602)
Q Consensus       227 ~~~~~~-~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg--~  303 (602)
                      .-.||| ||+++++++. |.|.+||+..+...                  ...|...|.+++|+|||++|++++.+.  .
T Consensus         7 ~~~fSP~dG~~~a~~~~-g~v~v~d~~~~~~~------------------~~~~~~~v~~~~~spDg~~l~~~~~~~g~~   67 (360)
T d1k32a3           7 AEDFSPLDGDLIAFVSR-GQAFIQDVSGTYVL------------------KVPEPLRIRYVRRGGDTKVAFIHGTREGDF   67 (360)
T ss_dssp             EEEEEECGGGCEEEEET-TEEEEECTTSSBEE------------------ECSCCSCEEEEEECSSSEEEEEEEETTEEE
T ss_pred             cccccCCCCCEEEEEEC-CeEEEEECCCCcEE------------------EccCCCCEEEEEECCCCCEEEEEEcCCCCE
Confidence            357999 8999998865 79999999765421                  124578899999999999998776553  7


Q ss_pred             EEEEcCCCcceeecccccCCeEEEEEccCCCEEEEEecCCcEEEEeCCCCceeEEeeeccCCeeeeeccCCCeEEE----
Q psy12697        304 ARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTSFAS----  379 (602)
Q Consensus       304 i~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----  379 (602)
                      |++||.++.....+..|...|.+++|+|++++|++++.++.+++|++.+++....+..+...+.+++|+|++..++    
T Consensus        68 v~v~d~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~  147 (360)
T d1k32a3          68 LGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFP  147 (360)
T ss_dssp             EEEEETTTCCEEECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEE
T ss_pred             EEEEECCCCcEEEeeCCCceEEeeeecccccccceeccccccccccccccceeeeeecccccccchhhccceeeeeeecc
Confidence            9999999888888999999999999999999999999999999999999999999999999999999999976543    


Q ss_pred             -------eeCCCeEEEEEcCCCceeeEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeee-------Eeeccc
Q psy12697        380 -------CSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCV-------HDLQAH  445 (602)
Q Consensus       380 -------~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~-------~~~~~~  445 (602)
                             +..++.+++|++.+++... +..+...+..++|+|+|++|++++.++.+++||.......       ..+..+
T Consensus       148 ~~~~~~~~~~~~~~~v~d~~~~~~~~-~~~~~~~~~~~~~spdg~~l~~~s~~~~~~~~d~~~~~~~~~~~~~~~~~~~~  226 (360)
T d1k32a3         148 LKHGETDGYVMQAIHVYDMEGRKIFA-ATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLI  226 (360)
T ss_dssp             ECSSTTCSCCEEEEEEEETTTTEEEE-CSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESS
T ss_pred             ccccceeeccccceeeeccccCceee-ecccccccccccccCCCCEEEEEeCCCceEcccccccceeeccccceEEEecc
Confidence                   2345579999999876544 4456778899999999999999999999999997654322       122222


Q ss_pred             cccEEEEEECCCCCCCCCCCcc------eeeeee------eccCCccCCeEEEEEccC---CCEEEEEeCCCeEEEEeCC
Q psy12697        446 NKEIYTIKWSPTGPETSNPNMS------LIFILK------STLGQHKGPIFALKWNKR---GNYILSAGVDKTTIIWDAA  510 (602)
Q Consensus       446 ~~~i~~~~~~~~~~~~~~~~~~------~~~~~~------~~~~~~~~~v~~i~~s~~---~~~l~s~~~dg~i~iwd~~  510 (602)
                      ......+.|++++.........      ....+.      ..+..+...+..+.+.+.   +.++++++.++.|++||+.
T Consensus       227 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~  306 (360)
T d1k32a3         227 PGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVK  306 (360)
T ss_dssp             TTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETT
T ss_pred             cCccccceECCCcCcccccceeecccccceeecccCcCceeEeeecCCCceEEEEEecCCCeeEEEecCCCCEEEEEECC
Confidence            3333333444444333221110      011100      112223334444444433   3467788889999999999


Q ss_pred             CCceeeeecccCCCeeEeeecCCc-eEEEeeCCCcEEEeecCCCCceeeeec
Q psy12697        511 SGQCEQQFSFHSAPALDVDWQSNT-SFASCSTDQHIHVCKLHSDKPVKSFEG  561 (602)
Q Consensus       511 ~~~~~~~~~~~~~~v~~~~~s~~~-~l~~~~~d~~i~iw~~~~~~~~~~~~~  561 (602)
                      +++..    .|.+.|.+++||||| +|++++.||.|++||+++++...++..
T Consensus       307 ~~~~~----~~~~~v~~~~~SpDG~~l~~~~~Dg~i~v~d~~~~~~~~~~~~  354 (360)
T d1k32a3         307 TRKVT----EVKNNLTDLRLSADRKTVMVRKDDGKIYTFPLEKPEDERTVET  354 (360)
T ss_dssp             TCCEE----EEEEEEEEEEECTTSCEEEEEETTSCEEEEESSCTTSCEECCC
T ss_pred             CCeEE----EecCCcCEEEECCCCCEEEEEECCCeEEEEECCCCCcceEEEe
Confidence            87643    344568999999999 999999999999999998877666543

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.97  E-value=1.2e-29  Score=248.52  Aligned_cols=354  Identities=9%  Similarity=-0.062  Sum_probs=255.2

Q ss_pred             eccceeeeecccceeeeeeeccCCceEEEEECCCCCeEEEeeCCceEEEEecCCceeE--EEeeccCceEEEEeCCCCCC
Q psy12697        118 HRLTLPLWDVERGECLNTLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLV--HSYKGTGGIFEVCWNSRGTP  195 (602)
Q Consensus       118 ~~~~i~vwd~~~~~~~~~l~~h~~~V~~~~~s~d~~~l~s~~~d~~v~iwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~  195 (602)
                      .+++|.|||..++++++++..|. .+..++|||||++|++++.|++|++||+.+++..  ..++                
T Consensus        40 d~g~v~v~D~~t~~v~~~~~~g~-~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~----------------  102 (432)
T d1qksa2          40 DAGQIALIDGSTYEIKTVLDTGY-AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIK----------------  102 (432)
T ss_dssp             TTTEEEEEETTTCCEEEEEECSS-CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEE----------------
T ss_pred             CCCEEEEEECCCCcEEEEEeCCC-CeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEe----------------
Confidence            46789999999999999999874 6999999999999999999999999999887632  2222                


Q ss_pred             CCCCCCccccccccccCCcceEeeCCCcceEEEEEcCCCCEE-EEeeCCCcEEEEeCCCCCCCCCccceEEEEEEecCCC
Q psy12697        196 PNPPESMEVDASIEIPQSKATKLIGHESEVFICAWNPVKDFL-ASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGG  274 (602)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l-~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~  274 (602)
                                           ...+|...+.+..|+|||++| ++++.++.|++||..+++.....     ..+......
T Consensus       103 ---------------------~~~~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~-----~~~~~~~~~  156 (432)
T d1qksa2         103 ---------------------IGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQ-----STRGMTYDE  156 (432)
T ss_dssp             ---------------------CCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEE-----ECCEECTTT
T ss_pred             ---------------------cCCCCCCeEEecccCCCCCEEEEEcCCCCeEEEEeCccccceeee-----ccCCccccc
Confidence                                 112355666777889999976 67888999999999887643211     111111122


Q ss_pred             cccCCCCceeEEeeCCCCCeEE-EEeCCCeEEEEcCCC-cceee-cccccCCeEEEEEccCCCEEEEEec-CCcEEEEeC
Q psy12697        275 TEVPSNKDVTSLDWNNNGSFLA-TGSYDGYARIWTSDG-SLKST-LGQHKGPIFALKWNKRGNYILSAGV-DKTTIIWDA  350 (602)
Q Consensus       275 ~~~~~~~~i~~~~~~~~~~~l~-~~~~dg~i~i~~~~~-~~~~~-~~~~~~~i~~~~~~~~~~~l~~~~~-dg~i~~wd~  350 (602)
                      ...........+.++|++..++ +...++.|.+|+... +.... ...+...+..+.|+|+|+++++++. ++.+.++|.
T Consensus       157 ~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~~~~~~~~~~~i~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~  236 (432)
T d1qksa2         157 QEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDT  236 (432)
T ss_dssp             CCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEET
T ss_pred             eeccCCCceeEEEECCCCCEEEEEEccCCeEEEEEccCCCcceEEEEcccCccccceECCCCCEEEEeccccceEEEeec
Confidence            2233456778899999998765 456679999999764 32222 2245567889999999998877765 567889999


Q ss_pred             CCCceeEEeeecc-----CCeeeeeccCCCeEEEee--CCCeEEEEEcCCCceeeEeccCCCCeEEEEECCCCCEEEEEE
Q psy12697        351 ASGQCEQQFSFHS-----APALDVDWQSNTSFASCS--TDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCS  423 (602)
Q Consensus       351 ~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~--~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  423 (602)
                      .+++....+....     .......+...+.+....  .++.+.+|+.....    ...|...+....++|++..+++++
T Consensus       237 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~lg~~~v~~~~~~~~~----~~~~~~~v~~~~~~~~g~~~~~~s  312 (432)
T d1qksa2         237 KEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPEG----HPDNAWKILDSFPALGGGSLFIKT  312 (432)
T ss_dssp             TTTEEEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTT----CTTTBTSEEEEEECSCSCCCCEEC
T ss_pred             ccceEEEEeccCccccccCcccceecCCCCceecccccCCceEEeccccccc----ccccccEEEEEEEcCCCCeEEEEe
Confidence            9888877664322     223333444444444333  37789999876543    245667799999999999999999


Q ss_pred             CCCeEEEEeCCCCeeeEeeccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCCCe
Q psy12697        424 DDMTLKIWSLDKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKT  503 (602)
Q Consensus       424 ~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~  503 (602)
                      .++..++|+......                                        |......+++ ||++.|++++.|+.
T Consensus       313 ~p~~~~lw~~~~~~~----------------------------------------~~~~~~sv~v-pDg~~la~~s~d~~  351 (432)
T d1qksa2         313 HPNSQYLYVDATLNP----------------------------------------EAEISGSVAV-FDIKAMTGDGSDPE  351 (432)
T ss_dssp             CTTCSEEEEECTTCS----------------------------------------SHHHHTCEEE-EEGGGCCCSSSCCC
T ss_pred             cCCccceeecccCCC----------------------------------------CCCeeeEEEE-EechhhcccccCCc
Confidence            999999997654321                                        1111223343 78899999999999


Q ss_pred             EEEEeCCCCceeeeecccCCCeeEeeecCCc-eEEEee-----CCCcEEEeecCCCCceeeeecc
Q psy12697        504 TIIWDAASGQCEQQFSFHSAPALDVDWQSNT-SFASCS-----TDQHIHVCKLHSDKPVKSFEGH  562 (602)
Q Consensus       504 i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~-~l~~~~-----~d~~i~iw~~~~~~~~~~~~~~  562 (602)
                      +++||+.++..+   ..|...+..++||||| +++.+.     .+|.|.|||..+.+....+.+.
T Consensus       352 ~k~w~~~~~~~l---~~~~~~v~~~~fS~DG~~v~~S~~~~~~~~g~i~i~D~~T~k~~~~i~~~  413 (432)
T d1qksa2         352 FKTLPIAEWAGI---TEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLELKHVIKDE  413 (432)
T ss_dssp             EEEECHHHHHTC---CSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTTEEEEEECCT
T ss_pred             eEeccccccccc---CCCCCcEEEeEECCCCCEEEEEEecCCCCCCcEEEEECCCceEEeEecCC
Confidence            999998665433   3577789999999999 664442     4688999999888776666543

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.97  E-value=1.8e-29  Score=248.20  Aligned_cols=345  Identities=12%  Similarity=0.073  Sum_probs=246.5

Q ss_pred             eccceeeeecccceeeeeeeccCCceEEEEECCCCCeEEEeeCCceEEEEecCCceeEEEeeccCceEEEEeCCCCCCCC
Q psy12697        118 HRLTLPLWDVERGECLNTLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKGTGGIFEVCWNSRGTPPN  197 (602)
Q Consensus       118 ~~~~i~vwd~~~~~~~~~l~~h~~~V~~~~~s~d~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  197 (602)
                      .+++|+|||+.+++.+.++..|. .+..++|||||++|++++.|++|++||+.+++.....+.                 
T Consensus        40 ~dg~v~vwD~~t~~~~~~l~~g~-~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i-----------------  101 (426)
T d1hzua2          40 DAGQIALVDGDSKKIVKVIDTGY-AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEI-----------------  101 (426)
T ss_dssp             TTTEEEEEETTTCSEEEEEECCS-SEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEE-----------------
T ss_pred             CCCEEEEEECCCCcEEEEEeCCC-CeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEE-----------------
Confidence            46899999999999999999885 589999999999999999999999999999875543221                 


Q ss_pred             CCCCccccccccccCCcceEeeCCCcceEEEEEcCCCCEEEEe-eCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcc
Q psy12697        198 PPESMEVDASIEIPQSKATKLIGHESEVFICAWNPVKDFLASG-SGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTE  276 (602)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~s~-~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (602)
                                        ....+|...+.+++|+|||++++++ ..++.+++||..++.....     ...+........
T Consensus       102 ------------------~~~~~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~-----~~~~~~~~~~~~  158 (426)
T d1hzua2         102 ------------------KIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQI-----VSTRGMTVDTQT  158 (426)
T ss_dssp             ------------------ECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEE-----EECCEECSSSCC
T ss_pred             ------------------eCCCCCcceEEeeeecCCCCEEEEeecCCCeEEEEcCCccceeEE-----eeccCCCcccee
Confidence                              1123466777888999999987554 5789999999988764321     111111111222


Q ss_pred             cCCCCceeEEeeCCCCCeEEEEeCC-CeEEEEcCCC--cceeecccccCCeEEEEEccCCCEEEEEe-cCCcEEEEeCCC
Q psy12697        277 VPSNKDVTSLDWNNNGSFLATGSYD-GYARIWTSDG--SLKSTLGQHKGPIFALKWNKRGNYILSAG-VDKTTIIWDAAS  352 (602)
Q Consensus       277 ~~~~~~i~~~~~~~~~~~l~~~~~d-g~i~i~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~~wd~~~  352 (602)
                      .........+.+++++..++....+ +.+.+++...  ........+...+..+.|+|++++++++. .+..+.+++..+
T Consensus       159 ~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~  238 (426)
T d1hzua2         159 YHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKD  238 (426)
T ss_dssp             EESCCCEEEEEECSSSSEEEEEETTTTEEEEEECSSSSSCEEEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTT
T ss_pred             ecCCCceeEEEECCCCCEEEEecCCCCeEEEEEeccccceeeEEeccCCccEeeeECCCCcEEEeeeecccceeeeeccc
Confidence            3345566778888888877766554 5666666542  22333446778899999999999888776 456788999999


Q ss_pred             CceeEEeeeccCC--eeeeecc-CC-CeE--EEeeCCCeEEEEEcCC-------CceeeEeccCCCCeEEEEECCCCCEE
Q psy12697        353 GQCEQQFSFHSAP--ALDVDWQ-SN-TSF--ASCSTDQHIHVCKLHS-------DKPVKSFEGHTNEVNAIKWDPQGLLL  419 (602)
Q Consensus       353 ~~~~~~~~~~~~~--~~~~~~~-~~-~~~--~~~~~~~~i~i~d~~~-------~~~~~~~~~~~~~i~~~~~~~~~~~l  419 (602)
                      ++...........  .....+. +. +..  +....++.+.+|+...       .+....+.+|...+..++|+|++++|
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sPdg~~l  318 (426)
T d1hzua2         239 RRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHL  318 (426)
T ss_dssp             TEEEEEEECSSCCCCSCCEEEEETTTEEEEEEECTTTCEEEEEECCTTTCTTTBTSEEEEEECSSSCCCCEECCTTCSEE
T ss_pred             ccEEEEeccCCcccccceeeeecCCCCceEEeccCCCceEEEeeccccccccccceEeEEEecCCCceeEEEcCCCCceE
Confidence            9888776543322  2222222 22 222  2344678888888654       36778899999999999999999999


Q ss_pred             EE-------EECCCeEEEEeCCCCeeeEeeccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCC
Q psy12697        420 AS-------CSDDMTLKIWSLDKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRG  492 (602)
Q Consensus       420 ~~-------~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~  492 (602)
                      ++       ++.|++|++||+++++...++..+...                         ..+..+...|.+++|||||
T Consensus       319 ~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~~~~~~-------------------------~~~~~~~~rv~~~~fSpDG  373 (426)
T d1hzua2         319 YVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEW-------------------------ADLGEGAKRVVQPEYNKRG  373 (426)
T ss_dssp             EECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHH-------------------------HCCCSSCCCEEEEEECSSS
T ss_pred             EEeecCCCCcccCCEEEEEECCCCCcCeEEeccchh-------------------------cccCCCCccEEEEEECCCC
Confidence            95       456789999999998776554322110                         0123456778899999999


Q ss_pred             CEEEEE-----eCCCeEEEEeCCCCceeeeecccCCCeeEeeecCCc
Q psy12697        493 NYILSA-----GVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNT  534 (602)
Q Consensus       493 ~~l~s~-----~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~  534 (602)
                      ++++.+     +.+|.|+|||..+++....+.++.      .++|+|
T Consensus       374 k~i~vs~~~~~~~~~~i~v~D~~T~k~~~~i~~~~------~~tp~G  414 (426)
T d1hzua2         374 DEVWFSVWNGKNDSSALVVVDDKTLKLKAVVKDPR------LITPTG  414 (426)
T ss_dssp             SEEEEEECCCTTSCCEEEEEETTTTEEEEEECCTT------CCSEEE
T ss_pred             CEEEEEEecCCCCCCeEEEEECCCCeEEEEECCCC------ccCCCc
Confidence            977532     357899999999999998888664      345666

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.97  E-value=1e-30  Score=251.80  Aligned_cols=320  Identities=11%  Similarity=0.074  Sum_probs=236.8

Q ss_pred             CCCCCcccCCcceeccceeeeecccceeeeeeeccCCceEEEEECCCCCeEEEeeCC--ceEEEEecCCceeEEEeeccC
Q psy12697        105 PSTGPAITNGEEVHRLTLPLWDVERGECLNTLTRHTEPVYSVAFSPDGKFLASGSFD--KCVHIWSARTGQLVHSYKGTG  182 (602)
Q Consensus       105 ~~~~~~~~~~~~~~~~~i~vwd~~~~~~~~~l~~h~~~V~~~~~s~d~~~l~s~~~d--~~v~iwd~~~~~~~~~~~~~~  182 (602)
                      |.++..++..   .++.|.+||.++++.++.  +|...|.+++|||||++|++++.+  ..|++||+++++..       
T Consensus        12 P~dG~~~a~~---~~g~v~v~d~~~~~~~~~--~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~-------   79 (360)
T d1k32a3          12 PLDGDLIAFV---SRGQAFIQDVSGTYVLKV--PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAE-------   79 (360)
T ss_dssp             ECGGGCEEEE---ETTEEEEECTTSSBEEEC--SCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEE-------
T ss_pred             CCCCCEEEEE---ECCeEEEEECCCCcEEEc--cCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcEE-------
Confidence            3345555543   346899999998887764  699999999999999999987755  37999999987754       


Q ss_pred             ceEEEEeCCCCCCCCCCCCccccccccccCCcceEeeCCCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCccc
Q psy12697        183 GIFEVCWNSRGTPPNPPESMEVDASIEIPQSKATKLIGHESEVFICAWNPVKDFLASGSGDSTARIWDMTDSTKKDPKEL  262 (602)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~  262 (602)
                                                        .+..|...|.+++|+|++++|++++.++.+++|++.++....    
T Consensus        80 ----------------------------------~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~----  121 (360)
T d1k32a3          80 ----------------------------------KFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTV----  121 (360)
T ss_dssp             ----------------------------------ECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEE----
T ss_pred             ----------------------------------EeeCCCceEEeeeecccccccceeccccccccccccccceee----
Confidence                                              345689999999999999999999999999999998765321    


Q ss_pred             eEEEEEEecCCCcccCCCCceeEEeeCCCCCeEEEEe----------CCCeEEEEcCCCcceeecccccCCeEEEEEccC
Q psy12697        263 QIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFLATGS----------YDGYARIWTSDGSLKSTLGQHKGPIFALKWNKR  332 (602)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~----------~dg~i~i~~~~~~~~~~~~~~~~~i~~~~~~~~  332 (602)
                        .          ...+...+.+++|+|+|++|+.+.          .++.+++|+..+.....+..+...+..+.|+|+
T Consensus       122 --~----------~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~spd  189 (360)
T d1k32a3         122 --I----------ERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDAD  189 (360)
T ss_dssp             --E----------EECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECSCSSSBEEEEEECTT
T ss_pred             --e----------eecccccccchhhccceeeeeeeccccccceeeccccceeeeccccCceeeecccccccccccccCC
Confidence              1          112356788999999999998654          345799999998777777788888999999999


Q ss_pred             CCEEEEEecCCcEEEEeCCCCce-------eEEeeeccCCeeeeeccCCCeEE-EeeCC-----CeEEEEEcCCCceeeE
Q psy12697        333 GNYILSAGVDKTTIIWDAASGQC-------EQQFSFHSAPALDVDWQSNTSFA-SCSTD-----QHIHVCKLHSDKPVKS  399 (602)
Q Consensus       333 ~~~l~~~~~dg~i~~wd~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-----~~i~i~d~~~~~~~~~  399 (602)
                      |++|++++.++.+.+||......       ......+......+.|++++..+ .+..+     ..+..++...+. ...
T Consensus       190 g~~l~~~s~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  268 (360)
T d1k32a3         190 SKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGD-YRM  268 (360)
T ss_dssp             SCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBC-EEE
T ss_pred             CCEEEEEeCCCceEcccccccceeeccccceEEEecccCccccceECCCcCcccccceeecccccceeecccCcCc-eeE
Confidence            99999999999999999765432       22333444555556666654322 22111     123333333333 233


Q ss_pred             eccCCCCeEEEEECCCC---CEEEEEECCCeEEEEeCCCCeeeEeeccccccEEEEEECCCCCCCCCCCcceeeeeeecc
Q psy12697        400 FEGHTNEVNAIKWDPQG---LLLASCSDDMTLKIWSLDKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTL  476 (602)
Q Consensus       400 ~~~~~~~i~~~~~~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  476 (602)
                      +..+.+.+..+.+.+.+   .++++++.++.|++||+.+++...                                    
T Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~------------------------------------  312 (360)
T d1k32a3         269 IIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTE------------------------------------  312 (360)
T ss_dssp             EEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEEE------------------------------------
T ss_pred             eeecCCCceEEEEEecCCCeeEEEecCCCCEEEEEECCCCeEEE------------------------------------
Confidence            44455555555555543   467888899999999998764321                                    


Q ss_pred             CCccCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeeecccCCCe
Q psy12697        477 GQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPA  525 (602)
Q Consensus       477 ~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v  525 (602)
                        |.+.|.+++|||||++|++++.||.|++||+++++...++..+..|+
T Consensus       313 --~~~~v~~~~~SpDG~~l~~~~~Dg~i~v~d~~~~~~~~~~~~d~~~~  359 (360)
T d1k32a3         313 --VKNNLTDLRLSADRKTVMVRKDDGKIYTFPLEKPEDERTVETDKRPL  359 (360)
T ss_dssp             --EEEEEEEEEECTTSCEEEEEETTSCEEEEESSCTTSCEECCCCSSCE
T ss_pred             --ecCCcCEEEECCCCCEEEEEECCCeEEEEECCCCCcceEEEeccccc
Confidence              23346778888899999999999999999999999888887666554

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=2.8e-30  Score=246.18  Aligned_cols=293  Identities=11%  Similarity=0.016  Sum_probs=206.7

Q ss_pred             eEeeCCCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEeeCCC-CCe
Q psy12697        216 TKLIGHESEVFICAWNPVKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNN-GSF  294 (602)
Q Consensus       216 ~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~  294 (602)
                      ..+.+|...|++++|+|++++|++++.||+|++||+........  ..           ....|..+|.+++|+|+ +.+
T Consensus         5 ~~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~--~~-----------~~~~h~~~V~~v~f~~~~~~~   71 (342)
T d1yfqa_           5 QIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVD--LL-----------QSLRYKHPLLCCNFIDNTDLQ   71 (342)
T ss_dssp             ECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEE--EE-----------EEEECSSCEEEEEEEESSSEE
T ss_pred             EcCCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceE--EE-----------EecCCCCCEEEEEEeCCCCCE
Confidence            34568999999999999999999999999999999977543211  11           01235788999999986 458


Q ss_pred             EEEEeCCCeEEEEcCCCc-ceeecc-cccCCeEEEEEccCCCEEEEEecCCcEEEEeCCCCceeEEeeeccCCeeeeecc
Q psy12697        295 LATGSYDGYARIWTSDGS-LKSTLG-QHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQ  372 (602)
Q Consensus       295 l~~~~~dg~i~i~~~~~~-~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~  372 (602)
                      |++|+.||.|++|+.... ...... .+........+.++...+++++.++.+++||++.+...........        
T Consensus        72 l~sg~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~--------  143 (342)
T d1yfqa_          72 IYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLN--------  143 (342)
T ss_dssp             EEEEETTSCEEEECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESC--------
T ss_pred             EEEcccccceeeeecccccccccccccccccccccccccccccccccccccccceeeccccccceeeecccc--------
Confidence            999999999999998743 333333 3334445666777888999999999999999765432221111000        


Q ss_pred             CCCeEEEeeCCCeEEEEEcCCCceeeEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeeeEeeccccccEEEE
Q psy12697        373 SNTSFASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHDLQAHNKEIYTI  452 (602)
Q Consensus       373 ~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~  452 (602)
                                                 ............+.+++..+++++.|+.|++||++...........       
T Consensus       144 ---------------------------~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~-------  189 (342)
T d1yfqa_         144 ---------------------------SNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEE-------  189 (342)
T ss_dssp             ---------------------------SSSSSSCCCEEEEEECSSEEEEEESTTEEEEEESSCCTTCCCEEEE-------
T ss_pred             ---------------------------cccccceeeeeeeeccCCceeeecCCCcEEEEecccCcccceeeee-------
Confidence                                       0001122345567778889999999999999999865433222110       


Q ss_pred             EECCCCCCCCCCCcceeeeeeeccCCccCCeEEEE-EccCCCEEEEEeCCCeEEEEeCCCCcee---------------e
Q psy12697        453 KWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALK-WNKRGNYILSAGVDKTTIIWDAASGQCE---------------Q  516 (602)
Q Consensus       453 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~-~s~~~~~l~s~~~dg~i~iwd~~~~~~~---------------~  516 (602)
                                              ..+...+.+.. ++.++..+++++.||.+.+|+.......               .
T Consensus       190 ------------------------~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~~~~~~  245 (342)
T d1yfqa_         190 ------------------------SGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNL  245 (342)
T ss_dssp             ------------------------CSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCT
T ss_pred             ------------------------cccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeeccccceeeeeeecc
Confidence                                    01122233333 3446788999999999999997654321               1


Q ss_pred             eecccCCCeeEeeecCCc-eEEEeeCCCcEEEeecCCCCceeeeecccccceEEEEecCCcEEEEEECCCCCeEEEeccC
Q psy12697        517 QFSFHSAPALDVDWQSNT-SFASCSTDQHIHVCKLHSDKPVKSFEGHTTGQLVHSYKGTGGIFEVCWNSRGDKVGASASD  595 (602)
Q Consensus       517 ~~~~~~~~v~~~~~s~~~-~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~d  595 (602)
                      ....|...+++++|+|++ +|++|+.||.|++||+++++.+..+..+            ..+..++|+|+|++|++++.|
T Consensus       246 ~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~~~l~~~~~~------------~~~~~~~~s~~~~~l~~a~sd  313 (342)
T d1yfqa_         246 KDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKF------------NEDSVVKIACSDNILCLATSD  313 (342)
T ss_dssp             TCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCC------------SSSEEEEEEECSSEEEEEEEC
T ss_pred             CCCcccccceeEEecCCccEEEEECCCCEEEEEECCCCcEEEEecCC------------CCCEEEEEEeCCCEEEEEEcC
Confidence            123466679999999999 9999999999999999888777665432            345567889999999999988


Q ss_pred             CeEE
Q psy12697        596 GSVF  599 (602)
Q Consensus       596 g~v~  599 (602)
                      ++++
T Consensus       314 d~~~  317 (342)
T d1yfqa_         314 DTFK  317 (342)
T ss_dssp             THHH
T ss_pred             CcEE
Confidence            7654

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.96  E-value=1.4e-27  Score=234.62  Aligned_cols=345  Identities=10%  Similarity=0.068  Sum_probs=225.4

Q ss_pred             ECCCCC--eEEEeeCCceEEEEecCCceeEEEeeccCceEEEEeCCCCCCCCCCCCccccccccccCCcceEeeCCCcce
Q psy12697        148 FSPDGK--FLASGSFDKCVHIWSARTGQLVHSYKGTGGIFEVCWNSRGTPPNPPESMEVDASIEIPQSKATKLIGHESEV  225 (602)
Q Consensus       148 ~s~d~~--~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~v  225 (602)
                      ++.|.+  ++++.+.||+|+|||+.+++.+.+++                                        .| ..+
T Consensus        26 ~~~d~~~~~~V~~~~dg~v~vwD~~t~~~~~~l~----------------------------------------~g-~~~   64 (426)
T d1hzua2          26 NDLDLPNLFSVTLRDAGQIALVDGDSKKIVKVID----------------------------------------TG-YAV   64 (426)
T ss_dssp             SCCCGGGEEEEEETTTTEEEEEETTTCSEEEEEE----------------------------------------CC-SSE
T ss_pred             ccCCCCeEEEEEEcCCCEEEEEECCCCcEEEEEe----------------------------------------CC-CCe
Confidence            445443  56788899999999999999986654                                        34 358


Q ss_pred             EEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEeeCCCCCeEEEE-eCCCeE
Q psy12697        226 FICAWNPVKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFLATG-SYDGYA  304 (602)
Q Consensus       226 ~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i  304 (602)
                      ..++|+|||++|++++.|+++++||+.+++..........           ..+...+.+++|+|||++++++ ..++.+
T Consensus        65 ~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~-----------~~~~~~~~s~~~spDG~~l~v~~~~~~~v  133 (426)
T d1hzua2          65 HISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIG-----------IEARSVESSKFKGYEDRYTIAGAYWPPQF  133 (426)
T ss_dssp             EEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECC-----------SEEEEEEECCSTTCTTTEEEEEEEESSEE
T ss_pred             eEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCC-----------CCCcceEEeeeecCCCCEEEEeecCCCeE
Confidence            8999999999999999999999999998864321111110           1123456778899999987555 578999


Q ss_pred             EEEcCC-CcceeecccccCCeEEEEEccCCCE-EEEEecCCcEEEEeCCCCceeEEeeeccCCeeeeeccCCCeEEEeeC
Q psy12697        305 RIWTSD-GSLKSTLGQHKGPIFALKWNKRGNY-ILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTSFASCST  382 (602)
Q Consensus       305 ~i~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~-l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  382 (602)
                      .+||.. +........|...+....+.+++.. .++.+.|+...++....                              
T Consensus       134 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~------------------------------  183 (426)
T d1hzua2         134 AIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKE------------------------------  183 (426)
T ss_dssp             EEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETT------------------------------
T ss_pred             EEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCC------------------------------
Confidence            999977 5556666667666666777776654 34555666555554332                              


Q ss_pred             CCeEEEEEcCCCce-eeEeccCCCCeEEEEECCCCCEEEEEEC-CCeEEEEeCCCCeeeEeecccccc--EEEEEECCCC
Q psy12697        383 DQHIHVCKLHSDKP-VKSFEGHTNEVNAIKWDPQGLLLASCSD-DMTLKIWSLDKDNCVHDLQAHNKE--IYTIKWSPTG  458 (602)
Q Consensus       383 ~~~i~i~d~~~~~~-~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~--i~~~~~~~~~  458 (602)
                      .+.+.+++...... ......+...+..+.|+|++++++++.. +..+.+++..+++.+.........  .....+    
T Consensus       184 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----  259 (426)
T d1hzua2         184 TGKVLLVNYKDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF----  259 (426)
T ss_dssp             TTEEEEEECSSSSSCEEEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEE----
T ss_pred             CCeEEEEEeccccceeeEEeccCCccEeeeECCCCcEEEeeeecccceeeeecccccEEEEeccCCcccccceeee----
Confidence            22233333333221 1223356677899999999998888764 567999999998887665432211  001111    


Q ss_pred             CCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeeecccCCCeeEeeecCCc-eEE
Q psy12697        459 PETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNT-SFA  537 (602)
Q Consensus       459 ~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~-~l~  537 (602)
                                       ...+...+....+++++...+.+.....+   ....++....+.+|...+..++|+||+ +|+
T Consensus       260 -----------------~~~~~~~~~~~~~~~d~~v~~~~~~~~~~---~~~~~~~~~~l~g~~~~v~~v~~sPdg~~l~  319 (426)
T d1hzua2         260 -----------------VHPKYGPVWSTSHLGDGSISLIGTDPKNH---PQYAWKKVAELQGQGGGSLFIKTHPKSSHLY  319 (426)
T ss_dssp             -----------------EETTTEEEEEEECTTTCEEEEEECCTTTC---TTTBTSEEEEEECSSSCCCCEECCTTCSEEE
T ss_pred             -----------------ecCCCCceEEeccCCCceEEEeecccccc---ccccceEeEEEecCCCceeEEEcCCCCceEE
Confidence                             11123333334444444443433333322   223357788899999999999999999 777


Q ss_pred             E-------eeCCCcEEEeecCCCCceeeeecccccceEEEEecCCcEEEEEECCCCCeEEEe-----ccCCeEEe
Q psy12697        538 S-------CSTDQHIHVCKLHSDKPVKSFEGHTTGQLVHSYKGTGGIFEVCWNSRGDKVGAS-----ASDGSVFK  600 (602)
Q Consensus       538 ~-------~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~-----~~dg~v~i  600 (602)
                      +       ++.|++|+|||+.++++..++.......  ..-.+...+.+++|||||++++++     +.+|.|+|
T Consensus       320 v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~~~~~~~--~~~~~~~rv~~~~fSpDGk~i~vs~~~~~~~~~~i~v  392 (426)
T d1hzua2         320 VDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWA--DLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVV  392 (426)
T ss_dssp             ECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHH--CCCSSCCCEEEEEECSSSSEEEEEECCCTTSCCEEEE
T ss_pred             EeecCCCCcccCCEEEEEECCCCCcCeEEeccchhc--ccCCCCccEEEEEECCCCCEEEEEEecCCCCCCeEEE
Confidence            3       5568899999999998776654322110  011124569999999999977543     35777776

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.95  E-value=6.8e-26  Score=221.58  Aligned_cols=338  Identities=11%  Similarity=0.034  Sum_probs=238.6

Q ss_pred             CCeEEEeeCCceEEEEecCCceeEEEeeccCceEEEEeCCCCCCCCCCCCccccccccccCCcceEeeCCCcceEEEEEc
Q psy12697        152 GKFLASGSFDKCVHIWSARTGQLVHSYKGTGGIFEVCWNSRGTPPNPPESMEVDASIEIPQSKATKLIGHESEVFICAWN  231 (602)
Q Consensus       152 ~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~  231 (602)
                      .-++++.+.||+|.|||.++++.+..++                                        .| ..+..++|+
T Consensus        32 ~~~~v~~~d~g~v~v~D~~t~~v~~~~~----------------------------------------~g-~~~~~v~fS   70 (432)
T d1qksa2          32 NLFSVTLRDAGQIALIDGSTYEIKTVLD----------------------------------------TG-YAVHISRLS   70 (432)
T ss_dssp             GEEEEEETTTTEEEEEETTTCCEEEEEE----------------------------------------CS-SCEEEEEEC
T ss_pred             cEEEEEEcCCCEEEEEECCCCcEEEEEe----------------------------------------CC-CCeeEEEEC
Confidence            3356889999999999999999987654                                        23 358899999


Q ss_pred             CCCCEEEEeeCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEeeCCCCCeE-EEEeCCCeEEEEcCC
Q psy12697        232 PVKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFL-ATGSYDGYARIWTSD  310 (602)
Q Consensus       232 ~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l-~~~~~dg~i~i~~~~  310 (602)
                      |||+++++++.|+++++||+.+++...........           .+...+.+..|+|||++| +++..++.|++||..
T Consensus        71 pDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~-----------~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~  139 (432)
T d1qksa2          71 ASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGS-----------EARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGE  139 (432)
T ss_dssp             TTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCS-----------EEEEEEECCSTTCTTTEEEEEEEETTEEEEEETT
T ss_pred             CCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCC-----------CCCCeEEecccCCCCCEEEEEcCCCCeEEEEeCc
Confidence            99999999999999999999887643221111100           112446667889999986 677889999999976


Q ss_pred             -Ccceeeccc-----------ccCCeEEEEEccCCCEEE-EEecCCcEEEEeCCCCceeEEeee-ccCCeeeeeccCCCe
Q psy12697        311 -GSLKSTLGQ-----------HKGPIFALKWNKRGNYIL-SAGVDKTTIIWDAASGQCEQQFSF-HSAPALDVDWQSNTS  376 (602)
Q Consensus       311 -~~~~~~~~~-----------~~~~i~~~~~~~~~~~l~-~~~~dg~i~~wd~~~~~~~~~~~~-~~~~~~~~~~~~~~~  376 (602)
                       ++....+..           +......+.++|++..++ +...++.+.+||..+.+....... ....+..+.++|++.
T Consensus       140 t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~~~~~~~~~~~i~~g~~~~~~~~spdg~  219 (432)
T d1qksa2         140 TLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHR  219 (432)
T ss_dssp             TCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSC
T ss_pred             cccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCeEEEEEccCCCcceEEEEcccCccccceECCCCC
Confidence             444443332           345567889999998765 556679999999998876654443 345678899999976


Q ss_pred             -EEEe-eCCCeEEEEEcCCCceeeEecc-----CCCCeEEEEECCCCCEEEEEE-CCCeEEEEeCCCCeeeEeecccccc
Q psy12697        377 -FASC-STDQHIHVCKLHSDKPVKSFEG-----HTNEVNAIKWDPQGLLLASCS-DDMTLKIWSLDKDNCVHDLQAHNKE  448 (602)
Q Consensus       377 -~~~~-~~~~~i~i~d~~~~~~~~~~~~-----~~~~i~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~  448 (602)
                       ++++ ..++.+.++|..+++.+..+..     |........+...+...++.. .++.|.+|+.....           
T Consensus       220 ~~~va~~~~~~v~v~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~lg~~~v~~~~~~~~~-----------  288 (432)
T d1qksa2         220 YFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPEG-----------  288 (432)
T ss_dssp             EEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTT-----------
T ss_pred             EEEEeccccceEEEeecccceEEEEeccCccccccCcccceecCCCCceecccccCCceEEeccccccc-----------
Confidence             3444 4567899999998887765542     334455555655555555543 37788888765421           


Q ss_pred             EEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeeecccCCCeeEe
Q psy12697        449 IYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDV  528 (602)
Q Consensus       449 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~  528 (602)
                                                 ...|...+....++|++..+++++.+...++|+..+..      .|.....++
T Consensus       289 ---------------------------~~~~~~~v~~~~~~~~g~~~~~~s~p~~~~lw~~~~~~------~~~~~~~sv  335 (432)
T d1qksa2         289 ---------------------------HPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLN------PEAEISGSV  335 (432)
T ss_dssp             ---------------------------CTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTC------SSHHHHTCE
T ss_pred             ---------------------------ccccccEEEEEEEcCCCCeEEEEecCCccceeecccCC------CCCCeeeEE
Confidence                                       11244556677778888889999999999999865433      233333455


Q ss_pred             eecCCc-eEEEeeCCCcEEEeecCCCCceeeeecccccceEEEEecCCcEEEEEECCCCCeEEEec-----cCCeEEe
Q psy12697        529 DWQSNT-SFASCSTDQHIHVCKLHSDKPVKSFEGHTTGQLVHSYKGTGGIFEVCWNSRGDKVGASA-----SDGSVFK  600 (602)
Q Consensus       529 ~~s~~~-~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~-----~dg~v~i  600 (602)
                      ++ ||+ .+++++.|+.+++|++.++..+.              ++...+.+++|||||++|+++.     .+|.|.|
T Consensus       336 ~v-pDg~~la~~s~d~~~k~w~~~~~~~l~--------------~~~~~v~~~~fS~DG~~v~~S~~~~~~~~g~i~i  398 (432)
T d1qksa2         336 AV-FDIKAMTGDGSDPEFKTLPIAEWAGIT--------------EGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVV  398 (432)
T ss_dssp             EE-EEGGGCCCSSSCCCEEEECHHHHHTCC--------------SSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEE
T ss_pred             EE-EechhhcccccCCceEecccccccccC--------------CCCCcEEEeEECCCCCEEEEEEecCCCCCCcEEE
Confidence            55 899 99999999999999975432221              1235688999999999886653     3566654

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.93  E-value=4.7e-24  Score=202.52  Aligned_cols=282  Identities=10%  Similarity=0.062  Sum_probs=205.3

Q ss_pred             CeEEEeeCCceEEEEecCCceeEEEeeccCceEEEEeCCCCCCCCCCCCccccccccccCCcceEeeCCCcceEEEEEcC
Q psy12697        153 KFLASGSFDKCVHIWSARTGQLVHSYKGTGGIFEVCWNSRGTPPNPPESMEVDASIEIPQSKATKLIGHESEVFICAWNP  232 (602)
Q Consensus       153 ~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~  232 (602)
                      +|+++++.|++|.|||+++++.+..++.                                      ..+...+.+++|+|
T Consensus         2 ~~~vt~~~d~~v~v~D~~s~~~~~~i~~--------------------------------------~~~~~~~~~i~~sp   43 (337)
T d1pbyb_           2 DYILAPARPDKLVVIDTEKMAVDKVITI--------------------------------------ADAGPTPMVPMVAP   43 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEEC--------------------------------------TTCTTCCCCEEECT
T ss_pred             eEEEEEcCCCEEEEEECCCCeEEEEEEC--------------------------------------CCCCCCccEEEECC
Confidence            5899999999999999999998876542                                      22345577899999


Q ss_pred             CCCEEE-EeeCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEeeCCCCCeEEEEeC-----------
Q psy12697        233 VKDFLA-SGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFLATGSY-----------  300 (602)
Q Consensus       233 ~~~~l~-s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-----------  300 (602)
                      ||++++ +++.++.|.+||+.+++.........           ...+...+..++|+|++++++++..           
T Consensus        44 Dg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~-----------~~~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~  112 (337)
T d1pbyb_          44 GGRIAYATVNKSESLVKIDLVTGETLGRIDLST-----------PEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEV  112 (337)
T ss_dssp             TSSEEEEEETTTTEEEEEETTTCCEEEEEECCB-----------TTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEE
T ss_pred             CCCEEEEEECCCCeEEEEECCCCcEEEEEecCC-----------CcccccceeeEEEcCCCcEEEEeecCCcceeeeccc
Confidence            999874 66789999999999876432211110           0011234567999999999988764           


Q ss_pred             -CCeEEEEcCCCcceeecccccCCeEEEEEccCCCEEEEEecCCcEEEEeCCCCceeEEeeeccCCeeeeeccCC-----
Q psy12697        301 -DGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSN-----  374 (602)
Q Consensus       301 -dg~i~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~-----  374 (602)
                       ++.+.+||...........+...+..++|+|+|+++++++.  .+.+||..+++....+..+..... ..+.++     
T Consensus       113 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~--~~~~~d~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  189 (337)
T d1pbyb_         113 QPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGLGR--DLHVMDPEAGTLVEDKPIQSWEAE-TYAQPDVLAVW  189 (337)
T ss_dssp             CCCEEEEEETTTTEEEEEEECCSSCCCEEECTTSSCEEEESS--SEEEEETTTTEEEEEECSTTTTTT-TBCCCBCCCCC
T ss_pred             cccceeeccccCCeEEEeccccCCceEEEEcCCCCEEEEEcC--CcceeeeecCcEEEEeecCCcccc-ceecCCcceee
Confidence             56788888775444443345567889999999999998864  478899999988877655432211 111111     


Q ss_pred             ------Ce--------------EEEeeCCCeEEEEEcCCCceee-EeccCCCCeEEEEECCCCCEEEEEECCCeEEEEeC
Q psy12697        375 ------TS--------------FASCSTDQHIHVCKLHSDKPVK-SFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSL  433 (602)
Q Consensus       375 ------~~--------------~~~~~~~~~i~i~d~~~~~~~~-~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~  433 (602)
                            ..              ......++.+.+|+..+++... .+..+...+..+.++|++.+++.+  ++.|++||+
T Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~v~d~  267 (337)
T d1pbyb_         190 NQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDL  267 (337)
T ss_dssp             CCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEET
T ss_pred             ccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEEEEecCCCcceEEEEecccceEEEEc--cccEEEEEC
Confidence                  11              1112334568899998887544 455677788899999999998776  478999999


Q ss_pred             CCCeeeEeeccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCc
Q psy12697        434 DKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQ  513 (602)
Q Consensus       434 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~~~~~  513 (602)
                      .+++.+..+.                                   +...+.+++|+|||++|++++.|+.|++||.++++
T Consensus       268 ~~~~~~~~~~-----------------------------------~~~~~~~~~~s~dG~~l~v~~~~~~i~v~D~~t~~  312 (337)
T d1pbyb_         268 EKNASIKRVP-----------------------------------LPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLE  312 (337)
T ss_dssp             TTTEEEEEEE-----------------------------------CSSCCCEEEECTTSCEEEEESBSSEEEEEETTTCC
T ss_pred             CCCcEEEEEc-----------------------------------CCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCc
Confidence            9998877654                                   23456788889999999999999999999999999


Q ss_pred             eeeeecccCC
Q psy12697        514 CEQQFSFHSA  523 (602)
Q Consensus       514 ~~~~~~~~~~  523 (602)
                      .+.++.....
T Consensus       313 ~v~~i~~~g~  322 (337)
T d1pbyb_         313 KKGQVDLPGN  322 (337)
T ss_dssp             EEEEEECGGG
T ss_pred             EEEEEECCCC
Confidence            9988775433

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.93  E-value=8.5e-23  Score=190.43  Aligned_cols=270  Identities=9%  Similarity=0.080  Sum_probs=202.4

Q ss_pred             EEeeCCceEEEEecCCceeEEEeeccCceEEEEeCCCCCCCCCCCCccccccccccCCcceEeeCCCcceEEEEEcCCCC
Q psy12697        156 ASGSFDKCVHIWSARTGQLVHSYKGTGGIFEVCWNSRGTPPNPPESMEVDASIEIPQSKATKLIGHESEVFICAWNPVKD  235 (602)
Q Consensus       156 ~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~  235 (602)
                      ++++.|++|.|||+++++.+.+++.                                         ...+..++|+|||+
T Consensus         6 V~~~~~~~v~v~D~~t~~~~~~i~~-----------------------------------------g~~p~~va~spdG~   44 (301)
T d1l0qa2           6 IANSESDNISVIDVTSNKVTATIPV-----------------------------------------GSNPMGAVISPDGT   44 (301)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEEEC-----------------------------------------SSSEEEEEECTTSS
T ss_pred             EEECCCCEEEEEECCCCeEEEEEEC-----------------------------------------CCCceEEEEeCCCC
Confidence            4667899999999999998876642                                         23467899999999


Q ss_pred             EEE-EeeCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEeeCCCCCeEEE-EeCCCeEEEEcCCCcc
Q psy12697        236 FLA-SGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFLAT-GSYDGYARIWTSDGSL  313 (602)
Q Consensus       236 ~l~-s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~-~~~dg~i~i~~~~~~~  313 (602)
                      +|+ +++.++.|++||+.+++....                 .+....+..++|++++..+++ +..++.+.+|+.....
T Consensus        45 ~l~v~~~~~~~i~v~d~~t~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  107 (301)
T d1l0qa2          45 KVYVANAHSNDVSIIDTATNNVIAT-----------------VPAGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNT  107 (301)
T ss_dssp             EEEEEEGGGTEEEEEETTTTEEEEE-----------------EECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTE
T ss_pred             EEEEEECCCCEEEEEECCCCceeee-----------------eeccccccccccccccccccccccccceeeecccccce
Confidence            874 667789999999987653211                 011345788999999986655 4566789999987554


Q ss_pred             eeecccccCCeEEEEEccCCCEEEE-EecCCcEEEEeCCCCceeEEeeeccCCeeeeeccCCCe-EEEee-CCCeEEEEE
Q psy12697        314 KSTLGQHKGPIFALKWNKRGNYILS-AGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTS-FASCS-TDQHIHVCK  390 (602)
Q Consensus       314 ~~~~~~~~~~i~~~~~~~~~~~l~~-~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~i~i~d  390 (602)
                      ......+.....++.|+|+++.++. +..++.+.+|+..++.....+..+. .+..+.+.+++. ++++. ..+.+.+|+
T Consensus       108 ~~~~~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (301)
T d1l0qa2         108 VAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGR-SPKGIAVTPDGTKVYVANFDSMSISVID  186 (301)
T ss_dssp             EEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECCS-SEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred             eeeeccccccceEEEeecCCCeeeeeeccccceeeeeccccceeeecccCC-CceEEEeeccccceeeeccccccccccc
Confidence            4444445567889999999998764 5567889999999998888776544 456677777643 44444 456777888


Q ss_pred             cCCCceeeEeccCCCCeEEEEECCCCCEEEEEEC---CCeEEEEeCCCCeeeEeeccccccEEEEEECCCCCCCCCCCcc
Q psy12697        391 LHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSD---DMTLKIWSLDKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMS  467 (602)
Q Consensus       391 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~  467 (602)
                      ....+....... ...+..++++++++.+++++.   ++.|++||+.+++.+..+..+                      
T Consensus       187 ~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~~~~~~~~~----------------------  243 (301)
T d1l0qa2         187 TVTNSVIDTVKV-EAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVG----------------------  243 (301)
T ss_dssp             TTTTEEEEEEEC-SSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECC----------------------
T ss_pred             ccceeeeecccc-cCCcceeeccccccccccccccceeeeeeeeecCCCeEEEEEcCC----------------------
Confidence            877776666553 455788999999998876653   468999999998887665432                      


Q ss_pred             eeeeeeeccCCccCCeEEEEEccCCCEE-EEEeCCCeEEEEeCCCCceeeeecc
Q psy12697        468 LIFILKSTLGQHKGPIFALKWNKRGNYI-LSAGVDKTTIIWDAASGQCEQQFSF  520 (602)
Q Consensus       468 ~~~~~~~~~~~~~~~v~~i~~s~~~~~l-~s~~~dg~i~iwd~~~~~~~~~~~~  520 (602)
                                   ..+.+++|+|||++| ++++.|+.|++||+++++.+.++..
T Consensus       244 -------------~~~~~va~spdg~~l~va~~~~~~i~v~D~~t~~~~~~~~v  284 (301)
T d1l0qa2         244 -------------PDPAGIAVTPDGKKVYVALSFCNTVSVIDTATNTITATMAV  284 (301)
T ss_dssp             -------------SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC
T ss_pred             -------------CCEEEEEEeCCCCEEEEEECCCCeEEEEECCCCeEEEEEeC
Confidence                         235677888899876 5777899999999999999888763

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.93  E-value=8.6e-23  Score=190.38  Aligned_cols=265  Identities=13%  Similarity=0.092  Sum_probs=200.0

Q ss_pred             ccceeeeecccceeeeeeeccCCceEEEEECCCCCeEE-EeeCCceEEEEecCCceeEEEeeccCceEEEEeCCCCCCCC
Q psy12697        119 RLTLPLWDVERGECLNTLTRHTEPVYSVAFSPDGKFLA-SGSFDKCVHIWSARTGQLVHSYKGTGGIFEVCWNSRGTPPN  197 (602)
Q Consensus       119 ~~~i~vwd~~~~~~~~~l~~h~~~V~~~~~s~d~~~l~-s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  197 (602)
                      +++|.|||+++++.++++... ..+..++|+|||++|+ +++.++.|++||+.+++.+..++.                 
T Consensus        11 ~~~v~v~D~~t~~~~~~i~~g-~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~-----------------   72 (301)
T d1l0qa2          11 SDNISVIDVTSNKVTATIPVG-SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPA-----------------   72 (301)
T ss_dssp             TTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEEC-----------------
T ss_pred             CCEEEEEECCCCeEEEEEECC-CCceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeeec-----------------
Confidence            468999999999999999755 4578999999999874 667899999999999998865542                 


Q ss_pred             CCCCccccccccccCCcceEeeCCCcceEEEEEcCCCCEEE-EeeCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcc
Q psy12697        198 PPESMEVDASIEIPQSKATKLIGHESEVFICAWNPVKDFLA-SGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTE  276 (602)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~-s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (602)
                                             + ..+..++|++++..++ ++..++.+.+|+..+++....                 
T Consensus        73 -----------------------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------  111 (301)
T d1l0qa2          73 -----------------------G-SSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGT-----------------  111 (301)
T ss_dssp             -----------------------S-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEE-----------------
T ss_pred             -----------------------c-ccccccccccccccccccccccceeeecccccceeeee-----------------
Confidence                                   3 2457789999987655 455678899999887643211                 


Q ss_pred             cCCCCceeEEeeCCCCCeEEE-EeCCCeEEEEcCCCcceeecccccCCeEEEEEccCCCEEEEEecC-CcEEEEeCCCCc
Q psy12697        277 VPSNKDVTSLDWNNNGSFLAT-GSYDGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVD-KTTIIWDAASGQ  354 (602)
Q Consensus       277 ~~~~~~i~~~~~~~~~~~l~~-~~~dg~i~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-g~i~~wd~~~~~  354 (602)
                      ........++.|+|++..++. +..++.+.+|+...........+...+..+.++|+++.+++++.+ +.+.+|+....+
T Consensus       112 ~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (301)
T d1l0qa2         112 VKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNS  191 (301)
T ss_dssp             EECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTE
T ss_pred             ccccccceEEEeecCCCeeeeeeccccceeeeeccccceeeecccCCCceEEEeeccccceeeeccccccccccccccee
Confidence            112456789999999988755 455788999998755444444455668899999999998887765 567777777766


Q ss_pred             eeEEeeeccCCeeeeeccCCCe-EEEe---eCCCeEEEEEcCCCceeeEeccCCCCeEEEEECCCCCEE-EEEECCCeEE
Q psy12697        355 CEQQFSFHSAPALDVDWQSNTS-FASC---STDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLL-ASCSDDMTLK  429 (602)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~-~~~~---~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l-~~~~~dg~i~  429 (602)
                      ........ ..+..+.+.+++. ++++   ..++.|.+||+.+++.+..+..+ ..+.+++|+|||++| ++++.|+.|+
T Consensus       192 ~~~~~~~~-~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~~~~~~~~~-~~~~~va~spdg~~l~va~~~~~~i~  269 (301)
T d1l0qa2         192 VIDTVKVE-AAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVG-PDPAGIAVTPDGKKVYVALSFCNTVS  269 (301)
T ss_dssp             EEEEEECS-SEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECC-SSEEEEEECTTSSEEEEEETTTTEEE
T ss_pred             eeeccccc-CCcceeeccccccccccccccceeeeeeeeecCCCeEEEEEcCC-CCEEEEEEeCCCCEEEEEECCCCeEE
Confidence            66655544 3455667777644 3333   23478999999999988877644 568999999999987 5677899999


Q ss_pred             EEeCCCCeeeEeecc
Q psy12697        430 IWSLDKDNCVHDLQA  444 (602)
Q Consensus       430 iwd~~~~~~~~~~~~  444 (602)
                      +||+.+++.+.++..
T Consensus       270 v~D~~t~~~~~~~~v  284 (301)
T d1l0qa2         270 VIDTATNTITATMAV  284 (301)
T ss_dssp             EEETTTTEEEEEEEC
T ss_pred             EEECCCCeEEEEEeC
Confidence            999999998888753

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.92  E-value=1.8e-23  Score=199.18  Aligned_cols=312  Identities=7%  Similarity=0.001  Sum_probs=212.1

Q ss_pred             EEECCCCCeEEEeeCCceEEEEecCCceeEEEeeccCceEEEEeCCCCCCCCCCCCccccccccccCCcceEeeCCCcce
Q psy12697        146 VAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKGTGGIFEVCWNSRGTPPNPPESMEVDASIEIPQSKATKLIGHESEV  225 (602)
Q Consensus       146 ~~~s~d~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~v  225 (602)
                      ++|++++++|++++.|++|.|||+.+++.+.+++.                                       .|...+
T Consensus         2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~---------------------------------------~~~~~p   42 (346)
T d1jmxb_           2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVM---------------------------------------PDKFGP   42 (346)
T ss_dssp             CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEEC---------------------------------------SSCCSS
T ss_pred             ccCCCCCcEEEEEcCCCEEEEEECCCCCEEEEEEc---------------------------------------CCCCCc
Confidence            47899999999999999999999999998876542                                       245567


Q ss_pred             EEEEEcCCCCEEE-EeeCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEeeCCCCCeEEEEe-----
Q psy12697        226 FICAWNPVKDFLA-SGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFLATGS-----  299 (602)
Q Consensus       226 ~~~~~~~~~~~l~-s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-----  299 (602)
                      .+++|+|||++++ +++.++.|.+||+.+++......          ...........+..++|+|||++++++.     
T Consensus        43 ~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~----------~~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~  112 (346)
T d1jmxb_          43 GTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHAN----------LSSVPGEVGRSMYSFAISPDGKEVYATVNPTQR  112 (346)
T ss_dssp             CEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE----------SCCSTTEEEECSSCEEECTTSSEEEEEEEEEEE
T ss_pred             ceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeeec----------ccccccccCCceEEEEEecCCCEEEEEecCCcc
Confidence            7899999999874 55678999999998765421111          0000111123466899999999998775     


Q ss_pred             -------CCCeEEEEcCC-Ccceeeccc--ccCCeEEEEEccCCCEEEEEecCCcEEEEeCCCCceeEEeeeccCCeeee
Q psy12697        300 -------YDGYARIWTSD-GSLKSTLGQ--HKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDV  369 (602)
Q Consensus       300 -------~dg~i~i~~~~-~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~  369 (602)
                             .++.+.+|+.. +.....+..  ....+..+.+++++..+++   ++.+.+|++.+++....+..+. ....+
T Consensus       113 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~-~~~~~  188 (346)
T d1jmxb_         113 LNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVA---GPDIYKMDVKTGKYTVALPLRN-WNRKG  188 (346)
T ss_dssp             CSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSCEEEE---SSSEEEECTTTCCEEEEECSTT-CCCTT
T ss_pred             eeeeeccCcceEEEEecccceeeeEEEeeeccCceEEEEecCCCEEEEe---CCcceEEEccCCCEEEEEecCC-Cccce
Confidence                   35678888765 232222222  2234556677777765543   3568999999998888776543 33455


Q ss_pred             eccCCCe--EEEeeCCCeEEEEEcCCCceeeEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeeeEeeccccc
Q psy12697        370 DWQSNTS--FASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHDLQAHNK  447 (602)
Q Consensus       370 ~~~~~~~--~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~  447 (602)
                      .+++++.  ++....++.+.+++.                 ...+.+....++++..++.+.+||+.++........   
T Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---  248 (346)
T d1jmxb_         189 YSAPDVLYFWPHQSPRHEFSMLYT-----------------IARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFA---  248 (346)
T ss_dssp             BCCCBCCCCCCCCCTTCEEEEEEE-----------------EEEC-------CCCEEEEEEEEEETTTCCEEEEEEE---
T ss_pred             EEeccccEEEEEecCCCceEeeee-----------------eeeeccCceeEeeccCCceEEEEECCCCceEEEEee---
Confidence            5666543  233333444444432                 122334455566677778899999988765443221   


Q ss_pred             cEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeeecccCCCeeE
Q psy12697        448 EIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALD  527 (602)
Q Consensus       448 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~  527 (602)
                                                    .+...+..+.+++++.+++.... +.|.+||..+++.+..+. +...+.+
T Consensus       249 ------------------------------~~~~~~~~~~~~~~~~~~~~~~~-~~v~v~d~~~~~~~~~~~-~~~~~~~  296 (346)
T d1jmxb_         249 ------------------------------DLTELYFTGLRSPKDPNQIYGVL-NRLAKYDLKQRKLIKAAN-LDHTYYC  296 (346)
T ss_dssp             ------------------------------ECSSCEEEEEECSSCTTEEEEEE-SEEEEEETTTTEEEEEEE-CSSCCCE
T ss_pred             ------------------------------cccceeEEEEEeCCCCEEEEecC-CeEEEEECCCCcEEEEEc-CCCCEEE
Confidence                                          13445556666777777777654 579999999999988876 4567999


Q ss_pred             eeecCCc-eEEEeeCCCcEEEeecCCCCceeeeecc
Q psy12697        528 VDWQSNT-SFASCSTDQHIHVCKLHSDKPVKSFEGH  562 (602)
Q Consensus       528 ~~~s~~~-~l~~~~~d~~i~iw~~~~~~~~~~~~~~  562 (602)
                      ++|+||| ++++++.|+.|++||+++++.+.+++..
T Consensus       297 va~s~DG~~l~v~~~d~~v~v~D~~t~~~i~~i~~p  332 (346)
T d1jmxb_         297 VAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKLP  332 (346)
T ss_dssp             EEECSSSSCEEEESBSSEEEEEETTTTEEEEEEECS
T ss_pred             EEEcCCCCEEEEEeCCCcEEEEECccCCEEEEEECC
Confidence            9999999 9999999999999999999888877643

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.90  E-value=1e-22  Score=193.16  Aligned_cols=271  Identities=11%  Similarity=0.067  Sum_probs=194.1

Q ss_pred             eccceeeeecccceeeeeeecc--CCceEEEEECCCCCeE-EEeeCCceEEEEecCCceeEEEeeccCceEEEEeCCCCC
Q psy12697        118 HRLTLPLWDVERGECLNTLTRH--TEPVYSVAFSPDGKFL-ASGSFDKCVHIWSARTGQLVHSYKGTGGIFEVCWNSRGT  194 (602)
Q Consensus       118 ~~~~i~vwd~~~~~~~~~l~~h--~~~V~~~~~s~d~~~l-~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (602)
                      .+++|.|||+++++.++++..+  ...+.+++|+|||++| ++++.++.|.+||+.+++.+..+......          
T Consensus         9 ~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~----------   78 (337)
T d1pbyb_           9 RPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPE----------   78 (337)
T ss_dssp             TTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTT----------
T ss_pred             CCCEEEEEECCCCeEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCc----------
Confidence            3579999999999999999754  4568899999999987 56678999999999999998776543211          


Q ss_pred             CCCCCCCccccccccccCCcceEeeCCCcceEEEEEcCCCCEEEEeeC------------CCcEEEEeCCCCCCCCCccc
Q psy12697        195 PPNPPESMEVDASIEIPQSKATKLIGHESEVFICAWNPVKDFLASGSG------------DSTARIWDMTDSTKKDPKEL  262 (602)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~------------dg~i~iw~~~~~~~~~~~~~  262 (602)
                                               .+...+..++|+|++++++++..            +..+.+||..++.....   
T Consensus        79 -------------------------~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~---  130 (337)
T d1pbyb_          79 -------------------------ERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKA---  130 (337)
T ss_dssp             -------------------------EEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEE---
T ss_pred             -------------------------ccccceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeEEEe---
Confidence                                     12233456899999998887764            56677888776542110   


Q ss_pred             eEEEEEEecCCCcccCCCCceeEEeeCCCCCeEEEEeCCCeEEEEcCCC-cceeecccccCCeEEEEEccC---------
Q psy12697        263 QIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFLATGSYDGYARIWTSDG-SLKSTLGQHKGPIFALKWNKR---------  332 (602)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~-~~~~~~~~~~~~i~~~~~~~~---------  332 (602)
                                    .+....+..++|+|+|+++++++.+  +.+||... .....+..+.. .....++++         
T Consensus       131 --------------~~~~~~~~~~~~s~dg~~l~~~~~~--~~~~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~  193 (337)
T d1pbyb_         131 --------------FEAPRQITMLAWARDGSKLYGLGRD--LHVMDPEAGTLVEDKPIQSW-EAETYAQPDVLAVWNQHE  193 (337)
T ss_dssp             --------------EECCSSCCCEEECTTSSCEEEESSS--EEEEETTTTEEEEEECSTTT-TTTTBCCCBCCCCCCCCT
T ss_pred             --------------ccccCCceEEEEcCCCCEEEEEcCC--cceeeeecCcEEEEeecCCc-cccceecCCcceeecccc
Confidence                          1124567889999999999998654  67788653 33332221111 001111111         


Q ss_pred             ---------------CCEEEEEecCCcEEEEeCCCCceeEE-eeeccCCeeeeeccCCCeEEEeeCCCeEEEEEcCCCce
Q psy12697        333 ---------------GNYILSAGVDKTTIIWDAASGQCEQQ-FSFHSAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKP  396 (602)
Q Consensus       333 ---------------~~~l~~~~~dg~i~~wd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~  396 (602)
                                     .........++.+.+|+..++..... +..+......+.+.+++.++.+. ++.+.+||+.+++.
T Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~v~d~~~~~~  272 (337)
T d1pbyb_         194 SSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA-YNVLESFDLEKNAS  272 (337)
T ss_dssp             TTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE-ESEEEEEETTTTEE
T ss_pred             ccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEEEEecCCCcceEEEEecccceEEEEc-cccEEEEECCCCcE
Confidence                           11112223345689999998876554 44556667778888887766544 68999999999998


Q ss_pred             eeEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeeeEeeccc
Q psy12697        397 VKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHDLQAH  445 (602)
Q Consensus       397 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~  445 (602)
                      +..+. +...+.+++|+|||++|++++.|+.|++||..+++.+.+++..
T Consensus       273 ~~~~~-~~~~~~~~~~s~dG~~l~v~~~~~~i~v~D~~t~~~v~~i~~~  320 (337)
T d1pbyb_         273 IKRVP-LPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDLP  320 (337)
T ss_dssp             EEEEE-CSSCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEEEEEECG
T ss_pred             EEEEc-CCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEEECC
Confidence            88876 5667899999999999999999999999999999988887653

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.90  E-value=1.3e-22  Score=193.19  Aligned_cols=301  Identities=10%  Similarity=0.033  Sum_probs=210.4

Q ss_pred             ccceeeeecccceeeeeee-ccCCceEEEEECCCCCeE-EEeeCCceEEEEecCCceeEEEeeccCceEEEEeCCCCCCC
Q psy12697        119 RLTLPLWDVERGECLNTLT-RHTEPVYSVAFSPDGKFL-ASGSFDKCVHIWSARTGQLVHSYKGTGGIFEVCWNSRGTPP  196 (602)
Q Consensus       119 ~~~i~vwd~~~~~~~~~l~-~h~~~V~~~~~s~d~~~l-~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (602)
                      +++|.|||+++++.+++++ .|...+.+++|+|||+++ ++++.++.|.+||+.+++.+..+.......           
T Consensus        17 ~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~~~~~~-----------   85 (346)
T d1jmxb_          17 PNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPG-----------   85 (346)
T ss_dssp             TTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTT-----------
T ss_pred             CCEEEEEECCCCCEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeeeccccccc-----------
Confidence            4689999999999999997 467788999999999987 556689999999999999887665321110           


Q ss_pred             CCCCCccccccccccCCcceEeeCCCcceEEEEEcCCCCEEEEee------------CCCcEEEEeCCCCCCCCCccceE
Q psy12697        197 NPPESMEVDASIEIPQSKATKLIGHESEVFICAWNPVKDFLASGS------------GDSTARIWDMTDSTKKDPKELQI  264 (602)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~s~~------------~dg~i~iw~~~~~~~~~~~~~~~  264 (602)
                                             .+...+..++|+|||+++++++            .++.+.+|+..++......... 
T Consensus        86 -----------------------~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-  141 (346)
T d1jmxb_          86 -----------------------EVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTF-  141 (346)
T ss_dssp             -----------------------EEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEE-
T ss_pred             -----------------------ccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEee-
Confidence                                   1122345688999999887765            4677888888765543221110 


Q ss_pred             EEEEEecCCCcccCCCCceeEEeeCCCCCeEEEEeCCCeEEEEcCC-CcceeecccccCCeEEEEEccCCCEEEEEe-cC
Q psy12697        265 VLRHCISKGGTEVPSNKDVTSLDWNNNGSFLATGSYDGYARIWTSD-GSLKSTLGQHKGPIFALKWNKRGNYILSAG-VD  342 (602)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~d  342 (602)
                                   .....+..+.+++++..++.+   +.+.+|+.. +.....+..+ .....+.++|++..++... .+
T Consensus       142 -------------~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  204 (346)
T d1jmxb_         142 -------------PMPRQVYLMRAADDGSLYVAG---PDIYKMDVKTGKYTVALPLR-NWNRKGYSAPDVLYFWPHQSPR  204 (346)
T ss_dssp             -------------ECCSSCCCEEECTTSCEEEES---SSEEEECTTTCCEEEEECST-TCCCTTBCCCBCCCCCCCCCTT
T ss_pred             -------------eccCceEEEEecCCCEEEEeC---CcceEEEccCCCEEEEEecC-CCccceEEeccccEEEEEecCC
Confidence                         112446667777787766543   558889876 4444444433 3455667788877665443 34


Q ss_pred             CcEEEEeCCCCceeEEeeeccCCeeeeeccC-CCeEEEeeCCCeEEEEEcCCCceee-EeccCCCCeEEEEECCCCCEEE
Q psy12697        343 KTTIIWDAASGQCEQQFSFHSAPALDVDWQS-NTSFASCSTDQHIHVCKLHSDKPVK-SFEGHTNEVNAIKWDPQGLLLA  420 (602)
Q Consensus       343 g~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~i~d~~~~~~~~-~~~~~~~~i~~~~~~~~~~~l~  420 (602)
                      +.+.+++...                 ...+ ...+.++..++.+.+|+..++.... ....+...+..+.+++++.+++
T Consensus       205 ~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (346)
T d1jmxb_         205 HEFSMLYTIA-----------------RFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQI  267 (346)
T ss_dssp             CEEEEEEEEE-----------------EC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEE
T ss_pred             CceEeeeeee-----------------eeccCceeEeeccCCceEEEEECCCCceEEEEeecccceeEEEEEeCCCCEEE
Confidence            4555443211                 0111 1223445556778999999887554 4556778899999999998888


Q ss_pred             EEECCCeEEEEeCCCCeeeEeeccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeC
Q psy12697        421 SCSDDMTLKIWSLDKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGV  500 (602)
Q Consensus       421 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~  500 (602)
                      .... +.|.+||..+++.+..+..                                   ...+.+++|||||++|++++.
T Consensus       268 ~~~~-~~v~v~d~~~~~~~~~~~~-----------------------------------~~~~~~va~s~DG~~l~v~~~  311 (346)
T d1jmxb_         268 YGVL-NRLAKYDLKQRKLIKAANL-----------------------------------DHTYYCVAFDKKGDKLYLGGT  311 (346)
T ss_dssp             EEEE-SEEEEEETTTTEEEEEEEC-----------------------------------SSCCCEEEECSSSSCEEEESB
T ss_pred             EecC-CeEEEEECCCCcEEEEEcC-----------------------------------CCCEEEEEEcCCCCEEEEEeC
Confidence            7765 5799999999887766542                                   234667888889999999999


Q ss_pred             CCeEEEEeCCCCceeeeecccCCC
Q psy12697        501 DKTTIIWDAASGQCEQQFSFHSAP  524 (602)
Q Consensus       501 dg~i~iwd~~~~~~~~~~~~~~~~  524 (602)
                      |+.|++||+++++.+.++..+.+.
T Consensus       312 d~~v~v~D~~t~~~i~~i~~p~g~  335 (346)
T d1jmxb_         312 FNDLAVFNPDTLEKVKNIKLPGGD  335 (346)
T ss_dssp             SSEEEEEETTTTEEEEEEECSSSC
T ss_pred             CCcEEEEECccCCEEEEEECCCCC
Confidence            999999999999999988865543

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.90  E-value=3.2e-20  Score=178.53  Aligned_cols=315  Identities=11%  Similarity=-0.027  Sum_probs=221.7

Q ss_pred             ccCCceEEEEECCCCCeEEEee-----CCceEEEEecCCceeEEEeeccCceEEEEeCCCCCCCCCCCCccccccccccC
Q psy12697        138 RHTEPVYSVAFSPDGKFLASGS-----FDKCVHIWSARTGQLVHSYKGTGGIFEVCWNSRGTPPNPPESMEVDASIEIPQ  212 (602)
Q Consensus       138 ~h~~~V~~~~~s~d~~~l~s~~-----~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  212 (602)
                      .+..++.+++++|||+.++...     .++.|.+||..+++.+..+..                                
T Consensus        18 ~~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~~--------------------------------   65 (373)
T d2madh_          18 AADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNG--------------------------------   65 (373)
T ss_pred             cCCCCccccccCCCCCEEEEEcccccCCCceEEEEECCCCCEEEEEeC--------------------------------
Confidence            4788899999999999887652     356799999999998865432                                


Q ss_pred             CcceEeeCCCcceEEEEEcCCCCEEEEee----------CCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCc
Q psy12697        213 SKATKLIGHESEVFICAWNPVKDFLASGS----------GDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKD  282 (602)
Q Consensus       213 ~~~~~l~~h~~~v~~~~~~~~~~~l~s~~----------~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  282 (602)
                              +..  ..++|+|||++|++++          .++.|.+||..+++.............         .....
T Consensus        66 --------~~~--~~~a~SpDG~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~---------~~~~~  126 (373)
T d2madh_          66 --------GFL--PNPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRF---------DVGPY  126 (373)
T ss_pred             --------CCC--ccEEEcCCCCEEEEEeecCCcccccccceEEEEEECCCCcEEEEEecCCccee---------EeccC
Confidence                    222  2588999999988875          457899999998765322211110000         00122


Q ss_pred             eeEEeeCCCCCeEEEEeC--CCeEEEEcCCCcceeecccccCCeEEEEEccCCCEE-EEEecCCcEEEEeCCCCceeEEe
Q psy12697        283 VTSLDWNNNGSFLATGSY--DGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYI-LSAGVDKTTIIWDAASGQCEQQF  359 (602)
Q Consensus       283 i~~~~~~~~~~~l~~~~~--dg~i~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l-~~~~~dg~i~~wd~~~~~~~~~~  359 (602)
                      ...+.|+++++.+++...  ++.+.+|+.......   .+.....++.++|+++.+ ++.+.|+.+.+|+...++.....
T Consensus       127 ~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~  203 (373)
T d2madh_         127 SWMNANTPNNADLLFFQFAAGPAVGLVVQGGSSDD---QLLSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGL  203 (373)
T ss_pred             CCcEEEEeCCCcEEEEEEcCCCceEEeeccCCeEE---EEeccceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEE
Confidence            356789999987766543  467888887643322   333456788999998765 57888999999999988777655


Q ss_pred             eecc------CCeeeeeccCCCeEEEeeCCCeEEEEEcCCCcee--eEeccCCCCeEEEEECCCCCEEEEEECCCeEEEE
Q psy12697        360 SFHS------APALDVDWQSNTSFASCSTDQHIHVCKLHSDKPV--KSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIW  431 (602)
Q Consensus       360 ~~~~------~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~--~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw  431 (602)
                      ....      .......+.+++.++..+.++.+.+|+.......  .....+........+.|.+...+..+.|+....+
T Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~  283 (373)
T d2madh_         204 VGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYL  283 (373)
T ss_pred             eeeccccCccceeeeEEECCCceEEEecCCceEEEEEcCCCeEEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEE
Confidence            4322      1233455667778888888999999998876543  3334444555566666666555566555543322


Q ss_pred             eCCCCeeeEeeccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCCCeEEEEeCCC
Q psy12697        432 SLDKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAAS  511 (602)
Q Consensus       432 d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~~~  511 (602)
                      -                                                        .+++..+++...++.+.+||..+
T Consensus       284 ~--------------------------------------------------------~~~~~~~~~~~~~~~v~~~d~~t  307 (373)
T d2madh_         284 L--------------------------------------------------------TSEQSAWKLHAAAKEVTSVTGLV  307 (373)
T ss_pred             e--------------------------------------------------------cCCCceEEeecCCCeEEEEECCC
Confidence            1                                                        12345577888889999999999


Q ss_pred             CceeeeecccCCCeeEeeecCCc-e--EEEeeCCCcEEEeecCCCCceeeeeccc
Q psy12697        512 GQCEQQFSFHSAPALDVDWQSNT-S--FASCSTDQHIHVCKLHSDKPVKSFEGHT  563 (602)
Q Consensus       512 ~~~~~~~~~~~~~v~~~~~s~~~-~--l~~~~~d~~i~iw~~~~~~~~~~~~~~~  563 (602)
                      ++.+..+. +...+..++|+||| .  +++++.|+.|++||+.+++.+.++..+.
T Consensus       308 ~~~~~~~~-~~~~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~tg~~~~~~~~~g  361 (373)
T d2madh_         308 GQTSSQIS-LGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQSTVELG  361 (373)
T ss_pred             CcEEEEec-CCCCeeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEECCCC
Confidence            99998876 66778999999998 3  4678899999999999999888887653

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.85  E-value=7.1e-20  Score=174.77  Aligned_cols=303  Identities=12%  Similarity=0.041  Sum_probs=194.0

Q ss_pred             eccceeeeecccceeeeeeeccCCceEEEEECCCCCeEEEee----------CCceEEEEecCCceeEEEeeccCceEEE
Q psy12697        118 HRLTLPLWDVERGECLNTLTRHTEPVYSVAFSPDGKFLASGS----------FDKCVHIWSARTGQLVHSYKGTGGIFEV  187 (602)
Q Consensus       118 ~~~~i~vwd~~~~~~~~~l~~h~~~V~~~~~s~d~~~l~s~~----------~d~~v~iwd~~~~~~~~~~~~~~~~~~~  187 (602)
                      ...+|.+||..+++.+.++..+..+  .++|||||++|++++          .|+.|++||..+++.+..+..+....  
T Consensus        26 ~~~~v~v~D~~tg~~~~~~~~g~~~--~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~~~--  101 (355)
T d2bbkh_          26 AVTQQFVIDGEAGRVIGMIDGGFLP--NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPR--  101 (355)
T ss_dssp             SSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCC--
T ss_pred             CcCeEEEEECCCCcEEEEEECCCCC--ceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECCCCCEEEEEecCCcce--
Confidence            4568999999999999999876655  799999999888653          47899999999999887654321100  


Q ss_pred             EeCCCCCCCCCCCCccccccccccCCcceEeeCCCcceEEEEEcCCCCEEEEee--CCCcEEEEeCCCCCCCCCccceEE
Q psy12697        188 CWNSRGTPPNPPESMEVDASIEIPQSKATKLIGHESEVFICAWNPVKDFLASGS--GDSTARIWDMTDSTKKDPKELQIV  265 (602)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~s~~--~dg~i~iw~~~~~~~~~~~~~~~~  265 (602)
                                                     .........++|+|++++++.++  .+..+.+|+..+++..........
T Consensus       102 -------------------------------~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (355)
T d2bbkh_         102 -------------------------------FLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDC  150 (355)
T ss_dssp             -------------------------------CCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE
T ss_pred             -------------------------------eecCCCCceEEEecCCCeeEEecCCCCceeeeeecCCCcEeeEEecCCc
Confidence                                           01122234578999999887764  467899999987654221111000


Q ss_pred             EEEEecCCCcccCCCCceeEEeeCCCCCeEEEEeC-CCeEEEEcCCCcceeecccccCCeEEEEEccCCCEEEEEecCCc
Q psy12697        266 LRHCISKGGTEVPSNKDVTSLDWNNNGSFLATGSY-DGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKT  344 (602)
Q Consensus       266 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~i~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~  344 (602)
                      .         ..........+.++++++.++.... ++.+.+++.....    ..+...+....+.+++..++.++.++.
T Consensus       151 ~---------~~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~  217 (355)
T d2bbkh_         151 Y---------HIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFH----PEDEFLINHPAYSQKAGRLVWPTYTGK  217 (355)
T ss_dssp             E---------EEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCS----CTTSCBCSCCEEETTTTEEEEEBTTSE
T ss_pred             c---------eEeecCCcceEEEcCCCCEEEEEecCCCeEEEEeccccc----ceecceeeeccccCCCCeEEEecCCCe
Confidence            0         0000123445667777776655433 3444444433211    123334555677888889999999999


Q ss_pred             EEEEeCCCCceeEEe--eeccCCeeeeeccCCCeEEEeeCCCeEEEEEcCCCceeeEeccCCCCeEEEEECCCCCEEEEE
Q psy12697        345 TIIWDAASGQCEQQF--SFHSAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASC  422 (602)
Q Consensus       345 i~~wd~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~  422 (602)
                      +.+|++..++.....  ..+........+.+                               .....++++|++..++..
T Consensus       218 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p-------------------------------~~~~~~~~~~d~~~~~~~  266 (355)
T d2bbkh_         218 IHQIDLSSGDAKFLPAVEALTEAERADGWRP-------------------------------GGWQQVAYHRALDRIYLL  266 (355)
T ss_dssp             EEEEECTTSSCEECCCEESSCHHHHHTTEEE-------------------------------CSSSCEEEETTTTEEEEE
T ss_pred             EEEEecCCCcEEEEeccCCcccceEeeeeec-------------------------------cceEEEEEeCCCCeEEEE
Confidence            999999876542211  11111111111111                               112346777887777665


Q ss_pred             ECC----------CeEEEEeCCCCeeeEeeccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCC
Q psy12697        423 SDD----------MTLKIWSLDKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRG  492 (602)
Q Consensus       423 ~~d----------g~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~  492 (602)
                      ..+          ..|.+||..+++.+..+..                                   ...+.+++|+|||
T Consensus       267 ~~~~~~~~~~~~~~~v~v~d~~t~~~~~~~~~-----------------------------------~~~~~~~a~spDG  311 (355)
T d2bbkh_         267 VDQRDEWRHKTASRFVVVLDAKTGERLAKFEM-----------------------------------GHEIDSINVSQDE  311 (355)
T ss_dssp             EEECCTTCTTSCEEEEEEEETTTCCEEEEEEE-----------------------------------EEEECEEEECCSS
T ss_pred             eccCCceeecCCCCeEEEEeCCCCcEEEEecC-----------------------------------CCCEEEEEEcCCC
Confidence            443          4699999999887766542                                   2235567778888


Q ss_pred             C--EEEEEeCCCeEEEEeCCCCceeeeecccCCCeeEeeecCCc
Q psy12697        493 N--YILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNT  534 (602)
Q Consensus       493 ~--~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~  534 (602)
                      +  ++++++.|+.|++||+++++.+.++..+......+.+.++|
T Consensus       312 ~~~l~v~~~~d~~i~v~D~~tg~~~~~i~~~G~~p~~i~~~d~~  355 (355)
T d2bbkh_         312 KPLLYALSTGDKTLYIHDAESGEELRSVNQLGHGPQVITTADMG  355 (355)
T ss_dssp             SCEEEEEETTTTEEEEEETTTCCEEEEECCCCSSCCEEECCCCC
T ss_pred             CeEEEEEECCCCEEEEEECCCCCEEEEEeCcCCCccEEEeCCCC
Confidence            7  45677789999999999999999998776666666665543

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.84  E-value=3.7e-18  Score=163.91  Aligned_cols=303  Identities=10%  Similarity=-0.027  Sum_probs=207.9

Q ss_pred             eccceeeeecccceeeeeeeccCCceEEEEECCCCCeEEEee----------CCceEEEEecCCceeEEEeeccCce---
Q psy12697        118 HRLTLPLWDVERGECLNTLTRHTEPVYSVAFSPDGKFLASGS----------FDKCVHIWSARTGQLVHSYKGTGGI---  184 (602)
Q Consensus       118 ~~~~i~vwd~~~~~~~~~l~~h~~~V~~~~~s~d~~~l~s~~----------~d~~v~iwd~~~~~~~~~~~~~~~~---  184 (602)
                      ....|.+||.++++.+.++..+..+  .++|||||++|++++          .++.|.+||..+++.+..+..+...   
T Consensus        45 ~~~~v~v~D~~tg~~~~~~~~~~~~--~~a~SpDG~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~  122 (373)
T d2madh_          45 AIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFD  122 (373)
T ss_pred             CCceEEEEECCCCCEEEEEeCCCCc--cEEEcCCCCEEEEEeecCCcccccccceEEEEEECCCCcEEEEEecCCcceeE
Confidence            3467999999999999999877655  799999999999875          4688999999999998887655432   


Q ss_pred             -----EEEEeCCCCCCCCCCCCccccccccccCCcceEeeCCCcceEEEEEcCCCCE-EEEeeCCCcEEEEeCCCCCCCC
Q psy12697        185 -----FEVCWNSRGTPPNPPESMEVDASIEIPQSKATKLIGHESEVFICAWNPVKDF-LASGSGDSTARIWDMTDSTKKD  258 (602)
Q Consensus       185 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~-l~s~~~dg~i~iw~~~~~~~~~  258 (602)
                           ..+.|+++++.......... ....+..........+.....++.++|+++. +++.+.|+.+.+|+........
T Consensus       123 ~~~~~~~~~~s~dg~~~~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~  201 (373)
T d2madh_         123 VGPYSWMNANTPNNADLLFFQFAAG-PAVGLVVQGGSSDDQLLSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGA  201 (373)
T ss_pred             eccCCCcEEEEeCCCcEEEEEEcCC-CceEEeeccCCeEEEEeccceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeE
Confidence                 34667777765433221111 1111111122233455566778999999865 4678899999999988765432


Q ss_pred             CccceEEEEEEecCCCcccCCCCceeEEeeCCCCCeEEEEeCCCeEEEEcCCCcce---eecccccCCeEEEEEccCCCE
Q psy12697        259 PKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFLATGSYDGYARIWTSDGSLK---STLGQHKGPIFALKWNKRGNY  335 (602)
Q Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~---~~~~~~~~~i~~~~~~~~~~~  335 (602)
                      ....     ..     ...........+.+.+++. ++..+.++.+.+|+......   .....+........+.|....
T Consensus       202 ~~~~-----~~-----~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (373)
T d2madh_         202 GLVG-----AM-----LTAAQNLLTQPAQANKSGR-IVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQ  270 (373)
T ss_pred             EEee-----ec-----cccCccceeeeEEECCCce-EEEecCCceEEEEEcCCCeEEEEEeeccccCcEEeeeeccCcce
Confidence            1110     00     0011122234556666664 44556788899998775432   233344555666677777666


Q ss_pred             EEEEecCCcEEEEeCCCCceeEEeeeccCCeeeeeccCCCeEEEeeCCCeEEEEEcCCCceeeEeccCCCCeEEEEECCC
Q psy12697        336 ILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQ  415 (602)
Q Consensus       336 l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~  415 (602)
                      .++.+.|+....+-                     ..++..++....++.+.+||..+++.+..+. +...+..++|+||
T Consensus       271 ~~~~~~d~~~~~~~---------------------~~~~~~~~~~~~~~~v~~~d~~t~~~~~~~~-~~~~~~~~a~spD  328 (373)
T d2madh_         271 QVAYLKSSDGIYLL---------------------TSEQSAWKLHAAAKEVTSVTGLVGQTSSQIS-LGHDVDAISVAQD  328 (373)
T ss_pred             eeEEecCCCeEEEe---------------------cCCCceEEeecCCCeEEEEECCCCcEEEEec-CCCCeeEEEECCC
Confidence            66776666544332                     2234556777888999999999999888776 5667899999999


Q ss_pred             CCE--EEEEECCCeEEEEeCCCCeeeEeeccccccEEEEEECC
Q psy12697        416 GLL--LASCSDDMTLKIWSLDKDNCVHDLQAHNKEIYTIKWSP  456 (602)
Q Consensus       416 ~~~--l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~  456 (602)
                      |+.  +++++.|+.|++||+.+++.+.++..+......+++.+
T Consensus       329 G~~~l~vt~~~d~~v~v~D~~tg~~~~~~~~~g~~P~~l~~~~  371 (373)
T d2madh_         329 GGPDLYALSAGTEVLHIYDAGAGDQDQSTVELGSGPQVLSVMN  371 (373)
T ss_pred             CCEEEEEEeCCCCeEEEEECCCCCEEEEECCCCCCCcEEEEec
Confidence            984  46788999999999999999999988777666666543

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.83  E-value=2.9e-18  Score=161.78  Aligned_cols=280  Identities=12%  Similarity=0.219  Sum_probs=185.4

Q ss_pred             eEEEeeCCceEEEEecCCceeEEEeeccCceEEEEeCCCCCCCCCCCCccccccccccCCcceEeeCCCcceEEEEEcCC
Q psy12697        154 FLASGSFDKCVHIWSARTGQLVHSYKGTGGIFEVCWNSRGTPPNPPESMEVDASIEIPQSKATKLIGHESEVFICAWNPV  233 (602)
Q Consensus       154 ~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~  233 (602)
                      .+++++.|++|+||++.+...+..+                                      ....|...+..++|+||
T Consensus         6 v~v~~~~~~~I~v~~~~~~~~l~~~--------------------------------------~~~~~~~~v~~la~spD   47 (333)
T d1ri6a_           6 VYIASPESQQIHVWNLNHEGALTLT--------------------------------------QVVDVPGQVQPMVVSPD   47 (333)
T ss_dssp             EEEEEGGGTEEEEEEECTTSCEEEE--------------------------------------EEEECSSCCCCEEECTT
T ss_pred             EEEECCCCCcEEEEEEcCCCCeEEE--------------------------------------EEEcCCCCEeEEEEeCC
Confidence            4577789999999999765433221                                      22347788999999999


Q ss_pred             CCEEEEee-CCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEeeCCCCCeEEEEeC-CCeEEEEcCCC
Q psy12697        234 KDFLASGS-GDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFLATGSY-DGYARIWTSDG  311 (602)
Q Consensus       234 ~~~l~s~~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~i~i~~~~~  311 (602)
                      |++|++++ .|+.|++|++........     ...+        ......+..++|+|||++|++++. ++.+.+|+...
T Consensus        48 G~~L~v~~~~d~~i~~~~i~~~~~~~~-----~~~~--------~~~~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~  114 (333)
T d1ri6a_          48 KRYLYVGVRPEFRVLAYRIAPDDGALT-----FAAE--------SALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLED  114 (333)
T ss_dssp             SSEEEEEETTTTEEEEEEECTTTCCEE-----EEEE--------EECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEET
T ss_pred             CCEEEEEECCCCeEEEEEEeCCCCcEE-----Eeee--------cccCCCceEEEEcCCCCEEeecccCCCceeeecccc
Confidence            99986555 589999999986654311     1111        112355778999999999998875 66888888653


Q ss_pred             cc---eeecccccCCeEEEEEccCCCEEEEEec-CCcEEEEeCCCCceeEEee------eccCCeeeeeccCCCeE--EE
Q psy12697        312 SL---KSTLGQHKGPIFALKWNKRGNYILSAGV-DKTTIIWDAASGQCEQQFS------FHSAPALDVDWQSNTSF--AS  379 (602)
Q Consensus       312 ~~---~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~i~~wd~~~~~~~~~~~------~~~~~~~~~~~~~~~~~--~~  379 (602)
                      ..   ......+...+.++.++|+++++++++. +..+.+|+...........      ........+.|++++..  .+
T Consensus       115 ~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~  194 (333)
T d1ri6a_         115 GLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCV  194 (333)
T ss_dssp             TEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEE
T ss_pred             ccceecccccCCCccceEEEeeecceeeeccccccceeeEEEeccCCcceeeeceeeeeecCCCccEEEEeccceeEEee
Confidence            32   2233456667889999999999887775 4578899887654332211      12334567788887653  34


Q ss_pred             eeCCCeEEEEEcCCCce----eeEec------cCCCCeEEEEECCCCCEEEEEE-CCCeEEEEeCCCCeeeEeecccccc
Q psy12697        380 CSTDQHIHVCKLHSDKP----VKSFE------GHTNEVNAIKWDPQGLLLASCS-DDMTLKIWSLDKDNCVHDLQAHNKE  448 (602)
Q Consensus       380 ~~~~~~i~i~d~~~~~~----~~~~~------~~~~~i~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~  448 (602)
                      ....+...+++......    .....      ........+++++++++++... .++.+.+|++...........+.  
T Consensus       195 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  272 (333)
T d1ri6a_         195 NELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQ--  272 (333)
T ss_dssp             ETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEE--
T ss_pred             ccccCceEEEeecccccceeeeeeeeeeecCCCccccceeEEEecccCceeeecccCCeEEEEEEcCCCCEEEEEEEe--
Confidence            44667788888654321    11111      1234567889999998776654 56789999887654333222110  


Q ss_pred             EEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEe-CCCeEEEE--eCCCCcee
Q psy12697        449 IYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAG-VDKTTIIW--DAASGQCE  515 (602)
Q Consensus       449 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~-~dg~i~iw--d~~~~~~~  515 (602)
                                                   .....+..++|+|||++|++++ .++.|.+|  |.++|++.
T Consensus       273 -----------------------------~~~~~p~~~a~spDGk~l~va~~~~~~v~v~~id~~tG~l~  313 (333)
T d1ri6a_         273 -----------------------------PTETQPRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLLH  313 (333)
T ss_dssp             -----------------------------ECSSSCCCEEECTTSSEEEEECTTTCEEEEEEEETTTTEEE
T ss_pred             -----------------------------CCCCCeeEEEEeCCCCEEEEEECCCCeEEEEEEECCCCcEE
Confidence                                         1223456788999999887765 46889998  55667553

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.82  E-value=2.1e-18  Score=164.39  Aligned_cols=304  Identities=10%  Similarity=0.059  Sum_probs=187.1

Q ss_pred             EEEECCCCCeEEEee-----CCceEEEEecCCceeEEEeeccCceEEEEeCCCCCCCCCCCCccccccccccCCcceEee
Q psy12697        145 SVAFSPDGKFLASGS-----FDKCVHIWSARTGQLVHSYKGTGGIFEVCWNSRGTPPNPPESMEVDASIEIPQSKATKLI  219 (602)
Q Consensus       145 ~~~~s~d~~~l~s~~-----~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  219 (602)
                      -.+.+|||+.++...     .+..|.+||..+++.+.++..                                       
T Consensus         6 ~~a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~~~---------------------------------------   46 (355)
T d2bbkh_           6 LEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDG---------------------------------------   46 (355)
T ss_dssp             CCCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEE---------------------------------------
T ss_pred             eEeeCCCCCEEEEEecccCCCcCeEEEEECCCCcEEEEEEC---------------------------------------
Confidence            346689999887653     467899999999998865432                                       


Q ss_pred             CCCcceEEEEEcCCCCEEEEe----------eCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEeeC
Q psy12697        220 GHESEVFICAWNPVKDFLASG----------SGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWN  289 (602)
Q Consensus       220 ~h~~~v~~~~~~~~~~~l~s~----------~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  289 (602)
                       +.  ...++|+|||++|+++          +.|+.|++||..+++......        . ..............++|+
T Consensus        47 -g~--~~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~--------~-~~~~~~~~~~~~~~~~~s  114 (355)
T d2bbkh_          47 -GF--LPNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIE--------L-PDAPRFLVGTYPWMTSLT  114 (355)
T ss_dssp             -CS--SCEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEE--------E-TTCCCCCBSCCGGGEEEC
T ss_pred             -CC--CCceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECCCCCEEEEEe--------c-CCcceeecCCCCceEEEe
Confidence             22  2268999999988764          347899999998875421110        0 011111112345678999


Q ss_pred             CCCCeEEEEe--CCCeEEEEcCCCc-ceeecccccCCeEEEEEccCCCEEEEEecCCcEEEEeCCCCceeEEeeeccCCe
Q psy12697        290 NNGSFLATGS--YDGYARIWTSDGS-LKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPA  366 (602)
Q Consensus       290 ~~~~~l~~~~--~dg~i~i~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~  366 (602)
                      |++++++++.  .+..+.+|+.... ....+..+.. .  ..+.......++.+.|+...++.....             
T Consensus       115 ~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~dg~~~~v~~~~~-------------  178 (355)
T d2bbkh_         115 PDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDC-Y--HIFPTAPDTFFMHCRDGSLAKVAFGTE-------------  178 (355)
T ss_dssp             TTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE-E--EEEEEETTEEEEEETTSCEEEEECCSS-------------
T ss_pred             cCCCeeEEecCCCCceeeeeecCCCcEeeEEecCCc-c--eEeecCCcceEEEcCCCCEEEEEecCC-------------
Confidence            9999888765  4567888987643 3333332211 1  111112223344444544444433222             


Q ss_pred             eeeeccCCCeEEEeeCCCeEEEEEcCCCceeeEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeeeEe--ecc
Q psy12697        367 LDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHD--LQA  444 (602)
Q Consensus       367 ~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~--~~~  444 (602)
                                       +.+.+++......     .+...+....+.+++..++.++.++.+++|++..++....  ...
T Consensus       179 -----------------~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  236 (355)
T d2bbkh_         179 -----------------GTPEITHTEVFHP-----EDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEA  236 (355)
T ss_dssp             -----------------SCCEEEECCCCSC-----TTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEES
T ss_pred             -----------------CeEEEEecccccc-----eecceeeeccccCCCCeEEEecCCCeEEEEecCCCcEEEEeccCC
Confidence                             1222222222111     1223344556778888899999999999999987643221  111


Q ss_pred             ccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCC----------CeEEEEeCCCCce
Q psy12697        445 HNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVD----------KTTIIWDAASGQC  514 (602)
Q Consensus       445 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d----------g~i~iwd~~~~~~  514 (602)
                      +........+.                        ......+++++++..++....+          ..|.+||..+++.
T Consensus       237 ~~~~~~~~~~~------------------------p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~  292 (355)
T d2bbkh_         237 LTEAERADGWR------------------------PGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGER  292 (355)
T ss_dssp             SCHHHHHTTEE------------------------ECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCE
T ss_pred             cccceEeeeee------------------------ccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCCCcE
Confidence            11111111111                        1223457888999888766543          4699999999999


Q ss_pred             eeeecccCCCeeEeeecCCc-e--EEEeeCCCcEEEeecCCCCceeeeecc
Q psy12697        515 EQQFSFHSAPALDVDWQSNT-S--FASCSTDQHIHVCKLHSDKPVKSFEGH  562 (602)
Q Consensus       515 ~~~~~~~~~~v~~~~~s~~~-~--l~~~~~d~~i~iw~~~~~~~~~~~~~~  562 (602)
                      +..+. +...+.+++|+||| .  +++++.|+.|++||+++++.+.++.++
T Consensus       293 ~~~~~-~~~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~tg~~~~~i~~~  342 (355)
T d2bbkh_         293 LAKFE-MGHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQL  342 (355)
T ss_dssp             EEEEE-EEEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEECCC
T ss_pred             EEEec-CCCCEEEEEEcCCCCeEEEEEECCCCEEEEEECCCCCEEEEEeCc
Confidence            88877 34568899999998 3  456677999999999999888887654

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.80  E-value=1e-17  Score=157.89  Aligned_cols=270  Identities=12%  Similarity=0.159  Sum_probs=178.4

Q ss_pred             eccceeeeecccceeeeee--eccCCceEEEEECCCCCeEEEee-CCceEEEEecCCceeEEEeeccCceEEEEeCCCCC
Q psy12697        118 HRLTLPLWDVERGECLNTL--TRHTEPVYSVAFSPDGKFLASGS-FDKCVHIWSARTGQLVHSYKGTGGIFEVCWNSRGT  194 (602)
Q Consensus       118 ~~~~i~vwd~~~~~~~~~l--~~h~~~V~~~~~s~d~~~l~s~~-~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (602)
                      .+.+|+|||+.+...+..+  ..|.+.|..|+|||||++|++++ .|+.|++|++........+.               
T Consensus        12 ~~~~I~v~~~~~~~~l~~~~~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~---------------   76 (333)
T d1ri6a_          12 ESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFA---------------   76 (333)
T ss_dssp             GGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEE---------------
T ss_pred             CCCcEEEEEEcCCCCeEEEEEEcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEe---------------
Confidence            3578999999765444333  36889999999999999996555 58999999997654332211               


Q ss_pred             CCCCCCCccccccccccCCcceEeeCCCcceEEEEEcCCCCEEEEeeC-CCcEEEEeCCCCCCCCCccceEEEEEEecCC
Q psy12697        195 PPNPPESMEVDASIEIPQSKATKLIGHESEVFICAWNPVKDFLASGSG-DSTARIWDMTDSTKKDPKELQIVLRHCISKG  273 (602)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~  273 (602)
                                            ....+...+..++|+|||++|++++. ++.+.+|+........      ..       
T Consensus        77 ----------------------~~~~~~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~------~~-------  121 (333)
T d1ri6a_          77 ----------------------AESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVG------VV-------  121 (333)
T ss_dssp             ----------------------EEEECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEE------EE-------
T ss_pred             ----------------------eecccCCCceEEEEcCCCCEEeecccCCCceeeecccccccee------cc-------
Confidence                                  11224455678999999999998875 6789999876543211      00       


Q ss_pred             CcccCCCCceeEEeeCCCCCeEEEEeCC-CeEEEEcCCCccee-------ecccccCCeEEEEEccCCCEEEEEe-cCCc
Q psy12697        274 GTEVPSNKDVTSLDWNNNGSFLATGSYD-GYARIWTSDGSLKS-------TLGQHKGPIFALKWNKRGNYILSAG-VDKT  344 (602)
Q Consensus       274 ~~~~~~~~~i~~~~~~~~~~~l~~~~~d-g~i~i~~~~~~~~~-------~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~  344 (602)
                       ....+...+.++.++|+++++++++.+ ..+.+|+.......       ...........++|++++..++... ..+.
T Consensus       122 -~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~  200 (333)
T d1ri6a_         122 -DVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSS  200 (333)
T ss_dssp             -EEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTE
T ss_pred             -cccCCCccceEEEeeecceeeeccccccceeeEEEeccCCcceeeeceeeeeecCCCccEEEEeccceeEEeeccccCc
Confidence             011234567889999999988877754 57888886532111       1122345568899999999887655 4566


Q ss_pred             EEEEeCCCCce----eEEeee------ccCCeeeeeccCCCe--EEEeeCCCeEEEEEcCCCceeeEe---ccCCCCeEE
Q psy12697        345 TIIWDAASGQC----EQQFSF------HSAPALDVDWQSNTS--FASCSTDQHIHVCKLHSDKPVKSF---EGHTNEVNA  409 (602)
Q Consensus       345 i~~wd~~~~~~----~~~~~~------~~~~~~~~~~~~~~~--~~~~~~~~~i~i~d~~~~~~~~~~---~~~~~~i~~  409 (602)
                      ..+|+......    ......      .......+.+++++.  ++.+..++.+.+|++.........   ......+..
T Consensus       201 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~  280 (333)
T d1ri6a_         201 VDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRG  280 (333)
T ss_dssp             EEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCC
T ss_pred             eEEEeecccccceeeeeeeeeeecCCCccccceeEEEecccCceeeecccCCeEEEEEEcCCCCEEEEEEEeCCCCCeeE
Confidence            77777543321    111111      122344566777754  455567789999998765443333   234456788


Q ss_pred             EEECCCCCEEEEEEC-CCeEEEEeC--CCCee
Q psy12697        410 IKWDPQGLLLASCSD-DMTLKIWSL--DKDNC  438 (602)
Q Consensus       410 ~~~~~~~~~l~~~~~-dg~i~iwd~--~~~~~  438 (602)
                      ++|+|||++|++++. ++.|++|++  .+++.
T Consensus       281 ~a~spDGk~l~va~~~~~~v~v~~id~~tG~l  312 (333)
T d1ri6a_         281 FNVDHSGKYLIAAGQKSHHISVYEIVGEQGLL  312 (333)
T ss_dssp             EEECTTSSEEEEECTTTCEEEEEEEETTTTEE
T ss_pred             EEEeCCCCEEEEEECCCCeEEEEEEECCCCcE
Confidence            999999999877754 688999954  55543

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.71  E-value=1.6e-15  Score=150.05  Aligned_cols=144  Identities=13%  Similarity=0.175  Sum_probs=105.5

Q ss_pred             EEEECCCCCeEEEeeCCceEEEEecCCceeEEEeeccCceEEEEeCCCCCCCCCCCCccccccccccCCcceEeeCCCcc
Q psy12697        145 SVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKGTGGIFEVCWNSRGTPPNPPESMEVDASIEIPQSKATKLIGHESE  224 (602)
Q Consensus       145 ~~~~s~d~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~  224 (602)
                      .+.|.+|++++..  .|+.+.+||+.+++....+..                                   ..+..|...
T Consensus        21 ~~~W~~d~~~~~~--~~~~~~~~~~~t~~~~~~~~~-----------------------------------~~~~~~~~~   63 (470)
T d2bgra1          21 SLRWISDHEYLYK--QENNILVFNAEYGNSSVFLEN-----------------------------------STFDEFGHS   63 (470)
T ss_dssp             CCEECSSSEEEEE--SSSCEEEEETTTCCEEEEECT-----------------------------------TTTTTSSSC
T ss_pred             CCEeCCCCEEEEE--cCCcEEEEECCCCCEEEEEch-----------------------------------hhhhhccCc
Confidence            4679999998874  478899999999987644332                                   234457788


Q ss_pred             eEEEEEcCCCCEEEEeeC---------CCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEeeCCCCCeE
Q psy12697        225 VFICAWNPVKDFLASGSG---------DSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFL  295 (602)
Q Consensus       225 v~~~~~~~~~~~l~s~~~---------dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l  295 (602)
                      |.++.|+||+++|+.++.         ++.+.+||+.+++....                 ..+...+..+.|||||+.+
T Consensus        64 i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~~~~~~l-----------------~~~~~~~~~~~~SPDG~~i  126 (470)
T d2bgra1          64 INDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLITE-----------------ERIPNNTQWVTWSPVGHKL  126 (470)
T ss_dssp             CCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCS-----------------SCCCTTEEEEEECSSTTCE
T ss_pred             cceeEECCCCCEEEEEECCcceeeeccCceEEEEECCCCccccc-----------------ccCCccccccccccCccee
Confidence            999999999999998753         56788999988754321                 1235678999999999999


Q ss_pred             EEEeCCCeEEEEcCCCcceeecc-c------------------ccCCeEEEEEccCCCEEEEEecCC
Q psy12697        296 ATGSYDGYARIWTSDGSLKSTLG-Q------------------HKGPIFALKWNKRGNYILSAGVDK  343 (602)
Q Consensus       296 ~~~~~dg~i~i~~~~~~~~~~~~-~------------------~~~~i~~~~~~~~~~~l~~~~~dg  343 (602)
                      |.. .++.+.+|+..+.....+. .                  ..+....+.|||||++|+....|.
T Consensus       127 a~~-~~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~wSPDGk~ia~~~~d~  192 (470)
T d2bgra1         127 AYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFND  192 (470)
T ss_dssp             EEE-ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEEC
T ss_pred             eEe-ecccceEEECCCCceeeeeeccCCCcccccccceeeeeeecCCccccEECCCCCccceeEecC
Confidence            985 5678999997744332221 1                  123345688999999999887653

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.71  E-value=2.8e-15  Score=148.25  Aligned_cols=328  Identities=14%  Similarity=0.094  Sum_probs=186.2

Q ss_pred             ccceeeeecccceeeeeee-----ccCCceEEEEECCCCCeEEEeeC---------CceEEEEecCCceeEEEeeccCce
Q psy12697        119 RLTLPLWDVERGECLNTLT-----RHTEPVYSVAFSPDGKFLASGSF---------DKCVHIWSARTGQLVHSYKGTGGI  184 (602)
Q Consensus       119 ~~~i~vwd~~~~~~~~~l~-----~h~~~V~~~~~s~d~~~l~s~~~---------d~~v~iwd~~~~~~~~~~~~~~~~  184 (602)
                      ++.+.+||+.+++....+.     .|...|.++.|||||++|+.++.         ++.+.|||+.+++.          
T Consensus        35 ~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~~~~----------  104 (470)
T d2bgra1          35 ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQL----------  104 (470)
T ss_dssp             SSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEE----------
T ss_pred             CCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEECCCCcc----------
Confidence            4679999999998876554     45678999999999999998753         56788999988764          


Q ss_pred             EEEEeCCCCCCCCCCCCccccccccccCCcceEeeCCCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCccceE
Q psy12697        185 FEVCWNSRGTPPNPPESMEVDASIEIPQSKATKLIGHESEVFICAWNPVKDFLASGSGDSTARIWDMTDSTKKDPKELQI  264 (602)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~  264 (602)
                                                     ..+..|...+....|+|||+.+|.. .++.+.+|+..++..........
T Consensus       105 -------------------------------~~l~~~~~~~~~~~~SPDG~~ia~~-~~~~l~~~~~~~g~~~~~t~~~~  152 (470)
T d2bgra1         105 -------------------------------ITEERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYRITWTGK  152 (470)
T ss_dssp             -------------------------------CCSSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCEECCSCCB
T ss_pred             -------------------------------cccccCCccccccccccCcceeeEe-ecccceEEECCCCceeeeeeccC
Confidence                                           2345678889999999999999986 46789999988776432111000


Q ss_pred             EEEEEe-cCC-CcccCCCCceeEEeeCCCCCeEEEEeCCCe-EEEEc---------------------------------
Q psy12697        265 VLRHCI-SKG-GTEVPSNKDVTSLDWNNNGSFLATGSYDGY-ARIWT---------------------------------  308 (602)
Q Consensus       265 ~~~~~~-~~~-~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~-i~i~~---------------------------------  308 (602)
                      ...... ... ............+.|+|||+.|+....|.. +..|.                                 
T Consensus       153 ~~~~~~g~~d~~~~~~~~~~~~~~~wSPDGk~ia~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~v  232 (470)
T d2bgra1         153 EDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFV  232 (470)
T ss_dssp             TTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEE
T ss_pred             CCcccccccceeeeeeecCCccccEECCCCCccceeEecCCcCceEEEEeeccCCCCCCeeeeeccccccccCCcceEEE
Confidence            000000 000 000012244567889999999998765432 32221                                 


Q ss_pred             --CCCcceee------------cccccCCeEEEEEccCCCEEEEEe-cCC-----cEEEEeCCCCceeEEeee------c
Q psy12697        309 --SDGSLKST------------LGQHKGPIFALKWNKRGNYILSAG-VDK-----TTIIWDAASGQCEQQFSF------H  362 (602)
Q Consensus       309 --~~~~~~~~------------~~~~~~~i~~~~~~~~~~~l~~~~-~dg-----~i~~wd~~~~~~~~~~~~------~  362 (602)
                        +.+.....            .......+..+.|.+++..++... ..+     .+..+|..++........      .
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~r~~~~~~~~~~~~d~~tg~~~~~~~~~~~~~~~  312 (470)
T d2bgra1         233 VNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMST  312 (470)
T ss_dssp             EEGGGCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECS
T ss_pred             EECCCcceeeeccccccCCccccCCCCceEEEEEEcCCCceeEEEeeccCCceEEEEEEecCCCCcEEEEEEEeeeeeec
Confidence              11000000            001122356778888876555432 221     233445555544332110      0


Q ss_pred             -------cCCeeeeeccCCCe-EEEeeCCCeEE--EEEcCCCceeeEeccCCCCeEEEEECCCCCEE-EEEECCC----e
Q psy12697        363 -------SAPALDVDWQSNTS-FASCSTDQHIH--VCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLL-ASCSDDM----T  427 (602)
Q Consensus       363 -------~~~~~~~~~~~~~~-~~~~~~~~~i~--i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l-~~~~~dg----~  427 (602)
                             ........+.+++. ++....+|..+  +|+...+.+ ..+..+...|..+ ++++++.+ +++..++    .
T Consensus       313 ~~~i~~~~~~~~~~~~~~~~~~~~~s~~dg~~~ly~~~~~g~~~-~~lt~g~~~v~~~-~~~d~~~iyf~a~~~~~~p~~  390 (470)
T d2bgra1         313 TGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDC-TFITKGTWEVIGI-EALTSDYLYYISNEYKGMPGG  390 (470)
T ss_dssp             SSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSCC-EESCCSSSCEEEE-EEECSSEEEEEESCGGGCTTC
T ss_pred             cceeecccCCCceeeecCCCcEEEEeccCcCceeEEEeccCCce-eeeccCCeeEEEE-EEECCCEEEEEEecCCCCcce
Confidence                   11111122223333 44555666554  455544443 4444445556665 33344443 3443322    1


Q ss_pred             EEEE--eCCCCeeeEeeccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEE---EEeCCC
Q psy12697        428 LKIW--SLDKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYIL---SAGVDK  502 (602)
Q Consensus       428 i~iw--d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~---s~~~dg  502 (602)
                      -.||  ++..+.....+.                              ..+..|...+..++|||||+|++   ++...-
T Consensus       391 ~~ly~v~~~g~~~~~~lt------------------------------~~~~~~~~~~~s~~fSpdgky~~~~~s~~~~P  440 (470)
T d2bgra1         391 RNLYKIQLSDYTKVTCLS------------------------------CELNPERCQYYSVSFSKEAKYYQLRCSGPGLP  440 (470)
T ss_dssp             BEEEEEETTCTTCEEESS------------------------------TTTSTTTBCBEEEEECTTSSEEEEEECSBSSC
T ss_pred             EEEEEEECCCCCceeEec------------------------------ccccCCCCCEEEEEECCCCCEEEEEecCCCCC
Confidence            1233  333222222111                              12345777888999999999988   334455


Q ss_pred             eEEEEeCCCCceeeeecc
Q psy12697        503 TTIIWDAASGQCEQQFSF  520 (602)
Q Consensus       503 ~i~iwd~~~~~~~~~~~~  520 (602)
                      .+.+|+..+++.+..+..
T Consensus       441 ~~~l~~~~~g~~v~~le~  458 (470)
T d2bgra1         441 LYTLHSSVNDKGLRVLED  458 (470)
T ss_dssp             EEEEEETTTTEEEEEEEC
T ss_pred             eEEEEECCCCCEEEEEec
Confidence            689999999999988864

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.70  E-value=3e-16  Score=149.90  Aligned_cols=288  Identities=10%  Similarity=-0.049  Sum_probs=167.9

Q ss_pred             cceeeeecccceeeeeeeccCCceEEEEECCCCCeEEEee----------CCceEEEEecCCceeEEEeeccCceEEEEe
Q psy12697        120 LTLPLWDVERGECLNTLTRHTEPVYSVAFSPDGKFLASGS----------FDKCVHIWSARTGQLVHSYKGTGGIFEVCW  189 (602)
Q Consensus       120 ~~i~vwd~~~~~~~~~l~~h~~~V~~~~~s~d~~~l~s~~----------~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~  189 (602)
                      ..|.+||..+++.+.++.++..+  .++|+|||++|++.+          .|+.|.+||..+++.+..+..+....    
T Consensus        46 ~~~~~~d~~~~~~~~~~~~~~~~--~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~----  119 (368)
T d1mdah_          46 TENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPR----  119 (368)
T ss_dssp             EEEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCS----
T ss_pred             ceEEEEeCCCCcEEEEEeCCCCC--cceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCccce----
Confidence            45778899999999999888765  589999999998754          47889999999999887665321100    


Q ss_pred             CCCCCCCCCCCCccccccccccCCcceEeeCCCcceEEEEEcCCCCEEEEee-CCCcEEEEeCCCCCCCCCccceEEEEE
Q psy12697        190 NSRGTPPNPPESMEVDASIEIPQSKATKLIGHESEVFICAWNPVKDFLASGS-GDSTARIWDMTDSTKKDPKELQIVLRH  268 (602)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~s~~-~dg~i~iw~~~~~~~~~~~~~~~~~~~  268 (602)
                                                   .........++|+|||++|+++. .++.+.+||+.+.+.......      
T Consensus       120 -----------------------------~~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~~------  164 (368)
T d1mdah_         120 -----------------------------FSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKS------  164 (368)
T ss_dssp             -----------------------------CCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEEC------
T ss_pred             -----------------------------ecccCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcEeEEeec------
Confidence                                         00111223589999999998776 579999999987653211100      


Q ss_pred             EecCCCcccCCCCceeEEeeCCCCCeEEEEeCCCeEEEEcCCCcceeecccccCCeEEEEEccCCCEEEEEecCCcEEEE
Q psy12697        269 CISKGGTEVPSNKDVTSLDWNNNGSFLATGSYDGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIW  348 (602)
Q Consensus       269 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~w  348 (602)
                         .......+......+.+++||+.++....++....|....   .....+...+....+.+++..+.+.  .+.+.++
T Consensus       165 ---~~~~~~~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~~~~~~--~~~v~~~  236 (368)
T d1mdah_         165 ---ASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGA---QCTGAQNCSSQAAQANYPGMLVWAV--ASSILQG  236 (368)
T ss_dssp             ---SSCCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCC---CSCTTSCBCSCCEEETTTTEEEECB--SSCCEEE
T ss_pred             ---cCcceEccCCCceEEEEcCCCCEEEEEecCCceeeeeeec---ccccccccceeecccccCcEEEEec--CCCEEEE
Confidence               0000000011122334444444433333322222221110   1122344455567777777655543  4556666


Q ss_pred             eCCCCceeEEeeeccCCeeeeeccCCCeEEEeeCCCeEEEEEcCCCceeeEec--cCCCCeEEEEECCCCCEEEEEECC-
Q psy12697        349 DAASGQCEQQFSFHSAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFE--GHTNEVNAIKWDPQGLLLASCSDD-  425 (602)
Q Consensus       349 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~d-  425 (602)
                      +...+......                               ...........  ........++++|++..++....+ 
T Consensus       237 ~~~~~~~~~~~-------------------------------~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~  285 (368)
T d1mdah_         237 DIPAAGATMKA-------------------------------AIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEH  285 (368)
T ss_dssp             ECCSSCCEEEC-------------------------------CCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEEC
T ss_pred             eecCCceEEEe-------------------------------ecccccceeeeeeecCCCceeEEEcCCCCEEEEEecCC
Confidence            66544332211                               11100000000  000112346677777766554322 


Q ss_pred             --------CeEEEEeCCCCeeeEeeccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCC--EE
Q psy12697        426 --------MTLKIWSLDKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGN--YI  495 (602)
Q Consensus       426 --------g~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~--~l  495 (602)
                              ..|.+||..+++.+.++..                                   ...+..++|+|||+  ++
T Consensus       286 ~~~~~~~~~~v~v~D~~t~~~~~~~~~-----------------------------------~~~~~~~a~spDG~~~ly  330 (368)
T d1mdah_         286 SRSCLAAAENTSSVTASVGQTSGPISN-----------------------------------GHDSDAIIAAQDGASDNY  330 (368)
T ss_dssp             SSCTTSCEEEEEEEESSSCCEEECCEE-----------------------------------EEEECEEEECCSSSCEEE
T ss_pred             CceeecCCceEEEEECCCCcEeEEecC-----------------------------------CCceeEEEECCCCCEEEE
Confidence                    3589999999887766542                                   22355677778886  34


Q ss_pred             EEEeCCCeEEEEeCCCCceeeeecccC
Q psy12697        496 LSAGVDKTTIIWDAASGQCEQQFSFHS  522 (602)
Q Consensus       496 ~s~~~dg~i~iwd~~~~~~~~~~~~~~  522 (602)
                      +++..|+.|++||..+++.+..+....
T Consensus       331 ~s~~~~~~v~v~D~~tgk~~~~i~~g~  357 (368)
T d1mdah_         331 ANSAGTEVLDIYDAASDQDQSSVELDK  357 (368)
T ss_dssp             EEETTTTEEEEEESSSCEEEEECCCCS
T ss_pred             EEeCCCCeEEEEECCCCCEEEEEECCC
Confidence            567788999999999999999887543

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.66  E-value=1.2e-16  Score=150.47  Aligned_cols=337  Identities=10%  Similarity=0.016  Sum_probs=209.2

Q ss_pred             EEEeeCCceEEEEecCCceeEEEeeccCceEEEEeCCCCCCCCCCCCccccccccccCCcceEeeCCCcceEEEEEcCCC
Q psy12697        155 LASGSFDKCVHIWSARTGQLVHSYKGTGGIFEVCWNSRGTPPNPPESMEVDASIEIPQSKATKLIGHESEVFICAWNPVK  234 (602)
Q Consensus       155 l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~  234 (602)
                      ++|++.+|.|+||++.+++.++.+.        .|++++......... . ..+.........-..|........++|||
T Consensus        14 f~Sgg~sG~V~V~dlpS~r~l~~Ip--------Vfspd~~~g~g~~~e-s-~~vl~~~~~~~~gd~hhP~~s~t~gtpDG   83 (441)
T d1qnia2          14 FWSGGHQGEVRVLGVPSMRELMRIP--------VFNVDSATGWGITNE-S-KEILGGDQQYLNGDCHHPHISMTDGRYDG   83 (441)
T ss_dssp             EEECBTTCCEEEEEETTTEEEEEEC--------SSSBCTTTCTTTSHH-H-HHHHCSSSCCSCCCBCCCEEEEETTEEEE
T ss_pred             EEeCCCCCcEEEEeCCCCcEEEEEE--------eEcCCCCEEEEECCc-c-ceEEecccccccCcccCCCcceecccCCC
Confidence            5678899999999999999998875        366666543222111 0 00101111112223455566667778999


Q ss_pred             CEEEEe-eCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEeeCCCCCe--EEEEeCCC---------
Q psy12697        235 DFLASG-SGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSF--LATGSYDG---------  302 (602)
Q Consensus       235 ~~l~s~-~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~--l~~~~~dg---------  302 (602)
                      ++|++. ..+..|.++|+.+.+....               ...+....+..++|+|+|+.  ++..+.+.         
T Consensus        84 r~lfV~d~~~~rVavIDl~t~k~~~i---------------i~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~  148 (441)
T d1qnia2          84 KYLFINDKANTRVARIRLDIMKTDKI---------------THIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTD  148 (441)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEE---------------EECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSC
T ss_pred             CEEEEEcCCCCEEEEEECCCCcEeeE---------------EecCCCCCccceEEeccCCEEEEEeccCCcccccCcccc
Confidence            988665 4688999999988754211               11334567899999999984  43333322         


Q ss_pred             --------eEEEEcCCCcceeecccccCCeEEEEEccCCCEEEEEecCC-cEEEEeCCCCceeEEeeeccCCeeeeeccC
Q psy12697        303 --------YARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDK-TTIIWDAASGQCEQQFSFHSAPALDVDWQS  373 (602)
Q Consensus       303 --------~i~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg-~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~  373 (602)
                              .+..+|...........-.+....+.|+|+|+++++++.+. .+..++..+......+.... ......+.+
T Consensus       149 ~~~~~~~~~~~~iD~~t~~v~~qI~v~~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n-~p~~~~~~~  227 (441)
T d1qnia2         149 FSLDNSYTMFTAIDAETMDVAWQVIVDGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFN-VERIAAAVK  227 (441)
T ss_dssp             CCGGGEEEEEEEEETTTCSEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEE-HHHHHHHHH
T ss_pred             cccccccceEEeecCccceeeEEEecCCCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCC-ccceEEEec
Confidence                    12335544322221112234577899999999999887653 33334444443333322221 123344566


Q ss_pred             CCeEEEeeCCCeEEEEEcCCCceeeEeccCCCCeEEEEECCCCCEEEE-EECCCeEEEEeCCCCeeeEeeccccccEEEE
Q psy12697        374 NTSFASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLAS-CSDDMTLKIWSLDKDNCVHDLQAHNKEIYTI  452 (602)
Q Consensus       374 ~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~-~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~  452 (602)
                      ++.++..+.++.+.+++....+.+..+..... ...+.++|||+++++ +..+++|.+||+.+...  .+..+.....++
T Consensus       228 dGk~~~v~~~~v~vvd~~~~~~v~~~IPvgks-PhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~--~~~~~~~~~~~~  304 (441)
T d1qnia2         228 AGNFKTIGDSKVPVVDGRGESEFTRYIPVPKN-PHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDD--LFEDKIELRDTI  304 (441)
T ss_dssp             TTCCBCCTTCCCCEEECSSSCSSEEEECCBSS-CCCEEECTTSCEEEEECTTSSBEEEEEGGGHHH--HTTTSSCGGGGE
T ss_pred             CCCEEEeCCCCcEEEEcccCCceEEEEeCCCC-ccCceECCCCCEEEEeCCcCCcEEEEEeehhhh--HhhccCCcceEE
Confidence            77776667778888888777777777776544 578999999998755 56789999999875321  112211111112


Q ss_pred             EECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCC----------ceeeee----
Q psy12697        453 KWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASG----------QCEQQF----  518 (602)
Q Consensus       453 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~~~~----------~~~~~~----  518 (602)
                      ...+.                     ..-.....+|+++|..+.+...|..|..|++...          ..+..+    
T Consensus       305 ~~~~~---------------------~glgplh~~fd~~g~~yts~~~ds~v~kw~~~~~~~~~~~~~~~~v~~~~~v~y  363 (441)
T d1qnia2         305 VAEPE---------------------LGLGPLHTTFDGRGNAYTTLFIDSQVCKWNIADAIKHYNGDRVNYIRQKLDVQY  363 (441)
T ss_dssp             EECCB---------------------CCSCEEEEEECSSSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSS
T ss_pred             Eeecc---------------------cccCcccceecCCceEEEcccccceEEEeccchhhhhhccCCCceeEecccccc
Confidence            21111                     1123456689999998889999999999997421          122333    


Q ss_pred             -cccCCCeeEeeecCCc-eEEEeeC
Q psy12697        519 -SFHSAPALDVDWQSNT-SFASCST  541 (602)
Q Consensus       519 -~~~~~~v~~~~~s~~~-~l~~~~~  541 (602)
                       .+|...+.+.+++||| +|++++.
T Consensus       364 ~~GH~~~~~~~t~~pdGk~l~s~~k  388 (441)
T d1qnia2         364 QPGHNHASLTESRDADGKWLVVLSK  388 (441)
T ss_dssp             CEEEEEETTTTSTTCCCCEEEEEES
T ss_pred             CCCCCccccccccCCCCcEEEecCc
Confidence             5788888889999999 9999943

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.65  E-value=1.1e-15  Score=145.77  Aligned_cols=294  Identities=10%  Similarity=-0.016  Sum_probs=186.1

Q ss_pred             CCcceEEEEEcCCCCEE--E-EeeCCCc--EEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEeeCCCCCeE
Q psy12697        221 HESEVFICAWNPVKDFL--A-SGSGDST--ARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFL  295 (602)
Q Consensus       221 h~~~v~~~~~~~~~~~l--~-s~~~dg~--i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l  295 (602)
                      +.++...++..++++..  + ....++.  +.+||..+++...     .. .            ......++|+|||+.|
T Consensus        18 ~~g~~~~~a~~~~~~~~~v~~~~~~~g~~~~~~~d~~~~~~~~-----~~-~------------~~~~~~~a~spDg~~i   79 (368)
T d1mdah_          18 SDGSSCDHGPGAISRRSHITLPAYFAGTTENWVSCAGCGVTLG-----HS-L------------GAFLSLAVAGHSGSDF   79 (368)
T ss_dssp             CCCCCBCCCCCCCTTEEEEEECTTTCSSEEEEEEETTTTEEEE-----EE-E------------ECTTCEEEECTTSSCE
T ss_pred             cCCCccccccCCCCcceeEEeeccCCCcceEEEEeCCCCcEEE-----EE-e------------CCCCCcceECCCCCEE
Confidence            34444555667777643  2 2344555  4555766554311     11 0            0123358999999999


Q ss_pred             EEEe----------CCCeEEEEcCC-Ccceeeccccc-------CCeEEEEEccCCCEEEEEe-cCCcEEEEeCCCCcee
Q psy12697        296 ATGS----------YDGYARIWTSD-GSLKSTLGQHK-------GPIFALKWNKRGNYILSAG-VDKTTIIWDAASGQCE  356 (602)
Q Consensus       296 ~~~~----------~dg~i~i~~~~-~~~~~~~~~~~-------~~i~~~~~~~~~~~l~~~~-~dg~i~~wd~~~~~~~  356 (602)
                      ++.+          .++.|.+||.. ++....+..+.       .....++|+|||++|+++. .++.+.+||+.+++..
T Consensus        80 ~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~  159 (368)
T d1mdah_          80 ALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDD  159 (368)
T ss_dssp             EEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEE
T ss_pred             EEEcccCccccccccCCeEEEEECCCCcEeeeecCCccceecccCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcEe
Confidence            8764          36789999976 44444443221       1234689999999998776 5799999999999988


Q ss_pred             EEeeeccCCeeeeeccCCCeEEEeeCCCeEEEEEcCCCceeeE------eccCCCCeEEEEECCCCCEEEEEECCCeEEE
Q psy12697        357 QQFSFHSAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKS------FEGHTNEVNAIKWDPQGLLLASCSDDMTLKI  430 (602)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~------~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i  430 (602)
                      ..+..+....  +...+...++..+.||.+.++++........      +..+...+....+.+++..+.+.  .+.+.+
T Consensus       160 ~~~~~~~~~~--~~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~--~~~v~~  235 (368)
T d1mdah_         160 QLTKSASCFH--IHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAV--ASSILQ  235 (368)
T ss_dssp             EEEECSSCCC--CEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEECB--SSCCEE
T ss_pred             EEeeccCcce--EccCCCceEEEEcCCCCEEEEEecCCceeeeeeecccccccccceeecccccCcEEEEec--CCCEEE
Confidence            8876654432  2223345677788899999888876543222      23344456677888888766554  455677


Q ss_pred             EeCCCCeeeEeec--cccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCC-------
Q psy12697        431 WSLDKDNCVHDLQ--AHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVD-------  501 (602)
Q Consensus       431 wd~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d-------  501 (602)
                      +++..+.......  ..........+                        .......+++++++..++....+       
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~  291 (368)
T d1mdah_         236 GDIPAAGATMKAAIDGNESGRKADNF------------------------RSAGFQMVAKLKNTDGIMILTVEHSRSCLA  291 (368)
T ss_dssp             EECCSSCCEEECCCCSSCTHHHHTTE------------------------EECSSSCEEEETTTTEEEEEEEECSSCTTS
T ss_pred             EeecCCceEEEeecccccceeeeeee------------------------cCCCceeEEEcCCCCEEEEEecCCCceeec
Confidence            7766544332111  10000000000                        11223347788888877655332       


Q ss_pred             --CeEEEEeCCCCceeeeecccCCCeeEeeecCCc-e--EEEeeCCCcEEEeecCCCCceeeeec
Q psy12697        502 --KTTIIWDAASGQCEQQFSFHSAPALDVDWQSNT-S--FASCSTDQHIHVCKLHSDKPVKSFEG  561 (602)
Q Consensus       502 --g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~-~--l~~~~~d~~i~iw~~~~~~~~~~~~~  561 (602)
                        ..|.+||..+++.+..+. +...+.+++|+||| .  ++++..|+.|++||..+++.+.+++.
T Consensus       292 ~~~~v~v~D~~t~~~~~~~~-~~~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~tgk~~~~i~~  355 (368)
T d1mdah_         292 AAENTSSVTASVGQTSGPIS-NGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVEL  355 (368)
T ss_dssp             CEEEEEEEESSSCCEEECCE-EEEEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCC
T ss_pred             CCceEEEEECCCCcEeEEec-CCCceeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEEEC
Confidence              359999999999988877 44678899999998 3  45667889999999999888877764

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.57  E-value=2.1e-15  Score=141.90  Aligned_cols=303  Identities=10%  Similarity=0.051  Sum_probs=184.1

Q ss_pred             eeccceeeeecccceeeeeeec------------------------------cCCceEEEEECCCCCeEEEee-CCceEE
Q psy12697        117 VHRLTLPLWDVERGECLNTLTR------------------------------HTEPVYSVAFSPDGKFLASGS-FDKCVH  165 (602)
Q Consensus       117 ~~~~~i~vwd~~~~~~~~~l~~------------------------------h~~~V~~~~~s~d~~~l~s~~-~d~~v~  165 (602)
                      .+.++|+|||+.+++.++++.-                              |.-......++|||++|+... .+++|.
T Consensus        18 g~sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpDGr~lfV~d~~~~rVa   97 (441)
T d1qnia2          18 GHQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYDGKYLFINDKANTRVA   97 (441)
T ss_dssp             BTTCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEEEEEEEEEETTTTEEE
T ss_pred             CCCCcEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccCCCCEEEEEcCCCCEEE
Confidence            4578999999999988877532                              333455566789999996654 789999


Q ss_pred             EEecCCceeEEEeeccCceEEEEeCCCCCCCCCCCCccccccccccCCcceEeeCCCcceEEEEEcCCCC--EEEEeeCC
Q psy12697        166 IWSARTGQLVHSYKGTGGIFEVCWNSRGTPPNPPESMEVDASIEIPQSKATKLIGHESEVFICAWNPVKD--FLASGSGD  243 (602)
Q Consensus       166 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~--~l~s~~~d  243 (602)
                      ++|+++++....+..                                       .+...+..++|+|+++  +++..+.+
T Consensus        98 vIDl~t~k~~~ii~i---------------------------------------P~g~gphgi~~spdg~t~YV~~~~~~  138 (441)
T d1qnia2          98 RIRLDIMKTDKITHI---------------------------------------PNVQAIHGLRLQKVPKTNYVFCNAEF  138 (441)
T ss_dssp             EEETTTTEEEEEEEC---------------------------------------TTCCCEEEEEECCSSBCCEEEEEECS
T ss_pred             EEECCCCcEeeEEec---------------------------------------CCCCCccceEEeccCCEEEEEeccCC
Confidence            999999988764432                                       2345566777777775  34333333


Q ss_pred             Cc-----------------EEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEeeCCCCCeEEEEeCCC-eEE
Q psy12697        244 ST-----------------ARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFLATGSYDG-YAR  305 (602)
Q Consensus       244 g~-----------------i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg-~i~  305 (602)
                      ..                 +..+|..+.....                 ..+.......++++|+|+++++.+.+. .+.
T Consensus       139 ~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v~~-----------------qI~v~~~p~~v~~spdGk~a~vt~~nse~~~  201 (441)
T d1qnia2         139 VIPQPNDGTDFSLDNSYTMFTAIDAETMDVAW-----------------QVIVDGNLDNTDADYTGKYATSTCYNSERAV  201 (441)
T ss_dssp             CEESSCSSSCCCGGGEEEEEEEEETTTCSEEE-----------------EEEESSCCCCEEECSSSSEEEEEESCTTCCS
T ss_pred             cccccCcccccccccccceEEeecCccceeeE-----------------EEecCCCccceEECCCCCEEEEEecCCCceE
Confidence            21                 2234443322110                 011134578899999999999887664 222


Q ss_pred             EEcCC-CcceeecccccCCeEEEEEccCCCEEEEEecCCcEEEEeCCCCceeEEeeeccCCeeeeeccCCCeE--EEeeC
Q psy12697        306 IWTSD-GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTSF--ASCST  382 (602)
Q Consensus       306 i~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~  382 (602)
                      .++.. ......+... ..-..+.++|+|+++..+ .++.+.+++....+.+..+..... ...+..+|++.+  +++..
T Consensus       202 ~id~~t~~~~d~i~v~-n~p~~~~~~~dGk~~~v~-~~~v~vvd~~~~~~v~~~IPvgks-PhGv~vSPDGkyl~~~~~~  278 (441)
T d1qnia2         202 DLAGTMRNDRDWVVVF-NVERIAAAVKAGNFKTIG-DSKVPVVDGRGESEFTRYIPVPKN-PHGLNTSPDGKYFIANGKL  278 (441)
T ss_dssp             SHHHHTCSSBCEEEEE-EHHHHHHHHHTTCCBCCT-TCCCCEEECSSSCSSEEEECCBSS-CCCEEECTTSCEEEEECTT
T ss_pred             EEeccCcceEEEEEeC-CccceEEEecCCCEEEeC-CCCcEEEEcccCCceEEEEeCCCC-ccCceECCCCCEEEEeCCc
Confidence            22211 1111111000 011223457888876554 467888888777777777766544 577888998774  45667


Q ss_pred             CCeEEEEEcCCCce--------eeEeccC---CCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeeeEeecccc-ccEE
Q psy12697        383 DQHIHVCKLHSDKP--------VKSFEGH---TNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHDLQAHN-KEIY  450 (602)
Q Consensus       383 ~~~i~i~d~~~~~~--------~~~~~~~---~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~i~  450 (602)
                      ++++.+||+.+.+.        ...+.++   .-.....+|+++|..+.+.+.|..|..|++...  +..+.+.. ..+.
T Consensus       279 ~~tvsv~d~~k~~~~~~~~~~~~~~~~~~~~~glgplh~~fd~~g~~yts~~~ds~v~kw~~~~~--~~~~~~~~~~~v~  356 (441)
T d1qnia2         279 SPTVSVIAIDKLDDLFEDKIELRDTIVAEPELGLGPLHTTFDGRGNAYTTLFIDSQVCKWNIADA--IKHYNGDRVNYIR  356 (441)
T ss_dssp             SSBEEEEEGGGHHHHTTTSSCGGGGEEECCBCCSCEEEEEECSSSEEEEEETTTTEEEEEEHHHH--HHHHTTCCCCCEE
T ss_pred             CCcEEEEEeehhhhHhhccCCcceEEEeecccccCcccceecCCceEEEcccccceEEEeccchh--hhhhccCCCceeE
Confidence            89999999865221        1111111   112455789999998999999999999998421  11111100 0010


Q ss_pred             -EEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEe
Q psy12697        451 -TIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAG  499 (602)
Q Consensus       451 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~  499 (602)
                       .+..                   ....+|...+.+.+++|||+||++++
T Consensus       357 ~~~~v-------------------~y~~GH~~~~~~~t~~pdGk~l~s~~  387 (441)
T d1qnia2         357 QKLDV-------------------QYQPGHNHASLTESRDADGKWLVVLS  387 (441)
T ss_dssp             EEEEC-------------------SSCEEEEEETTTTSTTCCCCEEEEEE
T ss_pred             ecccc-------------------ccCCCCCccccccccCCCCcEEEecC
Confidence             0000                   01135777777888999999999994

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.24  E-value=5.4e-08  Score=87.31  Aligned_cols=237  Identities=11%  Similarity=0.167  Sum_probs=160.0

Q ss_pred             ceeEEeeCCCCCeEEEEeCCCeEEEEcCCCcceeeccc------ccCCeEEEEEccCC-CEEEEE-ecCCcEEEEeCCCC
Q psy12697        282 DVTSLDWNNNGSFLATGSYDGYARIWTSDGSLKSTLGQ------HKGPIFALKWNKRG-NYILSA-GVDKTTIIWDAASG  353 (602)
Q Consensus       282 ~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~------~~~~i~~~~~~~~~-~~l~~~-~~dg~i~~wd~~~~  353 (602)
                      ....++++++|+.+++-..++.|++||.++..+..+..      .......+.+.++. ..+++. +.++.|..++. .+
T Consensus        24 ~P~gvavd~dg~i~VaD~~n~rI~v~d~~G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~g  102 (279)
T d1q7fa_          24 EPSGVAVNAQNDIIVADTNNHRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQ-YG  102 (279)
T ss_dssp             CEEEEEECTTCCEEEEEGGGTEEEEECTTSCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECT-TS
T ss_pred             CccEEEEcCCCCEEEEECCCCEEEEEeCCCCEEEEecccCCCcccccccccccccccccccceeccCCccccccccc-cc
Confidence            46899999999988887788999999999877665532      12234556665554 344433 34456777775 45


Q ss_pred             ceeEEeee-ccCCeeeeeccCCCeEEEe-eCCCeEEEEEcCCCceeeEe--ccCCCCeEEEEECCCCCEEEEEECCCeEE
Q psy12697        354 QCEQQFSF-HSAPALDVDWQSNTSFASC-STDQHIHVCKLHSDKPVKSF--EGHTNEVNAIKWDPQGLLLASCSDDMTLK  429 (602)
Q Consensus       354 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~i~i~d~~~~~~~~~~--~~~~~~i~~~~~~~~~~~l~~~~~dg~i~  429 (602)
                      +....+.. .......++..+++.++.+ ...+.+.+++.. ++.+..+  ..+......++++++++.+++....+.|+
T Consensus       103 ~~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~-g~~~~~~g~~~~~~~~~~i~~d~~g~i~v~d~~~~~V~  181 (279)
T d1q7fa_         103 QFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVK  181 (279)
T ss_dssp             CEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEE
T ss_pred             cceeecCCCcccccceeccccCCcEEEEeeccceeeEeccC-CceeecccccccccccceeeeccceeEEeeecccccee
Confidence            55555432 2334556667676655444 445667777754 4445544  34556788999999999988888889999


Q ss_pred             EEeCCCCeeeEeeccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeC-CCeEEEEe
Q psy12697        430 IWSLDKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGV-DKTTIIWD  508 (602)
Q Consensus       430 iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~-dg~i~iwd  508 (602)
                      +||.. ++.+.++..                                .+.......|++.++|+++++-.. ++.|.+|+
T Consensus       182 ~~d~~-G~~~~~~g~--------------------------------~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~  228 (279)
T d1q7fa_         182 VFNYE-GQYLRQIGG--------------------------------EGITNYPIGVGINSNGEILIADNHNNFNLTIFT  228 (279)
T ss_dssp             EEETT-CCEEEEESC--------------------------------TTTSCSEEEEEECTTCCEEEEECSSSCEEEEEC
T ss_pred             eeecC-Cceeeeecc--------------------------------cccccCCcccccccCCeEEEEECCCCcEEEEEC
Confidence            99964 444444311                                012334567889999997777544 45799999


Q ss_pred             CCCCceeeeeccc--CCCeeEeeecCCceEEEeeCCCcEEEeecCCCC
Q psy12697        509 AASGQCEQQFSFH--SAPALDVDWQSNTSFASCSTDQHIHVCKLHSDK  554 (602)
Q Consensus       509 ~~~~~~~~~~~~~--~~~v~~~~~s~~~~l~~~~~d~~i~iw~~~~~~  554 (602)
                      . +|+.+..+...  ......+++.|||.|++++.++.|++|+.....
T Consensus       229 ~-~G~~~~~~~~~~~~~~p~~vav~~dG~l~V~~~n~~v~~fr~~~~~  275 (279)
T d1q7fa_         229 Q-DGQLISALESKVKHAQCFDVALMDDGSVVLASKDYRLYIYRYVQLA  275 (279)
T ss_dssp             T-TSCEEEEEEESSCCSCEEEEEEETTTEEEEEETTTEEEEEECSCCC
T ss_pred             C-CCCEEEEEeCCCCCCCEeEEEEeCCCcEEEEeCCCeEEEEEeeeec
Confidence            4 58877776533  235788999999966667789999999976543

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.23  E-value=5.4e-09  Score=92.94  Aligned_cols=237  Identities=7%  Similarity=-0.052  Sum_probs=150.7

Q ss_pred             CceEEEEECCCCCeEEEe-eCCceEEEEecCCceeEEEeeccCceEEEEeCCCCCCCCCCCCccccccccccCCcceEee
Q psy12697        141 EPVYSVAFSPDGKFLASG-SFDKCVHIWSARTGQLVHSYKGTGGIFEVCWNSRGTPPNPPESMEVDASIEIPQSKATKLI  219 (602)
Q Consensus       141 ~~V~~~~~s~d~~~l~s~-~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  219 (602)
                      -....++++++|++.++. +..+.+..++..........                                        .
T Consensus        14 ~~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~~----------------------------------------~   53 (260)
T d1rwia_          14 LSPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLP----------------------------------------F   53 (260)
T ss_dssp             CCEEEEEECTTCCEEEEECSSSCEEEEEC----CEEECC----------------------------------------C
T ss_pred             CCCCEEEEcCCCCEEEEEcCCCCEEEEEcCCCceEEEec----------------------------------------c
Confidence            445899999999966654 45577777665433221100                                        0


Q ss_pred             CCCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEeeCCCCCeEEEEe
Q psy12697        220 GHESEVFICAWNPVKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFLATGS  299 (602)
Q Consensus       220 ~h~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  299 (602)
                      +-......++++++++++++....+.+++++-.+......                 .........+++.++++++++-.
T Consensus        54 ~~~~~p~gvav~~~g~i~v~d~~~~~i~~~~~~~~~~~~~-----------------~~~~~~p~~iavd~~g~i~v~d~  116 (260)
T d1rwia_          54 NGLYQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQTVLP-----------------FDGLNYPEGLAVDTQGAVYVADR  116 (260)
T ss_dssp             CSCCSCCCEEECTTCCEEEEETTTEEEEECTTCSCCEECC-----------------CCSCCSEEEEEECTTCCEEEEEG
T ss_pred             CCccCceEEEEcCCCCEEEeeeeeceeeeeeeccceeeee-----------------eeeeeecccccccccceeEeecc
Confidence            0112345678899998877777666676665433321100                 00124568899999999888777


Q ss_pred             CCCeEEEEcCCCcceeecc-cccCCeEEEEEccCCCEEEEEecCCcEEEEeCCCCceeEEeeeccCCeeeeeccCCCeEE
Q psy12697        300 YDGYARIWTSDGSLKSTLG-QHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTSFA  378 (602)
Q Consensus       300 ~dg~i~i~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  378 (602)
                      .+..+..++..+....... ........++++++++.+++...++.|..+|...................+++.+++.++
T Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~~~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~p~gi~~d~~g~l~  196 (260)
T d1rwia_         117 GNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVY  196 (260)
T ss_dssp             GGTEEEEECTTCSSCEECCCCSCCSCCEEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEE
T ss_pred             ccccccccccccceeeeeeecccCCcceeeecCCCCEeeeccccccccccccccceeeeeeccccCCCccceeeeeeeee
Confidence            7778888887765444332 223455789999999988888888899999977654433322334456778887776655


Q ss_pred             Eee-CCCeEEEEEcCCCceeeEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEeCC
Q psy12697        379 SCS-TDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLD  434 (602)
Q Consensus       379 ~~~-~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~  434 (602)
                      ++. ..+.|..++.............-.....|+++++|.++++-..+++|+.++..
T Consensus       197 vsd~~~~~i~~~~~~~~~~~~~~~~~~~~P~~i~~d~~g~l~vad~~~~rI~~i~~~  253 (260)
T d1rwia_         197 VTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSL  253 (260)
T ss_dssp             EEETTTTEEEEECTTCSCCEECCCCSCCCEEEEEECTTCCEEEEEGGGTEEEEECCC
T ss_pred             eeecCCCEEEEEeCCCCeEEEEccCCCCCeEEEEEeCCCCEEEEECCCCEEEEEeCC
Confidence            554 56778888765543222222233567899999999988877777777766543

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.21  E-value=2.5e-09  Score=100.28  Aligned_cols=181  Identities=9%  Similarity=0.050  Sum_probs=102.5

Q ss_pred             CCeEEEEEccCCCEEEEEec-CCcEEEEeCCCCceeEEeeeccCCeeeeeccCCCeEEEeeCCCeEEEEEcCCCceeeEe
Q psy12697        322 GPIFALKWNKRGNYILSAGV-DKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSF  400 (602)
Q Consensus       322 ~~i~~~~~~~~~~~l~~~~~-dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~  400 (602)
                      ..+.++.|+|+|+++++++. ...|.+|+......+....                                    ....
T Consensus       145 ~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~------------------------------------~~~~  188 (365)
T d1jofa_         145 TGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVG------------------------------------SVDA  188 (365)
T ss_dssp             CCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEE------------------------------------EEEC
T ss_pred             CcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeecc------------------------------------ceee
Confidence            34789999999999888764 3456666543221110000                                    0011


Q ss_pred             ccCCCCeEEEEECCCCCEEEEEE-CCCeEEEEeCCCCeeeEeeccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCc
Q psy12697        401 EGHTNEVNAIKWDPQGLLLASCS-DDMTLKIWSLDKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQH  479 (602)
Q Consensus       401 ~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  479 (602)
                      .........++|+|+++++.+.. .+++|.+|++..........     +..+...+.+...          .......+
T Consensus       189 ~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~-----~~~~~~~~~~~~~----------~~~~~~~~  253 (365)
T d1jofa_         189 PDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYT-----HHSFPLIPPGIPD----------RDPETGKG  253 (365)
T ss_dssp             SSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEE-----EEEEESSCTTCCC----------BCTTTSSB
T ss_pred             cCCCCceEEEEECCCCceEEEeccCCCEEEEEEecCCCceEEEE-----eeeeccccccccc----------cccccccc
Confidence            11334678899999999886665 47899999987653322111     0111111111000          00011123


Q ss_pred             cCCeEEEEEccCCCEEEEEeC------CCeEEEEeCCCCceee-e-----ecccCCCeeEeeecC-Cc-eEEE-eeCCCc
Q psy12697        480 KGPIFALKWNKRGNYILSAGV------DKTTIIWDAASGQCEQ-Q-----FSFHSAPALDVDWQS-NT-SFAS-CSTDQH  544 (602)
Q Consensus       480 ~~~v~~i~~s~~~~~l~s~~~------dg~i~iwd~~~~~~~~-~-----~~~~~~~v~~~~~s~-~~-~l~~-~~~d~~  544 (602)
                      ......+.++|||++|+++..      .+.|..|++.....+. .     ..........++++| +| +|++ ...++.
T Consensus       254 ~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~G~~p~~i~~~p~~G~~l~va~~~s~~  333 (365)
T d1jofa_         254 LYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGW  333 (365)
T ss_dssp             SEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCE
T ss_pred             cCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCceeeEeEeeEEEcCCCCccEEEecCCCCCEEEEEeCCCCe
Confidence            445667899999999987643      2237777765432221 1     112234467799998 67 5544 467899


Q ss_pred             EEEeecCCC
Q psy12697        545 IHVCKLHSD  553 (602)
Q Consensus       545 i~iw~~~~~  553 (602)
                      |.+|+++..
T Consensus       334 v~v~~~~~~  342 (365)
T d1jofa_         334 LEIYRWKDE  342 (365)
T ss_dssp             EEEEEEETT
T ss_pred             EEEEEEeCC
Confidence            999987543

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.20  E-value=2.6e-08  Score=89.15  Aligned_cols=238  Identities=18%  Similarity=0.186  Sum_probs=144.6

Q ss_pred             cceeeeecccceeeeeeeccCCceEEEEECCCCCeEEEeeCCc---eEEEEecCCceeEEEeeccCceEEEEeCCCCCCC
Q psy12697        120 LTLPLWDVERGECLNTLTRHTEPVYSVAFSPDGKFLASGSFDK---CVHIWSARTGQLVHSYKGTGGIFEVCWNSRGTPP  196 (602)
Q Consensus       120 ~~i~vwd~~~~~~~~~l~~h~~~V~~~~~s~d~~~l~s~~~d~---~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (602)
                      ..|.|-|.. |...+.+..+...+...+|||||+.||......   .+.+.+..++..                      
T Consensus        19 ~~l~i~d~d-G~~~~~l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~----------------------   75 (269)
T d2hqsa1          19 YELRVSDYD-GYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAV----------------------   75 (269)
T ss_dssp             EEEEEEETT-SCSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE----------------------
T ss_pred             EEEEEEcCC-CCCcEEEecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCce----------------------
Confidence            467888865 666666666788899999999999999765432   355555554443                      


Q ss_pred             CCCCCccccccccccCCcceEeeCCCcceEEEEEcCCCCEEEEeeC-CCcEEEEeCCCCCCCCCccceEEEEEEecCCCc
Q psy12697        197 NPPESMEVDASIEIPQSKATKLIGHESEVFICAWNPVKDFLASGSG-DSTARIWDMTDSTKKDPKELQIVLRHCISKGGT  275 (602)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (602)
                                         ..+..+........|+|+++.++.... ++...++..........               .
T Consensus        76 -------------------~~~~~~~~~~~~~~~spdg~~i~~~~~~~~~~~~~~~~~~~~~~~---------------~  121 (269)
T d2hqsa1          76 -------------------RQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIR---------------Q  121 (269)
T ss_dssp             -------------------EEEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE---------------E
T ss_pred             -------------------eEEeeeecccccceecCCCCeeeEeeecCCccceeecccccccce---------------e
Confidence                               234456777888999999988876554 33333333222211100               0


Q ss_pred             ccCCCCceeEEeeCCCCCeEEEE-eCCC--eEEEEcCCCcceeecccccCCeEEEEEccCCCEEEEEecCC-cEEEEeCC
Q psy12697        276 EVPSNKDVTSLDWNNNGSFLATG-SYDG--YARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDK-TTIIWDAA  351 (602)
Q Consensus       276 ~~~~~~~i~~~~~~~~~~~l~~~-~~dg--~i~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg-~i~~wd~~  351 (602)
                      ............+++++..++.. ..+|  .|...+..+.................|+|+++.++..+.++ ...+|.  
T Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~i~~--  199 (269)
T d2hqsa1         122 VTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAK--  199 (269)
T ss_dssp             CCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEE--
T ss_pred             eeeccccccccccccccccceecccccCCceEeeeecccccceeeecccccccccccccccceeEEEeecCCceeeeE--
Confidence            00112334455677766655544 3444  45566666666666666677778889999999888766543 222221  


Q ss_pred             CCceeEEeeeccCCeeeeeccCCCeEEEeeCCCeEEEEEcCCCceeeEeccCCCCeEEEEECCCCCEEEEEECC---CeE
Q psy12697        352 SGQCEQQFSFHSAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDD---MTL  428 (602)
Q Consensus       352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---g~i  428 (602)
                                                           .+...+..  ....+........|+|||+.|+..+..   ..|
T Consensus       200 -------------------------------------~~~~~~~~--~~~~~~~~~~~p~~SPDG~~i~f~s~~~~~~~l  240 (269)
T d2hqsa1         200 -------------------------------------QDLATGGV--QVLSSTFLDETPSLAPNGTMVIYSSSQGMGSVL  240 (269)
T ss_dssp             -------------------------------------EETTTCCE--EECCCSSSCEEEEECTTSSEEEEEEEETTEEEE
T ss_pred             -------------------------------------eecccccc--eEeecCccccceEECCCCCEEEEEEcCCCCcEE
Confidence                                                 12211111  112233445667899999998766543   468


Q ss_pred             EEEeCCCCeeeEeeccccccEEEEEECC
Q psy12697        429 KIWSLDKDNCVHDLQAHNKEIYTIKWSP  456 (602)
Q Consensus       429 ~iwd~~~~~~~~~~~~~~~~i~~~~~~~  456 (602)
                      .++++..+.. ..+......+...+|+|
T Consensus       241 ~~~~~dg~~~-~~lt~~~g~~~~p~WSP  267 (269)
T d2hqsa1         241 NLVSTDGRFK-ARLPATDGQVKFPAWSP  267 (269)
T ss_dssp             EEEETTSCCE-EECCCSSSEEEEEEECC
T ss_pred             EEEECCCCCE-EEEeCCCCcEEeEEeCC
Confidence            8999876554 45555566677777877

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=99.20  E-value=1.4e-08  Score=92.65  Aligned_cols=241  Identities=10%  Similarity=0.086  Sum_probs=150.6

Q ss_pred             ceeEEeeCCCCCeEEEEeC-------CCeEEEEcCCCcceeeccc-----ccCCeEEEEEccCCCEEEEEecCCcEEEEe
Q psy12697        282 DVTSLDWNNNGSFLATGSY-------DGYARIWTSDGSLKSTLGQ-----HKGPIFALKWNKRGNYILSAGVDKTTIIWD  349 (602)
Q Consensus       282 ~i~~~~~~~~~~~l~~~~~-------dg~i~i~~~~~~~~~~~~~-----~~~~i~~~~~~~~~~~l~~~~~dg~i~~wd  349 (602)
                      ....++|.++|++.++...       +|.|..||..+.....+..     .......+.|.++++.++++...+.+..++
T Consensus        19 g~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~~l~vad~~~~i~~~~   98 (314)
T d1pjxa_          19 GAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRLGLLVVQ   98 (314)
T ss_dssp             TCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTTEEEEEE
T ss_pred             CCeEeEEeCCCCEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeCCCCEEEEEECCCeEEEEe
Confidence            3567889999997776433       4678889987654433321     223457899999999888888777788888


Q ss_pred             CCCCceeEEeeeccC----CeeeeeccCCCeEEEeeCC----------------CeEEEEEcCCCceeeEeccCCCCeEE
Q psy12697        350 AASGQCEQQFSFHSA----PALDVDWQSNTSFASCSTD----------------QHIHVCKLHSDKPVKSFEGHTNEVNA  409 (602)
Q Consensus       350 ~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~----------------~~i~i~d~~~~~~~~~~~~~~~~i~~  409 (602)
                      ...............    ....+.+.+++.+.++...                |.|+.++.. ++. ..+.......+.
T Consensus        99 ~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~d-g~~-~~~~~~~~~pNG  176 (314)
T d1pjxa_          99 TDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQM-IQVDTAFQFPNG  176 (314)
T ss_dssp             TTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCE-EEEEEEESSEEE
T ss_pred             CCCcEEEEEeccccccccCCCcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEeec-Cce-eEeeCCcceeee
Confidence            765533221111111    2456777777766655322                234444332 222 222223334567


Q ss_pred             EEECCCCC-----EEEEEECCCeEEEEeCCCCeeeEeeccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeE
Q psy12697        410 IKWDPQGL-----LLASCSDDMTLKIWSLDKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIF  484 (602)
Q Consensus       410 ~~~~~~~~-----~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  484 (602)
                      ++|+|++.     +.++-+..+.|..||+.....+...+        +...                   .........-
T Consensus       177 i~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~--------~~~~-------------------~~~~~~~~pd  229 (314)
T d1pjxa_         177 IAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKK--------VWGH-------------------IPGTHEGGAD  229 (314)
T ss_dssp             EEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEE--------EEEE-------------------CCCCSSCEEE
T ss_pred             eEECCCCCcceeEEEEEeecccceEEeeccCccccceee--------EEEE-------------------ccccccccce
Confidence            88988764     44444567778888765322211100        0000                   0001122345


Q ss_pred             EEEEccCCCEEEEEeCCCeEEEEeCCCCceeeeecccCCCeeEeeecCCc--eEEEeeCCCcEEEeecC
Q psy12697        485 ALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNT--SFASCSTDQHIHVCKLH  551 (602)
Q Consensus       485 ~i~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~--~l~~~~~d~~i~iw~~~  551 (602)
                      .+++.++|++.++....+.|.+||.+.++.+..+.......++++|.||+  .+++.+.++.|...++.
T Consensus       230 GiavD~~GnlyVa~~~~g~I~~~dp~~g~~~~~i~~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~  298 (314)
T d1pjxa_         230 GMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQ  298 (314)
T ss_dssp             EEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECS
T ss_pred             eeEEecCCcEEEEEcCCCEEEEEeCCCCEEEEEEECCCCCEEEEEEeCCCCEEEEEECCCCcEEEEECC
Confidence            78899999998888888999999999888877777666788999999998  45666677888877764

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.20  E-value=8.1e-09  Score=94.12  Aligned_cols=221  Identities=13%  Similarity=0.095  Sum_probs=127.5

Q ss_pred             ccceeeeeeeccCCceEEEEECCCCCeEEEeeCCceEEEEecCCceeEEEeeccCceEEEEeCCCCCCCCCCCCcccccc
Q psy12697        128 ERGECLNTLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKGTGGIFEVCWNSRGTPPNPPESMEVDAS  207 (602)
Q Consensus       128 ~~~~~~~~l~~h~~~V~~~~~s~d~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  207 (602)
                      ...+.+.++.... .+..++++|||+++++...+++|..|+..... .                                
T Consensus        16 ~~~~v~~~~p~~~-~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g~~-~--------------------------------   61 (302)
T d2p4oa1          16 APAKIITSFPVNT-FLENLASAPDGTIFVTNHEVGEIVSITPDGNQ-Q--------------------------------   61 (302)
T ss_dssp             CCEEEEEEECTTC-CEEEEEECTTSCEEEEETTTTEEEEECTTCCE-E--------------------------------
T ss_pred             CcccEEEECCCCC-CcCCEEECCCCCEEEEeCCCCEEEEEeCCCCE-E--------------------------------
Confidence            3445555554322 58899999999999999999999888855332 1                                


Q ss_pred             ccccCCcceEeeCCCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEe
Q psy12697        208 IEIPQSKATKLIGHESEVFICAWNPVKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLD  287 (602)
Q Consensus       208 ~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  287 (602)
                               .+......+.+++|.++|+++++...++.+..|+........    ....         ..+.......++
T Consensus        62 ---------~~~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~~~~----~~~~---------~~~~~~~~n~i~  119 (302)
T d2p4oa1          62 ---------IHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTV----ETLL---------TLPDAIFLNGIT  119 (302)
T ss_dssp             ---------EEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCE----EEEE---------ECTTCSCEEEEE
T ss_pred             ---------EEEcCCCCcceEEEcCCCCeEEEecCCceEEEEEecccccce----eecc---------ccCCccccceeE
Confidence                     122345678899999999999988888888888765432210    0000         011123455666


Q ss_pred             eCCCCCeEEEEeCCCeEEEEcCCCcceeecccccCCeEEEEEccCCCEEEEEecCCcEEEEeCCCCceeEEeeeccCCee
Q psy12697        288 WNNNGSFLATGSYDGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPAL  367 (602)
Q Consensus       288 ~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~  367 (602)
                      +.++++++++-..++.+..++..+.........          +..                     .............
T Consensus       120 ~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~----------~~~---------------------~~~~~~~~~~~~n  168 (302)
T d2p4oa1         120 PLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEH----------PML---------------------ARSNSESVFPAAN  168 (302)
T ss_dssp             ESSSSEEEEEETTTTEEEEEETTTTEEEEEEEC----------GGG---------------------SCSSTTCCSCSEE
T ss_pred             EccCCCEEeeccccccceeeeccCCcceeEecC----------Ccc---------------------ceeeccCcccccc
Confidence            666666655555555555555443211110000          000                     0000000111223


Q ss_pred             eeeccCCCeEEEeeCCCeEEEEEcCCCceeeE--eccCCCCeEEEEECCCCCEEEEEECCCeEEEEeCCC
Q psy12697        368 DVDWQSNTSFASCSTDQHIHVCKLHSDKPVKS--FEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDK  435 (602)
Q Consensus       368 ~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~--~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~  435 (602)
                      .+.+..+..+++.+..+.|+.++.........  ..........++++++|++.++...++.|..++...
T Consensus       169 gi~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG~l~va~~~~~~V~~i~p~G  238 (302)
T d2p4oa1         169 GLKRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPDR  238 (302)
T ss_dssp             EEEEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECBTTCCEEEECTTC
T ss_pred             cccccCCceeeecCCCCeEEeccccccccccccccccCCCCCcceEECCCCCEEEEEcCCCcEEEECCCC
Confidence            33444445556666677777777665432211  111233456799999999888888889999998654

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.20  E-value=1.9e-08  Score=89.33  Aligned_cols=232  Identities=8%  Similarity=-0.008  Sum_probs=142.7

Q ss_pred             CCeEEEEEccCCCEEEEEe-cCCcEEEEeCCCCceeEEeeeccCCeeeeeccCCCeEEEeeCCCeE-EEEEcCCCceeeE
Q psy12697        322 GPIFALKWNKRGNYILSAG-VDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTSFASCSTDQHI-HVCKLHSDKPVKS  399 (602)
Q Consensus       322 ~~i~~~~~~~~~~~l~~~~-~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i-~i~d~~~~~~~~~  399 (602)
                      .....++++++|+..++.. ..+.+..++...................+++.+++.++++...+.+ ++++..+...+..
T Consensus        14 ~~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~gvav~~~g~i~v~d~~~~~i~~~~~~~~~~~~~   93 (260)
T d1rwia_          14 LSPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQTVLP   93 (260)
T ss_dssp             CCEEEEEECTTCCEEEEECSSSCEEEEEC----CEEECCCCSCCSCCCEEECTTCCEEEEETTTEEEEECTTCSCCEECC
T ss_pred             CCCCEEEEcCCCCEEEEEcCCCCEEEEEcCCCceEEEeccCCccCceEEEEcCCCCEEEeeeeeceeeeeeeccceeeee
Confidence            3457999999999766654 4566777765544332222222334567788787776666655544 4444444433332


Q ss_pred             eccCCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeeeEeeccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCc
Q psy12697        400 FEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQH  479 (602)
Q Consensus       400 ~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  479 (602)
                      .. .......++++++++++++-..+..+..++............                                  .
T Consensus        94 ~~-~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~~~~~----------------------------------~  138 (260)
T d1rwia_          94 FD-GLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFT----------------------------------G  138 (260)
T ss_dssp             CC-SCCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEECCCC----------------------------------S
T ss_pred             ee-eeeecccccccccceeEeeccccccccccccccceeeeeeec----------------------------------c
Confidence            22 235678999999998887766667677776554321111000                                  1


Q ss_pred             cCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeeecccCCCeeEeeecCCc-eEEEeeCCCcEEEeecCCCCceee
Q psy12697        480 KGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNT-SFASCSTDQHIHVCKLHSDKPVKS  558 (602)
Q Consensus       480 ~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~-~l~~~~~d~~i~iw~~~~~~~~~~  558 (602)
                      ......++++++|+++++...++.|..+|.............-.....+++.++| .+++....+.|..++...... ..
T Consensus       139 ~~~p~~i~~~~~g~~~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~~~-~~  217 (260)
T d1rwia_         139 LNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTS-TV  217 (260)
T ss_dssp             CCSCCEEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTTEEEEECTTCSCC-EE
T ss_pred             cCCcceeeecCCCCEeeeccccccccccccccceeeeeeccccCCCccceeeeeeeeeeeecCCCEEEEEeCCCCeE-EE
Confidence            1233578888899988888888999999987654443333344567889999999 666666678888887543321 11


Q ss_pred             eecccccceEEEEecCCcEEEEEECCCCCeEEEeccCCeEE
Q psy12697        559 FEGHTTGQLVHSYKGTGGIFEVCWNSRGDKVGASASDGSVF  599 (602)
Q Consensus       559 ~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~v~  599 (602)
                      +..          ..-.....|+++++|.++++-..++.|+
T Consensus       218 ~~~----------~~~~~P~~i~~d~~g~l~vad~~~~rI~  248 (260)
T d1rwia_         218 LPF----------TGLNTPLAVAVDSDRTVYVADRGNDRVV  248 (260)
T ss_dssp             CCC----------CSCCCEEEEEECTTCCEEEEEGGGTEEE
T ss_pred             Ecc----------CCCCCeEEEEEeCCCCEEEEECCCCEEE
Confidence            110          0113468999999998777766666655

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.19  E-value=2.3e-08  Score=91.02  Aligned_cols=242  Identities=11%  Similarity=0.014  Sum_probs=153.0

Q ss_pred             CceeEEeeCCCCCeEEEEeCCCeEEEEcCCCcceeecccccCCeEEEEEccCCCEEEEEecCCcEEEEeCCCCceeEEee
Q psy12697        281 KDVTSLDWNNNGSFLATGSYDGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFS  360 (602)
Q Consensus       281 ~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~  360 (602)
                      ..+..++++|||+++++...++.|..|+.++... .+......+.+++|+++|+.+++...++.+..|+........   
T Consensus        28 ~~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g~~~-~~~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~~~~---  103 (302)
T d2p4oa1          28 TFLENLASAPDGTIFVTNHEVGEIVSITPDGNQQ-IHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTV---  103 (302)
T ss_dssp             CCEEEEEECTTSCEEEEETTTTEEEEECTTCCEE-EEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCE---
T ss_pred             CCcCCEEECCCCCEEEEeCCCCEEEEEeCCCCEE-EEEcCCCCcceEEEcCCCCeEEEecCCceEEEEEecccccce---
Confidence            4578899999999999999999999999887643 444566789999999999988888777777776643221100   


Q ss_pred             eccCCeeeeeccCCCeEEEeeCCCeEEEEEcCCCceeeEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeeeE
Q psy12697        361 FHSAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVH  440 (602)
Q Consensus       361 ~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~  440 (602)
                                               ..+.+.          ........+++.++++++++.+.++.+..++...+....
T Consensus       104 -------------------------~~~~~~----------~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~  148 (302)
T d2p4oa1         104 -------------------------ETLLTL----------PDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSI  148 (302)
T ss_dssp             -------------------------EEEEEC----------TTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEE
T ss_pred             -------------------------eecccc----------CCccccceeEEccCCCEEeeccccccceeeeccCCccee
Confidence                                     000111          123447789999999998888888989888887654332


Q ss_pred             eeccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeee--
Q psy12697        441 DLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQF--  518 (602)
Q Consensus       441 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~--  518 (602)
                      ........           .             ............+.++. +.++++.+..+.|..++..........  
T Consensus       149 ~~~~~~~~-----------~-------------~~~~~~~~~~ngi~~~~-~~l~~~~~~~~~i~~~~~~~~~~~~~~~~  203 (302)
T d2p4oa1         149 WLEHPMLA-----------R-------------SNSESVFPAANGLKRFG-NFLYVSNTEKMLLLRIPVDSTDKPGEPEI  203 (302)
T ss_dssp             EEECGGGS-----------C-------------SSTTCCSCSEEEEEEET-TEEEEEETTTTEEEEEEBCTTSCBCCCEE
T ss_pred             EecCCccc-----------e-------------eeccCcccccccccccC-CceeeecCCCCeEEecccccccccccccc
Confidence            22111000           0             00111222344555543 344556667888888887654332211  


Q ss_pred             cccCCCeeEeeecCCc-eEEEeeCCCcEEEeecCCCCceeeeecccccceEEEEecCCcEEEEEE---CCCCCeEEEecc
Q psy12697        519 SFHSAPALDVDWQSNT-SFASCSTDQHIHVCKLHSDKPVKSFEGHTTGQLVHSYKGTGGIFEVCW---NSRGDKVGASAS  594 (602)
Q Consensus       519 ~~~~~~v~~~~~s~~~-~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~---spdg~~l~~~~~  594 (602)
                      .........+++.++| .+++...++.|..++.... .........         .-...++++|   +||++.|++++.
T Consensus       204 ~~~~~~pdgia~d~dG~l~va~~~~~~V~~i~p~G~-~~~~~~~~~---------~~~~pt~vafg~~~~D~~~Lyvtt~  273 (302)
T d2p4oa1         204 FVEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPDRS-TTIIAQAEQ---------GVIGSTAVAFGQTEGDCTAIYVVTN  273 (302)
T ss_dssp             EEESCCCSSEEEBTTCCEEEECBTTCCEEEECTTCC-EEEEECGGG---------TCTTEEEEEECCSTTTTTEEEEEEC
T ss_pred             ccCCCCCcceEECCCCCEEEEEcCCCcEEEECCCCC-EEEEEecCC---------CCCCceEEEEcCCCCCCCEEEEECC
Confidence            1133446789999999 7777777888988875422 111111110         1245789999   788999987765


Q ss_pred             CC
Q psy12697        595 DG  596 (602)
Q Consensus       595 dg  596 (602)
                      .|
T Consensus       274 ~g  275 (302)
T d2p4oa1         274 GG  275 (302)
T ss_dssp             TT
T ss_pred             CC
Confidence            53

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.16  E-value=3.1e-08  Score=95.63  Aligned_cols=328  Identities=11%  Similarity=0.147  Sum_probs=176.8

Q ss_pred             EECCCCCeEEEeeCCceEEEEecCCceeEEEeeccCceEEEEeCCCCCCCCCCCCccccccccccCCcceEeeCCCcceE
Q psy12697        147 AFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKGTGGIFEVCWNSRGTPPNPPESMEVDASIEIPQSKATKLIGHESEVF  226 (602)
Q Consensus       147 ~~s~d~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~v~  226 (602)
                      .|.+++.++.. ..+|.|.+||+.+++....+...                                     .-....+.
T Consensus        23 ~W~~~~~~~~~-~~~g~i~~~~~~~~~~~~l~~~~-------------------------------------~~~~~~~~   64 (465)
T d1xfda1          23 KWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGK-------------------------------------KIESLRAI   64 (465)
T ss_dssp             CBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTT-------------------------------------TTTTTTCS
T ss_pred             EEeCCCcEEEE-eCCCcEEEEECCCCCEEEEEcCc-------------------------------------cccccccc
Confidence            47777776643 45788999999988753222110                                     00122455


Q ss_pred             EEEEcCCCCEEEEee---------CCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEeeCCCCCeEEE
Q psy12697        227 ICAWNPVKDFLASGS---------GDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFLAT  297 (602)
Q Consensus       227 ~~~~~~~~~~l~s~~---------~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~  297 (602)
                      ...|+||+++++...         ..+.+.++|+.++.......              .......+....|||||+.+|.
T Consensus        65 ~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~~l~~--------------~~~~~~~l~~~~wSPDG~~iaf  130 (465)
T d1xfda1          65 RYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDP--------------PEVSNAKLQYAGWGPKGQQLIF  130 (465)
T ss_dssp             EEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCC--------------TTCCSCCCSBCCBCSSTTCEEE
T ss_pred             eeEECCCCCeEEEEEcccceeEeeccccEEEEEccCCceeeccC--------------ccCCccccceeeeccCCceEEE
Confidence            678999999887764         34678888988775421110              0011345667899999999988


Q ss_pred             EeCCCeEEEEcCCCccee-ec-ccccC-----------------CeEEEEEccCCCEEEEEecC-CcE------------
Q psy12697        298 GSYDGYARIWTSDGSLKS-TL-GQHKG-----------------PIFALKWNKRGNYILSAGVD-KTT------------  345 (602)
Q Consensus       298 ~~~dg~i~i~~~~~~~~~-~~-~~~~~-----------------~i~~~~~~~~~~~l~~~~~d-g~i------------  345 (602)
                      .. ++.|.+.+..+.... .. .+...                 .-..+.|||||++|+....| ..+            
T Consensus       131 v~-~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~iaf~~~D~s~V~~~~~~~~~~~~  209 (465)
T d1xfda1         131 IF-ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSI  209 (465)
T ss_dssp             EE-TTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSS
T ss_pred             Ee-cceEEEEecCCCceEEEecccCcceeeccccchhhhhhhccccceEEECCCCCeEEEEEecccccceeecccccccc
Confidence            75 567888776543222 11 11111                 12577899999999976532 222            


Q ss_pred             ---------------------EEEeCCCCceeEEeee------ccCCeeeeeccCCCeEEEeeCC-----CeEEEEEcCC
Q psy12697        346 ---------------------IIWDAASGQCEQQFSF------HSAPALDVDWQSNTSFASCSTD-----QHIHVCKLHS  393 (602)
Q Consensus       346 ---------------------~~wd~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~-----~~i~i~d~~~  393 (602)
                                           .++|+.++........      ...-+..+.|++++.+++...+     ..+.++|..+
T Consensus       210 ~p~~~~~~Yp~~G~~np~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~~~~~W~~d~~~~~~~~nR~q~~~~i~~~d~~t  289 (465)
T d1xfda1         210 YPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATT  289 (465)
T ss_dssp             SCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTT
T ss_pred             cceeeeeeccccCCCCCceeEEEEecCCCcEEEEEeccCcCccccceeeeeEEcCCCeEEEEEEccccccceEEEEcCCC
Confidence                                 3333333222111100      0112456778888876655332     2578899988


Q ss_pred             CceeeEeccCCC-C----eEEEEECCCCCEEEE--EE-CCC--eEEEEeCC------CCeeeEeeccccccEEEEEECCC
Q psy12697        394 DKPVKSFEGHTN-E----VNAIKWDPQGLLLAS--CS-DDM--TLKIWSLD------KDNCVHDLQAHNKEIYTIKWSPT  457 (602)
Q Consensus       394 ~~~~~~~~~~~~-~----i~~~~~~~~~~~l~~--~~-~dg--~i~iwd~~------~~~~~~~~~~~~~~i~~~~~~~~  457 (602)
                      ++....+..... .    -....|+|+|+.++.  .+ .+|  .+...++.      .+..+..+.              
T Consensus       290 g~~~~~~~e~~~~wv~~~~~~p~~~~dg~~~~fi~~se~~g~~~ly~~~~~~~~~~~~~~~~~~LT--------------  355 (465)
T d1xfda1         290 GVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSIT--------------  355 (465)
T ss_dssp             CCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSC--------------
T ss_pred             CcEEEEEEEcCCceEeccCCceeEccCCCeeEEEEeeeecccCceEEEEeccccccCCCceeEEec--------------
Confidence            876555443222 1    134578888875432  22 222  22222211      111111111              


Q ss_pred             CCCCCCCCcceeeeeeeccCCccCCeEEE-EEccCCCEEE-EEeCC----CeEEEEeCCCCceeeeec---ccCCCeeEe
Q psy12697        458 GPETSNPNMSLIFILKSTLGQHKGPIFAL-KWNKRGNYIL-SAGVD----KTTIIWDAASGQCEQQFS---FHSAPALDV  528 (602)
Q Consensus       458 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~i-~~s~~~~~l~-s~~~d----g~i~iwd~~~~~~~~~~~---~~~~~v~~~  528 (602)
                                          ...-.|..+ .|+++++.+. ++..+    ..|+--++..+.....+.   .......++
T Consensus       356 --------------------~G~w~V~~i~~~d~~~~~vyF~a~~~~p~~~hly~v~l~g~~~~~~lt~~~~~~~~~~~~  415 (465)
T d1xfda1         356 --------------------SGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSA  415 (465)
T ss_dssp             --------------------CSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEE
T ss_pred             --------------------cCCceEEEEEEEcCCCCEEEEEEeCCCCCceEEEEEECCCCCcceeeccccCCCCCEEEE
Confidence                                122233333 4666666554 33332    224444444333222222   234457789


Q ss_pred             eecCCc-eEE-EeeC--CCcEEEeecCCCCceeeeec
Q psy12697        529 DWQSNT-SFA-SCST--DQHIHVCKLHSDKPVKSFEG  561 (602)
Q Consensus       529 ~~s~~~-~l~-~~~~--d~~i~iw~~~~~~~~~~~~~  561 (602)
                      .|||++ +++ +++.  --.+.+++..+++.+..++.
T Consensus       416 ~~S~~~~y~v~~~s~~~~P~~~~~~~~~~~~~~~Le~  452 (465)
T d1xfda1         416 SFSHSMDFFLLKCEGPGVPMVTVHNTTDKKKMFDLET  452 (465)
T ss_dssp             EECTTSSEEEEECCSSSSCCEEEEETTTCCEEEEEEC
T ss_pred             EECCCCCEEEEEeecCCCCeEEEEECCCCCEEEEEcC
Confidence            999999 554 3332  24578888777777776653

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.16  E-value=3e-08  Score=89.01  Aligned_cols=241  Identities=12%  Similarity=0.137  Sum_probs=160.6

Q ss_pred             ceEEEEECCCCCeEEEeeCCceEEEEecCCceeEEEeeccCceEEEEeCCCCCCCCCCCCccccccccccCCcceEeeCC
Q psy12697        142 PVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKGTGGIFEVCWNSRGTPPNPPESMEVDASIEIPQSKATKLIGH  221 (602)
Q Consensus       142 ~V~~~~~s~d~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h  221 (602)
                      ....++++++|+++++-..++.|++||.+ |+.+..+......                                  .+.
T Consensus        24 ~P~gvavd~dg~i~VaD~~n~rI~v~d~~-G~~~~~~~~~~~~----------------------------------~~~   68 (279)
T d1q7fa_          24 EPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKR----------------------------------DSQ   68 (279)
T ss_dssp             CEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSS----------------------------------TTC
T ss_pred             CccEEEEcCCCCEEEEECCCCEEEEEeCC-CCEEEEecccCCC----------------------------------ccc
Confidence            46789999999988887788999999964 6766655321100                                  001


Q ss_pred             CcceEEEEEcCCC-CEEEE-eeCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEeeCCCCCeEEEEe
Q psy12697        222 ESEVFICAWNPVK-DFLAS-GSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFLATGS  299 (602)
Q Consensus       222 ~~~v~~~~~~~~~-~~l~s-~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  299 (602)
                      ......+++.++. ..+++ .+.++.|..++......          . .+     ..........+++.++|.++++..
T Consensus        69 ~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~----------~-~~-----~~~~~~~p~~~avd~~G~i~v~~~  132 (279)
T d1q7fa_          69 LLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQYGQFV----------R-KF-----GATILQHPRGVTVDNKGRIIVVEC  132 (279)
T ss_dssp             BSSEEEEEEETTTTEEEEEECGGGCEEEEECTTSCEE----------E-EE-----CTTTCSCEEEEEECTTSCEEEEET
T ss_pred             ccccccccccccccccceeccCCccccccccccccce----------e-ec-----CCCcccccceeccccCCcEEEEee
Confidence            1123334444443 33332 23445566665432110          0 00     011234567899999999888888


Q ss_pred             CCCeEEEEcCCCcceeec--ccccCCeEEEEEccCCCEEEEEecCCcEEEEeCCCCceeEEeee--ccCCeeeeeccCCC
Q psy12697        300 YDGYARIWTSDGSLKSTL--GQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSF--HSAPALDVDWQSNT  375 (602)
Q Consensus       300 ~dg~i~i~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~--~~~~~~~~~~~~~~  375 (602)
                      ..+.+.+++.++.....+  ..+......+++.++++.+++....+.|.+||.. ++.+..+..  .......+++.+++
T Consensus       133 ~~~~~~~~~~~g~~~~~~g~~~~~~~~~~i~~d~~g~i~v~d~~~~~V~~~d~~-G~~~~~~g~~g~~~~P~giavD~~G  211 (279)
T d1q7fa_         133 KVMRVIIFDQNGNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNG  211 (279)
T ss_dssp             TTTEEEEECTTSCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTC
T ss_pred             ccceeeEeccCCceeecccccccccccceeeeccceeEEeeeccccceeeeecC-CceeeeecccccccCCcccccccCC
Confidence            888999999988877664  3456678899999999988888888999999964 566665532  33456778888887


Q ss_pred             eEEEeeC--CCeEEEEEcCCCceeeEeccC--CCCeEEEEECCCCCEEEEEECCCeEEEEeCCCC
Q psy12697        376 SFASCST--DQHIHVCKLHSDKPVKSFEGH--TNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKD  436 (602)
Q Consensus       376 ~~~~~~~--~~~i~i~d~~~~~~~~~~~~~--~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~  436 (602)
                      .++++..  ++.|.+++. +++.+..+...  ......+++.|+|.++ +++.++.|++|.....
T Consensus       212 ~i~Vad~~~~~~v~~f~~-~G~~~~~~~~~~~~~~p~~vav~~dG~l~-V~~~n~~v~~fr~~~~  274 (279)
T d1q7fa_         212 EILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQCFDVALMDDGSVV-LASKDYRLYIYRYVQL  274 (279)
T ss_dssp             CEEEEECSSSCEEEEECT-TSCEEEEEEESSCCSCEEEEEEETTTEEE-EEETTTEEEEEECSCC
T ss_pred             eEEEEECCCCcEEEEECC-CCCEEEEEeCCCCCCCEeEEEEeCCCcEE-EEeCCCeEEEEEeeee
Confidence            7666643  456888884 56766665433  3468899999999754 5568899999998754

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.14  E-value=1.1e-07  Score=84.78  Aligned_cols=231  Identities=13%  Similarity=0.122  Sum_probs=138.7

Q ss_pred             eEEEEcCCCcceeecccccCCeEEEEEccCCCEEEEEecCC---cEEEEeCCCCceeEEeeeccCCeeeeeccCCCeEEE
Q psy12697        303 YARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDK---TTIIWDAASGQCEQQFSFHSAPALDVDWQSNTSFAS  379 (602)
Q Consensus       303 ~i~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg---~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  379 (602)
                      .|.+.|.+|.....+..+...+...+|||||+.|+......   .+.+.+...+.. ..+..+........|+|++..++
T Consensus        20 ~l~i~d~dG~~~~~l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~spdg~~i~   98 (269)
T d2hqsa1          20 ELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAV-RQVASFPRHNGAPAFSPDGSKLA   98 (269)
T ss_dssp             EEEEEETTSCSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EEEECCSSCEEEEEECTTSSEEE
T ss_pred             EEEEEcCCCCCcEEEecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCce-eEEeeeecccccceecCCCCeee
Confidence            57788888888878877888899999999999998765433   466667665554 34445566777888999876333


Q ss_pred             e--eCCCe--EEEEEcCCCceeeEeccCCCCeEEEEECCCCCEEEEEE-CCCe--EEEEeCCCCeeeEeeccccccEEEE
Q psy12697        380 C--STDQH--IHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCS-DDMT--LKIWSLDKDNCVHDLQAHNKEIYTI  452 (602)
Q Consensus       380 ~--~~~~~--i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~--i~iwd~~~~~~~~~~~~~~~~i~~~  452 (602)
                      .  ...+.  +..+........ .............+++++..++..+ .+|.  |.+.++..+... .+..        
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~-~~~~--------  168 (269)
T d2hqsa1          99 FALSKTGSLNLYVMDLASGQIR-QVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQ-RITW--------  168 (269)
T ss_dssp             EEECTTSSCEEEEEETTTCCEE-ECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCE-ECCC--------
T ss_pred             EeeecCCccceeecccccccce-eeeeccccccccccccccccceecccccCCceEeeeecccccce-eeec--------
Confidence            2  22333  333333333322 2223334445566777776655544 3443  455555443221 1111        


Q ss_pred             EECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCCC---eEEEEeCCCCceeeeecccCCCeeEee
Q psy12697        453 KWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDK---TTIIWDAASGQCEQQFSFHSAPALDVD  529 (602)
Q Consensus       453 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg---~i~iwd~~~~~~~~~~~~~~~~v~~~~  529 (602)
                                                .........|+|+++.++..+.++   .+.+.|...+..  ....+........
T Consensus       169 --------------------------~~~~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~~p~  220 (269)
T d2hqsa1         169 --------------------------EGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV--QVLSSTFLDETPS  220 (269)
T ss_dssp             --------------------------SSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCE--EECCCSSSCEEEE
T ss_pred             --------------------------ccccccccccccccceeEEEeecCCceeeeEeecccccc--eEeecCccccceE
Confidence                                      233445567788888888765543   455555554443  3333556677889


Q ss_pred             ecCCc-eEEEeeC---CCcEEEeecCCCCceeeeecccccceEEEEecCCcEEEEEECC
Q psy12697        530 WQSNT-SFASCST---DQHIHVCKLHSDKPVKSFEGHTTGQLVHSYKGTGGIFEVCWNS  584 (602)
Q Consensus       530 ~s~~~-~l~~~~~---d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp  584 (602)
                      ||||| .|+..+.   ...|+++++..+.... +..           ..+.+...+|||
T Consensus       221 ~SPDG~~i~f~s~~~~~~~l~~~~~dg~~~~~-lt~-----------~~g~~~~p~WSP  267 (269)
T d2hqsa1         221 LAPNGTMVIYSSSQGMGSVLNLVSTDGRFKAR-LPA-----------TDGQVKFPAWSP  267 (269)
T ss_dssp             ECTTSSEEEEEEEETTEEEEEEEETTSCCEEE-CCC-----------SSSEEEEEEECC
T ss_pred             ECCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-EeC-----------CCCcEEeEEeCC
Confidence            99999 6665443   3467888886654332 221           135678899998

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.14  E-value=5.4e-08  Score=91.00  Aligned_cols=246  Identities=12%  Similarity=0.028  Sum_probs=137.8

Q ss_pred             ccCCeEEEEEccCCCEEEEEecCCcEEEEeCCCC-ceeEEe-eeccCCeeeeeccCCCe--EEEee--CCCeEEEEEcCC
Q psy12697        320 HKGPIFALKWNKRGNYILSAGVDKTTIIWDAASG-QCEQQF-SFHSAPALDVDWQSNTS--FASCS--TDQHIHVCKLHS  393 (602)
Q Consensus       320 ~~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~~-~~~~~~-~~~~~~~~~~~~~~~~~--~~~~~--~~~~i~i~d~~~  393 (602)
                      ....+..|+|+|++++|.++.. +.+..|.+... ...... .........+.+++++.  +++..  ..+.+..+.+..
T Consensus        38 ~~~~~s~la~s~d~~~ly~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~p~~v~~~~~~~~~~v~~a~~~~~~v~~~~~~~  116 (365)
T d1jofa_          38 QDEPISWMTFDHERKNIYGAAM-KKWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYK  116 (365)
T ss_dssp             TTCCCSEEEECTTSSEEEEEEB-TEEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESS
T ss_pred             CCCCCCEEEEcCCCCEEEEEeC-CcEEEEEEeCCCCeEEEeeecCCCCcEEEEECCCCCEEEEEEecCCCCEEEEeEccC
Confidence            3445667999999999988765 46777765532 222221 22233456677777765  33332  235555544322


Q ss_pred             C-------------ce---eeEe-ccCCCCeEEEEECCCCCEEEEEEC-CCeEEEEeCCCCeeeEeeccccccEEEEEEC
Q psy12697        394 D-------------KP---VKSF-EGHTNEVNAIKWDPQGLLLASCSD-DMTLKIWSLDKDNCVHDLQAHNKEIYTIKWS  455 (602)
Q Consensus       394 ~-------------~~---~~~~-~~~~~~i~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~  455 (602)
                      .             +.   .... .....-+.++.|+|+|+++++++. ...|.+|+......+....       .+.  
T Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~-------~~~--  187 (365)
T d1jofa_         117 FAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVG-------SVD--  187 (365)
T ss_dssp             SCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEE-------EEE--
T ss_pred             CCCcceeEeeeecceecCcccCcccCCCCcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeecc-------cee--
Confidence            1             10   1000 112224789999999999888865 3578888765432211110       000  


Q ss_pred             CCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEe-CCCeEEEEeCCCCceeeeec---------------
Q psy12697        456 PTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAG-VDKTTIIWDAASGQCEQQFS---------------  519 (602)
Q Consensus       456 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~---------------  519 (602)
                                          ..........++|+|+++++.+.. .+++|.+|++..+.......               
T Consensus       188 --------------------~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (365)
T d1jofa_         188 --------------------APDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRD  247 (365)
T ss_dssp             --------------------CSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBC
T ss_pred             --------------------ecCCCCceEEEEECCCCceEEEeccCCCEEEEEEecCCCceEEEEeeeeccccccccccc
Confidence                                011234567889999999886554 57899999987654322111               


Q ss_pred             ----ccCCCeeEeeecCCc-eEEEee-CCC-----cEEEeecCCCCceeeeecccccceEEEEecCCcEEEEEECC-CCC
Q psy12697        520 ----FHSAPALDVDWQSNT-SFASCS-TDQ-----HIHVCKLHSDKPVKSFEGHTTGQLVHSYKGTGGIFEVCWNS-RGD  587 (602)
Q Consensus       520 ----~~~~~v~~~~~s~~~-~l~~~~-~d~-----~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp-dg~  587 (602)
                          .+......+.++||| +|+++. .+.     .|..|++.....+......     ............++++| +|+
T Consensus       248 ~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~-----~~~~~~G~~p~~i~~~p~~G~  322 (365)
T d1jofa_         248 PETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFL-----SPTPTSGGHSNAVSPCPWSDE  322 (365)
T ss_dssp             TTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEE-----EECSSCCTTCCCEEECTTCTT
T ss_pred             cccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCceeeEeEe-----eEEEcCCCCccEEEecCCCCC
Confidence                111235578999999 665553 222     3777776543322211100     00001123457799998 899


Q ss_pred             eEEEec-cCCeEEe
Q psy12697        588 KVGASA-SDGSVFK  600 (602)
Q Consensus       588 ~l~~~~-~dg~v~i  600 (602)
                      +|+++. .++.|.|
T Consensus       323 ~l~va~~~s~~v~v  336 (365)
T d1jofa_         323 WMAITDDQEGWLEI  336 (365)
T ss_dssp             EEEEECSSSCEEEE
T ss_pred             EEEEEeCCCCeEEE
Confidence            887775 4566665

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.08  E-value=1.8e-07  Score=90.20  Aligned_cols=344  Identities=13%  Similarity=0.119  Sum_probs=183.4

Q ss_pred             ccceeeeecccceeeeeeecc---CCceEEEEECCCCCeEEEee---------CCceEEEEecCCceeEEEeec---cCc
Q psy12697        119 RLTLPLWDVERGECLNTLTRH---TEPVYSVAFSPDGKFLASGS---------FDKCVHIWSARTGQLVHSYKG---TGG  183 (602)
Q Consensus       119 ~~~i~vwd~~~~~~~~~l~~h---~~~V~~~~~s~d~~~l~s~~---------~d~~v~iwd~~~~~~~~~~~~---~~~  183 (602)
                      ++.|.+||+.+++....+..+   .-.+....||||+++++...         ..+.+.++|+.++........   ...
T Consensus        36 ~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~~l~~~~~~~~~  115 (465)
T d1xfda1          36 KGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAK  115 (465)
T ss_dssp             SSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCC
T ss_pred             CCcEEEEECCCCCEEEEEcCccccccccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccCCceeeccCccCCccc
Confidence            457999999988765444443   34677889999999887763         357899999999876543322   233


Q ss_pred             eEEEEeCCCCCCCCCCCCccccccccccCCcceEe----------eCCCc---------ceEEEEEcCCCCEEEEeeC-C
Q psy12697        184 IFEVCWNSRGTPPNPPESMEVDASIEIPQSKATKL----------IGHES---------EVFICAWNPVKDFLASGSG-D  243 (602)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l----------~~h~~---------~v~~~~~~~~~~~l~s~~~-d  243 (602)
                      +....|+|+|+.++......... ..........+          .|...         .-..+.|||||++||.... +
T Consensus       116 l~~~~wSPDG~~iafv~~~nl~~-~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~iaf~~~D~  194 (465)
T d1xfda1         116 LQYAGWGPKGQQLIFIFENNIYY-CAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAIND  194 (465)
T ss_dssp             CSBCCBCSSTTCEEEEETTEEEE-ESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEEC
T ss_pred             cceeeeccCCceEEEEecceEEE-EecCCCceEEEecccCcceeeccccchhhhhhhccccceEEECCCCCeEEEEEecc
Confidence            45688999998876544332211 11111111111          11111         1246789999999998764 4


Q ss_pred             CcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEeeCCCCCeEEEEeCCCeEEEEcCCCcceee-------
Q psy12697        244 STARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFLATGSYDGYARIWTSDGSLKST-------  316 (602)
Q Consensus       244 g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~-------  316 (602)
                      ..+..+.+........                     ..+..+.+..-|..-    ....+.++|+++.....       
T Consensus       195 s~V~~~~~~~~~~~~~---------------------p~~~~~~Yp~~G~~n----p~~~l~v~d~~~~~~~~~~~~~~~  249 (465)
T d1xfda1         195 SRVPIMELPTYTGSIY---------------------PTVKPYHYPKAGSEN----PSISLHVIGLNGPTHDLEMMPPDD  249 (465)
T ss_dssp             TTSCEEEECCCSSSSS---------------------CCCEEEECCBTTSCC----CEEEEEEEESSSSCCCEECCCCCC
T ss_pred             cccceeeccccccccc---------------------ceeeeeeccccCCCC----CceeEEEEecCCCcEEEEEeccCc
Confidence            5566665543211100                     011112211111100    01235566665332211       


Q ss_pred             cccccCCeEEEEEccCCCEEEEEec-C---CcEEEEeCCCCceeEEeeeccC-C----eeeeeccCCCe---EEEee-CC
Q psy12697        317 LGQHKGPIFALKWNKRGNYILSAGV-D---KTTIIWDAASGQCEQQFSFHSA-P----ALDVDWQSNTS---FASCS-TD  383 (602)
Q Consensus       317 ~~~~~~~i~~~~~~~~~~~l~~~~~-d---g~i~~wd~~~~~~~~~~~~~~~-~----~~~~~~~~~~~---~~~~~-~~  383 (602)
                      .......+..+.|+++++.++.... +   ..+.++|..++++...+..... .    -....|++++.   ++..+ .+
T Consensus       250 ~~~~~~y~~~~~W~~d~~~~~~~~nR~q~~~~i~~~d~~tg~~~~~~~e~~~~wv~~~~~~p~~~~dg~~~~fi~~se~~  329 (465)
T d1xfda1         250 PRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQG  329 (465)
T ss_dssp             GGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCS
T ss_pred             CccccceeeeeEEcCCCeEEEEEEccccccceEEEEcCCCCcEEEEEEEcCCceEeccCCceeEccCCCeeEEEEeeeec
Confidence            1112234778999999886655432 2   2578899999987665543322 1    12345667654   33222 22


Q ss_pred             --CeEEEEEcC------CCceeeEeccCCCCeEEE-EECCCCCEEEE-EECC--CeEEEEeC--CCCeeeEeeccccccE
Q psy12697        384 --QHIHVCKLH------SDKPVKSFEGHTNEVNAI-KWDPQGLLLAS-CSDD--MTLKIWSL--DKDNCVHDLQAHNKEI  449 (602)
Q Consensus       384 --~~i~i~d~~------~~~~~~~~~~~~~~i~~~-~~~~~~~~l~~-~~~d--g~i~iwd~--~~~~~~~~~~~~~~~i  449 (602)
                        +.++.+++.      .++.+..+....-.|..+ .|+++++.+.- +..+  +.-.+|.+  ........+.      
T Consensus       330 g~~~ly~~~~~~~~~~~~~~~~~~LT~G~w~V~~i~~~d~~~~~vyF~a~~~~p~~~hly~v~l~g~~~~~~lt------  403 (465)
T d1xfda1         330 GRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLS------  403 (465)
T ss_dssp             SSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSS------
T ss_pred             ccCceEEEEeccccccCCCceeEEeccCCceEEEEEEEcCCCCEEEEEEeCCCCCceEEEEEECCCCCcceeec------
Confidence              344444332      233334444334456554 58887766643 3322  12223322  2111111110      


Q ss_pred             EEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCC---CeEEEEeCCCCceeeeec
Q psy12697        450 YTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVD---KTTIIWDAASGQCEQQFS  519 (602)
Q Consensus       450 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~  519 (602)
                                               ...........+.|||++++++.....   -.+.+++..+++.+..+.
T Consensus       404 -------------------------~~~~~~~~~~~~~~S~~~~y~v~~~s~~~~P~~~~~~~~~~~~~~~Le  451 (465)
T d1xfda1         404 -------------------------CDLVENCTYFSASFSHSMDFFLLKCEGPGVPMVTVHNTTDKKKMFDLE  451 (465)
T ss_dssp             -------------------------TTSSSSCCCCEEEECTTSSEEEEECCSSSSCCEEEEETTTCCEEEEEE
T ss_pred             -------------------------cccCCCCCEEEEEECCCCCEEEEEeecCCCCeEEEEECCCCCEEEEEc
Confidence                                     001123456688899999998854433   468888888888887775

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=99.07  E-value=1.7e-07  Score=85.36  Aligned_cols=248  Identities=9%  Similarity=0.058  Sum_probs=152.5

Q ss_pred             eEeeCCCcceEEEEEcCCCCEEEEeeC-------CCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEee
Q psy12697        216 TKLIGHESEVFICAWNPVKDFLASGSG-------DSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDW  288 (602)
Q Consensus       216 ~~l~~h~~~v~~~~~~~~~~~l~s~~~-------dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  288 (602)
                      ..+...-.....++|.|+|++.++...       ++.|..||..++........            ...........++|
T Consensus        11 ~~v~~~~~g~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~------------~~~~~~g~P~Gl~~   78 (314)
T d1pjxa_          11 TKVTEDIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKP------------EVNGYGGIPAGCQC   78 (314)
T ss_dssp             EEEECCCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECC------------EETTEECCEEEEEE
T ss_pred             EEeecCCCCCeEeEEeCCCCEEEEECccccccccCCEEEEEECCCCcEEEEECC------------ccccCCCcceeEEE
Confidence            334444445677899999987776433       46688888776542110000            00001123578999


Q ss_pred             CCCCCeEEEEeCCCeEEEEcCCCcceeeccccc-----CCeEEEEEccCCCEEEEEec---------------CCcEEEE
Q psy12697        289 NNNGSFLATGSYDGYARIWTSDGSLKSTLGQHK-----GPIFALKWNKRGNYILSAGV---------------DKTTIIW  348 (602)
Q Consensus       289 ~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~-----~~i~~~~~~~~~~~l~~~~~---------------dg~i~~w  348 (602)
                      .++++.++++...+.+..++.++..........     ...+.+.+.++|+..++-..               .|.|..+
T Consensus        79 ~~dg~~l~vad~~~~i~~~~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~  158 (314)
T d1pjxa_          79 DRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCF  158 (314)
T ss_dssp             CSSSSEEEEEETTTEEEEEETTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEE
T ss_pred             eCCCCEEEEEECCCeEEEEeCCCcEEEEEeccccccccCCCcEEEECCCCCEEEecCccCcccccccceeccCCceEEEE
Confidence            999998888887778888888876554432211     13578999999987776432               2344444


Q ss_pred             eCCCCceeEEeeeccCCeeeeeccCCC------eEEEeeCCCeEEEEEcCCCceee------Eecc-CCCCeEEEEECCC
Q psy12697        349 DAASGQCEQQFSFHSAPALDVDWQSNT------SFASCSTDQHIHVCKLHSDKPVK------SFEG-HTNEVNAIKWDPQ  415 (602)
Q Consensus       349 d~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~i~i~d~~~~~~~~------~~~~-~~~~i~~~~~~~~  415 (602)
                      +.. ++..... ..-.....++|++++      .+++-+..+.|..|++.....+.      .+.+ +......++++++
T Consensus       159 ~~d-g~~~~~~-~~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~  236 (314)
T d1pjxa_         159 TTD-GQMIQVD-TAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDED  236 (314)
T ss_dssp             CTT-SCEEEEE-EEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTT
T ss_pred             eec-CceeEee-CCcceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEecC
Confidence            432 3332222 222334566776653      34455677889998876443222      2222 2234668999999


Q ss_pred             CCEEEEEECCCeEEEEeCCCCeeeEeeccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCC-E
Q psy12697        416 GLLLASCSDDMTLKIWSLDKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGN-Y  494 (602)
Q Consensus       416 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~-~  494 (602)
                      |++.++....+.|.+||.+.++....+..+..                                  ..++++|.||++ +
T Consensus       237 GnlyVa~~~~g~I~~~dp~~g~~~~~i~~p~~----------------------------------~~t~~afg~d~~~l  282 (314)
T d1pjxa_         237 NNLLVANWGSSHIEVFGPDGGQPKMRIRCPFE----------------------------------KPSNLHFKPQTKTI  282 (314)
T ss_dssp             CCEEEEEETTTEEEEECTTCBSCSEEEECSSS----------------------------------CEEEEEECTTSSEE
T ss_pred             CcEEEEEcCCCEEEEEeCCCCEEEEEEECCCC----------------------------------CEEEEEEeCCCCEE
Confidence            99988888889999999887765555443322                                  345666667776 5


Q ss_pred             EEEEeCCCeEEEEeCCC
Q psy12697        495 ILSAGVDKTTIIWDAAS  511 (602)
Q Consensus       495 l~s~~~dg~i~iwd~~~  511 (602)
                      +++.+.+|.|...++..
T Consensus       283 yVt~~~~g~i~~~~~~~  299 (314)
T d1pjxa_         283 FVTEHENNAVWKFEWQR  299 (314)
T ss_dssp             EEEETTTTEEEEEECSS
T ss_pred             EEEECCCCcEEEEECCC
Confidence            56667788888888653

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.00  E-value=1.3e-06  Score=79.68  Aligned_cols=222  Identities=10%  Similarity=0.122  Sum_probs=133.9

Q ss_pred             eeccCCceEEEEECCCCCeEEEeeCCceEEEEecCCceeEEEeeccCceEEEEeCCCCCCCCCCCCccccccccccCCcc
Q psy12697        136 LTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKGTGGIFEVCWNSRGTPPNPPESMEVDASIEIPQSKA  215 (602)
Q Consensus       136 l~~h~~~V~~~~~s~d~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  215 (602)
                      +......+..++|.++|++.++-...+.|..|+.++++....+                                     
T Consensus        35 ~~~~~~~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~-------------------------------------   77 (319)
T d2dg1a1          35 ISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPF-------------------------------------   77 (319)
T ss_dssp             EESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEE-------------------------------------
T ss_pred             eccCCcCcEeCEECCCCCEEEEECCCCEEEEEECCCCeEEEEE-------------------------------------
Confidence            3334445678999999997777778899998988776544321                                     


Q ss_pred             eEeeCCCcceEEEEEcCCCCEEEEeeCC--CcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEeeCCCCC
Q psy12697        216 TKLIGHESEVFICAWNPVKDFLASGSGD--STARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGS  293 (602)
Q Consensus       216 ~~l~~h~~~v~~~~~~~~~~~l~s~~~d--g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  293 (602)
                         .........+++.++|+++++...+  ....++.+.......    .....        ..........+++.++|+
T Consensus        78 ---~~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~~~----~~~~~--------~~~~~~~~nd~~~d~~G~  142 (319)
T d2dg1a1          78 ---VSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNL----QDIIE--------DLSTAYCIDDMVFDSKGG  142 (319)
T ss_dssp             ---ECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSC----EEEEC--------SSSSCCCEEEEEECTTSC
T ss_pred             ---eCCCCCeeEEEECCCCCEEEEecCCCccceeEEEEcCCCcee----eeecc--------CCCcccCCcceeEEeccc
Confidence               2234456789999999877765432  233344333222110    00000        011124577899999998


Q ss_pred             eEEEEeC------CCeEEEEcCCCcceeecccccCCeEEEEEccCCCEEEEE-ecCCcEEEEeCCCCc-eeEEeeeccCC
Q psy12697        294 FLATGSY------DGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSA-GVDKTTIIWDAASGQ-CEQQFSFHSAP  365 (602)
Q Consensus       294 ~l~~~~~------dg~i~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~~wd~~~~~-~~~~~~~~~~~  365 (602)
                      +.++...      .+.+..++.++.....+...-...+.++|+|+++.|+.+ +..+.|..|++.... ......     
T Consensus       143 l~vtd~~~~~~~~~g~v~~~~~dg~~~~~~~~~~~~pnGia~s~dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~-----  217 (319)
T d2dg1a1         143 FYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFG-----  217 (319)
T ss_dssp             EEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEE-----
T ss_pred             eeecccccccccCcceeEEEecccceeEEEeeccceeeeeeeccccceEEEecccCCceEEEEEcCCCceecccc-----
Confidence            6665432      234666676665555444444556789999999866544 456778777764321 111000     


Q ss_pred             eeeeeccCCCeEEEeeCCCeEEEEEcCCCceeeEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeeeEeecc
Q psy12697        366 ALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHDLQA  444 (602)
Q Consensus       366 ~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~  444 (602)
                                                   ...............++++++|++.++....+.|.+||. .++.+.++..
T Consensus       218 -----------------------------~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p-~G~~l~~i~~  266 (319)
T d2dg1a1         218 -----------------------------ATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILI  266 (319)
T ss_dssp             -----------------------------EEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEEC
T ss_pred             -----------------------------ceeeeccCCccceeeeeEcCCCCEEEEEcCCCEEEEECC-CCcEEEEEeC
Confidence                                         000001111123567999999999888889999999995 6777766543

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.91  E-value=2.9e-06  Score=77.21  Aligned_cols=233  Identities=9%  Similarity=0.049  Sum_probs=143.8

Q ss_pred             CCeEEEEEccCCCEEEEEecCCcEEEEeCCCCceeEEeeeccCCeeeeeccCCCeEEEeeC-----CCeEEEEEcCCCce
Q psy12697        322 GPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTSFASCST-----DQHIHVCKLHSDKP  396 (602)
Q Consensus       322 ~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~i~i~d~~~~~~  396 (602)
                      ..+..++|.++|+..++-...+.|..|+...++..............+++.+++.++++..     .+.+...+......
T Consensus        40 ~~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~~~  119 (319)
T d2dg1a1          40 LQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNL  119 (319)
T ss_dssp             CCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSC
T ss_pred             cCcEeCEECCCCCEEEEECCCCEEEEEECCCCeEEEEEeCCCCCeeEEEECCCCCEEEEecCCCccceeEEEEcCCCcee
Confidence            3456899999999777777889999999887776666555566678899999888776643     23455556555544


Q ss_pred             eeEecc--CCCCeEEEEECCCCCEEEEEECC------CeEEEEeCCCCeeeEeeccccccEEEEEECCCCCCCCCCCcce
Q psy12697        397 VKSFEG--HTNEVNAIKWDPQGLLLASCSDD------MTLKIWSLDKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSL  468 (602)
Q Consensus       397 ~~~~~~--~~~~i~~~~~~~~~~~l~~~~~d------g~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~  468 (602)
                      ......  .......++++++|++.++....      +.+..++...+ .+..+.                         
T Consensus       120 ~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~-~~~~~~-------------------------  173 (319)
T d2dg1a1         120 QDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFR-TVTPII-------------------------  173 (319)
T ss_dssp             EEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSC-CEEEEE-------------------------
T ss_pred             eeeccCCCcccCCcceeEEeccceeecccccccccCcceeEEEecccc-eeEEEe-------------------------
Confidence            333322  12357789999999866654321      12333322211 111100                         


Q ss_pred             eeeeeeccCCccCCeEEEEEccCCCEEE-EEeCCCeEEEEeCCCC-ceeeee-------cccCCCeeEeeecCCc-eEEE
Q psy12697        469 IFILKSTLGQHKGPIFALKWNKRGNYIL-SAGVDKTTIIWDAASG-QCEQQF-------SFHSAPALDVDWQSNT-SFAS  538 (602)
Q Consensus       469 ~~~~~~~~~~~~~~v~~i~~s~~~~~l~-s~~~dg~i~iwd~~~~-~~~~~~-------~~~~~~v~~~~~s~~~-~l~~  538 (602)
                               ..-...+.++|+||++.|. +-+..+.|..||+... ......       .........+++.++| .+++
T Consensus       174 ---------~~~~~pnGia~s~dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va  244 (319)
T d2dg1a1         174 ---------QNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVA  244 (319)
T ss_dssp             ---------EEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEE
T ss_pred             ---------eccceeeeeeeccccceEEEecccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEE
Confidence                     0112346789999998664 4456789999987532 221111       1111234679999999 6777


Q ss_pred             eeCCCcEEEeecCCCCceeeeecccccceEEEEecCCcEEEEEECCCCCeEEEeccC
Q psy12697        539 CSTDQHIHVCKLHSDKPVKSFEGHTTGQLVHSYKGTGGIFEVCWNSRGDKVGASASD  595 (602)
Q Consensus       539 ~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~d  595 (602)
                      ....+.|.+|+- .++.+..+.......     .....+++++|.|++..|++...+
T Consensus       245 ~~~~g~V~~~~p-~G~~l~~i~~P~~~~-----~~~~~~~~~~~~~~~~~~~~t~~~  295 (319)
T d2dg1a1         245 MYGQGRVLVFNK-RGYPIGQILIPGRDE-----GHMLRSTHPQFIPGTNQLIICSND  295 (319)
T ss_dssp             EETTTEEEEECT-TSCEEEEEECTTGGG-----TCSCBCCEEEECTTSCEEEEEEEC
T ss_pred             EcCCCEEEEECC-CCcEEEEEeCCCcCC-----CcCceeeeEEEeCCCCEEEEEcCC
Confidence            778899999994 566665554321100     001246799999998888776543

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.67  E-value=3.8e-05  Score=68.56  Aligned_cols=218  Identities=7%  Similarity=-0.050  Sum_probs=135.5

Q ss_pred             EEEEccCCCEEEEE-ecCCcEEEEeCCCCceeEEeeeccCCeeeeeccCCCeEEEeeCCCeEEEEEcCCCceeeEecc--
Q psy12697        326 ALKWNKRGNYILSA-GVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEG--  402 (602)
Q Consensus       326 ~~~~~~~~~~l~~~-~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~--  402 (602)
                      ...|++....|.-. -..+.|..||..+++.. .+. ....+.++.+.+++.+++++.+ .+..+|..+++.......  
T Consensus        22 gp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~-~~~-~~~~~~~i~~~~dg~l~va~~~-gl~~~d~~tg~~~~l~~~~~   98 (295)
T d2ghsa1          22 GPTFDPASGTAWWFNILERELHELHLASGRKT-VHA-LPFMGSALAKISDSKQLIASDD-GLFLRDTATGVLTLHAELES   98 (295)
T ss_dssp             EEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEE-CSSCEEEEEEEETTEEEEEETT-EEEEEETTTCCEEEEECSST
T ss_pred             CCeEECCCCEEEEEECCCCEEEEEECCCCeEE-EEE-CCCCcEEEEEecCCCEEEEEeC-ccEEeecccceeeEEeeeec
Confidence            45677655544443 35678999998887643 222 2345678888888888888765 588999998875433221  


Q ss_pred             --CCCCeEEEEECCCCCEEEEEECC----CeEEEEeCCCCeeeEeeccccccEEEEEECCCCCCCCCCCcceeeeeeecc
Q psy12697        403 --HTNEVNAIKWDPQGLLLASCSDD----MTLKIWSLDKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTL  476 (602)
Q Consensus       403 --~~~~i~~~~~~~~~~~l~~~~~d----g~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  476 (602)
                        ....++.+.++|+|++.++...+    +.-.+|.+..++......                                 
T Consensus        99 ~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~---------------------------------  145 (295)
T d2ghsa1          99 DLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLFA---------------------------------  145 (295)
T ss_dssp             TCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEEE---------------------------------
T ss_pred             CCCcccceeeEECCCCCEEEEeccccccccceeEeeecCCcEEEEee---------------------------------
Confidence              12358889999999877765432    223444444443222111                                 


Q ss_pred             CCccCCeEEEEEccCCCEEE-EEeCCCeEEEEeCCCC--c----e--eeeecccCCCeeEeeecCCc-eEEEeeCCCcEE
Q psy12697        477 GQHKGPIFALKWNKRGNYIL-SAGVDKTTIIWDAASG--Q----C--EQQFSFHSAPALDVDWQSNT-SFASCSTDQHIH  546 (602)
Q Consensus       477 ~~~~~~v~~i~~s~~~~~l~-s~~~dg~i~iwd~~~~--~----~--~~~~~~~~~~v~~~~~s~~~-~l~~~~~d~~i~  546 (602)
                        .-..-+.++|+++++.+. +-+..+.|..+++...  .    .  ...+....+....+++..+| ..++.-..+.|.
T Consensus       146 --~~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~  223 (295)
T d2ghsa1         146 --DISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVD  223 (295)
T ss_dssp             --EESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEE
T ss_pred             --ccCCcceeeecCCCceEEEeecccceeeEeeecccccccccceEEEeccCcccccccceEEcCCCCEEeeeeCCCceE
Confidence              112345678888888655 4456788988886421  1    1  11222334457788999999 555555678899


Q ss_pred             EeecCCCCceeeeecccccceEEEEecCCcEEEEEEC-CCCCeEEEec
Q psy12697        547 VCKLHSDKPVKSFEGHTTGQLVHSYKGTGGIFEVCWN-SRGDKVGASA  593 (602)
Q Consensus       547 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s-pdg~~l~~~~  593 (602)
                      .||- +++.+..+.-.           ...+++++|- ||.+.|++.+
T Consensus       224 ~~dp-~G~~~~~i~lP-----------~~~~T~~~FGG~d~~~LyvTt  259 (295)
T d2ghsa1         224 RYDT-DGNHIARYEVP-----------GKQTTCPAFIGPDASRLLVTS  259 (295)
T ss_dssp             EECT-TCCEEEEEECS-----------CSBEEEEEEESTTSCEEEEEE
T ss_pred             EecC-CCcEeeEecCC-----------CCceEEEEEeCCCCCEEEEEE
Confidence            9993 45544444332           1458999995 7888776654

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.65  E-value=1.1e-06  Score=78.69  Aligned_cols=234  Identities=12%  Similarity=0.098  Sum_probs=123.0

Q ss_pred             EECCC--CCeEEEeeCCceEEEEecCCceeEEEeeccCceEEEEeCCCCCCCCCCCCccccccccccCCcceEeeCCCcc
Q psy12697        147 AFSPD--GKFLASGSFDKCVHIWSARTGQLVHSYKGTGGIFEVCWNSRGTPPNPPESMEVDASIEIPQSKATKLIGHESE  224 (602)
Q Consensus       147 ~~s~d--~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~  224 (602)
                      ..|||  |+.+|..+ ++.|.+.|+.+++..                                         .+..+...
T Consensus         5 ~~sPdi~G~~v~f~~-~~dl~~~d~~~g~~~-----------------------------------------~Lt~~~~~   42 (281)
T d1k32a2           5 LLNPDIHGDRIIFVC-CDDLWEHDLKSGSTR-----------------------------------------KIVSNLGV   42 (281)
T ss_dssp             CEEEEEETTEEEEEE-TTEEEEEETTTCCEE-----------------------------------------EEECSSSE
T ss_pred             ccCCCCCCCEEEEEe-CCcEEEEECCCCCEE-----------------------------------------EEecCCCc
Confidence            35788  99888765 456777798887753                                         34456677


Q ss_pred             eEEEEEcCCCCEEEEeeC-CC-----cEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEeeCCCCCeEEEE
Q psy12697        225 VFICAWNPVKDFLASGSG-DS-----TARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFLATG  298 (602)
Q Consensus       225 v~~~~~~~~~~~l~s~~~-dg-----~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~  298 (602)
                      +...+|||||+.||.... ++     .|.+++..++........          ...............|+|+|+.++..
T Consensus        43 ~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~lt~~----------~~~~~~~~~~~~~~~~spdg~~l~~~  112 (281)
T d1k32a2          43 INNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKRITYF----------SGKSTGRRMFTDVAGFDPDGNLIIST  112 (281)
T ss_dssp             EEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEECCCC----------CEEEETTEECSEEEEECTTCCEEEEE
T ss_pred             ccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceEEeeec----------CCCccCccccccccccCCCCCEEEEE
Confidence            888999999998886542 22     355556655543211000          00011112345678899999998875


Q ss_pred             eCC------CeEEEEcCCCcceeecccccCCeEEEEEccCCCEEEEE-ecCCc-----------EEEEeCCCCceeEEee
Q psy12697        299 SYD------GYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSA-GVDKT-----------TIIWDAASGQCEQQFS  360 (602)
Q Consensus       299 ~~d------g~i~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~-----------i~~wd~~~~~~~~~~~  360 (602)
                      ...      ..+...+..+.......  ....... +.+++..++.. ..+..           .......... .....
T Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  188 (281)
T d1k32a2         113 DAMQPFSSMTCLYRVENDGINFVPLN--LGPATHI-LFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGA-FKKIV  188 (281)
T ss_dssp             CTTSSSTTCCEEEEEEGGGTEEEECC--SCSCSEE-EEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTE-EEEEE
T ss_pred             EccCCCccceeeeeecCCCceeEEec--CCcccee-eecCCCeEEEeeccccceeeeeccCCcceeeeeccccc-eeecc
Confidence            432      23444444443333222  2222233 33444433332 21110           1111111111 11111


Q ss_pred             eccCCeeeeeccCCCeEEEeeCC--CeEEEEEcCCCceeeEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCee
Q psy12697        361 FHSAPALDVDWQSNTSFASCSTD--QHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNC  438 (602)
Q Consensus       361 ~~~~~~~~~~~~~~~~~~~~~~~--~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~  438 (602)
                      ..........+.++..+.....+  ..|+++|+.+++... +..+.. .....|+|||+.|+.. .++.|+++|+.+++.
T Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~-lt~~~~-~~~~~~SpDG~~I~f~-~~~~l~~~d~~~g~~  265 (281)
T d1k32a2         189 DMSTHVSSPVIVGHRIYFITDIDGFGQIYSTDLDGKDLRK-HTSFTD-YYPRHLNTDGRRILFS-KGGSIYIFNPDTEKI  265 (281)
T ss_dssp             CCSSCCEEEEEETTEEEEEECTTSSCEEEEEETTSCSCEE-CCCCCS-SCEEEEEESSSCEEEE-ETTEEEEECTTTCCE
T ss_pred             CCccccceeeeeccccceecccccccceEEEeCCCCceEE-eecCCC-cccccCcCCCCEEEEE-eCCEEEEEECCCCCE
Confidence            22223333444555444444433  467888887766433 332222 2234689999998764 468899999988764


Q ss_pred             e
Q psy12697        439 V  439 (602)
Q Consensus       439 ~  439 (602)
                      .
T Consensus       266 ~  266 (281)
T d1k32a2         266 E  266 (281)
T ss_dssp             E
T ss_pred             E
Confidence            4

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.61  E-value=5.1e-05  Score=67.71  Aligned_cols=226  Identities=11%  Similarity=0.027  Sum_probs=145.2

Q ss_pred             EEeeCCCC-CeEEEEeCCCeEEEEcCCCcceeecccccCCeEEEEEccCCCEEEEEecCCcEEEEeCCCCceeEEeeec-
Q psy12697        285 SLDWNNNG-SFLATGSYDGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFH-  362 (602)
Q Consensus       285 ~~~~~~~~-~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~-  362 (602)
                      +..|.+.. .+..+--..+.|.-||..+.....+. ....+.++++.+++.++++ +.+ .+.++|..+++........ 
T Consensus        22 gp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~~~~-~~~~~~~i~~~~dg~l~va-~~~-gl~~~d~~tg~~~~l~~~~~   98 (295)
T d2ghsa1          22 GPTFDPASGTAWWFNILERELHELHLASGRKTVHA-LPFMGSALAKISDSKQLIA-SDD-GLFLRDTATGVLTLHAELES   98 (295)
T ss_dssp             EEEEETTTTEEEEEEGGGTEEEEEETTTTEEEEEE-CSSCEEEEEEEETTEEEEE-ETT-EEEEEETTTCCEEEEECSST
T ss_pred             CCeEECCCCEEEEEECCCCEEEEEECCCCeEEEEE-CCCCcEEEEEecCCCEEEE-EeC-ccEEeecccceeeEEeeeec
Confidence            45677644 44444446788999998876555443 3557889999999876665 444 5899999988765433221 


Q ss_pred             ---cCCeeeeeccCCCeEEEeeC-----CCeEEEEEcCCCceeeEeccCCCCeEEEEECCCCCEEEEE-ECCCeEEEEeC
Q psy12697        363 ---SAPALDVDWQSNTSFASCST-----DQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASC-SDDMTLKIWSL  433 (602)
Q Consensus       363 ---~~~~~~~~~~~~~~~~~~~~-----~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~iwd~  433 (602)
                         ...+.++...+++.+..++.     .+.-.+|.+..++...... .....+.++|+++++.+... +..+.|..|++
T Consensus        99 ~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~-~~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~  177 (295)
T d2ghsa1          99 DLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLFA-DISIPNSICFSPDGTTGYFVDTKVNRLMRVPL  177 (295)
T ss_dssp             TCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEEE-EESSEEEEEECTTSCEEEEEETTTCEEEEEEB
T ss_pred             CCCcccceeeEECCCCCEEEEeccccccccceeEeeecCCcEEEEee-ccCCcceeeecCCCceEEEeecccceeeEeee
Confidence               12466777888888776653     2344566666665444333 33456789999999866555 45678888887


Q ss_pred             CCCeeeEeeccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCc
Q psy12697        434 DKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQ  513 (602)
Q Consensus       434 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~~~~~  513 (602)
                      ........    ......+                      ...+..+..-.+++..+|++.++.-..+.|..||. +|+
T Consensus       178 d~~~~~~~----~~~~~~~----------------------~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~dp-~G~  230 (295)
T d2ghsa1         178 DARTGLPT----GKAEVFI----------------------DSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGN  230 (295)
T ss_dssp             CTTTCCBS----SCCEEEE----------------------ECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCC
T ss_pred             cccccccc----cceEEEe----------------------ccCcccccccceEEcCCCCEEeeeeCCCceEEecC-CCc
Confidence            53211100    0000000                      11122345667888889998888778889999995 688


Q ss_pred             eeeeecccCCCeeEeeec-CCc--eEEEeeC
Q psy12697        514 CEQQFSFHSAPALDVDWQ-SNT--SFASCST  541 (602)
Q Consensus       514 ~~~~~~~~~~~v~~~~~s-~~~--~l~~~~~  541 (602)
                      .+..+......+++++|- ||.  +++|...
T Consensus       231 ~~~~i~lP~~~~T~~~FGG~d~~~LyvTta~  261 (295)
T d2ghsa1         231 HIARYEVPGKQTTCPAFIGPDASRLLVTSAR  261 (295)
T ss_dssp             EEEEEECSCSBEEEEEEESTTSCEEEEEEBC
T ss_pred             EeeEecCCCCceEEEEEeCCCCCEEEEEECC
Confidence            888888766779999995 666  4555443

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.42  E-value=8.2e-06  Score=72.70  Aligned_cols=93  Identities=9%  Similarity=0.032  Sum_probs=64.6

Q ss_pred             eeCCC--CCeEEEEeCCCeEEEEcCCCcceeecccccCCeEEEEEccCCCEEEEEec-C-----CcEEEEeCCCCceeEE
Q psy12697        287 DWNNN--GSFLATGSYDGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGV-D-----KTTIIWDAASGQCEQQ  358 (602)
Q Consensus       287 ~~~~~--~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d-----g~i~~wd~~~~~~~~~  358 (602)
                      ..+|+  |+.++..+ +|.|.+.|+.+.....+..+.+.+...+|||||+.|+.... +     ..|.+++..+++..+.
T Consensus         5 ~~sPdi~G~~v~f~~-~~dl~~~d~~~g~~~~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~l   83 (281)
T d1k32a2           5 LLNPDIHGDRIIFVC-CDDLWEHDLKSGSTRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKRI   83 (281)
T ss_dssp             CEEEEEETTEEEEEE-TTEEEEEETTTCCEEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEEC
T ss_pred             ccCCCCCCCEEEEEe-CCcEEEEECCCCCEEEEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceEEe
Confidence            35688  88887764 56788889998877788778888999999999999986542 2     2477778877765543


Q ss_pred             eee------ccCCeeeeeccCCCeEEEe
Q psy12697        359 FSF------HSAPALDVDWQSNTSFASC  380 (602)
Q Consensus       359 ~~~------~~~~~~~~~~~~~~~~~~~  380 (602)
                      ...      .........|+|++..+..
T Consensus        84 t~~~~~~~~~~~~~~~~~~spdg~~l~~  111 (281)
T d1k32a2          84 TYFSGKSTGRRMFTDVAGFDPDGNLIIS  111 (281)
T ss_dssp             CCCCEEEETTEECSEEEEECTTCCEEEE
T ss_pred             eecCCCccCccccccccccCCCCCEEEE
Confidence            211      1123455678888764443

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=98.23  E-value=0.0016  Score=63.48  Aligned_cols=58  Identities=10%  Similarity=0.015  Sum_probs=41.1

Q ss_pred             CeEEEEeCCCCceeeeecccCCCeeEeee-cCCceEEEeeCCCcEEEeecCCCCceeeee
Q psy12697        502 KTTIIWDAASGQCEQQFSFHSAPALDVDW-QSNTSFASCSTDQHIHVCKLHSDKPVKSFE  560 (602)
Q Consensus       502 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~-s~~~~l~~~~~d~~i~iw~~~~~~~~~~~~  560 (602)
                      |.|.-+|+.+|+.+-+...- .+..+-.. ...+.+++++.||.++.+|.++|+.+..++
T Consensus       444 G~l~AiD~~TG~~~W~~~~~-~~~~~g~l~TagglVf~G~~dg~l~A~Da~tGe~lW~~~  502 (571)
T d2ad6a1         444 GQIRAFDLTTGKAKWTKWEK-FAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFK  502 (571)
T ss_dssp             EEEEEECTTTCCEEEEEEES-SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             ccEEEeccCCCceeeEcCCC-CCCCcceeEecCCEEEEECCCCeEEEEECCCCcEEEEEE
Confidence            67889999999988666532 22222122 234578889999999999988888776664

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=97.92  E-value=0.0019  Score=62.88  Aligned_cols=59  Identities=8%  Similarity=0.178  Sum_probs=42.5

Q ss_pred             CeEEEEeCCCCceeeeecccCCCeeEeeec-CCceEEEeeCCCcEEEeecCCCCceeeeec
Q psy12697        502 KTTIIWDAASGQCEQQFSFHSAPALDVDWQ-SNTSFASCSTDQHIHVCKLHSDKPVKSFEG  561 (602)
Q Consensus       502 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s-~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~  561 (602)
                      |.|.-||+.+++.+-.... ..+..+-.++ ..+++++++.||.++.+|.++|+.+.+++-
T Consensus       438 G~l~A~D~~tGk~~W~~~~-~~~~~gg~l~TagglVF~G~~dg~l~A~Da~tGe~LW~~~l  497 (560)
T d1kv9a2         438 GALLAWDPVKQKAAWKVPY-PTHWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEA  497 (560)
T ss_dssp             EEEEEEETTTTEEEEEEEE-SSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred             cceEEEeCCCCeEeeeccC-CCCCCCceeEECCCEEEEECCCCcEEEEECCCCcEeEEEEC
Confidence            6788899999998876653 2222222223 234788899999999999998888877664

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=97.91  E-value=0.0096  Score=58.13  Aligned_cols=59  Identities=7%  Similarity=-0.019  Sum_probs=42.9

Q ss_pred             CeEEEEeCCCCceeeeecccCCCeeEeeecCCc-eEEEeeCCCcEEEeecCCCCceeeeec
Q psy12697        502 KTTIIWDAASGQCEQQFSFHSAPALDVDWQSNT-SFASCSTDQHIHVCKLHSDKPVKSFEG  561 (602)
Q Consensus       502 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~-~l~~~~~d~~i~iw~~~~~~~~~~~~~  561 (602)
                      |.|.-||+.+++.+-... +..+..+-.++..+ .++.|+.||.++.+|.++|+.+.+++-
T Consensus       453 G~l~A~D~~TG~~~W~~~-~~~~~~gg~lsTagglVF~G~~Dg~l~A~Da~TGe~LW~~~~  512 (596)
T d1w6sa_         453 GQIKAYNAITGDYKWEKM-ERFAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFKI  512 (596)
T ss_dssp             EEEEEECTTTCCEEEEEE-ESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred             ceEEEEeCCCCceecccC-CCCCCccceeEecCCEEEEECCCCeEEEEECCCCcEeeEEEC
Confidence            679999999999876554 23333333333344 777899999999999988888877654

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=97.87  E-value=0.0025  Score=58.97  Aligned_cols=163  Identities=12%  Similarity=0.175  Sum_probs=94.5

Q ss_pred             ceEEEEECCCCCeEEEeeCCc-----------eEEEEecCCceeEEEeeccCceEEEEeCCCCCCCCCCCCccccccccc
Q psy12697        142 PVYSVAFSPDGKFLASGSFDK-----------CVHIWSARTGQLVHSYKGTGGIFEVCWNSRGTPPNPPESMEVDASIEI  210 (602)
Q Consensus       142 ~V~~~~~s~d~~~l~s~~~d~-----------~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (602)
                      ++.......+|+.++.|+.+.           .+.+||..+++....-                                
T Consensus        21 ~~~~a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~--------------------------------   68 (387)
T d1k3ia3          21 PAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRT--------------------------------   68 (387)
T ss_dssp             CSEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCE--------------------------------
T ss_pred             ccEEEEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecC--------------------------------
Confidence            444555667899888887421           3678988877542110                                


Q ss_pred             cCCcceEeeCCCcceEEEEEcCCCCEEEEeeCC-CcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEeeC
Q psy12697        211 PQSKATKLIGHESEVFICAWNPVKDFLASGSGD-STARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWN  289 (602)
Q Consensus       211 ~~~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~d-g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  289 (602)
                           .....|.......++.+++.+++.|+.+ ..+.+||..+..-...               ...+....-.+.+..
T Consensus        69 -----~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~~~yd~~~~~w~~~---------------~~~~~~r~~~~~~~~  128 (387)
T d1k3ia3          69 -----VTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPG---------------PDMQVARGYQSSATM  128 (387)
T ss_dssp             -----EEECSCCCSSCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEEC---------------CCCSSCCSSCEEEEC
T ss_pred             -----CCCCCcccceeEEEEecCCcEEEeecCCCcceeEecCccCccccc---------------ccccccccccceeee
Confidence                 0111222233456788999999988765 5789999876532110               011112333456777


Q ss_pred             CCCCeEEEEeCC------CeEEEEcCCCcceeeccc----------cc-----CCeEEEEEccCCCEEEEEecCCcEEEE
Q psy12697        290 NNGSFLATGSYD------GYARIWTSDGSLKSTLGQ----------HK-----GPIFALKWNKRGNYILSAGVDKTTIIW  348 (602)
Q Consensus       290 ~~~~~l~~~~~d------g~i~i~~~~~~~~~~~~~----------~~-----~~i~~~~~~~~~~~l~~~~~dg~i~~w  348 (602)
                      +||+.++.|+.+      ..+.+||.....-..+..          +.     ..-..+...++++.+..++..+.+.++
T Consensus       129 ~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~g~~~~~~~~~  208 (387)
T d1k3ia3         129 SDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYY  208 (387)
T ss_dssp             TTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEE
T ss_pred             cCCceeeeccccccccccceeeeecCCCCceeecCCCcccccccccccceeeccceeEEEEeCCCCEEEecCcCCcEEec
Confidence            899999988753      368889876543322211          00     001112234567777777777777777


Q ss_pred             eCCCCcee
Q psy12697        349 DAASGQCE  356 (602)
Q Consensus       349 d~~~~~~~  356 (602)
                      +..+....
T Consensus       209 ~~~~~~~~  216 (387)
T d1k3ia3         209 TSGSGDVK  216 (387)
T ss_dssp             CSTTCEEE
T ss_pred             CcccCcEe
Confidence            77766543

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.85  E-value=0.0064  Score=51.73  Aligned_cols=239  Identities=11%  Similarity=0.113  Sum_probs=146.8

Q ss_pred             CeEEEEcCCCcceeecccccCCeEEEEEccCCCEEEEEecCCcEEEEeCCCCceeEEeeeccCCeeeeeccCCCeEEEee
Q psy12697        302 GYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTSFASCS  381 (602)
Q Consensus       302 g~i~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  381 (602)
                      ..+.+.|+.........  .-.-.+.-.+|..+.|+.-+ ..++.++|+++.+.++.+.... ++.--.|..+..++..+
T Consensus        45 ~~VvIidl~n~~~~~Rr--pi~AdsAIMhP~~~IiALra-g~~LQiFnletK~klks~~~~e-~VvfWkWis~~~L~lVT  120 (327)
T d1utca2          45 AQVVIIDMNDPSNPIRR--PISADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD-DVTFWKWISLNTVALVT  120 (327)
T ss_dssp             EEEEEEETTSTTSCEEE--ECCCSEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEECSS-CCCEEEESSSSEEEEEC
T ss_pred             ceEEEEECCCCCcceec--ccchhhhhcCCCCcEEEEec-CCeEEEEehhHhhhhceEEcCC-CcEEEEecCCCEEEEEc
Confidence            47888887632211111  11122445678887776555 6689999999999998887655 56666788888776665


Q ss_pred             CCCeEEEEEcCC-CceeeEeccCC----CCeEEEEECCCCCEEEEEEC-------CCeEEEEeCCCCeeeEeecccccc-
Q psy12697        382 TDQHIHVCKLHS-DKPVKSFEGHT----NEVNAIKWDPQGLLLASCSD-------DMTLKIWSLDKDNCVHDLQAHNKE-  448 (602)
Q Consensus       382 ~~~~i~i~d~~~-~~~~~~~~~~~----~~i~~~~~~~~~~~l~~~~~-------dg~i~iwd~~~~~~~~~~~~~~~~-  448 (602)
                       +..|+-|++.. ..|.+.+..|.    ..|..-..+++.++++..+-       .|.+.+|..+.+ .-+.+++|... 
T Consensus       121 -~taVYHW~~~g~s~P~k~fdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er~-~sQ~ieGhaa~F  198 (327)
T d1utca2         121 -DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAASF  198 (327)
T ss_dssp             -SSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTT-EEEEECCSEEEE
T ss_pred             -CCceEEEcccCCCCchhhhhhcccccCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEeccC-cCccccceeeee
Confidence             45799999954 35777776654    46888889999999876542       377899998754 23334444322 


Q ss_pred             -------------EEEEEECCCC-CC-----CCC-CCcce-----eeeeeeccCCccCCeEEEEEccCCCEEEEEeCCCe
Q psy12697        449 -------------IYTIKWSPTG-PE-----TSN-PNMSL-----IFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKT  503 (602)
Q Consensus       449 -------------i~~~~~~~~~-~~-----~~~-~~~~~-----~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~  503 (602)
                                   +.+.+..... ..     +.. +....     ...+.........-..++..|+.-..+.....-|.
T Consensus       199 ~~~~~~g~~~~~~lf~fa~r~~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~kygiiyviTK~G~  278 (327)
T d1utca2         199 AQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGY  278 (327)
T ss_dssp             EEECCTTCSSCEEEEEEEEEETTEEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEETTTTEEEEEETTSE
T ss_pred             EEEEcCCCCCCceEEEEEECCCCCcEEEEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEeeccCCEEEEEecCcE
Confidence                         2222221000 00     000 00000     00011111122344556778887788888899999


Q ss_pred             EEEEeCCCCceeeeecccCCCeeEeeecCCc-eEEEeeCCCcEE
Q psy12697        504 TIIWDAASGQCEQQFSFHSAPALDVDWQSNT-SFASCSTDQHIH  546 (602)
Q Consensus       504 i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~-~l~~~~~d~~i~  546 (602)
                      |.+||++++.++..-+-..++|...+-..+. -++....+|.|.
T Consensus       279 i~lyDleTgt~i~~nRIs~~~iF~~a~~~~~~Gi~~VNr~GqVl  322 (327)
T d1utca2         279 IHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVL  322 (327)
T ss_dssp             EEEEETTTCCEEEEEECCSSCEEEEEEETTTTEEEEEETTSEEE
T ss_pred             EEEEEcccccEEEEeecCCCceEEeccCCCCceEEEECCCCeEE
Confidence            9999999999998777666777655554443 555555666654

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=97.81  E-value=0.004  Score=60.77  Aligned_cols=59  Identities=7%  Similarity=0.070  Sum_probs=41.9

Q ss_pred             CeEEEEeCCCCceeeeecccCCCeeEeeecCCc-eEEEeeCCCcEEEeecCCCCceeeeec
Q psy12697        502 KTTIIWDAASGQCEQQFSFHSAPALDVDWQSNT-SFASCSTDQHIHVCKLHSDKPVKSFEG  561 (602)
Q Consensus       502 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~-~l~~~~~d~~i~iw~~~~~~~~~~~~~  561 (602)
                      |.|.-||+.+|+.+-..... .+...-..+-.+ .+++|+.||.++.+|.++|+.+..++-
T Consensus       457 G~l~AiD~~tGk~~W~~~~~-~p~~gg~lstagglVF~G~~dg~l~A~Da~TGe~LW~~~~  516 (573)
T d1kb0a2         457 GRLLAWDPVAQKAAWSVEHV-SPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPT  516 (573)
T ss_dssp             EEEEEEETTTTEEEEEEEES-SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred             ccEEEeCCCCCceEeeecCC-CCCCCceEEEcCCEEEEECCCCeEEEEECCCCcEeEEEEC
Confidence            46888899999888766533 222222233344 888899999999999988888877653

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=97.79  E-value=0.0095  Score=57.83  Aligned_cols=50  Identities=16%  Similarity=0.197  Sum_probs=34.9

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCCceeeeecccCCCe-eEeeecCCc--eEEEee
Q psy12697        491 RGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPA-LDVDWQSNT--SFASCS  540 (602)
Q Consensus       491 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v-~~~~~s~~~--~l~~~~  540 (602)
                      .+.++++|+.||.++.+|.++|+.+.+++...... .-+.+..||  +|++.+
T Consensus       468 agglVF~G~~dg~l~A~Da~tGe~LW~~~l~~~~~~~P~ty~~dGkqyv~v~a  520 (560)
T d1kv9a2         468 AGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAGRQYVAIMA  520 (560)
T ss_dssp             TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEE
T ss_pred             CCCEEEEECCCCcEEEEECCCCcEeEEEECCCCccccCEEEEECCEEEEEEEe
Confidence            56788889999999999999999998877533211 113445577  555443

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=97.76  E-value=0.0072  Score=58.93  Aligned_cols=50  Identities=12%  Similarity=0.165  Sum_probs=34.9

Q ss_pred             cCCCEEEEEeCCCeEEEEeCCCCceeeeecccCCCee-EeeecCCc--eEEEe
Q psy12697        490 KRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPAL-DVDWQSNT--SFASC  539 (602)
Q Consensus       490 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~-~~~~s~~~--~l~~~  539 (602)
                      -.|.++++|+.||.++.+|.++|+.+.++....+..- -+.|..||  +++..
T Consensus       486 tagglVF~G~~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~GkQYv~v~  538 (573)
T d1kb0a2         486 TAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQYVSVA  538 (573)
T ss_dssp             ETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEE
T ss_pred             EcCCEEEEECCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCEEEEEEE
Confidence            3677888999999999999999999988775332111 13445577  44443

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=97.65  E-value=0.01  Score=54.61  Aligned_cols=119  Identities=13%  Similarity=0.065  Sum_probs=73.5

Q ss_pred             eEEEEEcCCCCEEEEeeCCC-----------cEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEeeCCCCC
Q psy12697        225 VFICAWNPVKDFLASGSGDS-----------TARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGS  293 (602)
Q Consensus       225 v~~~~~~~~~~~l~s~~~dg-----------~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  293 (602)
                      +.......+++.++.|+.+.           .+.+||..++.-.......             .++.......++.++++
T Consensus        22 ~~~a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~-------------~~~~~~~~~~~~~~~g~   88 (387)
T d1k3ia3          22 AAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTV-------------TKHDMFCPGISMDGNGQ   88 (387)
T ss_dssp             SEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEE-------------CSCCCSSCEEEECTTSC
T ss_pred             cEEEEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCC-------------CCcccceeEEEEecCCc
Confidence            33444456778888777421           3678999887643211110             11223345667889999


Q ss_pred             eEEEEeCC-CeEEEEcCCCcceeecccc--cCCeEEEEEccCCCEEEEEecC------CcEEEEeCCCCcee
Q psy12697        294 FLATGSYD-GYARIWTSDGSLKSTLGQH--KGPIFALKWNKRGNYILSAGVD------KTTIIWDAASGQCE  356 (602)
Q Consensus       294 ~l~~~~~d-g~i~i~~~~~~~~~~~~~~--~~~i~~~~~~~~~~~l~~~~~d------g~i~~wd~~~~~~~  356 (602)
                      +++.|+.+ ..+.+||............  ...-...+..+|++.++.++.+      ..+.+||..+.+..
T Consensus        89 i~v~Gg~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~W~  160 (387)
T d1k3ia3          89 IVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWT  160 (387)
T ss_dssp             EEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEE
T ss_pred             EEEeecCCCcceeEecCccCcccccccccccccccceeeecCCceeeeccccccccccceeeeecCCCCcee
Confidence            99988765 5899999765443333211  1122356667899988888753      36889998887543

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.65  E-value=0.014  Score=50.09  Aligned_cols=223  Identities=12%  Similarity=0.016  Sum_probs=129.4

Q ss_pred             CeEEEEcCCCccee------ecccccCCeEEEEEccCCCEEEEEe-cCCcEEEEeCCCCceeEEeeeccCCeeeee--cc
Q psy12697        302 GYARIWTSDGSLKS------TLGQHKGPIFALKWNKRGNYILSAG-VDKTTIIWDAASGQCEQQFSFHSAPALDVD--WQ  372 (602)
Q Consensus       302 g~i~i~~~~~~~~~------~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~--~~  372 (602)
                      +.|+-.++++....      .+..+...+..++|.+..+.|.-+. .++.|...++...............+..++  |.
T Consensus        10 ~~I~~~~ld~~~~~~~~~~~~~~~~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~~~~p~~iAvD~~   89 (263)
T d1npea_          10 GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHL   89 (263)
T ss_dssp             EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETT
T ss_pred             CeEEEEECCCccccccccccccccCCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEEeccccccEEEEecc
Confidence            45555555543221      2333445577899998877777654 457788888776554444433333444444  44


Q ss_pred             CCCeEEEeeCCCeEEEEEcCCCceeeEeccCCCCeEEEEECCCCCEEEEEECC-Ce--EEEEeCCCCeeeEeeccccccE
Q psy12697        373 SNTSFASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDD-MT--LKIWSLDKDNCVHDLQAHNKEI  449 (602)
Q Consensus       373 ~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-g~--i~iwd~~~~~~~~~~~~~~~~i  449 (602)
                      .+..+.+-...+.|.+.++........+......+..++++|...+|...... +.  |.--+++.........      
T Consensus        90 ~~~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~~i~~------  163 (263)
T d1npea_          90 GRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQ------  163 (263)
T ss_dssp             TTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEEC------
T ss_pred             CCeEEEeccCCCEEEEEecCCceEEEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCceeeee------
Confidence            55556666677899999987665433344444678999999977777655432 22  3333333221111110      


Q ss_pred             EEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEE-eCCCeEEEEeCCCCceeeeecccCCCeeEe
Q psy12697        450 YTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSA-GVDKTTIIWDAASGQCEQQFSFHSAPALDV  528 (602)
Q Consensus       450 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~  528 (602)
                                                  ..-.....+++++.++.|..+ ...+.|...|+........+.+-.. ..++
T Consensus       164 ----------------------------~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g~~~~~v~~~~~~-P~~l  214 (263)
T d1npea_         164 ----------------------------DNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGLQY-PFAV  214 (263)
T ss_dssp             ----------------------------TTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECCCS-EEEE
T ss_pred             ----------------------------ecccccceEEEeecCcEEEEEeCCCCEEEEEECCCCCeEEEECCCCC-cEEE
Confidence                                        012344678887777766555 4567899999876554444443332 3577


Q ss_pred             eecCCceEEEeeCCCcEEEeecCCCCceeee
Q psy12697        529 DWQSNTSFASCSTDQHIHVCKLHSDKPVKSF  559 (602)
Q Consensus       529 ~~s~~~~l~~~~~d~~i~iw~~~~~~~~~~~  559 (602)
                      ++..+..+.+-...+.|...|..+++.+..+
T Consensus       215 av~~~~lYwtd~~~~~I~~~~~~~g~~~~~~  245 (263)
T d1npea_         215 TSYGKNLYYTDWKTNSVIAMDLAISKEMDTF  245 (263)
T ss_dssp             EEETTEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             EEECCEEEEEECCCCEEEEEECCCCccceEE
Confidence            7763224444446678888887766655443

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.55  E-value=0.019  Score=48.83  Aligned_cols=254  Identities=10%  Similarity=0.121  Sum_probs=156.5

Q ss_pred             eeccceeeeecccceee-eeeeccCCceEEEEECCCCCeEEEeeCCceEEEEecCCceeEEEeeccCceEEEEeCCCCCC
Q psy12697        117 VHRLTLPLWDVERGECL-NTLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKGTGGIFEVCWNSRGTP  195 (602)
Q Consensus       117 ~~~~~i~vwd~~~~~~~-~~l~~h~~~V~~~~~s~d~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (602)
                      +...+|.|-|+..+..+ +.--.-    .+.-.+|..+.||--+ ..++.|+|+++.+.++.+..+.++.          
T Consensus        42 ~~~~~VvIidl~n~~~~~Rrpi~A----dsAIMhP~~~IiALra-g~~LQiFnletK~klks~~~~e~Vv----------  106 (327)
T d1utca2          42 GEQAQVVIIDMNDPSNPIRRPISA----DSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDDVT----------  106 (327)
T ss_dssp             TTEEEEEEEETTSTTSCEEEECCC----SEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEECSSCCC----------
T ss_pred             CCCceEEEEECCCCCcceecccch----hhhhcCCCCcEEEEec-CCeEEEEehhHhhhhceEEcCCCcE----------
Confidence            34568899999865533 221111    2344678888887765 5689999999999998877544443          


Q ss_pred             CCCCCCccccccccccCCcceEeeCCCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCccceEEEEEEecCCCc
Q psy12697        196 PNPPESMEVDASIEIPQSKATKLIGHESEVFICAWNPVKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGT  275 (602)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (602)
                                                     --.|-.+ +.|+..+ +..|.-|+++....    +.....++     ..
T Consensus       107 -------------------------------fWkWis~-~~L~lVT-~taVYHW~~~g~s~----P~k~fdR~-----~~  144 (327)
T d1utca2         107 -------------------------------FWKWISL-NTVALVT-DNAVYHWSMEGESQ----PVKMFDRH-----SS  144 (327)
T ss_dssp             -------------------------------EEEESSS-SEEEEEC-SSEEEEEESSSSCC----CEEEEECC-----GG
T ss_pred             -------------------------------EEEecCC-CEEEEEc-CCceEEEcccCCCC----chhhhhhc-----cc
Confidence                                           3444433 3344443 35689999864321    11111111     11


Q ss_pred             ccCCCCceeEEeeCCCCCeEEEEeC-------CCeEEEEcCCCcceeecccccCCeEEEEEccCC---CEEEEEe---cC
Q psy12697        276 EVPSNKDVTSLDWNNNGSFLATGSY-------DGYARIWTSDGSLKSTLGQHKGPIFALKWNKRG---NYILSAG---VD  342 (602)
Q Consensus       276 ~~~~~~~i~~~~~~~~~~~l~~~~~-------dg~i~i~~~~~~~~~~~~~~~~~i~~~~~~~~~---~~l~~~~---~d  342 (602)
                      .  .+..|..-..+++.++++..+-       .|.+.+|..+.+..+.+.+|......+.+..+.   +.++.+.   ..
T Consensus       145 L--~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~~  222 (327)
T d1utca2         145 L--AGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAG  222 (327)
T ss_dssp             G--TTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTEEEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTE
T ss_pred             c--cCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEeccCcCccccceeeeeEEEEcCCCCCCceEEEEEECCCCC
Confidence            1  2567888888999998776432       378999999988888999988766666554222   2333222   23


Q ss_pred             CcEEEEeCCCCce------eE--Eeeec----cCCeeeeeccC-CCeEEEeeCCCeEEEEEcCCCceeeEeccCCCCeEE
Q psy12697        343 KTTIIWDAASGQC------EQ--QFSFH----SAPALDVDWQS-NTSFASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNA  409 (602)
Q Consensus       343 g~i~~wd~~~~~~------~~--~~~~~----~~~~~~~~~~~-~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~  409 (602)
                      +.+.+.++.....      .+  .+...    .+-..++..++ .+.+...+.-|.+++||+.++.++..-+--.+.|..
T Consensus       223 ~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~kygiiyviTK~G~i~lyDleTgt~i~~nRIs~~~iF~  302 (327)
T d1utca2         223 GKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFV  302 (327)
T ss_dssp             EEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEE
T ss_pred             cEEEEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEeeccCCEEEEEecCcEEEEEEcccccEEEEeecCCCceEE
Confidence            6788888765321      11  11111    11233333343 367888899999999999999988777666666665


Q ss_pred             EEECCCCCEEEEEECCCeEE
Q psy12697        410 IKWDPQGLLLASCSDDMTLK  429 (602)
Q Consensus       410 ~~~~~~~~~l~~~~~dg~i~  429 (602)
                      .+-+.+..-++....+|.|.
T Consensus       303 ~a~~~~~~Gi~~VNr~GqVl  322 (327)
T d1utca2         303 TAPHEATAGIIGVNRKGQVL  322 (327)
T ss_dssp             EEEETTTTEEEEEETTSEEE
T ss_pred             eccCCCCceEEEECCCCeEE
Confidence            55555544555555677654

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.55  E-value=0.02  Score=49.23  Aligned_cols=225  Identities=13%  Similarity=0.041  Sum_probs=133.5

Q ss_pred             CeEEEEcCCCcceeecccccCCeEEEEEccCCCEEEEEe-cCCcEEEEeCCCCc----eeEEeeeccCCe--eeeeccCC
Q psy12697        302 GYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAG-VDKTTIIWDAASGQ----CEQQFSFHSAPA--LDVDWQSN  374 (602)
Q Consensus       302 g~i~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~~wd~~~~~----~~~~~~~~~~~~--~~~~~~~~  374 (602)
                      ..|+-.++++.....+......+..+.|.+..+.|.-+. ..+.|.-.++....    ...........+  .++.|..+
T Consensus        10 ~~I~~~~l~~~~~~~~~~~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~glAvD~~~~   89 (266)
T d1ijqa1          10 HEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHS   89 (266)
T ss_dssp             SSEEEEETTSCCCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTT
T ss_pred             CeEEEEECCCCcceeeeCCCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCCcceEEEeeccc
Confidence            347777887665555555566788999998888777664 45556665554321    111112111223  45556667


Q ss_pred             CeEEEeeCCCeEEEEEcCCCceeeEeccCCCCeEEEEECCCCCEEEEEEC--CCeEEEEeCCCCeeeEeeccccccEEEE
Q psy12697        375 TSFASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSD--DMTLKIWSLDKDNCVHDLQAHNKEIYTI  452 (602)
Q Consensus       375 ~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~i~~~  452 (602)
                      ..+.+-...+.|.+.++..................++++|...+|.....  .+.|.-.++...........        
T Consensus        90 ~lY~~d~~~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~~~l~~~--------  161 (266)
T d1ijqa1          90 NIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTE--------  161 (266)
T ss_dssp             EEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECS--------
T ss_pred             eEEEEecCCCEEEeEecCCceEEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCceeccccc--------
Confidence            77777778889999999877665555656677899999996666655432  34455555543221111111        


Q ss_pred             EECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEE-eCCCeEEEEeCCCCceeeeecc--cCCCeeEee
Q psy12697        453 KWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSA-GVDKTTIIWDAASGQCEQQFSF--HSAPALDVD  529 (602)
Q Consensus       453 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~--~~~~v~~~~  529 (602)
                                                .-.....+++++.++.|..+ ...+.|...|+...........  ......+++
T Consensus       162 --------------------------~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~~~~~~~~~~~~~~p~~la  215 (266)
T d1ijqa1         162 --------------------------NIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLA  215 (266)
T ss_dssp             --------------------------SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEE
T ss_pred             --------------------------ccceeeEEEeeccccEEEEecCCcCEEEEEECCCCCEEEEEeCCCcccccEEEE
Confidence                                      12334667777766666655 4567899889865443333322  223356677


Q ss_pred             ecCCceEEEeeCCCcEEEeecCCCCceeeee
Q psy12697        530 WQSNTSFASCSTDQHIHVCKLHSDKPVKSFE  560 (602)
Q Consensus       530 ~s~~~~l~~~~~d~~i~iw~~~~~~~~~~~~  560 (602)
                      +..+..+.+-..++.|...+..++.....+.
T Consensus       216 v~~~~ly~td~~~~~I~~~~~~~g~~~~~~~  246 (266)
T d1ijqa1         216 VFEDKVFWTDIINEAIFSANRLTGSDVNLLA  246 (266)
T ss_dssp             EETTEEEEEETTTTEEEEEETTTCCCCEEEE
T ss_pred             EECCEEEEEECCCCeEEEEECCCCcceEEEE
Confidence            7744344555567888888877766554443

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.54  E-value=0.02  Score=49.10  Aligned_cols=216  Identities=10%  Similarity=0.004  Sum_probs=128.6

Q ss_pred             CceeEEeeCCCCCeEEEEe-CCCeEEEEcCCCcceeecc-cccCCeEEEEEccCCCEEEEE-ecCCcEEEEeCCCCceeE
Q psy12697        281 KDVTSLDWNNNGSFLATGS-YDGYARIWTSDGSLKSTLG-QHKGPIFALKWNKRGNYILSA-GVDKTTIIWDAASGQCEQ  357 (602)
Q Consensus       281 ~~i~~~~~~~~~~~l~~~~-~dg~i~i~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~-~~dg~i~~wd~~~~~~~~  357 (602)
                      ..+..++|.+..+.+.... .++.|...++++.....+. .....+..+++..-+..|..+ ...+.|.+.++.......
T Consensus        36 ~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~~~  115 (263)
T d1npea_          36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRV  115 (263)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred             CcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEEeccccccEEEEeccCCeEEEeccCCCEEEEEecCCceEEE
Confidence            4477899998777776654 4577888888866554443 333568899998766666644 456789999987655433


Q ss_pred             EeeeccCCeeeeeccCCC-eEEEeeC---CCeEEEEEcCCCceeeEeccCCCCeEEEEECCCCCEEEEEE-CCCeEEEEe
Q psy12697        358 QFSFHSAPALDVDWQSNT-SFASCST---DQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCS-DDMTLKIWS  432 (602)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~-~~~~~~~---~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~iwd  432 (602)
                      ........+..++..|.. .++....   ...|...++............-.....+++++.++.|..+. ..+.|...+
T Consensus       116 l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~~i~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~  195 (263)
T d1npea_         116 LFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLN  195 (263)
T ss_dssp             EECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             EecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCceeeeeecccccceEEEeecCcEEEEEeCCCCEEEEEE
Confidence            333333556777776653 3332221   23455556655443333333445678999998877776654 567888888


Q ss_pred             CCCCeeeEeeccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCC
Q psy12697        433 LDKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASG  512 (602)
Q Consensus       433 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~~~~  512 (602)
                      +........+....                                   ....+++. ++.+..+-...+.|...|..++
T Consensus       196 ~~g~~~~~v~~~~~-----------------------------------~P~~lav~-~~~lYwtd~~~~~I~~~~~~~g  239 (263)
T d1npea_         196 PAQPGRRKVLEGLQ-----------------------------------YPFAVTSY-GKNLYYTDWKTNSVIAMDLAIS  239 (263)
T ss_dssp             TTEEEEEEEEECCC-----------------------------------SEEEEEEE-TTEEEEEETTTTEEEEEETTTT
T ss_pred             CCCCCeEEEECCCC-----------------------------------CcEEEEEE-CCEEEEEECCCCEEEEEECCCC
Confidence            86543322222111                                   11234443 3333344446688999999888


Q ss_pred             ceeeeecc-cCCCeeEeeecC
Q psy12697        513 QCEQQFSF-HSAPALDVDWQS  532 (602)
Q Consensus       513 ~~~~~~~~-~~~~v~~~~~s~  532 (602)
                      +.+..+.. .......+++.+
T Consensus       240 ~~~~~~~~~~~~~~~gi~v~~  260 (263)
T d1npea_         240 KEMDTFHPHKQTRLYGITIAL  260 (263)
T ss_dssp             EEEEEECCSSCCCCCCEEEEC
T ss_pred             ccceEECCCCCCCcceEEEeC
Confidence            87765542 223344555433

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=97.53  E-value=0.0093  Score=57.99  Aligned_cols=159  Identities=10%  Similarity=0.073  Sum_probs=94.9

Q ss_pred             CCEEEEEecCCcEEEEeCCCCceeEEeeeccCC----eeeeeccCCCeEEEeeC------CCeEEEEEcCCCceeeEecc
Q psy12697        333 GNYILSAGVDKTTIIWDAASGQCEQQFSFHSAP----ALDVDWQSNTSFASCST------DQHIHVCKLHSDKPVKSFEG  402 (602)
Q Consensus       333 ~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~------~~~i~i~d~~~~~~~~~~~~  402 (602)
                      +..++.++.||.+.-.|.++|+...........    +...-...++.++++..      .|.|+-+|+.+++.+-.+..
T Consensus       115 ~~~i~~~~~~g~l~alda~tG~~~w~~~~~~~~~~~~~t~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t  194 (571)
T d2ad6a1         115 AGQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVAKDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFA  194 (571)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEES
T ss_pred             CCeEEEEeCCCcEEeeehhhhhhhccccccccccccceeecCeEeCCeEEEeeccccccccCcEEEEECCCCcEEEEEec
Confidence            346888889999999999999988776543211    11111112355666553      67899999999998776542


Q ss_pred             CC-------------------------------------CCe-EEEEECCCCCEEEEEECC----------------CeE
Q psy12697        403 HT-------------------------------------NEV-NAIKWDPQGLLLASCSDD----------------MTL  428 (602)
Q Consensus       403 ~~-------------------------------------~~i-~~~~~~~~~~~l~~~~~d----------------g~i  428 (602)
                      ..                                     ..+ ...++++...++..+..+                ..+
T Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~vW~~~s~D~~~g~~y~~tg~~~p~~~~~r~g~n~~s~sv  274 (571)
T d2ad6a1         195 TGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTI  274 (571)
T ss_dssp             SSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEE
T ss_pred             cCCcccccccccccccccccCcccccccccCCcccccCCCccccccccchhcCeeeeecccccCccccccccccccccce
Confidence            11                                     111 235667777776665542                346


Q ss_pred             EEEeCCCCeeeEeeccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCC---EEEEEeCCCeEE
Q psy12697        429 KIWSLDKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGN---YILSAGVDKTTI  505 (602)
Q Consensus       429 ~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~---~l~s~~~dg~i~  505 (602)
                      .-.|.++++.+..++.....+....                         ...+.....+..+++   .++.++.+|.++
T Consensus       275 vAld~~TG~~~W~~q~~~~D~Wd~D-------------------------~~~~~~l~~~~~~g~~~~~v~~~~k~G~l~  329 (571)
T d2ad6a1         275 WGRDLDTGMAKWGYQKTPHDEWDFA-------------------------GVNQMVLTDQPVNGKMTPLLSHIDRNGILY  329 (571)
T ss_dssp             EEEETTTCCEEEEEESSTTCSSCCC-------------------------CCCCCEEEEEEETTEEEEEEEEECTTSEEE
T ss_pred             eeeeccchhheecccccCccccccc-------------------------cccccceeeeeccCccccceeeccccceEE
Confidence            6667777777666654333221110                         001111111222333   467788899999


Q ss_pred             EEeCCCCceee
Q psy12697        506 IWDAASGQCEQ  516 (602)
Q Consensus       506 iwd~~~~~~~~  516 (602)
                      +.|.++|+.+.
T Consensus       330 vlDr~tG~~i~  340 (571)
T d2ad6a1         330 TLNRENGNLIV  340 (571)
T ss_dssp             EEETTTCCEEE
T ss_pred             EEecCCCcEee
Confidence            99999998764

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.51  E-value=0.0057  Score=55.12  Aligned_cols=207  Identities=7%  Similarity=0.060  Sum_probs=114.2

Q ss_pred             cCCCEEEEEe-cCCcEEEEeCCCCceeEEeeecc-CCeeeeec--cCCCeEEEe-eCC------------------CeEE
Q psy12697        331 KRGNYILSAG-VDKTTIIWDAASGQCEQQFSFHS-APALDVDW--QSNTSFASC-STD------------------QHIH  387 (602)
Q Consensus       331 ~~~~~l~~~~-~dg~i~~wd~~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~~-~~~------------------~~i~  387 (602)
                      +||+++++.. .+.+|.+.|+.+.++.+...... ..+..+..  .++..++++ +..                  +.+.
T Consensus        97 yDGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y~~~~t  176 (459)
T d1fwxa2          97 YDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFT  176 (459)
T ss_dssp             EEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-EEEEEE
T ss_pred             cceeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccchhhcceEEE
Confidence            4788888766 57899999999999877554422 22333333  334334433 321                  2356


Q ss_pred             EEEcCCCceeeEeccCCCCeEEEEECCCCCEEEEEECCC--e-------------EEEEeCCCCeeeEeecccc---ccE
Q psy12697        388 VCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDM--T-------------LKIWSLDKDNCVHDLQAHN---KEI  449 (602)
Q Consensus       388 i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg--~-------------i~iwd~~~~~~~~~~~~~~---~~i  449 (602)
                      ++|..+.+...++.- ......+.++|+|+++++.+.+.  .             +.++++...+... -.+..   +.+
T Consensus       177 ~ID~~tm~V~~QV~V-~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av-~~Gk~~eingV  254 (459)
T d1fwxa2         177 AVDADKWEVAWQVLV-SGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAI-AAGDYQELNGV  254 (459)
T ss_dssp             EEETTTTEEEEEEEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHH-HHTCSEEETTE
T ss_pred             EEecCCceEEEEeee-CCChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhh-hcCCcEEeCCc
Confidence            788888876665553 23567899999999999987542  1             2233321100000 00000   000


Q ss_pred             EEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEEEccCCCEEEEEe-CCCeEEEEeCCCCcee------------e
Q psy12697        450 YTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAG-VDKTTIIWDAASGQCE------------Q  516 (602)
Q Consensus       450 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~-~dg~i~iwd~~~~~~~------------~  516 (602)
                      .-+.-    ...  ........     -.-......+.++|||+|+++++ .+.++.|+|++.-...            .
T Consensus       255 ~VVD~----~~~--~~~~v~~y-----IPVpKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~  323 (459)
T d1fwxa2         255 KVVDG----RKE--ASSLFTRY-----IPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVA  323 (459)
T ss_dssp             EEEEC----SGG----CSSEEE-----EEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEE
T ss_pred             eeecc----ccc--CCcceeEE-----EecCCCCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccEEe
Confidence            00000    000  00000000     00112345689999999988655 5899999998642211            1


Q ss_pred             eecccCCCeeEeeecCCc-eEEEeeCCCcEEEeecC
Q psy12697        517 QFSFHSAPALDVDWQSNT-SFASCSTDQHIHVCKLH  551 (602)
Q Consensus       517 ~~~~~~~~v~~~~~s~~~-~l~~~~~d~~i~iw~~~  551 (602)
                      ... ..-.-...+|...| -..+.--|..|.-|++.
T Consensus       324 e~e-lglgPLht~fd~~g~aytslfids~v~kw~~~  358 (459)
T d1fwxa2         324 EPE-LGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIE  358 (459)
T ss_dssp             CCB-CCSCEEEEEECTTSEEEEEETTTTEEEEEEHH
T ss_pred             ecc-cCcCccccccCCCceEEEEeeccceEEEEecc
Confidence            111 12234556888888 56666789999999985

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.36  E-value=0.077  Score=51.46  Aligned_cols=60  Identities=15%  Similarity=0.073  Sum_probs=44.8

Q ss_pred             CCeEEEEeCCCCceeeeecccCCCeeEeeecCCc-eEEEeeCCCcEEEeecCCCCceeeeec
Q psy12697        501 DKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNT-SFASCSTDQHIHVCKLHSDKPVKSFEG  561 (602)
Q Consensus       501 dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~-~l~~~~~d~~i~iw~~~~~~~~~~~~~  561 (602)
                      .|.|.-+|+.+|+.+-....+ .++..-..+..+ .+++|+.||.++.+|.++|+.+.+++-
T Consensus       465 ~G~l~AiD~~TG~i~W~~~~~-~p~~~g~lstagglVF~Gt~dg~l~A~Da~TGe~LW~~~~  525 (582)
T d1flga_         465 VGSLRAMDPVSGKVVWEHKEH-LPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQT  525 (582)
T ss_dssp             SEEEEEECTTTCCEEEEEEES-SCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred             CCeEEEEcCCCCcEEeecCCC-CCCccceeEEcCCeEEEeCCCCeEEEEECCCCcEeEEEEC
Confidence            377899999999988777643 333332333445 788899999999999988888877664

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=97.26  E-value=0.065  Score=52.07  Aligned_cols=158  Identities=11%  Similarity=0.090  Sum_probs=94.5

Q ss_pred             CEEEEEecCCcEEEEeCCCCceeEEeeeccCCe-eeeecc---CCCeEEEeeC------CCeEEEEEcCCCceeeEeccC
Q psy12697        334 NYILSAGVDKTTIIWDAASGQCEQQFSFHSAPA-LDVDWQ---SNTSFASCST------DQHIHVCKLHSDKPVKSFEGH  403 (602)
Q Consensus       334 ~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~-~~~~~~---~~~~~~~~~~------~~~i~i~d~~~~~~~~~~~~~  403 (602)
                      .+++.++.|+.+.-.|.++++.+..+....... ..+.-.   -++.++++..      .|.|+-+|..+++.+-++...
T Consensus       122 ~~v~~~t~dg~l~Alda~tG~~~w~~~~~d~~~~~~~t~~P~v~~~~vivg~~~~e~~~~G~v~A~Da~TG~~~W~~~t~  201 (596)
T d1w6sa_         122 ALILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVVKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYAT  201 (596)
T ss_dssp             CEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESS
T ss_pred             eEEEEEeCCCCeEeeccccCceeccccccccccccccccCCcEECCeEEEeeccccccccCceEEEECCCCcEEEEeecc
Confidence            468889999999999999999988775422111 111111   1466666654      489999999999988765421


Q ss_pred             C--------------------------------------CCeEEEEECCCCCEEEEEECC----------------CeEE
Q psy12697        404 T--------------------------------------NEVNAIKWDPQGLLLASCSDD----------------MTLK  429 (602)
Q Consensus       404 ~--------------------------------------~~i~~~~~~~~~~~l~~~~~d----------------g~i~  429 (602)
                      .                                      ..-..+++++...++..+..+                ..|.
T Consensus       202 ~~~~~~~~~~~~~~~~~~~g~~~~~~~tw~g~~~~~gg~~~W~~~s~D~~~~lvy~~tg~~~p~~~~~r~g~n~ys~siv  281 (596)
T d1w6sa_         202 GPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIF  281 (596)
T ss_dssp             SCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEE
T ss_pred             CCccccccccccccccccccccccccccCCCCceecCCCccccccccccCCCeeeccccccccccccccccccccccccc
Confidence            0                                      012245667766666665432                3466


Q ss_pred             EEeCCCCeeeEeeccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEEEE-EccCC---CEEEEEeCCCeEE
Q psy12697        430 IWSLDKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALK-WNKRG---NYILSAGVDKTTI  505 (602)
Q Consensus       430 iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~-~s~~~---~~l~s~~~dg~i~  505 (602)
                      -.|+++++.+..++.....+.....                         .....-+. ...+|   +.++....+|.+.
T Consensus       282 AlD~~TG~~~W~~Q~~~~D~Wd~d~-------------------------~~~~~l~d~~~~~G~~~~~v~~~~k~G~~~  336 (596)
T d1w6sa_         282 GRDADTGEAKFGYQKTPHDEWDYAG-------------------------VNVMMLSEQKDKDGKARKLLTHPDRNGIVY  336 (596)
T ss_dssp             EEETTTCCEEEEEESSTTCSSCCCC-------------------------CCCCEEEEEECTTSCEEEEEEEECTTSEEE
T ss_pred             ccccccccccccccceeccccCCcc-------------------------ccceeeeeccccccccccceecccccccee
Confidence            6677777776655532222111000                         00111111 11233   3577788899999


Q ss_pred             EEeCCCCceee
Q psy12697        506 IWDAASGQCEQ  516 (602)
Q Consensus       506 iwd~~~~~~~~  516 (602)
                      ++|..+|+++.
T Consensus       337 vlDr~tG~~i~  347 (596)
T d1w6sa_         337 TLDRTDGALVS  347 (596)
T ss_dssp             EEETTTCCEEE
T ss_pred             eecCCCCceee
Confidence            99999998774

>d1uuja_ a.221.1.1 (A:) Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain
superfamily: Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain
family: Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain
domain: Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.03  E-value=9.8e-06  Score=52.52  Aligned_cols=56  Identities=23%  Similarity=0.323  Sum_probs=40.4

Q ss_pred             cchhhhhhhhhhhcCceeeeeccccccCCccCC-----CCCCcCCchhHHHHHHhhceeEE
Q psy12697          6 DEVNFLVYRYLQESGFQHSAYTFGIESHISQSN-----IDGALVPPAALLSIIQKGLQYTE   61 (602)
Q Consensus         6 ~e~n~li~ryL~e~g~~~~a~~~~~e~~~~~~~-----~~~~~~~~~~li~~~qk~l~~~~   61 (602)
                      +|||..|..||+.+||.++|.+|.+|+.++...     +.+-..+.+.=|-.|||.+|-.|
T Consensus         8 eeL~kaI~~Yl~~~~~~~~~~~l~~e~~l~~~~~~~~ky~glLEKKWtSViRLQkKImdLE   68 (76)
T d1uuja_           8 DELNRAIADYLRSNGYEEAYSVFKKEAELDMNEELDKKYAGLLEKKWTSVIRLQKKVMELE   68 (76)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHTTCCCCHHHHHHHTTHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCcHHHHHHHHHHHCCCCChhhhhhhcCcchhHHHHHHHHHHHHHHHH
Confidence            799999999999999999999999999875221     11111233344577888876544

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=96.65  E-value=0.21  Score=44.80  Aligned_cols=123  Identities=10%  Similarity=0.083  Sum_probs=70.8

Q ss_pred             EEEEecCCcEEEEeCCCCceeEEeeeccCC-------------e----------------------------eeeeccC-
Q psy12697        336 ILSAGVDKTTIIWDAASGQCEQQFSFHSAP-------------A----------------------------LDVDWQS-  373 (602)
Q Consensus       336 l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~-------------~----------------------------~~~~~~~-  373 (602)
                      +.+|+..|.++++-+.+++.++.+......             +                            ..+.+.. 
T Consensus        16 f~SgG~sG~v~v~G~PSmR~l~~ipvF~~~~~~G~G~~~es~~il~~~~~~~t~~~l~~~g~~~~~~GD~HHP~~S~TdG   95 (459)
T d1fwxa2          16 FWSSGQSGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHDNGDLHHVHMSFTEG   95 (459)
T ss_dssp             EECCBTTCEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCC--------------CCCCCBCCEEEEEETT
T ss_pred             EeeCCccceEEEEecCCcceEEEeeeecCCCCcccCcchhHHHHhhcccChhhhhhhhccCcccccCCCcCCCcccccCC
Confidence            567888999999998888887766432110             0                            0111222 


Q ss_pred             --CCe--EEEeeCCCeEEEEEcCCCceeeEecc-CCCCeEEEEEC--CCCCEEEEEECCC------------------eE
Q psy12697        374 --NTS--FASCSTDQHIHVCKLHSDKPVKSFEG-HTNEVNAIKWD--PQGLLLASCSDDM------------------TL  428 (602)
Q Consensus       374 --~~~--~~~~~~~~~i~i~d~~~~~~~~~~~~-~~~~i~~~~~~--~~~~~l~~~~~dg------------------~i  428 (602)
                        +++  |+.-..++.|.+.|+.+.+..+.... ....+..++..  |+..+++.++.+.                  .+
T Consensus        96 tyDGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y~~~~  175 (459)
T d1fwxa2          96 KYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVF  175 (459)
T ss_dssp             EEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-EEEEE
T ss_pred             ccceeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccchhhcceEE
Confidence              233  34444678899999999887554433 23456666664  4566787777633                  24


Q ss_pred             EEEeCCCCeeeEeeccccccEEEEEECCCCC
Q psy12697        429 KIWSLDKDNCVHDLQAHNKEIYTIKWSPTGP  459 (602)
Q Consensus       429 ~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~  459 (602)
                      ..+|..+.+....+... .....+.+++++.
T Consensus       176 t~ID~~tm~V~~QV~V~-g~ld~~~~s~dGK  205 (459)
T d1fwxa2         176 TAVDADKWEVAWQVLVS-GNLDNCDADYEGK  205 (459)
T ss_dssp             EEEETTTTEEEEEEEES-SCCCCEEECSSSS
T ss_pred             EEEecCCceEEEEeeeC-CChhccccCCCCC
Confidence            56676666555444322 1233344444443

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.59  E-value=0.28  Score=45.33  Aligned_cols=203  Identities=13%  Similarity=0.121  Sum_probs=103.3

Q ss_pred             CCcceEEEEEcCCCCEEEEee-----CCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEeeCCCCCeE
Q psy12697        221 HESEVFICAWNPVKDFLASGS-----GDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFL  295 (602)
Q Consensus       221 h~~~v~~~~~~~~~~~l~s~~-----~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l  295 (602)
                      +.-.+...+++|++++++.+-     ....+++.|+.+++...     ....            ......++|.+|++.|
T Consensus       123 ~~~~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~-----~~i~------------~~~~~~~~W~~D~~~~  185 (430)
T d1qfma1         123 GTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELP-----DVLE------------RVKFSCMAWTHDGKGM  185 (430)
T ss_dssp             SCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEE-----EEEE------------EECSCCEEECTTSSEE
T ss_pred             ccceecceEecCCCCEEEEEeccccCchheeEEeccCcceecc-----cccc------------cccccceEEcCCCCEE
Confidence            333455678899999887532     23469999999886321     1111            1123578899999987


Q ss_pred             EEEeCC----------------CeEEEEcCCCc---ceeeccc--ccCCeEEEEEccCCCEEEEEec---CCcEEEE--e
Q psy12697        296 ATGSYD----------------GYARIWTSDGS---LKSTLGQ--HKGPIFALKWNKRGNYILSAGV---DKTTIIW--D  349 (602)
Q Consensus       296 ~~~~~d----------------g~i~i~~~~~~---~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~---dg~i~~w--d  349 (602)
                      +....+                ..|..+.+...   ....+..  ....+..+..++++++++....   +....+|  |
T Consensus       186 ~Y~~~~~~~~~~~~~~~~~~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~~~~~d  265 (430)
T d1qfma1         186 FYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCD  265 (430)
T ss_dssp             EEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEE
T ss_pred             EEEEeccccCcccccccccCCcceEEEEECCCCccccccccccccCCceEEeeeccCCcceeeEEeeccCCccEEEEEee
Confidence            754432                24666665432   1222232  2334667788999998874432   3333344  4


Q ss_pred             CCCCce--------eEEeeeccCCeeeeeccCCCeEEEee----CCCeEEEEEcCCCce--eeEe-ccCCCCeEEEEECC
Q psy12697        350 AASGQC--------EQQFSFHSAPALDVDWQSNTSFASCS----TDQHIHVCKLHSDKP--VKSF-EGHTNEVNAIKWDP  414 (602)
Q Consensus       350 ~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~i~i~d~~~~~~--~~~~-~~~~~~i~~~~~~~  414 (602)
                      +.....        ............-+. ..++.+..-+    .++.|...++.....  ...+ ..+...+..-.+..
T Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Tn~~a~~~~L~~~~~~~~~~~~w~~vi~~~~~~~~~~~~~~  344 (430)
T d1qfma1         266 LQQESNGITGILKWVKLIDNFEGEYDYVT-NEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACV  344 (430)
T ss_dssp             GGGSSSSSCSSCCCEEEECSSSSCEEEEE-EETTEEEEEECTTCTTCEEEEEETTBCCGGGCEEEECCCSSCEEEEEEEE
T ss_pred             CCCcccccccccceeEeecccccceEEEe-cCCceeecccCcccccceeEEecCCCCccccceEEecccCcceeeeEEEE
Confidence            432211        111111111122122 2233333322    245666677665432  1233 33444454434444


Q ss_pred             CCCEEEEE-ECCC--eEEEEeCCCCeeeEe
Q psy12697        415 QGLLLASC-SDDM--TLKIWSLDKDNCVHD  441 (602)
Q Consensus       415 ~~~~l~~~-~~dg--~i~iwd~~~~~~~~~  441 (602)
                      .+.+|+.. -.++  .|+++++.++.....
T Consensus       345 ~~~~lvl~~~~~~~~~l~v~~~~~~~~~~~  374 (430)
T d1qfma1         345 RSNFLVLCYLHDVKNTLQLHDLATGALLKI  374 (430)
T ss_dssp             TTTEEEEEEEETTEEEEEEEETTTCCEEEE
T ss_pred             ECCEEEEEEEcCCEeEEEEEECCCCcEEEe
Confidence            44455544 4554  588888887655443

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=96.47  E-value=0.25  Score=43.71  Aligned_cols=101  Identities=7%  Similarity=-0.016  Sum_probs=55.6

Q ss_pred             CCeEEEEEccCCCEEEEEeC---------------CCeEEEEeCCCCceeeeecccCCCeeEeeecCCc--eEEEeeCCC
Q psy12697        481 GPIFALKWNKRGNYILSAGV---------------DKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNT--SFASCSTDQ  543 (602)
Q Consensus       481 ~~v~~i~~s~~~~~l~s~~~---------------dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~--~l~~~~~d~  543 (602)
                      ...+++++..+|.+++|-..               -+...+|....++.. .....-...+.++++||+  .+++-+..+
T Consensus       150 ~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~~~~~-~~~~~l~~pNGI~~s~d~~~lyVa~t~~~  228 (340)
T d1v04a_         150 PSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPNDVR-VVAEGFDFANGINISPDGKYVYIAELLAH  228 (340)
T ss_dssp             SSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEECSSCEE-EEEEEESSEEEEEECTTSSEEEEEEGGGT
T ss_pred             cCccceEEecCCCEEEecCccCcChhhhhhhHhhcCCceeEEEEcCCceE-EEcCCCCccceeEECCCCCEEEEEeCCCC
Confidence            34566777777777776210               012333333333332 222233457899999998  556666788


Q ss_pred             cEEEeecCCCCceeeeecccccceEEEEecCCcEEEEEECCC-CCeEEE
Q psy12697        544 HIHVCKLHSDKPVKSFEGHTTGQLVHSYKGTGGIFEVCWNSR-GDKVGA  591 (602)
Q Consensus       544 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd-g~~l~~  591 (602)
                      +|++|++.....+..         .......+..-.+.++++ |.+.+.
T Consensus       229 ~i~~y~~~~~~~l~~---------~~~~~l~~~pDNi~~d~~~g~lwva  268 (340)
T d1v04a_         229 KIHVYEKHANWTLTP---------LRVLSFDTLVDNISVDPVTGDLWVG  268 (340)
T ss_dssp             EEEEEEECTTSCEEE---------EEEEECSSEEEEEEECTTTCCEEEE
T ss_pred             eEEEEEeCCCcccce---------EEEecCCCCCCccEEecCCCEEEEE
Confidence            999999865432221         112223455667777764 444433

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.45  E-value=0.22  Score=42.46  Aligned_cols=157  Identities=11%  Similarity=-0.038  Sum_probs=99.1

Q ss_pred             CCceeEEeeCCCCCeEEEEe-CCCeEEEEcCCCc-----ceeecccccCCeEEEEEccCCCEEEEE-ecCCcEEEEeCCC
Q psy12697        280 NKDVTSLDWNNNGSFLATGS-YDGYARIWTSDGS-----LKSTLGQHKGPIFALKWNKRGNYILSA-GVDKTTIIWDAAS  352 (602)
Q Consensus       280 ~~~i~~~~~~~~~~~l~~~~-~dg~i~i~~~~~~-----~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~~wd~~~  352 (602)
                      ...+.+++|++..+.+.... ..+.|.-.++++.     ...........+..+++.+.+..|..+ ...+.|.+.++..
T Consensus        29 ~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~glAvD~~~~~lY~~d~~~~~I~v~~~~g  108 (266)
T d1ijqa1          29 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG  108 (266)
T ss_dssp             CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred             CCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCCcceEEEeeccceEEEEecCCCEEEeEecCC
Confidence            35678899998877777664 4566766665532     122223333456788888766666655 4567899999887


Q ss_pred             CceeEEeeeccCCeeeeeccCC-CeEEEee--CCCeEEEEEcCCCceeeEeccCCCCeEEEEECCCCCEEEEE-ECCCeE
Q psy12697        353 GQCEQQFSFHSAPALDVDWQSN-TSFASCS--TDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASC-SDDMTL  428 (602)
Q Consensus       353 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i  428 (602)
                      ................++..|. +.+....  ..+.|.-.++............-.....+++++.++.|..+ ...+.|
T Consensus       109 ~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~~~l~~~~~~~p~gl~iD~~~~~lYw~d~~~~~I  188 (266)
T d1ijqa1         109 VKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSI  188 (266)
T ss_dssp             SSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEE
T ss_pred             ceEEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCceecccccccceeeEEEeeccccEEEEecCCcCEE
Confidence            6655555555556777777664 4444333  34567777776554444344344567899999987776666 446788


Q ss_pred             EEEeCCCC
Q psy12697        429 KIWSLDKD  436 (602)
Q Consensus       429 ~iwd~~~~  436 (602)
                      ...++...
T Consensus       189 ~~~~~dG~  196 (266)
T d1ijqa1         189 SSIDVNGG  196 (266)
T ss_dssp             EEEETTSC
T ss_pred             EEEECCCC
Confidence            88887643

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.41  E-value=0.36  Score=44.56  Aligned_cols=245  Identities=12%  Similarity=0.067  Sum_probs=124.3

Q ss_pred             cCCceEEEEECCCCCeEEEe-----eCCceEEEEecCCceeEEEeeccCceEEEEeCCCCCCCCCCCCccccccccccCC
Q psy12697        139 HTEPVYSVAFSPDGKFLASG-----SFDKCVHIWSARTGQLVHSYKGTGGIFEVCWNSRGTPPNPPESMEVDASIEIPQS  213 (602)
Q Consensus       139 h~~~V~~~~~s~d~~~l~s~-----~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  213 (602)
                      +.-.+...++|||++++|-+     +....|++.|+.+|+.+...                                   
T Consensus       123 ~~~~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~-----------------------------------  167 (430)
T d1qfma1         123 GTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDV-----------------------------------  167 (430)
T ss_dssp             SCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEE-----------------------------------
T ss_pred             ccceecceEecCCCCEEEEEeccccCchheeEEeccCcceecccc-----------------------------------
Confidence            44445667899999988853     23457999999999876321                                   


Q ss_pred             cceEeeCCCcceEEEEEcCCCCEEEEeeCC----------------CcEEEEeCCCCCCCCCccceEEEEEEecCCCccc
Q psy12697        214 KATKLIGHESEVFICAWNPVKDFLASGSGD----------------STARIWDMTDSTKKDPKELQIVLRHCISKGGTEV  277 (602)
Q Consensus       214 ~~~~l~~h~~~v~~~~~~~~~~~l~s~~~d----------------g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (602)
                          +.  ......++|.+|++.|+....+                ..+..|.+.+.......    ..    .    ..
T Consensus       168 ----i~--~~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~~~~~~~~~~v~~h~lgt~~~~d~~----v~----~----e~  229 (430)
T d1qfma1         168 ----LE--RVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDIL----CA----E----FP  229 (430)
T ss_dssp             ----EE--EECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEE----EE----C----CT
T ss_pred             ----cc--cccccceEEcCCCCEEEEEEeccccCcccccccccCCcceEEEEECCCCcccccc----cc----c----cc
Confidence                00  0111347788888877654332                23555555544321100    00    0    01


Q ss_pred             CCCCceeEEeeCCCCCeEEEEeC---CCe--EEEEcCCCc---------ceeecccccCCeEEEEEccCCCEEEEEe---
Q psy12697        278 PSNKDVTSLDWNNNGSFLATGSY---DGY--ARIWTSDGS---------LKSTLGQHKGPIFALKWNKRGNYILSAG---  340 (602)
Q Consensus       278 ~~~~~i~~~~~~~~~~~l~~~~~---dg~--i~i~~~~~~---------~~~~~~~~~~~i~~~~~~~~~~~l~~~~---  340 (602)
                      .....+..+..++++++++....   ++.  +.+.+....         ..............+. ..++.+++...   
T Consensus       230 d~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Tn~~a  308 (430)
T d1qfma1         230 DEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYDYVT-NEGTVFTFKTNRHS  308 (430)
T ss_dssp             TCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEEEEE-EETTEEEEEECTTC
T ss_pred             cCCceEEeeeccCCcceeeEEeeccCCccEEEEEeeCCCcccccccccceeEeecccccceEEEe-cCCceeecccCccc
Confidence            11234566778899998775433   233  333343211         1111222222222222 22223333332   


Q ss_pred             cCCcEEEEeCCCCcee--EE-eeeccCCeee-eeccCCCeEE-EeeCCC--eEEEEEcCCCceeeEeccCCCCeEEEEEC
Q psy12697        341 VDKTTIIWDAASGQCE--QQ-FSFHSAPALD-VDWQSNTSFA-SCSTDQ--HIHVCKLHSDKPVKSFEGHTNEVNAIKWD  413 (602)
Q Consensus       341 ~dg~i~~wd~~~~~~~--~~-~~~~~~~~~~-~~~~~~~~~~-~~~~~~--~i~i~d~~~~~~~~~~~~~~~~i~~~~~~  413 (602)
                      .++.|...++......  .. +..+...+.. .....++.++ ....++  .|++++..+++.........+.+..+...
T Consensus       309 ~~~~L~~~~~~~~~~~~w~~vi~~~~~~~~~~~~~~~~~~lvl~~~~~~~~~l~v~~~~~~~~~~~~~~~~~sv~~~~~~  388 (430)
T d1qfma1         309 PNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQ  388 (430)
T ss_dssp             TTCEEEEEETTBCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCCEEEEECCCSSEEEEEECC
T ss_pred             ccceeEEecCCCCccccceEEecccCcceeeeEEEEECCEEEEEEEcCCEeEEEEEECCCCcEEEecCCCCceEeeccCC
Confidence            2356666666554321  22 2223333332 2222334444 444554  58889998887665555555566666655


Q ss_pred             CCCCEEEEEEC----CCeEEEEeCCCCe
Q psy12697        414 PQGLLLASCSD----DMTLKIWSLDKDN  437 (602)
Q Consensus       414 ~~~~~l~~~~~----dg~i~iwd~~~~~  437 (602)
                      ++...+...-.    -.++.-+|+.+++
T Consensus       389 ~~~~~~~~~~ss~~tP~~~y~~Dl~t~~  416 (430)
T d1qfma1         389 KKDTEIFYQFTSFLSPGIIYHCDLTKEE  416 (430)
T ss_dssp             TTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred             CCCCEEEEEEcCCCCCCeEEEEECCCCC
Confidence            65554433322    3678888888764

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.39  E-value=0.67  Score=41.29  Aligned_cols=154  Identities=8%  Similarity=0.067  Sum_probs=92.3

Q ss_pred             CeEEEEECCCCCEEEEEECCCeEEEEeCCCCeeeEeeccccccEEEEEECCCCCCCCCCCcceeeeeeeccCCccCCeEE
Q psy12697        406 EVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFA  485 (602)
Q Consensus       406 ~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  485 (602)
                      ..+-+++++...+++.|+.++ ++|..+..-+.  .+......-   .+                ....    .-..|..
T Consensus        38 ~~~LLAVsn~~GLl~aa~~~~-l~V~~t~~l~~--~~~~~~~~~---~~----------------~~~~----~ip~v~~   91 (381)
T d1xipa_          38 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRD--HITSDSTPL---TF----------------KWEK----EIPDVIF   91 (381)
T ss_dssp             CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHH--HHHSSSCCC---CC----------------SEEE----ECTTEEE
T ss_pred             ccceEEEeCCCCEEEEECCCE-EEEEEHHHHHH--HhhccCCCC---cc----------------eecc----CCCCeEE
Confidence            456788888888888888875 66765432110  000000000   00                0000    1125777


Q ss_pred             EEEccCCCEEEEEeCCCeEEEEeCCCCceeeeecccCCCeeEeeecCCceEEEeeCCCcEEEeecCCCCceeeeeccccc
Q psy12697        486 LKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEGHTTG  565 (602)
Q Consensus       486 i~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~  565 (602)
                      ++|+.|  .|+.. .++.+..++...-........-..++..+.+.|. .++....++.+.++++..++......+.   
T Consensus        92 vafs~d--~l~v~-~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~p~-~~~l~~~~~~~~~~~l~~~~~~~~~~~v---  164 (381)
T d1xipa_          92 VCFHGD--QVLVS-TRNALYSLDLEELSEFRTVTSFEKPVFQLKNVNN-TLVILNSVNDLSALDLRTKSTKQLAQNV---  164 (381)
T ss_dssp             EEEETT--EEEEE-ESSEEEEEESSSTTCEEEEEECSSCEEEEEECSS-EEEEEETTSEEEEEETTTCCEEEEEESE---
T ss_pred             EEeeCC--EEEEE-eCCCEEEEEeeccccccccccccccccceecCCc-eeEEEecCCCEEEEEeccCccccccCCc---
Confidence            888755  34444 4566888887765544444444567888888887 4566777899999999887543222111   


Q ss_pred             ceEEEEecCCcEEEEEECCCCCeEEEeccC
Q psy12697        566 QLVHSYKGTGGIFEVCWNSRGDKVGASASD  595 (602)
Q Consensus       566 ~~~~~~~~~~~i~~l~~spdg~~l~~~~~d  595 (602)
                         ..+.-.+.+.+++|++.|+.++++..+
T Consensus       165 ---~~~~~~~~~~~v~ws~kgkq~v~~~g~  191 (381)
T d1xipa_         165 ---TSFDVTNSQLAVLLKDRSFQSFAWRNG  191 (381)
T ss_dssp             ---EEEEECSSEEEEEETTSCEEEEEEETT
T ss_pred             ---ceEEecCCceEEEEeCCcEEEEEeCCC
Confidence               122224679999999999999887443

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.93  E-value=1.2  Score=39.66  Aligned_cols=181  Identities=10%  Similarity=0.037  Sum_probs=103.5

Q ss_pred             CeEEEEEccCCCEEEEEecCCcEEEEeCCC---------CceeEEeeeccCCeeeeeccCCCeEEEeeCCCeEEEEEcCC
Q psy12697        323 PIFALKWNKRGNYILSAGVDKTTIIWDAAS---------GQCEQQFSFHSAPALDVDWQSNTSFASCSTDQHIHVCKLHS  393 (602)
Q Consensus       323 ~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~  393 (602)
                      ...-++.++...++++|+.++ +++..+..         ..........-..+..++++.+. + +...++.+..++...
T Consensus        38 ~~~LLAVsn~~GLl~aa~~~~-l~V~~t~~l~~~~~~~~~~~~~~~~~~ip~v~~vafs~d~-l-~v~~~~~l~~~~~~~  114 (381)
T d1xipa_          38 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKEIPDVIFVCFHGDQ-V-LVSTRNALYSLDLEE  114 (381)
T ss_dssp             CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEECTTEEEEEEETTE-E-EEEESSEEEEEESSS
T ss_pred             ccceEEEeCCCCEEEEECCCE-EEEEEHHHHHHHhhccCCCCcceeccCCCCeEEEEeeCCE-E-EEEeCCCEEEEEeec
Confidence            345667777666777777664 55554211         10011111122357777776554 3 334566788888776


Q ss_pred             CceeeEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeeeEeeccccccEEEEEECCCCCCCCCCCcceeeeee
Q psy12697        394 DKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILK  473 (602)
Q Consensus       394 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~  473 (602)
                      -........-..++..+.++|.  .++....+|.+.++++.+++....    ...+.++.|+                  
T Consensus       115 l~~~~~~~~~~~~~~~~~~~p~--~~~l~~~~~~~~~~~l~~~~~~~~----~~~v~~~~~~------------------  170 (381)
T d1xipa_         115 LSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQL----AQNVTSFDVT------------------  170 (381)
T ss_dssp             TTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEEE----EESEEEEEEC------------------
T ss_pred             cccccccccccccccceecCCc--eeEEEecCCCEEEEEeccCccccc----cCCcceEEec------------------
Confidence            5544444444566888888775  567777889999999988754322    2244555553                  


Q ss_pred             eccCCccCCeEEEEEccCCCEEEEEeCCCeEEEE-eCCCCceeeeecccCCCeeEeeecCCc-eEEE
Q psy12697        474 STLGQHKGPIFALKWNKRGNYILSAGVDKTTIIW-DAASGQCEQQFSFHSAPALDVDWQSNT-SFAS  538 (602)
Q Consensus       474 ~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iw-d~~~~~~~~~~~~~~~~v~~~~~s~~~-~l~~  538 (602)
                             +.+.+++|++.|+.++++..++ ..+- ++.....+.........|.++.|-.+. ++++
T Consensus       171 -------~~~~~v~ws~kgkq~v~~~g~~-~q~k~~i~~~~~~~~p~~~~~~v~sI~WL~~~~F~vv  229 (381)
T d1xipa_         171 -------NSQLAVLLKDRSFQSFAWRNGE-MEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAV  229 (381)
T ss_dssp             -------SSEEEEEETTSCEEEEEEETTE-EEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEE
T ss_pred             -------CCceEEEEeCCcEEEEEeCCCc-eeeccCCCCccccCCCcCCCcceeEEEEecCceEEEE
Confidence                   3578899999999998874332 2221 222111111111133468889998776 4443

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=94.71  E-value=1.3  Score=38.99  Aligned_cols=127  Identities=9%  Similarity=0.085  Sum_probs=69.8

Q ss_pred             CCCcEEEEeCCCCCCCCCccceEEEEEEecCCCcccCCCCceeEEeeCCCCCeEEEEe-----------------CCCeE
Q psy12697        242 GDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFLATGS-----------------YDGYA  304 (602)
Q Consensus       242 ~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-----------------~dg~i  304 (602)
                      ...+|.+|++.....      ......+..     .+.....+.+++..++.++++-.                 ..+.+
T Consensus       122 ~~~~ieif~~~~~~~------~l~~~~~v~-----~~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v  190 (340)
T d1v04a_         122 SSSTVEVFKFQEEEK------SLLHLKTIR-----HKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFV  190 (340)
T ss_dssp             TCCEEEEEEEETTTT------EEEEEEEEC-----CTTCSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCCCEEE
T ss_pred             CCceeEEEEEeCCCC------eEEEEeecC-----CccccCccceEEecCCCEEEecCccCcChhhhhhhHhhcCCceeE
Confidence            456788888765432      111111111     12234578888888888777721                 12334


Q ss_pred             EEEcCCCcceeecccccCCeEEEEEccCCCEEEEE-ecCCcEEEEeCCCCceeEEee--eccCCeeeeeccC-CCeEEEe
Q psy12697        305 RIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSA-GVDKTTIIWDAASGQCEQQFS--FHSAPALDVDWQS-NTSFASC  380 (602)
Q Consensus       305 ~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~~wd~~~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~~  380 (602)
                      ..|+.  +........-...+.++++|++++|+.+ +..+.|+.|++..........  .-....-.+.+.+ ++.+.++
T Consensus       191 ~~~~~--~~~~~~~~~l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~~~l~~~~~~~l~~~pDNi~~d~~~g~lwva  268 (340)
T d1v04a_         191 TYYSP--NDVRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTGDLWVG  268 (340)
T ss_dssp             EEECS--SCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSEEEEEEECTTTCCEEEE
T ss_pred             EEEcC--CceEEEcCCCCccceeEECCCCCEEEEEeCCCCeEEEEEeCCCcccceEEEecCCCCCCccEEecCCCEEEEE
Confidence            44443  3334444445668899999999887655 457789998887543322211  1223344455543 4444444


Q ss_pred             e
Q psy12697        381 S  381 (602)
Q Consensus       381 ~  381 (602)
                      .
T Consensus       269 ~  269 (340)
T d1v04a_         269 C  269 (340)
T ss_dssp             E
T ss_pred             E
Confidence            3

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=94.69  E-value=2  Score=41.13  Aligned_cols=69  Identities=7%  Similarity=0.054  Sum_probs=41.3

Q ss_pred             CCEEEEEecCCcEEEEeCCCCceeEEeeeccCCee-e-----eeccC---CCeEEEe-------eCCCeEEEEEcCCCce
Q psy12697        333 GNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPAL-D-----VDWQS---NTSFASC-------STDQHIHVCKLHSDKP  396 (602)
Q Consensus       333 ~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~-~-----~~~~~---~~~~~~~-------~~~~~i~i~d~~~~~~  396 (602)
                      +..++.++.++.+.-.|..+++.+........... .     ....+   ...++..       ...+.|.-+|.++++.
T Consensus       117 ~~~i~~~t~~~~l~alda~tG~~~W~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~i~g~~~~~~~~~g~v~a~d~~tG~~  196 (582)
T d1flga_         117 GDKVFFGTLDASVVALNKNTGKVVWKKKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEE  196 (582)
T ss_dssp             TTEEEEEETTTEEEEEESSSCCEEEEEECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCE
T ss_pred             CCceEEecCCCeEEEecccccceeeeecccCCCccceeecCceEecCCcEeEEEEEeCccccccccccceEEecCCCCcE
Confidence            35678888999999999999988765543211100 0     00111   1222222       2346788899998887


Q ss_pred             eeEec
Q psy12697        397 VKSFE  401 (602)
Q Consensus       397 ~~~~~  401 (602)
                      +-++.
T Consensus       197 ~W~~~  201 (582)
T d1flga_         197 IWMRP  201 (582)
T ss_dssp             EEEEE
T ss_pred             EEEEe
Confidence            76553

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=94.43  E-value=1.5  Score=38.52  Aligned_cols=196  Identities=11%  Similarity=0.168  Sum_probs=110.4

Q ss_pred             cCCCEEEEEecCCcEEEEeCCCCceeEEeeeccCCeeeeecc------CCC-eEEEeeC--C--CeEEEEEcCC-Cceee
Q psy12697        331 KRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQ------SNT-SFASCST--D--QHIHVCKLHS-DKPVK  398 (602)
Q Consensus       331 ~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~------~~~-~~~~~~~--~--~~i~i~d~~~-~~~~~  398 (602)
                      |+..+++.....+-+.+||+. |+.+..+..  +.+..+...      ... .+++++.  +  ..|.+|.+.. ...+.
T Consensus        38 p~~SlI~gTdK~~Gl~vYdL~-G~~l~~~~~--Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~~l~  114 (353)
T d1h6la_          38 PQNSKLITTNKKSGLAVYSLE-GKMLHSYHT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQ  114 (353)
T ss_dssp             GGGCEEEEEETTSCCEEEETT-CCEEEECCS--SCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTTEEE
T ss_pred             cCccEEEEEcCcCCEEEEcCC-CcEEEeccc--CCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCcccccc
Confidence            455677777777779999985 777766543  333333322      122 2445542  2  3677777753 22333


Q ss_pred             EeccC-------CCCeEEEEE--CCC-CC-EEEEEECCCeEEEEeCCC---CeeeEeeccccccEEEEEECCCCCCCCCC
Q psy12697        399 SFEGH-------TNEVNAIKW--DPQ-GL-LLASCSDDMTLKIWSLDK---DNCVHDLQAHNKEIYTIKWSPTGPETSNP  464 (602)
Q Consensus       399 ~~~~~-------~~~i~~~~~--~~~-~~-~l~~~~~dg~i~iwd~~~---~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  464 (602)
                      .+...       ...+..+|+  +|. |. ++++...+|.+..|.+..   +.....      .+..+.           
T Consensus       115 ~~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~------lvr~f~-----------  177 (353)
T d1h6la_         115 SITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGK------KVRAFK-----------  177 (353)
T ss_dssp             ECSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEE------EEEEEE-----------
T ss_pred             cccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeE------eeeccC-----------
Confidence            33221       124667776  664 44 466677789998887632   211111      111111           


Q ss_pred             CcceeeeeeeccCCccCCeEEEEEccCCCEEEEEeCCCeEEEEeCCC-----Cceeeeecc--cCCCeeEeee--cC--C
Q psy12697        465 NMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAAS-----GQCEQQFSF--HSAPALDVDW--QS--N  533 (602)
Q Consensus       465 ~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~~~-----~~~~~~~~~--~~~~v~~~~~--s~--~  533 (602)
                                    -...+..+.+.+....|..+-++..|..++++-     +..+....+  ....+-.++.  .+  +
T Consensus       178 --------------~~~q~EGCVvDde~~~LyisEE~~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~  243 (353)
T d1h6la_         178 --------------MNSQTEGMAADDEYGSLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGK  243 (353)
T ss_dssp             --------------CSSCEEEEEEETTTTEEEEEETTTEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGC
T ss_pred             --------------CCCccceEEEeCCCCcEEEecCccceEEEEeccCCCccceeeecccCccccCCccccEEEEcCCCC
Confidence                          123567888888888899988887776666542     122222221  2345666654  22  3


Q ss_pred             c-eEEEeeCCCcEEEeecCCC-Cceeeee
Q psy12697        534 T-SFASCSTDQHIHVCKLHSD-KPVKSFE  560 (602)
Q Consensus       534 ~-~l~~~~~d~~i~iw~~~~~-~~~~~~~  560 (602)
                      | .|++.-.+++..|||..+. +.+..|.
T Consensus       244 GylivSsQG~n~f~vydr~~~~~~~g~F~  272 (353)
T d1h6la_         244 GYLLASSQGNSSYAIYERQGQNKYVADFQ  272 (353)
T ss_dssp             EEEEEEEGGGTEEEEEESSTTCCEEEEEE
T ss_pred             eEEEEEcCCCCeEEEEecCCCccccceEE
Confidence            4 5666667889999998764 5555554

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=93.03  E-value=3.3  Score=37.93  Aligned_cols=35  Identities=9%  Similarity=0.153  Sum_probs=29.0

Q ss_pred             CceEEEEECCCCCeEEEeeCCceEEEEecCCceeE
Q psy12697        141 EPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLV  175 (602)
Q Consensus       141 ~~V~~~~~s~d~~~l~s~~~d~~v~iwd~~~~~~~  175 (602)
                      ...++|+|.|||++|++--..|.|++++..+++..
T Consensus        27 ~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~   61 (450)
T d1crua_          27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVK   61 (450)
T ss_dssp             SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEE
T ss_pred             CCceEEEEeCCCeEEEEEecCCEEEEEECCCCcEe
Confidence            46679999999999988766899999998877644

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=92.68  E-value=0.63  Score=42.98  Aligned_cols=53  Identities=15%  Similarity=0.226  Sum_probs=38.6

Q ss_pred             CCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeee--c------ccCCCeeEeeecCC
Q psy12697        481 GPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQF--S------FHSAPALDVDWQSN  533 (602)
Q Consensus       481 ~~v~~i~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~--~------~~~~~v~~~~~s~~  533 (602)
                      ...++|+|.|||++|++--..|.|++++..+++.....  .      .-......++|+|+
T Consensus        27 ~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pd   87 (450)
T d1crua_          27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPD   87 (450)
T ss_dssp             SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTT
T ss_pred             CCceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCC
Confidence            45679999999998888766899999998877543221  1      12346788999986

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=92.16  E-value=3.4  Score=36.06  Aligned_cols=141  Identities=13%  Similarity=0.127  Sum_probs=84.2

Q ss_pred             CCCeEEEEeCCCeEEEEcCCCcceeecccccCCeEEEEEcc------CCCEEEEEec--C--CcEEEEeCCC-CceeEEe
Q psy12697        291 NGSFLATGSYDGYARIWTSDGSLKSTLGQHKGPIFALKWNK------RGNYILSAGV--D--KTTIIWDAAS-GQCEQQF  359 (602)
Q Consensus       291 ~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~i~~~~~~~------~~~~l~~~~~--d--g~i~~wd~~~-~~~~~~~  359 (602)
                      +..+++....++-|.+||++|+.+..+.  .+.+..+..-.      ...-+++++.  +  .+|.+|.+.. ...+..+
T Consensus        39 ~~SlI~gTdK~~Gl~vYdL~G~~l~~~~--~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~~l~~~  116 (353)
T d1h6la_          39 QNSKLITTNKKSGLAVYSLEGKMLHSYH--TGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSI  116 (353)
T ss_dssp             GGCEEEEEETTSCCEEEETTCCEEEECC--SSCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTTEEEEC
T ss_pred             CccEEEEEcCcCCEEEEcCCCcEEEecc--cCCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCcccccccc
Confidence            4556666667777999999999887764  34555554332      2223444442  2  3577776642 2233333


Q ss_pred             eec-------cCCeeeeec--cCC-C--eEEEeeCCCeEEEEEcC---CC----ceeeEeccCCCCeEEEEECCCCCEEE
Q psy12697        360 SFH-------SAPALDVDW--QSN-T--SFASCSTDQHIHVCKLH---SD----KPVKSFEGHTNEVNAIKWDPQGLLLA  420 (602)
Q Consensus       360 ~~~-------~~~~~~~~~--~~~-~--~~~~~~~~~~i~i~d~~---~~----~~~~~~~~~~~~i~~~~~~~~~~~l~  420 (602)
                      ...       ...+..++.  ++. +  .+++...+|.+..|.+.   .+    +.++.+. -...+..+.+++....|.
T Consensus       117 ~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~-~~~q~EGCVvDde~~~Ly  195 (353)
T d1h6la_         117 TDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFK-MNSQTEGMAADDEYGSLY  195 (353)
T ss_dssp             SCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEE-CSSCEEEEEEETTTTEEE
T ss_pred             cccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccC-CCCccceEEEeCCCCcEE
Confidence            221       112445554  433 3  35566678898888763   22    2344444 345788999999999999


Q ss_pred             EEECCCeEEEEeCC
Q psy12697        421 SCSDDMTLKIWSLD  434 (602)
Q Consensus       421 ~~~~dg~i~iwd~~  434 (602)
                      .+-++.-|..++..
T Consensus       196 isEE~~Giw~~~a~  209 (353)
T d1h6la_         196 IAEEDEAIWKFSAE  209 (353)
T ss_dssp             EEETTTEEEEEESS
T ss_pred             EecCccceEEEEec
Confidence            99887666555543

>d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Acylamino-acid-releasing enzyme, N-terminal donain
domain: Acylamino-acid-releasing enzyme, N-terminal donain
species: Aeropyrum pernix [TaxId: 56636]

Probab=90.00  E-value=3.6  Score=32.42  Aligned_cols=252  Identities=11%  Similarity=0.110  Sum_probs=127.1

Q ss_pred             CCCeEEEEeCCCeEEEEcCCCcceeecccccCCeEEEEEccCC--CEEEEEe------cCCcEEEEeCCCCceeEEeeec
Q psy12697        291 NGSFLATGSYDGYARIWTSDGSLKSTLGQHKGPIFALKWNKRG--NYILSAG------VDKTTIIWDAASGQCEQQFSFH  362 (602)
Q Consensus       291 ~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~l~~~~------~dg~i~~wd~~~~~~~~~~~~~  362 (602)
                      +.++++++...|.+.++-+.+.....+.  ..+|.... .|..  .++..+-      .-..+.+-++...-....+...
T Consensus        25 ~d~ll~~~~seG~vni~~l~g~~~vkLt--kePI~~~~-~Pk~~ldfi~f~RDV~kGkE~Hai~~~Nlk~~GEE~~i~sp  101 (313)
T d2hu7a1          25 GDKLLVVGFSEGSVNAYLYDGGETVKLN--REPINSVL-DPHYGVGRVILVRDVSKGAEQHALFKVNTSRPGEEQRLEAV  101 (313)
T ss_dssp             TTEEEEEEEETTEEEEEEESSSSCEECC--SSCCSEEC-EECTTBSEEEEEEECSTTSCCEEEEEEETTSTTCEEECTTS
T ss_pred             CCcEEEEEeccceEEEEEEeCCEEEEEe--cccccCcC-CCccCcceEEEEeehhcCcceeeEEEEccCCCCeeeEecCC
Confidence            4457888889999999987765554443  22332221 1211  1222111      1112333344322222222222


Q ss_pred             c-CCeeeeeccCCCeEEEeeCCCeEEEEEcCCCceee--Eecc-------CCCCeEEEE-ECCCCCEEEEEEC-CCeEEE
Q psy12697        363 S-APALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVK--SFEG-------HTNEVNAIK-WDPQGLLLASCSD-DMTLKI  430 (602)
Q Consensus       363 ~-~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~--~~~~-------~~~~i~~~~-~~~~~~~l~~~~~-dg~i~i  430 (602)
                      . -.+.++++......++|+......+|-+..++...  .+.+       ..+-|..+. +.++.+-++++.- .|.++|
T Consensus       102 k~vRI~S~~yddk~vvF~Gased~~~LYviegGklrkL~~vPpFsFVtDI~~d~I~G~g~~~g~~~sfF~adl~SG~lri  181 (313)
T d2hu7a1         102 KPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPGFGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLRV  181 (313)
T ss_dssp             CSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESSCEEEEEEETTEEEEEEEEETTEEEEEEEETTTEEEEE
T ss_pred             ceEEEEEeeecCceEEEecccCCceEEEEEeCCceeeeccCCCcceEEeccCCeEEEEeeecCCcceEEEEecccCCEEE
Confidence            2 45778888888889999999999999888876432  2221       122344443 3344445666665 788888


Q ss_pred             EeCCCCeeeEeeccccccEEE----------EEECCCCCCCCCCCcceeeeeeecc-CCccCCeEEEEEccCCCEEEEEe
Q psy12697        431 WSLDKDNCVHDLQAHNKEIYT----------IKWSPTGPETSNPNMSLIFILKSTL-GQHKGPIFALKWNKRGNYILSAG  499 (602)
Q Consensus       431 wd~~~~~~~~~~~~~~~~i~~----------~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~i~~s~~~~~l~s~~  499 (602)
                      ++...+..-.........|.+          +.+.+...     ....+......+ .-..-.|+-+-+.|++++++.+-
T Consensus       182 ~tpkeGS~~~ay~~~gnKV~sdyEt~gEsywit~D~~s~-----~yerve~P~kd~~sy~p~~I~~~~Y~Pdd~L~iiak  256 (313)
T d2hu7a1         182 FDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDG-----SVEDLELPSKDFSSYRPTAITWLGYLPDGRLAVVAR  256 (313)
T ss_dssp             ECCSSEEEEEEEECTTSCEEEEEEESSCEEEEEECTTTC-----CEEECCCSSCHHHHHCCSEEEEEEECTTSCEEEEEE
T ss_pred             ecCCCCcccceeEccCceeeeccCCCCceEEEEEecccC-----ceeeeecCcccceeecceEEEeeeeCCCCcEEEEEe
Confidence            887766544333333333311          11111100     000000000000 01234456677899999989999


Q ss_pred             CCCeEEEEeCCCCceeeeecccCCCeeEeeecCCc-eEEEeeCCCcEEEeecCCCCc
Q psy12697        500 VDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNT-SFASCSTDQHIHVCKLHSDKP  555 (602)
Q Consensus       500 ~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~-~l~~~~~d~~i~iw~~~~~~~  555 (602)
                      .||.-+++.  +|+.+..-.   +.+..+..-.+. ++.-.+-..--+|-.+.++++
T Consensus       257 rdG~s~lF~--nGk~in~p~---G~~~gat~i~~~iyfshsSL~tP~kI~~~~~~~~  308 (313)
T d2hu7a1         257 REGRSAVFI--DGERVEAPQ---GNHGRVVLWRGKLVTSHTSLSTPPRIVSLPSGEP  308 (313)
T ss_dssp             ETTEEEEEE--TTEEECCCS---SEEEEEEEETTEEEEEEEETTEEEEEEEETTCCE
T ss_pred             cCCchheee--cceEecCCC---CcccceEEECCEEEEeecccCCCceeEEcCCCCc
Confidence            999988886  466554433   333333333333 333333333344555444443

>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: RCC1/BLIP-II
family: beta-lactamase inhibitor protein-II, BLIP-II
domain: beta-lactamase inhibitor protein-II, BLIP-II
species: Streptomyces exfoliatus [TaxId: 1905]

Probab=88.49  E-value=6  Score=33.02  Aligned_cols=107  Identities=13%  Similarity=-0.005  Sum_probs=51.3

Q ss_pred             ccCCeEEEEEccCCCEEEEEecCCcEEEEeCCCCceeEEeeeccCCeeeeeccCCCeEEEeeCCCeEEEEEcCCCceeeE
Q psy12697        320 HKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKS  399 (602)
Q Consensus       320 ~~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~  399 (602)
                      ....|..++--  ..+.+... ||.|..|-....-.+-.-......+..+..-....++  -.|+.++.|.....-....
T Consensus        24 ~~~~i~~va~G--~~h~~al~-dG~v~~wG~N~~GQlG~~~~~~~~v~~v~~G~~~~~a--l~dg~v~~wG~~~~gq~~~   98 (273)
T d1jtdb_          24 AQSGVDAIAGG--YFHGLALK-GGKVLGWGANLNGQLTMPAATQSGVDAIAAGNYHSLA--LKDGEVIAWGGNEDGQTTV   98 (273)
T ss_dssp             GSSSEEEEEEC--SSEEEEEE-TTEEEEEECCTTSTTSCCGGGGSCCCEEEECSSEEEE--EETTEEEEEECCTTSTTCC
T ss_pred             CCCCcEEEEcc--CCEEEEEE-CCEEEEEeCCCCCceeeeecccccceEEecCCCceee--eeeeeeeccCCCcceeecc
Confidence            34567777653  33444444 8999999654432221111222334444332222233  3489999998654322111


Q ss_pred             eccCCCCeEEEEECCCCCEEEEEECCCeEEEEeCC
Q psy12697        400 FEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLD  434 (602)
Q Consensus       400 ~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~  434 (602)
                      .......+..++....  ..+. -.|+.+..|.-.
T Consensus        99 ~~~~~~~~~~i~~~~~--~~~~-~~dg~v~~~g~~  130 (273)
T d1jtdb_          99 PAEARSGVDAIAAGAW--ASYA-LKDGKVIAWGDD  130 (273)
T ss_dssp             CGGGGSSCCEEEEETT--EEEE-EETTEEEEEECC
T ss_pred             ccccccceeEEeeecc--cccc-cccccceecccC
Confidence            1111223444443322  2222 247888888644

>d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Acylamino-acid-releasing enzyme, N-terminal donain
domain: Acylamino-acid-releasing enzyme, N-terminal donain
species: Aeropyrum pernix [TaxId: 56636]

Probab=87.92  E-value=5.1  Score=31.53  Aligned_cols=104  Identities=6%  Similarity=-0.018  Sum_probs=58.4

Q ss_pred             CCCEEEEEecCCcEEEEeCCCCceeEEeeeccCCeeeeeccCC--CeEE-E-----eeCCCeEEEEEcCCCceeeEeccC
Q psy12697        332 RGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSN--TSFA-S-----CSTDQHIHVCKLHSDKPVKSFEGH  403 (602)
Q Consensus       332 ~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~-----~~~~~~i~i~d~~~~~~~~~~~~~  403 (602)
                      +.+.++.+...|.+.++-+..++.++.-   ..++........  +.+. +     |-+-..|++.++.....-..+...
T Consensus        25 ~d~ll~~~~seG~vni~~l~g~~~vkLt---kePI~~~~~Pk~~ldfi~f~RDV~kGkE~Hai~~~Nlk~~GEE~~i~sp  101 (313)
T d2hu7a1          25 GDKLLVVGFSEGSVNAYLYDGGETVKLN---REPINSVLDPHYGVGRVILVRDVSKGAEQHALFKVNTSRPGEEQRLEAV  101 (313)
T ss_dssp             TTEEEEEEEETTEEEEEEESSSSCEECC---SSCCSEECEECTTBSEEEEEEECSTTSCCEEEEEEETTSTTCEEECTTS
T ss_pred             CCcEEEEEeccceEEEEEEeCCEEEEEe---cccccCcCCCccCcceEEEEeehhcCcceeeEEEEccCCCCeeeEecCC
Confidence            4457778888999998877776654422   222222211111  1111 1     112234566666532223333333


Q ss_pred             C-CCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeee
Q psy12697        404 T-NEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCV  439 (602)
Q Consensus       404 ~-~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~  439 (602)
                      . -.|.+++.. +.+..++|+......+|-++.++..
T Consensus       102 k~vRI~S~~yd-dk~vvF~Gased~~~LYviegGklr  137 (313)
T d2hu7a1         102 KPMRILSGVDT-GEAVVFTGATEDRVALYALDGGGLR  137 (313)
T ss_dssp             CSBEEEEEEEC-SSCEEEEEECSSCEEEEEEETTEEE
T ss_pred             ceEEEEEeeec-CceEEEecccCCceEEEEEeCCcee
Confidence            3 457777775 5567888888888889988877543

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.31  E-value=8.2  Score=32.19  Aligned_cols=103  Identities=12%  Similarity=0.090  Sum_probs=49.0

Q ss_pred             CCEEEEEecC-----CcEEEEeCCCCceeEEeeecc-CCeeeeeccCCCeEEEeeCC-----CeEEEEEcCCCceeeEec
Q psy12697        333 GNYILSAGVD-----KTTIIWDAASGQCEQQFSFHS-APALDVDWQSNTSFASCSTD-----QHIHVCKLHSDKPVKSFE  401 (602)
Q Consensus       333 ~~~l~~~~~d-----g~i~~wd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-----~~i~i~d~~~~~~~~~~~  401 (602)
                      +..++.++.+     ..+..||..+.+....-.... ..........+..++.++.+     .....+|..+.+....-.
T Consensus       149 ~~~~~~GG~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~GG~~~~~~~~~~~~~~~~~~~~~~~~~  228 (288)
T d1zgka1         149 RLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETETWTFVAP  228 (288)
T ss_dssp             TEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTEEEECCC
T ss_pred             ecceEecCcccccccceEEEeeccccccccccccccccccccccceeeeEEEecCccccccccceeeeeecceeeecccC
Confidence            3445555443     356777777654332211111 11122333344455555443     346677776654332211


Q ss_pred             cCCCCeE-EEEECCCCCEEEEEECCC-----eEEEEeCCCC
Q psy12697        402 GHTNEVN-AIKWDPQGLLLASCSDDM-----TLKIWSLDKD  436 (602)
Q Consensus       402 ~~~~~i~-~~~~~~~~~~l~~~~~dg-----~i~iwd~~~~  436 (602)
                      ....... +++. .++++++.|+.++     .|.+||+.+.
T Consensus       229 ~p~~r~~~~~~~-~~~~l~v~GG~~~~~~~~~v~~yd~~~~  268 (288)
T d1zgka1         229 MKHRRSALGITV-HQGRIYVLGGYDGHTFLDSVECYDPDTD  268 (288)
T ss_dssp             CSSCCBSCEEEE-ETTEEEEECCBCSSCBCCEEEEEETTTT
T ss_pred             ccCcccceEEEE-ECCEEEEEecCCCCeecceEEEEECCCC
Confidence            1111111 2222 2677888877543     3778888764

>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: RCC1/BLIP-II
family: beta-lactamase inhibitor protein-II, BLIP-II
domain: beta-lactamase inhibitor protein-II, BLIP-II
species: Streptomyces exfoliatus [TaxId: 1905]

Probab=85.36  E-value=9  Score=31.84  Aligned_cols=142  Identities=12%  Similarity=0.055  Sum_probs=64.3

Q ss_pred             CceeEEeeCCCCCeEEEEeCCCeEEEEcCC--CcceeecccccCCeEEEEEccCCCEEEEEecCCcEEEEeCCCCceeEE
Q psy12697        281 KDVTSLDWNNNGSFLATGSYDGYARIWTSD--GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQ  358 (602)
Q Consensus       281 ~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~--~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~  358 (602)
                      ..|..++-..  ...++.. ||.|..|-.+  +++-. -......|..+.--  ..+.+.- .|+.+..|.....-....
T Consensus        26 ~~i~~va~G~--~h~~al~-dG~v~~wG~N~~GQlG~-~~~~~~~v~~v~~G--~~~~~al-~dg~v~~wG~~~~gq~~~   98 (273)
T d1jtdb_          26 SGVDAIAGGY--FHGLALK-GGKVLGWGANLNGQLTM-PAATQSGVDAIAAG--NYHSLAL-KDGEVIAWGGNEDGQTTV   98 (273)
T ss_dssp             SSEEEEEECS--SEEEEEE-TTEEEEEECCTTSTTSC-CGGGGSCCCEEEEC--SSEEEEE-ETTEEEEEECCTTSTTCC
T ss_pred             CCcEEEEccC--CEEEEEE-CCEEEEEeCCCCCceee-eecccccceEEecC--CCceeee-eeeeeeccCCCcceeecc
Confidence            4567776532  2333334 8999999644  22211 11223345555432  2233333 489999997543211111


Q ss_pred             eeeccCCeeeeeccCCCeEEEeeCCCeEEEEEcCCCceeeEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEeCC
Q psy12697        359 FSFHSAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLD  434 (602)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~  434 (602)
                      .......+..+.......+  ...|+.+..|.................|..++-.  ...++ ...++.+..|-..
T Consensus        99 ~~~~~~~~~~i~~~~~~~~--~~~dg~v~~~g~~~~~~~~~~~~~~~~v~~~~~~--~~~~~-~~~~g~~~~~G~~  169 (273)
T d1jtdb_          99 PAEARSGVDAIAAGAWASY--ALKDGKVIAWGDDSDGQTTVPAEAQSGVTALDGG--VYTAL-AVKNGGVIAWGDN  169 (273)
T ss_dssp             CGGGGSSCCEEEEETTEEE--EEETTEEEEEECCTTSTTSCCGGGGSSEEEEEEC--SSEEE-EEETTEEEEEECC
T ss_pred             ccccccceeEEeeeccccc--ccccccceecccCCCCceeeeccCCceEEEEecc--ceeee-eecccceeEeecc
Confidence            1111122222222222222  2347888888755432222212222345544432  22233 3346788888654