Psyllid ID: psy12804

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180--
Protein Sequence
MVEQTMTAEQSTAVESVVEEVRDEYLGPAASGLYDPANEREACGVGFIVAIDRKRSHKSAGIGEVARNSEPFMRQVFLTGKQDEEEFKRQIYVLRKVSTHKIPKPGQRFYICSLSNRIVVYKGQFTADQLWKYFTDLNIIEDAEKLSMRMNHRGACACDNDSGDGAGVLVAIPHAFYIQKLR
Secondary Structure (PSIPRED)
cccccHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHcccEEEEEEccccccccccHHHHHccccEEEEEEEccccHHHHHHHHHHHHHHHHHccccccccEEEcccccccEEEcccccHHcHHHHHccccccccHHHHccEEEEcccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccEEcccccccccHHEEcccccHHHHHHHHHHHHHHHHHHHHcccEEEEEEcccccccccccHHHHcccccEEEEEEcccccHHHHHHHHHHHHHHHHHHHHHccccEEEEEEcccEEEEcccccHHHHHHHcHHcccccHHHHHHHHHHcccccccccccccccEEEEEccHHHHHHHcc
Coil and Loop (DISEMBL)
MVEQTMTAEQSTAVESVVEEVRdeylgpaasglydpanereacgVGFIVAIDrkrshksagigevarnsepFMRQVFLTGKQDEEEFKRQIYVLRKvsthkipkpgqrfyicSLSNRIVVYKGQFTADQLWKYFTDLNIIEDAEKLSMRMnhrgacacdndsgdgagVLVAIPHAFYIQKLR
Flexible Loop (DISEMBL)
mveqtmtaeqstavESVVEEVRDEYLGPaasglydpaneREACGVGFIVAIDRKRSHKsagigevarnsepfMRQVFLtgkqdeeefkRQIYVLrkvsthkipkpgqrFYICSLSNRIVVYKGQFTADQLWKYFTDLNIIEDAEKLSMRMNHRGACACDNDSGDGAGVLVAIPHAFYIQKLR
Low Complexity Region (SEG)
MVEQTMTAEQSTAVESVVEEVRDEYLGPAASGLYDPANEREACGVGFIVAIDRKRSHKSAGIGEVARNSEPFMRQVFLTGKQDEEEFKRQIYVLRKVSTHKIPKPGQRFYICSLSNRIVVYKGQFTADQLWKYFTDLNIIEDAEKLSMRMNHRGACACDNDSGDGAGVLVAIPHAFYIQKLR
Disordered region (IsUnstruct)
************************YLGPAASGLYDPANEREACGVGFIVAIDR******************FMRQVFLTGKQDEEEFKRQIYVLRKVSTHKIPKPGQRFYICSLSNRIVVYKGQFTADQLWKYFTDLNIIEDAEKLSMRMNHRGACACDNDSGDGAGVLVAIPHAFYIQ***
Disordered Region (DISOPRED)
***QTMTAEQSTAVESVVEE****YLGPAASGLYDPANEREACGVGFIVAIDRKRSHKSAGIGEVARNSEPFMRQVFLTGKQDEEEFKRQIYVLRKVSTHKIPKPGQRFYICSLSNRIVVYKGQFTADQLWKYFTDLNIIEDAEKLSMRMNHRGACACDNDSGDGAGVLVAIPHAFYIQKLR
Disordered Region (DISEMBL)
**************ESVVEEVRDEYLGPAASGLYDPANEREACGVGFIVAIDRKRSHKSAGIGEVARNSEPFMRQVFLTGKQDEEEFKRQIYVLRKVSTHKIPKPGQRFYICSLSNRIVVYKGQFTADQLWKYFTDLNIIEDAEKLSMRMNHRGACACDNDSGDGAGVLVAIPHAFYIQKLR
Disordered Region (DISPRO)
****TMTAEQSTAVESVVEEVRDEYLGPAASGLYDPANEREACGVGFIVAIDRKRSHKSAGIGEVARNSEPFMRQVFLTGKQDEEEFKRQIYVLRKVSTHKIPKPGQRFYICSLSNRIVVYKGQFTADQLWKYFTDLNIIEDAEKLSMRMNHRGACACDNDSGDGAGVLVAIPHAFYIQKLR
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVEQTMTAEQSTAVESVVEEVRDEYLGPAASGLYDPANEREACGVGFIVAIDRKRSHKSAGIGEVARNSEPFMRQVFLTGKQDEEEFKRQIYVLRKVSTHKIPKPGQRFYICSLSNRIVVYKGQFTADQLWKYFTDLNIIEDAEKLSMRMNHRGACACDNDSGDGAGVLVAIPHAFYIQKLR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	182	2.2.26 [Sep-21-2011]
P55037	1550	Ferredoxin-dependent glut	N/A	N/A	0.423	0.049	0.414	4e-11
Q03460	2194	Glutamate synthase [NADH]	N/A	N/A	0.417	0.034	0.416	5e-11
Q0DG35	2188	Glutamate synthase 2 [NAD	yes	N/A	0.494	0.041	0.397	7e-11
Q9LV03	2208	Glutamate synthase 1 [NAD	yes	N/A	0.417	0.034	0.416	9e-11
Q0JKD0	2167	Glutamate synthase 1 [NAD	yes	N/A	0.527	0.044	0.365	1e-10
Q9C102	2111	Putative glutamate syntha	yes	N/A	0.434	0.037	0.443	7e-10
P39812	1520	Glutamate synthase [NADPH	yes	N/A	0.417	0.05	0.405	1e-09
Q12680	2145	Glutamate synthase [NADH]	yes	N/A	0.428	0.036	0.383	4e-09
Q05755	1515	Glutamate synthase [NADPH	yes	N/A	0.412	0.049	0.375	6e-07
P96218	1527	Glutamate synthase [NADPH	yes	N/A	0.412	0.049	0.369	8e-07

>sp|P55037|GLTB_SYNY3 Ferredoxin-dependent glutamate synthase 1 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=gltB PE=1 SV=1

 Score = 67.8 bits (164), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 34/82 (41%), Positives = 54/82 (65%), Gaps = 5/82 (6%)

Query: 62  IGEVARNSEPFMRQVFLT---GKQDEEEFKRQIYVLRKVSTHKI--PKPGQRFYICSLSN 116
           +GE A  SEPFM+QV++    G  D+ +F+R++YV+RK++   I  PK    +Y+ SLS 
Sbjct: 159 LGETAIASEPFMQQVYIARPEGLTDDLDFERKLYVIRKLTHGAIRSPKIDTYWYVASLSA 218

Query: 117 RIVVYKGQFTADQLWKYFTDLN 138
           R +VYKG  T  Q+ +Y+ +L+
Sbjct: 219 RTLVYKGMLTTAQVGQYYPELH 240

Synechocystis sp. (strain PCC 6803 / Kazusa) (taxid: 1111708)
EC: 1EC: .EC: 4EC: .EC: 7EC: .EC: 1

>sp|Q03460|GLSN_MEDSA Glutamate synthase [NADH], amyloplastic OS=Medicago sativa PE=1 SV=1

 Score = 67.4 bits (163), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 35/84 (41%), Positives = 52/84 (61%), Gaps = 8/84 (9%)

Query: 59  SAGIGEVARNSEPFMRQVFLTGKQDEE-EFKRQIYVLRKVSTHKIPKPGQ-------RFY 110
           + G+G+ A+ +EP + QVFLT   D + + ++Q+Y+LRK+S   I             FY
Sbjct: 212 NTGLGKSAQLTEPVIEQVFLTPSSDSKVDLEKQMYILRKLSMVSITSALNLQSDGITDFY 271

Query: 111 ICSLSNRIVVYKGQFTADQLWKYF 134
           ICSLS+R V+YKGQ T  QL +Y+
Sbjct: 272 ICSLSSRTVIYKGQLTPAQLGEYY 295

Medicago sativa (taxid: 3879)

EC: 1

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 1

EC: 4

>sp|Q0DG35|GLT2_ORYSJ Glutamate synthase 2 [NADH], chloroplastic OS=Oryza sativa subsp. japonica GN=Os05g0555600 PE=2 SV=2

 Score = 67.0 bits (162), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 39/98 (39%), Positives = 58/98 (59%), Gaps = 8/98 (8%)

Query: 45  VGFIVAIDRKRSHKSAGIGEVARNSEPFMRQVFLT-GKQDEEEFKRQIYVLRKVSTHKI- 102
           +G  V   R+    ++G+G+ A ++EP + QVF+T     + +F+RQ+YVLR+ S   I 
Sbjct: 206 LGHTVLGWRRVPTDNSGLGQSAVDTEPVIEQVFVTKSASSKADFERQMYVLRRFSVMSIR 265

Query: 103 ----PKPG--QRFYICSLSNRIVVYKGQFTADQLWKYF 134
                K G  + FY+CSLS+R +VYKGQ    QL  YF
Sbjct: 266 EVLGVKNGGTKDFYMCSLSSRTIVYKGQLKPSQLKGYF 303

Involved in glutamate biosynthesis.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 1

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 1

EC: 4

>sp|Q9LV03|GLUT1_ARATH Glutamate synthase 1 [NADH], chloroplastic OS=Arabidopsis thaliana GN=GLT1 PE=1 SV=2

 Score = 66.6 bits (161), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 35/84 (41%), Positives = 52/84 (61%), Gaps = 8/84 (9%)

Query: 59  SAGIGEVARNSEPFMRQVFLT-GKQDEEEFKRQIYVLRKVSTHKIPKP-------GQRFY 110
           ++G+G  A  +EP + QVFLT   + + +F++Q+Y+LR+VS   I           + FY
Sbjct: 230 NSGLGNSALQTEPIIAQVFLTPTTKSKADFEQQMYILRRVSMVAIRAALNLQHGAMKDFY 289

Query: 111 ICSLSNRIVVYKGQFTADQLWKYF 134
           ICSLS+R +VYKGQ   DQL  Y+
Sbjct: 290 ICSLSSRTIVYKGQLKPDQLKDYY 313

Involved in glutamate biosynthesis. Required for non-photorespiratory ammonium assimilation. Probably involved in primary ammonium assimilation in roots.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 1

EC: 4

>sp|Q0JKD0|GLT1_ORYSJ Glutamate synthase 1 [NADH], chloroplastic OS=Oryza sativa subsp. japonica GN=Os01g0681900 PE=2 SV=1

 Score = 66.2 bits (160), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 38/104 (36%), Positives = 62/104 (59%), Gaps = 8/104 (7%)

Query: 39  EREACGVGFIVAIDRKRSHKSAGIGEVARNSEPFMRQVFLT-GKQDEEEFKRQIYVLRKV 97
           ++ A  +G ++   R+    ++ +GE A  +EP + QVFLT     E +F++Q+Y+LR++
Sbjct: 193 QKVAESLGHVILGWRRVPTDNSDLGESALQTEPVIEQVFLTKSSSSEADFEQQLYILRRL 252

Query: 98  STHKIP------KPGQR-FYICSLSNRIVVYKGQFTADQLWKYF 134
           S   I       + G+R FY+CSLS+R +VYKGQ    QL  Y+
Sbjct: 253 SILSIRAALNLRRGGKRDFYMCSLSSRTIVYKGQLKPCQLKGYY 296

Involved in glutamate biosynthesis and plays a major role in the primary ammonium ions assimilation in seedling roots. May be involved in the reutilization of glutamine in developing organs. Plays a role in the development of tillers.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 1

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 1

EC: 4

>sp|Q9C102|GLT1_SCHPO Putative glutamate synthase [NADPH] OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=glt1 PE=2 SV=1

 Score = 63.5 bits (153), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 39/88 (44%), Positives = 49/88 (55%), Gaps = 9/88 (10%)

Query: 62  IGEVARNSEPFMRQ--VFLTGKQDEEE------FKRQIYVLRKVSTHKIPKPGQRFYICS 113
           +G  A + EP + Q  V L    D E       F+RQ+YVLRK S+H I K  + FYICS
Sbjct: 185 LGPAALSREPTILQPCVVLKAAYDGEAEFDTDLFERQLYVLRKQSSHLIGKE-KWFYICS 243

Query: 114 LSNRIVVYKGQFTADQLWKYFTDLNIIE 141
           L    +VYKGQ    Q++ YF DLN  E
Sbjct: 244 LHRETIVYKGQLAPVQVYNYFLDLNNAE 271

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 1

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 1

EC: 3

>sp|P39812|GLTA_BACSU Glutamate synthase [NADPH] large chain OS=Bacillus subtilis (strain 168) GN=gltA PE=2 SV=3

 Score = 62.8 bits (151), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 32/79 (40%), Positives = 51/79 (64%), Gaps = 3/79 (3%)

Query: 62  IGEVARNSEPFMRQVFLTGKQDEEE---FKRQIYVLRKVSTHKIPKPGQRFYICSLSNRI 118
           IG VA+ S PF+RQVF+    D ++   F+R++YV+RK + +     G  FY  SLS++ 
Sbjct: 136 IGTVAQKSCPFVRQVFIGASSDLKDNLSFERKLYVIRKQAENWGVTEGLDFYFASLSSQT 195

Query: 119 VVYKGQFTADQLWKYFTDL 137
           +VYKG  T +Q+  +++DL
Sbjct: 196 IVYKGLLTPEQVDAFYSDL 214

Bacillus subtilis (strain 168) (taxid: 224308)

EC: 1

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 1

EC: 3

>sp|Q12680|GLT1_YEAST Glutamate synthase [NADH] OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=GLT1 PE=1 SV=2

 Score = 61.2 bits (147), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 33/86 (38%), Positives = 51/86 (59%), Gaps = 8/86 (9%)

Query: 59  SAGIGEVARNSEPFMRQVFLTGKQDEEE-------FKRQIYVLRKVSTHKIPKPGQRFYI 111
           S  +G+VA + EP + Q  L    DE++       F+ Q+Y+LRK ++ +I      FY+
Sbjct: 171 STILGDVALSREPTILQPLLVPLYDEKQPEFNETKFRTQLYLLRKEASLQIGLENW-FYV 229

Query: 112 CSLSNRIVVYKGQFTADQLWKYFTDL 137
           CSL+N  +VYKGQ T  Q++ Y+ DL
Sbjct: 230 CSLNNTTIVYKGQLTPAQVYNYYPDL 255

Forms L-glutamate from L-glutamine and 2-oxoglutarate. Represents an alternative pathway to L-glutamate dehydrogenase for the biosynthesis of L-glutamate. Participates with glutamine synthetase in ammonia assimilation processes. The enzyme is specific for NADH, L-glutamine and 2-oxoglutarate.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

EC: 1

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 1

EC: 4

>sp|Q05755|GLTB_AZOBR Glutamate synthase [NADPH] large chain OS=Azospirillum brasilense GN=gltB PE=1 SV=1

 Score = 53.5 bits (127), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 30/80 (37%), Positives = 47/80 (58%), Gaps = 5/80 (6%)

Query: 62  IGEVARNSEPFMRQVFLTGKQ--DEEEFKRQIYVLRKVSTHKIPKPGQ--RFYICSLSNR 117
           IGE A  + P + Q+ +   +   +E+F+  +Y++R+    K  K  Q   FYICSLS R
Sbjct: 153 IGEKANATRPEIEQIIVGNNKGVSDEQFELDLYIIRR-RIEKAVKGEQINDFYICSLSAR 211

Query: 118 IVVYKGQFTADQLWKYFTDL 137
            ++YKG F A+QL  ++ DL
Sbjct: 212 SIIYKGMFLAEQLTTFYPDL 231

Azospirillum brasilense (taxid: 192)

EC: 1

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 1

EC: 3

>sp|P96218|GLTB_MYCTU Glutamate synthase [NADPH] large chain OS=Mycobacterium tuberculosis GN=gltB PE=1 SV=3

 Score = 53.5 bits (127), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 31/84 (36%), Positives = 46/84 (54%), Gaps = 9/84 (10%)

Query: 62  IGEVARNSEPFMRQVFLTGKQDEEEFKRQIYVLRKVSTHKIPK--PGQ------RFYICS 113
           +G ++R++ P  RQVFL G       +R+ YV+RK + H++    PGQ        Y  S
Sbjct: 131 LGALSRDAMPTFRQVFLAGASGMA-LERRCYVVRKRAEHELGTKGPGQDGPGRETVYFPS 189

Query: 114 LSNRIVVYKGQFTADQLWKYFTDL 137
           LS + +VYKG  T  QL  ++ DL
Sbjct: 190 LSGQTLVYKGMLTTPQLKAFYLDL 213

Mycobacterium tuberculosis (taxid: 1773)

EC: 1

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 1

EC: 3

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	182
242015925	2068	ferredoxin-dependent glutamate synthase	0.472	0.041	0.662	1e-27
307210154	2138	Putative glutamate synthase [NADPH] [Har	0.417	0.035	0.697	6e-26
307187474	1987	Glutamate synthase [NADH], amyloplastic	0.434	0.039	0.696	2e-25
332030526	2061	Putative glutamate synthase [Acromyrmex	0.467	0.041	0.647	2e-25
328721168	2080	PREDICTED: putative glutamate synthase [	0.439	0.038	0.650	3e-25
322792674	2065	hypothetical protein SINV_12348 [Solenop	0.417	0.036	0.697	9e-25
350405948	2065	PREDICTED: putative glutamate synthase [	0.417	0.036	0.671	1e-24
350405946	2065	PREDICTED: putative glutamate synthase [	0.417	0.036	0.671	1e-24
340711712	2066	PREDICTED: putative glutamate synthase [	0.417	0.036	0.671	1e-24
345480329	2007	PREDICTED: putative glutamate synthase [	0.417	0.037	0.684	2e-24

>gi|242015925|ref|XP_002428593.1| ferredoxin-dependent glutamate synthase 2, putative [Pediculus humanus corporis] gi|212513237|gb|EEB15855.1| ferredoxin-dependent glutamate synthase 2, putative [Pediculus humanus corporis]

 Score =  128 bits (321), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 57/86 (66%), Positives = 67/86 (77%)

Query: 53  RKRSHKSAGIGEVARNSEPFMRQVFLTGKQDEEEFKRQIYVLRKVSTHKIPKPGQRFYIC 112
           R     ++GIGEVAR  EPFMRQVF+TG QDEE  KRQ++ LRK++TH IP+PG RFYIC
Sbjct: 135 RTVPTSNSGIGEVARACEPFMRQVFVTGNQDEELLKRQVFKLRKMATHVIPRPGARFYIC 194

Query: 113 SLSNRIVVYKGQFTADQLWKYFTDLN 138
           SLS   +VYKGQ T+DQLW YF DLN
Sbjct: 195 SLSIYTIVYKGQLTSDQLWTYFLDLN 220

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307210154|gb|EFN86827.1| Putative glutamate synthase [NADPH] [Harpegnathos saltator]

 Score =  122 bits (306), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 53/76 (69%), Positives = 63/76 (82%)

Query: 62  IGEVARNSEPFMRQVFLTGKQDEEEFKRQIYVLRKVSTHKIPKPGQRFYICSLSNRIVVY 121
           IG+VA+  EP+MRQVF+TG QD E  KRQI+VLRK S+H IP+PG R+YICSLS + +VY
Sbjct: 147 IGQVAKKCEPYMRQVFVTGDQDAETLKRQIFVLRKRSSHSIPRPGLRYYICSLSLKTIVY 206

Query: 122 KGQFTADQLWKYFTDL 137
           KGQ TADQLW YFTDL
Sbjct: 207 KGQLTADQLWLYFTDL 222

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

>gi|307187474|gb|EFN72550.1| Glutamate synthase [NADH], amyloplastic [Camponotus floridanus]

 Score =  120 bits (302), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 55/79 (69%), Positives = 63/79 (79%)

Query: 59  SAGIGEVARNSEPFMRQVFLTGKQDEEEFKRQIYVLRKVSTHKIPKPGQRFYICSLSNRI 118
           S  IG+VAR  EP+MRQVF+TG QD E  KRQI+VLRK S+H I +PG R+YICSLS + 
Sbjct: 136 STQIGQVARKCEPYMRQVFVTGDQDTETLKRQIFVLRKRSSHTIRQPGLRYYICSLSLKT 195

Query: 119 VVYKGQFTADQLWKYFTDL 137
           VVYKGQ TADQLW YFTDL
Sbjct: 196 VVYKGQLTADQLWSYFTDL 214

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

>gi|332030526|gb|EGI70214.1| Putative glutamate synthase [Acromyrmex echinatior]

 Score =  120 bits (302), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 55/85 (64%), Positives = 65/85 (76%)

Query: 53  RKRSHKSAGIGEVARNSEPFMRQVFLTGKQDEEEFKRQIYVLRKVSTHKIPKPGQRFYIC 112
           R     S+ IG+VA+  EP+MRQVF+TG QD E  KRQI+VLRK S+H IP+P  R+YIC
Sbjct: 130 RNVPTDSSQIGQVAKKCEPYMRQVFVTGDQDAETLKRQIFVLRKRSSHSIPRPELRYYIC 189

Query: 113 SLSNRIVVYKGQFTADQLWKYFTDL 137
           SLS + VVYKGQ TADQLW YFTDL
Sbjct: 190 SLSLKTVVYKGQLTADQLWLYFTDL 214

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328721168|ref|XP_001948786.2| PREDICTED: putative glutamate synthase [NADPH]-like [Acyrthosiphon pisum]

 Score =  120 bits (301), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 54/83 (65%), Positives = 69/83 (83%), Gaps = 3/83 (3%)

Query: 58  KSAGIGEVARNSEPFMRQVFLTGKQD---EEEFKRQIYVLRKVSTHKIPKPGQRFYICSL 114
           +++ IGEVAR+SEPF+RQ F+    D   E++FKR+++ LRK STH IPKPG+RFYICSL
Sbjct: 145 RNSQIGEVARSSEPFIRQAFVVDAADVFDEDDFKRRVFALRKRSTHTIPKPGRRFYICSL 204

Query: 115 SNRIVVYKGQFTADQLWKYFTDL 137
           S+ IVVYKGQFT+DQLW+YF DL
Sbjct: 205 SHTIVVYKGQFTSDQLWEYFADL 227

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

>gi|322792674|gb|EFZ16548.1| hypothetical protein SINV_12348 [Solenopsis invicta]

 Score =  118 bits (296), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 53/76 (69%), Positives = 62/76 (81%)

Query: 62  IGEVARNSEPFMRQVFLTGKQDEEEFKRQIYVLRKVSTHKIPKPGQRFYICSLSNRIVVY 121
           IG+VA+  EP+MRQVF+TG QD E  KRQI+VLRK S+H IP+P  R+YICSLS + VVY
Sbjct: 139 IGQVAKKCEPYMRQVFVTGDQDAETLKRQIFVLRKRSSHIIPRPELRYYICSLSLKTVVY 198

Query: 122 KGQFTADQLWKYFTDL 137
           KGQ TADQLW YFTDL
Sbjct: 199 KGQLTADQLWLYFTDL 214

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350405948|ref|XP_003487604.1| PREDICTED: putative glutamate synthase [NADPH]-like isoform 2 [Bombus impatiens]

 Score =  118 bits (296), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 51/76 (67%), Positives = 62/76 (81%)

Query: 62  IGEVARNSEPFMRQVFLTGKQDEEEFKRQIYVLRKVSTHKIPKPGQRFYICSLSNRIVVY 121
           IG+VAR  EP+MRQVF+TG QD+   +RQ+++LRK S+H IP+PG R+YICSLS R VVY
Sbjct: 139 IGQVARKCEPYMRQVFVTGDQDDINLERQVFILRKRSSHSIPRPGIRYYICSLSIRTVVY 198

Query: 122 KGQFTADQLWKYFTDL 137
           KGQ TADQLW YF DL
Sbjct: 199 KGQLTADQLWLYFLDL 214

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

>gi|350405946|ref|XP_003487603.1| PREDICTED: putative glutamate synthase [NADPH]-like isoform 1 [Bombus impatiens]

 Score =  118 bits (296), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 51/76 (67%), Positives = 62/76 (81%)

Query: 62  IGEVARNSEPFMRQVFLTGKQDEEEFKRQIYVLRKVSTHKIPKPGQRFYICSLSNRIVVY 121
           IG+VAR  EP+MRQVF+TG QD+   +RQ+++LRK S+H IP+PG R+YICSLS R VVY
Sbjct: 140 IGQVARKCEPYMRQVFVTGDQDDINLERQVFILRKRSSHSIPRPGIRYYICSLSIRTVVY 199

Query: 122 KGQFTADQLWKYFTDL 137
           KGQ TADQLW YF DL
Sbjct: 200 KGQLTADQLWLYFLDL 215

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

>gi|340711712|ref|XP_003394415.1| PREDICTED: putative glutamate synthase [NADPH]-like [Bombus terrestris]

 Score =  118 bits (296), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 51/76 (67%), Positives = 62/76 (81%)

Query: 62  IGEVARNSEPFMRQVFLTGKQDEEEFKRQIYVLRKVSTHKIPKPGQRFYICSLSNRIVVY 121
           IG+VAR  EP+MRQVF+TG QD+   +RQ+++LRK S+H IP+PG R+YICSLS R VVY
Sbjct: 140 IGQVARKCEPYMRQVFVTGDQDDINLERQVFILRKRSSHSIPRPGIRYYICSLSIRTVVY 199

Query: 122 KGQFTADQLWKYFTDL 137
           KGQ TADQLW YF DL
Sbjct: 200 KGQLTADQLWLYFLDL 215

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

>gi|345480329|ref|XP_001605708.2| PREDICTED: putative glutamate synthase [NADPH]-like [Nasonia vitripennis]

 Score =  117 bits (292), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 52/76 (68%), Positives = 61/76 (80%)

Query: 62  IGEVARNSEPFMRQVFLTGKQDEEEFKRQIYVLRKVSTHKIPKPGQRFYICSLSNRIVVY 121
           IG VA+  EP+MRQVF+TG Q+ E   RQ++VLRK S+H IPKPG R+YICSLS + VVY
Sbjct: 148 IGRVAKKCEPYMRQVFVTGDQEVEALNRQVFVLRKKSSHIIPKPGLRYYICSLSLKTVVY 207

Query: 122 KGQFTADQLWKYFTDL 137
           KGQ TADQLW YFTDL
Sbjct: 208 KGQLTADQLWLYFTDL 223

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	182
FB|FBgn0036663	2114	CG9674 [Drosophila melanogaste	0.609	0.052	0.504	6.7e-21
UNIPROTKB|P55037	1550	gltB "Ferredoxin-dependent glu	0.417	0.049	0.421	6.7e-19
SGD|S000002330	2145	GLT1 "NAD(+)-dependent glutama	0.412	0.034	0.385	1.6e-15
POMBASE|SPAPB1E7.07	2111	glt1 "glutamate synthase Glt1	0.434	0.037	0.443	4.7e-15
TAIR|locus:2178461	2208	GLT1 "NADH-dependent glutamate	0.434	0.035	0.431	2.2e-14
ASPGD|ASPL0000027159	2126	gltA [Emericella nidulans (tax	0.296	0.025	0.509	2.6e-14
TIGR_CMR|CPS_0761	1535	CPS_0761 "putative glutamate s	0.483	0.057	0.397	5.1e-14
WB|WBGene00012326	2175	W07E11.1 [Caenorhabditis elega	0.516	0.043	0.414	1.1e-12
UNIPROTKB|Q0JKD0	2167	LOC_Os01g48960 "Glutamate synt	0.543	0.045	0.370	1e-09
UNIPROTKB|Q9KPJ4	1530	VC_2373 "Glutamate synthase, l	0.417	0.049	0.365	1.8e-10

FB|FBgn0036663 CG9674 [Drosophila melanogaster (taxid:7227)]

 Score = 262 (97.3 bits), Expect = 6.7e-21, P = 6.7e-21
 Identities = 63/125 (50%), Positives = 85/125 (68%)

Query:    26 LGPAASGLY--DPAN----ERE----ACGVGF-IVAIDRKRSHKSAGIGEVARNSEPFMR 74
             LG  A+G++  D A     E+E    A  +G  ++A     S++SA IG VAR SEP  R
Sbjct:   156 LGDYATGIFYLDEAQHAAAEKEFDDLAKSLGLEVIAWRTVPSNQSA-IGVVARKSEPLSR 214

Query:    75 QVFLT--GKQDEEEFKRQIYVLRKVSTHKIPKPGQRFYICSLSNRIVVYKGQFTADQLWK 132
             QVF+      DE+ F+RQ++VLRK ++H++ KPG+RFYICSLS+R VVYKG FT+DQLW 
Sbjct:   215 QVFVRRPAGSDEKAFERQVFVLRKRASHELIKPGRRFYICSLSDRTVVYKGLFTSDQLWD 274

Query:   133 YFTDL 137
             Y+TDL
Sbjct:   275 YYTDL 279

GO:0004355 "glutamate synthase (NADPH) activity" evidence=ISS

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0005506 "iron ion binding" evidence=IEA

GO:0016040 "glutamate synthase (NADH) activity" evidence=IEA

GO:0010181 "FMN binding" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0006537 "glutamate biosynthetic process" evidence=IEA

GO:0051536 "iron-sulfur cluster binding" evidence=IEA

UNIPROTKB|P55037 gltB "Ferredoxin-dependent glutamate synthase 1" [Synechocystis sp. PCC 6803 substr. Kazusa (taxid:1111708)]

 Score = 158 (60.7 bits), Expect = 6.7e-19, Sum P(2) = 6.7e-19
 Identities = 35/83 (42%), Positives = 55/83 (66%)

Query:    62 IGEVARNSEPFMRQVFLT---GKQDEEEFKRQIYVLRKVSTH---KIPKPGQRFYICSLS 115
             +GE A  SEPFM+QV++    G  D+ +F+R++YV+RK+ TH   + PK    +Y+ SLS
Sbjct:   159 LGETAIASEPFMQQVYIARPEGLTDDLDFERKLYVIRKL-THGAIRSPKIDTYWYVASLS 217

Query:   116 NRIVVYKGQFTADQLWKYFTDLN 138
              R +VYKG  T  Q+ +Y+ +L+
Sbjct:   218 ARTLVYKGMLTTAQVGQYYPELH 240

GO:0005515 "protein binding" evidence=IPI

SGD|S000002330 GLT1 "NAD(+)-dependent glutamate synthase (GOGAT)" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 139 (54.0 bits), Expect = 1.6e-15, Sum P(3) = 1.6e-15
 Identities = 32/83 (38%), Positives = 50/83 (60%)

Query:    62 IGEVARNSEPFMRQVFLTGKQDEEE-------FKRQIYVLRKVSTHKIPKPGQRFYICSL 114
             +G+VA + EP + Q  L    DE++       F+ Q+Y+LRK ++ +I      FY+CSL
Sbjct:   174 LGDVALSREPTILQPLLVPLYDEKQPEFNETKFRTQLYLLRKEASLQIGLENW-FYVCSL 232

Query:   115 SNRIVVYKGQFTADQLWKYFTDL 137
             +N  +VYKGQ T  Q++ Y+ DL
Sbjct:   233 NNTTIVYKGQLTPAQVYNYYPDL 255

GO:0005739 "mitochondrion" evidence=IDA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0006541 "glutamine metabolic process" evidence=IEA

GO:0008652 "cellular amino acid biosynthetic process" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0051536 "iron-sulfur cluster binding" evidence=IEA

GO:0010181 "FMN binding" evidence=IEA

GO:0015930 "glutamate synthase activity" evidence=IEA

GO:0016639 "oxidoreductase activity, acting on the CH-NH2 group of donors, NAD or NADP as acceptor" evidence=IEA

GO:0045181 "glutamate synthase activity, NAD(P)H as acceptor" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0005506 "iron ion binding" evidence=IEA

GO:0006537 "glutamate biosynthetic process" evidence=IEA;IEP

GO:0006807 "nitrogen compound metabolic process" evidence=IEA

GO:0016040 "glutamate synthase (NADH) activity" evidence=IEA;IMP;IDA

GO:0019676 "ammonia assimilation cycle" evidence=IEP

GO:0000166 "nucleotide binding" evidence=IEA

GO:0097054 "L-glutamate biosynthetic process" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0051538 "3 iron, 4 sulfur cluster binding" evidence=IEA

GO:0016638 "oxidoreductase activity, acting on the CH-NH2 group of donors" evidence=IEA

POMBASE|SPAPB1E7.07 glt1 "glutamate synthase Glt1 (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 148 (57.2 bits), Expect = 4.7e-15, Sum P(2) = 4.7e-15
 Identities = 39/88 (44%), Positives = 49/88 (55%)

Query:    62 IGEVARNSEPFMRQ--VFLTGKQDEEE------FKRQIYVLRKVSTHKIPKPGQRFYICS 113
             +G  A + EP + Q  V L    D E       F+RQ+YVLRK S+H I K  + FYICS
Sbjct:   185 LGPAALSREPTILQPCVVLKAAYDGEAEFDTDLFERQLYVLRKQSSHLIGKE-KWFYICS 243

Query:   114 LSNRIVVYKGQFTADQLWKYFTDLNIIE 141
             L    +VYKGQ    Q++ YF DLN  E
Sbjct:   244 LHRETIVYKGQLAPVQVYNYFLDLNNAE 271

GO:0004355 "glutamate synthase (NADPH) activity" evidence=IEA

GO:0005506 "iron ion binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISO

GO:0005829 "cytosol" evidence=IDA

GO:0006537 "glutamate biosynthetic process" evidence=ISO

GO:0006541 "glutamine metabolic process" evidence=IEA

GO:0010181 "FMN binding" evidence=IEA

GO:0016040 "glutamate synthase (NADH) activity" evidence=ISO

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0051538 "3 iron, 4 sulfur cluster binding" evidence=IEA

TAIR|locus:2178461 GLT1 "NADH-dependent glutamate synthase 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 153 (58.9 bits), Expect = 2.2e-14, Sum P(2) = 2.2e-14
 Identities = 38/88 (43%), Positives = 56/88 (63%)

Query:    59 SAGIGEVARNSEPFMRQVFLTGK-QDEEEFKRQIYVLRKVSTHKIP-----KPG--QRFY 110
             ++G+G  A  +EP + QVFLT   + + +F++Q+Y+LR+VS   I      + G  + FY
Sbjct:   230 NSGLGNSALQTEPIIAQVFLTPTTKSKADFEQQMYILRRVSMVAIRAALNLQHGAMKDFY 289

Query:   111 ICSLSNRIVVYKGQFTADQLWKYF-TDL 137
             ICSLS+R +VYKGQ   DQL  Y+  DL
Sbjct:   290 ICSLSSRTIVYKGQLKPDQLKDYYYADL 317

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0005506 "iron ion binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0006537 "glutamate biosynthetic process" evidence=IEA;IDA;IMP

GO:0006807 "nitrogen compound metabolic process" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0010181 "FMN binding" evidence=IEA

GO:0015930 "glutamate synthase activity" evidence=IEA

GO:0016040 "glutamate synthase (NADH) activity" evidence=IEA;IDA;IMP

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016638 "oxidoreductase activity, acting on the CH-NH2 group of donors" evidence=IEA

GO:0016639 "oxidoreductase activity, acting on the CH-NH2 group of donors, NAD or NADP as acceptor" evidence=IEA

GO:0042128 "nitrate assimilation" evidence=TAS

GO:0045181 "glutamate synthase activity, NAD(P)H as acceptor" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0051536 "iron-sulfur cluster binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0019676 "ammonia assimilation cycle" evidence=IMP

GO:0048589 "developmental growth" evidence=IMP

GO:0009507 "chloroplast" evidence=IDA

GO:0046686 "response to cadmium ion" evidence=IEP;RCA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0005829 "cytosol" evidence=RCA

GO:0006094 "gluconeogenesis" evidence=RCA

GO:0006096 "glycolysis" evidence=RCA

GO:0009651 "response to salt stress" evidence=RCA

GO:0009536 "plastid" evidence=TAS

ASPGD|ASPL0000027159 gltA [Emericella nidulans (taxid:162425)]

 Score = 135 (52.6 bits), Expect = 2.6e-14, Sum P(2) = 2.6e-14
 Identities = 28/55 (50%), Positives = 38/55 (69%)

Query:    83 DEEEFKRQIYVLRKVSTHKIPKPGQRFYICSLSNRIVVYKGQFTADQLWKYFTDL 137
             D + F+ Q+YVLRK +TH I      FY+CSLSNR +VYKGQ    Q+++Y+ DL
Sbjct:   207 DTKTFELQLYVLRKRATHIIGLANW-FYLCSLSNRNIVYKGQLAPIQVYQYYHDL 260

GO:0016040 "glutamate synthase (NADH) activity" evidence=ISA;RCA;IMP

GO:0009064 "glutamine family amino acid metabolic process" evidence=IGI;RCA;IMP

GO:0005829 "cytosol" evidence=IEA

GO:0010181 "FMN binding" evidence=IEA

GO:0051536 "iron-sulfur cluster binding" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0006537 "glutamate biosynthetic process" evidence=IEA

GO:0005506 "iron ion binding" evidence=IEA

TIGR_CMR|CPS_0761 CPS_0761 "putative glutamate synthase, ferredoxin-dependent" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 159 (61.0 bits), Expect = 5.1e-14, Sum P(2) = 5.1e-14
 Identities = 39/98 (39%), Positives = 61/98 (62%)

Query:    62 IGEVARNSEPFMRQVFLT--GKQDEEEFKRQIYVLRKVSTHKIPKPG--QR--FYICSLS 115
             +G  + +SEP + QVF+        +EF+R+++VLRK ++HKI   G  +R  FY+ S+S
Sbjct:   137 LGAASFDSEPNIEQVFIAKPAALTAQEFERKLFVLRKYTSHKINASGITERDEFYVTSMS 196

Query:   116 NRIVVYKGQFTADQLWKYFTDLNIIEDAEKLS-MRMNH 152
             +  +VYKGQFT  Q+ +Y+ DL   +D   +S M M H
Sbjct:   197 STKIVYKGQFTTQQVRQYYLDL---QDERTISGMAMFH 231

GO:0006537 "glutamate biosynthetic process" evidence=ISS

GO:0016041 "glutamate synthase (ferredoxin) activity" evidence=ISS

GO:0019676 "ammonia assimilation cycle" evidence=ISS

WB|WBGene00012326 W07E11.1 [Caenorhabditis elegans (taxid:6239)]

 Score = 185 (70.2 bits), Expect = 1.1e-12, P = 1.1e-12
 Identities = 41/99 (41%), Positives = 61/99 (61%)

Query:    42 ACGVGFIVAIDRKRSHKSAGIGEVARNSEPFMRQVFLTG---KQDEEEFKRQIYVLRKVS 98
             ACG+  +VA  RK       IGE A+ +EP +RQVF++    + D  +F+R +Y+LRK +
Sbjct:   124 ACGLR-VVAW-RKLGTNRECIGEEAKKTEPLIRQVFVSADYAESDPAKFERSVYLLRKQA 181

Query:    99 THKIPKPGQRFYICSLSNRIVVYKGQFTADQLWKYFTDL 137
              + + K     Y+CSLS   +VYKGQF   QL+K++ DL
Sbjct:   182 VNSMTKQEIECYVCSLSTSTIVYKGQFNTHQLFKFYDDL 220

GO:0008152 "metabolic process" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0006537 "glutamate biosynthetic process" evidence=IEA

GO:0015930 "glutamate synthase activity" evidence=IEA

GO:0016638 "oxidoreductase activity, acting on the CH-NH2 group of donors" evidence=IEA

GO:0016639 "oxidoreductase activity, acting on the CH-NH2 group of donors, NAD or NADP as acceptor" evidence=IEA

GO:0006807 "nitrogen compound metabolic process" evidence=IEA

GO:0005506 "iron ion binding" evidence=IEA

GO:0010181 "FMN binding" evidence=IEA

GO:0016040 "glutamate synthase (NADH) activity" evidence=IEA

GO:0045181 "glutamate synthase activity, NAD(P)H as acceptor" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0040007 "growth" evidence=IMP

GO:0002119 "nematode larval development" evidence=IMP

GO:0040010 "positive regulation of growth rate" evidence=IMP

UNIPROTKB|Q0JKD0 LOC_Os01g48960 "Glutamate synthase 1 [NADH], chloroplastic" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 157 (60.3 bits), Expect = 1.0e-09, P = 1.0e-09
 Identities = 40/108 (37%), Positives = 64/108 (59%)

Query:    39 EREACGVGFIVAIDRKRSHKSAGIGEVARNSEPFMRQVFLT-GKQDEEEFKRQIYVLRKV 97
             ++ A  +G ++   R+    ++ +GE A  +EP + QVFLT     E +F++Q+Y+LR++
Sbjct:   193 QKVAESLGHVILGWRRVPTDNSDLGESALQTEPVIEQVFLTKSSSSEADFEQQLYILRRL 252

Query:    98 STHKIP------KPGQR-FYICSLSNRIVVYKGQFTADQL-WKYFTDL 137
             S   I       + G+R FY+CSLS+R +VYKGQ    QL   Y+ DL
Sbjct:   253 SILSIRAALNLRRGGKRDFYMCSLSSRTIVYKGQLKPCQLKGYYYADL 300

GO:0006537 "glutamate biosynthetic process" evidence=IMP

GO:0009536 "plastid" evidence=IDA

GO:0019676 "ammonia assimilation cycle" evidence=IMP

GO:0048589 "developmental growth" evidence=IMP

GO:0060359 "response to ammonium ion" evidence=IEP

UNIPROTKB|Q9KPJ4 VC_2373 "Glutamate synthase, large subunit" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)]

 Score = 128 (50.1 bits), Expect = 1.8e-10, Sum P(2) = 1.8e-10
 Identities = 30/82 (36%), Positives = 47/82 (57%)

Query:    62 IGEVARNSEPFMRQVFLTGK--QDEEEFKRQIYVLR----KVSTHKIPKPGQRFYICSLS 115
             +G    ++EP    VF++G      +E +R++YVLR    +V    +   G  FYI S+S
Sbjct:   153 LGADPLSTEPQFEHVFISGGPGMQPDELERKLYVLRNYTVRVCLESVSNIGDDFYINSMS 212

Query:   116 NRIVVYKGQFTADQLWKYFTDL 137
              + +VYKGQ T +Q+ +YF DL
Sbjct:   213 YKTLVYKGQLTTEQVPQYFLDL 234

GO:0006537 "glutamate biosynthetic process" evidence=ISS

GO:0015930 "glutamate synthase activity" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	182
cd00713	413	cd00713, GltS, Glutamine amidotransferases class-I	7e-28
COG0067	371	COG0067, GltB, Glutamate synthase domain 1 [Amino	3e-17
cd00713	413	cd00713, GltS, Glutamine amidotransferases class-I	3e-15
PRK11750	1485	PRK11750, gltB, glutamate synthase subunit alpha;	1e-10
pfam00310	223	pfam00310, GATase_2, Glutamine amidotransferases c	2e-08
COG0067	371	COG0067, GltB, Glutamate synthase domain 1 [Amino	3e-08
COG0067	371	COG0067, GltB, Glutamate synthase domain 1 [Amino	9e-07
PRK11750	1485	PRK11750, gltB, glutamate synthase subunit alpha;	8e-04
PRK11750	1485	PRK11750, gltB, glutamate synthase subunit alpha;	0.001

>gnl|CDD|238365 cd00713, GltS, Glutamine amidotransferases class-II (Gn-AT), glutamate synthase (GltS)-type

 Score =  107 bits (269), Expect = 7e-28
 Identities = 37/102 (36%), Positives = 55/102 (53%), Gaps = 2/102 (1%)

Query: 39  EREACGVGFIVAIDRKRSHKSAGIGEVARNSEPFMRQVFLTGKQ--DEEEFKRQIYVLRK 96
           E E    G  V   R     ++ +G  AR +EP + QVF+      D E F+R++Y+LRK
Sbjct: 94  EEELEAEGLRVLGWRDVPVDNSVLGPTARATEPLIEQVFVGAPSGDDGEAFERKLYLLRK 153

Query: 97  VSTHKIPKPGQRFYICSLSNRIVVYKGQFTADQLWKYFTDLN 138
                I    + FY+CSLS+R +VYKG    +QL +++ DL 
Sbjct: 154 RIEKAIRAADEDFYVCSLSSRTIVYKGMLLPEQLGQFYPDLQ 195

GltS is a homodimer that synthesizes L-glutamate from 2-oxoglutarate and L-glutamine, an important step in ammonia assimilation in bacteria, cyanobacteria and plants. The N-terminal glutaminase domain catalyzes the hydrolysis of glutamine to glutamic acid and ammonia, and has a fold similar to that of other glutamine amidotransferases such as glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), and beta lactam synthetase (beta-LS), as well as the Ntn hydrolase folds of the proteasomal alpha and beta subunits. Length = 413

>gnl|CDD|223145 COG0067, GltB, Glutamate synthase domain 1 [Amino acid transport and metabolism]

 Score = 77.4 bits (191), Expect = 3e-17
 Identities = 34/103 (33%), Positives = 55/103 (53%), Gaps = 5/103 (4%)

Query: 39  EREACGVGFIVAIDRKRSHKSAGIGEVARNSEPFMRQVFLTGKQDEEEFKRQIYVLRKVS 98
           E EA   G  V   R     S+ +GEVA  + P + QVF+      ++F+R +++ RK  
Sbjct: 102 EEEAVAEGLSVLGWRDVPVNSSVLGEVALATMPRIEQVFIG--ASGDDFERVLFIARKRI 159

Query: 99  THKIPKPGQRFYICSLSNRIVVYKGQFTADQLWKYFTDLNIIE 141
             +I   G  FY+CSLS+R +VYKG    + + +++ DL+   
Sbjct: 160 EKRI---GADFYVCSLSSRTIVYKGVGLPEDVAEFYLDLDDER 199

Length = 371

>gnl|CDD|238365 cd00713, GltS, Glutamine amidotransferases class-II (Gn-AT), glutamate synthase (GltS)-type

 Score = 72.2 bits (178), Expect = 3e-15
 Identities = 20/44 (45%), Positives = 29/44 (65%)

Query: 139 IIEDAEKLSMRMNHRGACACDNDSGDGAGVLVAIPHAFYIQKLR 182
           I++DA +   RM HRG    D  +GDGAG+L+ IPH F+ ++L 
Sbjct: 17  IVQDALEALERMEHRGGVGADGKTGDGAGILIQIPHEFFREELA 60

GltS is a homodimer that synthesizes L-glutamate from 2-oxoglutarate and L-glutamine, an important step in ammonia assimilation in bacteria, cyanobacteria and plants. The N-terminal glutaminase domain catalyzes the hydrolysis of glutamine to glutamic acid and ammonia, and has a fold similar to that of other glutamine amidotransferases such as glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), and beta lactam synthetase (beta-LS), as well as the Ntn hydrolase folds of the proteasomal alpha and beta subunits. Length = 413

>gnl|CDD|236968 PRK11750, gltB, glutamate synthase subunit alpha; Provisional

 Score = 59.5 bits (145), Expect = 1e-10
 Identities = 25/77 (32%), Positives = 46/77 (59%), Gaps = 3/77 (3%)

Query: 63  GEVARNSEPFMRQVFLTG--KQDEEEFKRQIYVLRKVSTHKIPKPGQRFYICSLSNRIVV 120
           GE+A +S P + QVF+       E +F+R++++ R+    ++    + FY+CSLSN +++
Sbjct: 130 GEIALSSLPRIEQVFVNAPAGWRERDFERRLFIARRRIEKRLAD-DKDFYVCSLSNLVII 188

Query: 121 YKGQFTADQLWKYFTDL 137
           YKG      L +++ DL
Sbjct: 189 YKGLMMPADLPRFYLDL 205

Length = 1485

>gnl|CDD|215851 pfam00310, GATase_2, Glutamine amidotransferases class-II

 Score = 52.0 bits (125), Expect = 2e-08
 Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 2/45 (4%)

Query: 138 NIIEDAEKLSMRMNHRGACACDNDSGDGAGVLVAIPHAFYIQKLR 182
           +++EDA +   R+ HRG    D +  DGAG+L  IP  F     R
Sbjct: 17  DVVEDALEALERLEHRGGVGADGN--DGAGILTQIPDGFGAPSER 59

Length = 223

>gnl|CDD|223145 COG0067, GltB, Glutamate synthase domain 1 [Amino acid transport and metabolism]

 Score = 51.6 bits (124), Expect = 3e-08
 Identities = 18/41 (43%), Positives = 27/41 (65%)

Query: 139 IIEDAEKLSMRMNHRGACACDNDSGDGAGVLVAIPHAFYIQ 179
           I+EDA +  + + HRGA   D  +GDGAG+L+ IP  F+ +
Sbjct: 29  IVEDALEALVNLTHRGAPGADGYAGDGAGILLQIPDYFFRE 69

Length = 371

>gnl|CDD|223145 COG0067, GltB, Glutamate synthase domain 1 [Amino acid transport and metabolism]

 Score = 47.3 bits (113), Expect = 9e-07
 Identities = 16/32 (50%), Positives = 19/32 (59%)

Query: 32 GLYDPANEREACGVGFIVAIDRKRSHKSAGIG 63
          GLYDPA E +ACG+G I   D + SHK     
Sbjct: 2  GLYDPAFEHDACGIGGIAHKDGRPSHKIVEDA 33

Length = 371

>gnl|CDD|236968 PRK11750, gltB, glutamate synthase subunit alpha; Provisional

 Score = 39.1 bits (92), Expect = 8e-04
 Identities = 14/29 (48%), Positives = 18/29 (62%)

Query: 149 RMNHRGACACDNDSGDGAGVLVAIPHAFY 177
           RM HRG  A D  +GDG G+L+  P  F+
Sbjct: 41  RMTHRGGIAADGKTGDGCGLLLQKPDRFF 69

Length = 1485

>gnl|CDD|236968 PRK11750, gltB, glutamate synthase subunit alpha; Provisional

 Score = 38.7 bits (91), Expect = 0.001
 Identities = 14/29 (48%), Positives = 19/29 (65%)

Query: 30 ASGLYDPANEREACGVGFIVAIDRKRSHK 58
            GLYDP+ ER+ CG G I  ++ + SHK
Sbjct: 2  HMGLYDPSLERDNCGFGLIAHMEGEPSHK 30

Length = 1485

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	182
PRK11750	1485	gltB glutamate synthase subunit alpha; Provisional	100.0
KOG0399|consensus	2142		100.0
COG0067	371	GltB Glutamate synthase domain 1 [Amino acid trans	100.0
cd00713	413	GltS Glutamine amidotransferases class-II (Gn-AT),	100.0
PF00310	361	GATase_2: Glutamine amidotransferases class-II; In	100.0
cd00713	413	GltS Glutamine amidotransferases class-II (Gn-AT),	98.57
PRK11750	1485	gltB glutamate synthase subunit alpha; Provisional	98.21
KOG0399|consensus	2142		98.12
cd01907	249	GlxB Glutamine amidotransferases class-II (Gn-AT)_	97.7
COG0067	371	GltB Glutamate synthase domain 1 [Amino acid trans	97.22
PRK07847	510	amidophosphoribosyltransferase; Provisional	93.16
PRK07349	500	amidophosphoribosyltransferase; Provisional	80.78

>PRK11750 gltB glutamate synthase subunit alpha; Provisional

Probab=100.00  E-value=6.9e-48  Score=386.98  Aligned_cols=143  Identities=29%  Similarity=0.551  Sum_probs=133.6

Q ss_pred             CCCCCCCCCcccCCceeEEEeeCCCCcccc--------------------------------------------------
Q psy12804         30 ASGLYDPANEREACGVGFIVAIDRKRSHKS--------------------------------------------------   59 (182)
Q Consensus        30 ~~gLY~p~~E~DaCGvGfIa~i~g~~sh~i--------------------------------------------------   59 (182)
                      ++|||||++|||||||||||+|+|++||+|                                                  
T Consensus         2 ~~glydp~~E~DaCGvGfiA~i~G~~Sh~iV~~al~aL~~m~HRGa~gaD~~tGDGAGIl~qIP~~ff~~~~~~~g~~lp   81 (1485)
T PRK11750          2 HMGLYDPSLERDNCGFGLIAHMEGEPSHKLVRTAIHALARMTHRGGIAADGKTGDGCGLLLQKPDRFFRAVAEEAGWRLA   81 (1485)
T ss_pred             CCCCCCccccccCCcceEEEEcCCCccHHHHHHHHHHHHhccCcCcccCCCCCCCcceeeccCCHHHHHHHHHHcCCCCC
Confidence            579999999999999999999999999999                                                  


Q ss_pred             ---------------------------------------------cccChhHHhcCCceEEEEEcCC--CChHHHHHHHH
Q psy12804         60 ---------------------------------------------AGIGEVARNSEPFMRQVFLTGK--QDEEEFKRQIY   92 (182)
Q Consensus        60 ---------------------------------------------~~LG~~A~~t~P~I~Qvfv~~~--~~~~~fEr~Ly   92 (182)
                                                                   ++||+.|++++|.|||+||.++  .+..+|||+||
T Consensus        82 ~~yaVgm~Flp~d~~~~~~~~~~~e~~~~~~gl~vlgwR~VPv~~~~LG~~A~~~~P~i~Q~fv~~~~~~~~~~fer~Ly  161 (1485)
T PRK11750         82 KNYAVGMVFLNQDPELAAAARRILEEELQRETLSVVGWREVPTNPSVLGEIALSSLPRIEQVFVNAPAGWRERDFERRLF  161 (1485)
T ss_pred             ccceEEEEEcCCCHHHHHHHHHHHHHHHHHCCCEEEEEEcCCCCccccchhHhhCCCeEEEEEEccCCCCChhhHHHHHH
Confidence                                                         7999999999999999999864  24467999999


Q ss_pred             HHHHHHhhhcCCCCCceEEeccCCcceeeecccChhchhhhhhhhccchHHHHHHHhhhccccccCCCCCCCcccccccc
Q psy12804         93 VLRKVSTHKIPKPGQRFYICSLSNRIVVYKGQFTADQLWKYFTDLNIIEDAEKLSMRMNHRGACACDNDSGDGAGVLVAI  172 (182)
Q Consensus        93 ~~Rk~iE~~~~~~~~~fYi~SLSsrTIVYKGml~~~qL~~yY~DLqdp~~~Sa~a~~m~HRr~~~~~~~~gDgagil~~i  172 (182)
                      ++||++|+.+.. ..+|||||||+||||||||++|+||.+||+||+||+|+|+||  ++|+||||||.|+|++|||+|.|
T Consensus       162 ~~R~~~e~~~~~-~~~~Yi~SlS~rtiVYKGml~~~ql~~fY~DL~d~~~~s~~a--l~HsRFSTNT~PsW~~AqPFR~l  238 (1485)
T PRK11750        162 IARRRIEKRLAD-DKDFYVCSLSNLVIIYKGLMMPADLPRFYLDLADLRLESAIC--VFHQRFSTNTLPRWPLAQPFRYL  238 (1485)
T ss_pred             HHHHHHHHhhcc-CCCEEEEecCCCcceeEecccHHHHHHhhhhhCCcceeEEEE--EEECcCCCCCCCCCCcCCCceee
Confidence            999999987633 346999999999999999999999999999999999999988  99999999999999999999999


Q ss_pred             cHH
Q psy12804        173 PHA  175 (182)
Q Consensus       173 ph~  175 (182)
                      .||
T Consensus       239 aHN  241 (1485)
T PRK11750        239 AHN  241 (1485)
T ss_pred             eec
Confidence            997

>KOG0399|consensus

Probab=100.00  E-value=9.6e-46  Score=362.47  Aligned_cols=146  Identities=40%  Similarity=0.687  Sum_probs=136.1

Q ss_pred             CCCCCCCCCCCCcccCCceeEEEeeCCCCcccc-----------------------------------------------
Q psy12804         27 GPAASGLYDPANEREACGVGFIVAIDRKRSHKS-----------------------------------------------   59 (182)
Q Consensus        27 ~~~~~gLY~p~~E~DaCGvGfIa~i~g~~sh~i-----------------------------------------------   59 (182)
                      .|+.+|||||..||||||||||||++|+.||+|                                               
T Consensus        63 ~p~~~~L~dp~~ErdaCGVGFvanl~g~~shkivtDA~~~L~~MtHRGacg~Dn~sGDGaGilt~iP~df~~~~~k~q~g  142 (2142)
T KOG0399|consen   63 APQKAGLYDPQYERDACGVGFVANLKGETSHKIVTDARIMLGRMTHRGACGCDNDSGDGAGILTGIPHDFYNKEAKEQLG  142 (2142)
T ss_pred             CchhccccCccccccCccceeEEecCCccccchHHHHHHHHHhhhccCccCCCCCCCCccceeecCCHHHHHHHHhhccC
Confidence            566789999999999999999999999999999                                               


Q ss_pred             ---------------------------------------------------cccChhHHhcCCceEEEEEcCC-------
Q psy12804         60 ---------------------------------------------------AGIGEVARNSEPFMRQVFLTGK-------   81 (182)
Q Consensus        60 ---------------------------------------------------~~LG~~A~~t~P~I~Qvfv~~~-------   81 (182)
                                                                         ++||+.|+++||.|.|+|+.+.       
T Consensus       143 ~~lp~~g~yavGm~Flp~~d~~rkeak~vf~~~ae~~gl~VLgWR~Vp~d~silG~~A~~teP~i~Qv~l~p~~~~~~ae  222 (2142)
T KOG0399|consen  143 LDLPDLGHYAVGMFFLPAEDNKRKEAKKVFTDLAEKLGLSVLGWRKVPVDNSILGENALSTEPTILQVFLFPTYDAIYAE  222 (2142)
T ss_pred             CCCcccCcceEEEEEcchhHhHHHHHHHHHHHHHHHcCceEEEeeccCCcccccChhhhhcCCchhhhccccchhccccc
Confidence                                                               8999999999999999976421       


Q ss_pred             CChHHHHHHHHHHHHHHhhhcCCCCCceEEeccCCcceeeecccChhchhhhhhhhccchHHHHHHHhhhccccccCCCC
Q psy12804         82 QDEEEFKRQIYVLRKVSTHKIPKPGQRFYICSLSNRIVVYKGQFTADQLWKYFTDLNIIEDAEKLSMRMNHRGACACDND  161 (182)
Q Consensus        82 ~~~~~fEr~Ly~~Rk~iE~~~~~~~~~fYi~SLSsrTIVYKGml~~~qL~~yY~DLqdp~~~Sa~a~~m~HRr~~~~~~~  161 (182)
                      .+.++|||.||++||.+++.+.. ...|||||||++||||||||+|+||..||+||+|++|+|+||  ++|+||||||.|
T Consensus       223 ~~~~~fer~ly~lRk~~~~~i~~-~~e~YvcSLsn~TIVYKGql~~~ql~~yY~DL~N~~y~S~~A--lvHsRFSTNTfP  299 (2142)
T KOG0399|consen  223 FDTDKFERSLYLLRKQASLQIGK-EKEFYVCSLSNQTIVYKGQLRPEQLYNYYPDLTNAEYKSHFA--LVHSRFSTNTFP  299 (2142)
T ss_pred             ccHHHHHHHHHHHHHHHHHhhhh-cceEEEEeccCceEEEecccCHHHHhhhcccccchhhcccce--eeeeccccCCCC
Confidence            35689999999999999998764 357999999999999999999999999999999999999988  999999999999


Q ss_pred             CCCcccccccccHH
Q psy12804        162 SGDGAGVLVAIPHA  175 (182)
Q Consensus       162 ~gDgagil~~iph~  175 (182)
                      +||.|||||.++||
T Consensus       300 sWdrAQPmR~l~HN  313 (2142)
T KOG0399|consen  300 SWDRAQPMRFLAHN  313 (2142)
T ss_pred             Cccccccchhhhcc
Confidence            99999999999997

>COG0067 GltB Glutamate synthase domain 1 [Amino acid transport and metabolism]

Probab=100.00  E-value=2.5e-44  Score=323.27  Aligned_cols=138  Identities=33%  Similarity=0.536  Sum_probs=131.5

Q ss_pred             CCCCCCCCcccCCceeEEEeeCCCCcccc---------------------------------------------------
Q psy12804         31 SGLYDPANEREACGVGFIVAIDRKRSHKS---------------------------------------------------   59 (182)
Q Consensus        31 ~gLY~p~~E~DaCGvGfIa~i~g~~sh~i---------------------------------------------------   59 (182)
                      +|||+|.+||||||||||++++|++||+|                                                   
T Consensus         1 ~gly~~~~e~daCGig~i~~~~g~~sh~iv~~~~~~L~~m~hRG~~~adg~~gdGagil~~~p~~f~~~~~~~~~~~p~~   80 (371)
T COG0067           1 QGLYDPAFEHDACGIGGIAHKDGRPSHKIVEDALEALVNLTHRGAPGADGYAGDGAGILLQIPDYFFREEADKGIKLPEA   80 (371)
T ss_pred             CCCCCCccccccCcEEEEEecCCCcchhHHHHHHHHHHhhhccCCCCCCcccccCcchhhcCCHHHHHHHHhcccCCCCc
Confidence            58999999999999999999999999999                                                   


Q ss_pred             ------------------------------------------cccChhHHhcCCceEEEEEcCCCChHHHHHHHHHHHHH
Q psy12804         60 ------------------------------------------AGIGEVARNSEPFMRQVFLTGKQDEEEFKRQIYVLRKV   97 (182)
Q Consensus        60 ------------------------------------------~~LG~~A~~t~P~I~Qvfv~~~~~~~~fEr~Ly~~Rk~   97 (182)
                                                                +++|+.|.+++|.|+||||.  .+.++|||+||++||+
T Consensus        81 ~~y~vg~~fl~~~~~~~~~i~~~~~~~e~~~vlgwR~vp~~~~~~g~~a~~~~p~~~qv~i~--~~~~~~e~~l~i~r~~  158 (371)
T COG0067          81 GFYAVGMVFLPQERAAAREIPEEEAVAEGLSVLGWRDVPVNSSVLGEVALATMPRIEQVFIG--ASGDDFERVLFIARKR  158 (371)
T ss_pred             ccccceEEEeccchhhhhhhhhHHHhhcCCceeeEEecccCchhcchhhhhcCCchheeEee--cCchhhhhhhhhhhhh
Confidence                                                      56899999999999999997  4567999999999999


Q ss_pred             HhhhcCCCCCceEEeccCCcceeeecccChhchhhhhhhhccchHHHHHHHhhhccccccCCCCCCCcccccccccHH
Q psy12804         98 STHKIPKPGQRFYICSLSNRIVVYKGQFTADQLWKYFTDLNIIEDAEKLSMRMNHRGACACDNDSGDGAGVLVAIPHA  175 (182)
Q Consensus        98 iE~~~~~~~~~fYi~SLSsrTIVYKGml~~~qL~~yY~DLqdp~~~Sa~a~~m~HRr~~~~~~~~gDgagil~~iph~  175 (182)
                      ||+++..   +|||||||++|||||||++|+||.+||+||+||+|+|+++  ++|+||||||.|+|.+|+|++.+.||
T Consensus       159 ~~~~~~~---~~yv~S~s~~t~VYKG~~~p~~V~~~y~dl~~~~~~s~~~--l~HsRFSTNT~p~W~~AHPfr~lvHN  231 (371)
T COG0067         159 IEKRIGA---DFYVCSLSSRTIVYKGVGLPEDVAEFYLDLDDERYKSAIA--LVHTRFSTNTFPSWPLAHPFRLLVHN  231 (371)
T ss_pred             hhhcccC---CEEEEecCCCeEEEecccCHHHHHHHHhhccchhhceeEE--EEEeccCCCCCCCCCccCcceeeeec
Confidence            9998764   7999999999999999999999999999999999999977  99999999999999999999999997

>cd00713 GltS Glutamine amidotransferases class-II (Gn-AT), glutamate synthase (GltS)-type

Probab=100.00  E-value=4.7e-43  Score=318.98  Aligned_cols=114  Identities=32%  Similarity=0.516  Sum_probs=105.7

Q ss_pred             cccChhHHhcCCceEEEEEcCC--CChHHHHHHHHHHHHHHhhhcCCCCCceEEeccCCcceeeecccChhchhhhhhhh
Q psy12804         60 AGIGEVARNSEPFMRQVFLTGK--QDEEEFKRQIYVLRKVSTHKIPKPGQRFYICSLSNRIVVYKGQFTADQLWKYFTDL  137 (182)
Q Consensus        60 ~~LG~~A~~t~P~I~Qvfv~~~--~~~~~fEr~Ly~~Rk~iE~~~~~~~~~fYi~SLSsrTIVYKGml~~~qL~~yY~DL  137 (182)
                      ++||+.|++++|.|||+||.++  .+..+|||+||++||++|+.+.....+|||||||++|||||||++|+||..||+||
T Consensus       115 ~~lG~~a~~~~P~i~Q~fv~~~~~~~~~~~er~l~~~r~~~e~~~~~~~~~~yv~Sls~~~iVyKGm~~~~~v~~~Y~DL  194 (413)
T cd00713         115 SVLGPTARATEPLIEQVFVGAPSGDDGEAFERKLYLLRKRIEKAIRAADEDFYVCSLSSRTIVYKGMLLPEQLGQFYPDL  194 (413)
T ss_pred             hhcchhhhhcCCeEEEEEEecCCccCcchHHHHHHHHHHHHHHHHHhcCCCEEEEecccceEEEeccccHHHHHHhcccc
Confidence            8999999999999999999865  23567999999999999998754334699999999999999999999999999999


Q ss_pred             ccchHHHHHHHhhhccccccCCCCCCCcccccccccHH
Q psy12804        138 NIIEDAEKLSMRMNHRGACACDNDSGDGAGVLVAIPHA  175 (182)
Q Consensus       138 qdp~~~Sa~a~~m~HRr~~~~~~~~gDgagil~~iph~  175 (182)
                      +||+|+|++|  +.|+||||||.|+|++|||++.|.||
T Consensus       195 ~~~~~~s~~a--l~H~RfSTNT~p~W~~AqPfr~laHN  230 (413)
T cd00713         195 QDPRFESAFA--LVHSRFSTNTFPSWPLAQPFRYLAHN  230 (413)
T ss_pred             CcccceEEEE--EEEEecCCCCCCCcccCCcceeEEEc
Confidence            9999999988  99999999999999999999999997

GltS is a homodimer that synthesizes L-glutamate from 2-oxoglutarate and L-glutamine, an important step in ammonia assimilation in bacteria, cyanobacteria and plants. The N-terminal glutaminase domain catalyzes the hydrolysis of glutamine to glutamic acid and ammonia, and has a fold similar to that of other glutamine amidotransferases such as glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), and beta lactam synthetase (beta-LS), as well as the Ntn hydrolase folds of the proteasomal alpha and beta subunits.

>PF00310 GATase_2: Glutamine amidotransferases class-II; InterPro: IPR000583 A large group of biosynthetic enzymes are able to catalyse the removal of the ammonia group from glutamine and then to transfer this group to a substrate to form a new carbon-nitrogen group

Probab=100.00  E-value=2.1e-39  Score=290.66  Aligned_cols=113  Identities=34%  Similarity=0.582  Sum_probs=99.9

Q ss_pred             cccChhHHhcCCceEEEEEcCCCChHHHHHHHHHHHHHHhhhcCCCCCceEEeccCCcceeeecccChhchhhhhhhhcc
Q psy12804         60 AGIGEVARNSEPFMRQVFLTGKQDEEEFKRQIYVLRKVSTHKIPKPGQRFYICSLSNRIVVYKGQFTADQLWKYFTDLNI  139 (182)
Q Consensus        60 ~~LG~~A~~t~P~I~Qvfv~~~~~~~~fEr~Ly~~Rk~iE~~~~~~~~~fYi~SLSsrTIVYKGml~~~qL~~yY~DLqd  139 (182)
                      ++||+.|++++|.|||+||.++....+||++||++||++|+..... ..|||||||++|||||||++|+||..||+||+|
T Consensus       112 ~~lg~~a~~~~P~i~Q~fv~~~~~~~~~e~~l~~~rk~~e~~~~~~-~~~yv~SlS~~tivYKg~~~~~~l~~~y~Dl~~  190 (361)
T PF00310_consen  112 SVLGPIARKTEPLIWQVFVAPPEGEEEFERRLYLIRKRIEKAIEED-DAFYVCSLSSRTIVYKGMGTPEQLAEFYPDLQD  190 (361)
T ss_dssp             GGS-HHHHHC--EEEEEEEE-TT-HHHHHHHHHHHHHHHHHHHCCH-TTBEEEEEESSEEEEEECC-GGGHHHHCCGGGC
T ss_pred             hhccHhHHhcCCcEEEEEEECCcchhhHHHHHHHHHHHHHHhhhhc-CCEEEEecCcchhhhhhccCHHHHHHHHHhhcc
Confidence            8999999999999999999887557899999999999999987542 239999999999999999999999999999999


Q ss_pred             chHHHHHHHhhhccccccCCCCCCCcccccccccHH
Q psy12804        140 IEDAEKLSMRMNHRGACACDNDSGDGAGVLVAIPHA  175 (182)
Q Consensus       140 p~~~Sa~a~~m~HRr~~~~~~~~gDgagil~~iph~  175 (182)
                      ++|+++++  +.|.|++||+.++|.+|||++.|.||
T Consensus       191 ~~~~s~~~--i~H~RysTnt~p~w~~AqPf~~laHN  224 (361)
T PF00310_consen  191 EDFKSHFA--IGHQRYSTNTFPSWENAQPFRALAHN  224 (361)
T ss_dssp             TTEEBSEE--EEEEEE-SSSSCSGGGSSSEEEEEEE
T ss_pred             ccccceEE--EEEEecCCCCCCcchhcChHHHhhhc
Confidence            99999987  99999999999999999999999998

This catalytic activity is known as glutamine amidotransferase (GATase) (2.4.2 from EC) []. The GATase domain exists either as a separate polypeptidic subunit or as part of a larger polypeptide fused in different ways to a synthase domain. On the basis of sequence similarities two classes of GATase domains have been identified [, ], class-I (also known as trpG-type) and class-II (also known as purF-type). Enzymes containing Class-II GATase domains include amido phosphoribosyltransferase (glutamine phosphoribosylpyrophosphate amidotransferase) (2.4.2.14 from EC), which catalyses the first step in purine biosynthesis (gene purF in bacteria, ADE4 in yeast); glucosamine--fructose-6-phosphate aminotransferase (2.6.1.16 from EC), which catalyses the formation of glucosamine 6-phosphate from fructose 6-phosphate and glutamine (gene glmS in Escherichia coli, nodM in Rhizobium, GFA1 in yeast); and asparagine synthetase (glutamine-hydrolizing) (6.3.5.4 from EC), which is responsible for the synthesis of asparagine from aspartate and glutamine. A cysteine is present at the N-terminal extremity of the mature form of all these enzymes. This domain is found in a number of cysteine peptidases belonging to MEROPS peptidase family C44 and their non-peptidase homologs. ; GO: 0008152 metabolic process; PDB: 1OFE_A 1LLW_A 1OFD_A 1LLZ_A 1LM1_A 1GPH_1 1AO0_D 3OOJ_E 1JXA_C 2J6H_B ....

>cd00713 GltS Glutamine amidotransferases class-II (Gn-AT), glutamate synthase (GltS)-type

Probab=98.57  E-value=2.7e-08  Score=91.67  Aligned_cols=35  Identities=49%  Similarity=0.978  Sum_probs=32.7

Q ss_pred             HHhhhccccccCCCCCCCcccccccccHHHHHhhh
Q psy12804        147 SMRMNHRGACACDNDSGDGAGVLVAIPHAFYIQKL  181 (182)
Q Consensus       147 a~~m~HRr~~~~~~~~gDgagil~~iph~~~~~~~  181 (182)
                      ..+|.|||++++++++|||||||++|||+||++++
T Consensus        25 L~~m~HRGa~~ad~~tGDGaGil~~iP~~f~~~~~   59 (413)
T cd00713          25 LERMEHRGGVGADGKTGDGAGILIQIPHEFFREEL   59 (413)
T ss_pred             HhhCcCCCcccCCCCCCCcceEeccCCHHHHHHHH
Confidence            36899999999999999999999999999999875

GltS is a homodimer that synthesizes L-glutamate from 2-oxoglutarate and L-glutamine, an important step in ammonia assimilation in bacteria, cyanobacteria and plants. The N-terminal glutaminase domain catalyzes the hydrolysis of glutamine to glutamic acid and ammonia, and has a fold similar to that of other glutamine amidotransferases such as glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), and beta lactam synthetase (beta-LS), as well as the Ntn hydrolase folds of the proteasomal alpha and beta subunits.

>PRK11750 gltB glutamate synthase subunit alpha; Provisional

Probab=98.21  E-value=7.3e-07  Score=92.20  Aligned_cols=35  Identities=40%  Similarity=0.740  Sum_probs=32.7

Q ss_pred             HHhhhccccccCCCCCCCcccccccccHHHHHhhh
Q psy12804        147 SMRMNHRGACACDNDSGDGAGVLVAIPHAFYIQKL  181 (182)
Q Consensus       147 a~~m~HRr~~~~~~~~gDgagil~~iph~~~~~~~  181 (182)
                      ..+|+|||++++++++|||||||++|||+||++++
T Consensus        39 L~~m~HRGa~gaD~~tGDGAGIl~qIP~~ff~~~~   73 (1485)
T PRK11750         39 LARMTHRGGIAADGKTGDGCGLLLQKPDRFFRAVA   73 (1485)
T ss_pred             HHhccCcCcccCCCCCCCcceeeccCCHHHHHHHH
Confidence            45899999999999999999999999999999875

>KOG0399|consensus

Probab=98.12  E-value=1.5e-06  Score=88.47  Aligned_cols=35  Identities=66%  Similarity=1.216  Sum_probs=32.8

Q ss_pred             HHhhhccccccCCCCCCCcccccccccHHHHHhhh
Q psy12804        147 SMRMNHRGACACDNDSGDGAGVLVAIPHAFYIQKL  181 (182)
Q Consensus       147 a~~m~HRr~~~~~~~~gDgagil~~iph~~~~~~~  181 (182)
                      ..||.|||+|++++.+|||||+|+.|||+||++.+
T Consensus       103 L~~MtHRGacg~Dn~sGDGaGilt~iP~df~~~~~  137 (2142)
T KOG0399|consen  103 LGRMTHRGACGCDNDSGDGAGILTGIPHDFYNKEA  137 (2142)
T ss_pred             HHhhhccCccCCCCCCCCccceeecCCHHHHHHHH
Confidence            46899999999999999999999999999999875

>cd01907 GlxB Glutamine amidotransferases class-II (Gn-AT)_GlxB-type

Probab=97.70  E-value=2.5e-05  Score=66.94  Aligned_cols=78  Identities=13%  Similarity=0.076  Sum_probs=62.9

Q ss_pred             HHHHHHHHHHhhhcC-CC-------CCceEEeccCCcceeeecccChhchhhhhhhhccchHHHHHHHhhhccccccCCC
Q psy12804         89 RQIYVLRKVSTHKIP-KP-------GQRFYICSLSNRIVVYKGQFTADQLWKYFTDLNIIEDAEKLSMRMNHRGACACDN  160 (182)
Q Consensus        89 r~Ly~~Rk~iE~~~~-~~-------~~~fYi~SLSsrTIVYKGml~~~qL~~yY~DLqdp~~~Sa~a~~m~HRr~~~~~~  160 (182)
                      ..|+..-.+++++-. +.       ..++|+.|+|.+++|||++..+.+|.++|. +  +.+.+.++  +.|.|.+|+..
T Consensus        17 ~~~~~~l~~lqhRG~~dsaGia~~~~~~~~~~s~~~~~~~~K~~G~~~~v~~~~~-~--~~~~~~~~--igH~R~aT~g~   91 (249)
T cd01907          17 ALLVEMLDAMQERGPGDGAGFALYGDPDAFVYSSGKDMEVFKGVGYPEDIARRYD-L--EEYKGYHW--IAHTRQPTNSA   91 (249)
T ss_pred             HHHHHHHHHHHhcCCCCCceEEEEcCCCeEEEecCCCeEEEeeccCHHHHHhhcC-c--hheEEEEE--EEEEeccCCCC
Confidence            456667777787765 32       135788999999999999999999999885 4  56778766  99999999887


Q ss_pred             CCCCccccccc
Q psy12804        161 DSGDGAGVLVA  171 (182)
Q Consensus       161 ~~gDgagil~~  171 (182)
                      .++.++||++.
T Consensus        92 ~~~~n~qP~~~  102 (249)
T cd01907          92 VWWYGAHPFSI  102 (249)
T ss_pred             CCccCCCCeec
Confidence            77889999975

GlxB is a glutamine amidotransferase-like protein of unknown function found in bacteria and archaea. GlxB has a structural fold similar to that of other class II glutamine amidotransferases including glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS). The GlxB fold is also somewhat similar to the Ntn (N-terminal nucleophile) hydrolase fold of the proteasomal alpha and beta subunits.

>COG0067 GltB Glutamate synthase domain 1 [Amino acid transport and metabolism]

Probab=97.22  E-value=0.00025  Score=64.95  Aligned_cols=38  Identities=37%  Similarity=0.685  Sum_probs=33.6

Q ss_pred             HHHHHhhhccccccCCCCCCCcccccccccHHHHHhhh
Q psy12804        144 EKLSMRMNHRGACACDNDSGDGAGVLVAIPHAFYIQKL  181 (182)
Q Consensus       144 Sa~a~~m~HRr~~~~~~~~gDgagil~~iph~~~~~~~  181 (182)
                      ...-.+|.|||+.++++.+||||||++++|+.||.+.+
T Consensus        34 ~~~L~~m~hRG~~~adg~~gdGagil~~~p~~f~~~~~   71 (371)
T COG0067          34 LEALVNLTHRGAPGADGYAGDGAGILLQIPDYFFREEA   71 (371)
T ss_pred             HHHHHhhhccCCCCCCcccccCcchhhcCCHHHHHHHH
Confidence            44456799999999999999999999999999999864

>PRK07847 amidophosphoribosyltransferase; Provisional

Probab=93.16  E-value=0.11  Score=49.62  Aligned_cols=75  Identities=13%  Similarity=0.117  Sum_probs=53.3

Q ss_pred             HHHHHHHHHHhhhcCCCCCceEEeccCC-cceeeecccChhchhhhhhhhccchHHHHHHHhhhccccccCCCCCCCccc
Q psy12804         89 RQIYVLRKVSTHKIPKPGQRFYICSLSN-RIVVYKGQFTADQLWKYFTDLNIIEDAEKLSMRMNHRGACACDNDSGDGAG  167 (182)
Q Consensus        89 r~Ly~~Rk~iE~~~~~~~~~fYi~SLSs-rTIVYKGml~~~qL~~yY~DLqdp~~~Sa~a~~m~HRr~~~~~~~~gDgag  167 (182)
                      ..+|..-..++++-.+.   .=|++... +..+|||+....++   |.|..-+.+...++  +-|.|.+|...+++.++|
T Consensus        38 ~~~~~gL~~LqHRGqds---aGIa~~d~~~i~~~K~~Glv~~v---f~d~~l~~l~G~i~--IGHvR~sT~G~~~~~naQ  109 (510)
T PRK07847         38 KLTYYGLYALQHRGQEA---AGIAVSDGSQILVFKDLGLVSQV---FDEQTLASLQGHVA--IGHCRYSTTGASTWENAQ  109 (510)
T ss_pred             HHHHHHHHHHhhhCcCc---ccEEEEeCCEEEEEecCccHHHh---hchhhhhhcCCcEE--EEeccCCcCCCCcccCCC
Confidence            44677777788765432   23444444 57899999887666   55544456677755  889999999888889999


Q ss_pred             cccc
Q psy12804        168 VLVA  171 (182)
Q Consensus       168 il~~  171 (182)
                      |+..
T Consensus       110 P~~~  113 (510)
T PRK07847        110 PTFR  113 (510)
T ss_pred             CcCc
Confidence            9974

>PRK07349 amidophosphoribosyltransferase; Provisional

Probab=80.78  E-value=1.7  Score=41.39  Aligned_cols=76  Identities=13%  Similarity=0.090  Sum_probs=49.7

Q ss_pred             HHHHHHHHHHhhhcCCCCCceEEeccCCcceeeecccChhchhhhhhhhccchHHHHHHHhhhccccccCCCCCCCcccc
Q psy12804         89 RQIYVLRKVSTHKIPKPGQRFYICSLSNRIVVYKGQFTADQLWKYFTDLNIIEDAEKLSMRMNHRGACACDNDSGDGAGV  168 (182)
Q Consensus        89 r~Ly~~Rk~iE~~~~~~~~~fYi~SLSsrTIVYKGml~~~qL~~yY~DLqdp~~~Sa~a~~m~HRr~~~~~~~~gDgagi  168 (182)
                      ..+|..-..++|+-.+. .++.+.. ..+..++||+....++   |.+..-..+...++  +-|.|.+|....++.+|||
T Consensus        48 ~~~~~gL~~LqHRGqds-aGIa~~~-~~~~~~~K~~Glv~~v---f~~~~l~~l~G~i~--IGHvRysT~G~~~~~naQP  120 (500)
T PRK07349         48 KLTYFGLYALQHRGQES-AGIATFE-GDKVHLHKDMGLVSQV---FDEDILEELPGDLA--VGHTRYSTTGSSRKANAQP  120 (500)
T ss_pred             HHHHHHHHHhcccCcCc-ceEEEEe-CCEEEEEecCcchhhh---cchhhhhcCCCCEE--EEEeecccCCCCCccCCCC
Confidence            34666777778765432 1233322 3457899999875554   44322235566655  8899999988777789999


Q ss_pred             ccc
Q psy12804        169 LVA  171 (182)
Q Consensus       169 l~~  171 (182)
                      +..
T Consensus       121 ~~~  123 (500)
T PRK07349        121 AVL  123 (500)
T ss_pred             eEe
Confidence            973

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	182
2vdc_A	1472	The 9.5 A Resolution Structure Of Glutamate Synthas		6e-08
1ea0_A	1479	Alpha Subunit Of A. Brasilense Glutamate Synthase L		6e-08
1llw_A	1520	Structural Studies On The Synchronization Of Cataly		5e-07

>pdb|2VDC|A Chain A, The 9.5 A Resolution Structure Of Glutamate Synthase From Cryo-Electron Microscopy And Its Oligomerization Behavior In Solution: Functional Implications. Length = 1472

Iteration: 1
 Score = 53.5 bits (127), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 30/80 (37%), Positives = 47/80 (58%), Gaps = 5/80 (6%)
Query: 62  IGEVARNSEPFMRQVFLTGKQ--DEEEFKRQIYVLRKVSTHKIPKPGQ--RFYICSLSNR 117
           IGE A  + P + Q+ +   +   +E+F+  +Y++R+    K  K  Q   FYICSLS R
Sbjct: 117 IGEKANATRPEIEQIIVGNNKGVSDEQFELDLYIIRR-RIEKAVKGEQINDFYICSLSAR 175
Query: 118 IVVYKGQFTADQLWKYFTDL 137
            ++YKG F A+QL  ++ DL
Sbjct: 176 SIIYKGMFLAEQLTTFYPDL 195

>pdb|1EA0|A Chain A, Alpha Subunit Of A. Brasilense Glutamate Synthase Length = 1479

Iteration: 1
 Score = 53.5 bits (127), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 30/80 (37%), Positives = 47/80 (58%), Gaps = 5/80 (6%)
Query: 62  IGEVARNSEPFMRQVFLTGKQ--DEEEFKRQIYVLRKVSTHKIPKPGQ--RFYICSLSNR 117
           IGE A  + P + Q+ +   +   +E+F+  +Y++R+    K  K  Q   FYICSLS R
Sbjct: 117 IGEKANATRPEIEQIIVGNNKGVSDEQFELDLYIIRR-RIEKAVKGEQINDFYICSLSAR 175
Query: 118 IVVYKGQFTADQLWKYFTDL 137
            ++YKG F A+QL  ++ DL
Sbjct: 176 SIIYKGMFLAEQLTTFYPDL 195

>pdb|1LLW|A Chain A, Structural Studies On The Synchronization Of Catalytic Centers In Glutamate Synthase: Complex With 2-Oxoglutarate Length = 1520

Iteration: 1
 Score = 50.4 bits (119), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 23/44 (52%), Positives = 27/44 (61%)
Query: 136 DLNIIEDAEKLSMRMNHRGACACDNDSGDGAGVLVAIPHAFYIQ 179
           D  ++E A K    M HRG C+ DNDSGDGAGV+ AIP     Q
Sbjct: 14  DHTLVEQALKALGCMEHRGGCSADNDSGDGAGVMTAIPRELLAQ 57

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	182
1ea0_A	1479	Glutamate synthase [NADPH] large chain; oxidoreduc	6e-28
1ea0_A	1479	Glutamate synthase [NADPH] large chain; oxidoreduc	1e-14
1ofd_A	1520	Ferredoxin-dependent glutamate synthase 2; oxidore	1e-27
1ofd_A	1520	Ferredoxin-dependent glutamate synthase 2; oxidore	4e-11

>1ea0_A Glutamate synthase [NADPH] large chain; oxidoreductase, iron sulphur flavoprotein; HET: OMT FMN AKG; 3.0A {Azospirillum brasilense} SCOP: b.80.4.1 c.1.4.1 d.153.1.1 PDB: 2vdc_A* Length = 1479

 Score =  108 bits (272), Expect = 6e-28
 Identities = 27/83 (32%), Positives = 45/83 (54%), Gaps = 3/83 (3%)

Query: 59  SAGIGEVARNSEPFMRQVFLTGKQ--DEEEFKRQIYVLRKVSTHKIPKPGQR-FYICSLS 115
              IGE A  + P + Q+ +   +   +E+F+  +Y++R+     +       FYICSLS
Sbjct: 114 VDIIGEKANATRPEIEQIIVGNNKGVSDEQFELDLYIIRRRIEKAVKGEQINDFYICSLS 173

Query: 116 NRIVVYKGQFTADQLWKYFTDLN 138
            R ++YKG F A+QL  ++ DL 
Sbjct: 174 ARSIIYKGMFLAEQLTTFYPDLL 196

>1ea0_A Glutamate synthase [NADPH] large chain; oxidoreductase, iron sulphur flavoprotein; HET: OMT FMN AKG; 3.0A {Azospirillum brasilense} SCOP: b.80.4.1 c.1.4.1 d.153.1.1 PDB: 2vdc_A* Length = 1479

 Score = 70.2 bits (173), Expect = 1e-14
 Identities = 15/44 (34%), Positives = 25/44 (56%)

Query: 139 IIEDAEKLSMRMNHRGACACDNDSGDGAGVLVAIPHAFYIQKLR 182
           ++E   +    + HRGA   D  +GDGAG+ VA+P  F+   ++
Sbjct: 17  VVEKGIEALKAVWHRGAVDADGKTGDGAGIHVAVPQKFFKDHVK 60

>1ofd_A Ferredoxin-dependent glutamate synthase 2; oxidoreductase, complex enzyme, substrate channeling, amidotransferase, flavoprotein, iron-sulphur; HET: FMN AKG; 2.00A {Synechocystis SP} SCOP: b.80.4.1 c.1.4.1 d.153.1.1 PDB: 1llz_A* 1lm1_A* 1llw_A* 1ofe_A* Length = 1520

 Score =  107 bits (270), Expect = 1e-27
 Identities = 25/82 (30%), Positives = 46/82 (56%), Gaps = 5/82 (6%)

Query: 59  SAGIGEVARNSEPFMRQVFLTGKQ--DEEEFKRQIYVLRKVSTHKIPKPGQRFYICSLSN 116
           S  +G  A+N++P + Q+ +T  +    +E  R++Y+ R +   K+    + FY+CS S 
Sbjct: 114 SDVLGIQAKNNQPHIEQILVTCPEGCAGDELDRRLYIARSIIGKKL---AEDFYVCSFSC 170

Query: 117 RIVVYKGQFTADQLWKYFTDLN 138
           R +VYKG   +  L +++ DL 
Sbjct: 171 RTIVYKGMVRSIILGEFYLDLK 192

>1ofd_A Ferredoxin-dependent glutamate synthase 2; oxidoreductase, complex enzyme, substrate channeling, amidotransferase, flavoprotein, iron-sulphur; HET: FMN AKG; 2.00A {Synechocystis SP} SCOP: b.80.4.1 c.1.4.1 d.153.1.1 PDB: 1llz_A* 1lm1_A* 1llw_A* 1ofe_A* Length = 1520

 Score = 59.9 bits (146), Expect = 4e-11
 Identities = 22/44 (50%), Positives = 26/44 (59%)

Query: 139 IIEDAEKLSMRMNHRGACACDNDSGDGAGVLVAIPHAFYIQKLR 182
           ++E A K    M HRG C+ DNDSGDGAGV+ AIP     Q   
Sbjct: 17  LVEQALKALGCMEHRGGCSADNDSGDGAGVMTAIPRELLAQWFN 60

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	182
1ofd_A	1520	Ferredoxin-dependent glutamate synthase 2; oxidore	99.98
1ea0_A	1479	Glutamate synthase [NADPH] large chain; oxidoreduc	99.97
1ofd_A	1520	Ferredoxin-dependent glutamate synthase 2; oxidore	98.03
1ea0_A	1479	Glutamate synthase [NADPH] large chain; oxidoreduc	97.98
1xff_A	240	D-fructose-6-, glucosamine--fructose-6-phosphate a	96.67
1ecf_A	504	Glutamine phosphoribosylpyrophosphate amidotransf;	94.81
2bpl_A	608	Glucosamine--fructose-6-phosphate aminotransferase	93.77
1ao0_A	459	Glutamine phosphoribosylpyrophosphate amidotransfe	91.51

>1ofd_A Ferredoxin-dependent glutamate synthase 2; oxidoreductase, complex enzyme, substrate channeling, amidotransferase, flavoprotein, iron-sulphur; HET: FMN AKG; 2.00A {Synechocystis SP} SCOP: b.80.4.1 c.1.4.1 d.153.1.1 PDB: 1llz_A* 1lm1_A* 1llw_A* 1ofe_A*

Probab=99.98  E-value=9.5e-34  Score=286.04  Aligned_cols=111  Identities=25%  Similarity=0.430  Sum_probs=103.8

Q ss_pred             cccChhHHhcCCceEEEEEcCC--CChHHHHHHHHHHHHHHhhhcCCCCCceEEeccCCcceeeecccChhchhhhhhhh
Q psy12804         60 AGIGEVARNSEPFMRQVFLTGK--QDEEEFKRQIYVLRKVSTHKIPKPGQRFYICSLSNRIVVYKGQFTADQLWKYFTDL  137 (182)
Q Consensus        60 ~~LG~~A~~t~P~I~Qvfv~~~--~~~~~fEr~Ly~~Rk~iE~~~~~~~~~fYi~SLSsrTIVYKGml~~~qL~~yY~DL  137 (182)
                      ++||+.|++++|.|||+||.++  .+..+|||+||.+|+++|+...   .+|||||||++|+|||||+++.||..||+||
T Consensus       115 ~~lg~~a~~~~P~i~Q~fv~~~~~~~~~~~~r~ly~~r~~le~~~~---~~~yI~S~s~~~~vyKgmgl~~~v~~~y~dL  191 (1520)
T 1ofd_A          115 DVLGIQAKNNQPHIEQILVTCPEGCAGDELDRRLYIARSIIGKKLA---EDFYVCSFSCRTIVYKGMVRSIILGEFYLDL  191 (1520)
T ss_dssp             GGSCHHHHHHCCEEEEEEEECTTCCCHHHHHHHHHHHHHHHGGGCB---TTBEEEEEESSEEEEEESSCHHHHHHHBHHH
T ss_pred             cccChHHHhCCCceEEEEEECCCCcchhhHHHHHHHHHHHHHhhcc---CCEEEEEecCcEEEEeCCccHHHHhhhhhhc
Confidence            8999999999999999999654  3456899999999999999873   3699999999999999999999999999999


Q ss_pred             ccchHHHHHHHhhhccccccCCCCCCCcccccccccHH
Q psy12804        138 NIIEDAEKLSMRMNHRGACACDNDSGDGAGVLVAIPHA  175 (182)
Q Consensus       138 qdp~~~Sa~a~~m~HRr~~~~~~~~gDgagil~~iph~  175 (182)
                      +|++|++++|  +.|.||||||.++|.+||||+.|+||
T Consensus       192 ~~~~~~g~~a--igH~RySTnt~p~w~~AQPf~~LaHN  227 (1520)
T 1ofd_A          192 KNPGYTSNFA--VYHRRFSTNTMPKWPLAQPMRLLGHN  227 (1520)
T ss_dssp             HCTTCCBSEE--EEEECCCSSSCCCGGGSSCCSSEEEE
T ss_pred             cccccceeEE--EEEccccCCCCCCcccCCchheeEec
Confidence            9999999977  99999999999999999999999997

>1ea0_A Glutamate synthase [NADPH] large chain; oxidoreductase, iron sulphur flavoprotein; HET: OMT FMN AKG; 3.0A {Azospirillum brasilense} SCOP: b.80.4.1 c.1.4.1 d.153.1.1 PDB: 2vdc_A*

Probab=99.97  E-value=4.8e-33  Score=280.49  Aligned_cols=114  Identities=26%  Similarity=0.429  Sum_probs=103.6

Q ss_pred             cccChhHHhcCCceEEEEEcCC--CChHHHHHHHHHHHHHHhhhcCC-CCCceEEeccCCcceeeecccChhchhhhhhh
Q psy12804         60 AGIGEVARNSEPFMRQVFLTGK--QDEEEFKRQIYVLRKVSTHKIPK-PGQRFYICSLSNRIVVYKGQFTADQLWKYFTD  136 (182)
Q Consensus        60 ~~LG~~A~~t~P~I~Qvfv~~~--~~~~~fEr~Ly~~Rk~iE~~~~~-~~~~fYi~SLSsrTIVYKGml~~~qL~~yY~D  136 (182)
                      ++||+.|++++|.|||+||..+  .+..+|||+||.+|+++|+.... ...+|||||||++|+|||||+++.||..||+|
T Consensus       115 ~~lg~~a~~~~P~i~Q~fv~~~~~~~~~~~~r~ly~~r~~le~~~~~~~~~~~yi~Sls~~~~vyKGmgl~~~v~~~y~d  194 (1479)
T 1ea0_A          115 DIIGEKANATRPEIEQIIVGNNKGVSDEQFELDLYIIRRRIEKAVKGEQINDFYICSLSARSIIYKGMFLAEQLTTFYPD  194 (1479)
T ss_dssp             GGSCHHHHHHCCEEEEEEEECTTCCCHHHHHHHHHHHHHHHHHHHHHHTCCSCEEEEEESSEEECCBSSCGGGHHHHCGG
T ss_pred             hhcChhHHhCCCceEEEEEECCCCcchhhHHHHHHHHHHHHHHhhhhccCCcEEEEEecCcEEEEecCcCHHHhhhhhhh
Confidence            8899999999999999999654  24568999999999999997621 01269999999999999999999999999999


Q ss_pred             hccchHHHHHHHhhhccccccCCCCCCCcccccccccHH
Q psy12804        137 LNIIEDAEKLSMRMNHRGACACDNDSGDGAGVLVAIPHA  175 (182)
Q Consensus       137 Lqdp~~~Sa~a~~m~HRr~~~~~~~~gDgagil~~iph~  175 (182)
                      |+|++|++++|  +.|.||||||.++|.+||||+.|+||
T Consensus       195 L~d~~~~g~~a--igH~RySTnt~p~w~~AQPf~~laHN  231 (1479)
T 1ea0_A          195 LLDERFESDFA--IYHQRYSTNTFPTWPLAQPFRMLAHN  231 (1479)
T ss_dssp             GGSTTCCBSEE--EEEECCCSCSCCCSTTSSCCSSEEEE
T ss_pred             hcccccceeEE--EeeecccCCCCCCcccCCccEEEEEC
Confidence            99999999977  99999999999999999999999997

>1ofd_A Ferredoxin-dependent glutamate synthase 2; oxidoreductase, complex enzyme, substrate channeling, amidotransferase, flavoprotein, iron-sulphur; HET: FMN AKG; 2.00A {Synechocystis SP} SCOP: b.80.4.1 c.1.4.1 d.153.1.1 PDB: 1llz_A* 1lm1_A* 1llw_A* 1ofe_A*

Probab=98.03  E-value=1.7e-06  Score=88.65  Aligned_cols=35  Identities=54%  Similarity=0.893  Sum_probs=32.5

Q ss_pred             HHhhhccccccCCCCCCCcccccccccHHHHHhhh
Q psy12804        147 SMRMNHRGACACDNDSGDGAGVLVAIPHAFYIQKL  181 (182)
Q Consensus       147 a~~m~HRr~~~~~~~~gDgagil~~iph~~~~~~~  181 (182)
                      ..+|.|||++++++++||||||+++|||.||++++
T Consensus        25 L~~m~HRG~~~ad~~tGDGaGil~~iP~~f~~~~~   59 (1520)
T 1ofd_A           25 LGCMEHRGGCSADNDSGDGAGVMTAIPRELLAQWF   59 (1520)
T ss_dssp             HHHTGGGSCBCTTSSSBSCEEEEEECCHHHHHHHH
T ss_pred             HHhccccCcccCCCCCCCceeeeccCCHHHHHHHH
Confidence            35899999999999999999999999999999864

>1ea0_A Glutamate synthase [NADPH] large chain; oxidoreductase, iron sulphur flavoprotein; HET: OMT FMN AKG; 3.0A {Azospirillum brasilense} SCOP: b.80.4.1 c.1.4.1 d.153.1.1 PDB: 2vdc_A*

Probab=97.98  E-value=2.1e-06  Score=87.84  Aligned_cols=35  Identities=40%  Similarity=0.758  Sum_probs=32.6

Q ss_pred             HHhhhccccccCCCCCCCcccccccccHHHHHhhh
Q psy12804        147 SMRMNHRGACACDNDSGDGAGVLVAIPHAFYIQKL  181 (182)
Q Consensus       147 a~~m~HRr~~~~~~~~gDgagil~~iph~~~~~~~  181 (182)
                      ..+|.|||++++++++||||||+++|||.||++++
T Consensus        25 L~~m~HRG~~~ad~~tGDGaGil~~iP~~f~~~~~   59 (1479)
T 1ea0_A           25 LKAVWHRGAVDADGKTGDGAGIHVAVPQKFFKDHV   59 (1479)
T ss_dssp             HTSCGGGSCCCTTSSCCSCBCEEEECCHHHHHHHH
T ss_pred             HHhccccCccCCCCCCCCceeeeccCCHHHHHHHH
Confidence            35899999999999999999999999999999865

>1xff_A D-fructose-6-, glucosamine--fructose-6-phosphate aminotransferase [isomerizing]; complex (transferase/inhibitor), glutamine amidotransferase; HET: GLU; 1.80A {Escherichia coli} SCOP: d.153.1.1 PDB: 1xfg_A*

Probab=96.67  E-value=0.00047  Score=56.84  Aligned_cols=76  Identities=7%  Similarity=-0.110  Sum_probs=59.4

Q ss_pred             HHHHHHHHHHhhhcCCCCCceEEeccCCcceeeecccChhchhhhhhhhccchHHHHHHHhhhccccccCCCCCCCcccc
Q psy12804         89 RQIYVLRKVSTHKIPKPGQRFYICSLSNRIVVYKGQFTADQLWKYFTDLNIIEDAEKLSMRMNHRGACACDNDSGDGAGV  168 (182)
Q Consensus        89 r~Ly~~Rk~iE~~~~~~~~~fYi~SLSsrTIVYKGml~~~qL~~yY~DLqdp~~~Sa~a~~m~HRr~~~~~~~~gDgagi  168 (182)
                      ..|+...++++++-.+ ...+++++-+.+..+||++....+|..   ++..+.+.+.++  +.|.|.+|...+++.++||
T Consensus        14 ~~l~~~l~~l~~RG~D-~~Gi~~~~~~~~~~~~k~~g~~~~~~~---~~~~~~~~~~~~--igH~R~at~g~~~~~n~qP   87 (240)
T 1xff_A           14 EILLEGLRRLEYRGYD-SAGLAVVDAEGHMTRLRRLGKVQMLAQ---AAEEHPLHGGTG--IAHTRWATHGEPSEVNAHP   87 (240)
T ss_dssp             HHHHHHHHHHGGGCCS-EEEEEEECTTCCEEEEEEESCHHHHHH---HHHHSCCCCSEE--EEEEECCSSSCSSTTTSSC
T ss_pred             HHHHHHHHHHHhcCCC-cCCEEEEecCCcEEEEEcCCcHHHHHh---hhhcccCCccEE--EEEEeccCCCCCCcccCCC
Confidence            4577888889987643 234665667889999999999888754   566667777755  8899999988788899999


Q ss_pred             cc
Q psy12804        169 LV  170 (182)
Q Consensus       169 l~  170 (182)
                      ++
T Consensus        88 ~~   89 (240)
T 1xff_A           88 HV   89 (240)
T ss_dssp             EE
T ss_pred             cc
Confidence            97

>1ecf_A Glutamine phosphoribosylpyrophosphate amidotransf; purine biosynthesis, transferase, glycosyltransferase, gluta amidotransferase; HET: PIN; 2.00A {Escherichia coli} SCOP: c.61.1.1 d.153.1.1 PDB: 1ecb_A* 1ecc_A* 1ecg_A* 1ecj_A*

Probab=94.81  E-value=0.0064  Score=55.48  Aligned_cols=76  Identities=13%  Similarity=0.097  Sum_probs=58.6

Q ss_pred             HHHHHHHHHHhhhcCCCCCceEEeccCCcceeeecccChhchhhhhhhhccchHHHHHHHhhhccccccCCCCCCCcccc
Q psy12804         89 RQIYVLRKVSTHKIPKPGQRFYICSLSNRIVVYKGQFTADQLWKYFTDLNIIEDAEKLSMRMNHRGACACDNDSGDGAGV  168 (182)
Q Consensus        89 r~Ly~~Rk~iE~~~~~~~~~fYi~SLSsrTIVYKGml~~~qL~~yY~DLqdp~~~Sa~a~~m~HRr~~~~~~~~gDgagi  168 (182)
                      ..||.....++++-.+. .++++.+...+..+||++....+   +|.++..+.+.+.++  +.|.|.+|...+++.+|||
T Consensus        14 ~~l~~~l~~LqhRG~D~-aGi~~~~~~~~~~~~k~~g~v~~---vf~~~~~~~l~g~~~--igH~R~sT~G~~~~~n~QP   87 (504)
T 1ecf_A           14 QSIYDALTVLQHRGQDA-AGIITIDANNCFRLRKANGLVSD---VFEARHMQRLQGNMG--IGHVRYPTAGSSSASEAQP   87 (504)
T ss_dssp             HHHHHHHHHTGGGCCSE-EEEEEECTTSCEEEEEEESCHHH---HCCHHHHHHCCSSEE--EEEEECCBTTBCTTSCCSC
T ss_pred             HHHHHHHHHHHhcCCCc-ceEEEEcCCCcEEEEecCCchhh---hcCccccccCCCCEE--EEEEccCcCCCCCccccCC
Confidence            35788888888875431 24666666778999999988654   677777677777766  8899999998888899999


Q ss_pred             cc
Q psy12804        169 LV  170 (182)
Q Consensus       169 l~  170 (182)
                      +.
T Consensus        88 ~~   89 (504)
T 1ecf_A           88 FY   89 (504)
T ss_dssp             EE
T ss_pred             eE
Confidence            97

>2bpl_A Glucosamine--fructose-6-phosphate aminotransferase [isomerizing]; amidotransferase, ammonia channeling, glucosamine 6- phosphate synthase; HET: F6R; 2.05A {Escherichia coli} SCOP: c.80.1.1 d.153.1.1 PDB: 1jxa_A* 2j6h_A* 2vf4_X 2vf5_X* 3ooj_A*

Probab=93.77  E-value=0.016  Score=53.71  Aligned_cols=76  Identities=7%  Similarity=-0.117  Sum_probs=58.5

Q ss_pred             HHHHHHHHHHhhhcCCCCCceEEeccCCcceeeecccChhchhhhhhhhccchHHHHHHHhhhccccccCCCCCCCcccc
Q psy12804         89 RQIYVLRKVSTHKIPKPGQRFYICSLSNRIVVYKGQFTADQLWKYFTDLNIIEDAEKLSMRMNHRGACACDNDSGDGAGV  168 (182)
Q Consensus        89 r~Ly~~Rk~iE~~~~~~~~~fYi~SLSsrTIVYKGml~~~qL~~yY~DLqdp~~~Sa~a~~m~HRr~~~~~~~~gDgagi  168 (182)
                      ..|+...++++++-.+. .++++.+-+.+..+||++....+|.   .+|.++.+.+.++  +.|.|.+|...+++.++||
T Consensus        14 ~~l~~~l~~l~~RG~D~-~Gi~~~~~~~~~~~~k~~g~~~~l~---~~l~~~~~~~~~~--igH~R~at~g~~~~~n~qP   87 (608)
T 2bpl_A           14 EILLEGLRRLEYRGYDS-AGLAVVDAEGHMTRLRRLGKVQMLA---QAAEEHPLHGGTG--IAHTRWATHGEPSEVNAHP   87 (608)
T ss_dssp             HHHHHHHHHHGGGCCSE-EEEEEECTTCCEEEEEEESSHHHHH---HHHHHSCCCCSEE--EEEEECCCSSSCCGGGCSC
T ss_pred             HHHHHHHHHHHhcCCCc-CceEEEecCCcEEEEeCCCcHHHHH---HHhhccCCCCCEE--EEEEccCCCCCCCccCCCC
Confidence            35778888899876431 2466654577899999999998884   4666666777755  8899999888788889999


Q ss_pred             cc
Q psy12804        169 LV  170 (182)
Q Consensus       169 l~  170 (182)
                      ++
T Consensus        88 ~~   89 (608)
T 2bpl_A           88 HV   89 (608)
T ss_dssp             EE
T ss_pred             cc
Confidence            97

>1ao0_A Glutamine phosphoribosylpyrophosphate amidotransferase; glutamine amidotransferase, prtase, purine biosynthesis, phosphoribosyltransferase; HET: 5GP ADP; 2.80A {Bacillus subtilis} SCOP: c.61.1.1 d.153.1.1 PDB: 1gph_1*

Probab=91.51  E-value=0.04  Score=49.49  Aligned_cols=76  Identities=12%  Similarity=0.104  Sum_probs=51.3

Q ss_pred             HHHHHHHHHHhhhcCCCCCceEEeccCCcceeeecccChhchhhhhhhhccchHHHHHHHhhhccccccCCCCCCCcccc
Q psy12804         89 RQIYVLRKVSTHKIPKPGQRFYICSLSNRIVVYKGQFTADQLWKYFTDLNIIEDAEKLSMRMNHRGACACDNDSGDGAGV  168 (182)
Q Consensus        89 r~Ly~~Rk~iE~~~~~~~~~fYi~SLSsrTIVYKGml~~~qL~~yY~DLqdp~~~Sa~a~~m~HRr~~~~~~~~gDgagi  168 (182)
                      ..+|...+.++++-.+. .++++.+ +.+..+||++....++.. ..+|.  .+.+.++  +.|.|.+|...+++.++||
T Consensus        14 ~~~~~~l~~L~hRG~D~-~Gi~~~~-~~~~~~~k~~g~v~~~~~-~~~l~--~l~g~~~--igH~R~at~g~~~~~n~qP   86 (459)
T 1ao0_A           14 QITYYGLHSLQHRGQEG-AGIVATD-GEKLTAHKGQGLITEVFQ-NGELS--KVKGKGA--IGHVRYATAGGGGYENVQP   86 (459)
T ss_dssp             HHHHHHHHHTGGGCCSE-EEEEEEC-SSCEEEEEEESCHHHHTT-SSCTT--TCCBSEE--EEEEECCC----CGGGSSS
T ss_pred             HHHHHHHHHHHhcCCCc-CCEEEEe-CCeEEEEecCCcHhhhcc-hhhhh--ccCCCEE--EEEEecCCCCCCCccCCCC
Confidence            34666677888865431 2356554 568899999998887764 34554  4566655  8899999888777889999


Q ss_pred             ccc
Q psy12804        169 LVA  171 (182)
Q Consensus       169 l~~  171 (182)
                      +..
T Consensus        87 ~~~   89 (459)
T 1ao0_A           87 LLF   89 (459)
T ss_dssp             EEE
T ss_pred             cee
Confidence            974

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	182
d1ea0a3	422	d.153.1.1 (A:1-422) Alpha subunit of glutamate syn	2e-14
d1ea0a3	422	d.153.1.1 (A:1-422) Alpha subunit of glutamate syn	1e-12
d1ofda3	430	d.153.1.1 (A:1-430) Alpha subunit of glutamate syn	5e-14
d1ofda3	430	d.153.1.1 (A:1-430) Alpha subunit of glutamate syn	6e-12

>d1ea0a3 d.153.1.1 (A:1-422) Alpha subunit of glutamate synthase, N-terminal domain {Azospirillum brasilense [TaxId: 192]} Length = 422

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Class II glutamine amidotransferases
domain: Alpha subunit of glutamate synthase, N-terminal domain
species: Azospirillum brasilense [TaxId: 192]

 Score = 68.1 bits (166), Expect = 2e-14
 Identities = 15/44 (34%), Positives = 25/44 (56%)

Query: 139 IIEDAEKLSMRMNHRGACACDNDSGDGAGVLVAIPHAFYIQKLR 182
           ++E   +    + HRGA   D  +GDGAG+ VA+P  F+   ++
Sbjct: 17  VVEKGIEALKAVWHRGAVDADGKTGDGAGIHVAVPQKFFKDHVK 60

>d1ea0a3 d.153.1.1 (A:1-422) Alpha subunit of glutamate synthase, N-terminal domain {Azospirillum brasilense [TaxId: 192]} Length = 422

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Class II glutamine amidotransferases
domain: Alpha subunit of glutamate synthase, N-terminal domain
species: Azospirillum brasilense [TaxId: 192]

 Score = 62.7 bits (152), Expect = 1e-12
 Identities = 30/111 (27%), Positives = 53/111 (47%), Gaps = 5/111 (4%)

Query: 46  GFIVAIDRKRSHKSAGIGEVARNSEPFMRQVFLTG--KQDEEEFKRQIYVLRKVSTHKIP 103
           G+ +   R+       IGE A  + P + Q+ +       +E+F+  +Y++R+     + 
Sbjct: 101 GYYIYGWRQVPINVDIIGEKANATRPEIEQIIVGNNKGVSDEQFELDLYIIRRRIEKAVK 160

Query: 104 KPG-QRFYICSLSNRIVVYKGQFTADQLWKYFTDLNIIEDAEKLSMRMNHR 153
                 FYICSLS R ++YKG F A+QL  ++    + E  E     + H+
Sbjct: 161 GEQINDFYICSLSARSIIYKGMFLAEQLTTFY-PDLLDERFES-DFAIYHQ 209

>d1ofda3 d.153.1.1 (A:1-430) Alpha subunit of glutamate synthase, N-terminal domain {Synechocystis sp. [TaxId: 1143]} Length = 430

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Class II glutamine amidotransferases
domain: Alpha subunit of glutamate synthase, N-terminal domain
species: Synechocystis sp. [TaxId: 1143]

 Score = 66.6 bits (162), Expect = 5e-14
 Identities = 22/44 (50%), Positives = 26/44 (59%)

Query: 139 IIEDAEKLSMRMNHRGACACDNDSGDGAGVLVAIPHAFYIQKLR 182
           ++E A K    M HRG C+ DNDSGDGAGV+ AIP     Q   
Sbjct: 17  LVEQALKALGCMEHRGGCSADNDSGDGAGVMTAIPRELLAQWFN 60

>d1ofda3 d.153.1.1 (A:1-430) Alpha subunit of glutamate synthase, N-terminal domain {Synechocystis sp. [TaxId: 1143]} Length = 430

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Class II glutamine amidotransferases
domain: Alpha subunit of glutamate synthase, N-terminal domain
species: Synechocystis sp. [TaxId: 1143]

 Score = 60.8 bits (147), Expect = 6e-12
 Identities = 30/112 (26%), Positives = 53/112 (47%), Gaps = 5/112 (4%)

Query: 28  PAASGLYDPANEREACGVGFIVAIDRKRSHKSAGIGEVARNSEPFMRQVFLTG--KQDEE 85
           P+A  +     E         V   R+    S  +G  A+N++P + Q+ +T       +
Sbjct: 83  PSAREVARAYVEEVVRLEKLTVLGWREVPVNSDVLGIQAKNNQPHIEQILVTCPEGCAGD 142

Query: 86  EFKRQIYVLRKVSTHKIPKPGQRFYICSLSNRIVVYKGQFTADQLWKYFTDL 137
           E  R++Y+ R +   K+    + FY+CS S R +VYKG   +  L +++ DL
Sbjct: 143 ELDRRLYIARSIIGKKL---AEDFYVCSFSCRTIVYKGMVRSIILGEFYLDL 191

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	182
d1ea0a3	422	Alpha subunit of glutamate synthase, N-terminal do	100.0
d1ofda3	430	Alpha subunit of glutamate synthase, N-terminal do	100.0
d1ofda3	430	Alpha subunit of glutamate synthase, N-terminal do	98.74
d1ea0a3	422	Alpha subunit of glutamate synthase, N-terminal do	98.71

>d1ea0a3 d.153.1.1 (A:1-422) Alpha subunit of glutamate synthase, N-terminal domain {Azospirillum brasilense [TaxId: 192]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Class II glutamine amidotransferases
domain: Alpha subunit of glutamate synthase, N-terminal domain
species: Azospirillum brasilense [TaxId: 192]

Probab=100.00  E-value=3.4e-48  Score=350.03  Aligned_cols=114  Identities=26%  Similarity=0.429  Sum_probs=106.2

Q ss_pred             cccChhHHhcCCceEEEEEcCC--CChHHHHHHHHHHHHHHhhhcCCC-CCceEEeccCCcceeeecccChhchhhhhhh
Q psy12804         60 AGIGEVARNSEPFMRQVFLTGK--QDEEEFKRQIYVLRKVSTHKIPKP-GQRFYICSLSNRIVVYKGQFTADQLWKYFTD  136 (182)
Q Consensus        60 ~~LG~~A~~t~P~I~Qvfv~~~--~~~~~fEr~Ly~~Rk~iE~~~~~~-~~~fYi~SLSsrTIVYKGml~~~qL~~yY~D  136 (182)
                      ++||+.|++++|.|+|+||.++  .++++|||+||++||++|+.+... ..+|||||||+||||||||++|+||.+||+|
T Consensus       115 ~~LG~~A~~~~P~i~Q~fv~~~~~~~~~~fEr~Ly~~Rk~~e~~~~~~~~~~fYi~SlSsrTIVYKGml~~~ql~~fy~D  194 (422)
T d1ea0a3         115 DIIGEKANATRPEIEQIIVGNNKGVSDEQFELDLYIIRRRIEKAVKGEQINDFYICSLSARSIIYKGMFLAEQLTTFYPD  194 (422)
T ss_dssp             GGSCHHHHHHCCEEEEEEEECTTCCCHHHHHHHHHHHHHHHHHHHHHHTCCSCEEEEEESSEEECCBSSCGGGHHHHCGG
T ss_pred             ccccchhhhcCchheeeeeecCCCCCHHHHHHHHHHHHHHHHHHHhhcccCCceecccccceeeeeccccHHHHHhhhhc
Confidence            8999999999999999999765  467899999999999999977522 2469999999999999999999999999999


Q ss_pred             hccchHHHHHHHhhhccccccCCCCCCCcccccccccHH
Q psy12804        137 LNIIEDAEKLSMRMNHRGACACDNDSGDGAGVLVAIPHA  175 (182)
Q Consensus       137 Lqdp~~~Sa~a~~m~HRr~~~~~~~~gDgagil~~iph~  175 (182)
                      |+||+|+|++|  ++|+||||||.|+|++|||+|.|+||
T Consensus       195 L~d~~~~s~~a--l~H~RFSTNT~PsW~lAQPFR~laHN  231 (422)
T d1ea0a3         195 LLDERFESDFA--IYHQRYSTNTFPTWPLAQPFRMLAHN  231 (422)
T ss_dssp             GGSTTCCBSEE--EEEECCCSCSCCCSTTSSCCSSEEEE
T ss_pred             ccCcccEEEEE--EEEeeeeccCCCchhhcCceeeecCC
Confidence            99999999988  99999999999999999999999997

>d1ofda3 d.153.1.1 (A:1-430) Alpha subunit of glutamate synthase, N-terminal domain {Synechocystis sp. [TaxId: 1143]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Class II glutamine amidotransferases
domain: Alpha subunit of glutamate synthase, N-terminal domain
species: Synechocystis sp. [TaxId: 1143]

Probab=100.00  E-value=3e-47  Score=344.51  Aligned_cols=111  Identities=25%  Similarity=0.430  Sum_probs=105.5

Q ss_pred             cccChhHHhcCCceEEEEEcCC--CChHHHHHHHHHHHHHHhhhcCCCCCceEEeccCCcceeeecccChhchhhhhhhh
Q psy12804         60 AGIGEVARNSEPFMRQVFLTGK--QDEEEFKRQIYVLRKVSTHKIPKPGQRFYICSLSNRIVVYKGQFTADQLWKYFTDL  137 (182)
Q Consensus        60 ~~LG~~A~~t~P~I~Qvfv~~~--~~~~~fEr~Ly~~Rk~iE~~~~~~~~~fYi~SLSsrTIVYKGml~~~qL~~yY~DL  137 (182)
                      ++||+.|++++|.|+|+||.++  .+.++|||+||++||++|+.+.   .+|||||||+||||||||++|+||.+||+||
T Consensus       115 ~~lG~~A~~~~P~i~Qvfv~~~~~~~~~~~er~L~~~Rk~~~~~~~---~~fYi~SlSsrTIVYKGml~~~ql~~fy~DL  191 (430)
T d1ofda3         115 DVLGIQAKNNQPHIEQILVTCPEGCAGDELDRRLYIARSIIGKKLA---EDFYVCSFSCRTIVYKGMVRSIILGEFYLDL  191 (430)
T ss_dssp             GGSCHHHHHHCCEEEEEEEECTTCCCHHHHHHHHHHHHHHHGGGCB---TTBEEEEEESSEEEEEESSCHHHHHHHBHHH
T ss_pred             cccchHHHhcccceeeEEecCCcCCchHHHHHHHHHHHHHHHHHhh---cCceEEecccCeEEEeccccHHHHHHHhhcc
Confidence            8999999999999999999766  4678999999999999999875   3699999999999999999999999999999


Q ss_pred             ccchHHHHHHHhhhccccccCCCCCCCcccccccccHH
Q psy12804        138 NIIEDAEKLSMRMNHRGACACDNDSGDGAGVLVAIPHA  175 (182)
Q Consensus       138 qdp~~~Sa~a~~m~HRr~~~~~~~~gDgagil~~iph~  175 (182)
                      +||+|+|++|  ++|+||||||.|+|++|||||.|+||
T Consensus       192 ~d~~~~s~~a--l~H~RFSTNT~PsW~lAQPfR~laHN  227 (430)
T d1ofda3         192 KNPGYTSNFA--VYHRRFSTNTMPKWPLAQPMRLLGHN  227 (430)
T ss_dssp             HCTTCCBSEE--EEEECCCSSSCCCGGGSSCCSSEEEE
T ss_pred             cCcccEEEEE--EEEEEEecCCCCcchhcCccccccCC
Confidence            9999999988  99999999999999999999999997

>d1ofda3 d.153.1.1 (A:1-430) Alpha subunit of glutamate synthase, N-terminal domain {Synechocystis sp. [TaxId: 1143]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Class II glutamine amidotransferases
domain: Alpha subunit of glutamate synthase, N-terminal domain
species: Synechocystis sp. [TaxId: 1143]

Probab=98.74  E-value=1.5e-09  Score=96.88  Aligned_cols=35  Identities=54%  Similarity=0.893  Sum_probs=32.5

Q ss_pred             HHhhhccccccCCCCCCCcccccccccHHHHHhhh
Q psy12804        147 SMRMNHRGACACDNDSGDGAGVLVAIPHAFYIQKL  181 (182)
Q Consensus       147 a~~m~HRr~~~~~~~~gDgagil~~iph~~~~~~~  181 (182)
                      ..+|.|||++++++++|||||||++|||+||++++
T Consensus        25 L~~m~HRGa~gaD~~tGDGAGIL~qIP~~ff~~~~   59 (430)
T d1ofda3          25 LGCMEHRGGCSADNDSGDGAGVMTAIPRELLAQWF   59 (430)
T ss_dssp             HHHTGGGSCBCTTSSSBSCEEEEEECCHHHHHHHH
T ss_pred             HccCCCcCccCCCCCCccceeEeecCCHHHHHHHH
Confidence            35899999999999999999999999999999865

>d1ea0a3 d.153.1.1 (A:1-422) Alpha subunit of glutamate synthase, N-terminal domain {Azospirillum brasilense [TaxId: 192]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Class II glutamine amidotransferases
domain: Alpha subunit of glutamate synthase, N-terminal domain
species: Azospirillum brasilense [TaxId: 192]

Probab=98.71  E-value=1.6e-09  Score=96.31  Aligned_cols=35  Identities=40%  Similarity=0.758  Sum_probs=32.5

Q ss_pred             HHhhhccccccCCCCCCCcccccccccHHHHHhhh
Q psy12804        147 SMRMNHRGACACDNDSGDGAGVLVAIPHAFYIQKL  181 (182)
Q Consensus       147 a~~m~HRr~~~~~~~~gDgagil~~iph~~~~~~~  181 (182)
                      ..+|.|||++++++++|||||||++|||+||++++
T Consensus        25 L~~m~HRGa~gaD~~tGDGAGIl~qIP~~ff~~~~   59 (422)
T d1ea0a3          25 LKAVWHRGAVDADGKTGDGAGIHVAVPQKFFKDHV   59 (422)
T ss_dssp             HTSCGGGSCCCTTSSCCSCBCEEEECCHHHHHHHH
T ss_pred             HhcCCCCCCcCCCCCCCCcceEeccCCHHHHHHHH
Confidence            35899999999999999999999999999999865