Psyllid ID: psy12840
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 469 | ||||||
| 340723323 | 557 | PREDICTED: uncharacterized glycosyltrans | 0.946 | 0.797 | 0.555 | 1e-168 | |
| 350403304 | 557 | PREDICTED: uncharacterized glycosyltrans | 0.946 | 0.797 | 0.553 | 1e-167 | |
| 380021314 | 560 | PREDICTED: uncharacterized glycosyltrans | 0.946 | 0.792 | 0.563 | 1e-165 | |
| 328779613 | 560 | PREDICTED: uncharacterized glycosyltrans | 0.946 | 0.792 | 0.563 | 1e-163 | |
| 307208002 | 556 | Uncharacterized glycosyltransferase AER6 | 0.944 | 0.796 | 0.540 | 1e-156 | |
| 193632082 | 499 | PREDICTED: uncharacterized glycosyltrans | 0.918 | 0.863 | 0.500 | 1e-138 | |
| 312377513 | 533 | hypothetical protein AND_11153 [Anophele | 0.970 | 0.853 | 0.463 | 1e-135 | |
| 321478050 | 537 | hypothetical protein DAPPUDRAFT_304713 [ | 0.904 | 0.789 | 0.478 | 1e-131 | |
| 195114314 | 514 | GI15496 [Drosophila mojavensis] gi|19391 | 0.963 | 0.879 | 0.473 | 1e-130 | |
| 56550362 | 520 | glycosyltransferase [Drosophila yakuba] | 0.970 | 0.875 | 0.472 | 1e-130 |
| >gi|340723323|ref|XP_003400040.1| PREDICTED: uncharacterized glycosyltransferase AER61-like [Bombus terrestris] | Back alignment and taxonomy information |
|---|
Score = 597 bits (1538), Expect = e-168, Method: Compositional matrix adjust.
Identities = 279/502 (55%), Positives = 348/502 (69%), Gaps = 58/502 (11%)
Query: 20 ITLSFHIGCSYGNAFDLDLHPEHLEYYFNYFPQTLDQCKDSSKCPYQGVVKTDRCWGYEP 79
I L F I +Y N ++DL P+H++YYFN FP ++C++++ CPY+ + T CWGYEP
Sbjct: 14 IVLVFAITQTYSNYTEIDLPPDHIKYYFNSFPTVAEECRNNTACPYKDSLDTKACWGYEP 73
Query: 80 HCNQHTAYSYPLCPGEHKGWVKSKAAQFDTFYRQADFGYVKEQREEMTVLCEPALAEDSS 139
+CN ++S P CPG+H+GWV +K AQ +TFY Q DFGYV++QR+EM++ C+P +DSS
Sbjct: 74 NCNAENSFSVPQCPGDHRGWVTTKKAQVETFYAQGDFGYVRDQRKEMSIFCKPLFVDDSS 133
Query: 140 LECSKHLRFCRGRNIFMDLTGLNTRKEPIRYKMDVLKHGQIGAV---------------- 183
LECS+H+RFCR RNI ++ T L RKEPIRYKMDVLK GQIG
Sbjct: 134 LECSEHMRFCRARNIMINFTDLIQRKEPIRYKMDVLKEGQIGGYCTLNEKRLQKNADHIS 193
Query: 184 ------------------NMYHHFCD------------------------FFNLYASQHV 201
+ +H CD FFNLYAS HV
Sbjct: 194 PLQSWGPELRNFRKLPRPPIVNHDCDIVIEKPTYIMKIDAIVNMYHHFCDFFNLYASLHV 253
Query: 202 NASHPDVFSTDVHIMIWESYTYASAFADTFRAFTRHPVWDLKTFTGLTVCFKNLVLPLLP 261
N SHP FSTD HIMIWESY+Y SAF D F+AFTR+P+WDL TF G TVCFKNLV PLLP
Sbjct: 254 NLSHPAAFSTDNHIMIWESYSYRSAFQDAFQAFTRNPLWDLHTFRGETVCFKNLVFPLLP 313
Query: 262 RMIYGLYYNTPLIWGCEKSGLMEAFSKHILHRLKVRRLRRKNSKVRITLLSRDTQYRNIL 321
RMI+GLYYNTPLI+GCEKSGL +AF H+LHRL+ RKN ++R+TLLSRDTQYR IL
Sbjct: 314 RMIFGLYYNTPLIYGCEKSGLFKAFGDHVLHRLRTPHHERKNQRIRVTLLSRDTQYRRIL 373
Query: 322 NEQELIEALSQEPSVKVKRVVYNRQMNFTKQLEKTYNSDILIGMHGAGLTHLMFLPDWAV 381
NE EL +AL + P KV++V+YN++++F KQLE T NSDI IG+HGAGLTHLMFLPDWA
Sbjct: 374 NEDELTKALKENPEYKVRKVIYNKKISFKKQLEITRNSDIFIGIHGAGLTHLMFLPDWAA 433
Query: 382 VFELYNCEDEHCYKDLARLRGIKYITWEDKSKLEPQDEGHHPNGGAHAKFTNYKFDVAEF 441
VFE+YNCED CYKDLARLRG+KY TWE+ S L QD G HP+GGAHAKFTNY FDV EF
Sbjct: 434 VFEIYNCEDPGCYKDLARLRGVKYFTWENASMLVQQDPGTHPDGGAHAKFTNYSFDVKEF 493
Query: 442 VRLVRRGVKHVKAHSKFQQYVA 463
+R+V + +VK H F+++++
Sbjct: 494 LRIVSQATDYVKNHDLFKRFIS 515
|
Source: Bombus terrestris Species: Bombus terrestris Genus: Bombus Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|350403304|ref|XP_003486762.1| PREDICTED: uncharacterized glycosyltransferase AER61-like [Bombus impatiens] | Back alignment and taxonomy information |
|---|
| >gi|380021314|ref|XP_003694514.1| PREDICTED: uncharacterized glycosyltransferase AER61-like [Apis florea] | Back alignment and taxonomy information |
|---|
| >gi|328779613|ref|XP_391981.3| PREDICTED: uncharacterized glycosyltransferase AER61-like [Apis mellifera] | Back alignment and taxonomy information |
|---|
| >gi|307208002|gb|EFN85561.1| Uncharacterized glycosyltransferase AER61 [Harpegnathos saltator] | Back alignment and taxonomy information |
|---|
| >gi|193632082|ref|XP_001951734.1| PREDICTED: uncharacterized glycosyltransferase AER61-like [Acyrthosiphon pisum] | Back alignment and taxonomy information |
|---|
| >gi|312377513|gb|EFR24326.1| hypothetical protein AND_11153 [Anopheles darlingi] | Back alignment and taxonomy information |
|---|
| >gi|321478050|gb|EFX89008.1| hypothetical protein DAPPUDRAFT_304713 [Daphnia pulex] | Back alignment and taxonomy information |
|---|
| >gi|195114314|ref|XP_002001712.1| GI15496 [Drosophila mojavensis] gi|193912287|gb|EDW11154.1| GI15496 [Drosophila mojavensis] | Back alignment and taxonomy information |
|---|
| >gi|56550362|emb|CAI30567.1| glycosyltransferase [Drosophila yakuba] | Back alignment and taxonomy information |
|---|
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 469 | ||||||
| FB|FBgn0264672 | 520 | Eogt "EGF-domain O-GlcNAc tran | 0.582 | 0.525 | 0.596 | 7.2e-124 | |
| UNIPROTKB|Q08CY9 | 525 | eogt "EGF domain-specific O-li | 0.579 | 0.518 | 0.573 | 1e-111 | |
| UNIPROTKB|Q5NDL2 | 527 | EOGT "EGF domain-specific O-li | 0.599 | 0.533 | 0.541 | 2.7e-109 | |
| UNIPROTKB|E1BQN4 | 530 | EOGT "EGF domain-specific O-li | 0.597 | 0.528 | 0.549 | 7.1e-109 | |
| RGD|1359357 | 527 | Eogt "EGF domain-specific O-li | 0.599 | 0.533 | 0.541 | 1.2e-108 | |
| UNIPROTKB|Q5NDL1 | 527 | EOGT "EGF domain-specific O-li | 0.599 | 0.533 | 0.541 | 1.2e-108 | |
| UNIPROTKB|F1SFQ3 | 527 | EOGT "Uncharacterized protein" | 0.599 | 0.533 | 0.531 | 3.1e-108 | |
| UNIPROTKB|F1NHC9 | 530 | EOGT "EGF domain-specific O-li | 0.597 | 0.528 | 0.553 | 3.9e-108 | |
| UNIPROTKB|Q5NDL3 | 535 | EOGT "EGF domain-specific O-li | 0.597 | 0.523 | 0.553 | 6.4e-108 | |
| UNIPROTKB|Q5NDL9 | 527 | EOGT "EGF domain-specific O-li | 0.579 | 0.516 | 0.548 | 6.4e-108 |
| FB|FBgn0264672 Eogt "EGF-domain O-GlcNAc transferase" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 875 (313.1 bits), Expect = 7.2e-124, Sum P(2) = 7.2e-124
Identities = 164/275 (59%), Positives = 192/275 (69%)
Query: 184 NMYHHFCDFFNLYASQHVNASHPDVFSTDVHIMIWESYTYASAFADTFRAFTRHPVWDLK 243
NMYHHFCDFFNLYAS VN SHP F+TDV I+IWE+Y Y S F DTF+AF++ PVW L
Sbjct: 232 NMYHHFCDFFNLYASLFVNQSHPAAFNTDVQILIWETYPYDSPFRDTFKAFSQRPVWTLS 291
Query: 244 TFTGLTVCFKNLVLPLLPRMIYGLYYNTPLIWGCEKSGLMEAFSXXXXXXXXXXXXXXXX 303
G VCFKN+VLPLLPRMI+GL+YNTP+I GC SGL AFS
Sbjct: 292 DVEGKRVCFKNVVLPLLPRMIFGLFYNTPIIQGCSNSGLFRAFSEFILHRLQIPYKPPQQ 351
Query: 304 XXXXXTLLSRDTQYRNILNEQELIEALSQEPSVKVKRVVYNRQMNFTKQLEKTYNSDILI 363
T LSR T+YR +LNE EL+ L V+RV Y R + FT QL T N+DILI
Sbjct: 352 KIRI-TYLSRRTKYRQVLNEDELLAPLEANDKYDVQRVSYER-LPFTNQLAITRNTDILI 409
Query: 364 GMHGAGLTHLMFLPDWAVVFELYNCEDEHCYKDLARLRGIKYITWEDKSKLEPQDEGHHP 423
GMHGAGLTHL+FLP+WA +FELYNCED +CYKDLARLRG++Y TWE + + PQDEGHHP
Sbjct: 410 GMHGAGLTHLLFLPNWACIFELYNCEDPNCYKDLARLRGVRYRTWEQRDLVYPQDEGHHP 469
Query: 424 NGGAHAKFTNYKFDVAEFVRLVRRGVKHVKAHSKF 458
GGAHAKFTNY FDV EFV LV + + +H +F
Sbjct: 470 EGGAHAKFTNYSFDVKEFVHLVDGAAEEILSHKEF 504
|
|
| UNIPROTKB|Q08CY9 eogt "EGF domain-specific O-linked N-acetylglucosamine transferase" [Xenopus (Silurana) tropicalis (taxid:8364)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|Q5NDL2 EOGT "EGF domain-specific O-linked N-acetylglucosamine transferase" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|E1BQN4 EOGT "EGF domain-specific O-linked N-acetylglucosamine transferase" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
| RGD|1359357 Eogt "EGF domain-specific O-linked N-acetylglucosamine (GlcNAc) transferase" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|Q5NDL1 EOGT "EGF domain-specific O-linked N-acetylglucosamine transferase" [Pan troglodytes (taxid:9598)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|F1SFQ3 EOGT "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|F1NHC9 EOGT "EGF domain-specific O-linked N-acetylglucosamine transferase" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|Q5NDL3 EOGT "EGF domain-specific O-linked N-acetylglucosamine transferase" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|Q5NDL9 EOGT "EGF domain-specific O-linked N-acetylglucosamine transferase" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 469 | |||
| pfam04577 | 206 | pfam04577, DUF563, Protein of unknown function (DU | 1e-17 |
| >gnl|CDD|218156 pfam04577, DUF563, Protein of unknown function (DUF563) | Back alignment and domain information |
|---|
Score = 81.3 bits (201), Expect = 1e-17
Identities = 46/228 (20%), Positives = 79/228 (34%), Gaps = 30/228 (13%)
Query: 184 NMYHHFCDFFN-LYASQHVNASHPDVFSTDVHIMIWESYTYASAFADTFRAFTRHPVWDL 242
N H DF L+ + + + F + +
Sbjct: 2 NFGHWLLDFLPRLWLLPEEILDDDIIV---LIPDSGSPPPFIREFLELL-GIPED---RI 54
Query: 243 KTFTGLTVCFKNLVLPLLPRMIYGLYYNTPLIWGCEKSGLMEAFSKHILHRLKVRRLRRK 302
V + L++P P G + L+ + R
Sbjct: 55 VLKYDEPVRVERLIVPSPPFPAGGYF-----------GPLLPRLRDLLR-----ERFNLS 98
Query: 303 NSKVRITLLSR-DTQYRNILNEQELIEALSQEPSVKVKRVVYNRQMNFTKQLEKTYNSDI 361
K R +SR R ILNE EL EAL P +V ++ +Q++ ++ +
Sbjct: 99 KIKPRKVYISRKKAGRRRILNEDELEEAL---PKYGF-EIVDPETLSLEEQVKLFSSAKV 154
Query: 362 LIGMHGAGLTHLMFLPDWAVVFELYNCED-EHCYKDLARLRGIKYITW 408
++G HG+ LT+L+F+P V EL + +++LA L G+ Y
Sbjct: 155 IVGPHGSALTNLIFMPPGTGVVELVPPNRLDPSFRNLAALLGLDYYYV 202
|
Family of uncharacterized proteins. Length = 206 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 469 | |||
| KOG4698|consensus | 475 | 100.0 | ||
| PF04577 | 206 | DUF563: Protein of unknown function (DUF563); Inte | 99.97 | |
| COG4421 | 368 | Capsular polysaccharide biosynthesis protein [Carb | 99.78 | |
| cd05212 | 140 | NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding dom | 91.09 | |
| PRK14178 | 279 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 88.82 | |
| PF02882 | 160 | THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cycl | 88.76 |
| >KOG4698|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-37 Score=320.14 Aligned_cols=272 Identities=31% Similarity=0.434 Sum_probs=226.4
Q ss_pred ccceEEeccccCCCCchhhHhh-HHHHHHHHHhhcCCCCCCCCceEEEEEcC-cchhhHHHHHHHhhcCCCceeccCCCC
Q psy12840 170 YKMDVLKHGQIGAVNMYHHFCD-FFNLYASQHVNASHPDVFSTDVHIMIWES-YTYASAFADTFRAFTRHPVWDLKTFTG 247 (469)
Q Consensus 170 ~~~~vf~~g~~g~~N~yH~f~D-~lPly~tl~~~~s~P~~f~~dv~Ivi~d~-~~~~~~f~el~~~fs~~pii~l~~~~~ 247 (469)
.|+.||+.||+ ++|+||+|+| ++|||++.+- - .|++++++++++. .||..+|.|+++.||++|++...+ ++
T Consensus 168 ~pa~vfs~Gg~-tgn~yhdf~d~~ipL~it~~~-~----~~n~ev~~li~~~~~ww~~kf~Dvv~~lSn~~~v~~~~-~~ 240 (475)
T KOG4698|consen 168 VPAIVFSTGGY-TGNEYHDFNDGIIPLFITEAE-L----RFNKEVQFLITETHSWWDMKFGDVVRQLSNYPVVDFDA-EL 240 (475)
T ss_pred cchheeecCCc-chhhHHHHHhhhhhhhcccch-h----cccccEEEEEEEcchhhhhhHHHHHHhcCCCceEEecC-Cc
Confidence 47778999999 9999999999 7999999762 1 2889999999999 567779999999999999888876 78
Q ss_pred ceeeeceEEEcCCccccccccccCccccCCCcchHHHHHHHHHHHh----cCCCccccCCCceEEEEEEeCCCCCcccCH
Q psy12840 248 LTVCFKNLVLPLLPRMIYGLYYNTPLIWGCEKSGLMEAFSKHILHR----LKVRRLRRKNSKVRITLLSRDTQYRNILNE 323 (469)
Q Consensus 248 ~~vCF~~aIv~l~pr~~~gl~y~~pl~~gc~~s~l~~~Fr~~il~~----l~i~~~~p~~~~~rvv~isR~~~~R~I~Ne 323 (469)
+.+||+++++|+..++.....++.|...+|.+...+++|.+..++. .+++... ..++||+++++|.++ |.|+||
T Consensus 241 ~ThcF~~~~vgL~~h~~y~v~~t~~~~~~~~s~~~fr~~l~~a~~~~i~~~~~t~~~-~~kkpri~~lsR~~~-r~Ilne 318 (475)
T KOG4698|consen 241 RTHCFKEAIVGLVSHFPYAVNPTQPPPNGTLSMLDFRNLLDKALSPRIPEANVTAPE-PWKKPRITILSRAGS-RAILNE 318 (475)
T ss_pred eEEEeeeeeeeeeecccccccCCcCCCccccccccHHHHHHHHhcccccccccCCcC-hhhCCceEEEecccc-hhhhcc
Confidence 9999999999998766666667777778888888999999998876 4555443 346799999999998 999999
Q ss_pred HHHHHHHhcCCCcEEEEEEcCCCCCHHHHHHHHccCCEEEEechhHHhhhhcCCCCcEEEEEecCCCchhHHHHHHHCCC
Q psy12840 324 QELIEALSQEPSVKVKRVVYNRQMNFTKQLEKTYNSDILIGMHGAGLTHLMFLPDWAVVFELYNCEDEHCYKDLARLRGI 403 (469)
Q Consensus 324 ~el~~~Lk~~~g~~v~vv~~~e~lsf~eQi~l~~~adVlIG~HGAgLtn~lFmppga~ViEl~P~~~~~~y~~lA~~~Gl 403 (469)
+||.+.+++. ||+|.+++++ ..++.+|+.+.+++||+||+|||||||++|+||++++|+|+|+|+..|+..+|.+.+.
T Consensus 319 ~el~~~~~~~-gf~v~~~~~~-~t~v~~~~~i~~s~~vmiGvHGa~lth~lfl~~~~~~iqi~pcg~~~w~a~~a~~~p~ 396 (475)
T KOG4698|consen 319 DELPRMLEDI-GFEVSVLRPD-RTEVAKQLRITNSSDVMIGVHGAGLTHLLFLPPWAGVIQIYPCGDPGWAAKLARLRPA 396 (475)
T ss_pred hhhhHHHHhC-CCceEEeccc-ccchhhhhheeeccceeeeccCccceeEEecCCcceEEEEEECCCccchhhhhhcccc
Confidence 9999999999 9999999885 6999999999999999999999999999999999999999999988888888888887
Q ss_pred eEEEEec--------CCCCCCCCCCCCCCCCC----------------CCCccceeecHHHHHHHHHHHHHHH
Q psy12840 404 KYITWED--------KSKLEPQDEGHHPNGGA----------------HAKFTNYKFDVAEFVRLVRRGVKHV 452 (469)
Q Consensus 404 ~Y~~~~~--------~~~l~p~d~~~hp~~g~----------------~~k~~n~~vD~~ef~~~L~~Al~~v 452 (469)
+|..|+- ++.+.-++.++++...+ ....|++++|+.+|+..+.+|....
T Consensus 397 k~~~l~y~~ykI~~~es~l~~~y~~d~~~v~dp~s~~~~~f~~~k~~~yl~~q~v~ld~nRf~~~~~~a~~~~ 469 (475)
T KOG4698|consen 397 KYMTLEYAEYKIRAEESELYHKYGGDNTIVFDPISFQKKGFEETKKKVYLELQAVRLDINRFRKTLVKAYLKE 469 (475)
T ss_pred ceeccccceeEEeecccceeeeccCCCceecccceeccccceeeeeeeeEeEeeeehhhhhcccchhHHHHHH
Confidence 7777762 12233333333332211 1126899999999999998887654
|
|
| >PF04577 DUF563: Protein of unknown function (DUF563); InterPro: IPR007657 This is a family of uncharacterised glycosyltransferases belonging to glycosyltransferase family 61 | Back alignment and domain information |
|---|
| >COG4421 Capsular polysaccharide biosynthesis protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
| >cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase | Back alignment and domain information |
|---|
| >PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
| >PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF) | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 469 | |||
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 3e-04 |
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 42.5 bits (99), Expect = 3e-04
Identities = 57/403 (14%), Positives = 113/403 (28%), Gaps = 118/403 (29%)
Query: 93 PGEHKGWVKSKAAQFDTFYRQADFG-Y---VKEQREEMTVLCEPALAEDSSLECSKHLRF 148
G K WV + DF + +K TVL E ++ + R
Sbjct: 159 LGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVL-EMLQKLLYQIDPNWTSRS 217
Query: 149 CRGRNIFMDLTGLNTRKEPI----RYK-----MDVLKHGQIGAVNMYHHFC--------- 190
NI + + + + Y+ + +++ + N ++ C
Sbjct: 218 DHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKA--WNAFNLSCKILLTTRFK 275
Query: 191 ---DFFNLYASQHVNASH-PDVFSTDVHIMIWESYTYASAFADTFRAFTRHPVWDLKTFT 246
DF + + H++ H + D E + DL
Sbjct: 276 QVTDFLSAATTTHISLDHHSMTLTPD------EV-------KSLLLKYLDCRPQDLP--- 319
Query: 247 GLTVCFKNLVLPLLPRMIYGLYYNTPLIW------GCEK-SGLMEAFSKHILHRLKVRRL 299
V P +I + W C+K + ++E+ L+ L+
Sbjct: 320 -REVL---TTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESS----LNVLEPAEY 371
Query: 300 R---------RKNSKVRITLLSR------DTQYRNILNE---QELIEALSQEPSVKVKRV 341
R ++ + LLS + ++N+ L+E +E ++ +
Sbjct: 372 RKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISI--- 428
Query: 342 VYNRQMNFTKQLEKTYNSDILIGMHGAGLTHLMFLPDWAVVFELYNCEDEHCYKDLARLR 401
+ + +LE Y +H + + YN DL
Sbjct: 429 -PSIYLELKVKLENEYA------LH-------------RSIVDHYNIPKTFDSDDLIPPY 468
Query: 402 GIKYITWEDKSKLEPQDEGHHPNGGAHAK--------FTNYKF 436
+Y GHH H + F +++F
Sbjct: 469 LDQYFYSH---------IGHHLKNIEHPERMTLFRMVFLDFRF 502
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 469 | |||
| 3tnl_A | 315 | Shikimate dehydrogenase; structural genomics, cent | 81.12 | |
| 4a5o_A | 286 | Bifunctional protein fold; oxidoreductase, hydrola | 80.41 |
| >3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A* | Back alignment and structure |
|---|
Probab=81.12 E-value=6.8 Score=38.86 Aligned_cols=94 Identities=14% Similarity=0.192 Sum_probs=63.1
Q ss_pred EEEEEEeCCCCCcccCHHHHHHHHhcCCCcEEEEEEcCCCCCHHHHHHHHccCCEEEEechhHHhh---------hhcCC
Q psy12840 307 RITLLSRDTQYRNILNEQELIEALSQEPSVKVKRVVYNRQMNFTKQLEKTYNSDILIGMHGAGLTH---------LMFLP 377 (469)
Q Consensus 307 rvv~isR~~~~R~I~Ne~el~~~Lk~~~g~~v~vv~~~e~lsf~eQi~l~~~adVlIG~HGAgLtn---------~lFmp 377 (469)
+|++++|... .....+++.+.+.+..++++.++++. + ..+--+.+.++||||..-.+|+.. .-+++
T Consensus 180 ~V~i~nR~~~--~~~~a~~la~~~~~~~~~~~~~~~~~-~--~~~l~~~l~~aDiIINaTp~Gm~~~~~~~p~~~~~~l~ 254 (315)
T 3tnl_A 180 EISIFNRKDD--FYANAEKTVEKINSKTDCKAQLFDIE-D--HEQLRKEIAESVIFTNATGVGMKPFEGETLLPSADMLR 254 (315)
T ss_dssp EEEEEECSST--THHHHHHHHHHHHHHSSCEEEEEETT-C--HHHHHHHHHTCSEEEECSSTTSTTSTTCCSCCCGGGCC
T ss_pred EEEEEECCCc--hHHHHHHHHHHhhhhcCCceEEeccc-h--HHHHHhhhcCCCEEEECccCCCCCCCCCCCCCcHHHcC
Confidence 6778888632 23445667777765446777777663 2 233335678999999888888652 12467
Q ss_pred CCcEEEEEecCCCchhHHHHHHHCCCeE
Q psy12840 378 DWAVVFELYNCEDEHCYKDLARLRGIKY 405 (469)
Q Consensus 378 pga~ViEl~P~~~~~~y~~lA~~~Gl~Y 405 (469)
++.+|+++.=.-..+.+-..|+..|.+.
T Consensus 255 ~~~~V~DlvY~P~~T~ll~~A~~~G~~~ 282 (315)
T 3tnl_A 255 PELIVSDVVYKPTKTRLLEIAEEQGCQT 282 (315)
T ss_dssp TTCEEEESCCSSSSCHHHHHHHHTTCEE
T ss_pred CCCEEEEeccCCCCCHHHHHHHHCCCeE
Confidence 8899999863224578888999999854
|
| >4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1} | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 469 | |||
| d1gdha2 | 129 | D-glycerate dehydrogenase {Hyphomicrobium methylov | 82.8 | |
| d1b0aa1 | 166 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 80.91 |
| >d1gdha2 c.23.12.1 (A:2-100,A:292-321) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Formate/glycerate dehydrogenase catalytic domain-like family: Formate/glycerate dehydrogenases, substrate-binding domain domain: D-glycerate dehydrogenase species: Hyphomicrobium methylovorum [TaxId: 84]
Probab=82.80 E-value=2.7 Score=34.01 Aligned_cols=79 Identities=15% Similarity=0.189 Sum_probs=60.3
Q ss_pred HHHHHHHhcCCCcEEEEEEcCCCCCHHHHHHHHccCCEEEEechhHHhhhhc--CCCCcEEEEEecCCCchhHHHHHHHC
Q psy12840 324 QELIEALSQEPSVKVKRVVYNRQMNFTKQLEKTYNSDILIGMHGAGLTHLMF--LPDWAVVFELYNCEDEHCYKDLARLR 401 (469)
Q Consensus 324 ~el~~~Lk~~~g~~v~vv~~~e~lsf~eQi~l~~~adVlIG~HGAgLtn~lF--mppga~ViEl~P~~~~~~y~~lA~~~ 401 (469)
++.++.|++. |++....-.+.+|-+|-++...++|++|...+..++.-++ +|+.-.+|--+..|....=-..|+.+
T Consensus 12 ~~~~~~l~~~--~~v~~~~~~~~~s~~el~~~~~~~d~ii~~~~~~i~~~~l~~~~~~LK~I~~~gvG~d~ID~~~a~~~ 89 (129)
T d1gdha2 12 EAAMARARES--YDVIAHGDDPKITIDEMIETAKSVDALLITLNEKCRKEVIDRIPENIKCISTYSIGFDHIDLDACKAR 89 (129)
T ss_dssp HHHHHHHHTT--SEEEECCSTTCCCHHHHHHHHTTCSEEEEETTSCBCHHHHHHSCTTCCEEEEESSCCTTBCHHHHHHT
T ss_pred HHHHHHHHcC--CcEEEeCCCCCCCHHHHHHHhcCCCEEEEcCCchhhhHHHhhhhhcceeeeecccCCccccHHHHHhC
Confidence 5688888875 5765433224688899999999999998888888999988 66677788777777655546678889
Q ss_pred CCe
Q psy12840 402 GIK 404 (469)
Q Consensus 402 Gl~ 404 (469)
|+.
T Consensus 90 gI~ 92 (129)
T d1gdha2 90 GIK 92 (129)
T ss_dssp TCE
T ss_pred CCE
Confidence 986
|
| >d1b0aa1 c.2.1.7 (A:123-288) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|