Psyllid ID: psy12849

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------14
Protein Sequence
MQNVNVNQKLTADILKIFLFLQKASWFGVRTNRTTVVNTINESSILIMAKKCRVILNCVGPYTWYGEAVVKACIEAKTHHVDITGEPYFMEYMQYEYNTRAQESEVCVVSACGIETLPIDMGVLMLQDSFEGHSGKEN
Secondary Structure (PSIPRED)
ccccccccccHHHHHHHHHHHHHHcccccccccEEEEEcccHHHHHHHHHcccEEEEcccccccccHHHHHHHHHccccEEEccccHHHHHHHHHHHHHHHHHcccEEEEcccccccHHHHHHHHHHHHHHHcccccc
Secondary Structure Prediction (SSPRO)
cccccccHHHHHHHHHHHHHHHHHHccccccccEEEEEcccHHHHHHHHHHcEEEEEcccHHHHccHHHHHHHHHccccEEEccccHHHHHHHHHHHHHHHHHcccEEEEcccccccccHHHHHEEHHHccccccccc
Coil and Loop (DISEMBL)
mqnvnvnqKLTADILKIFLFLQKaswfgvrtnrttVVNTINESSILIMAKKCRVILNCVGPYTWYGEAVVKACIEAKthhvditgepyFMEYMQYEYNTRAQESEVCVVSacgietlpidMGVLMLqdsfeghsgken
Flexible Loop (DISEMBL)
mqnvnvnqKLTADILKIFLFLQKaswfgvrtnrttvvnTINESSILIMAKKCRVILNCVGPYTWYGEAVVKACIEAKTHHVDITGEPYFMEYMQYEYNTRAQESEVCVVSACGIETLPIDMGVLMLQDsfeghsgken
Low Complexity Region (SEG)
MQNVNVNQKLTADILKIFLFLQKASWFGvrtnrttvvntINESSILIMAKKCRVILNCVGPYTWYGEAVVKACIEAKTHHVDITGEPYFMEYMQYEYNTRAQESEVCVVSACGIETLPIDMGVLMLQDSFEGHSGKEN
Disordered region (IsUnstruct)
*******QKLTADILKIFLFLQKASWFGVRTNRTTVVNTINESSILIMAKKCRVILNCVGPYTWYGEAVVKACIEAKTHHVDITGEPYFMEYMQYEYNTRAQESEVCVVSACGIETLPIDMGVLMLQ***********
Disordered Region (DISOPRED)
*QNVNVNQKLTADILKIFLF*QKA*WFGVRTNRTTVVNTINESSILIMAKKCRVILNCVGPYTWYGEAVVKACIEAKTHHVDITGEPYFMEYMQYEYNTRAQESEVCVVSACGIETLPIDMGVLMLQDS*********
Disordered Region (DISEMBL)
MQNVNVNQKLTADILKIFLFLQKASWFGVRTNRTTVVNTINESSILIMAKKCRVILNCVGPYTWYGEAVVKACIEAKTHHVDITGEPYFMEYMQYEYNTRAQESEVCVVSACGIETLPIDMGVLMLQDSF********
Disordered Region (DISPRO)
**NVNVNQKLTADILKIFLFLQKASWFGVRTNRTTVVNTINESSILIMAKKCRVILNCVGPYTWYGEAVVKACIEAKTHHVDITGEPYFMEYMQYEYNTRAQESEVCVVSACGIETLPIDMGVLMLQDSFE*******
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MQNVNVNQKLTADILKIFLFLQKASWFGVRTNRTTVVNTINESSILIMAKKCRVILNCVGPYTWYGEAVVKACIEAKTHHVDITGEPYFMEYMQYEYNTRAQESEVCVVSACGIETLPIDMGVLMLQDSFEGHSGKEN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	138	2.2.26 [Sep-21-2011]
Q3T067	429	Saccharopine dehydrogenas	yes	N/A	0.702	0.226	0.422	2e-20
Q6AY30	429	Saccharopine dehydrogenas	yes	N/A	0.666	0.214	0.467	3e-20
Q8R127	429	Saccharopine dehydrogenas	yes	N/A	0.811	0.261	0.410	3e-20
Q8NBX0	429	Saccharopine dehydrogenas	yes	N/A	0.746	0.240	0.385	3e-20
Q5R5C9	429	Saccharopine dehydrogenas	yes	N/A	0.746	0.240	0.377	2e-19
Q8LGI2	454	Probable mitochondrial sa	yes	N/A	0.630	0.191	0.402	1e-16
Q7D745	419	Putative trans-acting eno	yes	N/A	0.659	0.217	0.364	2e-12
O53176	419	Putative trans-acting eno	yes	N/A	0.659	0.217	0.364	2e-12
P95139	418	Trans-acting enoyl reduct	yes	N/A	0.644	0.212	0.366	4e-10
A5U6W1	418	Trans-acting enoyl reduct	no	N/A	0.644	0.212	0.366	4e-10

>sp|Q3T067|SCPDL_BOVIN Saccharopine dehydrogenase-like oxidoreductase OS=Bos taurus GN=SCCPDH PE=2 SV=1

 Score = 97.4 bits (241), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 41/97 (42%), Positives = 66/97 (68%)

Query: 36  VVNTINESSILIMAKKCRVILNCVGPYTWYGEAVVKACIEAKTHHVDITGEPYFMEYMQY 95
           + +  N +S+  MAK+  V+LNCVGPY +YGE V+KACIE  T  +DI+GEP F+E M +
Sbjct: 76  ICDITNPASLDEMAKQATVVLNCVGPYRFYGEPVIKACIENGTSCIDISGEPQFLELMYW 135

Query: 96  EYNTRAQESEVCVVSACGIETLPIDMGVLMLQDSFEG 132
           +Y+ +A E  V ++ + G +++P D+GV+  ++   G
Sbjct: 136 KYHEKAAEKGVYIIGSSGFDSIPADLGVIYTRNKMNG 172

Bos taurus (taxid: 9913)
EC: 1EC: .EC: -EC: .EC: -EC: .EC: -

>sp|Q6AY30|SCPDL_RAT Saccharopine dehydrogenase-like oxidoreductase OS=Rattus norvegicus GN=Sccpdh PE=2 SV=1

 Score = 97.1 bits (240), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 43/92 (46%), Positives = 62/92 (67%)

Query: 41  NESSILIMAKKCRVILNCVGPYTWYGEAVVKACIEAKTHHVDITGEPYFMEYMQYEYNTR 100
           N +S+  MAKK  ++LNCVGPY +YGE VVKACIE  T  +DI GEP F+E M  +Y+ +
Sbjct: 81  NPASLDEMAKKATLVLNCVGPYRFYGEPVVKACIENGTSCIDICGEPQFLELMHVKYHEK 140

Query: 101 AQESEVCVVSACGIETLPIDMGVLMLQDSFEG 132
           A E  V ++ + G +++P D+GVL  ++   G
Sbjct: 141 AAEKGVYIIGSSGFDSIPADLGVLYTRNQMNG 172

Rattus norvegicus (taxid: 10116)

EC: 1

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

>sp|Q8R127|SCPDL_MOUSE Saccharopine dehydrogenase-like oxidoreductase OS=Mus musculus GN=Sccpdh PE=2 SV=1

 Score = 97.1 bits (240), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 48/117 (41%), Positives = 74/117 (63%), Gaps = 5/117 (4%)

Query: 21  LQKASWFGVRTNRTTVVNTI-----NESSILIMAKKCRVILNCVGPYTWYGEAVVKACIE 75
           L+KA+    R + ++ V  I     N +S+  MAK+ +++LNCVGPY +YGE VVKACIE
Sbjct: 56  LEKAAQKLGRPSLSSEVGVIICDISNPASLDEMAKQAKLVLNCVGPYRFYGEPVVKACIE 115

Query: 76  AKTHHVDITGEPYFMEYMQYEYNTRAQESEVCVVSACGIETLPIDMGVLMLQDSFEG 132
             T  +DI GEP F+E M  +Y+ +A E  V ++ + G +++P D+GVL  ++   G
Sbjct: 116 NGTSCIDICGEPQFLELMHAKYHEKAAEKGVYIIGSSGFDSIPADLGVLYTRNQMNG 172

Mus musculus (taxid: 10090)

EC: 1

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

>sp|Q8NBX0|SCPDL_HUMAN Saccharopine dehydrogenase-like oxidoreductase OS=Homo sapiens GN=SCCPDH PE=1 SV=1

 Score = 97.1 bits (240), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 44/114 (38%), Positives = 69/114 (60%), Gaps = 11/114 (9%)

Query: 36  VVNTINESSILIMAKKCRVILNCVGPYTWYGEAVVKACIEAKTHHVDITGEPYFMEYMQY 95
           + +  N +S+  MAK+  V+LNCVGPY +YGE V+KACIE     +DI+GEP F+E MQ 
Sbjct: 76  ICDIANPASLDEMAKQATVVLNCVGPYRFYGEPVIKACIENGASCIDISGEPQFLELMQL 135

Query: 96  EYNTRAQESEVCVVSACGIETLPIDMGVLMLQDSFEG-----------HSGKEN 138
           +Y+ +A +  V ++ + G +++P D+GV+  ++   G           HSG E 
Sbjct: 136 KYHEKAADKGVYIIGSSGFDSIPADLGVIYTRNKMNGTLTAVESFLTIHSGPEG 189

Homo sapiens (taxid: 9606)

EC: 1

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

>sp|Q5R5C9|SCPDL_PONAB Saccharopine dehydrogenase-like oxidoreductase OS=Pongo abelii GN=SCCPDH PE=2 SV=1

 Score = 94.7 bits (234), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 43/114 (37%), Positives = 68/114 (59%), Gaps = 11/114 (9%)

Query: 36  VVNTINESSILIMAKKCRVILNCVGPYTWYGEAVVKACIEAKTHHVDITGEPYFMEYMQY 95
           + +  N +S+  MAK+  V+ NCVGPY +YGE V+KACIE     +DI+GEP F+E MQ 
Sbjct: 76  ICDIANPASLDEMAKQATVVPNCVGPYRFYGEPVIKACIENGASCIDISGEPQFLELMQL 135

Query: 96  EYNTRAQESEVCVVSACGIETLPIDMGVLMLQDSFEG-----------HSGKEN 138
           +Y+ +A +  V ++ + G +++P D+GV+  ++   G           HSG E 
Sbjct: 136 KYHEKAADKGVYIIGSSGFDSIPADLGVIYTRNKMNGTLTAVESFLTIHSGPEG 189

Pongo abelii (taxid: 9601)

EC: 1

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

>sp|Q8LGI2|SCPDL_ARATH Probable mitochondrial saccharopine dehydrogenase-like oxidoreductase At5g39410 OS=Arabidopsis thaliana GN=At5g39410 PE=1 SV=2

 Score = 85.1 bits (209), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 35/87 (40%), Positives = 61/87 (70%)

Query: 38  NTINESSILIMAKKCRVILNCVGPYTWYGEAVVKACIEAKTHHVDITGEPYFMEYMQYEY 97
           +T +  S+  +  + ++ILNCVGP+  +G+ VV AC ++   ++DI+GEP FME M+  Y
Sbjct: 78  DTSDPDSLRRLCTQTKLILNCVGPFRIHGDPVVSACADSGCDYLDISGEPEFMERMEANY 137

Query: 98  NTRAQESEVCVVSACGIETLPIDMGVL 124
           + RA+E+   +VSACG +++P ++G+L
Sbjct: 138 HDRAEETGSLIVSACGFDSIPAELGLL 164

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

>sp|Q7D745|Y2525_MYCTU Putative trans-acting enoyl reductase MT2525 OS=Mycobacterium tuberculosis GN=MT2525 PE=3 SV=2

 Score = 70.9 bits (172), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 35/96 (36%), Positives = 56/96 (58%), Gaps = 5/96 (5%)

Query: 43  SSILIMAKKCRVILNCVGPYTWYGEAVVKACIEAKTHHVDITGEPYFMEYMQYEYNTRAQ 102
           S++  MA + +V++  VGPYT YG  +V AC  A T + D+TGEP FM      Y+ +A 
Sbjct: 71  STLQAMAARAQVVVTTVGPYTRYGLPLVAACAAAGTDYADLTGEPMFMRNSIDLYHKQAA 130

Query: 103 ESEVCVVSACGIETLPIDMGVLMLQDSFEGHSGKEN 138
           ++   +V ACG +++P D+ V  L      H+ +E+
Sbjct: 131 DTGARIVHACGFDSVPSDLSVYALY-----HAARED 161

Mycobacterium tuberculosis (taxid: 1773)

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: -

>sp|O53176|Y2449_MYCTU Putative trans-acting enoyl reductase Rv2449c OS=Mycobacterium tuberculosis GN=Rv2449c PE=1 SV=3

 Score = 70.9 bits (172), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 35/96 (36%), Positives = 56/96 (58%), Gaps = 5/96 (5%)

Query: 43  SSILIMAKKCRVILNCVGPYTWYGEAVVKACIEAKTHHVDITGEPYFMEYMQYEYNTRAQ 102
           S++  MA + +V++  VGPYT YG  +V AC  A T + D+TGEP FM      Y+ +A 
Sbjct: 71  STLQAMAARAQVVVTTVGPYTRYGLPLVAACAAAGTDYADLTGEPMFMRNSIDLYHKQAA 130

Query: 103 ESEVCVVSACGIETLPIDMGVLMLQDSFEGHSGKEN 138
           ++   +V ACG +++P D+ V  L      H+ +E+
Sbjct: 131 DTGARIVHACGFDSVPSDLSVYALY-----HAARED 161

Mycobacterium tuberculosis (taxid: 1773)

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: -

>sp|P95139|TAER_MYCTU Trans-acting enoyl reductase OS=Mycobacterium tuberculosis GN=Rv2953 PE=1 SV=1

 Score = 63.5 bits (153), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 33/90 (36%), Positives = 53/90 (58%), Gaps = 1/90 (1%)

Query: 48  MAKKCRVILNCVGPYTWYGEAVVKACIEAKTHHVDITGEPYFMEYMQYEYNTRAQESEVC 107
           MA + +V+L  VGPYT YG  +V AC +A T + D+TGE  F       Y+ +A ++   
Sbjct: 76  MAARAQVVLTTVGPYTRYGLPLVAACAKAGTDYADLTGELMFCRNSIDLYHKQAADTGAR 135

Query: 108 VVSACGIETLPIDMGVLML-QDSFEGHSGK 136
           ++ ACG +++P D+ V  L + S E  +G+
Sbjct: 136 IILACGFDSIPSDLNVYQLYRRSVEDGTGE 165

Involved in the reduction of the double bond between C-4 and C-5 during phthiocerol dimycocerosates (DIM A) and glycosylated phenolphthiocerol dimycocerosates (PGL) biosynthesis.

Mycobacterium tuberculosis (taxid: 1773)

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: -

>sp|A5U6W1|TAER_MYCTA Trans-acting enoyl reductase OS=Mycobacterium tuberculosis (strain ATCC 25177 / H37Ra) GN=MRA_2980 PE=3 SV=1

 Score = 63.5 bits (153), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 33/90 (36%), Positives = 53/90 (58%), Gaps = 1/90 (1%)

Query: 48  MAKKCRVILNCVGPYTWYGEAVVKACIEAKTHHVDITGEPYFMEYMQYEYNTRAQESEVC 107
           MA + +V+L  VGPYT YG  +V AC +A T + D+TGE  F       Y+ +A ++   
Sbjct: 76  MAARAQVVLTTVGPYTRYGLPLVAACAKAGTDYADLTGELMFCRNSIDLYHKQAADTGAR 135

Query: 108 VVSACGIETLPIDMGVLML-QDSFEGHSGK 136
           ++ ACG +++P D+ V  L + S E  +G+
Sbjct: 136 IILACGFDSIPSDLNVYQLYRRSVEDGTGE 165

Involved in the reduction of the double bond between C-4 and C-5 during phthiocerol dimycocerosates (DIM A) and glycosylated phenolphthiocerol dimycocerosates (PGL) biosynthesis.

Mycobacterium tuberculosis (strain ATCC 25177 / H37Ra) (taxid: 419947)

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	138
195451958	430	GK13975 [Drosophila willistoni] gi|19416	0.702	0.225	0.556	1e-28
195453709	434	GK14366 [Drosophila willistoni] gi|19416	0.702	0.223	0.546	2e-28
198450546	612	GA18705 [Drosophila pseudoobscura pseudo	0.702	0.158	0.536	6e-28
195055899	431	GH13859 [Drosophila grimshawi] gi|193892	0.702	0.225	0.536	1e-27
289739645	427	putative saccharopine dehydrogenase [Glo	0.702	0.227	0.536	1e-27
242018071	427	conserved hypothetical protein [Pediculu	0.724	0.234	0.554	2e-27
194742644	433	GF17952 [Drosophila ananassae] gi|190626	0.702	0.224	0.536	3e-27
158290701	430	AGAP002652-PA [Anopheles gambiae str. PE	0.666	0.213	0.565	7e-27
195144434	430	GL24001 [Drosophila persimilis] gi|19410	0.702	0.225	0.525	1e-26
125775564	430	GA15398 [Drosophila pseudoobscura pseudo	0.666	0.213	0.554	1e-26

>gi|195451958|ref|XP_002073150.1| GK13975 [Drosophila willistoni] gi|194169235|gb|EDW84136.1| GK13975 [Drosophila willistoni]

 Score =  130 bits (328), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 54/97 (55%), Positives = 76/97 (78%)

Query: 36  VVNTINESSILIMAKKCRVILNCVGPYTWYGEAVVKACIEAKTHHVDITGEPYFMEYMQY 95
           + +  NESS+L MAK+CR+++N  GPY +YGE VVKACIEA THHVD++GEP +ME MQ 
Sbjct: 66  IADVNNESSLLEMAKRCRIVVNTAGPYRFYGEKVVKACIEAGTHHVDVSGEPQYMETMQL 125

Query: 96  EYNTRAQESEVCVVSACGIETLPIDMGVLMLQDSFEG 132
           +YN +A+E  V V+SACG +++P DMGV  ++ +F+G
Sbjct: 126 KYNYKAKEKGVYVISACGFDSIPADMGVQFIEKNFDG 162

Source: Drosophila willistoni

Species: Drosophila willistoni

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195453709|ref|XP_002073906.1| GK14366 [Drosophila willistoni] gi|194169991|gb|EDW84892.1| GK14366 [Drosophila willistoni]

 Score =  130 bits (326), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 53/97 (54%), Positives = 76/97 (78%)

Query: 36  VVNTINESSILIMAKKCRVILNCVGPYTWYGEAVVKACIEAKTHHVDITGEPYFMEYMQY 95
           V +  +E+S+L MAK+CR+++N  GPY +YGE VV ACIEA THHVD++GEP +ME MQ 
Sbjct: 69  VADVFDEASLLEMAKRCRIVVNTAGPYRFYGEKVVSACIEAGTHHVDVSGEPQYMETMQL 128

Query: 96  EYNTRAQESEVCVVSACGIETLPIDMGVLMLQDSFEG 132
           +YN RA+E  V +VSACG +++P DMGV+ ++ +F+G
Sbjct: 129 KYNERAKERGVYIVSACGFDSIPADMGVIFVEKNFDG 165

Source: Drosophila willistoni

Species: Drosophila willistoni

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|198450546|ref|XP_001358029.2| GA18705 [Drosophila pseudoobscura pseudoobscura] gi|198131084|gb|EAL27166.2| GA18705 [Drosophila pseudoobscura pseudoobscura]

 Score =  128 bits (322), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 52/97 (53%), Positives = 77/97 (79%)

Query: 36  VVNTINESSILIMAKKCRVILNCVGPYTWYGEAVVKACIEAKTHHVDITGEPYFMEYMQY 95
           + +  NE+S++ MAK+CR+++N  GPY ++GE VVKACIEA THHVD++GEP +ME MQ 
Sbjct: 248 IADVNNEASLIEMAKRCRIVVNTAGPYRFFGENVVKACIEAGTHHVDVSGEPQYMETMQL 307

Query: 96  EYNTRAQESEVCVVSACGIETLPIDMGVLMLQDSFEG 132
           +YN RA+E  V V+SACG +++P DMGV+ ++ +F+G
Sbjct: 308 KYNDRARERGVYVISACGFDSIPADMGVVFIEKNFDG 344

Source: Drosophila pseudoobscura pseudoobscura

Species: Drosophila pseudoobscura

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195055899|ref|XP_001994850.1| GH13859 [Drosophila grimshawi] gi|193892613|gb|EDV91479.1| GH13859 [Drosophila grimshawi]

 Score =  127 bits (320), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 52/97 (53%), Positives = 76/97 (78%)

Query: 36  VVNTINESSILIMAKKCRVILNCVGPYTWYGEAVVKACIEAKTHHVDITGEPYFMEYMQY 95
           + +  +E+S+L MAK CR+++N  GPY +YGE VV+ACIEA THHVD++GEP FME MQ 
Sbjct: 67  IADVNDEASLLDMAKSCRIVVNTAGPYRFYGEKVVRACIEAGTHHVDVSGEPQFMESMQL 126

Query: 96  EYNTRAQESEVCVVSACGIETLPIDMGVLMLQDSFEG 132
           +YN RA+E  V VVSACG +++P +MG++ ++ +F+G
Sbjct: 127 KYNERAKERGVYVVSACGFDSIPTEMGIVFVEKNFDG 163

Source: Drosophila grimshawi

Species: Drosophila grimshawi

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|289739645|gb|ADD18570.1| putative saccharopine dehydrogenase [Glossina morsitans morsitans]

 Score =  127 bits (320), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 52/97 (53%), Positives = 77/97 (79%)

Query: 36  VVNTINESSILIMAKKCRVILNCVGPYTWYGEAVVKACIEAKTHHVDITGEPYFMEYMQY 95
           V +  +ESS+L MA++C V++NCVGPY +YGE VV+ACIE+ THHVD++GEP +ME MQ 
Sbjct: 65  VADVDDESSLLQMARRCHVLVNCVGPYRFYGEPVVRACIESGTHHVDVSGEPQYMETMQL 124

Query: 96  EYNTRAQESEVCVVSACGIETLPIDMGVLMLQDSFEG 132
           +Y+  AQE  V +VSACG +++P DMG++ ++ +F+G
Sbjct: 125 KYDREAQEKNVYIVSACGFDSIPADMGMIFIEKNFDG 161

Source: Glossina morsitans morsitans

Species: Glossina morsitans

Genus: Glossina

Family: Glossinidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242018071|ref|XP_002429505.1| conserved hypothetical protein [Pediculus humanus corporis] gi|212514447|gb|EEB16767.1| conserved hypothetical protein [Pediculus humanus corporis]

 Score =  127 bits (318), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 56/101 (55%), Positives = 79/101 (78%), Gaps = 1/101 (0%)

Query: 34  TTVVNTINES-SILIMAKKCRVILNCVGPYTWYGEAVVKACIEAKTHHVDITGEPYFMEY 92
           T ++  +N+S S+  MAK+ ++I+NC GPY +YGEAV+KACIE KTHHVD++GEP FME 
Sbjct: 65  TQIIADLNDSDSLNAMAKQAKIIVNCCGPYRFYGEAVIKACIENKTHHVDVSGEPQFMEK 124

Query: 93  MQYEYNTRAQESEVCVVSACGIETLPIDMGVLMLQDSFEGH 133
           MQ +Y+  A+E+EV VVSACG +++P DMGV+ L++ F G 
Sbjct: 125 MQLKYHEDAKENEVYVVSACGFDSIPADMGVVFLKNEFGGQ 165

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194742644|ref|XP_001953811.1| GF17952 [Drosophila ananassae] gi|190626848|gb|EDV42372.1| GF17952 [Drosophila ananassae]

 Score =  126 bits (317), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 52/97 (53%), Positives = 74/97 (76%)

Query: 36  VVNTINESSILIMAKKCRVILNCVGPYTWYGEAVVKACIEAKTHHVDITGEPYFMEYMQY 95
           + +  NESS+L MAK+CRV++N  GPY ++GE VVKAC+EA THHVD++GEP +ME MQ 
Sbjct: 66  IADVNNESSLLEMAKRCRVVVNTAGPYRFFGENVVKACLEAGTHHVDVSGEPQYMEQMQL 125

Query: 96  EYNTRAQESEVCVVSACGIETLPIDMGVLMLQDSFEG 132
            YN  A+E  V ++SACG +++P DMGV  ++ +F+G
Sbjct: 126 RYNDLAKERGVYIISACGFDSIPADMGVTFIEKNFDG 162

Source: Drosophila ananassae

Species: Drosophila ananassae

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|158290701|ref|XP_312273.4| AGAP002652-PA [Anopheles gambiae str. PEST] gi|347968293|ref|XP_003436201.1| AGAP002652-PB [Anopheles gambiae str. PEST] gi|157018022|gb|EAA08164.4| AGAP002652-PA [Anopheles gambiae str. PEST] gi|333468072|gb|EGK96812.1| AGAP002652-PB [Anopheles gambiae str. PEST]

 Score =  125 bits (313), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 52/92 (56%), Positives = 72/92 (78%)

Query: 41  NESSILIMAKKCRVILNCVGPYTWYGEAVVKACIEAKTHHVDITGEPYFMEYMQYEYNTR 100
           ++ S+  MA++C+V++NC GPY +YGE VVKACIEA THHVD++GEP +ME MQ EY+ R
Sbjct: 73  DDDSLKQMAERCKVLINCCGPYRFYGEPVVKACIEAGTHHVDVSGEPQYMERMQLEYHQR 132

Query: 101 AQESEVCVVSACGIETLPIDMGVLMLQDSFEG 132
           AQE  V VVSACG +++P D+G + L+  F+G
Sbjct: 133 AQERGVYVVSACGFDSIPADLGTVFLERQFDG 164

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195144434|ref|XP_002013201.1| GL24001 [Drosophila persimilis] gi|194102144|gb|EDW24187.1| GL24001 [Drosophila persimilis]

 Score =  124 bits (312), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 51/97 (52%), Positives = 76/97 (78%)

Query: 36  VVNTINESSILIMAKKCRVILNCVGPYTWYGEAVVKACIEAKTHHVDITGEPYFMEYMQY 95
           + +  +E+S+L MAK+CR+++N  GPY ++GE VV ACIEA THHVD++GEP +ME MQ 
Sbjct: 66  IADINDETSLLEMAKRCRIVVNTAGPYRFHGEKVVNACIEAGTHHVDVSGEPQYMETMQL 125

Query: 96  EYNTRAQESEVCVVSACGIETLPIDMGVLMLQDSFEG 132
           +Y+ RA+E  V VVSACG +++P DMGV+ ++ +F+G
Sbjct: 126 KYDKRAKERGVYVVSACGFDSIPADMGVVFVEKNFDG 162

Source: Drosophila persimilis

Species: Drosophila persimilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|125775564|ref|XP_001358985.1| GA15398 [Drosophila pseudoobscura pseudoobscura] gi|54638726|gb|EAL28128.1| GA15398 [Drosophila pseudoobscura pseudoobscura]

 Score =  124 bits (312), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 51/92 (55%), Positives = 74/92 (80%)

Query: 41  NESSILIMAKKCRVILNCVGPYTWYGEAVVKACIEAKTHHVDITGEPYFMEYMQYEYNTR 100
           +E+S+L MAK+CR+++N  GPY ++GE VV ACIEA THHVD++GEP +ME MQ +Y+ R
Sbjct: 71  DETSLLEMAKRCRIVVNTAGPYRFHGEKVVNACIEAGTHHVDVSGEPQYMETMQLKYDKR 130

Query: 101 AQESEVCVVSACGIETLPIDMGVLMLQDSFEG 132
           A+E  V VVSACG +++P DMGV+ ++ +F+G
Sbjct: 131 AKERGVYVVSACGFDSIPADMGVVFVEKNFDG 162

Source: Drosophila pseudoobscura pseudoobscura

Species: Drosophila pseudoobscura

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	138
FB|FBgn0038038	431	CG5167 [Drosophila melanogaste	0.666	0.213	0.543	1.2e-25
FB|FBgn0037298	430	CG2604 [Drosophila melanogaste	0.666	0.213	0.532	6e-25
UNIPROTKB|Q5ZMK3	434	SCCPDH "Uncharacterized protei	0.652	0.207	0.5	2.4e-21
ZFIN|ZDB-GENE-041010-211	429	sccpdhb "saccharopine dehydrog	0.644	0.207	0.483	2.9e-21
ZFIN|ZDB-GENE-080212-12	466	zgc:174379 "zgc:174379" [Danio	0.666	0.197	0.434	6.9e-20
ZFIN|ZDB-GENE-040718-51	466	sccpdha "saccharopine dehydrog	0.666	0.197	0.434	1.1e-19
WB|WBGene00017719	426	F22F7.1 [Caenorhabditis elegan	0.666	0.215	0.5	1.4e-19
UNIPROTKB|F1MX05	429	SCCPDH "Saccharopine dehydroge	0.666	0.214	0.445	5.1e-19
UNIPROTKB|Q3T067	429	SCCPDH "Saccharopine dehydroge	0.666	0.214	0.445	5.1e-19
RGD|1311440	429	Sccpdh "saccharopine dehydroge	0.666	0.214	0.467	5.1e-19

FB|FBgn0038038 CG5167 [Drosophila melanogaster (taxid:7227)]

 Score = 291 (107.5 bits), Expect = 1.2e-25, P = 1.2e-25
 Identities = 50/92 (54%), Positives = 72/92 (78%)

Query:    41 NESSILIMAKKCRVILNCVGPYTWYGEAVVKACIEAKTHHVDITGEPYFMEYMQYEYNTR 100
             NE+S+L MAK+CR+++N  GPY ++GE VV+ACIEA THHVD++GEP +ME MQ  Y+  
Sbjct:    71 NEASLLEMAKRCRILVNTAGPYRFFGERVVRACIEAGTHHVDVSGEPQYMETMQLRYHDL 130

Query:   101 AQESEVCVVSACGIETLPIDMGVLMLQDSFEG 132
             A+E  V V+SACG +++P DMGV  ++ +F+G
Sbjct:   131 AKERGVYVISACGFDSIPADMGVTFVEKNFDG 162

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005811 "lipid particle" evidence=IDA

FB|FBgn0037298 CG2604 [Drosophila melanogaster (taxid:7227)]

 Score = 285 (105.4 bits), Expect = 6.0e-25, P = 6.0e-25
 Identities = 49/92 (53%), Positives = 72/92 (78%)

Query:    41 NESSILIMAKKCRVILNCVGPYTWYGEAVVKACIEAKTHHVDITGEPYFMEYMQYEYNTR 100
             +++S+L MAKKCR+++N  GPY ++GE VVK CIE+ THHVD++GEP +ME MQ  Y+  
Sbjct:    71 DQASLLEMAKKCRIVVNTAGPYRFHGENVVKCCIESGTHHVDVSGEPQYMETMQLRYDQL 130

Query:   101 AQESEVCVVSACGIETLPIDMGVLMLQDSFEG 132
             A+E  V VVSACG +++P DMGV+ ++ +F+G
Sbjct:   131 AREKGVYVVSACGFDSIPADMGVVFVEKNFDG 162

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005811 "lipid particle" evidence=IDA

GO:0035220 "wing disc development" evidence=IGI

GO:0022416 "chaeta development" evidence=IGI

UNIPROTKB|Q5ZMK3 SCCPDH "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 254 (94.5 bits), Expect = 2.4e-21, P = 2.4e-21
 Identities = 45/90 (50%), Positives = 65/90 (72%)

Query:    43 SSILIMAKKCRVILNCVGPYTWYGEAVVKACIEAKTHHVDITGEPYFMEYMQYEYNTRAQ 102
             +S+  MAK+ RV+LNCVGPY ++GE VVKAC+E     +DI+GEP F+E M  +YN +A 
Sbjct:    88 ASLAAMAKQTRVVLNCVGPYRFFGEPVVKACVENGASCIDISGEPQFLEGMYLKYNEKAA 147

Query:   103 ESEVCVVSACGIETLPIDMGVLMLQDSFEG 132
             E +V V+ +CG +++P DMGVL  +D  +G
Sbjct:   148 EKKVYVIGSCGFDSIPADMGVLYTRDKLKG 177

GO:0000166 "nucleotide binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0005811 "lipid particle" evidence=IEA

GO:0030496 "midbody" evidence=IEA

ZFIN|ZDB-GENE-041010-211 sccpdhb "saccharopine dehydrogenase b" [Danio rerio (taxid:7955)]

 Score = 253 (94.1 bits), Expect = 2.9e-21, P = 2.9e-21
 Identities = 43/89 (48%), Positives = 66/89 (74%)

Query:    44 SILIMAKKCRVILNCVGPYTWYGEAVVKACIEAKTHHVDITGEPYFMEYMQYEYNTRAQE 103
             S+ IM K+  ++LNCVGPY +YGE VVKACIE   H +DI GEP F+E +Q  Y+++A+E
Sbjct:    86 SLAIMCKQAVIVLNCVGPYRFYGEPVVKACIENGAHCIDICGEPQFLEGIQLMYHSKAEE 145

Query:   104 SEVCVVSACGIETLPIDMGVLMLQDSFEG 132
             + V V+ +CG +++P DMG++  ++ F+G
Sbjct:   146 NGVYVIGSCGFDSIPADMGIIYTRNHFQG 174

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

ZFIN|ZDB-GENE-080212-12 zgc:174379 "zgc:174379" [Danio rerio (taxid:7955)]

 Score = 242 (90.2 bits), Expect = 6.9e-20, P = 6.9e-20
 Identities = 40/92 (43%), Positives = 66/92 (71%)

Query:    41 NESSILIMAKKCRVILNCVGPYTWYGEAVVKACIEAKTHHVDITGEPYFMEYMQYEYNTR 100
             ++ S+  M K+  ++L+CVGPY ++GE+VVK+C+E   H +DI+GEP F+E MQ  Y+ +
Sbjct:    84 DQESLAAMCKQAVIVLSCVGPYRFFGESVVKSCVENGAHCLDISGEPQFLEGMQLNYHDQ 143

Query:   101 AQESEVCVVSACGIETLPIDMGVLMLQDSFEG 132
             A +  V +V +CG +++P DMGV+  +D F+G
Sbjct:   144 AADKGVYIVGSCGFDSIPADMGVIYTRDQFKG 175

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

ZFIN|ZDB-GENE-040718-51 sccpdha "saccharopine dehydrogenase a" [Danio rerio (taxid:7955)]

 Score = 240 (89.5 bits), Expect = 1.1e-19, P = 1.1e-19
 Identities = 40/92 (43%), Positives = 65/92 (70%)

Query:    41 NESSILIMAKKCRVILNCVGPYTWYGEAVVKACIEAKTHHVDITGEPYFMEYMQYEYNTR 100
             ++ S+  M K+  ++L+CVGPY ++GE VVK+C+E   H +DI+GEP F+E MQ  Y+ +
Sbjct:    84 DQESLAAMCKQAVIVLSCVGPYRFFGEPVVKSCVENGAHCLDISGEPQFLEGMQLNYHDQ 143

Query:   101 AQESEVCVVSACGIETLPIDMGVLMLQDSFEG 132
             A +  V +V +CG +++P DMGV+  +D F+G
Sbjct:   144 AADKGVYIVGSCGFDSIPADMGVIYTRDQFKG 175

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

WB|WBGene00017719 F22F7.1 [Caenorhabditis elegans (taxid:6239)]

 Score = 238 (88.8 bits), Expect = 1.4e-19, P = 1.4e-19
 Identities = 46/92 (50%), Positives = 66/92 (71%)

Query:    41 NESSILIMAKKCRVILNCVGPYTWYGEAVVKACIEAKTHHVDITGEPYFMEYMQYEYNTR 100
             +E S+  MA++  V++N VGPY  YGEAVVKA +E    HVDI+GEP ++E MQ +Y+ +
Sbjct:    71 DERSLNEMARQANVVINAVGPYRLYGEAVVKAAVENGASHVDISGEPAWIEKMQQKYSKQ 130

Query:   101 AQESEVCVVSACGIETLPIDMGVLMLQDSFEG 132
             A+E  V VVSACG +++P D+GV  L+ +F G
Sbjct:   131 AKEQGVYVVSACGWDSIPADLGVNFLKKNFHG 162

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|F1MX05 SCCPDH "Saccharopine dehydrogenase-like oxidoreductase" [Bos taurus (taxid:9913)]

 Score = 233 (87.1 bits), Expect = 5.1e-19, P = 5.1e-19
 Identities = 41/92 (44%), Positives = 64/92 (69%)

Query:    41 NESSILIMAKKCRVILNCVGPYTWYGEAVVKACIEAKTHHVDITGEPYFMEYMQYEYNTR 100
             N +S+  MAK+  V+LNCVGPY +YGE V+KACIE  T  +DI+GEP F+E M ++Y+ +
Sbjct:    81 NPASLDEMAKQATVVLNCVGPYRFYGEPVIKACIENGTSCIDISGEPQFLELMYWKYHEK 140

Query:   101 AQESEVCVVSACGIETLPIDMGVLMLQDSFEG 132
             A E  V ++ + G +++P D+GV+  ++   G
Sbjct:   141 AAEKGVYIIGSSGFDSIPADLGVIYTRNKMNG 172

GO:0030496 "midbody" evidence=IEA

GO:0005811 "lipid particle" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|Q3T067 SCCPDH "Saccharopine dehydrogenase-like oxidoreductase" [Bos taurus (taxid:9913)]

 Score = 233 (87.1 bits), Expect = 5.1e-19, P = 5.1e-19
 Identities = 41/92 (44%), Positives = 64/92 (69%)

Query:    41 NESSILIMAKKCRVILNCVGPYTWYGEAVVKACIEAKTHHVDITGEPYFMEYMQYEYNTR 100
             N +S+  MAK+  V+LNCVGPY +YGE V+KACIE  T  +DI+GEP F+E M ++Y+ +
Sbjct:    81 NPASLDEMAKQATVVLNCVGPYRFYGEPVIKACIENGTSCIDISGEPQFLELMYWKYHEK 140

Query:   101 AQESEVCVVSACGIETLPIDMGVLMLQDSFEG 132
             A E  V ++ + G +++P D+GV+  ++   G
Sbjct:   141 AAEKGVYIIGSSGFDSIPADLGVIYTRNKMNG 172

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

RGD|1311440 Sccpdh "saccharopine dehydrogenase (putative)" [Rattus norvegicus (taxid:10116)]

 Score = 233 (87.1 bits), Expect = 5.1e-19, P = 5.1e-19
 Identities = 43/92 (46%), Positives = 62/92 (67%)

Query:    41 NESSILIMAKKCRVILNCVGPYTWYGEAVVKACIEAKTHHVDITGEPYFMEYMQYEYNTR 100
             N +S+  MAKK  ++LNCVGPY +YGE VVKACIE  T  +DI GEP F+E M  +Y+ +
Sbjct:    81 NPASLDEMAKKATLVLNCVGPYRFYGEPVVKACIENGTSCIDICGEPQFLELMHVKYHEK 140

Query:   101 AQESEVCVVSACGIETLPIDMGVLMLQDSFEG 132
             A E  V ++ + G +++P D+GVL  ++   G
Sbjct:   141 AAEKGVYIIGSSGFDSIPADLGVLYTRNQMNG 172

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISO

GO:0005811 "lipid particle" evidence=ISO

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0030496 "midbody" evidence=ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	138
COG3268	382	COG3268, COG3268, Uncharacterized conserved protei	1e-25
pfam03435	380	pfam03435, Saccharop_dh, Saccharopine dehydrogenas	8e-10
COG1748	389	COG1748, LYS9, Saccharopine dehydrogenase and rela	3e-05

>gnl|CDD|225807 COG3268, COG3268, Uncharacterized conserved protein [Function unknown]

 Score = 99.1 bits (247), Expect = 1e-25
 Identities = 35/92 (38%), Positives = 53/92 (57%)

Query: 39  TINESSILIMAKKCRVILNCVGPYTWYGEAVVKACIEAKTHHVDITGEPYFMEYMQYEYN 98
               +++  MA + +V+LNCVGPYT YGE +V AC  A T + DITGE  F E     Y+
Sbjct: 59  LGVPAALEAMASRTQVVLNCVGPYTRYGEPLVAACAAAGTDYADITGEIMFFENSIDLYH 118

Query: 99  TRAQESEVCVVSACGIETLPIDMGVLMLQDSF 130
            +A ++   ++  CG +++P D+GV  L    
Sbjct: 119 AQAADAGARIIPGCGFDSIPSDLGVYALLKQA 150

Length = 382

>gnl|CDD|217556 pfam03435, Saccharop_dh, Saccharopine dehydrogenase

 Score = 55.0 bits (133), Expect = 8e-10
 Identities = 24/126 (19%), Positives = 50/126 (39%), Gaps = 17/126 (13%)

Query: 21  LQKASWFGVRTNRTTVVNTI-NESSILIMAKKCRVILNCVGPYTWYGEAVVKACIEAKTH 79
            Q  +   +      +     N  +++ + K+  +++N   P+      V+KACIE   H
Sbjct: 35  AQALAAPKLGLRFIAIAVDADNYEALVALLKEGDLVINLAPPF--LSLTVLKACIETGVH 92

Query: 80  HVDITGEPYFMEYMQYEYNTRAQESEVCVVSACGIETLPIDMGV----------LMLQDS 129
           +VD +    ++   Q   + +A+++ V  V  CG +   + +            L    S
Sbjct: 93  YVDTS----YLREAQLALHEKAKDAGVTAVLGCGFDPGLVSLFAKYALDDLADELAKVLS 148

Query: 130 FEGHSG 135
            + H G
Sbjct: 149 VKIHCG 154

This family comprised of three structural domains that can not be separated in the linear sequence. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase. The saccharopine dehydrogenase can also function as a saccharopine reductase. Length = 380

>gnl|CDD|224662 COG1748, LYS9, Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]

 Score = 41.9 bits (99), Expect = 3e-05
 Identities = 13/61 (21%), Positives = 30/61 (49%), Gaps = 6/61 (9%)

Query: 54  VILNCVGPYTWYGEAVVKACIEAKTHHVDITGEPYFMEYMQYEYNTRAQESEVCVVSACG 113
           +++N   P+      ++KACI+    +VD +    + E   ++ +  A+++ +  V  CG
Sbjct: 71  LVINAAPPF--VDLTILKACIKTGVDYVDTS----YYEEPPWKLDEEAKKAGITAVLGCG 124

Query: 114 I 114
            
Sbjct: 125 F 125

Length = 389

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	138
KOG2733|consensus	423		99.97
COG3268	382	Uncharacterized conserved protein [Function unknow	99.95
PF03435	386	Saccharop_dh: Saccharopine dehydrogenase ; InterPr	99.87
COG1748	389	LYS9 Saccharopine dehydrogenase and related protei	99.82
PLN02819	1042	lysine-ketoglutarate reductase/saccharopine dehydr	99.48
KOG0172|consensus	445		98.61
PRK00048	257	dihydrodipicolinate reductase; Provisional	97.49
TIGR01921	324	DAP-DH diaminopimelate dehydrogenase. This model r	97.07
PF05368	233	NmrA: NmrA-like family; InterPro: IPR008030 NmrA i	97.01
PF01073	280	3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/iso	96.81
PRK13304	265	L-aspartate dehydrogenase; Reviewed	96.48
CHL00194	317	ycf39 Ycf39; Provisional	96.39
TIGR00036	266	dapB dihydrodipicolinate reductase.	96.26
cd01065	155	NAD_bind_Shikimate_DH NAD(P) binding domain of Shi	96.14
PF13460	183	NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X	95.99
PRK12548	289	shikimate 5-dehydrogenase; Provisional	95.82
PF03447	117	NAD_binding_3: Homoserine dehydrogenase, NAD bindi	95.79
TIGR00715	256	precor6x_red precorrin-6x reductase. This enzyme w	95.67
PLN02214	342	cinnamoyl-CoA reductase	95.66
KOG1502|consensus	327		95.48
PLN02657	390	3,8-divinyl protochlorophyllide a 8-vinyl reductas	95.21
PRK13303	265	L-aspartate dehydrogenase; Provisional	95.12
PRK13302	271	putative L-aspartate dehydrogenase; Provisional	95.06
TIGR03855	229	NAD_NadX aspartate dehydrogenase. Members of this	94.99
TIGR01181	317	dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This	94.92
TIGR02853	287	spore_dpaA dipicolinic acid synthetase, A subunit.	94.45
PLN02427	386	UDP-apiose/xylose synthase	94.33
COG1091	281	RfbD dTDP-4-dehydrorhamnose reductase [Cell envelo	94.22
PRK00258	278	aroE shikimate 5-dehydrogenase; Reviewed	94.12
TIGR03466	328	HpnA hopanoid-associated sugar epimerase. The sequ	93.54
TIGR03589	324	PseB UDP-N-acetylglucosamine 4,6-dehydratase. This	93.53
KOG2865|consensus	391		93.52
PLN03209	576	translocon at the inner envelope of chloroplast su	93.36
PRK12549	284	shikimate 5-dehydrogenase; Reviewed	93.34
TIGR03649	285	ergot_EASG ergot alkaloid biosynthesis protein, AF	93.27
PRK15181	348	Vi polysaccharide biosynthesis protein TviC; Provi	92.9
PLN02986	322	cinnamyl-alcohol dehydrogenase family protein	92.62
TIGR00507	270	aroE shikimate 5-dehydrogenase. This model finds p	92.48
COG2910	211	Putative NADH-flavin reductase [General function p	92.3
PRK08306	296	dipicolinate synthase subunit A; Reviewed	92.3
TIGR01179	328	galE UDP-glucose-4-epimerase. This enzyme intercon	92.23
cd01483	143	E1_enzyme_family Superfamily of activating enzymes	91.96
PF00899	135	ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a	91.93
PLN02695	370	GDP-D-mannose-3',5'-epimerase	91.92
PRK09987	299	dTDP-4-dehydrorhamnose reductase; Provisional	91.77
PF01113	124	DapB_N: Dihydrodipicolinate reductase, N-terminus;	91.57
PLN02989	325	cinnamyl-alcohol dehydrogenase family protein	91.56
TIGR01214	287	rmlD dTDP-4-dehydrorhamnose reductase. This enzyme	91.53
PRK11908	347	NAD-dependent epimerase/dehydratase family protein	91.52
PLN02662	322	cinnamyl-alcohol dehydrogenase family protein	91.4
PF01370	236	Epimerase: NAD dependent epimerase/dehydratase fam	91.37
PRK06182	273	short chain dehydrogenase; Validated	91.07
PRK06179	270	short chain dehydrogenase; Provisional	91.07
PRK14027	283	quinate/shikimate dehydrogenase; Provisional	91.07
PRK13301	267	putative L-aspartate dehydrogenase; Provisional	90.99
PLN00198	338	anthocyanidin reductase; Provisional	90.85
PRK12749	288	quinate/shikimate dehydrogenase; Reviewed	90.83
PLN02240	352	UDP-glucose 4-epimerase	90.74
PRK06270	341	homoserine dehydrogenase; Provisional	90.42
cd01078	194	NAD_bind_H4MPT_DH NADP binding domain of methylene	90.39
PRK08057	248	cobalt-precorrin-6x reductase; Reviewed	90.22
PRK08374	336	homoserine dehydrogenase; Provisional	90.08
KOG1205|consensus	282		89.97
cd00757	228	ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1	89.82
COG0036	220	Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate	89.65
PF07994	295	NAD_binding_5: Myo-inositol-1-phosphate synthase;	89.6
PRK07326	237	short chain dehydrogenase; Provisional	89.6
TIGR03450	351	mycothiol_INO1 inositol 1-phosphate synthase, Acti	89.49
PRK09186	256	flagellin modification protein A; Provisional	89.16
PLN02725	306	GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductas	89.13
TIGR01182	204	eda Entner-Doudoroff aldolase. 2-deydro-3-deoxypho	89.08
PRK10217	355	dTDP-glucose 4,6-dehydratase; Provisional	88.99
PRK06349	426	homoserine dehydrogenase; Provisional	88.97
PF02571	249	CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro:	88.75
PLN02686	367	cinnamoyl-CoA reductase	88.43
PF04321	286	RmlD_sub_bind: RmlD substrate binding domain; Inte	88.37
PLN02253	280	xanthoxin dehydrogenase	88.16
COG1712	255	Predicted dinucleotide-utilizing enzyme [General f	87.92
PRK06552	213	keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog	87.87
PRK09134	258	short chain dehydrogenase; Provisional	87.8
PRK05865	854	hypothetical protein; Provisional	87.77
COG2099	257	CobK Precorrin-6x reductase [Coenzyme metabolism]	87.68
PF01408	120	GFO_IDH_MocA: Oxidoreductase family, NAD-binding R	87.67
PLN00016	378	RNA-binding protein; Provisional	87.55
PRK05884	223	short chain dehydrogenase; Provisional	87.4
PRK07856	252	short chain dehydrogenase; Provisional	87.38
PRK09291	257	short chain dehydrogenase; Provisional	87.38
TIGR01472	343	gmd GDP-mannose 4,6-dehydratase. Excluded from thi	87.33
PRK08267	260	short chain dehydrogenase; Provisional	87.23
COG0002	349	ArgC Acetylglutamate semialdehyde dehydrogenase [A	87.23
PF00389	133	2-Hacid_dh: D-isomer specific 2-hydroxyacid dehydr	87.15
PRK08125	660	bifunctional UDP-glucuronic acid decarboxylase/UDP	87.07
COG0300	265	DltE Short-chain dehydrogenases of various substra	87.01
PLN02650	351	dihydroflavonol-4-reductase	86.96
PRK08219	227	short chain dehydrogenase; Provisional	86.94
PRK09009	235	C factor cell-cell signaling protein; Provisional	86.9
PRK07666	239	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	86.9
PRK06138	252	short chain dehydrogenase; Provisional	86.89
PF01118	121	Semialdhyde_dh: Semialdehyde dehydrogenase, NAD bi	86.84
PRK08220	252	2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated	86.81
PRK05867	253	short chain dehydrogenase; Provisional	86.81
PRK06463	255	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	86.76
PRK07453	322	protochlorophyllide oxidoreductase; Validated	86.68
PRK00436	343	argC N-acetyl-gamma-glutamyl-phosphate reductase;	86.68
PRK04207	341	glyceraldehyde-3-phosphate dehydrogenase; Provisio	86.67
PRK08643	256	acetoin reductase; Validated	86.56
PRK10084	352	dTDP-glucose 4,6 dehydratase; Provisional	86.47
PRK11579	346	putative oxidoreductase; Provisional	86.44
TIGR02356	202	adenyl_thiF thiazole biosynthesis adenylyltransfer	86.39
PLN00141	251	Tic62-NAD(P)-related group II protein; Provisional	86.38
TIGR01809	282	Shik-DH-AROM shikimate-5-dehydrogenase, fungal ARO	86.36
PRK13394	262	3-hydroxybutyrate dehydrogenase; Provisional	86.27
PRK06482	276	short chain dehydrogenase; Provisional	86.2
PRK10675	338	UDP-galactose-4-epimerase; Provisional	86.06
PRK05866	293	short chain dehydrogenase; Provisional	86.0
PLN02260	668	probable rhamnose biosynthetic enzyme	85.94
PRK12935	247	acetoacetyl-CoA reductase; Provisional	85.92
PRK06180	277	short chain dehydrogenase; Provisional	85.82
PLN02896	353	cinnamyl-alcohol dehydrogenase	85.82
PRK06123	248	short chain dehydrogenase; Provisional	85.8
TIGR02197	314	heptose_epim ADP-L-glycero-D-manno-heptose-6-epime	85.74
PRK07024	257	short chain dehydrogenase; Provisional	85.63
PRK07454	241	short chain dehydrogenase; Provisional	85.58
PLN02583	297	cinnamoyl-CoA reductase	85.52
PRK12746	254	short chain dehydrogenase; Provisional	85.47
PRK06015	201	keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog	85.43
PRK06935	258	2-deoxy-D-gluconate 3-dehydrogenase; Provisional	85.36
PRK10206	344	putative oxidoreductase; Provisional	85.2
PLN02653	340	GDP-mannose 4,6-dehydratase	85.03
PRK14851	679	hypothetical protein; Provisional	85.03
PRK06114	254	short chain dehydrogenase; Provisional	85.03
PRK07890	258	short chain dehydrogenase; Provisional	84.92
PRK06181	263	short chain dehydrogenase; Provisional	84.92
PF03446	163	NAD_binding_2: NAD binding domain of 6-phosphogluc	84.91
PRK07063	260	short chain dehydrogenase; Provisional	84.9
PRK12937	245	short chain dehydrogenase; Provisional	84.9
PRK05876	275	short chain dehydrogenase; Provisional	84.8
cd05311	226	NAD_bind_2_malic_enz NAD(P) binding domain of mali	84.75
PRK09135	249	pteridine reductase; Provisional	84.7
PRK08223	287	hypothetical protein; Validated	84.69
TIGR02130	275	dapB_plant dihydrodipicolinate reductase. This nar	84.68
TIGR02355	240	moeB molybdopterin synthase sulfurylase MoeB. This	84.65
TIGR02415	254	23BDH acetoin reductases. One member of this famil	84.5
PRK06398	258	aldose dehydrogenase; Validated	84.49
PRK12550	272	shikimate 5-dehydrogenase; Reviewed	84.42
PRK12826	251	3-ketoacyl-(acyl-carrier-protein) reductase; Revie	84.36
PRK08265	261	short chain dehydrogenase; Provisional	84.31
PRK07677	252	short chain dehydrogenase; Provisional	84.29
PRK05565	247	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	84.29
PRK12475	338	thiamine/molybdopterin biosynthesis MoeB-like prot	84.27
PRK06947	248	glucose-1-dehydrogenase; Provisional	84.27
PRK09997	258	hydroxypyruvate isomerase; Provisional	84.18
PRK05597	355	molybdopterin biosynthesis protein MoeB; Validated	84.17
PRK07688	339	thiamine/molybdopterin biosynthesis ThiF/MoeB-like	83.98
PRK07370	258	enoyl-(acyl carrier protein) reductase; Validated	83.97
PRK12939	250	short chain dehydrogenase; Provisional	83.9
PRK07231	251	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	83.89
PRK12825	249	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	83.78
PRK12320	699	hypothetical protein; Provisional	83.74
PRK08063	250	enoyl-(acyl carrier protein) reductase; Provisiona	83.61
PRK08993	253	2-deoxy-D-gluconate 3-dehydrogenase; Validated	83.56
PRK06172	253	short chain dehydrogenase; Provisional	83.48
TIGR03325	262	BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydro	83.48
PRK07877	722	hypothetical protein; Provisional	83.48
TIGR01850	346	argC N-acetyl-gamma-glutamyl-phosphate reductase,	83.46
PRK06392	326	homoserine dehydrogenase; Provisional	83.45
PRK12744	257	short chain dehydrogenase; Provisional	83.44
PRK12367	245	short chain dehydrogenase; Provisional	83.34
PRK07814	263	short chain dehydrogenase; Provisional	83.33
TIGR00872	298	gnd_rel 6-phosphogluconate dehydrogenase (decarbox	83.18
PRK06200	263	2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrog	83.18
PRK08416	260	7-alpha-hydroxysteroid dehydrogenase; Provisional	83.15
PRK06079	252	enoyl-(acyl carrier protein) reductase; Provisiona	83.14
PRK12829	264	short chain dehydrogenase; Provisional	83.04
PRK05650	270	short chain dehydrogenase; Provisional	82.95
PTZ00325	321	malate dehydrogenase; Provisional	82.95
PRK10538	248	malonic semialdehyde reductase; Provisional	82.82
PRK12428	241	3-alpha-hydroxysteroid dehydrogenase; Provisional	82.78
PRK07062	265	short chain dehydrogenase; Provisional	82.75
PF01081	196	Aldolase: KDPG and KHG aldolase; InterPro: IPR0008	82.73
PRK12481	251	2-deoxy-D-gluconate 3-dehydrogenase; Provisional	82.73
PRK08628	258	short chain dehydrogenase; Provisional	82.67
PRK06194	287	hypothetical protein; Provisional	82.56
PRK12745	256	3-ketoacyl-(acyl-carrier-protein) reductase; Provi	82.51
PRK12429	258	3-hydroxybutyrate dehydrogenase; Provisional	82.49
PF00809	210	Pterin_bind: Pterin binding enzyme This Prosite en	82.49
PRK08340	259	glucose-1-dehydrogenase; Provisional	82.46
PRK07774	250	short chain dehydrogenase; Provisional	82.43
COG0673	342	MviM Predicted dehydrogenases and related proteins	82.39
PRK12827	249	short chain dehydrogenase; Provisional	82.39
cd01485	198	E1-1_like Ubiquitin activating enzyme (E1), repeat	82.32
PRK07478	254	short chain dehydrogenase; Provisional	82.2
cd03315	265	MLE_like Muconate lactonizing enzyme (MLE) like su	82.18
PRK05875	276	short chain dehydrogenase; Provisional	82.12
PRK08277	278	D-mannonate oxidoreductase; Provisional	81.96
PRK07577	234	short chain dehydrogenase; Provisional	81.95
PRK07576	264	short chain dehydrogenase; Provisional	81.85
PRK07806	248	short chain dehydrogenase; Provisional	81.64
PRK08264	238	short chain dehydrogenase; Validated	81.63
PRK07411	390	hypothetical protein; Validated	81.62
PRK08263	275	short chain dehydrogenase; Provisional	81.55
PRK07074	257	short chain dehydrogenase; Provisional	81.53
PRK08328	231	hypothetical protein; Provisional	81.4
PRK06196	315	oxidoreductase; Provisional	81.36
PRK06171	266	sorbitol-6-phosphate 2-dehydrogenase; Provisional	81.36
PRK06940	275	short chain dehydrogenase; Provisional	81.34
COG0169	283	AroE Shikimate 5-dehydrogenase [Amino acid transpo	81.26
PRK05693	274	short chain dehydrogenase; Provisional	81.21
PRK05854	313	short chain dehydrogenase; Provisional	81.16
PRK06841	255	short chain dehydrogenase; Provisional	81.0
cd01487	174	E1_ThiF_like E1_ThiF_like. Member of superfamily o	80.97
PRK07201	657	short chain dehydrogenase; Provisional	80.93
PRK09989	258	hypothetical protein; Provisional	80.81
PRK08339	263	short chain dehydrogenase; Provisional	80.79
PRK05690	245	molybdopterin biosynthesis protein MoeB; Provision	80.79
KOG1200|consensus	256		80.79
PRK06197	306	short chain dehydrogenase; Provisional	80.78
PRK05717	255	oxidoreductase; Validated	80.71
PRK08278	273	short chain dehydrogenase; Provisional	80.68
cd05212	140	NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding dom	80.66
PRK12823	260	benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylat	80.54
PRK05993	277	short chain dehydrogenase; Provisional	80.48
PRK07825	273	short chain dehydrogenase; Provisional	80.35
PF00106	167	adh_short: short chain dehydrogenase alcohol dehyd	80.35
PRK08589	272	short chain dehydrogenase; Validated	80.28
PRK08642	253	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	80.19
PRK06139	330	short chain dehydrogenase; Provisional	80.19
PRK07832	272	short chain dehydrogenase; Provisional	80.17
PRK07904	253	short chain dehydrogenase; Provisional	80.15
PRK07523	255	gluconate 5-dehydrogenase; Provisional	80.11
COG0460	333	ThrA Homoserine dehydrogenase [Amino acid transpor	80.08

>KOG2733|consensus

Probab=99.97  E-value=3.6e-32  Score=225.19  Aligned_cols=119  Identities=47%  Similarity=0.803  Sum_probs=107.2

Q ss_pred             HHHHHHhhhhcC---CCCcceEEeeCCCHHHHHHHHhcCcEEEecCCCccchhHHHHHHHHHcCCCeeeCCCChHHHHHH
Q psy12849         17 IFLFLQKASWFG---VRTNRTTVVNTINESSILIMAKKCRVILNCVGPYTWYGEAVVKACIEAKTHHVDITGEPYFMEYM   93 (138)
Q Consensus        17 ~~~~~~~a~~~~---~~~~~~~~~D~~d~~~L~~~~~~~dvVIn~~GPf~~~~~~v~~Aci~~g~hYvDisge~~~~~~~   93 (138)
                      +-.-|+|+.+..   .++..++.+|..|+++|.++++++.|||||+|||..+|++|++||+++|+||||++|||.|++.|
T Consensus        46 L~~vL~~~~~k~~~~ls~~~i~i~D~~n~~Sl~emak~~~vivN~vGPyR~hGE~VVkacienG~~~vDISGEP~f~E~m  125 (423)
T KOG2733|consen   46 LQEVLEKVGEKTGTDLSSSVILIADSANEASLDEMAKQARVIVNCVGPYRFHGEPVVKACIENGTHHVDISGEPQFMERM  125 (423)
T ss_pred             HHHHHHHHhhccCCCcccceEEEecCCCHHHHHHHHhhhEEEEeccccceecCcHHHHHHHHcCCceeccCCCHHHHHHH
Confidence            333444444432   24445999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhHHHHHhCCCEEEeCCCCccchHhHHHHHHHHHhhhhcC
Q psy12849         94 QYEYNTRAQESEVCVVSACGIETLPIDMGVLMLQDSFEGHSG  135 (138)
Q Consensus        94 ~~~~~~~A~~~gv~iv~~~G~d~~p~dl~~~~~~~~~~~~~~  135 (138)
                      +.+||++|+++|+.||.+|||||.|.|+++.++.+.|.+.+|
T Consensus       126 q~kYhd~A~ekGVYIVsaCGfDSIPaDlGv~f~~k~fdg~ln  167 (423)
T KOG2733|consen  126 QLKYHDLAKEKGVYIVSACGFDSIPADLGVMFLRKNFDGVLN  167 (423)
T ss_pred             HHHHHHHHHhcCeEEEeecccCCCCccceeeeehhhccccHH
Confidence            999999999999999999999999999999999999998765

>COG3268 Uncharacterized conserved protein [Function unknown]

Probab=99.95  E-value=1.8e-27  Score=195.84  Aligned_cols=116  Identities=32%  Similarity=0.514  Sum_probs=102.1

Q ss_pred             HHHHHhhhhcCC----CCcceEEeeCCCHHHHHHHHhcCcEEEecCCCccchhHHHHHHHHHcCCCeeeCCCChHHHHHH
Q psy12849         18 FLFLQKASWFGV----RTNRTTVVNTINESSILIMAKKCRVILNCVGPYTWYGEAVVKACIEAKTHHVDITGEPYFMEYM   93 (138)
Q Consensus        18 ~~~~~~a~~~~~----~~~~~~~~D~~d~~~L~~~~~~~dvVIn~~GPf~~~~~~v~~Aci~~g~hYvDisge~~~~~~~   93 (138)
                      .++.|...++..    -..++...++.+++.+.+++++.+||+||+|||..+|+|++++|+.+||||+|++||..|++++
T Consensus        34 aLAgRs~~kl~~l~~~LG~~~~~~p~~~p~~~~~~~~~~~VVlncvGPyt~~g~plv~aC~~~GTdY~DiTGEi~~fe~~  113 (382)
T COG3268          34 ALAGRSSAKLDALRASLGPEAAVFPLGVPAALEAMASRTQVVLNCVGPYTRYGEPLVAACAAAGTDYADITGEIMFFENS  113 (382)
T ss_pred             hhccCCHHHHHHHHHhcCccccccCCCCHHHHHHHHhcceEEEeccccccccccHHHHHHHHhCCCeeeccccHHHHHHH
Confidence            344554444421    2456777778889999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhHHHHHhCCCEEEeCCCCccchHhHHHHHHHHHhhhh
Q psy12849         94 QYEYNTRAQESEVCVVSACGIETLPIDMGVLMLQDSFEGH  133 (138)
Q Consensus        94 ~~~~~~~A~~~gv~iv~~~G~d~~p~dl~~~~~~~~~~~~  133 (138)
                      +..||++|+++|+.|+|+||||++|+|++++.+.+++.+.
T Consensus       114 i~~yh~~A~~~Ga~Ii~~cGFDsIPsDl~v~~l~~~~~~d  153 (382)
T COG3268         114 IDLYHAQAADAGARIIPGCGFDSIPSDLGVYALLKQALPD  153 (382)
T ss_pred             HHHHHHHHHhcCCEEeccCCCCcCccchHHHHHHHhhCcc
Confidence            9999999999999999999999999999998888877654

>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase

Probab=99.87  E-value=3.3e-22  Score=166.34  Aligned_cols=99  Identities=25%  Similarity=0.469  Sum_probs=83.7

Q ss_pred             CCCCcceEEeeCCCHHHHHHHHhcCcEEEecCCCccchhHHHHHHHHHcCCCeeeCCCChHHHHHHHHHhHHHHHhCCCE
Q psy12849         28 GVRTNRTTVVNTINESSILIMAKKCRVILNCVGPYTWYGEAVVKACIEAKTHHVDITGEPYFMEYMQYEYNTRAQESEVC  107 (138)
Q Consensus        28 ~~~~~~~~~~D~~d~~~L~~~~~~~dvVIn~~GPf~~~~~~v~~Aci~~g~hYvDisge~~~~~~~~~~~~~~A~~~gv~  107 (138)
                      ...+++++++|+.|+++|.++++++|+||||+|||  ++.+++++|+++|+||||.+.    +...+.+||++|+++|++
T Consensus        44 ~~~~~~~~~~d~~~~~~l~~~~~~~dvVin~~gp~--~~~~v~~~~i~~g~~yvD~~~----~~~~~~~l~~~a~~~g~~  117 (386)
T PF03435_consen   44 LGDRVEAVQVDVNDPESLAELLRGCDVVINCAGPF--FGEPVARACIEAGVHYVDTSY----VTEEMLALDEEAKEAGVT  117 (386)
T ss_dssp             TTTTEEEEE--TTTHHHHHHHHTTSSEEEE-SSGG--GHHHHHHHHHHHT-EEEESS-----HHHHHHHCHHHHHHTTSE
T ss_pred             cccceeEEEEecCCHHHHHHHHhcCCEEEECCccc--hhHHHHHHHHHhCCCeeccch----hHHHHHHHHHHHHhhCCE
Confidence            44789999999999999999999999999999998  668999999999999999655    333346999999999999


Q ss_pred             EEeCCCCccchHhHHHHHHHHHhhh
Q psy12849        108 VVSACGIETLPIDMGVLMLQDSFEG  132 (138)
Q Consensus       108 iv~~~G~d~~p~dl~~~~~~~~~~~  132 (138)
                      ++++|||+|+++++++.+++++|..
T Consensus       118 ~l~~~G~~PGl~~~~a~~~~~~~~~  142 (386)
T PF03435_consen  118 ALPGCGFDPGLSNLLARYAADELDA  142 (386)
T ss_dssp             EE-S-BTTTBHHHHHHHHHHHHHHH
T ss_pred             EEeCcccccchHHHHHHHHHHHhhh
Confidence            9999999999999999999999983

Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.

>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]

Probab=99.82  E-value=8.7e-20  Score=153.77  Aligned_cols=97  Identities=14%  Similarity=0.249  Sum_probs=90.1

Q ss_pred             CCcceEEeeCCCHHHHHHHHhcCcEEEecCCCccchhHHHHHHHHHcCCCeeeCCCChHHHHHHHHHhHHHHHhCCCEEE
Q psy12849         30 RTNRTTVVNTINESSILIMAKKCRVILNCVGPYTWYGEAVVKACIEAKTHHVDITGEPYFMEYMQYEYNTRAQESEVCVV  109 (138)
Q Consensus        30 ~~~~~~~~D~~d~~~L~~~~~~~dvVIn~~GPf~~~~~~v~~Aci~~g~hYvDisge~~~~~~~~~~~~~~A~~~gv~iv  109 (138)
                      .+++++++|+.|.+++.+++++.|+||||++||..  ..+++||+++|+||+|+|...+..    ++|+++|+++|+++|
T Consensus        47 ~~v~~~~vD~~d~~al~~li~~~d~VIn~~p~~~~--~~i~ka~i~~gv~yvDts~~~~~~----~~~~~~a~~Agit~v  120 (389)
T COG1748          47 GKVEALQVDAADVDALVALIKDFDLVINAAPPFVD--LTILKACIKTGVDYVDTSYYEEPP----WKLDEEAKKAGITAV  120 (389)
T ss_pred             ccceeEEecccChHHHHHHHhcCCEEEEeCCchhh--HHHHHHHHHhCCCEEEcccCCchh----hhhhHHHHHcCeEEE
Confidence            58999999999999999999999999999976654  489999999999999999987773    589999999999999


Q ss_pred             eCCCCccchHhHHHHHHHHHhhh
Q psy12849        110 SACGIETLPIDMGVLMLQDSFEG  132 (138)
Q Consensus       110 ~~~G~d~~p~dl~~~~~~~~~~~  132 (138)
                      ++|||||+.+++++.+++++|++
T Consensus       121 ~~~G~dPGi~nv~a~~a~~~~~~  143 (389)
T COG1748         121 LGCGFDPGITNVLAAYAAKELFD  143 (389)
T ss_pred             cccCcCcchHHHHHHHHHHHhhc
Confidence            99999999999999999999985

>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase

Probab=99.48  E-value=9.9e-14  Score=128.57  Aligned_cols=97  Identities=20%  Similarity=0.292  Sum_probs=85.3

Q ss_pred             CCcceEEeeCCCHHHHHHHHhcCcEEEecCCCccchhHHHHHHHHHcCCCeeeCCCChHHHHHHHHHhHHHHHhCCCEEE
Q psy12849         30 RTNRTTVVNTINESSILIMAKKCRVILNCVGPYTWYGEAVVKACIEAKTHHVDITGEPYFMEYMQYEYNTRAQESEVCVV  109 (138)
Q Consensus        30 ~~~~~~~~D~~d~~~L~~~~~~~dvVIn~~GPf~~~~~~v~~Aci~~g~hYvDisge~~~~~~~~~~~~~~A~~~gv~iv  109 (138)
                      +++.++++|+.|.++|.++++++|+||+|+ |+..+ ..++++|+++|+||+|.+...+-+    .+++++|+++|++++
T Consensus       627 ~~~~~v~lDv~D~e~L~~~v~~~DaVIsal-P~~~H-~~VAkaAieaGkHvv~eky~~~e~----~~L~e~Ak~AGV~~m  700 (1042)
T PLN02819        627 ENAEAVQLDVSDSESLLKYVSQVDVVISLL-PASCH-AVVAKACIELKKHLVTASYVSEEM----SALDSKAKEAGITIL  700 (1042)
T ss_pred             CCCceEEeecCCHHHHHHhhcCCCEEEECC-Cchhh-HHHHHHHHHcCCCEEECcCCHHHH----HHHHHHHHHcCCEEE
Confidence            357889999999999999999999999999 66655 699999999999999998654443    477899999999999


Q ss_pred             eCCCCccchHhHHHHHHHHHhhh
Q psy12849        110 SACGIETLPIDMGVLMLQDSFEG  132 (138)
Q Consensus       110 ~~~G~d~~p~dl~~~~~~~~~~~  132 (138)
                      +++||||+...+++..+.+++..
T Consensus       701 ~e~GlDPGid~~lA~~~Id~~~~  723 (1042)
T PLN02819        701 CEMGLDPGIDHMMAMKMIDDAHE  723 (1042)
T ss_pred             ECCccCHHHHHHHHHHHHHhhcc
Confidence            99999999999999988888743

>KOG0172|consensus

Probab=98.61  E-value=1.3e-07  Score=80.12  Aligned_cols=100  Identities=17%  Similarity=0.195  Sum_probs=88.5

Q ss_pred             HHHHhhhhcCC-CCcceEEeeCCCHH-HHHHHHhcCcEEEecCCCccchhHHHHHHHHHcCCCeeeCCCChHHHHHHHHH
Q psy12849         19 LFLQKASWFGV-RTNRTTVVNTINES-SILIMAKKCRVILNCVGPYTWYGEAVVKACIEAKTHHVDITGEPYFMEYMQYE   96 (138)
Q Consensus        19 ~~~~~a~~~~~-~~~~~~~~D~~d~~-~L~~~~~~~dvVIn~~GPf~~~~~~v~~Aci~~g~hYvDisge~~~~~~~~~~   96 (138)
                      +++++|+.+.. -.++.+.+|+.+++ .|++.+++.|+|++.. ||..+ ..|+++|+..+.|.+..|.-.+-+    ++
T Consensus        34 ~~~~~~~~~~~~~~~~av~ldv~~~~~~L~~~v~~~D~viSLl-P~t~h-~lVaK~~i~~~~~~vtsSyv~pe~----~~  107 (445)
T KOG0172|consen   34 RTLKDAEALVKGINIKAVSLDVADEELALRKEVKPLDLVISLL-PYTFH-PLVAKGCIITKEDSVTSSYVDPEL----EE  107 (445)
T ss_pred             hhHHHHHHHhcCCCccceEEEccchHHHHHhhhcccceeeeec-cchhh-HHHHHHHHHhhcccccccccCHHH----Hh
Confidence            46778888754 45999999999998 9999999999999999 99988 589999999999999998877665    46


Q ss_pred             hHHHHHhCCCEEEeCCCCccchHhHHHH
Q psy12849         97 YNTRAQESEVCVVSACGIETLPIDMGVL  124 (138)
Q Consensus        97 ~~~~A~~~gv~iv~~~G~d~~p~dl~~~  124 (138)
                      +++.++.+|++++...|+||+.-.|.+.
T Consensus       108 L~~~~v~AG~ti~~e~gldpGidhm~a~  135 (445)
T KOG0172|consen  108 LEKAAVPAGSTIMNEIGLDPGIDHMPAM  135 (445)
T ss_pred             hhhhccCCCceEecccccCcchhhhhhh
Confidence            6788999999999999999999998885

>PRK00048 dihydrodipicolinate reductase; Provisional

Probab=97.49  E-value=0.00013  Score=58.43  Aligned_cols=86  Identities=13%  Similarity=0.055  Sum_probs=54.4

Q ss_pred             HHHHHHHHhcCcEEEecCCCccchhHHHHHHHHHcCCCeeeCCCChHHHHHHHHHhHHHHHhCCCEEEeCCCCccchHhH
Q psy12849         42 ESSILIMAKKCRVILNCVGPYTWYGEAVVKACIEAKTHHVDITGEPYFMEYMQYEYNTRAQESEVCVVSACGIETLPIDM  121 (138)
Q Consensus        42 ~~~L~~~~~~~dvVIn~~GPf~~~~~~v~~Aci~~g~hYvDisge~~~~~~~~~~~~~~A~~~gv~iv~~~G~d~~p~dl  121 (138)
                      ..++.++++.+|+||.++-|...  .++++.|+++|+|.|-  |...|..+-.+++.+.+++.++.+.+..++.+.+...
T Consensus        51 ~~dl~~ll~~~DvVid~t~p~~~--~~~~~~al~~G~~vvi--gttG~s~~~~~~l~~aa~~~~v~~s~n~s~g~~~~~~  126 (257)
T PRK00048         51 TDDLEAVLADADVLIDFTTPEAT--LENLEFALEHGKPLVI--GTTGFTEEQLAELEEAAKKIPVVIAPNFSIGVNLLMK  126 (257)
T ss_pred             cCCHHHhccCCCEEEECCCHHHH--HHHHHHHHHcCCCEEE--ECCCCCHHHHHHHHHHhcCCCEEEECcchHHHHHHHH
Confidence            34577777889999999966543  6899999999999993  3333333323455554444555555555543333334


Q ss_pred             HHHHHHHHhh
Q psy12849        122 GVLMLQDSFE  131 (138)
Q Consensus       122 ~~~~~~~~~~  131 (138)
                      .+..+++.|.
T Consensus       127 l~~~aa~~l~  136 (257)
T PRK00048        127 LAEKAAKYLG  136 (257)
T ss_pred             HHHHHHHhcC
Confidence            4456666664

>TIGR01921 DAP-DH diaminopimelate dehydrogenase

Probab=97.07  E-value=0.0018  Score=54.09  Aligned_cols=70  Identities=10%  Similarity=-0.029  Sum_probs=52.7

Q ss_pred             HHHHHhcCcEEEecCCCccchhHHHHHHHHHcCCCeeeCCCChHHH--HHHHHHhHHHHHhCCCEEEeCCCCccch
Q psy12849         45 ILIMAKKCRVILNCVGPYTWYGEAVVKACIEAKTHHVDITGEPYFM--EYMQYEYNTRAQESEVCVVSACGIETLP  118 (138)
Q Consensus        45 L~~~~~~~dvVIn~~GPf~~~~~~v~~Aci~~g~hYvDisge~~~~--~~~~~~~~~~A~~~gv~iv~~~G~d~~p  118 (138)
                      ...++.+.|+|+-|. |...+ .+.+..++++|.|-||...  ++.  .+...+.++.|++.|-..+.++||||+-
T Consensus        54 ~~e~l~~iDVViIct-Ps~th-~~~~~~~L~aG~NVV~s~~--~h~~~p~~~~~ld~AAk~~g~vsvi~~GwDPG~  125 (324)
T TIGR01921        54 DEKHLDDVDVLILCM-GSATD-IPEQAPYFAQFANTVDSFD--NHRDIPRHRQVMDAAAKAAGNVSVISTGWDPGM  125 (324)
T ss_pred             HHHhccCCCEEEEcC-CCccC-HHHHHHHHHcCCCEEECCC--cccCCHHHHHHHHHHHHHcCCEEEEECCCCcCh
Confidence            334457899999997 54555 5788889999999999964  232  2445577788887777788889999886

This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.

>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA

Probab=97.01  E-value=0.0014  Score=50.40  Aligned_cols=52  Identities=12%  Similarity=0.107  Sum_probs=42.1

Q ss_pred             CCcceEEeeCCCHHHHHHHHhcCcEEEecCCCc----cchhHHHHHHHHHcCCCee
Q psy12849         30 RTNRTTVVNTINESSILIMAKKCRVILNCVGPY----TWYGEAVVKACIEAKTHHV   81 (138)
Q Consensus        30 ~~~~~~~~D~~d~~~L~~~~~~~dvVIn~~GPf----~~~~~~v~~Aci~~g~hYv   81 (138)
                      ..++++..|..|+++|.+.++++|.|+.+.++.    ......+++||.++|+.++
T Consensus        43 ~g~~vv~~d~~~~~~l~~al~g~d~v~~~~~~~~~~~~~~~~~li~Aa~~agVk~~   98 (233)
T PF05368_consen   43 LGAEVVEADYDDPESLVAALKGVDAVFSVTPPSHPSELEQQKNLIDAAKAAGVKHF   98 (233)
T ss_dssp             TTTEEEES-TT-HHHHHHHHTTCSEEEEESSCSCCCHHHHHHHHHHHHHHHT-SEE
T ss_pred             ccceEeecccCCHHHHHHHHcCCceEEeecCcchhhhhhhhhhHHHhhhccccceE
Confidence            356789999999999999999999999999855    2346789999999999875

NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....

>PF01073 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/isomerase family; InterPro: IPR002225 The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyses the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones

Probab=96.81  E-value=0.0029  Score=51.06  Aligned_cols=49  Identities=14%  Similarity=0.192  Sum_probs=42.0

Q ss_pred             ceEEeeCCCHHHHHHHHhcCcEEEecCCCccchh---------------HHHHHHHHHcCCCee
Q psy12849         33 RTTVVNTINESSILIMAKKCRVILNCVGPYTWYG---------------EAVVKACIEAKTHHV   81 (138)
Q Consensus        33 ~~~~~D~~d~~~L~~~~~~~dvVIn~~GPf~~~~---------------~~v~~Aci~~g~hYv   81 (138)
                      .+++.|+.|++++.+.++++|+|++++.|....+               ..++++|.+.|+.++
T Consensus        48 ~~~~~Di~d~~~l~~a~~g~d~V~H~Aa~~~~~~~~~~~~~~~vNV~GT~nvl~aa~~~~Vkrl  111 (280)
T PF01073_consen   48 EYIQGDITDPESLEEALEGVDVVFHTAAPVPPWGDYPPEEYYKVNVDGTRNVLEAARKAGVKRL  111 (280)
T ss_pred             eEEEeccccHHHHHHHhcCCceEEEeCccccccCcccHHHHHHHHHHHHHHHHHHHHHcCCCEE
Confidence            3889999999999999999999999988754433               478999999998863

3Beta_HSD; GO: 0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity, 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0006694 steroid biosynthetic process, 0055114 oxidation-reduction process

>PRK13304 L-aspartate dehydrogenase; Reviewed

Probab=96.48  E-value=0.011  Score=47.36  Aligned_cols=64  Identities=14%  Similarity=0.222  Sum_probs=49.0

Q ss_pred             HHHHHhcCcEEEecCCCccchhHHHHHHHHHcCCCeeeCCC----ChHHHHHHHHHhHHHHHhCCCEEEeCCCC
Q psy12849         45 ILIMAKKCRVILNCVGPYTWYGEAVVKACIEAKTHHVDITG----EPYFMEYMQYEYNTRAQESEVCVVSACGI  114 (138)
Q Consensus        45 L~~~~~~~dvVIn~~GPf~~~~~~v~~Aci~~g~hYvDisg----e~~~~~~~~~~~~~~A~~~gv~iv~~~G~  114 (138)
                      +.+++.++|+|+.|++|...  ...++.++++|.|.+.++-    +.++.    .++.+.|+++|+.+....|.
T Consensus        55 ~~ell~~~DvVvi~a~~~~~--~~~~~~al~~Gk~Vvv~s~gAl~d~~~~----~~L~~aA~~~g~~l~v~sga  122 (265)
T PRK13304         55 IDELVEDVDLVVECASVNAV--EEVVPKSLENGKDVIIMSVGALADKELF----LKLYKLAKENNCKIYLPSGA  122 (265)
T ss_pred             HHHHhcCCCEEEEcCChHHH--HHHHHHHHHcCCCEEEEchHHhcCHHHH----HHHHHHHHHcCCEEEEeCch
Confidence            45556889999999976543  5788999999999999764    44444    35557899999998887774

>CHL00194 ycf39 Ycf39; Provisional

Probab=96.39  E-value=0.031  Score=45.15  Aligned_cols=55  Identities=11%  Similarity=-0.014  Sum_probs=43.7

Q ss_pred             CCcceEEeeCCCHHHHHHHHhcCcEEEecCCCccch-----------hHHHHHHHHHcCC-CeeeCC
Q psy12849         30 RTNRTTVVNTINESSILIMAKKCRVILNCVGPYTWY-----------GEAVVKACIEAKT-HHVDIT   84 (138)
Q Consensus        30 ~~~~~~~~D~~d~~~L~~~~~~~dvVIn~~GPf~~~-----------~~~v~~Aci~~g~-hYvDis   84 (138)
                      ..++++..|+.|++++.+.++++|+|||++++....           ...++++|.++|+ ++|=+|
T Consensus        43 ~~v~~v~~Dl~d~~~l~~al~g~d~Vi~~~~~~~~~~~~~~~~~~~~~~~l~~aa~~~gvkr~I~~S  109 (317)
T CHL00194         43 WGAELVYGDLSLPETLPPSFKGVTAIIDASTSRPSDLYNAKQIDWDGKLALIEAAKAAKIKRFIFFS  109 (317)
T ss_pred             cCCEEEECCCCCHHHHHHHHCCCCEEEECCCCCCCCccchhhhhHHHHHHHHHHHHHcCCCEEEEec
Confidence            367899999999999999999999999998753211           1478999999997 555443

>TIGR00036 dapB dihydrodipicolinate reductase

Probab=96.26  E-value=0.019  Score=46.26  Aligned_cols=65  Identities=18%  Similarity=0.087  Sum_probs=48.3

Q ss_pred             HhcCcEEEecCCCccchhHHHHHHHHHcCCCeee-CCCChHHHHHHHHHhHHHHHhCCCEEEeCCCCccch
Q psy12849         49 AKKCRVILNCVGPYTWYGEAVVKACIEAKTHHVD-ITGEPYFMEYMQYEYNTRAQESEVCVVSACGIETLP  118 (138)
Q Consensus        49 ~~~~dvVIn~~GPf~~~~~~v~~Aci~~g~hYvD-isge~~~~~~~~~~~~~~A~~~gv~iv~~~G~d~~p  118 (138)
                      ...+|+||.|..|...  ...++.|+++|+|.|- .+|-   ..+-..++.+.|+++|+.++.+..|+.+.
T Consensus        66 ~~~~DvVIdfT~p~~~--~~~~~~al~~g~~vVigttg~---~~e~~~~l~~aA~~~g~~v~~a~NfSlGv  131 (266)
T TIGR00036        66 ETDPDVLIDFTTPEGV--LNHLKFALEHGVRLVVGTTGF---SEEDKQELADLAEKAGIAAVIAPNFSIGV  131 (266)
T ss_pred             cCCCCEEEECCChHHH--HHHHHHHHHCCCCEEEECCCC---CHHHHHHHHHHHhcCCccEEEECcccHHH
Confidence            4568999999976433  5799999999999995 4453   22223466778899999999988883333

>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase

Probab=96.14  E-value=0.0038  Score=45.10  Aligned_cols=62  Identities=8%  Similarity=-0.034  Sum_probs=44.5

Q ss_pred             HHHHhcCcEEEecCCCccc--hhHHHHHHHHHcCCCeeeCCCChHHHHHHHHHhHHHHHhCCCEEEeCC
Q psy12849         46 LIMAKKCRVILNCVGPYTW--YGEAVVKACIEAKTHHVDITGEPYFMEYMQYEYNTRAQESEVCVVSAC  112 (138)
Q Consensus        46 ~~~~~~~dvVIn~~GPf~~--~~~~v~~Aci~~g~hYvDisge~~~~~~~~~~~~~~A~~~gv~iv~~~  112 (138)
                      .++++++|+||+|++|...  ...+..+.+++.|+..+|++..+...     .+.+++++.|+.+++|-
T Consensus        76 ~~~~~~~Dvvi~~~~~~~~~~~~~~~~~~~~~~~~~v~D~~~~~~~~-----~l~~~~~~~g~~~v~g~  139 (155)
T cd01065          76 EELLAEADLIINTTPVGMKPGDELPLPPSLLKPGGVVYDVVYNPLET-----PLLKEARALGAKTIDGL  139 (155)
T ss_pred             hhccccCCEEEeCcCCCCCCCCCCCCCHHHcCCCCEEEEcCcCCCCC-----HHHHHHHHCCCceeCCH
Confidence            3447899999999976553  12344467789999999997765433     44577888898887753

Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann

>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B

Probab=95.99  E-value=0.023  Score=41.74  Aligned_cols=53  Identities=13%  Similarity=0.150  Sum_probs=43.0

Q ss_pred             CCCcceEEeeCCCHHHHHHHHhcCcEEEecCCCccc---hhHHHHHHHHHcCC-Cee
Q psy12849         29 VRTNRTTVVNTINESSILIMAKKCRVILNCVGPYTW---YGEAVVKACIEAKT-HHV   81 (138)
Q Consensus        29 ~~~~~~~~~D~~d~~~L~~~~~~~dvVIn~~GPf~~---~~~~v~~Aci~~g~-hYv   81 (138)
                      ..++++++.|+.|++++.+.++++|+|++++||-..   .-..++++|-++|+ ++|
T Consensus        38 ~~~~~~~~~d~~d~~~~~~al~~~d~vi~~~~~~~~~~~~~~~~~~a~~~~~~~~~v   94 (183)
T PF13460_consen   38 SPGVEIIQGDLFDPDSVKAALKGADAVIHAAGPPPKDVDAAKNIIEAAKKAGVKRVV   94 (183)
T ss_dssp             CTTEEEEESCTTCHHHHHHHHTTSSEEEECCHSTTTHHHHHHHHHHHHHHTTSSEEE
T ss_pred             ccccccceeeehhhhhhhhhhhhcchhhhhhhhhcccccccccccccccccccccce
Confidence            468999999999999999999999999999987443   13467777777776 444

...

>PRK12548 shikimate 5-dehydrogenase; Provisional

Probab=95.82  E-value=0.021  Score=46.36  Aligned_cols=89  Identities=9%  Similarity=0.033  Sum_probs=61.5

Q ss_pred             CcceEEeeCCCHHHHHHHHhcCcEEEecCCCccchh----HHH-HHHHHHcCCCeeeCCCChHHHHHHHHHhHHHHHhCC
Q psy12849         31 TNRTTVVNTINESSILIMAKKCRVILNCVGPYTWYG----EAV-VKACIEAKTHHVDITGEPYFMEYMQYEYNTRAQESE  105 (138)
Q Consensus        31 ~~~~~~~D~~d~~~L~~~~~~~dvVIn~~GPf~~~~----~~v-~~Aci~~g~hYvDisge~~~~~~~~~~~~~~A~~~g  105 (138)
                      +..+..+|+++.+++.+.++.+|++|||. |-.-.+    .++ -...+..+...+|+...|.-+     .|-..|+++|
T Consensus       179 ~~~~~~~d~~~~~~~~~~~~~~DilINaT-p~Gm~~~~~~~~~~~~~~l~~~~~v~D~vY~P~~T-----~ll~~A~~~G  252 (289)
T PRK12548        179 ECIVNVYDLNDTEKLKAEIASSDILVNAT-LVGMKPNDGETNIKDTSVFRKDLVVADTVYNPKKT-----KLLEDAEAAG  252 (289)
T ss_pred             CceeEEechhhhhHHHhhhccCCEEEEeC-CCCCCCCCCCCCCCcHHhcCCCCEEEEecCCCCCC-----HHHHHHHHCC
Confidence            34566789988888999999999999999 432211    122 234567778899998876543     3336789999


Q ss_pred             CEEEeCCCCccchHhHHHHHHHHHhhh
Q psy12849        106 VCVVSACGIETLPIDMGVLMLQDSFEG  132 (138)
Q Consensus       106 v~iv~~~G~d~~p~dl~~~~~~~~~~~  132 (138)
                      ..++.|.+       |+.+.++.+|+=
T Consensus       253 ~~~~~G~~-------ML~~Qa~~~f~l  272 (289)
T PRK12548        253 CKTVGGLG-------MLLWQGAEAYKL  272 (289)
T ss_pred             CeeeCcHH-------HHHHHHHHHHHH
Confidence            99888765       455555555543

>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway

Probab=95.79  E-value=0.034  Score=38.73  Aligned_cols=63  Identities=14%  Similarity=0.140  Sum_probs=42.7

Q ss_pred             HHHHHh--cCcEEEecCCCccchhHHHHHHHHHcCCCeeeCCCChHHHHHHHHHhHHHHHhCCCEEE
Q psy12849         45 ILIMAK--KCRVILNCVGPYTWYGEAVVKACIEAKTHHVDITGEPYFMEYMQYEYNTRAQESEVCVV  109 (138)
Q Consensus        45 L~~~~~--~~dvVIn~~GPf~~~~~~v~~Aci~~g~hYvDisge~~~~~~~~~~~~~~A~~~gv~iv  109 (138)
                      +.++++  ..|+||.|+++  .......+.+++.|+|.|-.+=..-.-.....++.+.|+++|+.+.
T Consensus        51 ~~~~~~~~~~dvvVE~t~~--~~~~~~~~~~L~~G~~VVt~nk~ala~~~~~~~L~~~A~~~g~~~~  115 (117)
T PF03447_consen   51 LEELIDDPDIDVVVECTSS--EAVAEYYEKALERGKHVVTANKGALADEALYEELREAARKNGVRIY  115 (117)
T ss_dssp             HHHHHTHTT-SEEEE-SSC--HHHHHHHHHHHHTTCEEEES-HHHHHSHHHHHHHHHHHHHHT-EEE
T ss_pred             HHHHhcCcCCCEEEECCCc--hHHHHHHHHHHHCCCeEEEECHHHhhhHHHHHHHHHHHHHcCCEEE
Confidence            556666  79999999765  3446789999999999999854432211233577788999998775

Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....

>TIGR00715 precor6x_red precorrin-6x reductase

Probab=95.67  E-value=0.025  Score=45.63  Aligned_cols=51  Identities=12%  Similarity=0.219  Sum_probs=45.0

Q ss_pred             ceEEeeCCCHHHHHHHHhc--CcEEEecCCCccch-hHHHHHHHHHcCCCeeeC
Q psy12849         33 RTTVVNTINESSILIMAKK--CRVILNCVGPYTWY-GEAVVKACIEAKTHHVDI   83 (138)
Q Consensus        33 ~~~~~D~~d~~~L~~~~~~--~dvVIn~~GPf~~~-~~~v~~Aci~~g~hYvDi   83 (138)
                      ..+..+..|.+++.+++++  .++||+++.||... ...+.++|.+.|.+|+..
T Consensus        45 ~~v~~g~l~~~~l~~~l~~~~i~~VIDAtHPfA~~is~~a~~a~~~~~ipylR~   98 (256)
T TIGR00715        45 LTVHTGALDPQELREFLKRHSIDILVDATHPFAAQITTNATAVCKELGIPYVRF   98 (256)
T ss_pred             ceEEECCCCHHHHHHHHHhcCCCEEEEcCCHHHHHHHHHHHHHHHHhCCcEEEE
Confidence            3566788899999999986  79999999999944 789999999999999987

This enzyme was found to be a monomer by gel filtration.

>PLN02214 cinnamoyl-CoA reductase

Probab=95.66  E-value=0.03  Score=45.96  Aligned_cols=49  Identities=16%  Similarity=0.153  Sum_probs=40.6

Q ss_pred             CCcceEEeeCCCHHHHHHHHhcCcEEEecCCCccch-----------hHHHHHHHHHcCC
Q psy12849         30 RTNRTTVVNTINESSILIMAKKCRVILNCVGPYTWY-----------GEAVVKACIEAKT   78 (138)
Q Consensus        30 ~~~~~~~~D~~d~~~L~~~~~~~dvVIn~~GPf~~~-----------~~~v~~Aci~~g~   78 (138)
                      .+++++..|+.|++++.++++++|+|||++||+...           -..++++|.+.|+
T Consensus        60 ~~~~~~~~Dl~d~~~~~~~~~~~d~Vih~A~~~~~~~~~~~~~nv~gt~~ll~aa~~~~v  119 (342)
T PLN02214         60 ERLILCKADLQDYEALKAAIDGCDGVFHTASPVTDDPEQMVEPAVNGAKFVINAAAEAKV  119 (342)
T ss_pred             CcEEEEecCcCChHHHHHHHhcCCEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            357788999999999999999999999999987431           2357888888875

>KOG1502|consensus

Probab=95.48  E-value=0.032  Score=46.69  Aligned_cols=48  Identities=19%  Similarity=0.302  Sum_probs=42.6

Q ss_pred             CCcceEEeeCCCHHHHHHHHhcCcEEEecCCCccchhH---------------HHHHHHHHcC
Q psy12849         30 RTNRTTVVNTINESSILIMAKKCRVILNCVGPYTWYGE---------------AVVKACIEAK   77 (138)
Q Consensus        30 ~~~~~~~~D~~d~~~L~~~~~~~dvVIn~~GPf~~~~~---------------~v~~Aci~~g   77 (138)
                      +++.....|+.|++++.+.++|||.|+++|-|+.....               .|+++|.++.
T Consensus        57 ~~l~l~~aDL~d~~sf~~ai~gcdgVfH~Asp~~~~~~~~e~~li~pav~Gt~nVL~ac~~~~  119 (327)
T KOG1502|consen   57 ERLKLFKADLLDEGSFDKAIDGCDGVFHTASPVDFDLEDPEKELIDPAVKGTKNVLEACKKTK  119 (327)
T ss_pred             ccceEEeccccccchHHHHHhCCCEEEEeCccCCCCCCCcHHhhhhHHHHHHHHHHHHHhccC
Confidence            45899999999999999999999999999999876432               6899999988

>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase

Probab=95.21  E-value=0.068  Score=45.01  Aligned_cols=55  Identities=13%  Similarity=0.126  Sum_probs=42.8

Q ss_pred             CCcceEEeeCCCHHHHHHHHh----cCcEEEecCCCccc-----------hhHHHHHHHHHcCCC-eeeCC
Q psy12849         30 RTNRTTVVNTINESSILIMAK----KCRVILNCVGPYTW-----------YGEAVVKACIEAKTH-HVDIT   84 (138)
Q Consensus        30 ~~~~~~~~D~~d~~~L~~~~~----~~dvVIn~~GPf~~-----------~~~~v~~Aci~~g~h-YvDis   84 (138)
                      .+++++++|+.|++++.++++    ++|+||||+|+...           ....++++|.+.|+. +|=+|
T Consensus       111 ~~v~~v~~Dl~d~~~l~~~~~~~~~~~D~Vi~~aa~~~~~~~~~~~vn~~~~~~ll~aa~~~gv~r~V~iS  181 (390)
T PLN02657        111 PGAEVVFGDVTDADSLRKVLFSEGDPVDVVVSCLASRTGGVKDSWKIDYQATKNSLDAGREVGAKHFVLLS  181 (390)
T ss_pred             CCceEEEeeCCCHHHHHHHHHHhCCCCcEEEECCccCCCCCccchhhHHHHHHHHHHHHHHcCCCEEEEEe
Confidence            367899999999999999999    58999999986321           124688999999875 54443

>PRK13303 L-aspartate dehydrogenase; Provisional

Probab=95.12  E-value=0.079  Score=42.55  Aligned_cols=66  Identities=12%  Similarity=0.087  Sum_probs=47.7

Q ss_pred             hcCcEEEecCCCccchhHHHHHHHHHcCCCeeeCCCChHHHHHHHHHhHHHHHhCCCEEEeCCCCccc
Q psy12849         50 KKCRVILNCVGPYTWYGEAVVKACIEAKTHHVDITGEPYFMEYMQYEYNTRAQESEVCVVSACGIETL  117 (138)
Q Consensus        50 ~~~dvVIn~~GPf~~~~~~v~~Aci~~g~hYvDisge~~~~~~~~~~~~~~A~~~gv~iv~~~G~d~~  117 (138)
                      ...|+|+.|++|- .+ ...++.|+++|+|.+-.+-..-.-......+.+.|+++|..+....|+..+
T Consensus        60 ~~~DvVve~t~~~-~~-~e~~~~aL~aGk~Vvi~s~~Al~d~~~~~~L~~~A~~~g~~l~v~sga~gg  125 (265)
T PRK13303         60 QRPDLVVECAGHA-AL-KEHVVPILKAGIDCAVISVGALADEALRERLEQAAEAGGARLHLLSGAIGG  125 (265)
T ss_pred             cCCCEEEECCCHH-HH-HHHHHHHHHcCCCEEEeChHHhcCHHHHHHHHHHHHHCCCEEEEeChHhhC
Confidence            5689999999775 34 589999999999999754321011222345667899999999998887544

>PRK13302 putative L-aspartate dehydrogenase; Provisional

Probab=95.06  E-value=0.096  Score=42.29  Aligned_cols=65  Identities=9%  Similarity=0.126  Sum_probs=47.8

Q ss_pred             HHHHHhcCcEEEecCCCccchhHHHHHHHHHcCCCeeeCCCChHHHHHHHHHhHHHHHhCCCEEEeCCCC
Q psy12849         45 ILIMAKKCRVILNCVGPYTWYGEAVVKACIEAKTHHVDITGEPYFMEYMQYEYNTRAQESEVCVVSACGI  114 (138)
Q Consensus        45 L~~~~~~~dvVIn~~GPf~~~~~~v~~Aci~~g~hYvDisge~~~~~~~~~~~~~~A~~~gv~iv~~~G~  114 (138)
                      +.++++++|+|+-|+++ ..+ ..+++.|+++|.|.+..+-. .. .+. .++-+.|+++|..+....||
T Consensus        61 ~eell~~~D~Vvi~tp~-~~h-~e~~~~aL~aGk~Vi~~s~g-al-~~~-~~L~~~A~~~g~~l~v~sGa  125 (271)
T PRK13302         61 LDQLATHADIVVEAAPA-SVL-RAIVEPVLAAGKKAIVLSVG-AL-LRN-EDLIDLARQNGGQIIVPTGA  125 (271)
T ss_pred             HHHHhcCCCEEEECCCc-HHH-HHHHHHHHHcCCcEEEecch-hH-HhH-HHHHHHHHHcCCEEEEcchH
Confidence            44556789999999955 445 57889999999999976422 11 122 36668899999999887776

>TIGR03855 NAD_NadX aspartate dehydrogenase

Probab=94.99  E-value=0.1  Score=41.47  Aligned_cols=67  Identities=9%  Similarity=0.073  Sum_probs=49.3

Q ss_pred             CCHHHHHHHHhcCcEEEecCCCccchhHHHHHHHHHcCCCeeeCCC----ChHHHHHHHHHhHHHHHhCCCEEEeCCCC
Q psy12849         40 INESSILIMAKKCRVILNCVGPYTWYGEAVVKACIEAKTHHVDITG----EPYFMEYMQYEYNTRAQESEVCVVSACGI  114 (138)
Q Consensus        40 ~d~~~L~~~~~~~dvVIn~~GPf~~~~~~v~~Aci~~g~hYvDisg----e~~~~~~~~~~~~~~A~~~gv~iv~~~G~  114 (138)
                      +|.++|.+  .+.|+|+-|++|.. + ...+..|+++|.|.+=.+-    +....++    +-+.|+++|..+....|+
T Consensus        28 ~d~~eLl~--~~vDaVviatp~~~-H-~e~a~~aL~aGkhVl~~s~gAlad~e~~~~----l~~aA~~~g~~l~i~sGa   98 (229)
T TIGR03855        28 SDFDEFLP--EDVDIVVEAASQEA-V-KEYAEKILKNGKDLLIMSVGALADRELRER----LREVARSSGRKVYIPSGA   98 (229)
T ss_pred             CCHHHHhc--CCCCEEEECCChHH-H-HHHHHHHHHCCCCEEEECCcccCCHHHHHH----HHHHHHhcCCEEEEChHH
Confidence            35444432  57999999996654 4 4789999999999987654    4445444    447899999999998775

Members of this protein family are L-aspartate dehydrogenase, as shown for the NADP-dependent enzyme TM_1643 of Thermotoga maritima. Members lack homology to NadB, the aspartate oxidase (EC 1.4.3.16) of most mesophilic bacteria (described by TIGR00551), which this enzyme replaces in the generation of oxaloacetate from aspartate for the NAD biosynthetic pathway. All members of the seed alignment are found adjacent to other genes of NAD biosynthesis, although other uses of L-aspartate dehydrogenase may occur.

>TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase

Probab=94.92  E-value=0.078  Score=41.68  Aligned_cols=52  Identities=4%  Similarity=-0.080  Sum_probs=40.3

Q ss_pred             CcceEEeeCCCHHHHHHHHhc--CcEEEecCCCccch----------------hHHHHHHHHHc--CCCeee
Q psy12849         31 TNRTTVVNTINESSILIMAKK--CRVILNCVGPYTWY----------------GEAVVKACIEA--KTHHVD   82 (138)
Q Consensus        31 ~~~~~~~D~~d~~~L~~~~~~--~dvVIn~~GPf~~~----------------~~~v~~Aci~~--g~hYvD   82 (138)
                      +++++.+|+.|++++.+++++  +|+||||+|+....                ...++++|.+.  +..+|=
T Consensus        51 ~~~~~~~Dl~~~~~~~~~~~~~~~d~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~i~  122 (317)
T TIGR01181        51 RYRFVKGDIGDRELVSRLFTEHQPDAVVHFAAESHVDRSISGPAAFIETNVVGTYTLLEAVRKYWHEFRFHH  122 (317)
T ss_pred             CcEEEEcCCcCHHHHHHHHhhcCCCEEEEcccccCchhhhhCHHHHHHHHHHHHHHHHHHHHhcCCCceEEE
Confidence            578899999999999999998  89999999975421                13578889885  334543

This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor.

>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit

Probab=94.45  E-value=0.054  Score=44.15  Aligned_cols=63  Identities=13%  Similarity=0.213  Sum_probs=46.8

Q ss_pred             HHHHHHHhcCcEEEecCCCccchhHHHHHHHHHcCCCeeeCCCChHHHHHHHHHhHHHHHhCCCEEEeCCC
Q psy12849         43 SSILIMAKKCRVILNCVGPYTWYGEAVVKACIEAKTHHVDITGEPYFMEYMQYEYNTRAQESEVCVVSACG  113 (138)
Q Consensus        43 ~~L~~~~~~~dvVIn~~GPf~~~~~~v~~Aci~~g~hYvDisge~~~~~~~~~~~~~~A~~~gv~iv~~~G  113 (138)
                      +++.+.++++|+|+||+ |........++ .++.++-.+|++..+.-+     .| +.|++.|+..+..-|
T Consensus       201 ~~l~~~l~~aDiVint~-P~~ii~~~~l~-~~k~~aliIDlas~Pg~t-----df-~~Ak~~G~~a~~~~g  263 (287)
T TIGR02853       201 NKLEEKVAEIDIVINTI-PALVLTADVLS-KLPKHAVIIDLASKPGGT-----DF-EYAKKRGIKALLAPG  263 (287)
T ss_pred             HHHHHHhccCCEEEECC-ChHHhCHHHHh-cCCCCeEEEEeCcCCCCC-----CH-HHHHHCCCEEEEeCC
Confidence            45778889999999999 76654444443 457789999998876443     34 568999999997666

This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.

>PLN02427 UDP-apiose/xylose synthase

Probab=94.33  E-value=0.096  Score=43.41  Aligned_cols=55  Identities=18%  Similarity=0.220  Sum_probs=41.7

Q ss_pred             CCcceEEeeCCCHHHHHHHHhcCcEEEecCCCcc---ch-------------hHHHHHHHHHcCCCeeeCC
Q psy12849         30 RTNRTTVVNTINESSILIMAKKCRVILNCVGPYT---WY-------------GEAVVKACIEAKTHHVDIT   84 (138)
Q Consensus        30 ~~~~~~~~D~~d~~~L~~~~~~~dvVIn~~GPf~---~~-------------~~~v~~Aci~~g~hYvDis   84 (138)
                      .+++++..|+.|.+.+.++++++|+||||++...   ..             ..+++++|.+.|...|=+|
T Consensus        65 ~~~~~~~~Dl~d~~~l~~~~~~~d~ViHlAa~~~~~~~~~~~~~~~~~n~~gt~~ll~aa~~~~~r~v~~S  135 (386)
T PLN02427         65 GRIQFHRINIKHDSRLEGLIKMADLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENNKRLIHFS  135 (386)
T ss_pred             CCeEEEEcCCCChHHHHHHhhcCCEEEEcccccChhhhhhChHHHHHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence            3688999999999999999999999999997321   00             2356788887776665443

>COG1091 RfbD dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane]

Probab=94.22  E-value=0.072  Score=43.74  Aligned_cols=47  Identities=21%  Similarity=0.396  Sum_probs=39.4

Q ss_pred             eeCCCHHHHHHHHhcC--cEEEecCCCccch-----------------hHHHHHHHHHcCCCeeeCC
Q psy12849         37 VNTINESSILIMAKKC--RVILNCVGPYTWY-----------------GEAVVKACIEAKTHHVDIT   84 (138)
Q Consensus        37 ~D~~d~~~L~~~~~~~--dvVIn~~GPf~~~-----------------~~~v~~Aci~~g~hYvDis   84 (138)
                      +|+.|++.+.+++++.  |+||||+ .|...                 ...++++|-+.|..+|=+|
T Consensus        34 ~Ditd~~~v~~~i~~~~PDvVIn~A-Ayt~vD~aE~~~e~A~~vNa~~~~~lA~aa~~~ga~lVhiS   99 (281)
T COG1091          34 LDITDPDAVLEVIRETRPDVVINAA-AYTAVDKAESEPELAFAVNATGAENLARAAAEVGARLVHIS   99 (281)
T ss_pred             ccccChHHHHHHHHhhCCCEEEECc-cccccccccCCHHHHHHhHHHHHHHHHHHHHHhCCeEEEee
Confidence            7999999999999975  9999999 66532                 2368999999998887766

>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed

Probab=94.12  E-value=0.033  Score=44.83  Aligned_cols=74  Identities=16%  Similarity=0.124  Sum_probs=51.2

Q ss_pred             HHHHhcCcEEEecCCCccchh----HHHHHHHHHcCCCeeeCCCChHHHHHHHHHhHHHHHhCCCEEEeCCCCccchHhH
Q psy12849         46 LIMAKKCRVILNCVGPYTWYG----EAVVKACIEAKTHHVDITGEPYFMEYMQYEYNTRAQESEVCVVSACGIETLPIDM  121 (138)
Q Consensus        46 ~~~~~~~dvVIn~~GPf~~~~----~~v~~Aci~~g~hYvDisge~~~~~~~~~~~~~~A~~~gv~iv~~~G~d~~p~dl  121 (138)
                      ...+.++|+||||. |-...+    .++...++..+...+|+...|.-+     .|-++|+++|..++.|.+       |
T Consensus       180 ~~~~~~~DivInaT-p~g~~~~~~~~~~~~~~l~~~~~v~DivY~P~~T-----~ll~~A~~~G~~~~~G~~-------M  246 (278)
T PRK00258        180 QEELADFDLIINAT-SAGMSGELPLPPLPLSLLRPGTIVYDMIYGPLPT-----PFLAWAKAQGARTIDGLG-------M  246 (278)
T ss_pred             hhccccCCEEEECC-cCCCCCCCCCCCCCHHHcCCCCEEEEeecCCCCC-----HHHHHHHHCcCeecCCHH-------H
Confidence            45667899999999 554332    245567888899999998865433     444679999999887655       4


Q ss_pred             HHHHHHHHhhh
Q psy12849        122 GVLMLQDSFEG  132 (138)
Q Consensus       122 ~~~~~~~~~~~  132 (138)
                      +.+.+..+|+-
T Consensus       247 l~~Qa~~~f~~  257 (278)
T PRK00258        247 LVHQAAEAFEL  257 (278)
T ss_pred             HHHHHHHHHHH
Confidence            55555555543

>TIGR03466 HpnA hopanoid-associated sugar epimerase

Probab=93.54  E-value=0.24  Score=39.24  Aligned_cols=48  Identities=15%  Similarity=0.289  Sum_probs=38.7

Q ss_pred             CcceEEeeCCCHHHHHHHHhcCcEEEecCCCccch--------------hHHHHHHHHHcCC
Q psy12849         31 TNRTTVVNTINESSILIMAKKCRVILNCVGPYTWY--------------GEAVVKACIEAKT   78 (138)
Q Consensus        31 ~~~~~~~D~~d~~~L~~~~~~~dvVIn~~GPf~~~--------------~~~v~~Aci~~g~   78 (138)
                      +++++..|+.|++++.++++++|+|||+++++...              ...++++|.+.++
T Consensus        44 ~~~~~~~D~~~~~~l~~~~~~~d~vi~~a~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~  105 (328)
T TIGR03466        44 DVEIVEGDLRDPASLRKAVAGCRALFHVAADYRLWAPDPEEMYAANVEGTRNLLRAALEAGV  105 (328)
T ss_pred             CceEEEeeCCCHHHHHHHHhCCCEEEEeceecccCCCCHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            57889999999999999999999999999764211              1456788888764

The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.

>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase

Probab=93.53  E-value=0.25  Score=40.21  Aligned_cols=54  Identities=9%  Similarity=0.089  Sum_probs=41.9

Q ss_pred             CCcceEEeeCCCHHHHHHHHhcCcEEEecCCCccc----------------hhHHHHHHHHHcCC-CeeeC
Q psy12849         30 RTNRTTVVNTINESSILIMAKKCRVILNCVGPYTW----------------YGEAVVKACIEAKT-HHVDI   83 (138)
Q Consensus        30 ~~~~~~~~D~~d~~~L~~~~~~~dvVIn~~GPf~~----------------~~~~v~~Aci~~g~-hYvDi   83 (138)
                      .++.++.+|+.|++++.++++++|+|||++|....                -...++++|.+.|+ +.|=+
T Consensus        53 ~~~~~v~~Dl~d~~~l~~~~~~iD~Vih~Ag~~~~~~~~~~~~~~~~~Nv~g~~~ll~aa~~~~~~~iV~~  123 (324)
T TIGR03589        53 PCLRFFIGDVRDKERLTRALRGVDYVVHAAALKQVPAAEYNPFECIRTNINGAQNVIDAAIDNGVKRVVAL  123 (324)
T ss_pred             CcEEEEEccCCCHHHHHHHHhcCCEEEECcccCCCchhhcCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEE
Confidence            45788999999999999999999999999985321                12367888988875 44443

This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.

>KOG2865|consensus

Probab=93.52  E-value=0.14  Score=42.95  Aligned_cols=53  Identities=21%  Similarity=0.276  Sum_probs=44.2

Q ss_pred             CCcceEEeeCCCHHHHHHHHhcCcEEEecCCCcc------------chhHHHHHHHHHcCCC-eee
Q psy12849         30 RTNRTTVVNTINESSILIMAKKCRVILNCVGPYT------------WYGEAVVKACIEAKTH-HVD   82 (138)
Q Consensus        30 ~~~~~~~~D~~d~~~L~~~~~~~dvVIn~~GPf~------------~~~~~v~~Aci~~g~h-YvD   82 (138)
                      .++-+...|+.|+++|+++++.+.||||.+|--+            ...+++++.|-++|+- ||-
T Consensus       109 GQvl~~~fd~~DedSIr~vvk~sNVVINLIGrd~eTknf~f~Dvn~~~aerlAricke~GVerfIh  174 (391)
T KOG2865|consen  109 GQVLFMKFDLRDEDSIRAVVKHSNVVINLIGRDYETKNFSFEDVNVHIAERLARICKEAGVERFIH  174 (391)
T ss_pred             cceeeeccCCCCHHHHHHHHHhCcEEEEeeccccccCCcccccccchHHHHHHHHHHhhChhheee
Confidence            5778899999999999999999999999999522            2357899999999974 444

>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional

Probab=93.36  E-value=0.23  Score=44.61  Aligned_cols=53  Identities=17%  Similarity=0.192  Sum_probs=41.2

Q ss_pred             CcceEEeeCCCHHHHHHHHhcCcEEEecCCCccc--------------hhHHHHHHHHHcCC-CeeeC
Q psy12849         31 TNRTTVVNTINESSILIMAKKCRVILNCVGPYTW--------------YGEAVVKACIEAKT-HHVDI   83 (138)
Q Consensus        31 ~~~~~~~D~~d~~~L~~~~~~~dvVIn~~GPf~~--------------~~~~v~~Aci~~g~-hYvDi   83 (138)
                      ++.++.+|+.|.+++.+.+.++|+||||+|....              -...++++|.+.|+ ++|=+
T Consensus       139 ~v~iV~gDLtD~esI~~aLggiDiVVn~AG~~~~~v~d~~~~~~VN~~Gt~nLl~Aa~~agVgRIV~V  206 (576)
T PLN03209        139 KLEIVECDLEKPDQIGPALGNASVVICCIGASEKEVFDVTGPYRIDYLATKNLVDAATVAKVNHFILV  206 (576)
T ss_pred             ceEEEEecCCCHHHHHHHhcCCCEEEEccccccccccchhhHHHHHHHHHHHHHHHHHHhCCCEEEEE
Confidence            5789999999999999999999999999996421              12467788887774 44443

>PRK12549 shikimate 5-dehydrogenase; Reviewed

Probab=93.34  E-value=0.088  Score=42.78  Aligned_cols=77  Identities=17%  Similarity=0.125  Sum_probs=49.2

Q ss_pred             HHHHHhcCcEEEecC--CCccchhHHHHHHHHHcCCCeeeCCCChHHHHHHHHHhHHHHHhCCCEEEeCCCCccchHhHH
Q psy12849         45 ILIMAKKCRVILNCV--GPYTWYGEAVVKACIEAKTHHVDITGEPYFMEYMQYEYNTRAQESEVCVVSACGIETLPIDMG  122 (138)
Q Consensus        45 L~~~~~~~dvVIn~~--GPf~~~~~~v~~Aci~~g~hYvDisge~~~~~~~~~~~~~~A~~~gv~iv~~~G~d~~p~dl~  122 (138)
                      +.+.++++|+||||.  |.+.....++-...+..+.-.+|+...|.-+     .|-..|+++|..++.|.+       |+
T Consensus       186 ~~~~~~~aDiVInaTp~Gm~~~~~~~~~~~~l~~~~~v~DivY~P~~T-----~ll~~A~~~G~~~~~G~~-------ML  253 (284)
T PRK12549        186 LAAALAAADGLVHATPTGMAKHPGLPLPAELLRPGLWVADIVYFPLET-----ELLRAARALGCRTLDGGG-------MA  253 (284)
T ss_pred             hHhhhCCCCEEEECCcCCCCCCCCCCCCHHHcCCCcEEEEeeeCCCCC-----HHHHHHHHCCCeEecCHH-------HH
Confidence            455678899999994  4221111233334566777889998876443     333678999999988765       55


Q ss_pred             HHHHHHHhhhh
Q psy12849        123 VLMLQDSFEGH  133 (138)
Q Consensus       123 ~~~~~~~~~~~  133 (138)
                      .+.++.+|+-=
T Consensus       254 ~~Qa~~~f~~w  264 (284)
T PRK12549        254 VFQAVDAFELF  264 (284)
T ss_pred             HHHHHHHHHHh
Confidence            55555555543

>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family

Probab=93.27  E-value=0.2  Score=39.50  Aligned_cols=50  Identities=4%  Similarity=-0.089  Sum_probs=40.3

Q ss_pred             CCcceEEeeCCCHHHHHHHH------hc-CcEEEecCCCccc---hhHHHHHHHHHcCCC
Q psy12849         30 RTNRTTVVNTINESSILIMA------KK-CRVILNCVGPYTW---YGEAVVKACIEAKTH   79 (138)
Q Consensus        30 ~~~~~~~~D~~d~~~L~~~~------~~-~dvVIn~~GPf~~---~~~~v~~Aci~~g~h   79 (138)
                      ..++.+.+|..|+++|.+.+      ++ +|.|+.+.++...   ....++++|.++|+.
T Consensus        39 ~~~~~~~~d~~d~~~l~~a~~~~~~~~g~~d~v~~~~~~~~~~~~~~~~~i~aa~~~gv~   98 (285)
T TIGR03649        39 PNEKHVKFDWLDEDTWDNPFSSDDGMEPEISAVYLVAPPIPDLAPPMIKFIDFARSKGVR   98 (285)
T ss_pred             CCCccccccCCCHHHHHHHHhcccCcCCceeEEEEeCCCCCChhHHHHHHHHHHHHcCCC
Confidence            35667889999999999999      57 9999999976432   345789999999974

This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.

>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional

Probab=92.90  E-value=0.33  Score=39.78  Aligned_cols=49  Identities=8%  Similarity=-0.142  Sum_probs=40.0

Q ss_pred             CCcceEEeeCCCHHHHHHHHhcCcEEEecCCCccc----------------hhHHHHHHHHHcCC
Q psy12849         30 RTNRTTVVNTINESSILIMAKKCRVILNCVGPYTW----------------YGEAVVKACIEAKT   78 (138)
Q Consensus        30 ~~~~~~~~D~~d~~~L~~~~~~~dvVIn~~GPf~~----------------~~~~v~~Aci~~g~   78 (138)
                      .++.++..|+.|.+.+.++++++|+|||+++....                ...+++++|.+.|+
T Consensus        69 ~~~~~~~~Di~d~~~l~~~~~~~d~ViHlAa~~~~~~~~~~~~~~~~~Nv~gt~nll~~~~~~~~  133 (348)
T PRK15181         69 SRFIFIQGDIRKFTDCQKACKNVDYVLHQAALGSVPRSLKDPIATNSANIDGFLNMLTAARDAHV  133 (348)
T ss_pred             CceEEEEccCCCHHHHHHHhhCCCEEEECccccCchhhhhCHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            35778999999999999999999999999974221                01378999999987

>PLN02986 cinnamyl-alcohol dehydrogenase family protein

Probab=92.62  E-value=0.13  Score=41.38  Aligned_cols=33  Identities=15%  Similarity=0.268  Sum_probs=30.4

Q ss_pred             CCcceEEeeCCCHHHHHHHHhcCcEEEecCCCc
Q psy12849         30 RTNRTTVVNTINESSILIMAKKCRVILNCVGPY   62 (138)
Q Consensus        30 ~~~~~~~~D~~d~~~L~~~~~~~dvVIn~~GPf   62 (138)
                      .+++++..|+.|++++.++++++|+|||++||+
T Consensus        56 ~~~~~~~~Dl~~~~~~~~~~~~~d~vih~A~~~   88 (322)
T PLN02986         56 ERLKLFKADLLEESSFEQAIEGCDAVFHTASPV   88 (322)
T ss_pred             CceEEEecCCCCcchHHHHHhCCCEEEEeCCCc
Confidence            467889999999999999999999999999985

>TIGR00507 aroE shikimate 5-dehydrogenase

Probab=92.48  E-value=0.14  Score=40.87  Aligned_cols=70  Identities=17%  Similarity=0.138  Sum_probs=47.9

Q ss_pred             hcCcEEEecCCCccchh----HHHHHHHHHcCCCeeeCCCChHHHHHHHHHhHHHHHhCCCEEEeCCCCccchHhHHHHH
Q psy12849         50 KKCRVILNCVGPYTWYG----EAVVKACIEAKTHHVDITGEPYFMEYMQYEYNTRAQESEVCVVSACGIETLPIDMGVLM  125 (138)
Q Consensus        50 ~~~dvVIn~~GPf~~~~----~~v~~Aci~~g~hYvDisge~~~~~~~~~~~~~~A~~~gv~iv~~~G~d~~p~dl~~~~  125 (138)
                      .++|+||||+ |....+    .++....++.+...+|++..++-+     .+-++|+++|..++.|.+       |+.+.
T Consensus       177 ~~~DivInat-p~gm~~~~~~~~~~~~~l~~~~~v~D~~y~p~~T-----~ll~~A~~~G~~~vdG~~-------Ml~~Q  243 (270)
T TIGR00507       177 HRVDLIINAT-SAGMSGNIDEPPVPAEKLKEGMVVYDMVYNPGET-----PFLAEAKSLGTKTIDGLG-------MLVAQ  243 (270)
T ss_pred             cCccEEEECC-CCCCCCCCCCCCCCHHHcCCCCEEEEeccCCCCC-----HHHHHHHHCCCeeeCCHH-------HHHHH
Confidence            4789999999 543221    123345678899999998887654     345779999999987665       45555


Q ss_pred             HHHHhhh
Q psy12849        126 LQDSFEG  132 (138)
Q Consensus       126 ~~~~~~~  132 (138)
                      +..+|+=
T Consensus       244 a~~~f~~  250 (270)
T TIGR00507       244 AALAFEL  250 (270)
T ss_pred             HHHHHHH
Confidence            5555543

This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.

>COG2910 Putative NADH-flavin reductase [General function prediction only]

Probab=92.30  E-value=0.23  Score=38.99  Aligned_cols=43  Identities=9%  Similarity=0.079  Sum_probs=37.4

Q ss_pred             HHhhhhcCC-CCcceEEeeCCCHHHHHHHHhcCcEEEecCCCcc
Q psy12849         21 LQKASWFGV-RTNRTTVVNTINESSILIMAKKCRVILNCVGPYT   63 (138)
Q Consensus        21 ~~~a~~~~~-~~~~~~~~D~~d~~~L~~~~~~~dvVIn~~GPf~   63 (138)
                      .|.++++.. ..+.+++-|+.|.+++.+.+.++|+||++.|+..
T Consensus        31 vRn~~K~~~~~~~~i~q~Difd~~~~a~~l~g~DaVIsA~~~~~   74 (211)
T COG2910          31 VRNASKLAARQGVTILQKDIFDLTSLASDLAGHDAVISAFGAGA   74 (211)
T ss_pred             EeChHhccccccceeecccccChhhhHhhhcCCceEEEeccCCC
Confidence            456666665 7788999999999999999999999999999874

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=92.30  E-value=0.12  Score=42.29  Aligned_cols=63  Identities=16%  Similarity=0.218  Sum_probs=44.0

Q ss_pred             HHHHHHHhcCcEEEecCCCccchhHHHHHHHHHcCCCeeeCCCChHHHHHHHHHhHHHHHhCCCEEEeCCC
Q psy12849         43 SSILIMAKKCRVILNCVGPYTWYGEAVVKACIEAKTHHVDITGEPYFMEYMQYEYNTRAQESEVCVVSACG  113 (138)
Q Consensus        43 ~~L~~~~~~~dvVIn~~GPf~~~~~~v~~Aci~~g~hYvDisge~~~~~~~~~~~~~~A~~~gv~iv~~~G  113 (138)
                      +++.+.++++|+||||+++ ....+..+ ..++.|.-.+|++..+.-+     .+ +.+++.|++++..-|
T Consensus       202 ~~l~~~l~~aDiVI~t~p~-~~i~~~~l-~~~~~g~vIIDla~~pggt-----d~-~~a~~~Gv~~~~~~~  264 (296)
T PRK08306        202 SELAEEVGKIDIIFNTIPA-LVLTKEVL-SKMPPEALIIDLASKPGGT-----DF-EYAEKRGIKALLAPG  264 (296)
T ss_pred             HHHHHHhCCCCEEEECCCh-hhhhHHHH-HcCCCCcEEEEEccCCCCc-----Ce-eehhhCCeEEEEECC
Confidence            3577888999999999944 33333332 3356799999998876543     23 467889999985555

>TIGR01179 galE UDP-glucose-4-epimerase

Probab=92.23  E-value=0.41  Score=37.66  Aligned_cols=48  Identities=6%  Similarity=-0.035  Sum_probs=37.6

Q ss_pred             CcceEEeeCCCHHHHHHHHh--cCcEEEecCCCccch----------------hHHHHHHHHHcCC
Q psy12849         31 TNRTTVVNTINESSILIMAK--KCRVILNCVGPYTWY----------------GEAVVKACIEAKT   78 (138)
Q Consensus        31 ~~~~~~~D~~d~~~L~~~~~--~~dvVIn~~GPf~~~----------------~~~v~~Aci~~g~   78 (138)
                      ++.++.+|+.+++++.++++  +.|+||+|+|+....                ...++++|.+.|+
T Consensus        48 ~~~~~~~D~~~~~~~~~~~~~~~~d~vv~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~  113 (328)
T TIGR01179        48 RVTFVEGDLRDRELLDRLFEEHKIDAVIHFAGLIAVGESVQDPLKYYRNNVVNTLNLLEAMQQTGV  113 (328)
T ss_pred             ceEEEECCCCCHHHHHHHHHhCCCcEEEECccccCcchhhcCchhhhhhhHHHHHHHHHHHHhcCC
Confidence            46688999999999999997  689999999964211                2466788888774

This enzyme interconverts UDP-glucose and UDP-galactose. A set of related proteins, some of which are tentatively identified as UDP-glucose-4-epimerase in Thermotoga maritima, Bacillus halodurans, and several archaea, but deeply branched from this set and lacking experimental evidence, are excluded from this model and described separately.

>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins

Probab=91.96  E-value=0.93  Score=32.45  Aligned_cols=43  Identities=14%  Similarity=0.239  Sum_probs=35.3

Q ss_pred             HHHHHHHhcCcEEEecCCCccchhHHHHHHHHHcCCCeeeCCCC
Q psy12849         43 SSILIMAKKCRVILNCVGPYTWYGEAVVKACIEAKTHHVDITGE   86 (138)
Q Consensus        43 ~~L~~~~~~~dvVIn~~GPf~~~~~~v~~Aci~~g~hYvDisge   86 (138)
                      +....+++++|+||.|...+. .-..+.+.|.+.|++|++....
T Consensus        81 ~~~~~~~~~~diVi~~~d~~~-~~~~l~~~~~~~~i~~i~~~~~  123 (143)
T cd01483          81 DNLDDFLDGVDLVIDAIDNIA-VRRALNRACKELGIPVIDAGGL  123 (143)
T ss_pred             hhHHHHhcCCCEEEECCCCHH-HHHHHHHHHHHcCCCEEEEcCC
Confidence            345788999999999998754 3467899999999999998554

This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.

>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP

Probab=91.93  E-value=0.66  Score=33.03  Aligned_cols=51  Identities=16%  Similarity=0.251  Sum_probs=38.8

Q ss_pred             cceEEeeCCCHHHHHHHHhcCcEEEecCCCccchhHHHHHHHHHcCCCeeeCC
Q psy12849         32 NRTTVVNTINESSILIMAKKCRVILNCVGPYTWYGEAVVKACIEAKTHHVDIT   84 (138)
Q Consensus        32 ~~~~~~D~~d~~~L~~~~~~~dvVIn~~GPf~~~~~~v~~Aci~~g~hYvDis   84 (138)
                      +.....++ +++.+.++++++|+||+|.+++. .-..+.+.|.+.|.++|+..
T Consensus        74 v~~~~~~~-~~~~~~~~~~~~d~vi~~~d~~~-~~~~l~~~~~~~~~p~i~~~  124 (135)
T PF00899_consen   74 VEAIPEKI-DEENIEELLKDYDIVIDCVDSLA-ARLLLNEICREYGIPFIDAG  124 (135)
T ss_dssp             EEEEESHC-SHHHHHHHHHTSSEEEEESSSHH-HHHHHHHHHHHTT-EEEEEE
T ss_pred             eeeeeccc-ccccccccccCCCEEEEecCCHH-HHHHHHHHHHHcCCCEEEEE
Confidence            44444444 56788999999999999998754 33578889999999999874

Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....

>PLN02695 GDP-D-mannose-3',5'-epimerase

Probab=91.92  E-value=0.37  Score=40.07  Aligned_cols=50  Identities=10%  Similarity=0.013  Sum_probs=39.3

Q ss_pred             cceEEeeCCCHHHHHHHHhcCcEEEecCCCccc-----------------hhHHHHHHHHHcCC-Cee
Q psy12849         32 NRTTVVNTINESSILIMAKKCRVILNCVGPYTW-----------------YGEAVVKACIEAKT-HHV   81 (138)
Q Consensus        32 ~~~~~~D~~d~~~L~~~~~~~dvVIn~~GPf~~-----------------~~~~v~~Aci~~g~-hYv   81 (138)
                      .+++..|+.|.+.+.++++++|+||||++++..                 ....++++|.+.|+ .+|
T Consensus        66 ~~~~~~Dl~d~~~~~~~~~~~D~Vih~Aa~~~~~~~~~~~~~~~~~~N~~~t~nll~aa~~~~vk~~V  133 (370)
T PLN02695         66 HEFHLVDLRVMENCLKVTKGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMLEAARINGVKRFF  133 (370)
T ss_pred             ceEEECCCCCHHHHHHHHhCCCEEEEcccccCCccccccCchhhHHHHHHHHHHHHHHHHHhCCCEEE
Confidence            467888999999999999999999999976420                 12468899999886 443

>PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional

Probab=91.77  E-value=0.46  Score=38.12  Aligned_cols=50  Identities=22%  Similarity=0.116  Sum_probs=38.1

Q ss_pred             eEEeeCCCHHHHHHHHhc--CcEEEecCCCccch----------------hHHHHHHHHHcCCCeeeC
Q psy12849         34 TTVVNTINESSILIMAKK--CRVILNCVGPYTWY----------------GEAVVKACIEAKTHHVDI   83 (138)
Q Consensus        34 ~~~~D~~d~~~L~~~~~~--~dvVIn~~GPf~~~----------------~~~v~~Aci~~g~hYvDi   83 (138)
                      .+..|+.|.+.+.+++++  .|+||||++.....                ...++++|.+.|+.+|=+
T Consensus        35 ~~~~Dl~d~~~~~~~~~~~~~D~Vih~Aa~~~~~~~~~~~~~~~~~N~~~~~~l~~aa~~~g~~~v~~  102 (299)
T PRK09987         35 DYCGDFSNPEGVAETVRKIRPDVIVNAAAHTAVDKAESEPEFAQLLNATSVEAIAKAANEVGAWVVHY  102 (299)
T ss_pred             cccCCCCCHHHHHHHHHhcCCCEEEECCccCCcchhhcCHHHHHHHHHHHHHHHHHHHHHcCCeEEEE
Confidence            345699999999999994  79999999864311                135889999988777643

>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]

Probab=91.57  E-value=0.12  Score=36.83  Aligned_cols=61  Identities=13%  Similarity=0.077  Sum_probs=39.8

Q ss_pred             HHHHHHHhcCcEEEecCCCccchhHHHHHHHHHcCCCeee-CCCChHHHHHHHHHhHHHHHhCCCEEEe
Q psy12849         43 SSILIMAKKCRVILNCVGPYTWYGEAVVKACIEAKTHHVD-ITGEPYFMEYMQYEYNTRAQESEVCVVS  110 (138)
Q Consensus        43 ~~L~~~~~~~dvVIn~~GPf~~~~~~v~~Aci~~g~hYvD-isge~~~~~~~~~~~~~~A~~~gv~iv~  110 (138)
                      +++.++++.+|++|.+.-|...  ...++.|++.|++.|= .||-.+.-.   ..+.+.+++  +.++.
T Consensus        59 ~~l~~~~~~~DVvIDfT~p~~~--~~~~~~~~~~g~~~ViGTTG~~~~~~---~~l~~~a~~--~~vl~  120 (124)
T PF01113_consen   59 DDLEELLEEADVVIDFTNPDAV--YDNLEYALKHGVPLVIGTTGFSDEQI---DELEELAKK--IPVLI  120 (124)
T ss_dssp             S-HHHHTTH-SEEEEES-HHHH--HHHHHHHHHHT-EEEEE-SSSHHHHH---HHHHHHTTT--SEEEE
T ss_pred             hhHHHhcccCCEEEEcCChHHh--HHHHHHHHhCCCCEEEECCCCCHHHH---HHHHHHhcc--CCEEE
Confidence            4688899999999999987544  5789999999999986 667654432   244454544  55544

In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....

>PLN02989 cinnamyl-alcohol dehydrogenase family protein

Probab=91.56  E-value=0.21  Score=40.04  Aligned_cols=33  Identities=12%  Similarity=0.310  Sum_probs=29.9

Q ss_pred             CCcceEEeeCCCHHHHHHHHhcCcEEEecCCCc
Q psy12849         30 RTNRTTVVNTINESSILIMAKKCRVILNCVGPY   62 (138)
Q Consensus        30 ~~~~~~~~D~~d~~~L~~~~~~~dvVIn~~GPf   62 (138)
                      .++.++..|+.|++++.++++++|+|||++|+.
T Consensus        56 ~~~~~~~~D~~d~~~~~~~~~~~d~vih~A~~~   88 (325)
T PLN02989         56 ERLKLFKADLLDEGSFELAIDGCETVFHTASPV   88 (325)
T ss_pred             CceEEEeCCCCCchHHHHHHcCCCEEEEeCCCC
Confidence            467889999999999999999999999999974

>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase

Probab=91.53  E-value=0.42  Score=37.40  Aligned_cols=48  Identities=8%  Similarity=0.106  Sum_probs=36.7

Q ss_pred             EeeCCCHHHHHHHHhcC--cEEEecCCCccc----------------hhHHHHHHHHHcCCCeeeC
Q psy12849         36 VVNTINESSILIMAKKC--RVILNCVGPYTW----------------YGEAVVKACIEAKTHHVDI   83 (138)
Q Consensus        36 ~~D~~d~~~L~~~~~~~--dvVIn~~GPf~~----------------~~~~v~~Aci~~g~hYvDi   83 (138)
                      ..|+.|++++.++++++  |+||||+|+...                ....++++|.+.|.++|=+
T Consensus        33 ~~d~~~~~~~~~~~~~~~~d~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~v~~   98 (287)
T TIGR01214        33 QLDLTDPEALERLLRAIRPDAVVNTAAYTDVDGAESDPEKAFAVNALAPQNLARAAARHGARLVHI   98 (287)
T ss_pred             ccCCCCHHHHHHHHHhCCCCEEEECCccccccccccCHHHHHHHHHHHHHHHHHHHHHcCCeEEEE
Confidence            57999999999999987  999999987421                1346777888877666543

This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc.

>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional

Probab=91.52  E-value=0.51  Score=38.36  Aligned_cols=52  Identities=25%  Similarity=0.179  Sum_probs=40.6

Q ss_pred             CCcceEEeeCC-CHHHHHHHHhcCcEEEecCCCccc---------------h-hHHHHHHHHHcCCCee
Q psy12849         30 RTNRTTVVNTI-NESSILIMAKKCRVILNCVGPYTW---------------Y-GEAVVKACIEAKTHHV   81 (138)
Q Consensus        30 ~~~~~~~~D~~-d~~~L~~~~~~~dvVIn~~GPf~~---------------~-~~~v~~Aci~~g~hYv   81 (138)
                      .+++++..|+. +.+.+.++++++|+||+|++....               . ...++++|.+.|.++|
T Consensus        46 ~~~~~~~~Dl~~~~~~~~~~~~~~d~ViH~aa~~~~~~~~~~p~~~~~~n~~~~~~ll~aa~~~~~~~v  114 (347)
T PRK11908         46 PRMHFFEGDITINKEWIEYHVKKCDVILPLVAIATPATYVKQPLRVFELDFEANLPIVRSAVKYGKHLV  114 (347)
T ss_pred             CCeEEEeCCCCCCHHHHHHHHcCCCEEEECcccCChHHhhcCcHHHHHHHHHHHHHHHHHHHhcCCeEE
Confidence            46889999997 778899999999999999873211               0 1367999999887766

>PLN02662 cinnamyl-alcohol dehydrogenase family protein

Probab=91.40  E-value=0.2  Score=39.94  Aligned_cols=49  Identities=14%  Similarity=0.276  Sum_probs=38.6

Q ss_pred             CCcceEEeeCCCHHHHHHHHhcCcEEEecCCCccch---------------hHHHHHHHHHc-CC
Q psy12849         30 RTNRTTVVNTINESSILIMAKKCRVILNCVGPYTWY---------------GEAVVKACIEA-KT   78 (138)
Q Consensus        30 ~~~~~~~~D~~d~~~L~~~~~~~dvVIn~~GPf~~~---------------~~~v~~Aci~~-g~   78 (138)
                      .+++++..|+.|++++.++++++|.|||++||+...               ...++++|.+. ++
T Consensus        55 ~~~~~~~~Dl~~~~~~~~~~~~~d~Vih~A~~~~~~~~~~~~~~~~~nv~gt~~ll~a~~~~~~~  119 (322)
T PLN02662         55 ERLHLFKANLLEEGSFDSVVDGCEGVFHTASPFYHDVTDPQAELIDPAVKGTLNVLRSCAKVPSV  119 (322)
T ss_pred             CceEEEeccccCcchHHHHHcCCCEEEEeCCcccCCCCChHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence            367889999999999999999999999999985321               12467778776 54

>PF01370 Epimerase: NAD dependent epimerase/dehydratase family; InterPro: IPR001509 This family of proteins utilise NAD as a cofactor

Probab=91.37  E-value=0.39  Score=36.07  Aligned_cols=48  Identities=10%  Similarity=0.088  Sum_probs=39.9

Q ss_pred             CcceEEeeCCCHHHHHHHHhcC--cEEEecCCCcc----------------chhHHHHHHHHHcCC
Q psy12849         31 TNRTTVVNTINESSILIMAKKC--RVILNCVGPYT----------------WYGEAVVKACIEAKT   78 (138)
Q Consensus        31 ~~~~~~~D~~d~~~L~~~~~~~--dvVIn~~GPf~----------------~~~~~v~~Aci~~g~   78 (138)
                      ++++...|+.|.+.+.+++++.  |+|++++|+..                .....++++|.+.|+
T Consensus        43 ~~~~~~~dl~~~~~~~~~~~~~~~d~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~  108 (236)
T PF01370_consen   43 NVEFVIGDLTDKEQLEKLLEKANIDVVIHLAAFSSNPESFEDPEEIIEANVQGTRNLLEAAREAGV  108 (236)
T ss_dssp             TEEEEESETTSHHHHHHHHHHHTESEEEEEBSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             eEEEEEeeccccccccccccccCceEEEEeeccccccccccccccccccccccccccccccccccc
Confidence            6789999999999999999998  99999999852                112367788888887

The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions []. It contains the NAD(P)- binding domain (IPR016040 from INTERPRO) which is a commonly found domain with a core Rossmann-type fold. One of the best studied of these proteins is UDP-galactose 4-epimerase which catalyses the conversion of UDP-galactose to UDP-glucose during galactose metabolism [, ].; GO: 0003824 catalytic activity, 0050662 coenzyme binding, 0044237 cellular metabolic process; PDB: 2NNL_D 3C1T_B 3BXX_C 2IOD_C 2X4G_A 2Q1W_B 3SLG_B 1R66_A 1R6D_A 1KEU_B ....

>PRK06182 short chain dehydrogenase; Validated

Probab=91.07  E-value=0.39  Score=37.50  Aligned_cols=33  Identities=18%  Similarity=0.177  Sum_probs=28.7

Q ss_pred             CCcceEEeeCCCHHHHHHHHh-------cCcEEEecCCCc
Q psy12849         30 RTNRTTVVNTINESSILIMAK-------KCRVILNCVGPY   62 (138)
Q Consensus        30 ~~~~~~~~D~~d~~~L~~~~~-------~~dvVIn~~GPf   62 (138)
                      .++.++++|+.|++++.++++       +.|++||++|+.
T Consensus        46 ~~~~~~~~Dv~~~~~~~~~~~~~~~~~~~id~li~~ag~~   85 (273)
T PRK06182         46 LGVHPLSLDVTDEASIKAAVDTIIAEEGRIDVLVNNAGYG   85 (273)
T ss_pred             CCCeEEEeeCCCHHHHHHHHHHHHHhcCCCCEEEECCCcC
Confidence            357889999999999999887       679999999864

>PRK06179 short chain dehydrogenase; Provisional

Probab=91.07  E-value=0.29  Score=38.03  Aligned_cols=33  Identities=12%  Similarity=0.150  Sum_probs=29.2

Q ss_pred             CCcceEEeeCCCHHHHHHHHhc-------CcEEEecCCCc
Q psy12849         30 RTNRTTVVNTINESSILIMAKK-------CRVILNCVGPY   62 (138)
Q Consensus        30 ~~~~~~~~D~~d~~~L~~~~~~-------~dvVIn~~GPf   62 (138)
                      .++.++++|+.|++++.+++++       .|++|||+|+.
T Consensus        45 ~~~~~~~~D~~d~~~~~~~~~~~~~~~g~~d~li~~ag~~   84 (270)
T PRK06179         45 PGVELLELDVTDDASVQAAVDEVIARAGRIDVLVNNAGVG   84 (270)
T ss_pred             CCCeeEEeecCCHHHHHHHHHHHHHhCCCCCEEEECCCCC
Confidence            4678999999999999999986       59999999975

>PRK14027 quinate/shikimate dehydrogenase; Provisional

Probab=91.07  E-value=0.38  Score=39.21  Aligned_cols=75  Identities=16%  Similarity=0.125  Sum_probs=48.1

Q ss_pred             HHHHHhcCcEEEecCCCccchh---HHHHHHHHHcCCCeeeCCCChHHHHHHHHHhHHHHHhCCCEEEeCCCCccchHhH
Q psy12849         45 ILIMAKKCRVILNCVGPYTWYG---EAVVKACIEAKTHHVDITGEPYFMEYMQYEYNTRAQESEVCVVSACGIETLPIDM  121 (138)
Q Consensus        45 L~~~~~~~dvVIn~~GPf~~~~---~~v~~Aci~~g~hYvDisge~~~~~~~~~~~~~~A~~~gv~iv~~~G~d~~p~dl  121 (138)
                      +...+.++|+||||. |-.-.+   .++-...+..+.-.+|+...|.-+     .|-..|+++|..++.|.+       |
T Consensus       188 ~~~~~~~~divINaT-p~Gm~~~~~~~~~~~~l~~~~~v~D~vY~P~~T-----~ll~~A~~~G~~~~~Gl~-------M  254 (283)
T PRK14027        188 IEDVIAAADGVVNAT-PMGMPAHPGTAFDVSCLTKDHWVGDVVYMPIET-----ELLKAARALGCETLDGTR-------M  254 (283)
T ss_pred             HHHHHhhcCEEEEcC-CCCCCCCCCCCCCHHHcCCCcEEEEcccCCCCC-----HHHHHHHHCCCEEEccHH-------H
Confidence            444567899999998 543221   133334566677789998876443     333578899999988766       4


Q ss_pred             HHHHHHHHhhh
Q psy12849        122 GVLMLQDSFEG  132 (138)
Q Consensus       122 ~~~~~~~~~~~  132 (138)
                      +.+.++.+|+-
T Consensus       255 Lv~Qa~~~f~l  265 (283)
T PRK14027        255 AIHQAVDAFRL  265 (283)
T ss_pred             HHHHHHHHHHH
Confidence            45555555443

>PRK13301 putative L-aspartate dehydrogenase; Provisional

Probab=90.99  E-value=1.7  Score=35.55  Aligned_cols=63  Identities=11%  Similarity=0.175  Sum_probs=48.8

Q ss_pred             HHHH-HhcCcEEEecCCCccchhHHHHHHHHHcCCCeeeCC-C---ChHHHHHHHHHhHHHHHhCCCEEEeCCC
Q psy12849         45 ILIM-AKKCRVILNCVGPYTWYGEAVVKACIEAKTHHVDIT-G---EPYFMEYMQYEYNTRAQESEVCVVSACG  113 (138)
Q Consensus        45 L~~~-~~~~dvVIn~~GPf~~~~~~v~~Aci~~g~hYvDis-g---e~~~~~~~~~~~~~~A~~~gv~iv~~~G  113 (138)
                      +.++ ....|+||.|+||-..  ....+.+++.|+|.+=+| |   |..+.    .++.+.|++.|-.+..-.|
T Consensus        55 l~~ll~~~~DlVVE~A~~~av--~e~~~~iL~~g~dlvv~SvGALaD~~~~----~~l~~~A~~~g~~i~ipSG  122 (267)
T PRK13301         55 LPGLLAWRPDLVVEAAGQQAI--AEHAEGCLTAGLDMIICSAGALADDALR----ARLIAAAEAGGARIRVPAG  122 (267)
T ss_pred             HHHHhhcCCCEEEECCCHHHH--HHHHHHHHhcCCCEEEEChhHhcCHHHH----HHHHHHHHhCCCEEEEeCh
Confidence            5665 4679999999998554  567899999999999876 3   44444    4556889999988888888

>PLN00198 anthocyanidin reductase; Provisional

Probab=90.85  E-value=0.3  Score=39.51  Aligned_cols=32  Identities=13%  Similarity=0.207  Sum_probs=29.3

Q ss_pred             CcceEEeeCCCHHHHHHHHhcCcEEEecCCCc
Q psy12849         31 TNRTTVVNTINESSILIMAKKCRVILNCVGPY   62 (138)
Q Consensus        31 ~~~~~~~D~~d~~~L~~~~~~~dvVIn~~GPf   62 (138)
                      +++++..|+.|++++.++++++|.|||++||.
T Consensus        60 ~~~~~~~Dl~d~~~~~~~~~~~d~vih~A~~~   91 (338)
T PLN00198         60 DLKIFGADLTDEESFEAPIAGCDLVFHVATPV   91 (338)
T ss_pred             ceEEEEcCCCChHHHHHHHhcCCEEEEeCCCC
Confidence            57888999999999999999999999999964

>PRK12749 quinate/shikimate dehydrogenase; Reviewed

Probab=90.83  E-value=0.91  Score=37.04  Aligned_cols=77  Identities=12%  Similarity=0.058  Sum_probs=49.7

Q ss_pred             HHHHHHHhcCcEEEecCCCccchh---H-HH-HHHHHHcCCCeeeCCCChHHHHHHHHHhHHHHHhCCCEEEeCCCCccc
Q psy12849         43 SSILIMAKKCRVILNCVGPYTWYG---E-AV-VKACIEAKTHHVDITGEPYFMEYMQYEYNTRAQESEVCVVSACGIETL  117 (138)
Q Consensus        43 ~~L~~~~~~~dvVIn~~GPf~~~~---~-~v-~~Aci~~g~hYvDisge~~~~~~~~~~~~~~A~~~gv~iv~~~G~d~~  117 (138)
                      +.+...+.++|+||||. |-.-.+   . ++ -...+..+...+|+...|.-+     .|-.+|+++|...++|.+    
T Consensus       188 ~~l~~~~~~aDivINaT-p~Gm~~~~~~~~~~~~~~l~~~~~v~D~vY~P~~T-----~ll~~A~~~G~~~~~Gl~----  257 (288)
T PRK12749        188 QAFAEALASADILTNGT-KVGMKPLENESLVNDISLLHPGLLVTECVYNPHMT-----KLLQQAQQAGCKTIDGYG----  257 (288)
T ss_pred             hhhhhhcccCCEEEECC-CCCCCCCCCCCCCCcHHHCCCCCEEEEecCCCccC-----HHHHHHHHCCCeEECCHH----
Confidence            34556677899999999 543221   1 11 123456677788998876543     444678999999988765    


Q ss_pred             hHhHHHHHHHHHhhh
Q psy12849        118 PIDMGVLMLQDSFEG  132 (138)
Q Consensus       118 p~dl~~~~~~~~~~~  132 (138)
                         |+.+.+..+|+-
T Consensus       258 ---ML~~Qa~~~f~l  269 (288)
T PRK12749        258 ---MLLWQGAEQFTL  269 (288)
T ss_pred             ---HHHHHHHHHHHH
Confidence               455555555553

>PLN02240 UDP-glucose 4-epimerase

Probab=90.74  E-value=0.73  Score=37.21  Aligned_cols=53  Identities=6%  Similarity=-0.034  Sum_probs=39.8

Q ss_pred             CCcceEEeeCCCHHHHHHHHh--cCcEEEecCCCccc----------------hhHHHHHHHHHcCC-Ceee
Q psy12849         30 RTNRTTVVNTINESSILIMAK--KCRVILNCVGPYTW----------------YGEAVVKACIEAKT-HHVD   82 (138)
Q Consensus        30 ~~~~~~~~D~~d~~~L~~~~~--~~dvVIn~~GPf~~----------------~~~~v~~Aci~~g~-hYvD   82 (138)
                      .++.++.+|+.|++++.++++  ++|.||||+|....                ....++++|.+.|+ ++|=
T Consensus        58 ~~~~~~~~D~~~~~~l~~~~~~~~~d~vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~  129 (352)
T PLN02240         58 DNLVFHKVDLRDKEALEKVFASTRFDAVIHFAGLKAVGESVAKPLLYYDNNLVGTINLLEVMAKHGCKKLVF  129 (352)
T ss_pred             ccceEEecCcCCHHHHHHHHHhCCCCEEEEccccCCccccccCHHHHHHHHHHHHHHHHHHHHHcCCCEEEE
Confidence            357889999999999999987  58999999984321                12367889988875 4443

>PRK06270 homoserine dehydrogenase; Provisional

Probab=90.42  E-value=1.8  Score=36.01  Aligned_cols=66  Identities=14%  Similarity=0.041  Sum_probs=47.0

Q ss_pred             HHHHHHh--cCcEEEecCCCccc---hhHHHHHHHHHcCCCeeeCCCChHHHHHHHHHhHHHHHhCCCEEEeC
Q psy12849         44 SILIMAK--KCRVILNCVGPYTW---YGEAVVKACIEAKTHHVDITGEPYFMEYMQYEYNTRAQESEVCVVSA  111 (138)
Q Consensus        44 ~L~~~~~--~~dvVIn~~GPf~~---~~~~v~~Aci~~g~hYvDisge~~~~~~~~~~~~~~A~~~gv~iv~~  111 (138)
                      ++.+++.  ..|+||.|.+|...   .+...++.|+++|+|.|-.+ ..+....+ .++.+.|+++|+.+...
T Consensus        80 d~~ell~~~~~DvVvd~T~s~~~~~~~a~~~~~~aL~~GkhVVtaN-K~pla~~~-~eL~~~A~~~g~~~~~e  150 (341)
T PRK06270         80 SGLEVIRSVDADVVVEATPTNIETGEPALSHCRKALERGKHVVTSN-KGPLALAY-KELKELAKKNGVRFRYE  150 (341)
T ss_pred             CHHHHhhccCCCEEEECCcCcccccchHHHHHHHHHHCCCEEEcCC-cHHHHhhH-HHHHHHHHHcCCEEEEe
Confidence            3445553  58999999976432   23578899999999999764 33443343 47778899999988754

>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase

Probab=90.39  E-value=0.41  Score=36.12  Aligned_cols=62  Identities=10%  Similarity=-0.069  Sum_probs=44.1

Q ss_pred             CcceEEeeCCCHHHHHHHHhcCcEEEecCCCccchhHHHHHHHHHcCCCeeeCCCChHHHHHH
Q psy12849         31 TNRTTVVNTINESSILIMAKKCRVILNCVGPYTWYGEAVVKACIEAKTHHVDITGEPYFMEYM   93 (138)
Q Consensus        31 ~~~~~~~D~~d~~~L~~~~~~~dvVIn~~GPf~~~~~~v~~Aci~~g~hYvDisge~~~~~~~   93 (138)
                      ..+...+|..+.+++.+.++++|+||++. |.........+.+.+.+.-.+|+..-++....+
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~diVi~at-~~g~~~~~~~~~~~~~~~vv~D~~~~~~~~~~~  138 (194)
T cd01078          77 GEGVGAVETSDDAARAAAIKGADVVFAAG-AAGVELLEKLAWAPKPLAVAADVNAVPPVGIEG  138 (194)
T ss_pred             CCcEEEeeCCCHHHHHHHHhcCCEEEECC-CCCceechhhhcccCceeEEEEccCCCCCCccc
Confidence            34566788899999999999999999987 665532233333444577899997776665443

Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo

>PRK08057 cobalt-precorrin-6x reductase; Reviewed

Probab=90.22  E-value=0.66  Score=37.24  Aligned_cols=52  Identities=10%  Similarity=0.149  Sum_probs=43.3

Q ss_pred             cceEEeeCCCHHHHHHHHh--cCcEEEecCCCccch-hHHHHHHHHHcCCCeeeC
Q psy12849         32 NRTTVVNTINESSILIMAK--KCRVILNCVGPYTWY-GEAVVKACIEAKTHHVDI   83 (138)
Q Consensus        32 ~~~~~~D~~d~~~L~~~~~--~~dvVIn~~GPf~~~-~~~v~~Aci~~g~hYvDi   83 (138)
                      .+++.--+.+.+++.++++  +.++||++.=||... ...+.++|-+.|.+|+=.
T Consensus        44 ~~v~~G~l~~~~~l~~~l~~~~i~~VIDATHPfA~~is~~a~~ac~~~~ipyiR~   98 (248)
T PRK08057         44 GPVRVGGFGGAEGLAAYLREEGIDLVIDATHPYAAQISANAAAACRALGIPYLRL   98 (248)
T ss_pred             ceEEECCCCCHHHHHHHHHHCCCCEEEECCCccHHHHHHHHHHHHHHhCCcEEEE
Confidence            3444444459999999999  579999999999855 689999999999999875

>PRK08374 homoserine dehydrogenase; Provisional

Probab=90.08  E-value=1.7  Score=36.19  Aligned_cols=73  Identities=5%  Similarity=-0.100  Sum_probs=50.5

Q ss_pred             HHHHH--hcCcEEEecCCCccchhHHHHHHHHHcCCCeeeCCCChHHHHHHHHHhHHHHHhCCCEEEeCCCCccchHhH
Q psy12849         45 ILIMA--KKCRVILNCVGPYTWYGEAVVKACIEAKTHHVDITGEPYFMEYMQYEYNTRAQESEVCVVSACGIETLPIDM  121 (138)
Q Consensus        45 L~~~~--~~~dvVIn~~GPf~~~~~~v~~Aci~~g~hYvDisge~~~~~~~~~~~~~~A~~~gv~iv~~~G~d~~p~dl  121 (138)
                      +.+++  ..+|+||+|.+|-  ....+.+.|++.|+|.|-.+=. +.... ..++.+.|+++|+.+....++..+..-+
T Consensus        83 ~~ell~~~~~DVvVd~t~~~--~a~~~~~~al~~G~~VVtanK~-~la~~-~~el~~la~~~~~~~~~ea~v~~GiPii  157 (336)
T PRK08374         83 PEEIVEEIDADIVVDVTNDK--NAHEWHLEALKEGKSVVTSNKP-PIAFH-YDELLDLANERNLPYLFEATVMAGTPII  157 (336)
T ss_pred             HHHHHhcCCCCEEEECCCcH--HHHHHHHHHHhhCCcEEECCHH-HHHhC-HHHHHHHHHHcCCeEEEeccccccCCch
Confidence            44555  3699999999763  4578999999999999976422 12222 2366678899999999776654343333

>KOG1205|consensus

Probab=89.97  E-value=0.72  Score=37.91  Aligned_cols=103  Identities=17%  Similarity=0.167  Sum_probs=60.8

Q ss_pred             CcceEEeeCCCHHHHHHHHh-------cCcEEEecCCCccchhHHHHHHHHHcCCCeee--CCCChHHHHHHHHHhHHHH
Q psy12849         31 TNRTTVVNTINESSILIMAK-------KCRVILNCVGPYTWYGEAVVKACIEAKTHHVD--ITGEPYFMEYMQYEYNTRA  101 (138)
Q Consensus        31 ~~~~~~~D~~d~~~L~~~~~-------~~dvVIn~~GPf~~~~~~v~~Aci~~g~hYvD--isge~~~~~~~~~~~~~~A  101 (138)
                      ++..+++|++|.+++.++++       +.|++||-||=.. . ...-..-++.=.+-+|  +-|....++.....+.+  
T Consensus        64 ~v~~~~~Dvs~~~~~~~~~~~~~~~fg~vDvLVNNAG~~~-~-~~~~~~~~~~~~~~mdtN~~G~V~~Tk~alp~m~~--  139 (282)
T KOG1205|consen   64 KVLVLQLDVSDEESVKKFVEWAIRHFGRVDVLVNNAGISL-V-GFLEDTDIEDVRNVMDTNVFGTVYLTKAALPSMKK--  139 (282)
T ss_pred             ccEEEeCccCCHHHHHHHHHHHHHhcCCCCEEEecCcccc-c-cccccCcHHHHHHHhhhhchhhHHHHHHHHHHhhh--
Confidence            59999999999999997763       5799999999544 2 2222222222122233  23444555554322221  


Q ss_pred             HhCCCEEEeC--CCCccchHh-HHH--HHHHHHhhhhcCCC
Q psy12849        102 QESEVCVVSA--CGIETLPID-MGV--LMLQDSFEGHSGKE  137 (138)
Q Consensus       102 ~~~gv~iv~~--~G~d~~p~d-l~~--~~~~~~~~~~~~~~  137 (138)
                      +..|-.++.+  +|+.+.|.. +..  .++...|.++|-.|
T Consensus       140 r~~GhIVvisSiaG~~~~P~~~~Y~ASK~Al~~f~etLR~E  180 (282)
T KOG1205|consen  140 RNDGHIVVISSIAGKMPLPFRSIYSASKHALEGFFETLRQE  180 (282)
T ss_pred             cCCCeEEEEeccccccCCCcccccchHHHHHHHHHHHHHHH
Confidence            1135544444  788888875 222  58888887776544

>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA

Probab=89.82  E-value=1.5  Score=34.17  Aligned_cols=50  Identities=10%  Similarity=0.151  Sum_probs=38.3

Q ss_pred             cceEEeeCCCHHHHHHHHhcCcEEEecCCCccchhHHHHHHHHHcCCCeeeC
Q psy12849         32 NRTTVVNTINESSILIMAKKCRVILNCVGPYTWYGEAVVKACIEAKTHHVDI   83 (138)
Q Consensus        32 ~~~~~~D~~d~~~L~~~~~~~dvVIn~~GPf~~~~~~v~~Aci~~g~hYvDi   83 (138)
                      ++.+...+ +++.+.++++++|+||+|.+.+. .-..+-+.|.+.|+++|+.
T Consensus        93 i~~~~~~i-~~~~~~~~~~~~DvVi~~~d~~~-~r~~l~~~~~~~~ip~i~~  142 (228)
T cd00757          93 IEAYNERL-DAENAEELIAGYDLVLDCTDNFA-TRYLINDACVKLGKPLVSG  142 (228)
T ss_pred             EEEeccee-CHHHHHHHHhCCCEEEEcCCCHH-HHHHHHHHHHHcCCCEEEE
Confidence            33333344 45678889999999999998654 3457889999999999995

Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).

>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]

Probab=89.65  E-value=1.2  Score=35.41  Aligned_cols=103  Identities=10%  Similarity=0.047  Sum_probs=63.1

Q ss_pred             HHHHHHHHHHHHHHHhhhhcCCCCcceEEeeCCC----------HHHHHHHHhcCcEEEecCCCccchhHHHHHHHHHcC
Q psy12849          8 QKLTADILKIFLFLQKASWFGVRTNRTTVVNTIN----------ESSILIMAKKCRVILNCVGPYTWYGEAVVKACIEAK   77 (138)
Q Consensus         8 ~~~~~d~~~~~~~~~~a~~~~~~~~~~~~~D~~d----------~~~L~~~~~~~dvVIn~~GPf~~~~~~v~~Aci~~g   77 (138)
                      |.|.+|-.++-..++.-.+   ...+++.+|+.|          +.-+.++-+..+..++|= ---...++.++.++++|
T Consensus         9 SILsaD~~~l~~el~~~~~---agad~iH~DVMDghFVPNiTfGp~~v~~l~~~t~~p~DvH-LMV~~p~~~i~~fa~ag   84 (220)
T COG0036           9 SILSADFARLGEELKALEA---AGADLIHIDVMDGHFVPNITFGPPVVKALRKITDLPLDVH-LMVENPDRYIEAFAKAG   84 (220)
T ss_pred             ehhhCCHhHHHHHHHHHHH---cCCCEEEEeccCCCcCCCcccCHHHHHHHhhcCCCceEEE-EecCCHHHHHHHHHHhC
Confidence            5677888777555554443   356899999998          455666655555555442 11112367899999999


Q ss_pred             CCeeeCCCCh-HHHHHHHHHhHHHHHhCCCEEEeCCCC
Q psy12849         78 THHVDITGEP-YFMEYMQYEYNTRAQESEVCVVSACGI  114 (138)
Q Consensus        78 ~hYvDisge~-~~~~~~~~~~~~~A~~~gv~iv~~~G~  114 (138)
                      ++||-+=-|. +-..+++....+.-.++|+.+-|++-+
T Consensus        85 ad~It~H~E~~~~~~r~i~~Ik~~G~kaGv~lnP~Tp~  122 (220)
T COG0036          85 ADIITFHAEATEHIHRTIQLIKELGVKAGLVLNPATPL  122 (220)
T ss_pred             CCEEEEEeccCcCHHHHHHHHHHcCCeEEEEECCCCCH
Confidence            9999986662 223333333334444556666665554

>PF07994 NAD_binding_5: Myo-inositol-1-phosphate synthase; InterPro: IPR002587 1L-myo-Inositol-1-phosphate synthase (5

Probab=89.60  E-value=0.76  Score=37.97  Aligned_cols=44  Identities=20%  Similarity=0.058  Sum_probs=30.1

Q ss_pred             HHHHHHHHcCCCeeeCCCChHHHHHHHHHhHHHHHhCCCEEEeCCCC
Q psy12849         68 AVVKACIEAKTHHVDITGEPYFMEYMQYEYNTRAQESEVCVVSACGI  114 (138)
Q Consensus        68 ~v~~Aci~~g~hYvDisge~~~~~~~~~~~~~~A~~~gv~iv~~~G~  114 (138)
                      -=+.||+++||.||..+-......   -.+.+.|+++|+.++---|=
T Consensus       191 ~YA~AAl~~g~~fvN~tP~~~a~~---P~l~ela~~~gvpi~GdD~K  234 (295)
T PF07994_consen  191 LYAYAALEAGVPFVNGTPSNIADD---PALVELAEEKGVPIAGDDGK  234 (295)
T ss_dssp             HHHHHHHHTTEEEEE-SSSTTTTS---HHHHHHHHHHTEEEEESSBS
T ss_pred             HHHHHHHHCCCCeEeccCccccCC---HHHHHHHHHcCCCeecchHh
Confidence            347899999999999765544311   13446788899998766554

5.1.4 from EC) catalyzes the conversion of D-glucose 6-phosphate to 1L-myo-inositol-1-phosphate, the first committed step in the production of all inositol-containing compounds, including phospholipids, either directly or by salvage. The enzyme exists in a cytoplasmic form in a wide range of plants, animals, and fungi. It has also been detected in several bacteria and a chloroplast form is observed in alga and higher plants. Inositol phosphates play an important role in signal transduction. In Saccharomyces cerevisiae (Baker's yeast), the transcriptional regulation of the INO1 gene has been studied in detail [] and its expression is sensitive to the availability of phospholipid precursors as well as growth phase. The regulation of the structural gene encoding 1L-myo-inositol-1-phosphate synthase has also been analyzed at the transcriptional level in the aquatic angiosperm, Spirodela polyrrhiza (Giant duckweed) and the halophyte, Mesembryanthemum crystallinum (Common ice plant) [].; GO: 0004512 inositol-3-phosphate synthase activity, 0006021 inositol biosynthetic process, 0008654 phospholipid biosynthetic process; PDB: 1GR0_A 1P1K_B 1LA2_B 1RM0_B 1P1I_B 1JKF_A 1P1F_A 1P1J_B 1JKI_B 1P1H_A ....

>PRK07326 short chain dehydrogenase; Provisional

Probab=89.60  E-value=0.58  Score=35.39  Aligned_cols=34  Identities=9%  Similarity=0.039  Sum_probs=29.6

Q ss_pred             CCcceEEeeCCCHHHHHHHHh-------cCcEEEecCCCcc
Q psy12849         30 RTNRTTVVNTINESSILIMAK-------KCRVILNCVGPYT   63 (138)
Q Consensus        30 ~~~~~~~~D~~d~~~L~~~~~-------~~dvVIn~~GPf~   63 (138)
                      .++.++++|+.|++++.++++       ++|+|||++|++.
T Consensus        54 ~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d~vi~~ag~~~   94 (237)
T PRK07326         54 GNVLGLAADVRDEADVQRAVDAIVAAFGGLDVLIANAGVGH   94 (237)
T ss_pred             CcEEEEEccCCCHHHHHHHHHHHHHHcCCCCEEEECCCCCC
Confidence            467889999999999998887       5899999999864

>TIGR03450 mycothiol_INO1 inositol 1-phosphate synthase, Actinobacterial type

Probab=89.49  E-value=1.2  Score=37.71  Aligned_cols=67  Identities=13%  Similarity=0.104  Sum_probs=46.3

Q ss_pred             HHHHHHHHhc--CcEEEecCCCccch--hHHHHHHHHHcCCCeeeCCCChHHHHHHHHHhHHHHHhCCCEEEeCC
Q psy12849         42 ESSILIMAKK--CRVILNCVGPYTWY--GEAVVKACIEAKTHHVDITGEPYFMEYMQYEYNTRAQESEVCVVSAC  112 (138)
Q Consensus        42 ~~~L~~~~~~--~dvVIn~~GPf~~~--~~~v~~Aci~~g~hYvDisge~~~~~~~~~~~~~~A~~~gv~iv~~~  112 (138)
                      ++.+.+.++.  .||+||-. |-...  .+-=+.||+++||.||..+-..-.  .. .++.++++++|+.++---
T Consensus       112 ~~dv~~~lk~~~~dVlvnyl-PvGs~~A~~~YA~AAl~aG~afVN~~P~~ia--~~-p~~a~~f~e~glPi~GDD  182 (351)
T TIGR03450       112 PVDVVQALKDAKVDVLVSYL-PVGSEEADKFYAQCAIDAGVAFVNALPVFIA--SD-PEWAKKFTDAGVPIVGDD  182 (351)
T ss_pred             HHHHHHHHHhcCCCEEEECC-ccchHHHHHHHHHHHHHcCCceEeccCcccc--CC-HHHHHHHHHCCCCEeccc
Confidence            3456666765  89999988 76543  334577999999999997553222  22 256677889999976543

This enzyme, inositol 1-phosphate synthase as found in Actinobacteria, produces an essential precursor for several different products, including mycothiol, which is a glutathione analog, and phosphatidylinositol, which is a phospholipid.

>PRK09186 flagellin modification protein A; Provisional

Probab=89.16  E-value=0.55  Score=35.96  Aligned_cols=32  Identities=16%  Similarity=0.182  Sum_probs=27.4

Q ss_pred             CcceEEeeCCCHHHHHHHHhc-------CcEEEecCCCc
Q psy12849         31 TNRTTVVNTINESSILIMAKK-------CRVILNCVGPY   62 (138)
Q Consensus        31 ~~~~~~~D~~d~~~L~~~~~~-------~dvVIn~~GPf   62 (138)
                      .+.++++|+.|++++.+++++       .|+|||++|+.
T Consensus        56 ~~~~~~~Dl~d~~~~~~~~~~~~~~~~~id~vi~~A~~~   94 (256)
T PRK09186         56 KLSLVELDITDQESLEEFLSKSAEKYGKIDGAVNCAYPR   94 (256)
T ss_pred             ceeEEEecCCCHHHHHHHHHHHHHHcCCccEEEECCccc
Confidence            456779999999999999886       69999999864

>PLN02725 GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductase

Probab=89.13  E-value=0.74  Score=36.21  Aligned_cols=47  Identities=6%  Similarity=0.034  Sum_probs=36.1

Q ss_pred             EEeeCCCHHHHHHHHhc--CcEEEecCCCccc-----------------hhHHHHHHHHHcCC-Cee
Q psy12849         35 TVVNTINESSILIMAKK--CRVILNCVGPYTW-----------------YGEAVVKACIEAKT-HHV   81 (138)
Q Consensus        35 ~~~D~~d~~~L~~~~~~--~dvVIn~~GPf~~-----------------~~~~v~~Aci~~g~-hYv   81 (138)
                      ...|+.|.+++.++++.  .|+||||++++..                 ....++++|.+.|+ ++|
T Consensus        31 ~~~Dl~~~~~l~~~~~~~~~d~Vih~A~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~i   97 (306)
T PLN02725         31 KELDLTRQADVEAFFAKEKPTYVILAAAKVGGIHANMTYPADFIRENLQIQTNVIDAAYRHGVKKLL   97 (306)
T ss_pred             ccCCCCCHHHHHHHHhccCCCEEEEeeeeecccchhhhCcHHHHHHHhHHHHHHHHHHHHcCCCeEE
Confidence            46899999999999885  5999999986421                 12358999999886 344

>TIGR01182 eda Entner-Doudoroff aldolase

Probab=89.08  E-value=2.1  Score=33.45  Aligned_cols=89  Identities=13%  Similarity=0.218  Sum_probs=59.3

Q ss_pred             hhhcCCCCcceEEeeCCCHHH---HHHHHhcC-cEEEecCCCccchhHHHHHHHHHcCCCeeeCCCChHHHHHHHHHhHH
Q psy12849         24 ASWFGVRTNRTTVVNTINESS---ILIMAKKC-RVILNCVGPYTWYGEAVVKACIEAKTHHVDITGEPYFMEYMQYEYNT   99 (138)
Q Consensus        24 a~~~~~~~~~~~~~D~~d~~~---L~~~~~~~-dvVIn~~GPf~~~~~~v~~Aci~~g~hYvDisge~~~~~~~~~~~~~   99 (138)
                      ++.+-...+..+.+..+.+..   +.++.+++ +++|-+ |  +.....-++.++++|.+|+=.-+   +..++.    +
T Consensus        26 ~~al~~~Gi~~iEit~~t~~a~~~i~~l~~~~~~~~vGA-G--TVl~~~~a~~a~~aGA~FivsP~---~~~~v~----~   95 (204)
T TIGR01182        26 AKALIEGGLRVLEVTLRTPVALDAIRLLRKEVPDALIGA-G--TVLNPEQLRQAVDAGAQFIVSPG---LTPELA----K   95 (204)
T ss_pred             HHHHHHcCCCEEEEeCCCccHHHHHHHHHHHCCCCEEEE-E--eCCCHHHHHHHHHcCCCEEECCC---CCHHHH----H
Confidence            444433567788888877655   44555554 455443 3  44456779999999999993322   233333    5


Q ss_pred             HHHhCCCEEEeCCCCccchHhHHHHH
Q psy12849        100 RAQESEVCVVSACGIETLPIDMGVLM  125 (138)
Q Consensus       100 ~A~~~gv~iv~~~G~d~~p~dl~~~~  125 (138)
                      .+++.|+..+|||-   .|+++...+
T Consensus        96 ~~~~~~i~~iPG~~---TptEi~~A~  118 (204)
T TIGR01182        96 HAQDHGIPIIPGVA---TPSEIMLAL  118 (204)
T ss_pred             HHHHcCCcEECCCC---CHHHHHHHH
Confidence            68899999999987   788887653

2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida

>PRK10217 dTDP-glucose 4,6-dehydratase; Provisional

Probab=88.99  E-value=0.5  Score=38.34  Aligned_cols=33  Identities=3%  Similarity=0.000  Sum_probs=29.1

Q ss_pred             CcceEEeeCCCHHHHHHHHhc--CcEEEecCCCcc
Q psy12849         31 TNRTTVVNTINESSILIMAKK--CRVILNCVGPYT   63 (138)
Q Consensus        31 ~~~~~~~D~~d~~~L~~~~~~--~dvVIn~~GPf~   63 (138)
                      +++++.+|+.|.+++.+++++  +|.||||+|+..
T Consensus        52 ~~~~~~~Dl~d~~~~~~~~~~~~~D~Vih~A~~~~   86 (355)
T PRK10217         52 RFAFEKVDICDRAELARVFTEHQPDCVMHLAAESH   86 (355)
T ss_pred             ceEEEECCCcChHHHHHHHhhcCCCEEEECCcccC
Confidence            567889999999999999995  899999999753

>PRK06349 homoserine dehydrogenase; Provisional

Probab=88.97  E-value=1.6  Score=37.47  Aligned_cols=64  Identities=14%  Similarity=0.132  Sum_probs=46.9

Q ss_pred             HHHHHh--cCcEEEecCCCccchhHHHHHHHHHcCCCeeeCCCChHHHHHHHHHhHHHHHhCCCEEEeC
Q psy12849         45 ILIMAK--KCRVILNCVGPYTWYGEAVVKACIEAKTHHVDITGEPYFMEYMQYEYNTRAQESEVCVVSA  111 (138)
Q Consensus        45 L~~~~~--~~dvVIn~~GPf~~~~~~v~~Aci~~g~hYvDisge~~~~~~~~~~~~~~A~~~gv~iv~~  111 (138)
                      +.+++.  ..|+|+.|.|+.. .....++.|+++|.|.|-..-  +.....-.++.+.|+++|+.+.-.
T Consensus        64 ~~~ll~d~~iDvVve~tg~~~-~~~~~~~~aL~~GkhVVtaNK--~~~a~~~~eL~~lA~~~gv~l~fE  129 (426)
T PRK06349         64 PEELVNDPDIDIVVELMGGIE-PARELILKALEAGKHVVTANK--ALLAVHGAELFAAAEEKGVDLYFE  129 (426)
T ss_pred             HHHHhhCCCCCEEEECCCCch-HHHHHHHHHHHCCCeEEEcCH--HHHHHHHHHHHHHHHHcCCcEEEE
Confidence            455665  4799999998754 446899999999999996543  333333357778899999987744

>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt

Probab=88.75  E-value=1.2  Score=35.66  Aligned_cols=51  Identities=12%  Similarity=0.215  Sum_probs=42.5

Q ss_pred             ceEEeeCCCHHHHHHHHh--cCcEEEecCCCccch-hHHHHHHHHHcCCCeeeC
Q psy12849         33 RTTVVNTINESSILIMAK--KCRVILNCVGPYTWY-GEAVVKACIEAKTHHVDI   83 (138)
Q Consensus        33 ~~~~~D~~d~~~L~~~~~--~~dvVIn~~GPf~~~-~~~v~~Aci~~g~hYvDi   83 (138)
                      +++.=-+.+.+.+.++|+  +.++||++.=||... ...+.++|-+.|.+|+=.
T Consensus        46 ~v~~G~lg~~~~l~~~l~~~~i~~vIDATHPfA~~is~na~~a~~~~~ipylR~   99 (249)
T PF02571_consen   46 EVRVGRLGDEEGLAEFLRENGIDAVIDATHPFAAEISQNAIEACRELGIPYLRF   99 (249)
T ss_pred             eEEECCCCCHHHHHHHHHhCCCcEEEECCCchHHHHHHHHHHHHhhcCcceEEE
Confidence            444444449999999997  589999999999855 689999999999999763

Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process

>PLN02686 cinnamoyl-CoA reductase

Probab=88.43  E-value=1.1  Score=37.12  Aligned_cols=46  Identities=20%  Similarity=0.251  Sum_probs=36.7

Q ss_pred             CcceEEeeCCCHHHHHHHHhcCcEEEecCCCccchh----------------HHHHHHHHHc
Q psy12849         31 TNRTTVVNTINESSILIMAKKCRVILNCVGPYTWYG----------------EAVVKACIEA   76 (138)
Q Consensus        31 ~~~~~~~D~~d~~~L~~~~~~~dvVIn~~GPf~~~~----------------~~v~~Aci~~   76 (138)
                      ++.++..|+.|++++.++++++|.|++++++....+                ..++++|.+.
T Consensus       108 ~~~~v~~Dl~d~~~l~~~i~~~d~V~hlA~~~~~~~~~~~~~~~~~~nv~gt~~llea~~~~  169 (367)
T PLN02686        108 GIWTVMANLTEPESLHEAFDGCAGVFHTSAFVDPAGLSGYTKSMAELEAKASENVIEACVRT  169 (367)
T ss_pred             ceEEEEcCCCCHHHHHHHHHhccEEEecCeeecccccccccchhhhhhHHHHHHHHHHHHhc
Confidence            467889999999999999999999999998642211                2478888775

>PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1

Probab=88.37  E-value=0.7  Score=37.15  Aligned_cols=49  Identities=14%  Similarity=0.268  Sum_probs=32.4

Q ss_pred             EeeCCCHHHHHHHHhc--CcEEEecCCCcc----------------chhHHHHHHHHHcCCCeeeCC
Q psy12849         36 VVNTINESSILIMAKK--CRVILNCVGPYT----------------WYGEAVVKACIEAKTHHVDIT   84 (138)
Q Consensus        36 ~~D~~d~~~L~~~~~~--~dvVIn~~GPf~----------------~~~~~v~~Aci~~g~hYvDis   84 (138)
                      .+|+.|.+++.+++++  .|+||||+|-..                .....++++|.+.|+++|=+|
T Consensus        34 ~~dl~d~~~~~~~~~~~~pd~Vin~aa~~~~~~ce~~p~~a~~iN~~~~~~la~~~~~~~~~li~~S  100 (286)
T PF04321_consen   34 DLDLTDPEAVAKLLEAFKPDVVINCAAYTNVDACEKNPEEAYAINVDATKNLAEACKERGARLIHIS  100 (286)
T ss_dssp             CS-TTSHHHHHHHHHHH--SEEEE------HHHHHHSHHHHHHHHTHHHHHHHHHHHHCT-EEEEEE
T ss_pred             hcCCCCHHHHHHHHHHhCCCeEeccceeecHHhhhhChhhhHHHhhHHHHHHHHHHHHcCCcEEEee
Confidence            7789999999999986  799999996321                112378999999999886543

1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process; PDB: 2YDX_D 2YDY_A 3SC6_C 1VL0_B 2GGS_A 1KBZ_A 1KC3_A 1KC1_A 1N2S_A.

>PLN02253 xanthoxin dehydrogenase

Probab=88.16  E-value=0.79  Score=35.84  Aligned_cols=32  Identities=9%  Similarity=0.038  Sum_probs=28.3

Q ss_pred             CCcceEEeeCCCHHHHHHHHh-------cCcEEEecCCC
Q psy12849         30 RTNRTTVVNTINESSILIMAK-------KCRVILNCVGP   61 (138)
Q Consensus        30 ~~~~~~~~D~~d~~~L~~~~~-------~~dvVIn~~GP   61 (138)
                      .++.++++|+.|++++.++++       +.|++||++|.
T Consensus        66 ~~~~~~~~Dl~d~~~~~~~~~~~~~~~g~id~li~~Ag~  104 (280)
T PLN02253         66 PNVCFFHCDVTVEDDVSRAVDFTVDKFGTLDIMVNNAGL  104 (280)
T ss_pred             CceEEEEeecCCHHHHHHHHHHHHHHhCCCCEEEECCCc
Confidence            467899999999999999888       57999999985

>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]

Probab=87.92  E-value=2.1  Score=34.62  Aligned_cols=64  Identities=11%  Similarity=0.100  Sum_probs=48.3

Q ss_pred             HHHHHHhcCcEEEecCCCccchhHHHHHHHHHcCCCeeeCCC----ChHHHHHHHHHhHHHHHhCCCEEEeCCC
Q psy12849         44 SILIMAKKCRVILNCVGPYTWYGEAVVKACIEAKTHHVDITG----EPYFMEYMQYEYNTRAQESEVCVVSACG  113 (138)
Q Consensus        44 ~L~~~~~~~dvVIn~~GPf~~~~~~v~~Aci~~g~hYvDisg----e~~~~~~~~~~~~~~A~~~gv~iv~~~G  113 (138)
                      +|.+++...|+++-|++|-.  -...+.-++++|+||+=+|=    |+.+    .+++.+.|+..|..+-.-.|
T Consensus        53 ~ide~~~~~DlvVEaAS~~A--v~e~~~~~L~~g~d~iV~SVGALad~~l----~erl~~lak~~~~rv~~pSG  120 (255)
T COG1712          53 DIDELIAEVDLVVEAASPEA--VREYVPKILKAGIDVIVMSVGALADEGL----RERLRELAKCGGARVYLPSG  120 (255)
T ss_pred             cHHHHhhccceeeeeCCHHH--HHHHhHHHHhcCCCEEEEechhccChHH----HHHHHHHHhcCCcEEEecCc
Confidence            36777899999999998743  35778889999999987532    4344    34566888888888877666

>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional

Probab=87.87  E-value=4.5  Score=31.68  Aligned_cols=89  Identities=10%  Similarity=0.025  Sum_probs=58.4

Q ss_pred             hhhcCCCCcceEEeeCCCHH---HHHHHHhcC----cEEEecCCCccchhHHHHHHHHHcCCCeeeCCCChHHHHHHHHH
Q psy12849         24 ASWFGVRTNRTTVVNTINES---SILIMAKKC----RVILNCVGPYTWYGEAVVKACIEAKTHHVDITGEPYFMEYMQYE   96 (138)
Q Consensus        24 a~~~~~~~~~~~~~D~~d~~---~L~~~~~~~----dvVIn~~GPf~~~~~~v~~Aci~~g~hYvDisge~~~~~~~~~~   96 (138)
                      ++.+-...+..+.+-++.+.   .+.++.+..    +++|-+.   +.....-++.|+++|..|+=.-+   +..++.  
T Consensus        31 ~~al~~~Gi~~iEit~~~~~a~~~i~~l~~~~~~~p~~~vGaG---TV~~~~~~~~a~~aGA~FivsP~---~~~~v~--  102 (213)
T PRK06552         31 SLAVIKGGIKAIEVTYTNPFASEVIKELVELYKDDPEVLIGAG---TVLDAVTARLAILAGAQFIVSPS---FNRETA--  102 (213)
T ss_pred             HHHHHHCCCCEEEEECCCccHHHHHHHHHHHcCCCCCeEEeee---eCCCHHHHHHHHHcCCCEEECCC---CCHHHH--
Confidence            33333356677777776664   455565554    5666554   44445678999999999986422   233333  


Q ss_pred             hHHHHHhCCCEEEeCCCCccchHhHHHHH
Q psy12849         97 YNTRAQESEVCVVSACGIETLPIDMGVLM  125 (138)
Q Consensus        97 ~~~~A~~~gv~iv~~~G~d~~p~dl~~~~  125 (138)
                        +.++++|+.++||+.   .|+++...+
T Consensus       103 --~~~~~~~i~~iPG~~---T~~E~~~A~  126 (213)
T PRK06552        103 --KICNLYQIPYLPGCM---TVTEIVTAL  126 (213)
T ss_pred             --HHHHHcCCCEECCcC---CHHHHHHHH
Confidence              457889999999998   777776543

>PRK09134 short chain dehydrogenase; Provisional

Probab=87.80  E-value=0.62  Score=36.00  Aligned_cols=33  Identities=9%  Similarity=0.234  Sum_probs=28.1

Q ss_pred             CCcceEEeeCCCHHHHHHHHhc-------CcEEEecCCCc
Q psy12849         30 RTNRTTVVNTINESSILIMAKK-------CRVILNCVGPY   62 (138)
Q Consensus        30 ~~~~~~~~D~~d~~~L~~~~~~-------~dvVIn~~GPf   62 (138)
                      .++.++.+|+.|.+++.+++++       .|+||||+|+.
T Consensus        59 ~~~~~~~~Dl~d~~~~~~~~~~~~~~~~~iD~vi~~ag~~   98 (258)
T PRK09134         59 RRAVALQADLADEAEVRALVARASAALGPITLLVNNASLF   98 (258)
T ss_pred             CeEEEEEcCCCCHHHHHHHHHHHHHHcCCCCEEEECCcCC
Confidence            3577899999999999988875       59999999964

>PRK05865 hypothetical protein; Provisional

Probab=87.77  E-value=1.5  Score=41.15  Aligned_cols=55  Identities=15%  Similarity=0.089  Sum_probs=43.3

Q ss_pred             CcceEEeeCCCHHHHHHHHhcCcEEEecCCCccc-------hhHHHHHHHHHcCC-CeeeCCC
Q psy12849         31 TNRTTVVNTINESSILIMAKKCRVILNCVGPYTW-------YGEAVVKACIEAKT-HHVDITG   85 (138)
Q Consensus        31 ~~~~~~~D~~d~~~L~~~~~~~dvVIn~~GPf~~-------~~~~v~~Aci~~g~-hYvDisg   85 (138)
                      ++.++..|+.|.+++.++++++|+||||+++...       -...++++|.+.|+ +.|=+|.
T Consensus        41 ~v~~v~gDL~D~~~l~~al~~vD~VVHlAa~~~~~~~vNv~GT~nLLeAa~~~gvkr~V~iSS  103 (854)
T PRK05865         41 SADFIAADIRDATAVESAMTGADVVAHCAWVRGRNDHINIDGTANVLKAMAETGTGRIVFTSS  103 (854)
T ss_pred             CceEEEeeCCCHHHHHHHHhCCCEEEECCCcccchHHHHHHHHHHHHHHHHHcCCCeEEEECC
Confidence            5778999999999999999999999999986421       12467899999886 4555543

>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]

Probab=87.68  E-value=1.4  Score=35.75  Aligned_cols=83  Identities=12%  Similarity=0.165  Sum_probs=60.5

Q ss_pred             CcceEEeeCCCHHHHHHHHhc--CcEEEecCCCccch-hHHHHHHHHHcCCCeeeC-------CCC-hHHHHHHHHHhHH
Q psy12849         31 TNRTTVVNTINESSILIMAKK--CRVILNCVGPYTWY-GEAVVKACIEAKTHHVDI-------TGE-PYFMEYMQYEYNT   99 (138)
Q Consensus        31 ~~~~~~~D~~d~~~L~~~~~~--~dvVIn~~GPf~~~-~~~v~~Aci~~g~hYvDi-------sge-~~~~~~~~~~~~~   99 (138)
                      ..+.+..-.-+.+.|.++++.  .+++|++.=||..- ..+.+++|-++|+.|+=.       .|+ +..+.++. +.-+
T Consensus        44 ~~~~~~~G~l~~e~l~~~l~e~~i~llIDATHPyAa~iS~Na~~aake~gipy~r~eRP~~~~~gd~~~~V~d~~-ea~~  122 (257)
T COG2099          44 IGPVRVGGFLGAEGLAAFLREEGIDLLIDATHPYAARISQNAARAAKETGIPYLRLERPPWAPNGDNWIEVADIE-EAAE  122 (257)
T ss_pred             cCCeeecCcCCHHHHHHHHHHcCCCEEEECCChHHHHHHHHHHHHHHHhCCcEEEEECCccccCCCceEEecCHH-HHHH
Confidence            345777788899999999995  79999999999844 789999999999999753       122 11123332 4445


Q ss_pred             HHHhCCCEEEeCCCC
Q psy12849        100 RAQESEVCVVSACGI  114 (138)
Q Consensus       100 ~A~~~gv~iv~~~G~  114 (138)
                      .+++.|-.++...|-
T Consensus       123 ~~~~~~~rVflt~G~  137 (257)
T COG2099         123 AAKQLGRRVFLTTGR  137 (257)
T ss_pred             HHhccCCcEEEecCc
Confidence            556667778877773

>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot

Probab=87.67  E-value=3  Score=28.34  Aligned_cols=60  Identities=18%  Similarity=0.141  Sum_probs=41.6

Q ss_pred             HHHHHh--cCcEEEecCCCccchhHHHHHHHHHcCCCeee---CCCChHHHHHHHHHhHHHHHhCCCEEEe
Q psy12849         45 ILIMAK--KCRVILNCVGPYTWYGEAVVKACIEAKTHHVD---ITGEPYFMEYMQYEYNTRAQESEVCVVS  110 (138)
Q Consensus        45 L~~~~~--~~dvVIn~~GPf~~~~~~v~~Aci~~g~hYvD---isge~~~~~~~~~~~~~~A~~~gv~iv~  110 (138)
                      +.++++  +.|+|+-|. |...+ .++++.|++.|.|.+=   ++-...-.+    ++-+.++++|+.+..
T Consensus        54 ~~~ll~~~~~D~V~I~t-p~~~h-~~~~~~~l~~g~~v~~EKP~~~~~~~~~----~l~~~a~~~~~~~~V  118 (120)
T PF01408_consen   54 LEELLADEDVDAVIIAT-PPSSH-AEIAKKALEAGKHVLVEKPLALTLEEAE----ELVEAAKEKGVKVMV  118 (120)
T ss_dssp             HHHHHHHTTESEEEEES-SGGGH-HHHHHHHHHTTSEEEEESSSSSSHHHHH----HHHHHHHHHTSCEEE
T ss_pred             HHHHHHhhcCCEEEEec-CCcch-HHHHHHHHHcCCEEEEEcCCcCCHHHHH----HHHHHHHHhCCEEEE
Confidence            556666  689999999 54555 4789999999997653   333433333    444778888887654

GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....

>PLN00016 RNA-binding protein; Provisional

Probab=87.55  E-value=0.68  Score=38.39  Aligned_cols=48  Identities=10%  Similarity=-0.038  Sum_probs=36.8

Q ss_pred             CcceEEeeCCCHHHHHHHH--hcCcEEEecCCCccchhHHHHHHHHHcCC-Cee
Q psy12849         31 TNRTTVVNTINESSILIMA--KKCRVILNCVGPYTWYGEAVVKACIEAKT-HHV   81 (138)
Q Consensus        31 ~~~~~~~D~~d~~~L~~~~--~~~dvVIn~~GPf~~~~~~v~~Aci~~g~-hYv   81 (138)
                      .++++..|+.|   +.+++  .++|+||++.|.......+++++|.+.|+ ++|
T Consensus       111 ~v~~v~~D~~d---~~~~~~~~~~d~Vi~~~~~~~~~~~~ll~aa~~~gvkr~V  161 (378)
T PLN00016        111 GVKTVWGDPAD---VKSKVAGAGFDVVYDNNGKDLDEVEPVADWAKSPGLKQFL  161 (378)
T ss_pred             CceEEEecHHH---HHhhhccCCccEEEeCCCCCHHHHHHHHHHHHHcCCCEEE
Confidence            47788888876   44444  47999999998765556789999999998 565

>PRK05884 short chain dehydrogenase; Provisional

Probab=87.40  E-value=0.88  Score=34.80  Aligned_cols=32  Identities=16%  Similarity=0.165  Sum_probs=27.2

Q ss_pred             CcceEEeeCCCHHHHHHHHh----cCcEEEecCCCc
Q psy12849         31 TNRTTVVNTINESSILIMAK----KCRVILNCVGPY   62 (138)
Q Consensus        31 ~~~~~~~D~~d~~~L~~~~~----~~dvVIn~~GPf   62 (138)
                      +..++++|+.|++++.++++    ..|++||++||.
T Consensus        45 ~~~~~~~D~~~~~~v~~~~~~~~~~id~lv~~ag~~   80 (223)
T PRK05884         45 DVDAIVCDNTDPASLEEARGLFPHHLDTIVNVPAPS   80 (223)
T ss_pred             cCcEEecCCCCHHHHHHHHHHHhhcCcEEEECCCcc
Confidence            35788999999999998887    479999999874

>PRK07856 short chain dehydrogenase; Provisional

Probab=87.38  E-value=0.7  Score=35.56  Aligned_cols=33  Identities=12%  Similarity=0.211  Sum_probs=28.1

Q ss_pred             CCcceEEeeCCCHHHHHHHHhcC-------cEEEecCCCc
Q psy12849         30 RTNRTTVVNTINESSILIMAKKC-------RVILNCVGPY   62 (138)
Q Consensus        30 ~~~~~~~~D~~d~~~L~~~~~~~-------dvVIn~~GPf   62 (138)
                      .++.++++|+.+++++.+++++.       |+|||++|..
T Consensus        47 ~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~vi~~ag~~   86 (252)
T PRK07856         47 RPAEFHAADVRDPDQVAALVDAIVERHGRLDVLVNNAGGS   86 (252)
T ss_pred             CceEEEEccCCCHHHHHHHHHHHHHHcCCCCEEEECCCCC
Confidence            35778999999999999888764       9999999853

>PRK09291 short chain dehydrogenase; Provisional

Probab=87.38  E-value=1  Score=34.40  Aligned_cols=32  Identities=19%  Similarity=0.142  Sum_probs=28.5

Q ss_pred             CcceEEeeCCCHHHHHHHHh-cCcEEEecCCCc
Q psy12849         31 TNRTTVVNTINESSILIMAK-KCRVILNCVGPY   62 (138)
Q Consensus        31 ~~~~~~~D~~d~~~L~~~~~-~~dvVIn~~GPf   62 (138)
                      ++.++.+|+.|++++.+.+. +.|+|||++|+.
T Consensus        52 ~~~~~~~D~~~~~~~~~~~~~~id~vi~~ag~~   84 (257)
T PRK09291         52 ALRVEKLDLTDAIDRAQAAEWDVDVLLNNAGIG   84 (257)
T ss_pred             cceEEEeeCCCHHHHHHHhcCCCCEEEECCCcC
Confidence            57889999999999999887 799999999853

>TIGR01472 gmd GDP-mannose 4,6-dehydratase

Probab=87.33  E-value=0.9  Score=36.86  Aligned_cols=48  Identities=8%  Similarity=-0.060  Sum_probs=38.5

Q ss_pred             CcceEEeeCCCHHHHHHHHhc--CcEEEecCCCccc----------------hhHHHHHHHHHcCC
Q psy12849         31 TNRTTVVNTINESSILIMAKK--CRVILNCVGPYTW----------------YGEAVVKACIEAKT   78 (138)
Q Consensus        31 ~~~~~~~D~~d~~~L~~~~~~--~dvVIn~~GPf~~----------------~~~~v~~Aci~~g~   78 (138)
                      +++++.+|+.|.+++.+++++  .|+||||+++...                -...++++|.+.|+
T Consensus        56 ~~~~~~~Dl~d~~~l~~~~~~~~~d~ViH~Aa~~~~~~~~~~~~~~~~~n~~gt~~ll~a~~~~~~  121 (343)
T TIGR01472        56 RMKLHYGDLTDSSNLRRIIDEIKPTEIYNLAAQSHVKVSFEIPEYTADVDGIGTLRLLEAVRTLGL  121 (343)
T ss_pred             ceeEEEeccCCHHHHHHHHHhCCCCEEEECCcccccchhhhChHHHHHHHHHHHHHHHHHHHHhCC
Confidence            578999999999999999996  5999999985220                01468899998875

Excluded from this model are members of the clade that score poorly because of highly dervied (phylogenetically long-branch) sequences, e.g. Aneurinibacillus thermoaerophilus Gmd, described as a bifunctional GDP-mannose 4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase (PUBMED:11096116).

>PRK08267 short chain dehydrogenase; Provisional

Probab=87.23  E-value=0.73  Score=35.56  Aligned_cols=33  Identities=12%  Similarity=0.117  Sum_probs=28.2

Q ss_pred             CCcceEEeeCCCHHHHHHHHhc--------CcEEEecCCCc
Q psy12849         30 RTNRTTVVNTINESSILIMAKK--------CRVILNCVGPY   62 (138)
Q Consensus        30 ~~~~~~~~D~~d~~~L~~~~~~--------~dvVIn~~GPf   62 (138)
                      .++.++++|+.|++++.+++++        .|+||||+|..
T Consensus        48 ~~~~~~~~D~~~~~~v~~~~~~~~~~~~~~id~vi~~ag~~   88 (260)
T PRK08267         48 GNAWTGALDVTDRAAWDAALADFAAATGGRLDVLFNNAGIL   88 (260)
T ss_pred             CceEEEEecCCCHHHHHHHHHHHHHHcCCCCCEEEECCCCC
Confidence            4688999999999999988774        49999999964

>COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism]

Probab=87.23  E-value=0.75  Score=38.93  Aligned_cols=78  Identities=13%  Similarity=0.209  Sum_probs=51.4

Q ss_pred             CHHHHHHHHhcCcEEEecCCCccchhHHHHHHHHHcCCCeeeCCCChHHH-----H------------------HHHHHh
Q psy12849         41 NESSILIMAKKCRVILNCVGPYTWYGEAVVKACIEAKTHHVDITGEPYFM-----E------------------YMQYEY   97 (138)
Q Consensus        41 d~~~L~~~~~~~dvVIn~~GPf~~~~~~v~~Aci~~g~hYvDisge~~~~-----~------------------~~~~~~   97 (138)
                      |++.+  ...+||+|+-|. |- -.+..++..-++.|+.-||+|++.-+-     +                  .+-+-+
T Consensus        62 ~~~~~--~~~~~DvvFlal-Ph-g~s~~~v~~l~~~g~~VIDLSadfR~~d~~~ye~~Yg~~h~~~~~l~~avYGLpEl~  137 (349)
T COG0002          62 DPEKI--ELDECDVVFLAL-PH-GVSAELVPELLEAGCKVIDLSADFRLKDPEVYEKWYGFTHAGPELLEDAVYGLPELH  137 (349)
T ss_pred             Chhhh--hcccCCEEEEec-Cc-hhHHHHHHHHHhCCCeEEECCcccccCCHHHHHHhhCCCCCCchhhhcccccCcccC
Confidence            44444  456799999999 74 455788999999999999999984442     1                  111112


Q ss_pred             HHHHHhCCCEEEeCCCCccchHhHHHH
Q psy12849         98 NTRAQESEVCVVSACGIETLPIDMGVL  124 (138)
Q Consensus        98 ~~~A~~~gv~iv~~~G~d~~p~dl~~~  124 (138)
                      .++.+.+.....|||=  |.-+.+...
T Consensus       138 ~e~i~~A~lIAnPGCy--pTa~iLal~  162 (349)
T COG0002         138 REKIRGAKLIANPGCY--PTAAILALA  162 (349)
T ss_pred             HHHHhcCCEeeCCCch--HHHHHHHHH
Confidence            2556666777777764  444444444

>PF00389 2-Hacid_dh: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain; InterPro: IPR006139 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related

Probab=87.15  E-value=3.3  Score=29.19  Aligned_cols=76  Identities=14%  Similarity=0.172  Sum_probs=49.5

Q ss_pred             cceEEeeCCCHHHHHHHHhcCcEEEecCCCccchhHHHHHHHHHcCCCeeeCCCChHHHHHHHHHhHHHHHhCCCEEEeC
Q psy12849         32 NRTTVVNTINESSILIMAKKCRVILNCVGPYTWYGEAVVKACIEAKTHHVDITGEPYFMEYMQYEYNTRAQESEVCVVSA  111 (138)
Q Consensus        32 ~~~~~~D~~d~~~L~~~~~~~dvVIn~~GPf~~~~~~v~~Aci~~g~hYvDisge~~~~~~~~~~~~~~A~~~gv~iv~~  111 (138)
                      +++...+..+.+++.+.++++|++|-..+|  .....+++.|  .+.-+|-..|...  ..+  . -+.|+++|+.+.+.
T Consensus        19 ~~v~~~~~~~~~~~~~~l~~~d~ii~~~~~--~~~~~~l~~~--~~Lk~I~~~~~G~--d~i--d-~~~a~~~gI~V~n~   89 (133)
T PF00389_consen   19 FEVEFCDSPSEEELAERLKDADAIIVGSGT--PLTAEVLEAA--PNLKLISTAGAGV--DNI--D-LEAAKERGIPVTNV   89 (133)
T ss_dssp             SEEEEESSSSHHHHHHHHTTESEEEESTTS--TBSHHHHHHH--TT-SEEEESSSSC--TTB----HHHHHHTTSEEEE-
T ss_pred             ceEEEeCCCCHHHHHHHhCCCeEEEEcCCC--CcCHHHHhcc--ceeEEEEEccccc--Ccc--c-HHHHhhCeEEEEEe
Confidence            466677778899999999999999976665  3346788887  4444443322211  110  0 14688899999999


Q ss_pred             CCCcc
Q psy12849        112 CGIET  116 (138)
Q Consensus       112 ~G~d~  116 (138)
                      -|..+
T Consensus        90 ~g~~~   94 (133)
T PF00389_consen   90 PGYNA   94 (133)
T ss_dssp             TTTTH
T ss_pred             CCcCC
Confidence            98533

The catalytic domain contains a number of conserved charged residues which may play a role in the catalytic mechanism. The NAD-binding domain is described in IPR006140 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 2DLD_A 2G76_B 3DC2_B 1YGY_B 3DDN_A 3KB6_B 3K5P_A 3EVT_A 1WWK_B 1GDH_A ....

>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated

Probab=87.07  E-value=1.3  Score=39.80  Aligned_cols=53  Identities=19%  Similarity=0.142  Sum_probs=40.0

Q ss_pred             CCcceEEeeCCCHHH-HHHHHhcCcEEEecCCCccc----------------hhHHHHHHHHHcCCCeee
Q psy12849         30 RTNRTTVVNTINESS-ILIMAKKCRVILNCVGPYTW----------------YGEAVVKACIEAKTHHVD   82 (138)
Q Consensus        30 ~~~~~~~~D~~d~~~-L~~~~~~~dvVIn~~GPf~~----------------~~~~v~~Aci~~g~hYvD   82 (138)
                      .+++++..|+.|.++ +.++++++|+|||+|+-...                -...++++|.++|.++|=
T Consensus       360 ~~~~~~~gDl~d~~~~l~~~l~~~D~ViHlAa~~~~~~~~~~~~~~~~~Nv~~t~~ll~a~~~~~~~~V~  429 (660)
T PRK08125        360 PRFHFVEGDISIHSEWIEYHIKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLKIIRYCVKYNKRIIF  429 (660)
T ss_pred             CceEEEeccccCcHHHHHHHhcCCCEEEECccccCchhhccCHHHHHHhhHHHHHHHHHHHHhcCCeEEE
Confidence            357888999998655 67888999999999973220                014688999999888763

>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]

Probab=87.01  E-value=0.7  Score=37.63  Aligned_cols=36  Identities=11%  Similarity=0.221  Sum_probs=30.1

Q ss_pred             CCcceEEeeCCCHHHHHHHHh-------cCcEEEecCCCccchh
Q psy12849         30 RTNRTTVVNTINESSILIMAK-------KCRVILNCVGPYTWYG   66 (138)
Q Consensus        30 ~~~~~~~~D~~d~~~L~~~~~-------~~dvVIn~~GPf~~~~   66 (138)
                      -++.++.+|+++++++.++..       ..|++||+|| |..++
T Consensus        56 v~v~vi~~DLs~~~~~~~l~~~l~~~~~~IdvLVNNAG-~g~~g   98 (265)
T COG0300          56 VEVEVIPADLSDPEALERLEDELKERGGPIDVLVNNAG-FGTFG   98 (265)
T ss_pred             ceEEEEECcCCChhHHHHHHHHHHhcCCcccEEEECCC-cCCcc
Confidence            357899999999999998876       5899999998 55554

>PLN02650 dihydroflavonol-4-reductase

Probab=86.96  E-value=0.82  Score=37.21  Aligned_cols=47  Identities=19%  Similarity=0.227  Sum_probs=37.4

Q ss_pred             CcceEEeeCCCHHHHHHHHhcCcEEEecCCCccch---------------hHHHHHHHHHcC
Q psy12849         31 TNRTTVVNTINESSILIMAKKCRVILNCVGPYTWY---------------GEAVVKACIEAK   77 (138)
Q Consensus        31 ~~~~~~~D~~d~~~L~~~~~~~dvVIn~~GPf~~~---------------~~~v~~Aci~~g   77 (138)
                      ++.++..|+.|.+.+.++++++|.|||++++....               ...++++|.+.+
T Consensus        57 ~~~~v~~Dl~d~~~~~~~~~~~d~ViH~A~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~~  118 (351)
T PLN02650         57 RLTLWKADLAVEGSFDDAIRGCTGVFHVATPMDFESKDPENEVIKPTVNGMLSIMKACAKAK  118 (351)
T ss_pred             ceEEEEecCCChhhHHHHHhCCCEEEEeCCCCCCCCCCchhhhhhHHHHHHHHHHHHHHhcC
Confidence            57888999999999999999999999999864211               124678888766

>PRK08219 short chain dehydrogenase; Provisional

Probab=86.94  E-value=1.1  Score=33.56  Aligned_cols=32  Identities=13%  Similarity=0.156  Sum_probs=28.6

Q ss_pred             CcceEEeeCCCHHHHHHHHh---cCcEEEecCCCc
Q psy12849         31 TNRTTVVNTINESSILIMAK---KCRVILNCVGPY   62 (138)
Q Consensus        31 ~~~~~~~D~~d~~~L~~~~~---~~dvVIn~~GPf   62 (138)
                      .+.++++|+.|++++.++++   +.|.||+++|+.
T Consensus        48 ~~~~~~~D~~~~~~~~~~~~~~~~id~vi~~ag~~   82 (227)
T PRK08219         48 GATPFPVDLTDPEAIAAAVEQLGRLDVLVHNAGVA   82 (227)
T ss_pred             cceEEecCCCCHHHHHHHHHhcCCCCEEEECCCcC
Confidence            57889999999999999998   489999999974

>PRK09009 C factor cell-cell signaling protein; Provisional

Probab=86.90  E-value=1  Score=34.07  Aligned_cols=34  Identities=18%  Similarity=0.361  Sum_probs=27.9

Q ss_pred             CCcceEEeeCCCHHHHHHHHh---cCcEEEecCCCcc
Q psy12849         30 RTNRTTVVNTINESSILIMAK---KCRVILNCVGPYT   63 (138)
Q Consensus        30 ~~~~~~~~D~~d~~~L~~~~~---~~dvVIn~~GPf~   63 (138)
                      .++.++++|++|++++.++.+   +.|++||++|...
T Consensus        43 ~~~~~~~~Dls~~~~~~~~~~~~~~id~li~~aG~~~   79 (235)
T PRK09009         43 DNVQWHALDVTDEAEIKQLSEQFTQLDWLINCVGMLH   79 (235)
T ss_pred             CceEEEEecCCCHHHHHHHHHhcCCCCEEEECCcccc
Confidence            467789999999998877655   5799999999754

>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=86.90  E-value=0.88  Score=34.57  Aligned_cols=34  Identities=6%  Similarity=0.068  Sum_probs=29.2

Q ss_pred             CCcceEEeeCCCHHHHHHHHh-------cCcEEEecCCCcc
Q psy12849         30 RTNRTTVVNTINESSILIMAK-------KCRVILNCVGPYT   63 (138)
Q Consensus        30 ~~~~~~~~D~~d~~~L~~~~~-------~~dvVIn~~GPf~   63 (138)
                      .++.++.+|+.+++++.++++       +.|+|||++|+..
T Consensus        56 ~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~vi~~ag~~~   96 (239)
T PRK07666         56 VKVVIATADVSDYEEVTAAIEQLKNELGSIDILINNAGISK   96 (239)
T ss_pred             CeEEEEECCCCCHHHHHHHHHHHHHHcCCccEEEEcCcccc
Confidence            367889999999999999887       5899999998753

>PRK06138 short chain dehydrogenase; Provisional

Probab=86.89  E-value=1  Score=34.32  Aligned_cols=33  Identities=9%  Similarity=0.038  Sum_probs=28.3

Q ss_pred             CCcceEEeeCCCHHHHHHHHh-------cCcEEEecCCCc
Q psy12849         30 RTNRTTVVNTINESSILIMAK-------KCRVILNCVGPY   62 (138)
Q Consensus        30 ~~~~~~~~D~~d~~~L~~~~~-------~~dvVIn~~GPf   62 (138)
                      .++.++.+|+.|++++.++++       +.|+||||+|..
T Consensus        53 ~~~~~~~~D~~~~~~~~~~~~~i~~~~~~id~vi~~ag~~   92 (252)
T PRK06138         53 GRAFARQGDVGSAEAVEALVDFVAARWGRLDVLVNNAGFG   92 (252)
T ss_pred             CeEEEEEcCCCCHHHHHHHHHHHHHHcCCCCEEEECCCCC
Confidence            357889999999999998876       579999999964

>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate

Probab=86.84  E-value=1.1  Score=31.43  Aligned_cols=36  Identities=11%  Similarity=0.197  Sum_probs=29.9

Q ss_pred             hcCcEEEecCCCccchhHHHHHHHHHcCCCeeeCCCCh
Q psy12849         50 KKCRVILNCVGPYTWYGEAVVKACIEAKTHHVDITGEP   87 (138)
Q Consensus        50 ~~~dvVIn~~GPf~~~~~~v~~Aci~~g~hYvDisge~   87 (138)
                      +++|+|+.|++.  ......+...++.|+.-||++++.
T Consensus        65 ~~~Dvvf~a~~~--~~~~~~~~~~~~~g~~ViD~s~~~  100 (121)
T PF01118_consen   65 SDVDVVFLALPH--GASKELAPKLLKAGIKVIDLSGDF  100 (121)
T ss_dssp             TTESEEEE-SCH--HHHHHHHHHHHHTTSEEEESSSTT
T ss_pred             hcCCEEEecCch--hHHHHHHHHHhhCCcEEEeCCHHH
Confidence            899999999953  334688999999999999999984

This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....

>PRK08220 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated

Probab=86.81  E-value=1  Score=34.40  Aligned_cols=33  Identities=15%  Similarity=0.262  Sum_probs=28.7

Q ss_pred             CCcceEEeeCCCHHHHHHHHhc-------CcEEEecCCCc
Q psy12849         30 RTNRTTVVNTINESSILIMAKK-------CRVILNCVGPY   62 (138)
Q Consensus        30 ~~~~~~~~D~~d~~~L~~~~~~-------~dvVIn~~GPf   62 (138)
                      .++.++++|+.|++++.+++++       .|++||++|+.
T Consensus        48 ~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~vi~~ag~~   87 (252)
T PRK08220         48 YPFATFVLDVSDAAAVAQVCQRLLAETGPLDVLVNAAGIL   87 (252)
T ss_pred             CceEEEEecCCCHHHHHHHHHHHHHHcCCCCEEEECCCcC
Confidence            3578899999999999998875       69999999965

>PRK05867 short chain dehydrogenase; Provisional

Probab=86.81  E-value=1  Score=34.68  Aligned_cols=34  Identities=9%  Similarity=0.046  Sum_probs=28.6

Q ss_pred             CCcceEEeeCCCHHHHHHHHh-------cCcEEEecCCCcc
Q psy12849         30 RTNRTTVVNTINESSILIMAK-------KCRVILNCVGPYT   63 (138)
Q Consensus        30 ~~~~~~~~D~~d~~~L~~~~~-------~~dvVIn~~GPf~   63 (138)
                      .++..+.+|+.|++++.++++       +.|++||++|.+.
T Consensus        58 ~~~~~~~~D~~~~~~~~~~~~~~~~~~g~id~lv~~ag~~~   98 (253)
T PRK05867         58 GKVVPVCCDVSQHQQVTSMLDQVTAELGGIDIAVCNAGIIT   98 (253)
T ss_pred             CeEEEEEccCCCHHHHHHHHHHHHHHhCCCCEEEECCCCCC
Confidence            356788999999999988876       5799999999653

>PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=86.76  E-value=1.2  Score=34.27  Aligned_cols=32  Identities=16%  Similarity=0.116  Sum_probs=27.5

Q ss_pred             CcceEEeeCCCHHHHHHHHh-------cCcEEEecCCCc
Q psy12849         31 TNRTTVVNTINESSILIMAK-------KCRVILNCVGPY   62 (138)
Q Consensus        31 ~~~~~~~D~~d~~~L~~~~~-------~~dvVIn~~GPf   62 (138)
                      ++.++.+|+.|++++.++++       +.|++|||+|..
T Consensus        52 ~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id~li~~ag~~   90 (255)
T PRK06463         52 GVFTIKCDVGNRDQVKKSKEVVEKEFGRVDVLVNNAGIM   90 (255)
T ss_pred             CCeEEEecCCCHHHHHHHHHHHHHHcCCCCEEEECCCcC
Confidence            46789999999999999887       469999999864

>PRK07453 protochlorophyllide oxidoreductase; Validated

Probab=86.68  E-value=0.9  Score=36.58  Aligned_cols=33  Identities=6%  Similarity=0.054  Sum_probs=28.5

Q ss_pred             CCcceEEeeCCCHHHHHHHHhc-------CcEEEecCCCc
Q psy12849         30 RTNRTTVVNTINESSILIMAKK-------CRVILNCVGPY   62 (138)
Q Consensus        30 ~~~~~~~~D~~d~~~L~~~~~~-------~dvVIn~~GPf   62 (138)
                      .++.++.+|+.|.+++.++++.       .|++||++|.+
T Consensus        55 ~~~~~~~~Dl~~~~~v~~~~~~~~~~~~~iD~li~nAg~~   94 (322)
T PRK07453         55 DSYTIIHIDLGDLDSVRRFVDDFRALGKPLDALVCNAAVY   94 (322)
T ss_pred             CceEEEEecCCCHHHHHHHHHHHHHhCCCccEEEECCccc
Confidence            3678899999999999998875       79999999953

>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated

Probab=86.68  E-value=0.82  Score=38.08  Aligned_cols=40  Identities=13%  Similarity=0.193  Sum_probs=32.7

Q ss_pred             HHhcCcEEEecCCCccchhHHHHHHHHHcCCCeeeCCCChHH
Q psy12849         48 MAKKCRVILNCVGPYTWYGEAVVKACIEAKTHHVDITGEPYF   89 (138)
Q Consensus        48 ~~~~~dvVIn~~GPf~~~~~~v~~Aci~~g~hYvDisge~~~   89 (138)
                      ..+++|+|+-|+ |...+ ..++..|+++|+|-||.|++..+
T Consensus        65 ~~~~vD~Vf~al-P~~~~-~~~v~~a~~aG~~VID~S~~fR~  104 (343)
T PRK00436         65 ILAGADVVFLAL-PHGVS-MDLAPQLLEAGVKVIDLSADFRL  104 (343)
T ss_pred             HhcCCCEEEECC-CcHHH-HHHHHHHHhCCCEEEECCcccCC
Confidence            447899999999 54544 58889999999999999998644

>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional

Probab=86.67  E-value=1.1  Score=37.44  Aligned_cols=40  Identities=13%  Similarity=0.033  Sum_probs=33.7

Q ss_pred             HHHHHhcCcEEEecCCCccchhHHHHHHHHHcCCCeeeCCCC
Q psy12849         45 ILIMAKKCRVILNCVGPYTWYGEAVVKACIEAKTHHVDITGE   86 (138)
Q Consensus        45 L~~~~~~~dvVIn~~GPf~~~~~~v~~Aci~~g~hYvDisge   86 (138)
                      +..+++++|+|+.|+||+..  ...++.|+++|+..||.+++
T Consensus        72 ~~el~~~vDVVIdaT~~~~~--~e~a~~~~~aGk~VI~~~~~  111 (341)
T PRK04207         72 IEDLLEKADIVVDATPGGVG--AKNKELYEKAGVKAIFQGGE  111 (341)
T ss_pred             hhHhhccCCEEEECCCchhh--HHHHHHHHHCCCEEEEcCCC
Confidence            44556789999999988743  57889999999999999986

>PRK08643 acetoin reductase; Validated

Probab=86.56  E-value=1  Score=34.52  Aligned_cols=33  Identities=9%  Similarity=0.192  Sum_probs=27.9

Q ss_pred             CCcceEEeeCCCHHHHHHHHhc-------CcEEEecCCCc
Q psy12849         30 RTNRTTVVNTINESSILIMAKK-------CRVILNCVGPY   62 (138)
Q Consensus        30 ~~~~~~~~D~~d~~~L~~~~~~-------~dvVIn~~GPf   62 (138)
                      .++.++.+|+.|++++.++++.       .|++|||+|.+
T Consensus        51 ~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id~vi~~ag~~   90 (256)
T PRK08643         51 GKAIAVKADVSDRDQVFAAVRQVVDTFGDLNVVVNNAGVA   90 (256)
T ss_pred             CeEEEEECCCCCHHHHHHHHHHHHHHcCCCCEEEECCCCC
Confidence            3567899999999998888874       69999999864

>PRK10084 dTDP-glucose 4,6 dehydratase; Provisional

Probab=86.47  E-value=1  Score=36.42  Aligned_cols=32  Identities=0%  Similarity=-0.052  Sum_probs=28.4

Q ss_pred             CcceEEeeCCCHHHHHHHHhc--CcEEEecCCCc
Q psy12849         31 TNRTTVVNTINESSILIMAKK--CRVILNCVGPY   62 (138)
Q Consensus        31 ~~~~~~~D~~d~~~L~~~~~~--~dvVIn~~GPf   62 (138)
                      +++++..|+.|.+++.+++++  .|+||||+|+.
T Consensus        51 ~~~~~~~Dl~d~~~~~~~~~~~~~d~vih~A~~~   84 (352)
T PRK10084         51 RYVFEHADICDRAELDRIFAQHQPDAVMHLAAES   84 (352)
T ss_pred             ceEEEEecCCCHHHHHHHHHhcCCCEEEECCccc
Confidence            467889999999999999985  79999999864

>PRK11579 putative oxidoreductase; Provisional

Probab=86.44  E-value=5.8  Score=32.58  Aligned_cols=75  Identities=15%  Similarity=0.011  Sum_probs=49.1

Q ss_pred             HHHHHHh--cCcEEEecCCCccchhHHHHHHHHHcCCCeeeCCCChHHH---HHHHHHhHHHHHhCCCEEEeCCCCccch
Q psy12849         44 SILIMAK--KCRVILNCVGPYTWYGEAVVKACIEAKTHHVDITGEPYFM---EYMQYEYNTRAQESEVCVVSACGIETLP  118 (138)
Q Consensus        44 ~L~~~~~--~~dvVIn~~GPf~~~~~~v~~Aci~~g~hYvDisge~~~~---~~~~~~~~~~A~~~gv~iv~~~G~d~~p  118 (138)
                      +++++++  +.|+|+-|. |-..+ .+++..|+++|.|-+=   |-|+.   ++. .++-+.|+++|+.+..+.-.--.|
T Consensus        55 ~~~ell~~~~vD~V~I~t-p~~~H-~~~~~~al~aGkhVl~---EKPla~t~~ea-~~l~~~a~~~g~~l~v~~~~R~~p  128 (346)
T PRK11579         55 EPQHLFNDPNIDLIVIPT-PNDTH-FPLAKAALEAGKHVVV---DKPFTVTLSQA-RELDALAKSAGRVLSVFHNRRWDS  128 (346)
T ss_pred             CHHHHhcCCCCCEEEEcC-CcHHH-HHHHHHHHHCCCeEEE---eCCCCCCHHHH-HHHHHHHHHhCCEEEEEeeccCCH
Confidence            3566775  579999999 54555 4789999999999872   32221   222 244567888999887665544455


Q ss_pred             HhHHHH
Q psy12849        119 IDMGVL  124 (138)
Q Consensus       119 ~dl~~~  124 (138)
                      .-..+.
T Consensus       129 ~~~~~k  134 (346)
T PRK11579        129 DFLTLK  134 (346)
T ss_pred             HHHHHH
Confidence            544443

>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E

Probab=86.39  E-value=3.4  Score=31.73  Aligned_cols=42  Identities=12%  Similarity=0.373  Sum_probs=34.7

Q ss_pred             CHHHHHHHHhcCcEEEecCCCccchhHHHHHHHHHcCCCeeeC
Q psy12849         41 NESSILIMAKKCRVILNCVGPYTWYGEAVVKACIEAKTHHVDI   83 (138)
Q Consensus        41 d~~~L~~~~~~~dvVIn~~GPf~~~~~~v~~Aci~~g~hYvDi   83 (138)
                      +++.+.++++++|+||.|.+.+. .-.-+-+.|.+.++++|+.
T Consensus       101 ~~~~~~~~~~~~D~Vi~~~d~~~-~r~~l~~~~~~~~ip~i~~  142 (202)
T TIGR02356       101 TAENLELLINNVDLVLDCTDNFA-TRYLINDACVALGTPLISA  142 (202)
T ss_pred             CHHHHHHHHhCCCEEEECCCCHH-HHHHHHHHHHHcCCCEEEE
Confidence            44678889999999999997654 3456889999999999985

coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.

>PLN00141 Tic62-NAD(P)-related group II protein; Provisional

Probab=86.38  E-value=3  Score=32.30  Aligned_cols=47  Identities=11%  Similarity=0.189  Sum_probs=34.6

Q ss_pred             CcceEEeeCCC-HHHHHHHH-hcCcEEEecCCCccch------------hHHHHHHHHHcC
Q psy12849         31 TNRTTVVNTIN-ESSILIMA-KKCRVILNCVGPYTWY------------GEAVVKACIEAK   77 (138)
Q Consensus        31 ~~~~~~~D~~d-~~~L~~~~-~~~dvVIn~~GPf~~~------------~~~v~~Aci~~g   77 (138)
                      ++.+++.|+.| .+++.+.+ .++|+||+++|+....            ...+++++.+.|
T Consensus        63 ~~~~~~~Dl~d~~~~l~~~~~~~~d~vi~~~g~~~~~~~~~~~~~n~~~~~~ll~a~~~~~  123 (251)
T PLN00141         63 SLQIVRADVTEGSDKLVEAIGDDSDAVICATGFRRSFDPFAPWKVDNFGTVNLVEACRKAG  123 (251)
T ss_pred             ceEEEEeeCCCCHHHHHHHhhcCCCEEEECCCCCcCCCCCCceeeehHHHHHHHHHHHHcC
Confidence            57889999988 57788888 6899999999753210            246677777665

>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type

Probab=86.36  E-value=1.5  Score=35.51  Aligned_cols=76  Identities=18%  Similarity=0.106  Sum_probs=46.3

Q ss_pred             HHHHHHHhcCcEEEecCCCccch-hHHHHHHH--------HHcCCCeeeCCCChHHHHHHHHHhHHHHHhCCCEEEeCCC
Q psy12849         43 SSILIMAKKCRVILNCVGPYTWY-GEAVVKAC--------IEAKTHHVDITGEPYFMEYMQYEYNTRAQESEVCVVSACG  113 (138)
Q Consensus        43 ~~L~~~~~~~dvVIn~~GPf~~~-~~~v~~Ac--------i~~g~hYvDisge~~~~~~~~~~~~~~A~~~gv~iv~~~G  113 (138)
                      +++...+.++|+||||. |-... ....+..+        +..+...+|+...+.-+     .|-..|+++|..++.|.+
T Consensus       182 ~~~~~~~~~~DiVInaT-p~g~~~~~~~l~~~~~~~~~~~~~~~~~v~D~vY~P~~T-----~ll~~A~~~G~~~~~Gl~  255 (282)
T TIGR01809       182 SGGLAIEKAAEVLVSTV-PADVPADYVDLFATVPFLLLKRKSSEGIFLDAAYDPWPT-----PLVAIVSAAGWRVISGLQ  255 (282)
T ss_pred             hhhhhcccCCCEEEECC-CCCCCCCHHHhhhhhhhhccccCCCCcEEEEEeeCCCCC-----HHHHHHHHCCCEEECcHH
Confidence            34556668899999998 43322 11212211        23467789998765443     333678889999987665


Q ss_pred             CccchHhHHHHHHHHHhh
Q psy12849        114 IETLPIDMGVLMLQDSFE  131 (138)
Q Consensus       114 ~d~~p~dl~~~~~~~~~~  131 (138)
                             |+.+....+|+
T Consensus       256 -------MLv~Qa~~~f~  266 (282)
T TIGR01809       256 -------MLLHQGFAQFE  266 (282)
T ss_pred             -------HHHHHHHHHHH
Confidence                   45555555544

This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.

>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional

Probab=86.27  E-value=0.95  Score=34.67  Aligned_cols=32  Identities=13%  Similarity=0.171  Sum_probs=27.8

Q ss_pred             CcceEEeeCCCHHHHHHHHhc-------CcEEEecCCCc
Q psy12849         31 TNRTTVVNTINESSILIMAKK-------CRVILNCVGPY   62 (138)
Q Consensus        31 ~~~~~~~D~~d~~~L~~~~~~-------~dvVIn~~GPf   62 (138)
                      ++.++++|+.|++++.+++++       .|+||+|+|..
T Consensus        57 ~~~~~~~Dl~~~~~~~~~~~~~~~~~~~~d~vi~~ag~~   95 (262)
T PRK13394         57 KAIGVAMDVTNEDAVNAGIDKVAERFGSVDILVSNAGIQ   95 (262)
T ss_pred             eEEEEECCCCCHHHHHHHHHHHHHHcCCCCEEEECCccC
Confidence            567899999999999988875       79999999864

>PRK06482 short chain dehydrogenase; Provisional

Probab=86.20  E-value=1.1  Score=34.96  Aligned_cols=33  Identities=6%  Similarity=0.110  Sum_probs=28.2

Q ss_pred             CCcceEEeeCCCHHHHHHHHhc-------CcEEEecCCCc
Q psy12849         30 RTNRTTVVNTINESSILIMAKK-------CRVILNCVGPY   62 (138)
Q Consensus        30 ~~~~~~~~D~~d~~~L~~~~~~-------~dvVIn~~GPf   62 (138)
                      .++.++.+|+.|.+++.+++++       .|+|||++|..
T Consensus        48 ~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~vi~~ag~~   87 (276)
T PRK06482         48 DRLWVLQLDVTDSAAVRAVVDRAFAALGRIDVVVSNAGYG   87 (276)
T ss_pred             CceEEEEccCCCHHHHHHHHHHHHHHcCCCCEEEECCCCC
Confidence            3678899999999999888764       69999999864

>PRK10675 UDP-galactose-4-epimerase; Provisional

Probab=86.06  E-value=2.9  Score=33.47  Aligned_cols=48  Identities=10%  Similarity=0.010  Sum_probs=36.9

Q ss_pred             CcceEEeeCCCHHHHHHHHh--cCcEEEecCCCccc----------------hhHHHHHHHHHcCC
Q psy12849         31 TNRTTVVNTINESSILIMAK--KCRVILNCVGPYTW----------------YGEAVVKACIEAKT   78 (138)
Q Consensus        31 ~~~~~~~D~~d~~~L~~~~~--~~dvVIn~~GPf~~----------------~~~~v~~Aci~~g~   78 (138)
                      ++.++..|+.|++++.++++  ++|+|||++|....                ....++++|.+.|+
T Consensus        51 ~~~~~~~Dl~d~~~~~~~~~~~~~d~vvh~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~  116 (338)
T PRK10675         51 HPTFVEGDIRNEALLTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANV  116 (338)
T ss_pred             CceEEEccCCCHHHHHHHHhcCCCCEEEECCccccccchhhCHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            56788999999999999987  58999999973221                11367888888875

>PRK05866 short chain dehydrogenase; Provisional

Probab=86.00  E-value=1.1  Score=35.91  Aligned_cols=32  Identities=6%  Similarity=0.116  Sum_probs=28.0

Q ss_pred             CcceEEeeCCCHHHHHHHHh-------cCcEEEecCCCc
Q psy12849         31 TNRTTVVNTINESSILIMAK-------KCRVILNCVGPY   62 (138)
Q Consensus        31 ~~~~~~~D~~d~~~L~~~~~-------~~dvVIn~~GPf   62 (138)
                      ++.++.+|+.|++++.++++       +.|++|||+|-.
T Consensus        90 ~~~~~~~Dl~d~~~v~~~~~~~~~~~g~id~li~~AG~~  128 (293)
T PRK05866         90 DAMAVPCDLSDLDAVDALVADVEKRIGGVDILINNAGRS  128 (293)
T ss_pred             cEEEEEccCCCHHHHHHHHHHHHHHcCCCCEEEECCCCC
Confidence            46788999999999999988       679999999854

>PLN02260 probable rhamnose biosynthetic enzyme

Probab=85.94  E-value=2  Score=38.46  Aligned_cols=48  Identities=6%  Similarity=0.040  Sum_probs=37.9

Q ss_pred             CCcceEEeeCCCHHHHHHHH--hcCcEEEecCCCccch----------------hHHHHHHHHHcC
Q psy12849         30 RTNRTTVVNTINESSILIMA--KKCRVILNCVGPYTWY----------------GEAVVKACIEAK   77 (138)
Q Consensus        30 ~~~~~~~~D~~d~~~L~~~~--~~~dvVIn~~GPf~~~----------------~~~v~~Aci~~g   77 (138)
                      .+++++..|+.|.+.+.+++  .++|+||||+++....                ...++++|.+.|
T Consensus        57 ~~v~~~~~Dl~d~~~~~~~~~~~~~D~ViHlAa~~~~~~~~~~~~~~~~~Nv~gt~~ll~a~~~~~  122 (668)
T PLN02260         57 PNFKFVKGDIASADLVNYLLITEGIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTG  122 (668)
T ss_pred             CCeEEEECCCCChHHHHHHHhhcCCCEEEECCCccCchhhhhCHHHHHHHHHHHHHHHHHHHHhcC
Confidence            46788999999999888776  5799999999975321                135789998877

>PRK12935 acetoacetyl-CoA reductase; Provisional

Probab=85.92  E-value=1.1  Score=34.22  Aligned_cols=33  Identities=6%  Similarity=0.060  Sum_probs=29.1

Q ss_pred             CcceEEeeCCCHHHHHHHHhc-------CcEEEecCCCcc
Q psy12849         31 TNRTTVVNTINESSILIMAKK-------CRVILNCVGPYT   63 (138)
Q Consensus        31 ~~~~~~~D~~d~~~L~~~~~~-------~dvVIn~~GPf~   63 (138)
                      ++.++.+|+.|++++.+++++       .|+||+|+|.+.
T Consensus        57 ~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~vi~~ag~~~   96 (247)
T PRK12935         57 DVYAVQADVSKVEDANRLVEEAVNHFGKVDILVNNAGITR   96 (247)
T ss_pred             eEEEEECCCCCHHHHHHHHHHHHHHcCCCCEEEECCCCCC
Confidence            578899999999999999987       599999999744

>PRK06180 short chain dehydrogenase; Provisional

Probab=85.82  E-value=1.8  Score=34.00  Aligned_cols=33  Identities=12%  Similarity=0.120  Sum_probs=28.5

Q ss_pred             CCcceEEeeCCCHHHHHHHHhc-------CcEEEecCCCc
Q psy12849         30 RTNRTTVVNTINESSILIMAKK-------CRVILNCVGPY   62 (138)
Q Consensus        30 ~~~~~~~~D~~d~~~L~~~~~~-------~dvVIn~~GPf   62 (138)
                      .++.++.+|+.|++++.+++++       .|+|||++|..
T Consensus        50 ~~~~~~~~D~~d~~~~~~~~~~~~~~~~~~d~vv~~ag~~   89 (277)
T PRK06180         50 DRALARLLDVTDFDAIDAVVADAEATFGPIDVLVNNAGYG   89 (277)
T ss_pred             CCeeEEEccCCCHHHHHHHHHHHHHHhCCCCEEEECCCcc
Confidence            4678899999999999988884       69999999974

>PLN02896 cinnamyl-alcohol dehydrogenase

Probab=85.82  E-value=1  Score=36.79  Aligned_cols=33  Identities=15%  Similarity=0.130  Sum_probs=29.8

Q ss_pred             CCcceEEeeCCCHHHHHHHHhcCcEEEecCCCc
Q psy12849         30 RTNRTTVVNTINESSILIMAKKCRVILNCVGPY   62 (138)
Q Consensus        30 ~~~~~~~~D~~d~~~L~~~~~~~dvVIn~~GPf   62 (138)
                      .++.++..|+.|.+++.+++++.|.|||++|+.
T Consensus        58 ~~~~~~~~Dl~~~~~~~~~~~~~d~Vih~A~~~   90 (353)
T PLN02896         58 DRLRLFRADLQEEGSFDEAVKGCDGVFHVAASM   90 (353)
T ss_pred             CeEEEEECCCCCHHHHHHHHcCCCEEEECCccc
Confidence            457889999999999999999999999999864

>PRK06123 short chain dehydrogenase; Provisional

Probab=85.80  E-value=1.4  Score=33.52  Aligned_cols=32  Identities=13%  Similarity=0.263  Sum_probs=27.8

Q ss_pred             CcceEEeeCCCHHHHHHHHh-------cCcEEEecCCCc
Q psy12849         31 TNRTTVVNTINESSILIMAK-------KCRVILNCVGPY   62 (138)
Q Consensus        31 ~~~~~~~D~~d~~~L~~~~~-------~~dvVIn~~GPf   62 (138)
                      ++.++.+|++|++++.++++       ..|++||++|..
T Consensus        53 ~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id~li~~ag~~   91 (248)
T PRK06123         53 EALAVAADVADEADVLRLFEAVDRELGRLDALVNNAGIL   91 (248)
T ss_pred             cEEEEEeccCCHHHHHHHHHHHHHHhCCCCEEEECCCCC
Confidence            46789999999999999887       469999999965

>TIGR02197 heptose_epim ADP-L-glycero-D-manno-heptose-6-epimerase

Probab=85.74  E-value=2.2  Score=33.61  Aligned_cols=50  Identities=12%  Similarity=0.013  Sum_probs=36.5

Q ss_pred             eEEeeCCCHHHHHHHHh----cCcEEEecCCCccch--------------hHHHHHHHHHcCCCeeeC
Q psy12849         34 TTVVNTINESSILIMAK----KCRVILNCVGPYTWY--------------GEAVVKACIEAKTHHVDI   83 (138)
Q Consensus        34 ~~~~D~~d~~~L~~~~~----~~dvVIn~~GPf~~~--------------~~~v~~Aci~~g~hYvDi   83 (138)
                      .+..|+++.+.+..+.+    +.|+||||+|+....              ...++++|.+.+++.|=+
T Consensus        45 ~~~~d~~~~~~~~~~~~~~~~~~D~vvh~A~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~v~~  112 (314)
T TIGR02197        45 VIADYIDKEDFLDRLEKGAFGKIEAIFHQGACSDTTETDGEYMMENNYQYSKRLLDWCAEKGIPFIYA  112 (314)
T ss_pred             eeeccCcchhHHHHHHhhccCCCCEEEECccccCccccchHHHHHHHHHHHHHHHHHHHHhCCcEEEE
Confidence            45668888888887775    799999999864211              135789999988876543

This family consists of examples of ADP-L-glycero-D-mannoheptose-6-epimerase, an enzyme involved in biosynthesis of the inner core of lipopolysaccharide (LPS) for Gram-negative bacteria. This enzyme is homologous to UDP-glucose 4-epimerase (TIGR01179) and belongs to the NAD dependent epimerase/dehydratase family (pfam01370).

>PRK07024 short chain dehydrogenase; Provisional

Probab=85.63  E-value=1.1  Score=34.65  Aligned_cols=32  Identities=9%  Similarity=0.085  Sum_probs=28.1

Q ss_pred             CcceEEeeCCCHHHHHHHHhc-------CcEEEecCCCc
Q psy12849         31 TNRTTVVNTINESSILIMAKK-------CRVILNCVGPY   62 (138)
Q Consensus        31 ~~~~~~~D~~d~~~L~~~~~~-------~dvVIn~~GPf   62 (138)
                      ++.++.+|++|++++.+++++       .|++||++|..
T Consensus        51 ~~~~~~~Dl~~~~~i~~~~~~~~~~~g~id~lv~~ag~~   89 (257)
T PRK07024         51 RVSVYAADVRDADALAAAAADFIAAHGLPDVVIANAGIS   89 (257)
T ss_pred             eeEEEEcCCCCHHHHHHHHHHHHHhCCCCCEEEECCCcC
Confidence            678999999999999888775       59999999964

>PRK07454 short chain dehydrogenase; Provisional

Probab=85.58  E-value=1.2  Score=33.80  Aligned_cols=34  Identities=15%  Similarity=0.063  Sum_probs=28.7

Q ss_pred             CCcceEEeeCCCHHHHHHHHhc-------CcEEEecCCCcc
Q psy12849         30 RTNRTTVVNTINESSILIMAKK-------CRVILNCVGPYT   63 (138)
Q Consensus        30 ~~~~~~~~D~~d~~~L~~~~~~-------~dvVIn~~GPf~   63 (138)
                      .++.++.+|++|++++.++++.       .|++||++|.+.
T Consensus        55 ~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~lv~~ag~~~   95 (241)
T PRK07454         55 VKAAAYSIDLSNPEAIAPGIAELLEQFGCPDVLINNAGMAY   95 (241)
T ss_pred             CcEEEEEccCCCHHHHHHHHHHHHHHcCCCCEEEECCCccC
Confidence            4678899999999998888774       799999999653

>PLN02583 cinnamoyl-CoA reductase

Probab=85.52  E-value=2.8  Score=33.50  Aligned_cols=47  Identities=26%  Similarity=0.447  Sum_probs=37.9

Q ss_pred             CCcceEEeeCCCHHHHHHHHhcCcEEEecCCCccch--------------hHHHHHHHHHc
Q psy12849         30 RTNRTTVVNTINESSILIMAKKCRVILNCVGPYTWY--------------GEAVVKACIEA   76 (138)
Q Consensus        30 ~~~~~~~~D~~d~~~L~~~~~~~dvVIn~~GPf~~~--------------~~~v~~Aci~~   76 (138)
                      .+++++..|+.|++++.+.+.+++.|+++++|....              ...++++|.+.
T Consensus        57 ~~~~~~~~Dl~d~~~~~~~l~~~d~v~~~~~~~~~~~~~~~~~~~~nv~gt~~ll~aa~~~  117 (297)
T PLN02583         57 ERLKVFDVDPLDYHSILDALKGCSGLFCCFDPPSDYPSYDEKMVDVEVRAAHNVLEACAQT  117 (297)
T ss_pred             CceEEEEecCCCHHHHHHHHcCCCEEEEeCccCCcccccHHHHHHHHHHHHHHHHHHHHhc
Confidence            357889999999999999999999999988765421              24678888875

>PRK12746 short chain dehydrogenase; Provisional

Probab=85.47  E-value=1.3  Score=33.87  Aligned_cols=33  Identities=6%  Similarity=0.020  Sum_probs=28.1

Q ss_pred             CCcceEEeeCCCHHHHHHHHh-------------cCcEEEecCCCc
Q psy12849         30 RTNRTTVVNTINESSILIMAK-------------KCRVILNCVGPY   62 (138)
Q Consensus        30 ~~~~~~~~D~~d~~~L~~~~~-------------~~dvVIn~~GPf   62 (138)
                      .++.++.+|+.|++++.++++             +.|++||++|..
T Consensus        56 ~~~~~~~~D~~d~~~i~~~~~~~~~~~~~~~~~~~id~vi~~ag~~  101 (254)
T PRK12746         56 GKAFLIEADLNSIDGVKKLVEQLKNELQIRVGTSEIDILVNNAGIG  101 (254)
T ss_pred             CcEEEEEcCcCCHHHHHHHHHHHHHHhccccCCCCccEEEECCCCC
Confidence            357789999999999988877             479999999864

>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional

Probab=85.43  E-value=6.2  Score=30.83  Aligned_cols=89  Identities=12%  Similarity=0.133  Sum_probs=57.9

Q ss_pred             hhhcCCCCcceEEeeCCCHHHH---HHHHhcC-cEEEecCCCccchhHHHHHHHHHcCCCeeeCCCChHHHHHHHHHhHH
Q psy12849         24 ASWFGVRTNRTTVVNTINESSI---LIMAKKC-RVILNCVGPYTWYGEAVVKACIEAKTHHVDITGEPYFMEYMQYEYNT   99 (138)
Q Consensus        24 a~~~~~~~~~~~~~D~~d~~~L---~~~~~~~-dvVIn~~GPf~~~~~~v~~Aci~~g~hYvDisge~~~~~~~~~~~~~   99 (138)
                      ++.+-...+..+.+..+.+..+   .++.+++ +++|-+-   +.....-++.|+++|.+|+=.-+   +..++.    +
T Consensus        22 a~al~~gGi~~iEit~~tp~a~~~I~~l~~~~~~~~vGAG---TVl~~e~a~~ai~aGA~FivSP~---~~~~vi----~   91 (201)
T PRK06015         22 ARALAAGGLPAIEITLRTPAALDAIRAVAAEVEEAIVGAG---TILNAKQFEDAAKAGSRFIVSPG---TTQELL----A   91 (201)
T ss_pred             HHHHHHCCCCEEEEeCCCccHHHHHHHHHHHCCCCEEeeE---eCcCHHHHHHHHHcCCCEEECCC---CCHHHH----H
Confidence            3333334567777777766544   3334344 4554433   44556779999999999986633   223333    5


Q ss_pred             HHHhCCCEEEeCCCCccchHhHHHHH
Q psy12849        100 RAQESEVCVVSACGIETLPIDMGVLM  125 (138)
Q Consensus       100 ~A~~~gv~iv~~~G~d~~p~dl~~~~  125 (138)
                      .|++.|+..+||+-   .|+++...+
T Consensus        92 ~a~~~~i~~iPG~~---TptEi~~A~  114 (201)
T PRK06015         92 AANDSDVPLLPGAA---TPSEVMALR  114 (201)
T ss_pred             HHHHcCCCEeCCCC---CHHHHHHHH
Confidence            58899999999998   888887653

>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional

Probab=85.36  E-value=1.4  Score=33.99  Aligned_cols=33  Identities=21%  Similarity=0.223  Sum_probs=28.7

Q ss_pred             CCcceEEeeCCCHHHHHHHHh-------cCcEEEecCCCc
Q psy12849         30 RTNRTTVVNTINESSILIMAK-------KCRVILNCVGPY   62 (138)
Q Consensus        30 ~~~~~~~~D~~d~~~L~~~~~-------~~dvVIn~~GPf   62 (138)
                      .++.++.+|+.+++++.++++       ..|++||++|..
T Consensus        63 ~~~~~~~~D~~~~~~i~~~~~~~~~~~g~id~li~~ag~~  102 (258)
T PRK06935         63 RKVTFVQVDLTKPESAEKVVKEALEEFGKIDILVNNAGTI  102 (258)
T ss_pred             CceEEEEcCCCCHHHHHHHHHHHHHHcCCCCEEEECCCCC
Confidence            467899999999999999888       469999999864

>PRK10206 putative oxidoreductase; Provisional

Probab=85.20  E-value=6.5  Score=32.54  Aligned_cols=75  Identities=11%  Similarity=-0.017  Sum_probs=49.4

Q ss_pred             HHHHHHh--cCcEEEecCCCccchhHHHHHHHHHcCCCeee---CCCChHHHHHHHHHhHHHHHhCCCEEEeCCCCccch
Q psy12849         44 SILIMAK--KCRVILNCVGPYTWYGEAVVKACIEAKTHHVD---ITGEPYFMEYMQYEYNTRAQESEVCVVSACGIETLP  118 (138)
Q Consensus        44 ~L~~~~~--~~dvVIn~~GPf~~~~~~v~~Aci~~g~hYvD---isge~~~~~~~~~~~~~~A~~~gv~iv~~~G~d~~p  118 (138)
                      ++.++++  +.|+|+-|. |-..+ ..++..|+++|.|.+=   ++-...-.+    ++-+.|+++|+.+..+.-.--.|
T Consensus        55 ~~~ell~~~~iD~V~I~t-p~~~H-~~~~~~al~aGkhVl~EKPla~~~~ea~----~l~~~a~~~~~~l~v~~~~R~~p  128 (344)
T PRK10206         55 DLDEVLNDPDVKLVVVCT-HADSH-FEYAKRALEAGKNVLVEKPFTPTLAEAK----ELFALAKSKGLTVTPYQNRRFDS  128 (344)
T ss_pred             CHHHHhcCCCCCEEEEeC-CchHH-HHHHHHHHHcCCcEEEecCCcCCHHHHH----HHHHHHHHhCCEEEEEEeeeECH
Confidence            3566675  579999999 65566 4789999999999863   333322233    33467888999987655444455


Q ss_pred             HhHHHH
Q psy12849        119 IDMGVL  124 (138)
Q Consensus       119 ~dl~~~  124 (138)
                      .-..+.
T Consensus       129 ~~~~~k  134 (344)
T PRK10206        129 CFLTAK  134 (344)
T ss_pred             HHHHHH
Confidence            444443

>PLN02653 GDP-mannose 4,6-dehydratase

Probab=85.03  E-value=1.3  Score=35.80  Aligned_cols=48  Identities=8%  Similarity=-0.095  Sum_probs=38.2

Q ss_pred             CcceEEeeCCCHHHHHHHHhc--CcEEEecCCCccc----------------hhHHHHHHHHHcCC
Q psy12849         31 TNRTTVVNTINESSILIMAKK--CRVILNCVGPYTW----------------YGEAVVKACIEAKT   78 (138)
Q Consensus        31 ~~~~~~~D~~d~~~L~~~~~~--~dvVIn~~GPf~~----------------~~~~v~~Aci~~g~   78 (138)
                      +++++.+|+.|.+++.+++++  .|+||||+|....                -...++++|.+.++
T Consensus        61 ~~~~~~~Dl~d~~~~~~~~~~~~~d~Vih~A~~~~~~~~~~~~~~~~~~N~~gt~~ll~~~~~~~~  126 (340)
T PLN02653         61 RMKLHYGDLSDASSLRRWLDDIKPDEVYNLAAQSHVAVSFEMPDYTADVVATGALRLLEAVRLHGQ  126 (340)
T ss_pred             ceEEEEecCCCHHHHHHHHHHcCCCEEEECCcccchhhhhhChhHHHHHHHHHHHHHHHHHHHhcc
Confidence            578899999999999999996  5999999986321                02467899988875

>PRK14851 hypothetical protein; Provisional

Probab=85.03  E-value=3.7  Score=37.59  Aligned_cols=53  Identities=8%  Similarity=0.077  Sum_probs=40.0

Q ss_pred             CcceEEeeCCCHHHHHHHHhcCcEEEecCCCccc-hhHHHHHHHHHcCCCeeeCC
Q psy12849         31 TNRTTVVNTINESSILIMAKKCRVILNCVGPYTW-YGEAVVKACIEAKTHHVDIT   84 (138)
Q Consensus        31 ~~~~~~~D~~d~~~L~~~~~~~dvVIn~~GPf~~-~~~~v~~Aci~~g~hYvDis   84 (138)
                      +++.+.-.+ +++.+..+++++|+||+|...|.. ....+.+.|.+.|+.+|..+
T Consensus       114 ~I~~~~~~i-~~~n~~~~l~~~DvVid~~D~~~~~~r~~l~~~c~~~~iP~i~~g  167 (679)
T PRK14851        114 EITPFPAGI-NADNMDAFLDGVDVVLDGLDFFQFEIRRTLFNMAREKGIPVITAG  167 (679)
T ss_pred             eEEEEecCC-ChHHHHHHHhCCCEEEECCCCCcHHHHHHHHHHHHHCCCCEEEee
Confidence            445554455 456789999999999999976532 23468889999999999753

>PRK06114 short chain dehydrogenase; Provisional

Probab=85.03  E-value=1.1  Score=34.58  Aligned_cols=32  Identities=6%  Similarity=0.115  Sum_probs=27.6

Q ss_pred             CcceEEeeCCCHHHHHHHHhc-------CcEEEecCCCc
Q psy12849         31 TNRTTVVNTINESSILIMAKK-------CRVILNCVGPY   62 (138)
Q Consensus        31 ~~~~~~~D~~d~~~L~~~~~~-------~dvVIn~~GPf   62 (138)
                      ++.++.+|+.|++++.+++++       .|++||++|..
T Consensus        59 ~~~~~~~D~~~~~~i~~~~~~~~~~~g~id~li~~ag~~   97 (254)
T PRK06114         59 RAIQIAADVTSKADLRAAVARTEAELGALTLAVNAAGIA   97 (254)
T ss_pred             ceEEEEcCCCCHHHHHHHHHHHHHHcCCCCEEEECCCCC
Confidence            567889999999999988876       49999999964

>PRK07890 short chain dehydrogenase; Provisional

Probab=84.92  E-value=1.1  Score=34.32  Aligned_cols=33  Identities=9%  Similarity=0.032  Sum_probs=28.0

Q ss_pred             CCcceEEeeCCCHHHHHHHHhc-------CcEEEecCCCc
Q psy12849         30 RTNRTTVVNTINESSILIMAKK-------CRVILNCVGPY   62 (138)
Q Consensus        30 ~~~~~~~~D~~d~~~L~~~~~~-------~dvVIn~~GPf   62 (138)
                      .++.++.+|+.|++++.++++.       .|++||++|+.
T Consensus        54 ~~~~~~~~D~~~~~~~~~~~~~~~~~~g~~d~vi~~ag~~   93 (258)
T PRK07890         54 RRALAVPTDITDEDQCANLVALALERFGRVDALVNNAFRV   93 (258)
T ss_pred             CceEEEecCCCCHHHHHHHHHHHHHHcCCccEEEECCccC
Confidence            3578999999999999888764       59999999864

>PRK06181 short chain dehydrogenase; Provisional

Probab=84.92  E-value=1.5  Score=33.78  Aligned_cols=33  Identities=6%  Similarity=0.055  Sum_probs=28.5

Q ss_pred             CcceEEeeCCCHHHHHHHHh-------cCcEEEecCCCcc
Q psy12849         31 TNRTTVVNTINESSILIMAK-------KCRVILNCVGPYT   63 (138)
Q Consensus        31 ~~~~~~~D~~d~~~L~~~~~-------~~dvVIn~~GPf~   63 (138)
                      ++.+..+|+.|++++.++++       +.|+||||+|+..
T Consensus        51 ~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id~vi~~ag~~~   90 (263)
T PRK06181         51 EALVVPTDVSDAEACERLIEAAVARFGGIDILVNNAGITM   90 (263)
T ss_pred             cEEEEEccCCCHHHHHHHHHHHHHHcCCCCEEEECCCccc
Confidence            57788999999999998887       4699999999754

>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1

Probab=84.91  E-value=1.1  Score=33.02  Aligned_cols=61  Identities=23%  Similarity=0.157  Sum_probs=30.0

Q ss_pred             HHHHHhcCcEEEecCCCccchhHHHHH-----HHHHcCCCeeeCCCChHHHHHHHHHhHHHHHhCCCEEE
Q psy12849         45 ILIMAKKCRVILNCVGPYTWYGEAVVK-----ACIEAKTHHVDITGEPYFMEYMQYEYNTRAQESEVCVV  109 (138)
Q Consensus        45 L~~~~~~~dvVIn~~GPf~~~~~~v~~-----Aci~~g~hYvDisge~~~~~~~~~~~~~~A~~~gv~iv  109 (138)
                      +.++++++|+|+.|+ |....-+.++.     ..+..|.-+||.+-..|-...   +..++.+++|+.++
T Consensus        51 ~~e~~~~~dvvi~~v-~~~~~v~~v~~~~~i~~~l~~g~iiid~sT~~p~~~~---~~~~~~~~~g~~~v  116 (163)
T PF03446_consen   51 PAEAAEQADVVILCV-PDDDAVEAVLFGENILAGLRPGKIIIDMSTISPETSR---ELAERLAAKGVRYV  116 (163)
T ss_dssp             HHHHHHHBSEEEE-S-SSHHHHHHHHHCTTHGGGS-TTEEEEE-SS--HHHHH---HHHHHHHHTTEEEE
T ss_pred             hhhHhhcccceEeec-ccchhhhhhhhhhHHhhccccceEEEecCCcchhhhh---hhhhhhhhccceee
Confidence            456667778888888 43322223322     223457788887655444321   33355556665544

1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....

>PRK07063 short chain dehydrogenase; Provisional

Probab=84.90  E-value=1.4  Score=34.03  Aligned_cols=33  Identities=12%  Similarity=0.115  Sum_probs=28.3

Q ss_pred             CCcceEEeeCCCHHHHHHHHh-------cCcEEEecCCCc
Q psy12849         30 RTNRTTVVNTINESSILIMAK-------KCRVILNCVGPY   62 (138)
Q Consensus        30 ~~~~~~~~D~~d~~~L~~~~~-------~~dvVIn~~GPf   62 (138)
                      .++.++.+|+.|++++.++++       +.|++||++|..
T Consensus        58 ~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~id~li~~ag~~   97 (260)
T PRK07063         58 ARVLAVPADVTDAASVAAAVAAAEEAFGPLDVLVNNAGIN   97 (260)
T ss_pred             ceEEEEEccCCCHHHHHHHHHHHHHHhCCCcEEEECCCcC
Confidence            357789999999999998887       479999999964

>PRK12937 short chain dehydrogenase; Provisional

Probab=84.90  E-value=1.3  Score=33.48  Aligned_cols=32  Identities=9%  Similarity=0.186  Sum_probs=28.0

Q ss_pred             CCcceEEeeCCCHHHHHHHHh-------cCcEEEecCCC
Q psy12849         30 RTNRTTVVNTINESSILIMAK-------KCRVILNCVGP   61 (138)
Q Consensus        30 ~~~~~~~~D~~d~~~L~~~~~-------~~dvVIn~~GP   61 (138)
                      .++.++.+|+.|++++.++++       +.|++||++|.
T Consensus        55 ~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id~vi~~ag~   93 (245)
T PRK12937         55 GRAIAVQADVADAAAVTRLFDAAETAFGRIDVLVNNAGV   93 (245)
T ss_pred             CeEEEEECCCCCHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence            467889999999999999888       47999999984

>PRK05876 short chain dehydrogenase; Provisional

Probab=84.80  E-value=1.6  Score=34.49  Aligned_cols=31  Identities=10%  Similarity=0.202  Sum_probs=27.0

Q ss_pred             CcceEEeeCCCHHHHHHHHhc-------CcEEEecCCC
Q psy12849         31 TNRTTVVNTINESSILIMAKK-------CRVILNCVGP   61 (138)
Q Consensus        31 ~~~~~~~D~~d~~~L~~~~~~-------~dvVIn~~GP   61 (138)
                      ++.++.+|+.|++++.+++++       .|++||++|.
T Consensus        56 ~~~~~~~Dv~d~~~v~~~~~~~~~~~g~id~li~nAg~   93 (275)
T PRK05876         56 DVHGVMCDVRHREEVTHLADEAFRLLGHVDVVFSNAGI   93 (275)
T ss_pred             eEEEEeCCCCCHHHHHHHHHHHHHHcCCCCEEEECCCc
Confidence            567889999999999988875       5999999984

>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2

Probab=84.75  E-value=1.1  Score=35.19  Aligned_cols=63  Identities=11%  Similarity=0.070  Sum_probs=41.3

Q ss_pred             HHHHHHhcCcEEEecCCCccchhHHHHHHHHHcCCCeeeCCCChHHHHHHHHHhHHHHHhCCCE-EEeCCCC
Q psy12849         44 SILIMAKKCRVILNCVGPYTWYGEAVVKACIEAKTHHVDITGEPYFMEYMQYEYNTRAQESEVC-VVSACGI  114 (138)
Q Consensus        44 ~L~~~~~~~dvVIn~~GPf~~~~~~v~~Aci~~g~hYvDisge~~~~~~~~~~~~~~A~~~gv~-iv~~~G~  114 (138)
                      ++.+.++++|++||+.+|.. +.+.+++...+..+.| |++ . |..    +.+-++|++.|.. +..|-++
T Consensus        90 ~l~~~l~~~dvlIgaT~~G~-~~~~~l~~m~~~~ivf-~ls-n-P~~----e~~~~~A~~~ga~i~a~G~~~  153 (226)
T cd05311          90 TLKEALKGADVFIGVSRPGV-VKKEMIKKMAKDPIVF-ALA-N-PVP----EIWPEEAKEAGADIVATGRSD  153 (226)
T ss_pred             CHHHHHhcCCEEEeCCCCCC-CCHHHHHhhCCCCEEE-EeC-C-CCC----cCCHHHHHHcCCcEEEeCCCC
Confidence            35567788999999998655 4456666655655666 776 3 332    2455778888884 6665443

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph

>PRK09135 pteridine reductase; Provisional

Probab=84.70  E-value=1.2  Score=33.69  Aligned_cols=32  Identities=3%  Similarity=0.108  Sum_probs=27.8

Q ss_pred             CCcceEEeeCCCHHHHHHHHhc-------CcEEEecCCC
Q psy12849         30 RTNRTTVVNTINESSILIMAKK-------CRVILNCVGP   61 (138)
Q Consensus        30 ~~~~~~~~D~~d~~~L~~~~~~-------~dvVIn~~GP   61 (138)
                      ..+.++.+|+.|++++.++++.       .|+||||+|.
T Consensus        57 ~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~~d~vi~~ag~   95 (249)
T PRK09135         57 GSAAALQADLLDPDALPELVAACVAAFGRLDALVNNASS   95 (249)
T ss_pred             CceEEEEcCCCCHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence            3578899999999999998885       6999999995

>PRK08223 hypothetical protein; Validated

Probab=84.69  E-value=3.2  Score=34.21  Aligned_cols=50  Identities=10%  Similarity=0.042  Sum_probs=36.0

Q ss_pred             cceEEeeCCCHHHHHHHHhcCcEEEecCCCcc-chhHHHHHHHHHcCCCeee
Q psy12849         32 NRTTVVNTINESSILIMAKKCRVILNCVGPYT-WYGEAVVKACIEAKTHHVD   82 (138)
Q Consensus        32 ~~~~~~D~~d~~~L~~~~~~~dvVIn~~GPf~-~~~~~v~~Aci~~g~hYvD   82 (138)
                      ++.+...+ +++.+.++++++|+||+|...|. ..-..+-++|.+.|+++|.
T Consensus        99 V~~~~~~l-~~~n~~~ll~~~DlVvD~~D~~~~~~r~~ln~~c~~~~iP~V~  149 (287)
T PRK08223         99 IRAFPEGI-GKENADAFLDGVDVYVDGLDFFEFDARRLVFAACQQRGIPALT  149 (287)
T ss_pred             EEEEeccc-CccCHHHHHhCCCEEEECCCCCcHHHHHHHHHHHHHcCCCEEE
Confidence            34343334 34557889999999999997552 2335688999999999877

>TIGR02130 dapB_plant dihydrodipicolinate reductase

Probab=84.68  E-value=1.7  Score=35.70  Aligned_cols=81  Identities=12%  Similarity=0.016  Sum_probs=49.2

Q ss_pred             HHHHHHHhc-Cc-EEEecCCCccchhHHHHHHHHHcCCCeee-CCCChHHHHHHHHHhHHHHHhCCCEEEeCCCCccchH
Q psy12849         43 SSILIMAKK-CR-VILNCVGPYTWYGEAVVKACIEAKTHHVD-ITGEPYFMEYMQYEYNTRAQESEVCVVSACGIETLPI  119 (138)
Q Consensus        43 ~~L~~~~~~-~d-vVIn~~GPf~~~~~~v~~Aci~~g~hYvD-isge~~~~~~~~~~~~~~A~~~gv~iv~~~G~d~~p~  119 (138)
                      ..|..++.. +| |+|+-.-|-...  ..++.|++.|+++|= +||-   .++-..++   ++++++.++.+--|.-+.-
T Consensus        59 ~~l~~~~~~~~d~VvIDFT~P~~~~--~n~~~~~~~gv~~ViGTTG~---~~~~~~~l---~~~~~i~~l~apNfSiGv~  130 (275)
T TIGR02130        59 ARIGEVFAKYPELICIDYTHPSAVN--DNAAFYGKHGIPFVMGTTGG---DREALAKL---VADAKHPAVIAPNMAKQIV  130 (275)
T ss_pred             ccHHHHHhhcCCEEEEECCChHHHH--HHHHHHHHCCCCEEEcCCCC---CHHHHHHH---HHhcCCCEEEECcccHHHH
Confidence            456777776 89 999999886654  579999999999975 4553   33212233   3334455555555533333


Q ss_pred             hHHH--HHHHHHhh
Q psy12849        120 DMGV--LMLQDSFE  131 (138)
Q Consensus       120 dl~~--~~~~~~~~  131 (138)
                      .+..  ..+++.|.
T Consensus       131 ll~~~~~~aA~~~~  144 (275)
T TIGR02130       131 AFLAAIEFLAEEFP  144 (275)
T ss_pred             HHHHHHHHHHHhhc
Confidence            2222  35555554

This narrow family includes genes from Arabidopsis and Fibrobacter succinogenes (which probably recieved the gene from a plant via lateral gene transfer). The sequences are distantly related to the dihydrodipicolinate reductases from archaea. In Fibrobacter this gene is the only candidate DHPR in the genome.

>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB

Probab=84.65  E-value=4.7  Score=31.99  Aligned_cols=42  Identities=12%  Similarity=0.332  Sum_probs=34.9

Q ss_pred             CHHHHHHHHhcCcEEEecCCCccchhHHHHHHHHHcCCCeeeC
Q psy12849         41 NESSILIMAKKCRVILNCVGPYTWYGEAVVKACIEAKTHHVDI   83 (138)
Q Consensus        41 d~~~L~~~~~~~dvVIn~~GPf~~~~~~v~~Aci~~g~hYvDi   83 (138)
                      +++.+.++++++|+||.|...+.. -..+-++|.+.|+++|.-
T Consensus       104 ~~~~~~~~~~~~DlVvd~~D~~~~-r~~ln~~~~~~~ip~v~~  145 (240)
T TIGR02355       104 DDAELAALIAEHDIVVDCTDNVEV-RNQLNRQCFAAKVPLVSG  145 (240)
T ss_pred             CHHHHHHHhhcCCEEEEcCCCHHH-HHHHHHHHHHcCCCEEEE
Confidence            456788899999999999987653 356789999999999974

This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).

>TIGR02415 23BDH acetoin reductases

Probab=84.50  E-value=1.1  Score=34.17  Aligned_cols=32  Identities=9%  Similarity=0.171  Sum_probs=27.2

Q ss_pred             CcceEEeeCCCHHHHHHHHhc-------CcEEEecCCCc
Q psy12849         31 TNRTTVVNTINESSILIMAKK-------CRVILNCVGPY   62 (138)
Q Consensus        31 ~~~~~~~D~~d~~~L~~~~~~-------~dvVIn~~GPf   62 (138)
                      ++.++.+|+.|++++.++++.       .|+|||++|..
T Consensus        50 ~~~~~~~Dl~~~~~i~~~~~~~~~~~~~id~vi~~ag~~   88 (254)
T TIGR02415        50 KAVAYKLDVSDKDQVFSAIDQAAEKFGGFDVMVNNAGVA   88 (254)
T ss_pred             eEEEEEcCCCCHHHHHHHHHHHHHHcCCCCEEEECCCcC
Confidence            578899999999999888764       59999999864

One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733).

>PRK06398 aldose dehydrogenase; Validated

Probab=84.49  E-value=1.4  Score=34.18  Aligned_cols=31  Identities=13%  Similarity=0.174  Sum_probs=26.8

Q ss_pred             CcceEEeeCCCHHHHHHHHh-------cCcEEEecCCC
Q psy12849         31 TNRTTVVNTINESSILIMAK-------KCRVILNCVGP   61 (138)
Q Consensus        31 ~~~~~~~D~~d~~~L~~~~~-------~~dvVIn~~GP   61 (138)
                      ++.++.+|+.|++++.++++       +.|++||++|.
T Consensus        45 ~~~~~~~D~~~~~~i~~~~~~~~~~~~~id~li~~Ag~   82 (258)
T PRK06398         45 DVDYFKVDVSNKEQVIKGIDYVISKYGRIDILVNNAGI   82 (258)
T ss_pred             ceEEEEccCCCHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence            57789999999999988887       47999999984

>PRK12550 shikimate 5-dehydrogenase; Reviewed

Probab=84.42  E-value=1.2  Score=36.20  Aligned_cols=73  Identities=19%  Similarity=0.193  Sum_probs=47.6

Q ss_pred             hcCcEEEecCCCccchh------HHHHHHHHHcCCCeeeCCCChHHHHHHHHHhHHHHHhCCCEEEeCCCCccchHhHHH
Q psy12849         50 KKCRVILNCVGPYTWYG------EAVVKACIEAKTHHVDITGEPYFMEYMQYEYNTRAQESEVCVVSACGIETLPIDMGV  123 (138)
Q Consensus        50 ~~~dvVIn~~GPf~~~~------~~v~~Aci~~g~hYvDisge~~~~~~~~~~~~~~A~~~gv~iv~~~G~d~~p~dl~~  123 (138)
                      .++|+||||. |-.-.+      .++-...+..+.-.+|+...|.-+     .|-.+|+++|..++.|.+       |+.
T Consensus       177 ~~~dlvINaT-p~Gm~~~~~~~~~pi~~~~l~~~~~v~D~vY~P~~T-----~ll~~A~~~G~~~i~Gl~-------MLi  243 (272)
T PRK12550        177 IEADILVNVT-PIGMAGGPEADKLAFPEAEIDAASVVFDVVALPAET-----PLIRYARARGKTVITGAE-------VIA  243 (272)
T ss_pred             ccCCEEEECC-ccccCCCCccccCCCCHHHcCCCCEEEEeecCCccC-----HHHHHHHHCcCeEeCCHH-------HHH
Confidence            4589999998 543221      134345566777789998876443     344678999999987655       555


Q ss_pred             HHHHHHhhhhcC
Q psy12849        124 LMLQDSFEGHSG  135 (138)
Q Consensus       124 ~~~~~~~~~~~~  135 (138)
                      +.++.+|+-=++
T Consensus       244 ~Qa~~~f~lwtg  255 (272)
T PRK12550        244 LQAVEQFVLYTG  255 (272)
T ss_pred             HHHHHHHHHHhC
Confidence            666665554333

>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed

Probab=84.36  E-value=1.6  Score=33.10  Aligned_cols=33  Identities=9%  Similarity=0.265  Sum_probs=28.8

Q ss_pred             CcceEEeeCCCHHHHHHHHh-------cCcEEEecCCCcc
Q psy12849         31 TNRTTVVNTINESSILIMAK-------KCRVILNCVGPYT   63 (138)
Q Consensus        31 ~~~~~~~D~~d~~~L~~~~~-------~~dvVIn~~GPf~   63 (138)
                      ++.++.+|+.|++++.++++       ++|+||+++|.+.
T Consensus        56 ~~~~~~~Dl~~~~~~~~~~~~~~~~~~~~d~vi~~ag~~~   95 (251)
T PRK12826         56 KARARQVDVRDRAALKAAVAAGVEDFGRLDILVANAGIFP   95 (251)
T ss_pred             eEEEEECCCCCHHHHHHHHHHHHHHhCCCCEEEECCCCCC
Confidence            47889999999999999887       5799999998754

>PRK08265 short chain dehydrogenase; Provisional

Probab=84.31  E-value=1.2  Score=34.57  Aligned_cols=33  Identities=12%  Similarity=0.240  Sum_probs=28.0

Q ss_pred             CCcceEEeeCCCHHHHHHHHhc-------CcEEEecCCCc
Q psy12849         30 RTNRTTVVNTINESSILIMAKK-------CRVILNCVGPY   62 (138)
Q Consensus        30 ~~~~~~~~D~~d~~~L~~~~~~-------~dvVIn~~GPf   62 (138)
                      .++.++++|+.|++++.+++++       .|++||++|.+
T Consensus        52 ~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~id~lv~~ag~~   91 (261)
T PRK08265         52 ERARFIATDITDDAAIERAVATVVARFGRVDILVNLACTY   91 (261)
T ss_pred             CeeEEEEecCCCHHHHHHHHHHHHHHhCCCCEEEECCCCC
Confidence            3577899999999999888874       59999999954

>PRK07677 short chain dehydrogenase; Provisional

Probab=84.29  E-value=1.3  Score=34.11  Aligned_cols=33  Identities=12%  Similarity=0.117  Sum_probs=27.7

Q ss_pred             CCcceEEeeCCCHHHHHHHHhc-------CcEEEecCCCc
Q psy12849         30 RTNRTTVVNTINESSILIMAKK-------CRVILNCVGPY   62 (138)
Q Consensus        30 ~~~~~~~~D~~d~~~L~~~~~~-------~dvVIn~~GPf   62 (138)
                      .++.++.+|+.|++++.+++.+       .|++||++|..
T Consensus        50 ~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~lI~~ag~~   89 (252)
T PRK07677         50 GQVLTVQMDVRNPEDVQKMVEQIDEKFGRIDALINNAAGN   89 (252)
T ss_pred             CcEEEEEecCCCHHHHHHHHHHHHHHhCCccEEEECCCCC
Confidence            4678899999999999887764       59999999854

>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=84.29  E-value=1.5  Score=33.10  Aligned_cols=33  Identities=12%  Similarity=0.166  Sum_probs=28.8

Q ss_pred             CCcceEEeeCCCHHHHHHHHh-------cCcEEEecCCCc
Q psy12849         30 RTNRTTVVNTINESSILIMAK-------KCRVILNCVGPY   62 (138)
Q Consensus        30 ~~~~~~~~D~~d~~~L~~~~~-------~~dvVIn~~GPf   62 (138)
                      .++.++.+|+.|++++.++++       +.|+||+++|+.
T Consensus        55 ~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~vi~~ag~~   94 (247)
T PRK05565         55 GDAIAVKADVSSEEDVENLVEQIVEKFGKIDILVNNAGIS   94 (247)
T ss_pred             CeEEEEECCCCCHHHHHHHHHHHHHHhCCCCEEEECCCcC
Confidence            357889999999999988887       689999999975

>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional

Probab=84.27  E-value=4.2  Score=33.96  Aligned_cols=51  Identities=6%  Similarity=0.013  Sum_probs=39.5

Q ss_pred             CcceEEeeCCCHHHHHHHHhcCcEEEecCCCccchhHHHHHHHHHcCCCeeeC
Q psy12849         31 TNRTTVVNTINESSILIMAKKCRVILNCVGPYTWYGEAVVKACIEAKTHHVDI   83 (138)
Q Consensus        31 ~~~~~~~D~~d~~~L~~~~~~~dvVIn~~GPf~~~~~~v~~Aci~~g~hYvDi   83 (138)
                      +++.+..+++ ++.+.++++++|+||.|...|.. -.-+-+.|.+.|+++|-.
T Consensus        97 ~i~~~~~~~~-~~~~~~~~~~~DlVid~~D~~~~-r~~in~~~~~~~ip~i~~  147 (338)
T PRK12475         97 EIVPVVTDVT-VEELEELVKEVDLIIDATDNFDT-RLLINDLSQKYNIPWIYG  147 (338)
T ss_pred             EEEEEeccCC-HHHHHHHhcCCCEEEEcCCCHHH-HHHHHHHHHHcCCCEEEE
Confidence            3455555663 56788999999999999987753 356779999999998864

>PRK06947 glucose-1-dehydrogenase; Provisional

Probab=84.27  E-value=1.7  Score=33.08  Aligned_cols=33  Identities=15%  Similarity=0.221  Sum_probs=27.8

Q ss_pred             CCcceEEeeCCCHHHHHHHHh-------cCcEEEecCCCc
Q psy12849         30 RTNRTTVVNTINESSILIMAK-------KCRVILNCVGPY   62 (138)
Q Consensus        30 ~~~~~~~~D~~d~~~L~~~~~-------~~dvVIn~~GPf   62 (138)
                      .++.++.+|+.|++++.++++       +.|++|+++|..
T Consensus        52 ~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id~li~~ag~~   91 (248)
T PRK06947         52 GRACVVAGDVANEADVIAMFDAVQSAFGRLDALVNNAGIV   91 (248)
T ss_pred             CcEEEEEeccCCHHHHHHHHHHHHHhcCCCCEEEECCccC
Confidence            367899999999999887775       479999999964

>PRK09997 hydroxypyruvate isomerase; Provisional

Probab=84.18  E-value=12  Score=29.24  Aligned_cols=94  Identities=7%  Similarity=-0.014  Sum_probs=60.1

Q ss_pred             HHHHHhhhhcCCCCcceEEeeCCCHHHHHHHHhcCcEEEecCC-Cccc--------------------hhHHHHHHHHHc
Q psy12849         18 FLFLQKASWFGVRTNRTTVVNTINESSILIMAKKCRVILNCVG-PYTW--------------------YGEAVVKACIEA   76 (138)
Q Consensus        18 ~~~~~~a~~~~~~~~~~~~~D~~d~~~L~~~~~~~dvVIn~~G-Pf~~--------------------~~~~v~~Aci~~   76 (138)
                      -..++++.+.|-+.+++..-.-.+.+++.+++++..+-+...+ |+..                    .-.+.++.|.+.
T Consensus        18 ~~~l~~~a~~Gf~~VEl~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~l   97 (258)
T PRK09997         18 LARFEKAAQCGFRGVEFMFPYDYDIEELKQVLASNKLEHTLHNLPAGDWAAGERGIACIPGREEEFRDGVAAAIRYARAL   97 (258)
T ss_pred             HHHHHHHHHhCCCEEEEcCCCCCCHHHHHHHHHHcCCcEEEEcCCCCccccCcCccccCCCcHHHHHHHHHHHHHHHHHh
Confidence            3457778888877777544333588999999998877775322 3211                    125677888899


Q ss_pred             CCCeeeC-CCC-------hH---HHHHHHHHhHHHHHhCCCEEEeC
Q psy12849         77 KTHHVDI-TGE-------PY---FMEYMQYEYNTRAQESEVCVVSA  111 (138)
Q Consensus        77 g~hYvDi-sge-------~~---~~~~~~~~~~~~A~~~gv~iv~~  111 (138)
                      |+.+|=+ .|.       ..   ...+...+..+.|++.|+.+...
T Consensus        98 ga~~i~~~~g~~~~~~~~~~~~~~~~~~l~~l~~~a~~~Gv~l~lE  143 (258)
T PRK09997         98 GNKKINCLVGKTPAGFSSEQIHATLVENLRYAANMLMKEDILLLIE  143 (258)
T ss_pred             CCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCEEEEE
Confidence            9999754 232       11   11122235556678899988775

>PRK05597 molybdopterin biosynthesis protein MoeB; Validated

Probab=84.17  E-value=4.7  Score=33.76  Aligned_cols=50  Identities=18%  Similarity=0.045  Sum_probs=37.0

Q ss_pred             CcceEEeeCCCHHHHHHHHhcCcEEEecCCCccchhHHHHHHHHHcCCCeee
Q psy12849         31 TNRTTVVNTINESSILIMAKKCRVILNCVGPYTWYGEAVVKACIEAKTHHVD   82 (138)
Q Consensus        31 ~~~~~~~D~~d~~~L~~~~~~~dvVIn~~GPf~~~~~~v~~Aci~~g~hYvD   82 (138)
                      +++.....+ +++.+.++++++|+||+|..-|.. -.-+-++|.+.++++|-
T Consensus        99 ~v~~~~~~i-~~~~~~~~~~~~DvVvd~~d~~~~-r~~~n~~c~~~~ip~v~  148 (355)
T PRK05597         99 KVTVSVRRL-TWSNALDELRDADVILDGSDNFDT-RHLASWAAARLGIPHVW  148 (355)
T ss_pred             EEEEEEeec-CHHHHHHHHhCCCEEEECCCCHHH-HHHHHHHHHHcCCCEEE
Confidence            344444444 356677899999999999976543 24578999999999986

>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated

Probab=83.98  E-value=4.7  Score=33.65  Aligned_cols=51  Identities=8%  Similarity=0.027  Sum_probs=39.2

Q ss_pred             CcceEEeeCCCHHHHHHHHhcCcEEEecCCCccchhHHHHHHHHHcCCCeeeC
Q psy12849         31 TNRTTVVNTINESSILIMAKKCRVILNCVGPYTWYGEAVVKACIEAKTHHVDI   83 (138)
Q Consensus        31 ~~~~~~~D~~d~~~L~~~~~~~dvVIn~~GPf~~~~~~v~~Aci~~g~hYvDi   83 (138)
                      +++....++ +++.+.++++++|+||.|..-|. .-.-+-++|.+.|+++|-.
T Consensus        97 ~v~~~~~~~-~~~~~~~~~~~~DlVid~~Dn~~-~r~~ln~~~~~~~iP~i~~  147 (339)
T PRK07688         97 RVEAIVQDV-TAEELEELVTGVDLIIDATDNFE-TRFIVNDAAQKYGIPWIYG  147 (339)
T ss_pred             EEEEEeccC-CHHHHHHHHcCCCEEEEcCCCHH-HHHHHHHHHHHhCCCEEEE
Confidence            345555565 45678889999999999998664 3457889999999999864

>PRK07370 enoyl-(acyl carrier protein) reductase; Validated

Probab=83.97  E-value=1.7  Score=33.91  Aligned_cols=32  Identities=6%  Similarity=0.125  Sum_probs=26.7

Q ss_pred             CcceEEeeCCCHHHHHHHHhc-------CcEEEecCCCc
Q psy12849         31 TNRTTVVNTINESSILIMAKK-------CRVILNCVGPY   62 (138)
Q Consensus        31 ~~~~~~~D~~d~~~L~~~~~~-------~dvVIn~~GPf   62 (138)
                      +..++++|+.|++++.++++.       .|++||++|..
T Consensus        60 ~~~~~~~Dl~d~~~v~~~~~~~~~~~g~iD~lv~nag~~   98 (258)
T PRK07370         60 PSLFLPCDVQDDAQIEETFETIKQKWGKLDILVHCLAFA   98 (258)
T ss_pred             cceEeecCcCCHHHHHHHHHHHHHHcCCCCEEEEccccc
Confidence            456889999999999888764       59999999843

>PRK12939 short chain dehydrogenase; Provisional

Probab=83.90  E-value=1.6  Score=33.09  Aligned_cols=33  Identities=9%  Similarity=0.062  Sum_probs=28.1

Q ss_pred             CCcceEEeeCCCHHHHHHHHh-------cCcEEEecCCCc
Q psy12849         30 RTNRTTVVNTINESSILIMAK-------KCRVILNCVGPY   62 (138)
Q Consensus        30 ~~~~~~~~D~~d~~~L~~~~~-------~~dvVIn~~GPf   62 (138)
                      .++.++++|+.|++++.++++       +.|++||++|..
T Consensus        56 ~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id~vi~~ag~~   95 (250)
T PRK12939         56 GRAHAIAADLADPASVQRFFDAAAAALGGLDGLVNNAGIT   95 (250)
T ss_pred             CcEEEEEccCCCHHHHHHHHHHHHHHcCCCCEEEECCCCC
Confidence            367889999999999988885       479999999863

>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=83.89  E-value=1.1  Score=33.96  Aligned_cols=32  Identities=9%  Similarity=0.190  Sum_probs=27.8

Q ss_pred             CcceEEeeCCCHHHHHHHHhc-------CcEEEecCCCc
Q psy12849         31 TNRTTVVNTINESSILIMAKK-------CRVILNCVGPY   62 (138)
Q Consensus        31 ~~~~~~~D~~d~~~L~~~~~~-------~dvVIn~~GPf   62 (138)
                      ++.++.+|+.|++++.+++++       .|+||+++|..
T Consensus        54 ~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d~vi~~ag~~   92 (251)
T PRK07231         54 RAIAVAADVSDEADVEAAVAAALERFGSVDILVNNAGTT   92 (251)
T ss_pred             eEEEEECCCCCHHHHHHHHHHHHHHhCCCCEEEECCCCC
Confidence            477999999999999998875       49999999863

>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=83.78  E-value=1.2  Score=33.45  Aligned_cols=31  Identities=10%  Similarity=0.269  Sum_probs=27.0

Q ss_pred             CCcceEEeeCCCHHHHHHHHhc-------CcEEEecCC
Q psy12849         30 RTNRTTVVNTINESSILIMAKK-------CRVILNCVG   60 (138)
Q Consensus        30 ~~~~~~~~D~~d~~~L~~~~~~-------~dvVIn~~G   60 (138)
                      .++.++.+|+.|++++.+++++       .|+|||++|
T Consensus        56 ~~~~~~~~D~~~~~~v~~~~~~~~~~~~~id~vi~~ag   93 (249)
T PRK12825         56 RRAQAVQADVTDKAALEAAVAAAVERFGRIDILVNNAG   93 (249)
T ss_pred             CceEEEECCcCCHHHHHHHHHHHHHHcCCCCEEEECCc
Confidence            3578899999999999988864       599999998

>PRK12320 hypothetical protein; Provisional

Probab=83.74  E-value=2.7  Score=38.69  Aligned_cols=54  Identities=11%  Similarity=-0.003  Sum_probs=41.5

Q ss_pred             CCcceEEeeCCCHHHHHHHHhcCcEEEecCCCccc-------h-hHHHHHHHHHcCCCeeeCC
Q psy12849         30 RTNRTTVVNTINESSILIMAKKCRVILNCVGPYTW-------Y-GEAVVKACIEAKTHHVDIT   84 (138)
Q Consensus        30 ~~~~~~~~D~~d~~~L~~~~~~~dvVIn~~GPf~~-------~-~~~v~~Aci~~g~hYvDis   84 (138)
                      ..++++..|+.|+. +.+.++++|+|||++++...       . ...++++|.+.|+..|=+|
T Consensus        40 ~~ve~v~~Dl~d~~-l~~al~~~D~VIHLAa~~~~~~~~vNv~Gt~nLleAA~~~GvRiV~~S  101 (699)
T PRK12320         40 PRVDYVCASLRNPV-LQELAGEADAVIHLAPVDTSAPGGVGITGLAHVANAAARAGARLLFVS  101 (699)
T ss_pred             CCceEEEccCCCHH-HHHHhcCCCEEEEcCccCccchhhHHHHHHHHHHHHHHHcCCeEEEEE
Confidence            35788999999984 88889999999999975321       1 2468899999987766544

>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional

Probab=83.61  E-value=1.7  Score=33.12  Aligned_cols=32  Identities=19%  Similarity=0.116  Sum_probs=27.7

Q ss_pred             CCcceEEeeCCCHHHHHHHHhc-------CcEEEecCCC
Q psy12849         30 RTNRTTVVNTINESSILIMAKK-------CRVILNCVGP   61 (138)
Q Consensus        30 ~~~~~~~~D~~d~~~L~~~~~~-------~dvVIn~~GP   61 (138)
                      .++.++.+|+.|++++.+++++       .|+|||++|+
T Consensus        54 ~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~vi~~ag~   92 (250)
T PRK08063         54 RKALAVKANVGDVEKIKEMFAQIDEEFGRLDVFVNNAAS   92 (250)
T ss_pred             CeEEEEEcCCCCHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence            3578899999999999988874       6999999985

>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated

Probab=83.56  E-value=1.4  Score=33.98  Aligned_cols=32  Identities=9%  Similarity=0.114  Sum_probs=27.6

Q ss_pred             CcceEEeeCCCHHHHHHHHhc-------CcEEEecCCCc
Q psy12849         31 TNRTTVVNTINESSILIMAKK-------CRVILNCVGPY   62 (138)
Q Consensus        31 ~~~~~~~D~~d~~~L~~~~~~-------~dvVIn~~GPf   62 (138)
                      ++..+++|+.|++++.+++++       .|++||++|..
T Consensus        58 ~~~~~~~Dl~~~~~~~~~~~~~~~~~~~~D~li~~Ag~~   96 (253)
T PRK08993         58 RFLSLTADLRKIDGIPALLERAVAEFGHIDILVNNAGLI   96 (253)
T ss_pred             eEEEEECCCCCHHHHHHHHHHHHHHhCCCCEEEECCCCC
Confidence            567889999999999988874       79999999853

>PRK06172 short chain dehydrogenase; Provisional

Probab=83.48  E-value=1.3  Score=33.88  Aligned_cols=33  Identities=6%  Similarity=0.090  Sum_probs=28.2

Q ss_pred             CCcceEEeeCCCHHHHHHHHhcC-------cEEEecCCCc
Q psy12849         30 RTNRTTVVNTINESSILIMAKKC-------RVILNCVGPY   62 (138)
Q Consensus        30 ~~~~~~~~D~~d~~~L~~~~~~~-------dvVIn~~GPf   62 (138)
                      .++.++.+|+.|++++.++++++       |++||++|..
T Consensus        56 ~~~~~~~~D~~~~~~i~~~~~~~~~~~g~id~li~~ag~~   95 (253)
T PRK06172         56 GEALFVACDVTRDAEVKALVEQTIAAYGRLDYAFNNAGIE   95 (253)
T ss_pred             CceEEEEcCCCCHHHHHHHHHHHHHHhCCCCEEEECCCCC
Confidence            35788999999999999988764       9999999853

>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase

Probab=83.48  E-value=1.5  Score=34.00  Aligned_cols=33  Identities=3%  Similarity=-0.067  Sum_probs=27.4

Q ss_pred             CCcceEEeeCCCHHHHHHHHhc-------CcEEEecCCCc
Q psy12849         30 RTNRTTVVNTINESSILIMAKK-------CRVILNCVGPY   62 (138)
Q Consensus        30 ~~~~~~~~D~~d~~~L~~~~~~-------~dvVIn~~GPf   62 (138)
                      .++.++.+|+.|++++.+++++       .|++||++|.+
T Consensus        51 ~~~~~~~~D~~~~~~~~~~~~~~~~~~g~id~li~~Ag~~   90 (262)
T TIGR03325        51 DAVVGVEGDVRSLDDHKEAVARCVAAFGKIDCLIPNAGIW   90 (262)
T ss_pred             CceEEEEeccCCHHHHHHHHHHHHHHhCCCCEEEECCCCC
Confidence            3577899999999988887764       59999999864

Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.

>PRK07877 hypothetical protein; Provisional

Probab=83.48  E-value=4.9  Score=37.14  Aligned_cols=54  Identities=7%  Similarity=-0.036  Sum_probs=41.0

Q ss_pred             CcceEEeeCCCHHHHHHHHhcCcEEEecCCCccchhHHHHHHHHHcCCCeeeCCCC
Q psy12849         31 TNRTTVVNTINESSILIMAKKCRVILNCVGPYTWYGEAVVKACIEAKTHHVDITGE   86 (138)
Q Consensus        31 ~~~~~~~D~~d~~~L~~~~~~~dvVIn~~GPf~~~~~~v~~Aci~~g~hYvDisge   86 (138)
                      +++.+...+ +++.+.++++++|+||+|..=| ..-.-+-++|.+.|.++|--++.
T Consensus       177 ~v~~~~~~i-~~~n~~~~l~~~DlVvD~~D~~-~~R~~ln~~a~~~~iP~i~~~~~  230 (722)
T PRK07877        177 PVEVFTDGL-TEDNVDAFLDGLDVVVEECDSL-DVKVLLREAARARRIPVLMATSD  230 (722)
T ss_pred             EEEEEeccC-CHHHHHHHhcCCCEEEECCCCH-HHHHHHHHHHHHcCCCEEEEcCC
Confidence            445555555 4788999999999999999644 33456789999999998876653

>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form

Probab=83.46  E-value=1.4  Score=36.76  Aligned_cols=40  Identities=13%  Similarity=0.220  Sum_probs=32.5

Q ss_pred             HHHhcCcEEEecCCCccchhHHHHHHHHHcCCCeeeCCCChH
Q psy12849         47 IMAKKCRVILNCVGPYTWYGEAVVKACIEAKTHHVDITGEPY   88 (138)
Q Consensus        47 ~~~~~~dvVIn~~GPf~~~~~~v~~Aci~~g~hYvDisge~~   88 (138)
                      ++.+++|+|+-|+ |... ...++..++++|++.||+|++.-
T Consensus        64 ~~~~~~DvVf~al-P~~~-s~~~~~~~~~~G~~VIDlS~~fR  103 (346)
T TIGR01850        64 EIAEDADVVFLAL-PHGV-SAELAPELLAAGVKVIDLSADFR  103 (346)
T ss_pred             HhhcCCCEEEECC-CchH-HHHHHHHHHhCCCEEEeCChhhh
Confidence            4446899999999 6554 46888999999999999998743

This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.

>PRK06392 homoserine dehydrogenase; Provisional

Probab=83.45  E-value=6.6  Score=32.74  Aligned_cols=61  Identities=10%  Similarity=-0.025  Sum_probs=44.3

Q ss_pred             hcCcEEEecCCCccc--hhHHHHHHHHHcCCCeeeCCCChHHHHHHHHHhHHHHHhCCCEEEeCC
Q psy12849         50 KKCRVILNCVGPYTW--YGEAVVKACIEAKTHHVDITGEPYFMEYMQYEYNTRAQESEVCVVSAC  112 (138)
Q Consensus        50 ~~~dvVIn~~GPf~~--~~~~v~~Aci~~g~hYvDisge~~~~~~~~~~~~~~A~~~gv~iv~~~  112 (138)
                      ..+|+||.|++....  .+....+.+++.|.|.|-.+= .+....+ .++.+.|+++|+.+...+
T Consensus        80 ~~~DVvVE~t~~~~~g~~~~~~~~~aL~~G~hVVTaNK-galA~~~-~eL~~lA~~~g~~~~~ea  142 (326)
T PRK06392         80 IKPDVIVDVTPASKDGIREKNLYINAFEHGIDVVTANK-SGLANHW-HDIMDSASKNRRIIRYEA  142 (326)
T ss_pred             CCCCEEEECCCCCCcCchHHHHHHHHHHCCCEEEcCCH-HHHHhhH-HHHHHHHHHcCCeEEEee
Confidence            368999999953321  134566899999999998853 3443333 578889999999999654

>PRK12744 short chain dehydrogenase; Provisional

Probab=83.44  E-value=3.2  Score=31.96  Aligned_cols=31  Identities=10%  Similarity=0.154  Sum_probs=27.2

Q ss_pred             CcceEEeeCCCHHHHHHHHh-------cCcEEEecCCC
Q psy12849         31 TNRTTVVNTINESSILIMAK-------KCRVILNCVGP   61 (138)
Q Consensus        31 ~~~~~~~D~~d~~~L~~~~~-------~~dvVIn~~GP   61 (138)
                      ++.++++|+.|++++.++++       +.|++||++|.
T Consensus        62 ~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~li~~ag~   99 (257)
T PRK12744         62 KAVAFQADLTTAAAVEKLFDDAKAAFGRPDIAINTVGK   99 (257)
T ss_pred             cEEEEecCcCCHHHHHHHHHHHHHhhCCCCEEEECCcc
Confidence            57889999999999998887       46999999995

>PRK12367 short chain dehydrogenase; Provisional

Probab=83.34  E-value=1.6  Score=34.27  Aligned_cols=30  Identities=13%  Similarity=-0.087  Sum_probs=27.0

Q ss_pred             ceEEeeCCCHHHHHHHHhcCcEEEecCCCc
Q psy12849         33 RTTVVNTINESSILIMAKKCRVILNCVGPY   62 (138)
Q Consensus        33 ~~~~~D~~d~~~L~~~~~~~dvVIn~~GPf   62 (138)
                      .++.+|++|.+++.+.+.+.|++||++|..
T Consensus        61 ~~~~~D~~~~~~~~~~~~~iDilVnnAG~~   90 (245)
T PRK12367         61 EWIKWECGKEESLDKQLASLDVLILNHGIN   90 (245)
T ss_pred             eEEEeeCCCHHHHHHhcCCCCEEEECCccC
Confidence            578899999999999999999999999853

>PRK07814 short chain dehydrogenase; Provisional

Probab=83.33  E-value=1.9  Score=33.50  Aligned_cols=32  Identities=16%  Similarity=0.254  Sum_probs=27.4

Q ss_pred             CCcceEEeeCCCHHHHHHHHh-------cCcEEEecCCC
Q psy12849         30 RTNRTTVVNTINESSILIMAK-------KCRVILNCVGP   61 (138)
Q Consensus        30 ~~~~~~~~D~~d~~~L~~~~~-------~~dvVIn~~GP   61 (138)
                      .++.++.+|+.|++++.++++       +.|+|||++|.
T Consensus        59 ~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~vi~~Ag~   97 (263)
T PRK07814         59 RRAHVVAADLAHPEATAGLAGQAVEAFGRLDIVVNNVGG   97 (263)
T ss_pred             CcEEEEEccCCCHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence            357889999999999988776       56999999985

>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating)

Probab=83.18  E-value=6.3  Score=31.88  Aligned_cols=33  Identities=18%  Similarity=0.132  Sum_probs=21.1

Q ss_pred             hcCcEEEecCCCccchhHHHHHHHHHcCCCeee
Q psy12849         50 KKCRVILNCVGPYTWYGEAVVKACIEAKTHHVD   82 (138)
Q Consensus        50 ~~~dvVIn~~GPf~~~~~~v~~Aci~~g~hYvD   82 (138)
                      +.-++||+|............+.+.+.|.||+|
T Consensus        84 ~~g~ivid~st~~~~~t~~~~~~~~~~g~~~vd  116 (298)
T TIGR00872        84 EKGDIVIDGGNSYYKDSLRRYKLLKEKGIHLLD  116 (298)
T ss_pred             CCCCEEEECCCCCcccHHHHHHHHHhcCCeEEe
Confidence            334677777665544445566666677777777

This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.

>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional

Probab=83.18  E-value=1.5  Score=33.89  Aligned_cols=32  Identities=3%  Similarity=-0.061  Sum_probs=27.5

Q ss_pred             CcceEEeeCCCHHHHHHHHhc-------CcEEEecCCCc
Q psy12849         31 TNRTTVVNTINESSILIMAKK-------CRVILNCVGPY   62 (138)
Q Consensus        31 ~~~~~~~D~~d~~~L~~~~~~-------~dvVIn~~GPf   62 (138)
                      ++.++++|+.|++++.+++++       .|++||++|++
T Consensus        53 ~~~~~~~D~~~~~~~~~~~~~~~~~~g~id~li~~ag~~   91 (263)
T PRK06200         53 HVLVVEGDVTSYADNQRAVDQTVDAFGKLDCFVGNAGIW   91 (263)
T ss_pred             cceEEEccCCCHHHHHHHHHHHHHhcCCCCEEEECCCCc
Confidence            577899999999999888764       69999999964

>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional

Probab=83.15  E-value=1.6  Score=33.80  Aligned_cols=33  Identities=9%  Similarity=0.024  Sum_probs=27.7

Q ss_pred             CCcceEEeeCCCHHHHHHHHhc-------CcEEEecCCCc
Q psy12849         30 RTNRTTVVNTINESSILIMAKK-------CRVILNCVGPY   62 (138)
Q Consensus        30 ~~~~~~~~D~~d~~~L~~~~~~-------~dvVIn~~GPf   62 (138)
                      .++.++.+|+.|++++.++++.       .|++||++|.+
T Consensus        59 ~~~~~~~~D~~~~~~~~~~~~~~~~~~g~id~lv~nAg~~   98 (260)
T PRK08416         59 IKAKAYPLNILEPETYKELFKKIDEDFDRVDFFISNAIIS   98 (260)
T ss_pred             CceEEEEcCCCCHHHHHHHHHHHHHhcCCccEEEECcccc
Confidence            3678999999999999888874       69999999853

>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional

Probab=83.14  E-value=1.9  Score=33.45  Aligned_cols=33  Identities=9%  Similarity=0.014  Sum_probs=27.0

Q ss_pred             CCcceEEeeCCCHHHHHHHHhc-------CcEEEecCCCc
Q psy12849         30 RTNRTTVVNTINESSILIMAKK-------CRVILNCVGPY   62 (138)
Q Consensus        30 ~~~~~~~~D~~d~~~L~~~~~~-------~dvVIn~~GPf   62 (138)
                      .++.++++|+.|++++.++++.       .|++||++|..
T Consensus        55 ~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~iD~lv~nAg~~   94 (252)
T PRK06079         55 EEDLLVECDVASDESIERAFATIKERVGKIDGIVHAIAYA   94 (252)
T ss_pred             CceeEEeCCCCCHHHHHHHHHHHHHHhCCCCEEEEccccc
Confidence            3567899999999998887653       69999999854

>PRK12829 short chain dehydrogenase; Provisional

Probab=83.04  E-value=2  Score=32.91  Aligned_cols=32  Identities=16%  Similarity=0.162  Sum_probs=27.6

Q ss_pred             CcceEEeeCCCHHHHHHHHh-------cCcEEEecCCCc
Q psy12849         31 TNRTTVVNTINESSILIMAK-------KCRVILNCVGPY   62 (138)
Q Consensus        31 ~~~~~~~D~~d~~~L~~~~~-------~~dvVIn~~GPf   62 (138)
                      ++.++.+|+.|++++.++++       ++|+||+++|+.
T Consensus        59 ~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d~vi~~ag~~   97 (264)
T PRK12829         59 KVTATVADVADPAQVERVFDTAVERFGGLDVLVNNAGIA   97 (264)
T ss_pred             ceEEEEccCCCHHHHHHHHHHHHHHhCCCCEEEECCCCC
Confidence            56889999999999988776       579999999965

>PRK05650 short chain dehydrogenase; Provisional

Probab=82.95  E-value=2  Score=33.42  Aligned_cols=33  Identities=18%  Similarity=0.131  Sum_probs=28.2

Q ss_pred             CCcceEEeeCCCHHHHHHHHh-------cCcEEEecCCCc
Q psy12849         30 RTNRTTVVNTINESSILIMAK-------KCRVILNCVGPY   62 (138)
Q Consensus        30 ~~~~~~~~D~~d~~~L~~~~~-------~~dvVIn~~GPf   62 (138)
                      .++.++++|+.|++++.++++       +.|++||++|+.
T Consensus        49 ~~~~~~~~D~~~~~~~~~~~~~i~~~~~~id~lI~~ag~~   88 (270)
T PRK05650         49 GDGFYQRCDVRDYSQLTALAQACEEKWGGIDVIVNNAGVA   88 (270)
T ss_pred             CceEEEEccCCCHHHHHHHHHHHHHHcCCCCEEEECCCCC
Confidence            357789999999999988886       579999999964

>PTZ00325 malate dehydrogenase; Provisional

Probab=82.95  E-value=7.7  Score=32.25  Aligned_cols=31  Identities=13%  Similarity=0.112  Sum_probs=24.2

Q ss_pred             eEEeeCCCHHHHHHHHhcCcEEEecCCCccc
Q psy12849         34 TTVVNTINESSILIMAKKCRVILNCVGPYTW   64 (138)
Q Consensus        34 ~~~~D~~d~~~L~~~~~~~dvVIn~~GPf~~   64 (138)
                      +...+.+|+.+..+.++++|+||.|+|+...
T Consensus        59 ~~v~~~td~~~~~~~l~gaDvVVitaG~~~~   89 (321)
T PTZ00325         59 AKVTGYADGELWEKALRGADLVLICAGVPRK   89 (321)
T ss_pred             ceEEEecCCCchHHHhCCCCEEEECCCCCCC
Confidence            4455666666667899999999999998655

>PRK10538 malonic semialdehyde reductase; Provisional

Probab=82.82  E-value=2.1  Score=32.91  Aligned_cols=31  Identities=19%  Similarity=0.187  Sum_probs=27.1

Q ss_pred             CcceEEeeCCCHHHHHHHHh-------cCcEEEecCCC
Q psy12849         31 TNRTTVVNTINESSILIMAK-------KCRVILNCVGP   61 (138)
Q Consensus        31 ~~~~~~~D~~d~~~L~~~~~-------~~dvVIn~~GP   61 (138)
                      ++.++.+|+.|++++.++++       +.|+|||++|.
T Consensus        47 ~~~~~~~Dl~~~~~i~~~~~~~~~~~~~id~vi~~ag~   84 (248)
T PRK10538         47 NLYIAQLDVRNRAAIEEMLASLPAEWRNIDVLVNNAGL   84 (248)
T ss_pred             ceEEEEecCCCHHHHHHHHHHHHHHcCCCCEEEECCCc
Confidence            57889999999999988776       58999999984

>PRK12428 3-alpha-hydroxysteroid dehydrogenase; Provisional

Probab=82.78  E-value=1.2  Score=34.34  Aligned_cols=31  Identities=13%  Similarity=0.048  Sum_probs=26.8

Q ss_pred             cceEEeeCCCHHHHHHHHhc----CcEEEecCCCc
Q psy12849         32 NRTTVVNTINESSILIMAKK----CRVILNCVGPY   62 (138)
Q Consensus        32 ~~~~~~D~~d~~~L~~~~~~----~dvVIn~~GPf   62 (138)
                      ..++++|+.|.+++.+++++    .|++||++|.+
T Consensus        25 ~~~~~~Dl~~~~~v~~~~~~~~~~iD~li~nAG~~   59 (241)
T PRK12428         25 DGFIQADLGDPASIDAAVAALPGRIDALFNIAGVP   59 (241)
T ss_pred             hHhhcccCCCHHHHHHHHHHhcCCCeEEEECCCCC
Confidence            35789999999999999984    79999999964

>PRK07062 short chain dehydrogenase; Provisional

Probab=82.75  E-value=1.4  Score=34.07  Aligned_cols=31  Identities=13%  Similarity=0.269  Sum_probs=26.4

Q ss_pred             CcceEEeeCCCHHHHHHHHhc-------CcEEEecCCC
Q psy12849         31 TNRTTVVNTINESSILIMAKK-------CRVILNCVGP   61 (138)
Q Consensus        31 ~~~~~~~D~~d~~~L~~~~~~-------~dvVIn~~GP   61 (138)
                      ++.++.+|+.|++++.+++++       .|++||++|.
T Consensus        60 ~~~~~~~D~~~~~~v~~~~~~~~~~~g~id~li~~Ag~   97 (265)
T PRK07062         60 RLLAARCDVLDEADVAAFAAAVEARFGGVDMLVNNAGQ   97 (265)
T ss_pred             eEEEEEecCCCHHHHHHHHHHHHHhcCCCCEEEECCCC
Confidence            567889999999999887764       5999999985

>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4

Probab=82.73  E-value=5.9  Score=30.79  Aligned_cols=83  Identities=13%  Similarity=0.123  Sum_probs=52.7

Q ss_pred             CCcceEEeeCCCHHHHHH---HHhc-CcEEEecCCCccchhHHHHHHHHHcCCCeeeCCCChHHHHHHHHHhHHHHHhCC
Q psy12849         30 RTNRTTVVNTINESSILI---MAKK-CRVILNCVGPYTWYGEAVVKACIEAKTHHVDITGEPYFMEYMQYEYNTRAQESE  105 (138)
Q Consensus        30 ~~~~~~~~D~~d~~~L~~---~~~~-~dvVIn~~GPf~~~~~~v~~Aci~~g~hYvDisge~~~~~~~~~~~~~~A~~~g  105 (138)
                      ..+..+.+..+.+..+..   +.++ -+++|-+.   +.....-++.|+++|..|+=.-+   +..++.    +.+++.|
T Consensus        32 gGi~~iEiT~~t~~a~~~I~~l~~~~p~~~vGAG---TV~~~e~a~~a~~aGA~FivSP~---~~~~v~----~~~~~~~  101 (196)
T PF01081_consen   32 GGIRAIEITLRTPNALEAIEALRKEFPDLLVGAG---TVLTAEQAEAAIAAGAQFIVSPG---FDPEVI----EYAREYG  101 (196)
T ss_dssp             TT--EEEEETTSTTHHHHHHHHHHHHTTSEEEEE---S--SHHHHHHHHHHT-SEEEESS-----HHHH----HHHHHHT
T ss_pred             CCCCEEEEecCCccHHHHHHHHHHHCCCCeeEEE---eccCHHHHHHHHHcCCCEEECCC---CCHHHH----HHHHHcC
Confidence            467778887776644332   2223 36666444   44556789999999999986633   333333    5688899


Q ss_pred             CEEEeCCCCccchHhHHHHH
Q psy12849        106 VCVVSACGIETLPIDMGVLM  125 (138)
Q Consensus       106 v~iv~~~G~d~~p~dl~~~~  125 (138)
                      +..+||+-   .|+++...+
T Consensus       102 i~~iPG~~---TptEi~~A~  118 (196)
T PF01081_consen  102 IPYIPGVM---TPTEIMQAL  118 (196)
T ss_dssp             SEEEEEES---SHHHHHHHH
T ss_pred             CcccCCcC---CHHHHHHHH
Confidence            99999998   898887643

1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....

>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional

Probab=82.73  E-value=2.1  Score=33.05  Aligned_cols=33  Identities=15%  Similarity=0.230  Sum_probs=28.3

Q ss_pred             CCcceEEeeCCCHHHHHHHHhc-------CcEEEecCCCc
Q psy12849         30 RTNRTTVVNTINESSILIMAKK-------CRVILNCVGPY   62 (138)
Q Consensus        30 ~~~~~~~~D~~d~~~L~~~~~~-------~dvVIn~~GPf   62 (138)
                      .++.++.+|+.|++++.++++.       .|++||++|.+
T Consensus        55 ~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~iD~lv~~ag~~   94 (251)
T PRK12481         55 RKFHFITADLIQQKDIDSIVSQAVEVMGHIDILINNAGII   94 (251)
T ss_pred             CeEEEEEeCCCCHHHHHHHHHHHHHHcCCCCEEEECCCcC
Confidence            3578899999999999998874       69999999854

>PRK08628 short chain dehydrogenase; Provisional

Probab=82.67  E-value=1.9  Score=33.04  Aligned_cols=32  Identities=9%  Similarity=0.088  Sum_probs=27.7

Q ss_pred             CCcceEEeeCCCHHHHHHHHh-------cCcEEEecCCC
Q psy12849         30 RTNRTTVVNTINESSILIMAK-------KCRVILNCVGP   61 (138)
Q Consensus        30 ~~~~~~~~D~~d~~~L~~~~~-------~~dvVIn~~GP   61 (138)
                      .++.++.+|+.+++++.++++       +.|+|||++|-
T Consensus        55 ~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~vi~~ag~   93 (258)
T PRK08628         55 PRAEFVQVDLTDDAQCRDAVEQTVAKFGRIDGLVNNAGV   93 (258)
T ss_pred             CceEEEEccCCCHHHHHHHHHHHHHhcCCCCEEEECCcc
Confidence            357899999999999998887       46999999994

>PRK06194 hypothetical protein; Provisional

Probab=82.56  E-value=1.5  Score=34.24  Aligned_cols=32  Identities=9%  Similarity=0.119  Sum_probs=28.0

Q ss_pred             CcceEEeeCCCHHHHHHHHhc-------CcEEEecCCCc
Q psy12849         31 TNRTTVVNTINESSILIMAKK-------CRVILNCVGPY   62 (138)
Q Consensus        31 ~~~~~~~D~~d~~~L~~~~~~-------~dvVIn~~GPf   62 (138)
                      ++.++.+|+.|++++.+++++       .|+|||++|..
T Consensus        56 ~~~~~~~D~~d~~~~~~~~~~~~~~~g~id~vi~~Ag~~   94 (287)
T PRK06194         56 EVLGVRTDVSDAAQVEALADAALERFGAVHLLFNNAGVG   94 (287)
T ss_pred             eEEEEECCCCCHHHHHHHHHHHHHHcCCCCEEEECCCCC
Confidence            567799999999999999885       69999999864

>PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=82.51  E-value=1.6  Score=33.39  Aligned_cols=32  Identities=13%  Similarity=0.022  Sum_probs=27.4

Q ss_pred             CCcceEEeeCCCHHHHHHHHh-------cCcEEEecCCC
Q psy12849         30 RTNRTTVVNTINESSILIMAK-------KCRVILNCVGP   61 (138)
Q Consensus        30 ~~~~~~~~D~~d~~~L~~~~~-------~~dvVIn~~GP   61 (138)
                      .++.++.+|+.|++++.++++       ..|++|||+|.
T Consensus        52 ~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~vi~~ag~   90 (256)
T PRK12745         52 VEVIFFPADVADLSAHEAMLDAAQAAWGRIDCLVNNAGV   90 (256)
T ss_pred             CceEEEEecCCCHHHHHHHHHHHHHhcCCCCEEEECCcc
Confidence            367899999999999988877       45999999984

>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional

Probab=82.49  E-value=2.2  Score=32.43  Aligned_cols=33  Identities=12%  Similarity=0.131  Sum_probs=28.3

Q ss_pred             CCcceEEeeCCCHHHHHHHHh-------cCcEEEecCCCc
Q psy12849         30 RTNRTTVVNTINESSILIMAK-------KCRVILNCVGPY   62 (138)
Q Consensus        30 ~~~~~~~~D~~d~~~L~~~~~-------~~dvVIn~~GPf   62 (138)
                      .++.++.+|+.|++++.++++       +.|+||+++|..
T Consensus        53 ~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~~d~vi~~a~~~   92 (258)
T PRK12429         53 GKAIGVAMDVTDEEAINAGIDYAVETFGGVDILVNNAGIQ   92 (258)
T ss_pred             CcEEEEEcCCCCHHHHHHHHHHHHHHcCCCCEEEECCCCC
Confidence            467889999999999999888       479999999853

>PF00809 Pterin_bind: Pterin binding enzyme This Prosite entry is a subset of the Pfam family; InterPro: IPR000489 The ~250-residue pterin-binding domain has been shown to adopt a (beta/alpha)8 barrel fold, which has the overall shape of a distorted cylinder

Probab=82.49  E-value=14  Score=28.49  Aligned_cols=80  Identities=14%  Similarity=0.139  Sum_probs=55.0

Q ss_pred             ceEEeeCCCHHHHHHHHh-cCcEEEecCCCccchhHHHHHHHHHcCCCeeeCCCC--h-----------HHHHHHHHHhH
Q psy12849         33 RTTVVNTINESSILIMAK-KCRVILNCVGPYTWYGEAVVKACIEAKTHHVDITGE--P-----------YFMEYMQYEYN   98 (138)
Q Consensus        33 ~~~~~D~~d~~~L~~~~~-~~dvVIn~~GPf~~~~~~v~~Aci~~g~hYvDisge--~-----------~~~~~~~~~~~   98 (138)
                      -.+.+|..+++.+.+.++ +.++++|..| +.. -+.+++.+.+.|+.||=+.-.  +           ....++...+.
T Consensus        73 ~plSIDT~~~~v~~~aL~~g~~~ind~~~-~~~-~~~~~~l~a~~~~~vV~m~~~~~~~~~~~~~~~~~~~~~~i~~~~~  150 (210)
T PF00809_consen   73 VPLSIDTFNPEVAEAALKAGADIINDISG-FED-DPEMLPLAAEYGAPVVLMHSDGNPKGMPETADYRLDIAEEIIEFLE  150 (210)
T ss_dssp             SEEEEEESSHHHHHHHHHHTSSEEEETTT-TSS-STTHHHHHHHHTSEEEEESESSETTTTTSSHHHSHSHHHHHHHHHH
T ss_pred             eEEEEECCCHHHHHHHHHcCcceEEeccc-ccc-cchhhhhhhcCCCEEEEEecccccccccccchhhhhHHHHHHHHHH
Confidence            368899999999988877 6899988887 322 357899999999999865444  2           34455554444


Q ss_pred             HH---HHhCCC-----EEEeCCCC
Q psy12849         99 TR---AQESEV-----CVVSACGI  114 (138)
Q Consensus        99 ~~---A~~~gv-----~iv~~~G~  114 (138)
                      ++   +.+.|+     .+=|+.||
T Consensus       151 ~~i~~l~~~Gi~~~~Ii~DPgigf  174 (210)
T PF00809_consen  151 ERIEALEKAGIPRERIILDPGIGF  174 (210)
T ss_dssp             HHHHHHHHTT--GGGEEEETTTTS
T ss_pred             HHHHHHHHcCCCHHHEeeccccCc
Confidence            42   444677     44466666

It has eight alpha-helices stacked around the outside of an inner cylinder of parallel beta-strands. The pterin ring binds at the bottom of the (beta/alpha;)8 barrel in a polar cup-like region that is relatively solvent exposed and fairly negatively charged. The pterin ring is partially buried within the (beta/alpha)8 barrel. The pterin binding residues are highly conserved and include aspartate and asparagine residues located at the C terminus of the beta-strands of the barrel, which are predicted to form hydrogen bonds with the nitrogen and oxygen atoms of the pterin ring [, , ]. Some proteins known to contain a pterin-binding domain are listed below: Prokaryotic and eukaryotic B12-dependent methionine synthase (MetH) (2.1.1.13 from EC), a large, modular protein that catalyzes the transfer of a methyl group from methyltetrahydrofolate (CH3-H4folate) to Hcy to form methionine, using cobalamin as an intermediate methyl carrier. Prokaryotic and eukaryotic dihydropteroate synthase (DHPS) (2.5.1.15 from EC). It catalyzes the condensation of para-aminobenzoic acid (pABA) with 7,8- dihydropterin-pyrophosphate (DHPPP), eliminating pyrophosphate to form 7,8- dihydropteroate which is subsequently converted to tetrahydrofolate. Moorella thermoacetica 5-methyltetrahydrofolate corrinoid/iron sulphur protein methyltransferase (MeTr). It transfers the N5-methyl group from CH3-H4folate to a cob(I)amide centre in another protein, the corrinoid iron sulphur protein. ; GO: 0042558 pteridine-containing compound metabolic process; PDB: 2VP8_B 2BMB_A 2Y5S_B 2Y5J_A 3BOF_B 1Q7Q_B 1Q85_B 1Q7Z_A 1Q7M_A 1Q8A_B ....

>PRK08340 glucose-1-dehydrogenase; Provisional

Probab=82.46  E-value=2  Score=33.20  Aligned_cols=32  Identities=6%  Similarity=0.043  Sum_probs=27.4

Q ss_pred             CcceEEeeCCCHHHHHHHHh-------cCcEEEecCCCc
Q psy12849         31 TNRTTVVNTINESSILIMAK-------KCRVILNCVGPY   62 (138)
Q Consensus        31 ~~~~~~~D~~d~~~L~~~~~-------~~dvVIn~~GPf   62 (138)
                      ++.++++|+.|++++.++++       ..|++||++|..
T Consensus        49 ~~~~~~~Dv~d~~~~~~~~~~~~~~~g~id~li~naG~~   87 (259)
T PRK08340         49 EVYAVKADLSDKDDLKNLVKEAWELLGGIDALVWNAGNV   87 (259)
T ss_pred             CceEEEcCCCCHHHHHHHHHHHHHhcCCCCEEEECCCCC
Confidence            57789999999999998886       469999999953

>PRK07774 short chain dehydrogenase; Provisional

Probab=82.43  E-value=2  Score=32.65  Aligned_cols=31  Identities=19%  Similarity=0.127  Sum_probs=26.7

Q ss_pred             CcceEEeeCCCHHHHHHHHh-------cCcEEEecCCC
Q psy12849         31 TNRTTVVNTINESSILIMAK-------KCRVILNCVGP   61 (138)
Q Consensus        31 ~~~~~~~D~~d~~~L~~~~~-------~~dvVIn~~GP   61 (138)
                      ++.++.+|+.|++++.++++       ..|+|||++|.
T Consensus        56 ~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id~vi~~ag~   93 (250)
T PRK07774         56 TAIAVQVDVSDPDSAKAMADATVSAFGGIDYLVNNAAI   93 (250)
T ss_pred             cEEEEEcCCCCHHHHHHHHHHHHHHhCCCCEEEECCCC
Confidence            56788999999999988877       46999999984

>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]

Probab=82.39  E-value=10  Score=30.35  Aligned_cols=75  Identities=13%  Similarity=0.055  Sum_probs=50.6

Q ss_pred             HHHHHHhc--CcEEEecCCCccchhHHHHHHHHHcCCCeee---CCCChHHHHHHHHHhHHHHHhCCCEEEeCCCCccch
Q psy12849         44 SILIMAKK--CRVILNCVGPYTWYGEAVVKACIEAKTHHVD---ITGEPYFMEYMQYEYNTRAQESEVCVVSACGIETLP  118 (138)
Q Consensus        44 ~L~~~~~~--~dvVIn~~GPf~~~~~~v~~Aci~~g~hYvD---isge~~~~~~~~~~~~~~A~~~gv~iv~~~G~d~~p  118 (138)
                      ++.++++.  .|+|+-|. |-..+. .++.+|+++|.|-+=   ++-...=.+    ++-+.|+++|+.+..+--+--.|
T Consensus        58 ~~~~ll~~~~iD~V~Iat-p~~~H~-e~~~~AL~aGkhVl~EKPla~t~~ea~----~l~~~a~~~~~~l~v~~~~Rf~p  131 (342)
T COG0673          58 DLEELLADPDIDAVYIAT-PNALHA-ELALAALEAGKHVLCEKPLALTLEEAE----ELVELARKAGVKLMVGFNRRFDP  131 (342)
T ss_pred             CHHHHhcCCCCCEEEEcC-CChhhH-HHHHHHHhcCCEEEEcCCCCCCHHHHH----HHHHHHHHcCCceeeehhhhcCH
Confidence            36667775  69999999 666664 678999999999763   333322222    44477888899887776555555


Q ss_pred             HhHHHH
Q psy12849        119 IDMGVL  124 (138)
Q Consensus       119 ~dl~~~  124 (138)
                      .-.-+.
T Consensus       132 ~~~~~k  137 (342)
T COG0673         132 AVQALK  137 (342)
T ss_pred             HHHHHH
Confidence            544443

>PRK12827 short chain dehydrogenase; Provisional

Probab=82.39  E-value=2.2  Score=32.19  Aligned_cols=34  Identities=9%  Similarity=0.048  Sum_probs=28.8

Q ss_pred             CCcceEEeeCCCHHHHHHHHh-------cCcEEEecCCCcc
Q psy12849         30 RTNRTTVVNTINESSILIMAK-------KCRVILNCVGPYT   63 (138)
Q Consensus        30 ~~~~~~~~D~~d~~~L~~~~~-------~~dvVIn~~GPf~   63 (138)
                      .++.++.+|+.|++++.++++       +.|.||+++|+..
T Consensus        59 ~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~~d~vi~~ag~~~   99 (249)
T PRK12827         59 GKALGLAFDVRDFAATRAALDAGVEEFGRLDILVNNAGIAT   99 (249)
T ss_pred             CcEEEEEccCCCHHHHHHHHHHHHHHhCCCCEEEECCCCCC
Confidence            467899999999999988875       4799999999754

>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like

Probab=82.32  E-value=7.7  Score=29.70  Aligned_cols=42  Identities=14%  Similarity=0.220  Sum_probs=34.2

Q ss_pred             HHHHHHHHhcCcEEEecCCCccchhHHHHHHHHHcCCCeeeCC
Q psy12849         42 ESSILIMAKKCRVILNCVGPYTWYGEAVVKACIEAKTHHVDIT   84 (138)
Q Consensus        42 ~~~L~~~~~~~dvVIn~~GPf~~~~~~v~~Aci~~g~hYvDis   84 (138)
                      .+....+++++|+||.|..|+. .-..+-+.|.+.++++|..+
T Consensus       104 ~~~~~~~~~~~dvVi~~~d~~~-~~~~ln~~c~~~~ip~i~~~  145 (198)
T cd01485         104 DSNIEEYLQKFTLVIATEENYE-RTAKVNDVCRKHHIPFISCA  145 (198)
T ss_pred             hhhHHHHHhCCCEEEECCCCHH-HHHHHHHHHHHcCCCEEEEE
Confidence            4557788999999999998854 33568899999999999863

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol

>PRK07478 short chain dehydrogenase; Provisional

Probab=82.20  E-value=2.1  Score=32.84  Aligned_cols=33  Identities=9%  Similarity=0.068  Sum_probs=27.9

Q ss_pred             CCcceEEeeCCCHHHHHHHHh-------cCcEEEecCCCc
Q psy12849         30 RTNRTTVVNTINESSILIMAK-------KCRVILNCVGPY   62 (138)
Q Consensus        30 ~~~~~~~~D~~d~~~L~~~~~-------~~dvVIn~~GPf   62 (138)
                      .++.++.+|+.|++++.++++       ..|++||++|..
T Consensus        55 ~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~li~~ag~~   94 (254)
T PRK07478         55 GEAVALAGDVRDEAYAKALVALAVERFGGLDIAFNNAGTL   94 (254)
T ss_pred             CcEEEEEcCCCCHHHHHHHHHHHHHhcCCCCEEEECCCCC
Confidence            357789999999999998887       469999999853

>cd03315 MLE_like Muconate lactonizing enzyme (MLE) like subgroup of the enolase superfamily

Probab=82.18  E-value=23  Score=27.94  Aligned_cols=95  Identities=9%  Similarity=-0.076  Sum_probs=57.3

Q ss_pred             CcceEEe--eCCCHHHHHHHHhcCcEEEecCCCccchhHHHHHHHHHc-CCCeeeC--C--CChHHHHHHHHHhHHHHHh
Q psy12849         31 TNRTTVV--NTINESSILIMAKKCRVILNCVGPYTWYGEAVVKACIEA-KTHHVDI--T--GEPYFMEYMQYEYNTRAQE  103 (138)
Q Consensus        31 ~~~~~~~--D~~d~~~L~~~~~~~dvVIn~~GPf~~~~~~v~~Aci~~-g~hYvDi--s--ge~~~~~~~~~~~~~~A~~  103 (138)
                      ++.++.-  ...|.+.+.++-+...+-|-.-+-..  ...-++..++. .+++|-+  +  |-..-..    +.-+.|++
T Consensus       156 ~i~~iEeP~~~~d~~~~~~l~~~~~ipia~dE~~~--~~~~~~~~i~~~~~d~v~~k~~~~GGi~~~~----~~~~~A~~  229 (265)
T cd03315         156 GLDYVEQPLPADDLEGRAALARATDTPIMADESAF--TPHDAFRELALGAADAVNIKTAKTGGLTKAQ----RVLAVAEA  229 (265)
T ss_pred             CCCEEECCCCcccHHHHHHHHhhCCCCEEECCCCC--CHHHHHHHHHhCCCCEEEEecccccCHHHHH----HHHHHHHH
Confidence            3455553  23456777777777666555544322  22335556654 4776543  2  3322222    44477999


Q ss_pred             CCCEEEeCCCCccchHhHHHHHHHHHhh
Q psy12849        104 SEVCVVSACGIETLPIDMGVLMLQDSFE  131 (138)
Q Consensus       104 ~gv~iv~~~G~d~~p~dl~~~~~~~~~~  131 (138)
                      .|+.+++++.+++..+.....+++..+.
T Consensus       230 ~gi~~~~~~~~~s~i~~~a~~hlaa~~~  257 (265)
T cd03315         230 LGLPVMVGSMIESGLGTLANAHLAAALR  257 (265)
T ss_pred             cCCcEEecCccchHHHHHHHHHHHHhCC
Confidence            9999999988877777777677776554

Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and residues that can function as general acid/base catalysts, a Lys-X-Lys motif and another conserved lysine. Despite these conserved residues, the members of the MLE subgroup, like muconate lactonizing enzyme, o-succinylbenzoate synthase (OSBS) and N-acylamino acid racemase (NAAAR), catalyze different reactions.

>PRK05875 short chain dehydrogenase; Provisional

Probab=82.12  E-value=2  Score=33.40  Aligned_cols=32  Identities=13%  Similarity=0.284  Sum_probs=27.7

Q ss_pred             CCcceEEeeCCCHHHHHHHHh-------cCcEEEecCCC
Q psy12849         30 RTNRTTVVNTINESSILIMAK-------KCRVILNCVGP   61 (138)
Q Consensus        30 ~~~~~~~~D~~d~~~L~~~~~-------~~dvVIn~~GP   61 (138)
                      .++.++.+|+.|++++.++++       +.|++||++|.
T Consensus        58 ~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~~d~li~~ag~   96 (276)
T PRK05875         58 GAVRYEPADVTDEDQVARAVDAATAWHGRLHGVVHCAGG   96 (276)
T ss_pred             CceEEEEcCCCCHHHHHHHHHHHHHHcCCCCEEEECCCc
Confidence            467888999999999998887       57999999984

>PRK08277 D-mannonate oxidoreductase; Provisional

Probab=81.96  E-value=2  Score=33.51  Aligned_cols=32  Identities=13%  Similarity=0.317  Sum_probs=27.3

Q ss_pred             CcceEEeeCCCHHHHHHHHh-------cCcEEEecCCCc
Q psy12849         31 TNRTTVVNTINESSILIMAK-------KCRVILNCVGPY   62 (138)
Q Consensus        31 ~~~~~~~D~~d~~~L~~~~~-------~~dvVIn~~GPf   62 (138)
                      ++.++++|+.|++++.++++       +.|++||++|..
T Consensus        60 ~~~~~~~Dl~~~~~v~~~~~~~~~~~g~id~li~~ag~~   98 (278)
T PRK08277         60 EALAVKADVLDKESLEQARQQILEDFGPCDILINGAGGN   98 (278)
T ss_pred             eEEEEECCCCCHHHHHHHHHHHHHHcCCCCEEEECCCCC
Confidence            57788999999999888876       579999999954

>PRK07577 short chain dehydrogenase; Provisional

Probab=81.95  E-value=2.4  Score=31.85  Aligned_cols=31  Identities=13%  Similarity=0.036  Sum_probs=26.6

Q ss_pred             ceEEeeCCCHHHHHHHHh------cCcEEEecCCCcc
Q psy12849         33 RTTVVNTINESSILIMAK------KCRVILNCVGPYT   63 (138)
Q Consensus        33 ~~~~~D~~d~~~L~~~~~------~~dvVIn~~GPf~   63 (138)
                      .++.+|+.|++++.++++      +.|++|||+|...
T Consensus        44 ~~~~~D~~~~~~~~~~~~~~~~~~~~d~vi~~ag~~~   80 (234)
T PRK07577         44 ELFACDLADIEQTAATLAQINEIHPVDAIVNNVGIAL   80 (234)
T ss_pred             eEEEeeCCCHHHHHHHHHHHHHhCCCcEEEECCCCCC
Confidence            678999999999988887      5799999999643

>PRK07576 short chain dehydrogenase; Provisional

Probab=81.85  E-value=1.6  Score=34.07  Aligned_cols=31  Identities=3%  Similarity=-0.001  Sum_probs=26.6

Q ss_pred             CcceEEeeCCCHHHHHHHHhc-------CcEEEecCCC
Q psy12849         31 TNRTTVVNTINESSILIMAKK-------CRVILNCVGP   61 (138)
Q Consensus        31 ~~~~~~~D~~d~~~L~~~~~~-------~dvVIn~~GP   61 (138)
                      ++.++.+|+.|++++.+++++       .|++||++|.
T Consensus        59 ~~~~~~~Dv~~~~~i~~~~~~~~~~~~~iD~vi~~ag~   96 (264)
T PRK07576         59 EGLGVSADVRDYAAVEAAFAQIADEFGPIDVLVSGAAG   96 (264)
T ss_pred             ceEEEECCCCCHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence            457889999999999988876       4999999974

>PRK07806 short chain dehydrogenase; Provisional

Probab=81.64  E-value=2.4  Score=32.30  Aligned_cols=32  Identities=6%  Similarity=0.011  Sum_probs=27.2

Q ss_pred             CcceEEeeCCCHHHHHHHHh-------cCcEEEecCCCc
Q psy12849         31 TNRTTVVNTINESSILIMAK-------KCRVILNCVGPY   62 (138)
Q Consensus        31 ~~~~~~~D~~d~~~L~~~~~-------~~dvVIn~~GPf   62 (138)
                      ++.++.+|+.|++++.++++       +.|+||+++|..
T Consensus        57 ~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d~vi~~ag~~   95 (248)
T PRK07806         57 RASAVGADLTDEESVAALMDTAREEFGGLDALVLNASGG   95 (248)
T ss_pred             ceEEEEcCCCCHHHHHHHHHHHHHhCCCCcEEEECCCCC
Confidence            56788999999999988887       479999999854

>PRK08264 short chain dehydrogenase; Validated

Probab=81.63  E-value=2.4  Score=32.02  Aligned_cols=32  Identities=13%  Similarity=0.185  Sum_probs=28.4

Q ss_pred             CCcceEEeeCCCHHHHHHHHhc---CcEEEecCCC
Q psy12849         30 RTNRTTVVNTINESSILIMAKK---CRVILNCVGP   61 (138)
Q Consensus        30 ~~~~~~~~D~~d~~~L~~~~~~---~dvVIn~~GP   61 (138)
                      .++.++.+|+.|++++.+++++   .|+||+++|.
T Consensus        49 ~~~~~~~~D~~~~~~~~~~~~~~~~id~vi~~ag~   83 (238)
T PRK08264         49 PRVVPLQLDVTDPASVAAAAEAASDVTILVNNAGI   83 (238)
T ss_pred             CceEEEEecCCCHHHHHHHHHhcCCCCEEEECCCc
Confidence            3578899999999999999885   6999999997

>PRK07411 hypothetical protein; Validated

Probab=81.62  E-value=6.1  Score=33.55  Aligned_cols=50  Identities=12%  Similarity=0.091  Sum_probs=37.1

Q ss_pred             CcceEEeeCCCHHHHHHHHhcCcEEEecCCCccchhHHHHHHHHHcCCCeee
Q psy12849         31 TNRTTVVNTINESSILIMAKKCRVILNCVGPYTWYGEAVVKACIEAKTHHVD   82 (138)
Q Consensus        31 ~~~~~~~D~~d~~~L~~~~~~~dvVIn~~GPf~~~~~~v~~Aci~~g~hYvD   82 (138)
                      +++...-.+ +++...++++++|+||+|...+.. -.-+-++|.+.++++|-
T Consensus       109 ~v~~~~~~~-~~~~~~~~~~~~D~Vvd~~d~~~~-r~~ln~~~~~~~~p~v~  158 (390)
T PRK07411        109 QVDLYETRL-SSENALDILAPYDVVVDGTDNFPT-RYLVNDACVLLNKPNVY  158 (390)
T ss_pred             eEEEEeccc-CHHhHHHHHhCCCEEEECCCCHHH-HHHHHHHHHHcCCCEEE
Confidence            344444444 345677899999999999987753 24678999999999885

>PRK08263 short chain dehydrogenase; Provisional

Probab=81.55  E-value=1.8  Score=33.77  Aligned_cols=33  Identities=6%  Similarity=0.145  Sum_probs=27.8

Q ss_pred             CCcceEEeeCCCHHHHHHHHhc-------CcEEEecCCCc
Q psy12849         30 RTNRTTVVNTINESSILIMAKK-------CRVILNCVGPY   62 (138)
Q Consensus        30 ~~~~~~~~D~~d~~~L~~~~~~-------~dvVIn~~GPf   62 (138)
                      .++.++++|+.|++++.+++++       .|++|||+|..
T Consensus        49 ~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d~vi~~ag~~   88 (275)
T PRK08263         49 DRLLPLALDVTDRAAVFAAVETAVEHFGRLDIVVNNAGYG   88 (275)
T ss_pred             CCeeEEEccCCCHHHHHHHHHHHHHHcCCCCEEEECCCCc
Confidence            3567889999999999888774       59999999964

>PRK07074 short chain dehydrogenase; Provisional

Probab=81.53  E-value=2.8  Score=32.10  Aligned_cols=32  Identities=9%  Similarity=0.127  Sum_probs=27.7

Q ss_pred             CCcceEEeeCCCHHHHHHHHhc-------CcEEEecCCC
Q psy12849         30 RTNRTTVVNTINESSILIMAKK-------CRVILNCVGP   61 (138)
Q Consensus        30 ~~~~~~~~D~~d~~~L~~~~~~-------~dvVIn~~GP   61 (138)
                      .++.++.+|+.|++++.+++.+       .|+||+++|.
T Consensus        49 ~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d~vi~~ag~   87 (257)
T PRK07074         49 ARFVPVACDLTDAASLAAALANAAAERGPVDVLVANAGA   87 (257)
T ss_pred             CceEEEEecCCCHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence            3578899999999999888875       6999999984

>PRK08328 hypothetical protein; Provisional

Probab=81.40  E-value=8.9  Score=30.09  Aligned_cols=41  Identities=17%  Similarity=0.186  Sum_probs=33.2

Q ss_pred             CHHHHHHHHhcCcEEEecCCCccchhHHHHHHHHHcCCCeee
Q psy12849         41 NESSILIMAKKCRVILNCVGPYTWYGEAVVKACIEAKTHHVD   82 (138)
Q Consensus        41 d~~~L~~~~~~~dvVIn~~GPf~~~~~~v~~Aci~~g~hYvD   82 (138)
                      +++.+.++++++|+||+|...+. .-..+-++|.+.|+++|.
T Consensus       108 ~~~~~~~~l~~~D~Vid~~d~~~-~r~~l~~~~~~~~ip~i~  148 (231)
T PRK08328        108 SEENIDEVLKGVDVIVDCLDNFE-TRYLLDDYAHKKGIPLVH  148 (231)
T ss_pred             CHHHHHHHHhcCCEEEECCCCHH-HHHHHHHHHHHcCCCEEE
Confidence            45668889999999999997653 334567889999999987

>PRK06196 oxidoreductase; Provisional

Probab=81.36  E-value=2.2  Score=34.28  Aligned_cols=32  Identities=13%  Similarity=0.256  Sum_probs=27.5

Q ss_pred             CcceEEeeCCCHHHHHHHHh-------cCcEEEecCCCc
Q psy12849         31 TNRTTVVNTINESSILIMAK-------KCRVILNCVGPY   62 (138)
Q Consensus        31 ~~~~~~~D~~d~~~L~~~~~-------~~dvVIn~~GPf   62 (138)
                      .+.++.+|+.|.+++.++++       +.|++||++|.+
T Consensus        72 ~v~~~~~Dl~d~~~v~~~~~~~~~~~~~iD~li~nAg~~  110 (315)
T PRK06196         72 GVEVVMLDLADLESVRAFAERFLDSGRRIDILINNAGVM  110 (315)
T ss_pred             hCeEEEccCCCHHHHHHHHHHHHhcCCCCCEEEECCCCC
Confidence            37889999999999988885       479999999954

>PRK06171 sorbitol-6-phosphate 2-dehydrogenase; Provisional

Probab=81.36  E-value=1.7  Score=33.55  Aligned_cols=32  Identities=6%  Similarity=0.014  Sum_probs=27.2

Q ss_pred             CcceEEeeCCCHHHHHHHHhc-------CcEEEecCCCc
Q psy12849         31 TNRTTVVNTINESSILIMAKK-------CRVILNCVGPY   62 (138)
Q Consensus        31 ~~~~~~~D~~d~~~L~~~~~~-------~dvVIn~~GPf   62 (138)
                      ++.++.+|+.|++++.++++.       .|++||++|..
T Consensus        50 ~~~~~~~D~~~~~~~~~~~~~~~~~~g~id~li~~Ag~~   88 (266)
T PRK06171         50 NYQFVPTDVSSAEEVNHTVAEIIEKFGRIDGLVNNAGIN   88 (266)
T ss_pred             ceEEEEccCCCHHHHHHHHHHHHHHcCCCCEEEECCccc
Confidence            567889999999999888774       59999999953

>PRK06940 short chain dehydrogenase; Provisional

Probab=81.34  E-value=2.1  Score=33.75  Aligned_cols=32  Identities=16%  Similarity=0.157  Sum_probs=27.5

Q ss_pred             CcceEEeeCCCHHHHHHHHh------cCcEEEecCCCc
Q psy12849         31 TNRTTVVNTINESSILIMAK------KCRVILNCVGPY   62 (138)
Q Consensus        31 ~~~~~~~D~~d~~~L~~~~~------~~dvVIn~~GPf   62 (138)
                      ++.++.+|+.|++++.++++      ..|++||++|-+
T Consensus        50 ~~~~~~~Dv~d~~~i~~~~~~~~~~g~id~li~nAG~~   87 (275)
T PRK06940         50 DVSTQEVDVSSRESVKALAATAQTLGPVTGLVHTAGVS   87 (275)
T ss_pred             eEEEEEeecCCHHHHHHHHHHHHhcCCCCEEEECCCcC
Confidence            56789999999999998886      379999999954

>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]

Probab=81.26  E-value=1.5  Score=35.99  Aligned_cols=70  Identities=17%  Similarity=0.192  Sum_probs=48.6

Q ss_pred             cCcEEEecCCCccchhH----HHHHHHHHcCCCeeeCCCChHHHHHHHHHhHHHHHhCCCEEEeCCCCccchHhHHHHHH
Q psy12849         51 KCRVILNCVGPYTWYGE----AVVKACIEAKTHHVDITGEPYFMEYMQYEYNTRAQESEVCVVSACGIETLPIDMGVLML  126 (138)
Q Consensus        51 ~~dvVIn~~GPf~~~~~----~v~~Aci~~g~hYvDisge~~~~~~~~~~~~~~A~~~gv~iv~~~G~d~~p~dl~~~~~  126 (138)
                      ++|++|||. |-...+.    ++-..++..+.-..|+-..|.-+     .|-++|+++|..++.|.|       |+++.+
T Consensus       190 ~~dliINaT-p~Gm~~~~~~~~~~~~~l~~~~~v~D~vY~P~~T-----plL~~A~~~G~~~idGl~-------Mlv~Qa  256 (283)
T COG0169         190 EADLLINAT-PVGMAGPEGDSPVPAELLPKGAIVYDVVYNPLET-----PLLREARAQGAKTIDGLG-------MLVHQA  256 (283)
T ss_pred             ccCEEEECC-CCCCCCCCCCCCCcHHhcCcCCEEEEeccCCCCC-----HHHHHHHHcCCeEECcHH-------HHHHHH
Confidence            689999999 5454442    33457788888888997775433     444679999999877766       555666


Q ss_pred             HHHhhhh
Q psy12849        127 QDSFEGH  133 (138)
Q Consensus       127 ~~~~~~~  133 (138)
                      +..|+--
T Consensus       257 a~aF~lw  263 (283)
T COG0169         257 AEAFELW  263 (283)
T ss_pred             HHHHHHH
Confidence            6666543

>PRK05693 short chain dehydrogenase; Provisional

Probab=81.21  E-value=4  Score=31.78  Aligned_cols=31  Identities=13%  Similarity=0.183  Sum_probs=26.4

Q ss_pred             CcceEEeeCCCHHHHHHHHh-------cCcEEEecCCC
Q psy12849         31 TNRTTVVNTINESSILIMAK-------KCRVILNCVGP   61 (138)
Q Consensus        31 ~~~~~~~D~~d~~~L~~~~~-------~~dvVIn~~GP   61 (138)
                      .+.++.+|+.|++++.++++       +.|+|||++|.
T Consensus        45 ~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id~vi~~ag~   82 (274)
T PRK05693         45 GFTAVQLDVNDGAALARLAEELEAEHGGLDVLINNAGY   82 (274)
T ss_pred             CCeEEEeeCCCHHHHHHHHHHHHHhcCCCCEEEECCCC
Confidence            46788999999999988875       46999999984

>PRK05854 short chain dehydrogenase; Provisional

Probab=81.16  E-value=2.2  Score=34.50  Aligned_cols=33  Identities=9%  Similarity=0.183  Sum_probs=28.4

Q ss_pred             CCcceEEeeCCCHHHHHHHHhc-------CcEEEecCCCc
Q psy12849         30 RTNRTTVVNTINESSILIMAKK-------CRVILNCVGPY   62 (138)
Q Consensus        30 ~~~~~~~~D~~d~~~L~~~~~~-------~dvVIn~~GPf   62 (138)
                      .++.++.+|+.|.+++.++++.       .|++||++|.+
T Consensus        65 ~~v~~~~~Dl~d~~sv~~~~~~~~~~~~~iD~li~nAG~~  104 (313)
T PRK05854         65 AKLSLRALDLSSLASVAALGEQLRAEGRPIHLLINNAGVM  104 (313)
T ss_pred             CceEEEEecCCCHHHHHHHHHHHHHhCCCccEEEECCccc
Confidence            3578899999999999988875       69999999954

>PRK06841 short chain dehydrogenase; Provisional

Probab=81.00  E-value=2.6  Score=32.17  Aligned_cols=33  Identities=12%  Similarity=0.195  Sum_probs=27.6

Q ss_pred             CCcceEEeeCCCHHHHHHHHhc-------CcEEEecCCCc
Q psy12849         30 RTNRTTVVNTINESSILIMAKK-------CRVILNCVGPY   62 (138)
Q Consensus        30 ~~~~~~~~D~~d~~~L~~~~~~-------~dvVIn~~GPf   62 (138)
                      .++.++.+|+.+++++.+++++       .|++||++|..
T Consensus        61 ~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~~d~vi~~ag~~  100 (255)
T PRK06841         61 GNAKGLVCDVSDSQSVEAAVAAVISAFGRIDILVNSAGVA  100 (255)
T ss_pred             CceEEEEecCCCHHHHHHHHHHHHHHhCCCCEEEECCCCC
Confidence            3456899999999999888874       59999999864

>cd01487 E1_ThiF_like E1_ThiF_like

Probab=80.97  E-value=7.8  Score=29.07  Aligned_cols=54  Identities=7%  Similarity=0.131  Sum_probs=37.6

Q ss_pred             CcceEEeeCCCHHHHHHHHhcCcEEEecCCCccchhHHHHHHHHHc-CCCeeeCCCC
Q psy12849         31 TNRTTVVNTINESSILIMAKKCRVILNCVGPYTWYGEAVVKACIEA-KTHHVDITGE   86 (138)
Q Consensus        31 ~~~~~~~D~~d~~~L~~~~~~~dvVIn~~GPf~~~~~~v~~Aci~~-g~hYvDisge   86 (138)
                      ++....-.+ +++.+.++++++|+||.|...+... ..+.+.|.+. ++.+|--++.
T Consensus        69 ~i~~~~~~~-~~~~~~~~l~~~DlVi~~~d~~~~r-~~i~~~~~~~~~ip~i~~~~~  123 (174)
T cd01487          69 KIEAINIKI-DENNLEGLFGDCDIVVEAFDNAETK-AMLAESLLGNKNKPVVCASGM  123 (174)
T ss_pred             EEEEEEeec-ChhhHHHHhcCCCEEEECCCCHHHH-HHHHHHHHHHCCCCEEEEehh
Confidence            344444444 3466888999999999998755432 4578888888 9999865443

Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>PRK07201 short chain dehydrogenase; Provisional

Probab=80.93  E-value=3.6  Score=36.25  Aligned_cols=48  Identities=13%  Similarity=0.087  Sum_probs=35.8

Q ss_pred             CCcceEEeeCCC------HHHHHHHHhcCcEEEecCCCccch-------------hHHHHHHHHHcCC
Q psy12849         30 RTNRTTVVNTIN------ESSILIMAKKCRVILNCVGPYTWY-------------GEAVVKACIEAKT   78 (138)
Q Consensus        30 ~~~~~~~~D~~d------~~~L~~~~~~~dvVIn~~GPf~~~-------------~~~v~~Aci~~g~   78 (138)
                      .+++++..|+.|      .+.+.++ +++|+||||+|.+...             ...++++|.+.|+
T Consensus        51 ~~v~~~~~Dl~~~~~~~~~~~~~~l-~~~D~Vih~Aa~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~  117 (657)
T PRK07201         51 DRVVPLVGDLTEPGLGLSEADIAEL-GDIDHVVHLAAIYDLTADEEAQRAANVDGTRNVVELAERLQA  117 (657)
T ss_pred             CcEEEEecccCCccCCcCHHHHHHh-cCCCEEEECceeecCCCCHHHHHHHHhHHHHHHHHHHHhcCC
Confidence            467888999988      4567776 8999999999865321             2467788888753

>PRK09989 hypothetical protein; Provisional

Probab=80.81  E-value=16  Score=28.48  Aligned_cols=93  Identities=8%  Similarity=-0.072  Sum_probs=59.5

Q ss_pred             HHHHHhhhhcCCCCcceEEeeCCCHHHHHHHHhcCcEEEecCCC-cc--------------------chhHHHHHHHHHc
Q psy12849         18 FLFLQKASWFGVRTNRTTVVNTINESSILIMAKKCRVILNCVGP-YT--------------------WYGEAVVKACIEA   76 (138)
Q Consensus        18 ~~~~~~a~~~~~~~~~~~~~D~~d~~~L~~~~~~~dvVIn~~GP-f~--------------------~~~~~v~~Aci~~   76 (138)
                      ..+++.+.+.|-+.+++....-.+.+++.+++++..+-+.+.++ +.                    ..-.+.++.|.+.
T Consensus        18 ~~~l~~~~~~Gfd~VEl~~~~~~~~~~~~~~l~~~Gl~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~A~~l   97 (258)
T PRK09989         18 IERFAAARKAGFDAVEFLFPYDYSTLQIQKQLEQNHLTLALFNTAPGDINAGEWGLSALPGREHEARADIDLALEYALAL   97 (258)
T ss_pred             HHHHHHHHHcCCCEEEECCcccCCHHHHHHHHHHcCCcEEEeccCCCccCCCCCcccCCCccHHHHHHHHHHHHHHHHHh
Confidence            45677788888777776443335778999999998877775432 10                    0124677778899


Q ss_pred             CCCeeeC-CCCh-------H---HHHHHHHHhHHHHHhCCCEEEe
Q psy12849         77 KTHHVDI-TGEP-------Y---FMEYMQYEYNTRAQESEVCVVS  110 (138)
Q Consensus        77 g~hYvDi-sge~-------~---~~~~~~~~~~~~A~~~gv~iv~  110 (138)
                      |+.||=+ +|..       .   ...+-..+.-+.|++.|+.+..
T Consensus        98 g~~~v~v~~g~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~l~l  142 (258)
T PRK09989         98 NCEQVHVMAGVVPAGEDAERYRAVFIDNLRYAADRFAPHGKRILV  142 (258)
T ss_pred             CcCEEEECccCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCEEEE
Confidence            9999864 2221       1   1112223556678889998855

>PRK08339 short chain dehydrogenase; Provisional

Probab=80.79  E-value=2.6  Score=32.97  Aligned_cols=33  Identities=9%  Similarity=0.022  Sum_probs=28.1

Q ss_pred             CCcceEEeeCCCHHHHHHHHhc------CcEEEecCCCc
Q psy12849         30 RTNRTTVVNTINESSILIMAKK------CRVILNCVGPY   62 (138)
Q Consensus        30 ~~~~~~~~D~~d~~~L~~~~~~------~dvVIn~~GPf   62 (138)
                      .++.++.+|+.|++++.++++.      .|++||++|..
T Consensus        58 ~~~~~~~~Dv~~~~~i~~~~~~~~~~g~iD~lv~nag~~   96 (263)
T PRK08339         58 VDVSYIVADLTKREDLERTVKELKNIGEPDIFFFSTGGP   96 (263)
T ss_pred             CceEEEEecCCCHHHHHHHHHHHHhhCCCcEEEECCCCC
Confidence            3578899999999999998873      79999999853

>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional

Probab=80.79  E-value=7.4  Score=30.85  Aligned_cols=42  Identities=17%  Similarity=0.336  Sum_probs=34.8

Q ss_pred             CHHHHHHHHhcCcEEEecCCCccchhHHHHHHHHHcCCCeeeC
Q psy12849         41 NESSILIMAKKCRVILNCVGPYTWYGEAVVKACIEAKTHHVDI   83 (138)
Q Consensus        41 d~~~L~~~~~~~dvVIn~~GPf~~~~~~v~~Aci~~g~hYvDi   83 (138)
                      +++.+..+++++|+||.|...+.. -..+-++|.+.+.++|..
T Consensus       112 ~~~~~~~~~~~~DiVi~~~D~~~~-r~~ln~~~~~~~ip~v~~  153 (245)
T PRK05690        112 DDDELAALIAGHDLVLDCTDNVAT-RNQLNRACFAAKKPLVSG  153 (245)
T ss_pred             CHHHHHHHHhcCCEEEecCCCHHH-HHHHHHHHHHhCCEEEEe
Confidence            456678899999999999987653 356889999999999984

>KOG1200|consensus

Probab=80.79  E-value=1.4  Score=35.21  Aligned_cols=39  Identities=15%  Similarity=0.218  Sum_probs=29.3

Q ss_pred             hhhhcCC-CCcceEEeeCCCHHHHHHHHhc-------CcEEEecCCC
Q psy12849         23 KASWFGV-RTNRTTVVNTINESSILIMAKK-------CRVILNCVGP   61 (138)
Q Consensus        23 ~a~~~~~-~~~~~~~~D~~d~~~L~~~~~~-------~dvVIn~~GP   61 (138)
                      -|..++- .+-....+|++++.+++.++++       .++++||+|=
T Consensus        54 ta~~L~g~~~h~aF~~DVS~a~~v~~~l~e~~k~~g~psvlVncAGI  100 (256)
T KOG1200|consen   54 TAGDLGGYGDHSAFSCDVSKAHDVQNTLEEMEKSLGTPSVLVNCAGI  100 (256)
T ss_pred             HHhhcCCCCccceeeeccCcHHHHHHHHHHHHHhcCCCcEEEEcCcc
Confidence            3444433 5667799999999998887664       5999999994

>PRK06197 short chain dehydrogenase; Provisional

Probab=80.78  E-value=2.3  Score=33.92  Aligned_cols=32  Identities=13%  Similarity=0.160  Sum_probs=27.5

Q ss_pred             CCcceEEeeCCCHHHHHHHHh-------cCcEEEecCCC
Q psy12849         30 RTNRTTVVNTINESSILIMAK-------KCRVILNCVGP   61 (138)
Q Consensus        30 ~~~~~~~~D~~d~~~L~~~~~-------~~dvVIn~~GP   61 (138)
                      .++.++.+|+.|.+++.++++       +.|++||++|.
T Consensus        67 ~~~~~~~~Dl~d~~~v~~~~~~~~~~~~~iD~li~nAg~  105 (306)
T PRK06197         67 ADVTLQELDLTSLASVRAAADALRAAYPRIDLLINNAGV  105 (306)
T ss_pred             CceEEEECCCCCHHHHHHHHHHHHhhCCCCCEEEECCcc
Confidence            457889999999999988877       36999999985

>PRK05717 oxidoreductase; Validated

Probab=80.71  E-value=1.9  Score=33.14  Aligned_cols=32  Identities=3%  Similarity=-0.002  Sum_probs=26.4

Q ss_pred             CcceEEeeCCCHHHHHHHHhc-------CcEEEecCCCc
Q psy12849         31 TNRTTVVNTINESSILIMAKK-------CRVILNCVGPY   62 (138)
Q Consensus        31 ~~~~~~~D~~d~~~L~~~~~~-------~dvVIn~~GPf   62 (138)
                      ++.++.+|+.|++++.+++++       .|++||++|..
T Consensus        57 ~~~~~~~Dl~~~~~~~~~~~~~~~~~g~id~li~~ag~~   95 (255)
T PRK05717         57 NAWFIAMDVADEAQVAAGVAEVLGQFGRLDALVCNAAIA   95 (255)
T ss_pred             ceEEEEccCCCHHHHHHHHHHHHHHhCCCCEEEECCCcc
Confidence            577899999999998776654       59999999854

>PRK08278 short chain dehydrogenase; Provisional

Probab=80.68  E-value=2.7  Score=32.96  Aligned_cols=32  Identities=9%  Similarity=0.064  Sum_probs=27.6

Q ss_pred             CCcceEEeeCCCHHHHHHHHh-------cCcEEEecCCC
Q psy12849         30 RTNRTTVVNTINESSILIMAK-------KCRVILNCVGP   61 (138)
Q Consensus        30 ~~~~~~~~D~~d~~~L~~~~~-------~~dvVIn~~GP   61 (138)
                      .++.++.+|+.+++++.++++       +.|++||++|.
T Consensus        62 ~~~~~~~~D~~~~~~i~~~~~~~~~~~g~id~li~~ag~  100 (273)
T PRK08278         62 GQALPLVGDVRDEDQVAAAVAKAVERFGGIDICVNNASA  100 (273)
T ss_pred             CceEEEEecCCCHHHHHHHHHHHHHHhCCCCEEEECCCC
Confidence            357788999999999998887       46999999985

>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=80.66  E-value=5.6  Score=29.18  Aligned_cols=84  Identities=11%  Similarity=0.035  Sum_probs=51.8

Q ss_pred             CcceEEeeCCCHHHHHHHHhcCcEEEecCCCccchhHHHHHHHHHcCCCeeeCCCChHHHHHHHHHhHHHHHhCCCEEEe
Q psy12849         31 TNRTTVVNTINESSILIMAKKCRVILNCVGPYTWYGEAVVKACIEAKTHHVDITGEPYFMEYMQYEYNTRAQESEVCVVS  110 (138)
Q Consensus        31 ~~~~~~~D~~d~~~L~~~~~~~dvVIn~~GPf~~~~~~v~~Aci~~g~hYvDisge~~~~~~~~~~~~~~A~~~gv~iv~  110 (138)
                      ......++- +..++.+.++++|+||.++|--.    .+=..-++.|+|-+|+.=+..       . ++...++...+.|
T Consensus        52 gatV~~~~~-~t~~l~~~v~~ADIVvsAtg~~~----~i~~~~ikpGa~Vidvg~~~~-------~-~~~~~~~a~~~tP  118 (140)
T cd05212          52 GATVYSCDW-KTIQLQSKVHDADVVVVGSPKPE----KVPTEWIKPGATVINCSPTKL-------S-GDDVKESASLYVP  118 (140)
T ss_pred             CCEEEEeCC-CCcCHHHHHhhCCEEEEecCCCC----ccCHHHcCCCCEEEEcCCCcc-------c-chhhHhhceEEcC
Confidence            456666653 33468889999999999998442    244556889999999854431       1 2334444455555


Q ss_pred             CCCCccchHhHHHHHHHHHh
Q psy12849        111 ACGIETLPIDMGVLMLQDSF  130 (138)
Q Consensus       111 ~~G~d~~p~dl~~~~~~~~~  130 (138)
                      --|   +.|-+....+.+.+
T Consensus       119 vpg---GVGp~T~a~L~~n~  135 (140)
T cd05212         119 MTG---GVGKLTVAMRMQNM  135 (140)
T ss_pred             CCC---CchHHHHHHHHHHH
Confidence            444   44445555554443

NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional

>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional

Probab=80.54  E-value=4.7  Score=30.90  Aligned_cols=30  Identities=13%  Similarity=0.131  Sum_probs=25.9

Q ss_pred             CcceEEeeCCCHHHHHHHHh-------cCcEEEecCC
Q psy12849         31 TNRTTVVNTINESSILIMAK-------KCRVILNCVG   60 (138)
Q Consensus        31 ~~~~~~~D~~d~~~L~~~~~-------~~dvVIn~~G   60 (138)
                      ++.++.+|+.|++++.++++       +.|++||++|
T Consensus        57 ~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~lv~nAg   93 (260)
T PRK12823         57 EALALTADLETYAGAQAAMAAAVEAFGRIDVLINNVG   93 (260)
T ss_pred             eEEEEEEeCCCHHHHHHHHHHHHHHcCCCeEEEECCc
Confidence            56788999999999888877       4699999997

>PRK05993 short chain dehydrogenase; Provisional

Probab=80.48  E-value=1.9  Score=33.90  Aligned_cols=31  Identities=10%  Similarity=0.029  Sum_probs=26.1

Q ss_pred             CcceEEeeCCCHHHHHHHHhc--------CcEEEecCCC
Q psy12849         31 TNRTTVVNTINESSILIMAKK--------CRVILNCVGP   61 (138)
Q Consensus        31 ~~~~~~~D~~d~~~L~~~~~~--------~dvVIn~~GP   61 (138)
                      .+.++.+|+.|++++.+++++        .|++||++|.
T Consensus        48 ~~~~~~~Dl~d~~~~~~~~~~~~~~~~g~id~li~~Ag~   86 (277)
T PRK05993         48 GLEAFQLDYAEPESIAALVAQVLELSGGRLDALFNNGAY   86 (277)
T ss_pred             CceEEEccCCCHHHHHHHHHHHHHHcCCCccEEEECCCc
Confidence            467899999999998887763        4999999974

>PRK07825 short chain dehydrogenase; Provisional

Probab=80.35  E-value=1.9  Score=33.49  Aligned_cols=32  Identities=13%  Similarity=0.124  Sum_probs=26.4

Q ss_pred             CcceEEeeCCCHHHHHHHHhc-------CcEEEecCCCc
Q psy12849         31 TNRTTVVNTINESSILIMAKK-------CRVILNCVGPY   62 (138)
Q Consensus        31 ~~~~~~~D~~d~~~L~~~~~~-------~dvVIn~~GPf   62 (138)
                      ++.++.+|+.|++++.+++++       .|++||++|..
T Consensus        51 ~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~li~~ag~~   89 (273)
T PRK07825         51 LVVGGPLDVTDPASFAAFLDAVEADLGPIDVLVNNAGVM   89 (273)
T ss_pred             cceEEEccCCCHHHHHHHHHHHHHHcCCCCEEEECCCcC
Confidence            478899999999998776664       58999999853

>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases

Probab=80.35  E-value=5.1  Score=28.40  Aligned_cols=34  Identities=12%  Similarity=0.198  Sum_probs=29.4

Q ss_pred             CCcceEEeeCCCHHHHHHHHhc-------CcEEEecCCCcc
Q psy12849         30 RTNRTTVVNTINESSILIMAKK-------CRVILNCVGPYT   63 (138)
Q Consensus        30 ~~~~~~~~D~~d~~~L~~~~~~-------~dvVIn~~GPf~   63 (138)
                      .++.+.++|+.+++++.++++.       .|++|||+|.+.
T Consensus        52 ~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ld~li~~ag~~~   92 (167)
T PF00106_consen   52 AKITFIECDLSDPESIRALIEEVIKRFGPLDILINNAGIFS   92 (167)
T ss_dssp             SEEEEEESETTSHHHHHHHHHHHHHHHSSESEEEEECSCTT
T ss_pred             ccccccccccccccccccccccccccccccccccccccccc
Confidence            5789999999999998888774       689999999765

As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....

>PRK08589 short chain dehydrogenase; Validated

Probab=80.28  E-value=2.1  Score=33.53  Aligned_cols=32  Identities=19%  Similarity=0.242  Sum_probs=27.4

Q ss_pred             CcceEEeeCCCHHHHHHHHhc-------CcEEEecCCCc
Q psy12849         31 TNRTTVVNTINESSILIMAKK-------CRVILNCVGPY   62 (138)
Q Consensus        31 ~~~~~~~D~~d~~~L~~~~~~-------~dvVIn~~GPf   62 (138)
                      ++.++.+|+.|++++.++++.       .|++||++|..
T Consensus        55 ~~~~~~~Dl~~~~~~~~~~~~~~~~~g~id~li~~Ag~~   93 (272)
T PRK08589         55 KAKAYHVDISDEQQVKDFASEIKEQFGRVDVLFNNAGVD   93 (272)
T ss_pred             eEEEEEeecCCHHHHHHHHHHHHHHcCCcCEEEECCCCC
Confidence            578899999999999888874       59999999854

>PRK08642 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=80.19  E-value=2.4  Score=32.27  Aligned_cols=32  Identities=6%  Similarity=0.037  Sum_probs=27.7

Q ss_pred             CCcceEEeeCCCHHHHHHHHhc--------CcEEEecCCC
Q psy12849         30 RTNRTTVVNTINESSILIMAKK--------CRVILNCVGP   61 (138)
Q Consensus        30 ~~~~~~~~D~~d~~~L~~~~~~--------~dvVIn~~GP   61 (138)
                      .++.++.+|+.|++++.+++++        .|++||++|.
T Consensus        52 ~~~~~~~~D~~~~~~~~~~~~~~~~~~g~~id~li~~ag~   91 (253)
T PRK08642         52 DRAIALQADVTDREQVQAMFATATEHFGKPITTVVNNALA   91 (253)
T ss_pred             CceEEEEcCCCCHHHHHHHHHHHHHHhCCCCeEEEECCCc
Confidence            3678899999999999988875        7999999974

>PRK06139 short chain dehydrogenase; Provisional

Probab=80.19  E-value=2.7  Score=34.57  Aligned_cols=31  Identities=16%  Similarity=0.202  Sum_probs=26.6

Q ss_pred             CcceEEeeCCCHHHHHHHHh-------cCcEEEecCCC
Q psy12849         31 TNRTTVVNTINESSILIMAK-------KCRVILNCVGP   61 (138)
Q Consensus        31 ~~~~~~~D~~d~~~L~~~~~-------~~dvVIn~~GP   61 (138)
                      ++.++.+|+.|++++.++++       +.|++||++|-
T Consensus        57 ~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~lVnnAG~   94 (330)
T PRK06139         57 EVLVVPTDVTDADQVKALATQAASFGGRIDVWVNNVGV   94 (330)
T ss_pred             cEEEEEeeCCCHHHHHHHHHHHHHhcCCCCEEEECCCc
Confidence            56788999999999998885       57999999983

>PRK07832 short chain dehydrogenase; Provisional

Probab=80.17  E-value=4.5  Score=31.50  Aligned_cols=32  Identities=13%  Similarity=0.210  Sum_probs=26.5

Q ss_pred             CcceEEeeCCCHHHHHHHHhc-------CcEEEecCCCc
Q psy12849         31 TNRTTVVNTINESSILIMAKK-------CRVILNCVGPY   62 (138)
Q Consensus        31 ~~~~~~~D~~d~~~L~~~~~~-------~dvVIn~~GPf   62 (138)
                      ...+..+|++|++++.+++.+       .|++||++|..
T Consensus        51 ~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~lv~~ag~~   89 (272)
T PRK07832         51 VPEHRALDISDYDAVAAFAADIHAAHGSMDVVMNIAGIS   89 (272)
T ss_pred             cceEEEeeCCCHHHHHHHHHHHHHhcCCCCEEEECCCCC
Confidence            355678999999998887775       69999999964

>PRK07904 short chain dehydrogenase; Provisional

Probab=80.15  E-value=3.9  Score=31.82  Aligned_cols=33  Identities=9%  Similarity=0.098  Sum_probs=26.7

Q ss_pred             CCcceEEeeCCCHHHHHHHHh------cCcEEEecCCCc
Q psy12849         30 RTNRTTVVNTINESSILIMAK------KCRVILNCVGPY   62 (138)
Q Consensus        30 ~~~~~~~~D~~d~~~L~~~~~------~~dvVIn~~GPf   62 (138)
                      .++.++.+|+.|++++.++++      +.|++||++|-+
T Consensus        60 ~~v~~~~~D~~~~~~~~~~~~~~~~~g~id~li~~ag~~   98 (253)
T PRK07904         60 SSVEVIDFDALDTDSHPKVIDAAFAGGDVDVAIVAFGLL   98 (253)
T ss_pred             CceEEEEecCCChHHHHHHHHHHHhcCCCCEEEEeeecC
Confidence            367899999999998666555      589999999854

>PRK07523 gluconate 5-dehydrogenase; Provisional

Probab=80.11  E-value=2.5  Score=32.46  Aligned_cols=32  Identities=6%  Similarity=0.176  Sum_probs=27.8

Q ss_pred             CcceEEeeCCCHHHHHHHHhc-------CcEEEecCCCc
Q psy12849         31 TNRTTVVNTINESSILIMAKK-------CRVILNCVGPY   62 (138)
Q Consensus        31 ~~~~~~~D~~d~~~L~~~~~~-------~dvVIn~~GPf   62 (138)
                      ++.++.+|+.|++++.+++++       .|++||++|..
T Consensus        60 ~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d~li~~ag~~   98 (255)
T PRK07523         60 SAHALAFDVTDHDAVRAAIDAFEAEIGPIDILVNNAGMQ   98 (255)
T ss_pred             eEEEEEccCCCHHHHHHHHHHHHHhcCCCCEEEECCCCC
Confidence            477889999999999999875       68999999864

>COG0460 ThrA Homoserine dehydrogenase [Amino acid transport and metabolism]

Probab=80.08  E-value=9.5  Score=32.15  Aligned_cols=62  Identities=16%  Similarity=0.131  Sum_probs=47.5

Q ss_pred             hcCcEEEecCCCccchhH--HHHHHHHHcCCCeeeCCCChHHHHHHHHHhHHHHHhCCCEEEeCCC
Q psy12849         50 KKCRVILNCVGPYTWYGE--AVVKACIEAKTHHVDITGEPYFMEYMQYEYNTRAQESEVCVVSACG  113 (138)
Q Consensus        50 ~~~dvVIn~~GPf~~~~~--~v~~Aci~~g~hYvDisge~~~~~~~~~~~~~~A~~~gv~iv~~~G  113 (138)
                      +..|+|+++.|+-...++  ...+.+++.|.|-|...=. +....+ .++.+.|+++|+.+.-.+-
T Consensus        77 ~~~dvvve~~~~d~~~~~~~~~~~~al~~GkhVVTaNK~-~lA~~~-~el~~~A~~~g~~l~yEAt  140 (333)
T COG0460          77 EDIDVVVELVGGDVEPAEPADLYLKALENGKHVVTANKA-LLALHY-HELREAAEKNGVKLLYEAT  140 (333)
T ss_pred             ccCCEEEecCcccCCchhhHHHHHHHHHcCCeEECCCch-HhHhhH-HHHHHHHHHhCCeEEEEee
Confidence            457899999988566667  7889999999999987443 443443 3677889999999887654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	138
2z2v_A	365	Hypothetical protein PH1688; L-lysine dehydrogenas	9e-07
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	1e-06

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi} Length = 118

 Score = 43.6 bits (103), Expect = 1e-06
 Identities = 11/70 (15%), Positives = 27/70 (38%), Gaps = 3/70 (4%)

Query: 33  RTTVVNTINESSILIMAKKCRVILNCVGPYTWYGEAVVKACIEAKTHHVDITGEPYFMEY 92
            T  V+  +E+ +         +++   P+ +    + KA   A  H+ D+T +      
Sbjct: 51  ATKQVDAKDEAGLAKALGGFDAVISAA-PF-FLTPIIAKAAKAAGAHYFDLTEDVAATNA 108

Query: 93  MQYEYNTRAQ 102
           ++      +Q
Sbjct: 109 VR-ALVEDSQ 117

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	138
3abi_A	365	Putative uncharacterized protein PH1688; L-lysine	99.84
2z2v_A	365	Hypothetical protein PH1688; L-lysine dehydrogenas	99.63
4ina_A	405	Saccharopine dehydrogenase; structural genomics, P	99.56
2ph5_A	480	Homospermidine synthase; alpha-beta protein, struc	99.28
2axq_A	467	Saccharopine dehydrogenase; rossmann fold variant,	99.2
1ff9_A	450	Saccharopine reductase; lysine biosynthesis, alpha	99.11
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	98.96
1hdo_A	206	Biliverdin IX beta reductase; foetal metabolism, H	97.17
3c1o_A	321	Eugenol synthase; phenylpropene, PIP reductase, sh	97.16
3dhn_A	227	NAD-dependent epimerase/dehydratase; reductase, PF	97.15
3e48_A	289	Putative nucleoside-diphosphate-sugar epimerase; a	97.08
2gas_A	307	Isoflavone reductase; NADPH-dependent reductase, o	97.08
1qyd_A	313	Pinoresinol-lariciresinol reductase; NADPH-depende	97.07
1qyc_A	308	Phenylcoumaran benzylic ether reductase PT1; NADPH	97.05
2r6j_A	318	Eugenol synthase 1; phenylpropene, PIP reductase,	97.03
3r6d_A	221	NAD-dependent epimerase/dehydratase; structural ge	96.9
3qvo_A	236	NMRA family protein; structural genomics, PSI-biol	96.85
2jl1_A	287	Triphenylmethane reductase; oxidoreductase, biorem	96.78
3i6i_A	346	Putative leucoanthocyanidin reductase 1; rossmann	96.73
3dqp_A	219	Oxidoreductase YLBE; alpha-beta protein., structur	96.69
3bio_A	304	Oxidoreductase, GFO/IDH/MOCA family; structural ge	96.68
1oc2_A	348	DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnos	96.67
2wm3_A	299	NMRA-like family domain containing protein 1; unkn	96.63
2zcu_A	286	Uncharacterized oxidoreductase YTFG; alpha-beta sa	96.52
2dc1_A	236	L-aspartate dehydrogenase; NAD, oxidoreductase; HE	96.5
4id9_A	347	Short-chain dehydrogenase/reductase; putative dehy	96.28
4egb_A	346	DTDP-glucose 4,6-dehydratase; rhamnose pathway, ce	96.26
1xq6_A	253	Unknown protein; structural genomics, protein stru	96.2
3ruf_A	351	WBGU; rossmann fold, UDP-hexose 4-epimerase, isome	96.19
3h2s_A	224	Putative NADH-flavin reductase; Q03B84, NESG, LCR1	96.18
2x4g_A	342	Nucleoside-diphosphate-sugar epimerase; isomerase;	96.16
3slg_A	372	PBGP3 protein; structural genomics, seattle struct	96.15
2c5a_A	379	GDP-mannose-3', 5'-epimerase; short chain dehydrat	96.12
1r6d_A	337	TDP-glucose-4,6-dehydratase; rossmann fold, short-	96.1
1f06_A	320	MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH	96.07
4f3y_A	272	DHPR, dihydrodipicolinate reductase; structural ge	96.02
3tnl_A	315	Shikimate dehydrogenase; structural genomics, cent	95.98
2yy7_A	312	L-threonine dehydrogenase; thermolabIle, flavobact	95.96
2q1w_A	333	Putative nucleotide sugar epimerase/ dehydratase;	95.94
2egg_A	297	AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff	95.9
3ijp_A	288	DHPR, dihydrodipicolinate reductase; ssgcid, SBRI,	95.89
1sb8_A	352	WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCN	95.88
1xgk_A	352	Nitrogen metabolite repression regulator NMRA; ros	95.86
3rft_A	267	Uronate dehydrogenase; apoenzyme, rossmann fold, N	95.81
2pzm_A	330	Putative nucleotide sugar epimerase/ dehydratase;	95.69
3sxp_A	362	ADP-L-glycero-D-mannoheptose-6-epimerase; rossman	95.69
2gn4_A	344	FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann	95.68
1p9l_A	245	Dihydrodipicolinate reductase; oxidoreductase, lys	95.68
3ay3_A	267	NAD-dependent epimerase/dehydratase; glucuronic ac	95.66
2hun_A	336	336AA long hypothetical DTDP-glucose 4,6-dehydrat;	95.62
3ajr_A	317	NDP-sugar epimerase; L-threonine dehydrogenase, L-	95.61
3m2p_A	311	UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J	95.61
2ggs_A	273	273AA long hypothetical DTDP-4-dehydrorhamnose red	95.56
1dih_A	273	Dihydrodipicolinate reductase; oxidoreductase; HET	95.55
1orr_A	347	CDP-tyvelose-2-epimerase; rossmann fold, short-cha	95.52
2bka_A	242	CC3, TAT-interacting protein TIP30; NADPH, PEG600,	95.43
2c20_A	330	UDP-glucose 4-epimerase; carbohydrate metabolism,	95.23
1ek6_A	348	UDP-galactose 4-epimerase; short-chain dehydrogena	95.13
1gy8_A	397	UDP-galactose 4-epimerase; oxidoreductase; HET: NA	95.1
1kew_A	361	RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fo	95.09
3sc6_A	287	DTDP-4-dehydrorhamnose reductase; RFBD, structural	95.04
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	94.98
2v6g_A	364	Progesterone 5-beta-reductase; tyrosine-dependent	94.94
2q1s_A	377	Putative nucleotide sugar epimerase/ dehydratase;	94.92
3ew7_A	221	LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend	94.8
1n2s_A	299	DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold	94.79
2z1m_A	345	GDP-D-mannose dehydratase; short-chain dehydrogena	94.78
1vl0_A	292	DTDP-4-dehydrorhamnose reductase, RFBD ortholog; s	94.77
1j5p_A	253	Aspartate dehydrogenase; TM1643, structural genomi	94.73
3jyo_A	283	Quinate/shikimate dehydrogenase; enzyme-cofactor c	94.71
4b8w_A	319	GDP-L-fucose synthase; oxidoreductase; HET: NAP GD	94.7
2c29_D	337	Dihydroflavonol 4-reductase; flavonoids, short deh	94.68
1i24_A	404	Sulfolipid biosynthesis protein SQD1; SDR, short-c	94.61
2ydy_A	315	Methionine adenosyltransferase 2 subunit beta; oxi	94.49
1rpn_A	335	GDP-mannose 4,6-dehydratase; short-chain dehydroge	94.48
3c8m_A	331	Homoserine dehydrogenase; structural genomics, APC	94.47
3enk_A	341	UDP-glucose 4-epimerase; seattle structural genomi	94.47
2bll_A	345	Protein YFBG; decarboxylase, short chain dehydroge	94.45
3gpi_A	286	NAD-dependent epimerase/dehydratase; structural ge	94.4
1e6u_A	321	GDP-fucose synthetase; epimerase/reductase, SDR, R	94.35
1t2a_A	375	GDP-mannose 4,6 dehydratase; structural genomics c	94.18
2p5y_A	311	UDP-glucose 4-epimerase; TTHA0591, structural geno	94.09
2pk3_A	321	GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, shor	93.88
3upl_A	446	Oxidoreductase; rossmann fold, NADPH binding; 1.50	93.85
1n7h_A	381	GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR,	93.75
1udb_A	338	Epimerase, UDP-galactose-4-epimerase; isomerase; H	93.63
3st7_A	369	Capsular polysaccharide synthesis enzyme CAP5F; ro	93.58
1rkx_A	357	CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD;	93.5
1npy_A	271	Hypothetical shikimate 5-dehydrogenase-like protei	93.42
3don_A	277	Shikimate dehydrogenase; alpha-beta structure, ros	93.34
2nu8_A	288	Succinyl-COA ligase [ADP-forming] subunit alpha; c	93.31
1eq2_A	310	ADP-L-glycero-D-mannoheptose 6-epimerase; N-termin	93.13
2ho3_A	325	Oxidoreductase, GFO/IDH/MOCA family; streptococcus	93.05
1z45_A	699	GAL10 bifunctional protein; epimerase, mutarotase,	93.02
1db3_A	372	GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lya	92.98
3e9m_A	330	Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA,	92.89
3u9l_A	324	3-oxoacyl-[acyl-carrier-protein] reductase; struct	92.89
3imf_A	257	Short chain dehydrogenase; structural genomics, in	92.85
3phh_A	269	Shikimate dehydrogenase; shikimate pathway, helico	92.83
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	92.66
3u62_A	253	Shikimate dehydrogenase; shikimate pathway, oxidor	92.64
1geg_A	256	Acetoin reductase; SDR family, oxidoreductase; HET	92.55
2yv1_A	294	Succinyl-COA ligase [ADP-forming] subunit alpha; C	92.53
3fbt_A	282	Chorismate mutase and shikimate 5-dehydrogenase fu	92.51
4hkt_A	331	Inositol 2-dehydrogenase; structural genomics, nys	92.47
2rh8_A	338	Anthocyanidin reductase; flavonoids, rossmann fold	92.46
3pk0_A	262	Short-chain dehydrogenase/reductase SDR; ssgcid, s	92.42
4e6p_A	259	Probable sorbitol dehydrogenase (L-iditol 2-dehyd;	92.39
1yo6_A	250	Putative carbonyl reductase sniffer; tyrosine-depe	92.38
3i4f_A	264	3-oxoacyl-[acyl-carrier protein] reductase; struct	92.35
2p4h_X	322	Vestitone reductase; NADPH-dependent reductase, is	92.3
3ak4_A	263	NADH-dependent quinuclidinone reductase; SDR, (R)-	92.24
1y1p_A	342	ARII, aldehyde reductase II; rossmann fold, short	92.19
2p2s_A	336	Putative oxidoreductase; YP_050235.1, structural g	92.13
3e82_A	364	Putative oxidoreductase; NAD, GFO/IDH/MOCA family,	92.12
3euw_A	344	MYO-inositol dehydrogenase; protein structure init	92.11
3ai3_A	263	NADPH-sorbose reductase; rossmann-fold, NADPH-depe	92.1
3sx2_A	278	Putative 3-ketoacyl-(acyl-carrier-protein) reduct;	91.99
3r1i_A	276	Short-chain type dehydrogenase/reductase; structur	91.97
2o23_A	265	HADH2 protein; HSD17B10, schad, ERAB, type II HADH	91.87
3uve_A	286	Carveol dehydrogenase ((+)-trans-carveol dehydrog;	91.82
3o9z_A	312	Lipopolysaccaride biosynthesis protein WBPB; oxido	91.81
3tpc_A	257	Short chain alcohol dehydrogenase-related dehydro;	91.79
3afn_B	258	Carbonyl reductase; alpha/beta/alpha, rossmann-fol	91.79
1wma_A	276	Carbonyl reductase [NADPH] 1; oxidoreductase; HET:	91.68
1tlt_A	319	Putative oxidoreductase (virulence factor MVIM HO;	91.68
3p19_A	266	BFPVVD8, putative blue fluorescent protein; rossma	91.67
3e18_A	359	Oxidoreductase; dehydrogenase, NAD-binding, struct	91.67
4dqv_A	478	Probable peptide synthetase NRP (peptide synthase;	91.65
2a35_A	215	Hypothetical protein PA4017; alpha-beta-alpha sand	91.6
3awd_A	260	GOX2181, putative polyol dehydrogenase; oxidoreduc	91.58
3cea_A	346	MYO-inositol 2-dehydrogenase; NP_786804.1, oxidore	91.57
2pnf_A	248	3-oxoacyl-[acyl-carrier-protein] reductase; short	91.57
2z1n_A	260	Dehydrogenase; reductase, SDR, oxidoreductase; 1.8	91.51
2d5c_A	263	AROE, shikimate 5-dehydrogenase; substrate, dimer,	91.5
2hk9_A	275	Shikimate dehydrogenase; shikimate pathway, drug d	91.5
2x6t_A	357	ADP-L-glycero-D-manno-heptose-6-epimerase; isomera	91.5
3t4e_A	312	Quinate/shikimate dehydrogenase; structural genomi	91.48
3evn_A	329	Oxidoreductase, GFO/IDH/MOCA family; structural ge	91.47
2uvd_A	246	3-oxoacyl-(acyl-carrier-protein) reductase; beta-k	91.46
2hq1_A	247	Glucose/ribitol dehydrogenase; CTH-1438, structura	91.37
2glx_A	332	1,5-anhydro-D-fructose reductase; NADP(H) dependen	91.36
1p77_A	272	Shikimate 5-dehydrogenase; NADPH, oxidoreductase;	91.33
3c1a_A	315	Putative oxidoreductase; ZP_00056571.1, oxidoreduc	91.3
3a28_C	258	L-2.3-butanediol dehydrogenase; chiral substrate r	91.27
2cfc_A	250	2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidor	91.27
1fmc_A	255	7 alpha-hydroxysteroid dehydrogenase; short-chain	91.24
4dyv_A	272	Short-chain dehydrogenase/reductase SDR; structura	91.24
3pxx_A	287	Carveol dehydrogenase; structural genomics, seattl	91.22
3tjr_A	301	Short chain dehydrogenase; structural genomics, se	91.21
2q2v_A	255	Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidore	91.18
4fc7_A	277	Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossman	91.14
3rwb_A	247	TPLDH, pyridoxal 4-dehydrogenase; short chain dehy	91.1
2ixa_A	444	Alpha-N-acetylgalactosaminidase; NAD, A-ECO conver	91.06
3q2i_A	354	Dehydrogenase; rossmann fold, UDP-sugar binding, N	91.06
1spx_A	278	Short-chain reductase family member (5L265); paral	91.04
2yv2_A	297	Succinyl-COA synthetase alpha chain; COA-binding d	91.02
2bd0_A	244	Sepiapterin reductase; oxidoreductase; HET: NAP BI	90.99
3e03_A	274	Short chain dehydrogenase; structural genomics, PS	90.99
4dqx_A	277	Probable oxidoreductase protein; structural genomi	90.96
3moi_A	387	Probable dehydrogenase; structural genomics, PSI2,	90.96
3l77_A	235	Short-chain alcohol dehydrogenase; oxidoreductase;	90.95
2yut_A	207	Putative short-chain oxidoreductase; alpha and bet	90.94
3cxt_A	291	Dehydrogenase with different specificities; rossma	90.89
3un1_A	260	Probable oxidoreductase; structural genomics, PSI-	90.84
1yxm_A	303	Pecra, peroxisomal trans 2-enoyl COA reductase; pe	90.84
4e4y_A	244	Short chain dehydrogenase family protein; structur	90.84
3osu_A	246	3-oxoacyl-[acyl-carrier-protein] reductase; struct	90.82
3uuw_A	308	Putative oxidoreductase with NAD(P)-binding rossm	90.82
3h8v_A	292	Ubiquitin-like modifier-activating enzyme 5; rossm	90.79
1nyt_A	271	Shikimate 5-dehydrogenase; alpha/beta domains, WID	90.78
3s55_A	281	Putative short-chain dehydrogenase/reductase; stru	90.78
2hrz_A	342	AGR_C_4963P, nucleoside-diphosphate-sugar epimeras	90.76
3ehe_A	313	UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC,	90.76
2bgk_A	278	Rhizome secoisolariciresinol dehydrogenase; oxidor	90.67
2pd6_A	264	Estradiol 17-beta-dehydrogenase 8; short-chain deh	90.67
3m1a_A	281	Putative dehydrogenase; short, PSI, MCSG, structur	90.63
1iy8_A	267	Levodione reductase; oxidoreductase; HET: NAD; 1.6	90.59
3ksu_A	262	3-oxoacyl-acyl carrier protein reductase; structur	90.59
3gdo_A	358	Uncharacterized oxidoreductase YVAA; structural ge	90.53
3rc1_A	350	Sugar 3-ketoreductase; sugar biosynthesis, TDP bin	90.5
3o38_A	266	Short chain dehydrogenase; tuberculosis, ortholog	90.49
2dtx_A	264	Glucose 1-dehydrogenase related protein; rossmann	90.49
1zk4_A	251	R-specific alcohol dehydrogenase; short chain redu	90.48
3gaf_A	256	7-alpha-hydroxysteroid dehydrogenase; seattle stru	90.46
1z7e_A	660	Protein aRNA; rossmann fold, OB-like fold, hydrola	90.46
3asu_A	248	Short-chain dehydrogenase/reductase SDR; SDR famil	90.45
1sny_A	267	Sniffer CG10964-PA; alpha and beta protein, rossma	90.42
3pgx_A	280	Carveol dehydrogenase; structural genomics, seattl	90.39
3ioy_A	319	Short-chain dehydrogenase/reductase SDR; structura	90.37
3kux_A	352	Putative oxidoreductase; oxidoreductase family, cs	90.35
2jah_A	247	Clavulanic acid dehydrogenase; short-chain dehydro	90.34
1nff_A	260	Putative oxidoreductase RV2002; directed evolution	90.32
3oid_A	258	Enoyl-[acyl-carrier-protein] reductase [NADPH]; fa	90.32
3ezy_A	344	Dehydrogenase; structural genomics, unknown functi	90.31
2ew8_A	249	(S)-1-phenylethanol dehydrogenase; transferase; 2.	90.28
3db2_A	354	Putative NADPH-dependent oxidoreductase; two domai	90.27
1hxh_A	253	3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-b	90.27
3f4l_A	345	Putative oxidoreductase YHHX; structural genomics,	90.24
2h7i_A	269	Enoyl-[acyl-carrier-protein] reductase [NADH]; oxi	90.23
3gk3_A	269	Acetoacetyl-COA reductase; acetoacetyl-CO reductas	90.18
3tl3_A	257	Short-chain type dehydrogenase/reductase; ssgcid,	90.18
3lyl_A	247	3-oxoacyl-(acyl-carrier-protein) reductase; alpha	90.17
3qiv_A	253	Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR	90.11
3nzo_A	399	UDP-N-acetylglucosamine 4,6-dehydratase; structura	90.1
1yb1_A	272	17-beta-hydroxysteroid dehydrogenase type XI; shor	90.08
3gvc_A	277	Oxidoreductase, probable short-chain type dehydrog	90.08
1vl8_A	267	Gluconate 5-dehydrogenase; TM0441, structural geno	90.06
1edo_A	244	Beta-keto acyl carrier protein reductase; nucleoti	90.06
3fhl_A	362	Putative oxidoreductase; NAD-binding domain, PSI-2	90.05
1gee_A	261	Glucose 1-dehydrogenase; short-chain dehydrogenase	90.04
3o26_A	311	Salutaridine reductase; short chain dehydrogenase/	90.02
3i23_A	349	Oxidoreductase, GFO/IDH/MOCA family; structural ge	89.98
4dmm_A	269	3-oxoacyl-[acyl-carrier-protein] reductase; rossma	89.96
2nwq_A	272	Probable short-chain dehydrogenase; oxidoreductase	89.96
3rd5_A	291	Mypaa.01249.C; ssgcid, structural genomics, seattl	89.92
1hdc_A	254	3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxi	89.91
1x1t_A	260	D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, S	89.89
3v2h_A	281	D-beta-hydroxybutyrate dehydrogenase; structural g	89.89
3ucx_A	264	Short chain dehydrogenase; ssgcid, seattle structu	89.88
3grp_A	266	3-oxoacyl-(acyl carrierprotein) reductase; structu	89.87
3svt_A	281	Short-chain type dehydrogenase/reductase; ssgcid,	89.84
3guy_A	230	Short-chain dehydrogenase/reductase SDR; structura	89.83
3v2g_A	271	3-oxoacyl-[acyl-carrier-protein] reductase; struct	89.81
3sc4_A	285	Short chain dehydrogenase (A0QTM2 homolog); ssgcid	89.78
2rhc_B	277	Actinorhodin polyketide ketoreductase; oxidoreduct	89.74
3n74_A	261	3-ketoacyl-(acyl-carrier-protein) reductase; seatt	89.71
1w6u_A	302	2,4-dienoyl-COA reductase, mitochondrial precursor	89.69
3qy9_A	243	DHPR, dihydrodipicolinate reductase; rossmann fold	89.69
3d7l_A	202	LIN1944 protein; APC89317, structural genomics, PS	89.68
3t7c_A	299	Carveol dehydrogenase; structural genomics, seattl	89.64
3ftp_A	270	3-oxoacyl-[acyl-carrier protein] reductase; ssgcid	89.61
3ing_A	325	Homoserine dehydrogenase; NP_394635.1, structural	89.61
4egf_A	266	L-xylulose reductase; structural genomics, ssgcid,	89.6
4f6c_A	427	AUSA reductase domain protein; thioester reductase	89.58
1ja9_A	274	4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; p	89.58
1zem_A	262	Xylitol dehydrogenase; rossmann fold, dinucleotide	89.56
1xg5_A	279	ARPG836; short chain dehydrogenase, human, SGC, st	89.55
2ae2_A	260	Protein (tropinone reductase-II); oxidoreductase,	89.52
3op4_A	248	3-oxoacyl-[acyl-carrier protein] reductase; 3-keto	89.51
4ibo_A	271	Gluconate dehydrogenase; enzyme function initiativ	89.51
3ohs_X	334	Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; d	89.49
1lu9_A	287	Methylene tetrahydromethanopterin dehydrogenase; a	89.48
4iiu_A	267	3-oxoacyl-[acyl-carrier protein] reductase; struct	89.45
2fwm_X	250	2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; e	89.45
1xkq_A	280	Short-chain reductase family member (5D234); parra	89.42
3sju_A	279	Keto reductase; short-chain dehydrogenase, oxidore	89.4
3dty_A	398	Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetram	89.39
1uls_A	245	Putative 3-oxoacyl-acyl carrier protein reductase;	89.39
3is3_A	270	17BETA-hydroxysteroid dehydrogenase; short chain d	89.32
1oi7_A	288	Succinyl-COA synthetase alpha chain; SCS, ligase,	89.3
3d3w_A	244	L-xylulose reductase; uronate cycle, short-chain d	89.3
3oec_A	317	Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO;	89.29
3tzq_B	271	Short-chain type dehydrogenase/reductase; ssgcid,	89.28
2gdz_A	267	NAD+-dependent 15-hydroxyprostaglandin dehydrogen;	89.24
1ydw_A	362	AX110P-like protein; structural genomics, protein	89.23
4da9_A	280	Short-chain dehydrogenase/reductase; structural ge	89.22
3gdg_A	267	Probable NADP-dependent mannitol dehydrogenase; ro	89.22
3kzv_A	254	Uncharacterized oxidoreductase YIR035C; cytoplasmi	89.21
2ehd_A	234	Oxidoreductase, oxidoreductase, short-chain dehydr	89.1
3rih_A	293	Short chain dehydrogenase or reductase; structural	89.08
3grk_A	293	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	89.01
3v8b_A	283	Putative dehydrogenase, possibly 3-oxoacyl-[acyl-	88.98
3dii_A	247	Short-chain dehydrogenase/reductase SDR; SCOR, ros	88.95
3oa2_A	318	WBPB; oxidoreductase, sugar biosynthesis, dehydrog	88.93
3u5t_A	267	3-oxoacyl-[acyl-carrier-protein] reductase; struct	88.92
2zat_A	260	Dehydrogenase/reductase SDR family member 4; alpha	88.92
1cyd_A	244	Carbonyl reductase; short-chain dehydrogenase, oxi	88.91
1h5q_A	265	NADP-dependent mannitol dehydrogenase; oxidoreduct	88.88
3tfo_A	264	Putative 3-oxoacyl-(acyl-carrier-protein) reducta;	88.88
3ek2_A	271	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	88.88
4iin_A	271	3-ketoacyl-acyl carrier protein reductase (FABG);	88.85
3ko8_A	312	NAD-dependent epimerase/dehydratase; isomerase, UD	88.82
3v5n_A	417	Oxidoreductase; structural genomics, PSI-biology,	88.79
3nrc_A	280	Enoyl-[acyl-carrier-protein] reductase (NADH); ros	88.78
1xea_A	323	Oxidoreductase, GFO/IDH/MOCA family; structural ge	88.77
3ctm_A	279	Carbonyl reductase; alcohol dehydrogenase, short-c	88.77
3edm_A	259	Short chain dehydrogenase; structural genomics, ox	88.74
1sby_A	254	Alcohol dehydrogenase; ternary complex, NAD, trifl	88.67
4e3z_A	272	Putative oxidoreductase protein; PSI-biology, stru	88.63
3mz0_A	344	Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd;	88.63
3tsc_A	277	Putative oxidoreductase; structural genomics, seat	88.61
1mxh_A	276	Pteridine reductase 2; SDR topology, protein-subst	88.59
3h7a_A	252	Short chain dehydrogenase; oxidoreductase, PSI-2,	88.58
3nyw_A	250	Putative oxidoreductase; fatty acid synthesis,3-ox	88.54
4dry_A	281	3-oxoacyl-[acyl-carrier-protein] reductase; struct	88.49
1xhl_A	297	Short-chain dehydrogenase/reductase family member	88.49
3oig_A	266	Enoyl-[acyl-carrier-protein] reductase [NADH]; fat	88.46
2a4k_A	263	3-oxoacyl-[acyl carrier protein] reductase; reduct	88.46
2p91_A	285	Enoyl-[acyl-carrier-protein] reductase [NADH]; NAD	88.44
2wyu_A	261	Enoyl-[acyl carrier protein] reductase; oxidoreduc	88.43
1uay_A	242	Type II 3-hydroxyacyl-COA dehydrogenase; beta oxid	88.41
3tox_A	280	Short chain dehydrogenase; structural genomics, PS	88.41
2b4q_A	276	Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier	88.31
1nvt_A	287	Shikimate 5'-dehydrogenase; structural genomics, P	88.27
3l6e_A	235	Oxidoreductase, short-chain dehydrogenase/reducta;	88.22
3ngf_A	269	AP endonuclease, family 2; structural genomics, se	88.22
1jtv_A	327	17 beta-hydroxysteroid dehydrogenase type 1; stero	88.2
1ae1_A	273	Tropinone reductase-I; oxidoreductase, tropane alk	88.17
3ijr_A	291	Oxidoreductase, short chain dehydrogenase/reducta;	88.09
3gem_A	260	Short chain dehydrogenase; structural genomics, AP	88.07
3ezl_A	256	Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA	88.06
4f6l_B	508	AUSA reductase domain protein; thioester reductase	88.05
1yde_A	270	Retinal dehydrogenase/reductase 3; oxidoreductase,	88.03
3vtz_A	269	Glucose 1-dehydrogenase; rossmann fold, oxidoreduc	87.97
4h3v_A	390	Oxidoreductase domain protein; structural genomics	87.93
3k31_A	296	Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI	87.85
3rkr_A	262	Short chain oxidoreductase; rossmann fold; HET: NA	87.84
1lc0_A	294	Biliverdin reductase A; oxidoreductase, tetrapyrro	87.81
1cf2_P	337	Protein (glyceraldehyde-3-phosphate dehydrogenase)	87.75
3pwz_A	272	Shikimate dehydrogenase 3; alpha-beta, oxidoreduct	87.72
1zud_1	251	Adenylyltransferase THIF; thiamin, thiazole, prote	87.7
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	87.54
1qsg_A	265	Enoyl-[acyl-carrier-protein] reductase; enoyl redu	87.51
3kvo_A	346	Hydroxysteroid dehydrogenase-like protein 2; HSDL2	87.49
2ph3_A	245	3-oxoacyl-[acyl carrier protein] reductase; TTHA04	87.45
2c07_A	285	3-oxoacyl-(acyl-carrier protein) reductase; oxidor	87.43
2d1y_A	256	Hypothetical protein TT0321; strucrtural genomics,	87.38
3lf2_A	265	Short chain oxidoreductase Q9HYA2; SDR, SCOR, ross	87.3
1g0o_A	283	Trihydroxynaphthalene reductase; protein-NADPH-act	87.29
3zv4_A	281	CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; ox	87.26
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	87.24
2x9g_A	288	PTR1, pteridine reductase; short chain dehydrogena	87.22
1id1_A	153	Putative potassium channel protein; RCK domain, E.	87.16
4fb5_A	393	Probable oxidoreductase protein; PSI-biology, nysg	87.16
1xq1_A	266	Putative tropinone reducatse; structural genomics,	87.04
1zh8_A	340	Oxidoreductase; TM0312, structural genomics, JO ce	87.01
3ius_A	286	Uncharacterized conserved protein; APC63810, silic	87.0
3oqb_A	383	Oxidoreductase; structural genomics, protein struc	86.94
4gqa_A	412	NAD binding oxidoreductase; structural genomics, P	86.93
1r0k_A	388	1-deoxy-D-xylulose 5-phosphate reductoisomerase; N	86.77
2nm0_A	253	Probable 3-oxacyl-(acyl-carrier-protein) reductas;	86.71
3rku_A	287	Oxidoreductase YMR226C; substrate fingerprint, sho	86.66
3do5_A	327	HOM, homoserine dehydrogenase; NP_069768.1, putati	86.58
3ec7_A	357	Putative dehydrogenase; alpha-beta, structural gen	86.51
2pd4_A	275	Enoyl-[acyl-carrier-protein] reductase [NADH]; ant	86.37
2ag5_A	246	DHRS6, dehydrogenase/reductase (SDR family) member	86.22
3qlj_A	322	Short chain dehydrogenase; structural genomics, se	86.16
1h6d_A	433	Precursor form of glucose-fructose oxidoreductase;	85.97
4fs3_A	256	Enoyl-[acyl-carrier-protein] reductase [NADPH] FA;	85.94
4b79_A	242	PA4098, probable short-chain dehydrogenase; oxidor	85.91
3f9i_A	249	3-oxoacyl-[acyl-carrier-protein] reductase; 3-keto	85.86
3t4x_A	267	Oxidoreductase, short chain dehydrogenase/reducta;	85.68
3r3s_A	294	Oxidoreductase; structural genomics, csgid, center	85.58
1gr0_A	367	Inositol-3-phosphate synthase; isomerase, oxidored	85.55
4ew6_A	330	D-galactose-1-dehydrogenase protein; nysgrc, PSI-b	85.5
2qq5_A	260	DHRS1, dehydrogenase/reductase SDR family member 1	85.46
3uf0_A	273	Short-chain dehydrogenase/reductase SDR; gluconate	85.43
2aef_A	234	Calcium-gated potassium channel MTHK; rossmann fol	85.27
4eso_A	255	Putative oxidoreductase; NADP, structural genomics	85.24
3f1l_A	252	Uncharacterized oxidoreductase YCIK; E. coli, NADP	85.19
4imr_A	275	3-oxoacyl-(acyl-carrier-protein) reductase; oxidor	85.15
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	85.05
2wsb_A	254	Galactitol dehydrogenase; oxidoreductase, SDR, ros	85.03
3obe_A	305	Sugar phosphate isomerase/epimerase; structural ge	84.82
3pef_A	287	6-phosphogluconate dehydrogenase, NAD-binding; gam	84.65
3dmy_A	480	Protein FDRA; predicted actyl-COA synthetase, nysg	84.49
1oaa_A	259	Sepiapterin reductase; tetrahydrobiopterin, oxidor	84.43
1f6y_A	262	5-methyltetrahydrofolate corrinoid/iron sulfur PR	84.38
2z5l_A	511	Tylkr1, tylactone synthase starter module and modu	84.19
2b69_A	343	UDP-glucuronate decarboxylase 1; UDP-glucoronic ac	84.05
1b7g_O	340	Protein (glyceraldehyde 3-phosphate dehydrogenase;	83.86
1vjp_A	394	MYO-inositol-1-phosphate synthase-related protein;	83.8
2duw_A	145	Putative COA-binding protein; ligand binding prote	83.63
1xu9_A	286	Corticosteroid 11-beta-dehydrogenase, isozyme 1; h	83.5
1e7w_A	291	Pteridine reductase; dihydrofolate reductase, shor	83.48
3mtj_A	444	Homoserine dehydrogenase; rossmann-fold, PSI, MCSG	83.38
4fn4_A	254	Short chain dehydrogenase; NADH-binding, rossmann	83.18
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	83.16
2ozp_A	345	N-acetyl-gamma-glutamyl-phosphate reductase; amino	83.16
4had_A	350	Probable oxidoreductase protein; structural genomi	83.13
3c85_A	183	Putative glutathione-regulated potassium-efflux S	83.09
3ip3_A	337	Oxidoreductase, putative; structural genomics, PSI	82.88
1dhr_A	241	Dihydropteridine reductase; oxidoreductase(acting	82.85
2q02_A	272	Putative cytoplasmic protein; structural genomics,	82.65
1tx2_A	297	DHPS, dihydropteroate synthase; folate biosynthesi	82.65
2d59_A	144	Hypothetical protein PH1109; COA binding, structur	82.62
2fr1_A	486	Erythromycin synthase, eryai; short chain dehydrog	82.37
3o8q_A	281	Shikimate 5-dehydrogenase I alpha; structural geno	82.19
1t4b_A	367	Aspartate-semialdehyde dehydrogenase; asadh, HOSR,	82.16
3p6l_A	262	Sugar phosphate isomerase/epimerase; TIM barrel, s	82.06
2rir_A	300	Dipicolinate synthase, A chain; structural genomic	81.99
4e38_A	232	Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho	81.75
3h5n_A	353	MCCB protein; ubiquitin-activating enzyme, microci	81.73
3dx5_A	286	Uncharacterized protein ASBF; beta-alpha barrel, p	81.71
1k77_A	260	EC1530, hypothetical protein YGBM; TIM barrel, str	81.68
1uzm_A	247	3-oxoacyl-[acyl-carrier protein] reductase; beta-k	81.62
2fp4_A	305	Succinyl-COA ligase [GDP-forming] alpha-chain, mit	81.55
3m2t_A	359	Probable dehydrogenase; PSI, SGXNY, structural gen	81.54
2qhx_A	328	Pteridine reductase 1; oxidoreductase, short-chain	81.47
3vni_A	294	Xylose isomerase domain protein TIM barrel; D-psic	81.34
1ooe_A	236	Dihydropteridine reductase; structural genomics, P	81.33
4gkb_A	258	3-oxoacyl-[acyl-carrier protein] reductase; putati	81.09
3l23_A	303	Sugar phosphate isomerase/epimerase; structural ge	80.92
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	80.81
3ged_A	247	Short-chain dehydrogenase/reductase SDR; SCOR, ros	80.78
3l6d_A	306	Putative oxidoreductase; structural genomics, prot	80.62
4g81_D	255	Putative hexonate dehydrogenase; enzyme function i	80.24

>3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}

Probab=99.84  E-value=5.2e-21  Score=156.79  Aligned_cols=96  Identities=17%  Similarity=0.216  Sum_probs=88.1

Q ss_pred             CCcceEEeeCCCHHHHHHHHhcCcEEEecCCCccchhHHHHHHHHHcCCCeeeCCCChHHHHHHHHHhHHHHHhCCCEEE
Q psy12849         30 RTNRTTVVNTINESSILIMAKKCRVILNCVGPYTWYGEAVVKACIEAKTHHVDITGEPYFMEYMQYEYNTRAQESEVCVV  109 (138)
Q Consensus        30 ~~~~~~~~D~~d~~~L~~~~~~~dvVIn~~GPf~~~~~~v~~Aci~~g~hYvDisge~~~~~~~~~~~~~~A~~~gv~iv  109 (138)
                      .....+.+|+.|.++|.++++++|+||||+|||+  +.+++++|+++|+||||+|++++++    .+++++|+++|++++
T Consensus        56 ~~~~~~~~d~~d~~~l~~~~~~~DvVi~~~p~~~--~~~v~~~~~~~g~~yvD~s~~~~~~----~~l~~~a~~~g~~~i  129 (365)
T 3abi_A           56 EFATPLKVDASNFDKLVEVMKEFELVIGALPGFL--GFKSIKAAIKSKVDMVDVSFMPENP----LELRDEAEKAQVTIV  129 (365)
T ss_dssp             TTSEEEECCTTCHHHHHHHHTTCSEEEECCCGGG--HHHHHHHHHHHTCEEEECCCCSSCG----GGGHHHHHHTTCEEE
T ss_pred             ccCCcEEEecCCHHHHHHHHhCCCEEEEecCCcc--cchHHHHHHhcCcceEeeeccchhh----hhhhhhhccCCceee
Confidence            3567789999999999999999999999998874  5699999999999999999998875    467899999999999


Q ss_pred             eCCCCccchHhHHHHHHHHHhh
Q psy12849        110 SACGIETLPIDMGVLMLQDSFE  131 (138)
Q Consensus       110 ~~~G~d~~p~dl~~~~~~~~~~  131 (138)
                      ++|||||+++++++.++.++++
T Consensus       130 ~~~G~~PG~~~~~a~~~~~~~~  151 (365)
T 3abi_A          130 FDAGFAPGLSNILMGRIFQELD  151 (365)
T ss_dssp             CCCBTTTBHHHHHHHHHHHHSC
T ss_pred             ecCCCCCchHHHHHHHHHHhcc
Confidence            9999999999999999999985

>4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes}

Probab=99.56  E-value=6.5e-15  Score=122.69  Aligned_cols=98  Identities=15%  Similarity=0.189  Sum_probs=85.4

Q ss_pred             CCcceEEeeCCCHHHHHHHHhc--CcEEEecCCCccchhHHHHHHHHHcCCCeeeCCCChHH-----HHHHHHHhHHHHH
Q psy12849         30 RTNRTTVVNTINESSILIMAKK--CRVILNCVGPYTWYGEAVVKACIEAKTHHVDITGEPYF-----MEYMQYEYNTRAQ  102 (138)
Q Consensus        30 ~~~~~~~~D~~d~~~L~~~~~~--~dvVIn~~GPf~~~~~~v~~Aci~~g~hYvDisge~~~-----~~~~~~~~~~~A~  102 (138)
                      .++..+.+|+.|++++.+++++  +|+||||+||+..  .+++++|+++|+||+|+++..+.     ......++++.|+
T Consensus        53 ~~~~~~~~D~~d~~~l~~~l~~~~~DvVin~ag~~~~--~~v~~a~l~~g~~vvD~a~~~~~~~~~~~~~~~~~l~~~a~  130 (405)
T 4ina_A           53 GEIDITTVDADSIEELVALINEVKPQIVLNIALPYQD--LTIMEACLRTGVPYLDTANYEHPDLAKFEYKEQWAFHDRYK  130 (405)
T ss_dssp             CCCEEEECCTTCHHHHHHHHHHHCCSEEEECSCGGGH--HHHHHHHHHHTCCEEESSCCBCTTCSCBCSHHHHTTHHHHH
T ss_pred             CceEEEEecCCCHHHHHHHHHhhCCCEEEECCCcccC--hHHHHHHHHhCCCEEEecCCCCcccchhhhHHHHHHHHHHH
Confidence            3678899999999999999999  8999999998763  68999999999999999775432     1223358889999


Q ss_pred             hCCCEEEeCCCCccchHhHHHHHHHHH
Q psy12849        103 ESEVCVVSACGIETLPIDMGVLMLQDS  129 (138)
Q Consensus       103 ~~gv~iv~~~G~d~~p~dl~~~~~~~~  129 (138)
                      ++|+++++++||+|+++++++.+++++
T Consensus       131 ~aG~~~i~g~G~~PG~~~l~a~~~~~~  157 (405)
T 4ina_A          131 EKGVMALLGSGFDPGVTNVFCAYAQKH  157 (405)
T ss_dssp             HHTCEEEECCBTTTBHHHHHHHHHHHH
T ss_pred             HhCCEEEEcCCCCccHHHHHHHHHHHh
Confidence            999999999999999999999999987

>2ph5_A Homospermidine synthase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: NAD; 2.50A {Legionella pneumophila subsp}

Probab=99.28  E-value=2.4e-12  Score=110.16  Aligned_cols=99  Identities=8%  Similarity=0.011  Sum_probs=73.8

Q ss_pred             cceEEeeCCCHHH-HHHHHhcCcEEEecCCCccchhHHHHHHHHHcCCCeeeCCCChH--HH------------HHHHHH
Q psy12849         32 NRTTVVNTINESS-ILIMAKKCRVILNCVGPYTWYGEAVVKACIEAKTHHVDITGEPY--FM------------EYMQYE   96 (138)
Q Consensus        32 ~~~~~~D~~d~~~-L~~~~~~~dvVIn~~GPf~~~~~~v~~Aci~~g~hYvDisge~~--~~------------~~~~~~   96 (138)
                      +...++|..|.++ +.+++++.|+|||++ |++ ...+++++|+++|+||+|++.|+.  +.            ..+.+.
T Consensus        63 ~~~~~Vdadnv~~~l~aLl~~~DvVIN~s-~~~-~~l~Im~acleaGv~YlDTa~E~~~p~~~~~~~~p~~~~~Y~~~~~  140 (480)
T 2ph5_A           63 FKLQQITPQNYLEVIGSTLEENDFLIDVS-IGI-SSLALIILCNQKGALYINAATEPWKEEFVMEKMALNRRTNYSLREE  140 (480)
T ss_dssp             EEECCCCTTTHHHHTGGGCCTTCEEEECC-SSS-CHHHHHHHHHHHTCEEEESSCCCCCC----------CCCHHHHHHH
T ss_pred             eeEEeccchhHHHHHHHHhcCCCEEEECC-ccc-cCHHHHHHHHHcCCCEEECCCCcccccccccccCcchhhhHHHHHH
Confidence            4444555666645 667888889999988 544 336899999999999999998641  11            133455


Q ss_pred             hHHHHHh-CCCEEEeCCCCccchHhHHHHHHHHHhhhh
Q psy12849         97 YNTRAQE-SEVCVVSACGIETLPIDMGVLMLQDSFEGH  133 (138)
Q Consensus        97 ~~~~A~~-~gv~iv~~~G~d~~p~dl~~~~~~~~~~~~  133 (138)
                      +.+.+++ +| +.+++|||+|+-.+..+.+++.++.+.
T Consensus       141 ~~~~~~~~~G-tAilg~G~nPGvvsvf~~~Al~~la~d  177 (480)
T 2ph5_A          141 VLRLKDKTQK-TALITHGANPGLVSHFIKEALLNIAKD  177 (480)
T ss_dssp             HHTTTTTCCS-CEECSCBTTTBHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHhcCC-cEEecCCCCccHHHHHHHHHHHhHhhh
Confidence            6666655 68 999999999999999998888887544

>2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae}

Probab=99.20  E-value=8.5e-11  Score=99.96  Aligned_cols=94  Identities=14%  Similarity=0.129  Sum_probs=80.9

Q ss_pred             CcceEEeeCCCHHHHHHHHhcCcEEEecCCCccchhHHHHHHHHHcCCCeeeCCCChHHHHHHHHHhHHHHHhCCCEEEe
Q psy12849         31 TNRTTVVNTINESSILIMAKKCRVILNCVGPYTWYGEAVVKACIEAKTHHVDITGEPYFMEYMQYEYNTRAQESEVCVVS  110 (138)
Q Consensus        31 ~~~~~~~D~~d~~~L~~~~~~~dvVIn~~GPf~~~~~~v~~Aci~~g~hYvDisge~~~~~~~~~~~~~~A~~~gv~iv~  110 (138)
                      .+..+.+|+.|.+++.++++++|+||||+|++. . ..+.++|++.|+||+|++...+..    ..+.+.|+++|+++++
T Consensus        68 ~~~~~~~D~~d~~~l~~~l~~~DvVIn~tp~~~-~-~~v~~a~l~~g~~vvd~~~~~p~~----~~Ll~~Ak~aGv~~i~  141 (467)
T 2axq_A           68 GSKAISLDVTDDSALDKVLADNDVVISLIPYTF-H-PNVVKSAIRTKTDVVTSSYISPAL----RELEPEIVKAGITVMN  141 (467)
T ss_dssp             TCEEEECCTTCHHHHHHHHHTSSEEEECSCGGG-H-HHHHHHHHHHTCEEEECSCCCHHH----HHHHHHHHHHTCEEEC
T ss_pred             CCcEEEEecCCHHHHHHHHcCCCEEEECCchhh-h-HHHHHHHHhcCCEEEEeecCCHHH----HHHHHHHHHcCCEEEe
Confidence            456778999999999999999999999997653 3 368999999999999998866664    3566889999999999


Q ss_pred             CCCCccchHhHHHHHHHHHh
Q psy12849        111 ACGIETLPIDMGVLMLQDSF  130 (138)
Q Consensus       111 ~~G~d~~p~dl~~~~~~~~~  130 (138)
                      ++|++|++..+.+..+.+++
T Consensus       142 g~G~~PG~~~~~a~~li~q~  161 (467)
T 2axq_A          142 EIGLDPGIDHLYAVKTIDEV  161 (467)
T ss_dssp             SCBBTTBHHHHHHHHHHHHH
T ss_pred             cCCcCccchHHHHHHHHHHH
Confidence            99999999999988777776

>1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A

Probab=99.11  E-value=5.7e-10  Score=94.24  Aligned_cols=94  Identities=13%  Similarity=0.165  Sum_probs=79.6

Q ss_pred             CcceEEeeCCCHHHHHHHHhcCcEEEecCCCccchhHHHHHHHHHcCCCeeeCCCChHHHHHHHHHhHHHHHhCCCEEEe
Q psy12849         31 TNRTTVVNTINESSILIMAKKCRVILNCVGPYTWYGEAVVKACIEAKTHHVDITGEPYFMEYMQYEYNTRAQESEVCVVS  110 (138)
Q Consensus        31 ~~~~~~~D~~d~~~L~~~~~~~dvVIn~~GPf~~~~~~v~~Aci~~g~hYvDisge~~~~~~~~~~~~~~A~~~gv~iv~  110 (138)
                      .+..+.+|+.|.+++.++++++|+||||+|++. + ..+.++|++.|+||+|.+...+..    ..+.+.|+++|+.+++
T Consensus        48 ~~~~~~~Dv~d~~~l~~~l~~~DvVIn~a~~~~-~-~~i~~a~l~~g~~vvd~~~~~~~~----~~l~~aA~~aGv~~i~  121 (450)
T 1ff9_A           48 HSTPISLDVNDDAALDAEVAKHDLVISLIPYTF-H-ATVIKSAIRQKKHVVTTSYVSPAM----MELDQAAKDAGITVMN  121 (450)
T ss_dssp             TEEEEECCTTCHHHHHHHHTTSSEEEECCC--C-H-HHHHHHHHHHTCEEEESSCCCHHH----HHTHHHHHHTTCEEEC
T ss_pred             CceEEEeecCCHHHHHHHHcCCcEEEECCcccc-c-hHHHHHHHhCCCeEEEeecccHHH----HHHHHHHHHCCCeEEe
Confidence            356788899999999999999999999997654 3 358899999999999997665554    3566889999999999


Q ss_pred             CCCCccchHhHHHHHHHHHh
Q psy12849        111 ACGIETLPIDMGVLMLQDSF  130 (138)
Q Consensus       111 ~~G~d~~p~dl~~~~~~~~~  130 (138)
                      ++|+++++..+.+.++.++.
T Consensus       122 g~g~~pg~~~~~a~~li~q~  141 (450)
T 1ff9_A          122 EIGLDPGIDHLYAIKTIEEV  141 (450)
T ss_dssp             SCBBTTBHHHHHHHHHHHHH
T ss_pred             CCCCcCchHHHHHHHHHHHh
Confidence            99999999999999888876

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=98.96  E-value=2e-09  Score=72.64  Aligned_cols=70  Identities=14%  Similarity=0.127  Sum_probs=59.8

Q ss_pred             CCcceEEeeCCCHHHHHHHHhcCcEEEecCCCccchhHHHHHHHHHcCCCeeeCCCChHHHHHHHHHhHHHHH
Q psy12849         30 RTNRTTVVNTINESSILIMAKKCRVILNCVGPYTWYGEAVVKACIEAKTHHVDITGEPYFMEYMQYEYNTRAQ  102 (138)
Q Consensus        30 ~~~~~~~~D~~d~~~L~~~~~~~dvVIn~~GPf~~~~~~v~~Aci~~g~hYvDisge~~~~~~~~~~~~~~A~  102 (138)
                      ..+.+...|+.+++++.++++++|+||+|+|+. . ..+++++|++.|++|+|++++.++.+.+. +++++|+
T Consensus        48 ~~~~~~~~d~~~~~~~~~~~~~~d~vi~~~~~~-~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~a~  117 (118)
T 3ic5_A           48 MGVATKQVDAKDEAGLAKALGGFDAVISAAPFF-L-TPIIAKAAKAAGAHYFDLTEDVAATNAVR-ALVEDSQ  117 (118)
T ss_dssp             TTCEEEECCTTCHHHHHHHTTTCSEEEECSCGG-G-HHHHHHHHHHTTCEEECCCSCHHHHHHHH-HHHHCC-
T ss_pred             CCCcEEEecCCCHHHHHHHHcCCCEEEECCCch-h-hHHHHHHHHHhCCCEEEecCcHHHHHHHH-HHHHhhc
Confidence            356788999999999999999999999999543 3 36899999999999999999999988874 7776553

>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*

Probab=97.17  E-value=0.0044  Score=44.48  Aligned_cols=54  Identities=11%  Similarity=0.063  Sum_probs=43.4

Q ss_pred             CCcceEEeeCCCHHHHHHHHhcCcEEEecCCCccc---------hhHHHHHHHHHcCC-CeeeC
Q psy12849         30 RTNRTTVVNTINESSILIMAKKCRVILNCVGPYTW---------YGEAVVKACIEAKT-HHVDI   83 (138)
Q Consensus        30 ~~~~~~~~D~~d~~~L~~~~~~~dvVIn~~GPf~~---------~~~~v~~Aci~~g~-hYvDi   83 (138)
                      .++.++.+|+.|++++.++++++|+|||++|+...         ....++++|.+.|+ ++|=+
T Consensus        46 ~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~v~~  109 (206)
T 1hdo_A           46 RPAHVVVGDVLQAADVDKTVAGQDAVIVLLGTRNDLSPTTVMSEGARNIVAAMKAHGVDKVVAC  109 (206)
T ss_dssp             CCSEEEESCTTSHHHHHHHHTTCSEEEECCCCTTCCSCCCHHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred             CceEEEEecCCCHHHHHHHHcCCCEEEECccCCCCCCccchHHHHHHHHHHHHHHhCCCeEEEE
Confidence            46789999999999999999999999999997642         23577888888776 45433

>3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri}

Probab=97.16  E-value=0.00092  Score=51.99  Aligned_cols=52  Identities=6%  Similarity=-0.014  Sum_probs=44.6

Q ss_pred             CCcceEEeeCCCHHHHHHHHhcCcEEEecCCCcc-chhHHHHHHHHHcC-C-Cee
Q psy12849         30 RTNRTTVVNTINESSILIMAKKCRVILNCVGPYT-WYGEAVVKACIEAK-T-HHV   81 (138)
Q Consensus        30 ~~~~~~~~D~~d~~~L~~~~~~~dvVIn~~GPf~-~~~~~v~~Aci~~g-~-hYv   81 (138)
                      .+++++.+|+.|++++.++++++|+||||+|+.. .....++++|.++| + ++|
T Consensus        56 ~~v~~v~~D~~d~~~l~~a~~~~d~vi~~a~~~~~~~~~~l~~aa~~~g~v~~~v  110 (321)
T 3c1o_A           56 MGVTIIEGEMEEHEKMVSVLKQVDIVISALPFPMISSQIHIINAIKAAGNIKRFL  110 (321)
T ss_dssp             TTCEEEECCTTCHHHHHHHHTTCSEEEECCCGGGSGGGHHHHHHHHHHCCCCEEE
T ss_pred             CCcEEEEecCCCHHHHHHHHcCCCEEEECCCccchhhHHHHHHHHHHhCCccEEe
Confidence            4678999999999999999999999999999763 34578999999998 5 454

>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}

Probab=97.15  E-value=0.00066  Score=50.14  Aligned_cols=54  Identities=6%  Similarity=0.051  Sum_probs=41.6

Q ss_pred             CCcceEEeeCCCHHHHHHHHhcCcEEEecCCCccc----------hhHHHHHHHHHcCC-CeeeC
Q psy12849         30 RTNRTTVVNTINESSILIMAKKCRVILNCVGPYTW----------YGEAVVKACIEAKT-HHVDI   83 (138)
Q Consensus        30 ~~~~~~~~D~~d~~~L~~~~~~~dvVIn~~GPf~~----------~~~~v~~Aci~~g~-hYvDi   83 (138)
                      .+++++++|+.|++++.++++++|+||||+||...          ....++++|.+.|+ ++|=+
T Consensus        46 ~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~a~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~  110 (227)
T 3dhn_A           46 EHLKVKKADVSSLDEVCEVCKGADAVISAFNPGWNNPDIYDETIKVYLTIIDGVKKAGVNRFLMV  110 (227)
T ss_dssp             TTEEEECCCTTCHHHHHHHHTTCSEEEECCCC------CCSHHHHHHHHHHHHHHHTTCSEEEEE
T ss_pred             CceEEEEecCCCHHHHHHHhcCCCEEEEeCcCCCCChhHHHHHHHHHHHHHHHHHHhCCCEEEEe
Confidence            56889999999999999999999999999998631          13467777777775 44443

>3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp}

Probab=97.08  E-value=0.0013  Score=50.37  Aligned_cols=50  Identities=12%  Similarity=-0.009  Sum_probs=42.8

Q ss_pred             CCcceEEeeCCCHHHHHHHHhcCcEEEecCCCccc------hhHHHHHHHHHcCCC
Q psy12849         30 RTNRTTVVNTINESSILIMAKKCRVILNCVGPYTW------YGEAVVKACIEAKTH   79 (138)
Q Consensus        30 ~~~~~~~~D~~d~~~L~~~~~~~dvVIn~~GPf~~------~~~~v~~Aci~~g~h   79 (138)
                      .+++++.+|+.|++++.++++++|+||||+|+...      ....++++|.++|+.
T Consensus        44 ~~v~~~~~D~~d~~~l~~~~~~~d~vi~~a~~~~~~~~~~~~~~~l~~aa~~~gv~   99 (289)
T 3e48_A           44 GKVSVRQLDYFNQESMVEAFKGMDTVVFIPSIIHPSFKRIPEVENLVYAAKQSGVA   99 (289)
T ss_dssp             TTBEEEECCTTCHHHHHHHTTTCSEEEECCCCCCSHHHHHHHHHHHHHHHHHTTCC
T ss_pred             CCCEEEEcCCCCHHHHHHHHhCCCEEEEeCCCCccchhhHHHHHHHHHHHHHcCCC
Confidence            57899999999999999999999999999997532      125789999999863

>2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa}

Probab=97.08  E-value=0.0013  Score=50.51  Aligned_cols=51  Identities=12%  Similarity=0.079  Sum_probs=43.4

Q ss_pred             CCcceEEeeCCCHHHHHHHHhcCcEEEecCCCccc-hhHHHHHHHHHcC-CCe
Q psy12849         30 RTNRTTVVNTINESSILIMAKKCRVILNCVGPYTW-YGEAVVKACIEAK-THH   80 (138)
Q Consensus        30 ~~~~~~~~D~~d~~~L~~~~~~~dvVIn~~GPf~~-~~~~v~~Aci~~g-~hY   80 (138)
                      ..++++.+|+.|++++.++++++|+||||+|+... ....++++|.++| +..
T Consensus        55 ~~v~~v~~D~~d~~~l~~~~~~~d~vi~~a~~~~~~~~~~l~~aa~~~g~v~~  107 (307)
T 2gas_A           55 LGVILLEGDINDHETLVKAIKQVDIVICAAGRLLIEDQVKIIKAIKEAGNVKK  107 (307)
T ss_dssp             TTCEEEECCTTCHHHHHHHHTTCSEEEECSSSSCGGGHHHHHHHHHHHCCCSE
T ss_pred             CCCEEEEeCCCCHHHHHHHHhCCCEEEECCcccccccHHHHHHHHHhcCCceE
Confidence            45789999999999999999999999999997642 3468999999998 543

>1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2

Probab=97.07  E-value=0.0012  Score=51.03  Aligned_cols=52  Identities=12%  Similarity=0.061  Sum_probs=43.8

Q ss_pred             CCcceEEeeCCCHHHHHHHHhcCcEEEecCCCcc-----chhHHHHHHHHHcC-C-Cee
Q psy12849         30 RTNRTTVVNTINESSILIMAKKCRVILNCVGPYT-----WYGEAVVKACIEAK-T-HHV   81 (138)
Q Consensus        30 ~~~~~~~~D~~d~~~L~~~~~~~dvVIn~~GPf~-----~~~~~v~~Aci~~g-~-hYv   81 (138)
                      .+++++++|+.|++++.++++++|+|||++|+..     .....++++|.++| + ++|
T Consensus        55 ~~~~~~~~D~~d~~~l~~~~~~~d~vi~~a~~~~~~~~~~~~~~l~~aa~~~g~v~~~v  113 (313)
T 1qyd_A           55 LGAKLIEASLDDHQRLVDALKQVDVVISALAGGVLSHHILEQLKLVEAIKEAGNIKRFL  113 (313)
T ss_dssp             TTCEEECCCSSCHHHHHHHHTTCSEEEECCCCSSSSTTTTTHHHHHHHHHHSCCCSEEE
T ss_pred             CCeEEEeCCCCCHHHHHHHHhCCCEEEECCccccchhhHHHHHHHHHHHHhcCCCceEE
Confidence            4678999999999999999999999999998752     23468999999998 5 444

>1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2

Probab=97.05  E-value=0.0012  Score=50.82  Aligned_cols=50  Identities=16%  Similarity=0.153  Sum_probs=43.1

Q ss_pred             CCcceEEeeCCCHHHHHHHHhcCcEEEecCCCcc-chhHHHHHHHHHcC-CC
Q psy12849         30 RTNRTTVVNTINESSILIMAKKCRVILNCVGPYT-WYGEAVVKACIEAK-TH   79 (138)
Q Consensus        30 ~~~~~~~~D~~d~~~L~~~~~~~dvVIn~~GPf~-~~~~~v~~Aci~~g-~h   79 (138)
                      .+++++.+|+.|++++.++++++|+||||+|+.. .....++++|.++| +.
T Consensus        56 ~~v~~v~~D~~d~~~l~~~~~~~d~vi~~a~~~~~~~~~~l~~aa~~~g~v~  107 (308)
T 1qyc_A           56 SGANIVHGSIDDHASLVEAVKNVDVVISTVGSLQIESQVNIIKAIKEVGTVK  107 (308)
T ss_dssp             TTCEEECCCTTCHHHHHHHHHTCSEEEECCCGGGSGGGHHHHHHHHHHCCCS
T ss_pred             CCCEEEEeccCCHHHHHHHHcCCCEEEECCcchhhhhHHHHHHHHHhcCCCc
Confidence            4678999999999999999999999999998754 23468999999998 54

>2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A*

Probab=97.03  E-value=0.0013  Score=51.07  Aligned_cols=50  Identities=10%  Similarity=-0.011  Sum_probs=42.9

Q ss_pred             CCcceEEeeCCCHHHHHHHHhcCcEEEecCCCcc-chhHHHHHHHHHcC-CC
Q psy12849         30 RTNRTTVVNTINESSILIMAKKCRVILNCVGPYT-WYGEAVVKACIEAK-TH   79 (138)
Q Consensus        30 ~~~~~~~~D~~d~~~L~~~~~~~dvVIn~~GPf~-~~~~~v~~Aci~~g-~h   79 (138)
                      ..++++++|+.|++++.++++++|+|||++|+.. .....++++|.++| +.
T Consensus        58 ~~v~~v~~Dl~d~~~l~~a~~~~d~vi~~a~~~~~~~~~~l~~aa~~~g~v~  109 (318)
T 2r6j_A           58 LGAIIVKGELDEHEKLVELMKKVDVVISALAFPQILDQFKILEAIKVAGNIK  109 (318)
T ss_dssp             TTCEEEECCTTCHHHHHHHHTTCSEEEECCCGGGSTTHHHHHHHHHHHCCCC
T ss_pred             CCCEEEEecCCCHHHHHHHHcCCCEEEECCchhhhHHHHHHHHHHHhcCCCC
Confidence            4578999999999999999999999999998753 23478999999998 53

>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A*

Probab=96.90  E-value=0.0021  Score=47.50  Aligned_cols=54  Identities=9%  Similarity=-0.028  Sum_probs=44.1

Q ss_pred             CCcceEEeeCCCHHHHHHHHhcCcEEEecCCCccchhHHHHHHHHHcCC-CeeeC
Q psy12849         30 RTNRTTVVNTINESSILIMAKKCRVILNCVGPYTWYGEAVVKACIEAKT-HHVDI   83 (138)
Q Consensus        30 ~~~~~~~~D~~d~~~L~~~~~~~dvVIn~~GPf~~~~~~v~~Aci~~g~-hYvDi   83 (138)
                      .++.++++|+.|++++.++++++|+|||++|+.......++++|.+.|. ++|-+
T Consensus        52 ~~~~~~~~D~~d~~~~~~~~~~~d~vv~~ag~~n~~~~~~~~~~~~~~~~~iv~i  106 (221)
T 3r6d_A           52 ERVTVIEGSFQNPGXLEQAVTNAEVVFVGAMESGSDMASIVKALSRXNIRRVIGV  106 (221)
T ss_dssp             TTEEEEECCTTCHHHHHHHHTTCSEEEESCCCCHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             CceEEEECCCCCHHHHHHHHcCCCEEEEcCCCCChhHHHHHHHHHhcCCCeEEEE
Confidence            5788999999999999999999999999999742225678888888875 55554

>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A}

Probab=96.85  E-value=0.0021  Score=48.20  Aligned_cols=54  Identities=6%  Similarity=0.087  Sum_probs=43.4

Q ss_pred             CCcceEEeeCCCHHHHHHHHhcCcEEEecCCCccc--hhHHHHHHHHHcCC-CeeeC
Q psy12849         30 RTNRTTVVNTINESSILIMAKKCRVILNCVGPYTW--YGEAVVKACIEAKT-HHVDI   83 (138)
Q Consensus        30 ~~~~~~~~D~~d~~~L~~~~~~~dvVIn~~GPf~~--~~~~v~~Aci~~g~-hYvDi   83 (138)
                      .++.++++|+.|++++.++++++|+|||++|+...  ....++++|.+.|+ ++|=+
T Consensus        67 ~~~~~~~~Dl~d~~~~~~~~~~~D~vv~~a~~~~~~~~~~~~~~~~~~~~~~~iV~i  123 (236)
T 3qvo_A           67 TNSQIIMGDVLNHAALKQAMQGQDIVYANLTGEDLDIQANSVIAAMKACDVKRLIFV  123 (236)
T ss_dssp             TTEEEEECCTTCHHHHHHHHTTCSEEEEECCSTTHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             CCcEEEEecCCCHHHHHHHhcCCCEEEEcCCCCchhHHHHHHHHHHHHcCCCEEEEE
Confidence            46889999999999999999999999999987442  23568888888875 34443

>2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET: NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A 2vrc_D

Probab=96.78  E-value=0.0024  Score=48.64  Aligned_cols=54  Identities=19%  Similarity=0.043  Sum_probs=43.6

Q ss_pred             CCcceEEeeCCCHHHHHHHHhcCcEEEecCCCcc------chhHHHHHHHHHcCC-CeeeC
Q psy12849         30 RTNRTTVVNTINESSILIMAKKCRVILNCVGPYT------WYGEAVVKACIEAKT-HHVDI   83 (138)
Q Consensus        30 ~~~~~~~~D~~d~~~L~~~~~~~dvVIn~~GPf~------~~~~~v~~Aci~~g~-hYvDi   83 (138)
                      .+++++.+|+.|++++.++++++|+|||++|+..      .....++++|.+.|+ ++|=+
T Consensus        45 ~~~~~~~~D~~d~~~l~~~~~~~d~vi~~a~~~~~~~~n~~~~~~l~~a~~~~~~~~~v~~  105 (287)
T 2jl1_A           45 QGVEVRHGDYNQPESLQKAFAGVSKLLFISGPHYDNTLLIVQHANVVKAARDAGVKHIAYT  105 (287)
T ss_dssp             TTCEEEECCTTCHHHHHHHTTTCSEEEECCCCCSCHHHHHHHHHHHHHHHHHTTCSEEEEE
T ss_pred             cCCeEEEeccCCHHHHHHHHhcCCEEEEcCCCCcCchHHHHHHHHHHHHHHHcCCCEEEEE
Confidence            3578899999999999999999999999999742      123578999999987 55443

>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A*

Probab=96.73  E-value=0.0035  Score=49.40  Aligned_cols=51  Identities=14%  Similarity=0.089  Sum_probs=43.7

Q ss_pred             CCcceEEeeCCCHHHHHHHHh--cCcEEEecCCCccch-hHHHHHHHHHcC-CCe
Q psy12849         30 RTNRTTVVNTINESSILIMAK--KCRVILNCVGPYTWY-GEAVVKACIEAK-THH   80 (138)
Q Consensus        30 ~~~~~~~~D~~d~~~L~~~~~--~~dvVIn~~GPf~~~-~~~v~~Aci~~g-~hY   80 (138)
                      .+++++..|+.|++++.++++  ++|+||||+|+.... ...++++|.++| +..
T Consensus        60 ~~v~~~~~Dl~d~~~l~~~~~~~~~d~Vi~~a~~~n~~~~~~l~~aa~~~g~v~~  114 (346)
T 3i6i_A           60 KGAIIVYGLINEQEAMEKILKEHEIDIVVSTVGGESILDQIALVKAMKAVGTIKR  114 (346)
T ss_dssp             TTCEEEECCTTCHHHHHHHHHHTTCCEEEECCCGGGGGGHHHHHHHHHHHCCCSE
T ss_pred             CCcEEEEeecCCHHHHHHHHhhCCCCEEEECCchhhHHHHHHHHHHHHHcCCceE
Confidence            578999999999999999999  999999999874333 468999999999 543

>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp}

Probab=96.69  E-value=0.0024  Score=47.03  Aligned_cols=53  Identities=9%  Similarity=0.014  Sum_probs=42.6

Q ss_pred             CCcceEEeeCCC-HHHHHHHHhcCcEEEecCCCccc--------hhHHHHHHHHHcCC-Ceee
Q psy12849         30 RTNRTTVVNTIN-ESSILIMAKKCRVILNCVGPYTW--------YGEAVVKACIEAKT-HHVD   82 (138)
Q Consensus        30 ~~~~~~~~D~~d-~~~L~~~~~~~dvVIn~~GPf~~--------~~~~v~~Aci~~g~-hYvD   82 (138)
                      .+++++++|+.| ++++.++++++|+||||+|+...        ....++++|.+.|+ ++|=
T Consensus        41 ~~~~~~~~D~~d~~~~~~~~~~~~d~vi~~ag~~~~~~~~~n~~~~~~l~~a~~~~~~~~iv~  103 (219)
T 3dqp_A           41 NNVKAVHFDVDWTPEEMAKQLHGMDAIINVSGSGGKSLLKVDLYGAVKLMQAAEKAEVKRFIL  103 (219)
T ss_dssp             TTEEEEECCTTSCHHHHHTTTTTCSEEEECCCCTTSSCCCCCCHHHHHHHHHHHHTTCCEEEE
T ss_pred             CCceEEEecccCCHHHHHHHHcCCCEEEECCcCCCCCcEeEeHHHHHHHHHHHHHhCCCEEEE
Confidence            578899999999 99999999999999999997641        13467888887775 4543

>3bio_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, MCSG, PSI-2, GFO/IDH/MO family, protein structure initiative; HET: MSE EPE; 1.80A {Porphyromonas gingivalis}

Probab=96.68  E-value=0.0075  Score=47.80  Aligned_cols=72  Identities=14%  Similarity=0.028  Sum_probs=53.0

Q ss_pred             hcCcEEEecCCCccchhHHHHHHHHHcCCCeeeCCCC-hHHHHHHHHHhHHHHHhCCCEEEeCCCCccchHhHHHH
Q psy12849         50 KKCRVILNCVGPYTWYGEAVVKACIEAKTHHVDITGE-PYFMEYMQYEYNTRAQESEVCVVSACGIETLPIDMGVL  124 (138)
Q Consensus        50 ~~~dvVIn~~GPf~~~~~~v~~Aci~~g~hYvDisge-~~~~~~~~~~~~~~A~~~gv~iv~~~G~d~~p~dl~~~  124 (138)
                      .++|+|+-|++|+ .+ .++++.|+++|.|.+|-.-- ....... .++.+.++++|+.++.++||+|+-..+...
T Consensus        64 ~~~DvViiatp~~-~h-~~~~~~al~aG~~Vi~ekP~~a~~~~~~-~~l~~~a~~~g~~~~v~~~~~p~~~~~~~~  136 (304)
T 3bio_A           64 ESVDVALVCSPSR-EV-ERTALEILKKGICTADSFDIHDGILALR-RSLGDAAGKSGAAAVIASGWDPGSDSVVRT  136 (304)
T ss_dssp             SSCCEEEECSCHH-HH-HHHHHHHHTTTCEEEECCCCGGGHHHHH-HHHHHHHHHHTCEEECSCBBTTBHHHHHHH
T ss_pred             CCCCEEEECCCch-hh-HHHHHHHHHcCCeEEECCCCCCCCHHHH-HHHHHHHHhCCCEEEEeCCCCHHHHHHHHH
Confidence            6899999999554 44 47889999999999997542 3344443 367788999999988999997765444333

>1oc2_A DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnose; HET: TDX NAD; 1.5A {Streptococcus suis} SCOP: c.2.1.2 PDB: 1ker_A* 1ket_A* 1kep_A*

Probab=96.67  E-value=0.0041  Score=48.61  Aligned_cols=54  Identities=9%  Similarity=0.027  Sum_probs=43.8

Q ss_pred             CCcceEEeeCCCHHHHHHHHhcCcEEEecCCCccch----------------hHHHHHHHHHcCCCeeeC
Q psy12849         30 RTNRTTVVNTINESSILIMAKKCRVILNCVGPYTWY----------------GEAVVKACIEAKTHHVDI   83 (138)
Q Consensus        30 ~~~~~~~~D~~d~~~L~~~~~~~dvVIn~~GPf~~~----------------~~~v~~Aci~~g~hYvDi   83 (138)
                      .++.++.+|+.|++++.++++++|+||||+|+....                ...++++|.+.|++.|=+
T Consensus        54 ~~~~~~~~Dl~d~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~~~v~~  123 (348)
T 1oc2_A           54 DRVELVVGDIADAELVDKLAAKADAIVHYAAESHNDNSLNDPSPFIHTNFIGTYTLLEAARKYDIRFHHV  123 (348)
T ss_dssp             SSEEEEECCTTCHHHHHHHHTTCSEEEECCSCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHHTCEEEEE
T ss_pred             CCeEEEECCCCCHHHHHHHhhcCCEEEECCcccCccchhhCHHHHHHHHHHHHHHHHHHHHHhCCeEEEe
Confidence            467889999999999999999999999999976311                246889999988766543

>2wm3_A NMRA-like family domain containing protein 1; unknown function; HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A* 3dxf_A 3e5m_A

Probab=96.63  E-value=0.0029  Score=48.69  Aligned_cols=54  Identities=4%  Similarity=-0.081  Sum_probs=43.0

Q ss_pred             CCcceEEeeCCCHHHHHHHHhcCcEEEecCCCccc--------hhHHHHHHHHHcCC-CeeeC
Q psy12849         30 RTNRTTVVNTINESSILIMAKKCRVILNCVGPYTW--------YGEAVVKACIEAKT-HHVDI   83 (138)
Q Consensus        30 ~~~~~~~~D~~d~~~L~~~~~~~dvVIn~~GPf~~--------~~~~v~~Aci~~g~-hYvDi   83 (138)
                      ..++++.+|+.|++++.++++++|+|||++|++..        ....++++|.+.|+ ++|=+
T Consensus        51 ~~~~~~~~D~~d~~~l~~~~~~~d~vi~~a~~~~~~~~~~~~~~~~~~~~aa~~~gv~~iv~~  113 (299)
T 2wm3_A           51 QGAEVVQGDQDDQVIMELALNGAYATFIVTNYWESCSQEQEVKQGKLLADLARRLGLHYVVYS  113 (299)
T ss_dssp             TTCEEEECCTTCHHHHHHHHTTCSEEEECCCHHHHTCHHHHHHHHHHHHHHHHHHTCSEEEEC
T ss_pred             CCCEEEEecCCCHHHHHHHHhcCCEEEEeCCCCccccchHHHHHHHHHHHHHHHcCCCEEEEE
Confidence            35789999999999999999999999999986421        23578899998886 34433

>2zcu_A Uncharacterized oxidoreductase YTFG; alpha-beta sandwich; 1.80A {Escherichia coli} PDB: 2zcv_A*

Probab=96.52  E-value=0.0047  Score=46.84  Aligned_cols=48  Identities=10%  Similarity=-0.024  Sum_probs=38.9

Q ss_pred             CcceEEeeCCCHHHHHHHHhcCcEEEecCCCcc----chhHHHHHHHHHcCC
Q psy12849         31 TNRTTVVNTINESSILIMAKKCRVILNCVGPYT----WYGEAVVKACIEAKT   78 (138)
Q Consensus        31 ~~~~~~~D~~d~~~L~~~~~~~dvVIn~~GPf~----~~~~~v~~Aci~~g~   78 (138)
                      +++++.+|+.|++++.++++++|+|||++|+..    .....++++|.+.|+
T Consensus        45 ~~~~~~~D~~d~~~~~~~~~~~d~vi~~a~~~~~~~~~~~~~l~~a~~~~~~   96 (286)
T 2zcu_A           45 GITVRQADYGDEAALTSALQGVEKLLLISSSEVGQRAPQHRNVINAAKAAGV   96 (286)
T ss_dssp             TCEEEECCTTCHHHHHHHTTTCSEEEECC--------CHHHHHHHHHHHHTC
T ss_pred             CCeEEEcCCCCHHHHHHHHhCCCEEEEeCCCCchHHHHHHHHHHHHHHHcCC
Confidence            578899999999999999999999999998631    234688999999886

>2dc1_A L-aspartate dehydrogenase; NAD, oxidoreductase; HET: CIT NAD; 1.90A {Archaeoglobus fulgidus}

Probab=96.50  E-value=0.005  Score=46.74  Aligned_cols=73  Identities=8%  Similarity=-0.010  Sum_probs=52.0

Q ss_pred             HHHHHH-hcCcEEEecCCCccchhHHHHHHHHHcCCCeeeCCCChHHHHHHHHHhHHHHHhCCCEEEeCCCCccch
Q psy12849         44 SILIMA-KKCRVILNCVGPYTWYGEAVVKACIEAKTHHVDITGEPYFMEYMQYEYNTRAQESEVCVVSACGIETLP  118 (138)
Q Consensus        44 ~L~~~~-~~~dvVIn~~GPf~~~~~~v~~Aci~~g~hYvDisge~~~~~~~~~~~~~~A~~~gv~iv~~~G~d~~p  118 (138)
                      ++.+++ .++|+|+.|++|. .+ ..++..|+++|+|.|+.+--..-..+...++.+.++++|+.++...|+..++
T Consensus        42 ~~~~l~~~~~DvVv~~~~~~-~~-~~~~~~~l~~G~~vv~~~~~~~~~~~~~~~l~~~a~~~g~~~~i~~~~~g~~  115 (236)
T 2dc1_A           42 GIDEFLQREMDVAVEAASQQ-AV-KDYAEKILKAGIDLIVLSTGAFADRDFLSRVREVCRKTGRRVYIASGAIGGL  115 (236)
T ss_dssp             SHHHHTTSCCSEEEECSCHH-HH-HHHHHHHHHTTCEEEESCGGGGGSHHHHHHHHHHHHHHCCCEEECCTTCSCH
T ss_pred             CHHHHhcCCCCEEEECCCHH-HH-HHHHHHHHHCCCcEEEECcccCChHHHHHHHHHHHHhcCCeEEecCccccCh
Confidence            356666 6999999999665 33 4778999999999999864322222222355677888899888888875554

>4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A*

Probab=96.28  E-value=0.0085  Score=46.83  Aligned_cols=52  Identities=12%  Similarity=0.092  Sum_probs=43.3

Q ss_pred             CCcceEEeeCCCHHHHHHHHhcCcEEEecCCCccchh--------------HHHHHHHHHcCC-Cee
Q psy12849         30 RTNRTTVVNTINESSILIMAKKCRVILNCVGPYTWYG--------------EAVVKACIEAKT-HHV   81 (138)
Q Consensus        30 ~~~~~~~~D~~d~~~L~~~~~~~dvVIn~~GPf~~~~--------------~~v~~Aci~~g~-hYv   81 (138)
                      .+++++.+|+.|++++.++++++|+||||+|+.....              ..++++|.+.|+ ++|
T Consensus        56 ~~~~~~~~Dl~d~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~~~~V  122 (347)
T 4id9_A           56 TGGEEVVGSLEDGQALSDAIMGVSAVLHLGAFMSWAPADRDRMFAVNVEGTRRLLDAASAAGVRRFV  122 (347)
T ss_dssp             SCCSEEESCTTCHHHHHHHHTTCSEEEECCCCCCSSGGGHHHHHHHHTHHHHHHHHHHHHTTCSEEE
T ss_pred             CCccEEecCcCCHHHHHHHHhCCCEEEECCcccCcchhhHHHHHHHHHHHHHHHHHHHHHcCCCeEE
Confidence            4678999999999999999999999999998764321              468999999987 454

>4egb_A DTDP-glucose 4,6-dehydratase; rhamnose pathway, center for structural genomics of infectio diseases, csgid, niaid; HET: NAD SUC; 3.00A {Bacillus anthracis}

Probab=96.26  E-value=0.0086  Score=46.79  Aligned_cols=50  Identities=10%  Similarity=-0.045  Sum_probs=41.5

Q ss_pred             CCcceEEeeCCCHHHHHHHHhc--CcEEEecCCCccch----------------hHHHHHHHHHcCCC
Q psy12849         30 RTNRTTVVNTINESSILIMAKK--CRVILNCVGPYTWY----------------GEAVVKACIEAKTH   79 (138)
Q Consensus        30 ~~~~~~~~D~~d~~~L~~~~~~--~dvVIn~~GPf~~~----------------~~~v~~Aci~~g~h   79 (138)
                      .+++++.+|+.|++++.+++++  +|+||||+|+....                ...++++|.+.|+.
T Consensus        75 ~~~~~~~~Dl~d~~~~~~~~~~~~~d~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~~  142 (346)
T 4egb_A           75 PNYYFVKGEIQNGELLEHVIKERDVQVIVNFAAESHVDRSIENPIPFYDTNVIGTVTLLELVKKYPHI  142 (346)
T ss_dssp             TTEEEEECCTTCHHHHHHHHHHHTCCEEEECCCCC---------CHHHHHHTHHHHHHHHHHHHSTTS
T ss_pred             CCeEEEEcCCCCHHHHHHHHhhcCCCEEEECCcccchhhhhhCHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            4688999999999999999998  99999999975422                25789999999865

>1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A*

Probab=96.20  E-value=0.012  Score=43.52  Aligned_cols=33  Identities=6%  Similarity=-0.036  Sum_probs=30.2

Q ss_pred             CCcceEEeeCCCHHHHHHHHhcCcEEEecCCCc
Q psy12849         30 RTNRTTVVNTINESSILIMAKKCRVILNCVGPY   62 (138)
Q Consensus        30 ~~~~~~~~D~~d~~~L~~~~~~~dvVIn~~GPf   62 (138)
                      .++.++.+|+.|++++.++++++|+|||++|+.
T Consensus        48 ~~~~~~~~D~~d~~~~~~~~~~~d~vi~~a~~~   80 (253)
T 1xq6_A           48 GEADVFIGDITDADSINPAFQGIDALVILTSAV   80 (253)
T ss_dssp             CCTTEEECCTTSHHHHHHHHTTCSEEEECCCCC
T ss_pred             CCeeEEEecCCCHHHHHHHHcCCCEEEEecccc
Confidence            467899999999999999999999999999864

>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*

Probab=96.19  E-value=0.0084  Score=46.94  Aligned_cols=52  Identities=8%  Similarity=-0.117  Sum_probs=42.5

Q ss_pred             CCcceEEeeCCCHHHHHHHHhcCcEEEecCCCccch----------------hHHHHHHHHHcCC-Cee
Q psy12849         30 RTNRTTVVNTINESSILIMAKKCRVILNCVGPYTWY----------------GEAVVKACIEAKT-HHV   81 (138)
Q Consensus        30 ~~~~~~~~D~~d~~~L~~~~~~~dvVIn~~GPf~~~----------------~~~v~~Aci~~g~-hYv   81 (138)
                      .+++++.+|+.|++++.++++++|+||||+|+....                ...++++|.+.|+ ++|
T Consensus        79 ~~~~~~~~Dl~d~~~~~~~~~~~d~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~~~~v  147 (351)
T 3ruf_A           79 SRFCFIEGDIRDLTTCEQVMKGVDHVLHQAALGSVPRSIVDPITTNATNITGFLNILHAAKNAQVQSFT  147 (351)
T ss_dssp             TTEEEEECCTTCHHHHHHHTTTCSEEEECCCCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTTCSEEE
T ss_pred             CceEEEEccCCCHHHHHHHhcCCCEEEECCccCCcchhhhCHHHHHHHHHHHHHHHHHHHHHcCCCEEE
Confidence            578899999999999999999999999999964211                1358999999986 444

>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}

Probab=96.18  E-value=0.0057  Score=44.79  Aligned_cols=53  Identities=13%  Similarity=0.021  Sum_probs=41.4

Q ss_pred             CCcceEEeeCCCHHHHHHHHhcCcEEEecCCCcc---------chhHHHHHHHHHcCCCeeeCC
Q psy12849         30 RTNRTTVVNTINESSILIMAKKCRVILNCVGPYT---------WYGEAVVKACIEAKTHHVDIT   84 (138)
Q Consensus        30 ~~~~~~~~D~~d~~~L~~~~~~~dvVIn~~GPf~---------~~~~~v~~Aci~~g~hYvDis   84 (138)
                      .+++++++|+.|+++  +.++++|+||||+|+..         .....++++|.+.|.++|=+|
T Consensus        43 ~~~~~~~~D~~d~~~--~~~~~~d~vi~~ag~~~~~~~~~~n~~~~~~l~~a~~~~~~~~v~~S  104 (224)
T 3h2s_A           43 ATVATLVKEPLVLTE--ADLDSVDAVVDALSVPWGSGRGYLHLDFATHLVSLLRNSDTLAVFIL  104 (224)
T ss_dssp             TTSEEEECCGGGCCH--HHHTTCSEEEECCCCCTTSSCTHHHHHHHHHHHHTCTTCCCEEEEEC
T ss_pred             CCceEEecccccccH--hhcccCCEEEECCccCCCcchhhHHHHHHHHHHHHHHHcCCcEEEEe
Confidence            578999999999887  88899999999999841         123567888888776666553

>2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa}

Probab=96.16  E-value=0.0086  Score=46.54  Aligned_cols=51  Identities=12%  Similarity=0.219  Sum_probs=38.3

Q ss_pred             CcceEEeeCCCHHHHHHHHhcCcEEEecCCCccch--------------hHHHHHHHHHcCC-Cee
Q psy12849         31 TNRTTVVNTINESSILIMAKKCRVILNCVGPYTWY--------------GEAVVKACIEAKT-HHV   81 (138)
Q Consensus        31 ~~~~~~~D~~d~~~L~~~~~~~dvVIn~~GPf~~~--------------~~~v~~Aci~~g~-hYv   81 (138)
                      +++++.+|+.|++++.++++++|+||||+|+....              ...++++|.+.|+ ++|
T Consensus        57 ~~~~~~~Dl~d~~~~~~~~~~~d~vih~a~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~v  122 (342)
T 2x4g_A           57 EPECRVAEMLDHAGLERALRGLDGVIFSAGYYPSRPRRWQEEVASALGQTNPFYAACLQARVPRIL  122 (342)
T ss_dssp             CCEEEECCTTCHHHHHHHTTTCSEEEEC------------CHHHHHHHHHHHHHHHHHHHTCSCEE
T ss_pred             CeEEEEecCCCHHHHHHHHcCCCEEEECCccCcCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCeEE
Confidence            67889999999999999999999999999965421              2478999999885 554

>3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei}

Probab=96.15  E-value=0.0086  Score=47.36  Aligned_cols=55  Identities=22%  Similarity=0.141  Sum_probs=44.9

Q ss_pred             CCcceEEeeCC-CHHHHHHHHhcCcEEEecCCCccch----------------hHHHHHHHHHcCCCeeeCC
Q psy12849         30 RTNRTTVVNTI-NESSILIMAKKCRVILNCVGPYTWY----------------GEAVVKACIEAKTHHVDIT   84 (138)
Q Consensus        30 ~~~~~~~~D~~-d~~~L~~~~~~~dvVIn~~GPf~~~----------------~~~v~~Aci~~g~hYvDis   84 (138)
                      .+++++..|+. |++.+.++++++|+||||+|.....                ...++++|.+.|.++|=+|
T Consensus        69 ~~v~~~~~Dl~~d~~~~~~~~~~~d~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~~~v~~S  140 (372)
T 3slg_A           69 ERMHFFEGDITINKEWVEYHVKKCDVILPLVAIATPATYVKQPLRVFELDFEANLPIVRSAVKYGKHLVFPS  140 (372)
T ss_dssp             TTEEEEECCTTTCHHHHHHHHHHCSEEEECBCCCCHHHHHHCHHHHHHHHTTTTHHHHHHHHHHTCEEEEEC
T ss_pred             CCeEEEeCccCCCHHHHHHHhccCCEEEEcCccccHHHHhhCHHHHHHHHHHHHHHHHHHHHHhCCcEEEeC
Confidence            57899999999 9999999999999999999865421                1468999999887776443

>2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase, GDP-gulose, GDP-galactose, keto intermediate, vitamin C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A*

Probab=96.12  E-value=0.011  Score=47.24  Aligned_cols=51  Identities=8%  Similarity=0.011  Sum_probs=41.7

Q ss_pred             CcceEEeeCCCHHHHHHHHhcCcEEEecCCCccch-----------------hHHHHHHHHHcCC-Cee
Q psy12849         31 TNRTTVVNTINESSILIMAKKCRVILNCVGPYTWY-----------------GEAVVKACIEAKT-HHV   81 (138)
Q Consensus        31 ~~~~~~~D~~d~~~L~~~~~~~dvVIn~~GPf~~~-----------------~~~v~~Aci~~g~-hYv   81 (138)
                      +++++.+|+.|++++.++++++|+||||+|+....                 ...++++|.+.|+ ++|
T Consensus        73 ~v~~~~~Dl~d~~~~~~~~~~~d~Vih~A~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~a~~~~~~~~~V  141 (379)
T 2c5a_A           73 CDEFHLVDLRVMENCLKVTEGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMIEAARINGIKRFF  141 (379)
T ss_dssp             CSEEEECCTTSHHHHHHHHTTCSEEEECCCCCCCHHHHTTCHHHHHHHHHHHHHHHHHHHHHTTCSEEE
T ss_pred             CceEEECCCCCHHHHHHHhCCCCEEEECceecCcccccccCHHHHHHHHHHHHHHHHHHHHHcCCCEEE
Confidence            57889999999999999999999999999975321                 1368899999887 443

>1r6d_A TDP-glucose-4,6-dehydratase; rossmann fold, short-chain dehydrogenase/reductase, lyase; HET: NAD DAU; 1.35A {Streptomyces venezuelae} SCOP: c.2.1.2 PDB: 1r66_A*

Probab=96.10  E-value=0.01  Score=46.17  Aligned_cols=52  Identities=8%  Similarity=0.029  Sum_probs=42.5

Q ss_pred             CCcceEEeeCCCHHHHHHHHhcCcEEEecCCCccc----------------hhHHHHHHHHHcCC-Cee
Q psy12849         30 RTNRTTVVNTINESSILIMAKKCRVILNCVGPYTW----------------YGEAVVKACIEAKT-HHV   81 (138)
Q Consensus        30 ~~~~~~~~D~~d~~~L~~~~~~~dvVIn~~GPf~~----------------~~~~v~~Aci~~g~-hYv   81 (138)
                      .++.++.+|+.|++++.+++.++|+||||+|+...                ....++++|.+.|+ ++|
T Consensus        55 ~~~~~~~~Dl~d~~~~~~~~~~~d~Vih~A~~~~~~~~~~~~~~~~~~Nv~~~~~l~~a~~~~~~~~~v  123 (337)
T 1r6d_A           55 PRLRFVHGDIRDAGLLARELRGVDAIVHFAAESHVDRSIAGASVFTETNVQGTQTLLQCAVDAGVGRVV  123 (337)
T ss_dssp             TTEEEEECCTTCHHHHHHHTTTCCEEEECCSCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHTTCCEEE
T ss_pred             CCeEEEEcCCCCHHHHHHHhcCCCEEEECCCccCchhhhhCHHHHHHHHHHHHHHHHHHHHHcCCCEEE
Confidence            46788999999999999999999999999997531                12478899999887 444

>1f06_A MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH-inhibitor ternary complex, oxidoreductase; HET: NDP 2NP; 2.10A {Corynebacterium glutamicum} SCOP: c.2.1.3 d.81.1.3 PDB: 1dap_A* 2dap_A* 3dap_A*

Probab=96.07  E-value=0.0083  Score=47.88  Aligned_cols=72  Identities=14%  Similarity=0.043  Sum_probs=51.2

Q ss_pred             HHHHHhcCcEEEecCCCccchhHHHHHHHHHcCCCeeeCCCChHHHHHHHHHhHHHHHhCCCEEEeCCCCccch
Q psy12849         45 ILIMAKKCRVILNCVGPYTWYGEAVVKACIEAKTHHVDITGEPYFMEYMQYEYNTRAQESEVCVVSACGIETLP  118 (138)
Q Consensus        45 L~~~~~~~dvVIn~~GPf~~~~~~v~~Aci~~g~hYvDisge~~~~~~~~~~~~~~A~~~gv~iv~~~G~d~~p  118 (138)
                      +.+++.+.|+|+.|..|+..  ...+..|+++|.|.|+...-..-..++..++.+.|++.+...+...||+++.
T Consensus        52 ~~~ll~~~DvViiatp~~~h--~~~~~~al~aG~~Vv~ekp~~~~~~~~~~~l~~~a~~~~~v~v~~~~~~p~~  123 (320)
T 1f06_A           52 VDKHADDVDVLFLCMGSATD--IPEQAPKFAQFACTVDTYDNHRDIPRHRQVMNEAATAAGNVALVSTGWDPGM  123 (320)
T ss_dssp             GGGTTTTCSEEEECSCTTTH--HHHHHHHHTTTSEEECCCCCGGGHHHHHHHHHHHHHHHTCEEECSCSBTTBH
T ss_pred             HHHHhcCCCEEEEcCCcHHH--HHHHHHHHHCCCEEEECCCCcCCHHHHHHHHHHHHHhCCCEEEEecCChHHH
Confidence            44555789999999987653  4678899999999999764322233433466677887786666677986654

>4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis}

Probab=96.02  E-value=0.0025  Score=50.51  Aligned_cols=80  Identities=13%  Similarity=0.105  Sum_probs=52.1

Q ss_pred             HHHHHHhcCcEEEecCCCccchhHHHHHHHHHcCCCeee-CCCChHHHHHHHHHhHHHHHhCCCEEEeCCCCccchHhHH
Q psy12849         44 SILIMAKKCRVILNCVGPYTWYGEAVVKACIEAKTHHVD-ITGEPYFMEYMQYEYNTRAQESEVCVVSACGIETLPIDMG  122 (138)
Q Consensus        44 ~L~~~~~~~dvVIn~~GPf~~~~~~v~~Aci~~g~hYvD-isge~~~~~~~~~~~~~~A~~~gv~iv~~~G~d~~p~dl~  122 (138)
                      ++.++++++|+||.++.|-.  ....++.|+++|+|.|= .+|   |..+-..++.+.|++  ..++.+..|+.+.-.++
T Consensus        66 dl~~ll~~~DVVIDfT~p~a--~~~~~~~al~~G~~vVigTTG---~s~~~~~~L~~aa~~--~~vv~a~N~s~Gv~l~~  138 (272)
T 4f3y_A           66 DIERVCAEADYLIDFTLPEG--TLVHLDAALRHDVKLVIGTTG---FSEPQKAQLRAAGEK--IALVFSANMSVGVNVTM  138 (272)
T ss_dssp             CHHHHHHHCSEEEECSCHHH--HHHHHHHHHHHTCEEEECCCC---CCHHHHHHHHHHTTT--SEEEECSCCCHHHHHHH
T ss_pred             CHHHHhcCCCEEEEcCCHHH--HHHHHHHHHHcCCCEEEECCC---CCHHHHHHHHHHhcc--CCEEEECCCCHHHHHHH
Confidence            46667789999999996643  35789999999999986 334   333323455565554  66788888855543332


Q ss_pred             H--HHHHHHh
Q psy12849        123 V--LMLQDSF  130 (138)
Q Consensus       123 ~--~~~~~~~  130 (138)
                      -  ..+++.|
T Consensus       139 ~~~~~aa~~l  148 (272)
T 4f3y_A          139 KLLEFAAKQF  148 (272)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHHhc
Confidence            2  2444444

>3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A*

Probab=95.98  E-value=0.0055  Score=49.45  Aligned_cols=88  Identities=10%  Similarity=0.053  Sum_probs=60.2

Q ss_pred             cceEEeeCCCHHHHHHHHhcCcEEEecCCCccchh----HHH-HHHHHHcCCCeeeCCCChHHHHHHHHHhHHHHHhCCC
Q psy12849         32 NRTTVVNTINESSILIMAKKCRVILNCVGPYTWYG----EAV-VKACIEAKTHHVDITGEPYFMEYMQYEYNTRAQESEV  106 (138)
Q Consensus        32 ~~~~~~D~~d~~~L~~~~~~~dvVIn~~GPf~~~~----~~v-~~Aci~~g~hYvDisge~~~~~~~~~~~~~~A~~~gv  106 (138)
                      ..+..++.++.+++.+.++++|+||||. |-.-.+    .++ -...+..+...+|+.+.|.-+     .|-.+|+++|.
T Consensus       207 ~~~~~~~~~~~~~l~~~l~~aDiIINaT-p~Gm~~~~~~~p~~~~~~l~~~~~V~DlvY~P~~T-----~ll~~A~~~G~  280 (315)
T 3tnl_A          207 CKAQLFDIEDHEQLRKEIAESVIFTNAT-GVGMKPFEGETLLPSADMLRPELIVSDVVYKPTKT-----RLLEIAEEQGC  280 (315)
T ss_dssp             CEEEEEETTCHHHHHHHHHTCSEEEECS-STTSTTSTTCCSCCCGGGCCTTCEEEESCCSSSSC-----HHHHHHHHTTC
T ss_pred             CceEEeccchHHHHHhhhcCCCEEEECc-cCCCCCCCCCCCCCcHHHcCCCCEEEEeccCCCCC-----HHHHHHHHCCC
Confidence            3456678888888999999999999999 533221    123 234456677788999876543     33356889999


Q ss_pred             EEEeCCCCccchHhHHHHHHHHHhhh
Q psy12849        107 CVVSACGIETLPIDMGVLMLQDSFEG  132 (138)
Q Consensus       107 ~iv~~~G~d~~p~dl~~~~~~~~~~~  132 (138)
                      .+++|.+       |+.+.++.+|+-
T Consensus       281 ~~~~Gl~-------MLv~Qa~~af~l  299 (315)
T 3tnl_A          281 QTLNGLG-------MMLWQGAKAFEI  299 (315)
T ss_dssp             EEECSHH-------HHHHHHHHHHHH
T ss_pred             eEeCcHH-------HHHHHHHHHHHH
Confidence            9887665       556666655553

>2yy7_A L-threonine dehydrogenase; thermolabIle, flavobacterium FRIG KUC-1, oxidoreductase; HET: PE8 NAD MES; 2.06A {Flavobacterium frigidimaris}

Probab=95.96  E-value=0.012  Score=44.99  Aligned_cols=51  Identities=16%  Similarity=0.025  Sum_probs=41.4

Q ss_pred             CcceEEeeCCCHHHHHHHHh--cCcEEEecCCCccch---------------hHHHHHHHHHcCC-Cee
Q psy12849         31 TNRTTVVNTINESSILIMAK--KCRVILNCVGPYTWY---------------GEAVVKACIEAKT-HHV   81 (138)
Q Consensus        31 ~~~~~~~D~~d~~~L~~~~~--~~dvVIn~~GPf~~~---------------~~~v~~Aci~~g~-hYv   81 (138)
                      +++++.+|+.|++++.++++  ++|+||||+|+....               ...++++|.+.|+ ++|
T Consensus        46 ~~~~~~~D~~d~~~~~~~~~~~~~d~vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v  114 (312)
T 2yy7_A           46 SGPFEVVNALDFNQIEHLVEVHKITDIYLMAALLSATAEKNPAFAWDLNMNSLFHVLNLAKAKKIKKIF  114 (312)
T ss_dssp             SSCEEECCTTCHHHHHHHHHHTTCCEEEECCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHTTSCSEEE
T ss_pred             CCceEEecCCCHHHHHHHHhhcCCCEEEECCccCCCchhhChHHHHHHHHHHHHHHHHHHHHcCCCEEE
Confidence            46789999999999999999  899999999975421               1368899999887 444

>2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, sugar binding protein; HET: NAD; 2.19A {Bordetella bronchiseptica}

Probab=95.94  E-value=0.014  Score=45.70  Aligned_cols=52  Identities=12%  Similarity=0.085  Sum_probs=42.3

Q ss_pred             CCcceEEeeCCCHHHHHHHHhc--CcEEEecCCCccc-------------hhHHHHHHHHHcCC-Cee
Q psy12849         30 RTNRTTVVNTINESSILIMAKK--CRVILNCVGPYTW-------------YGEAVVKACIEAKT-HHV   81 (138)
Q Consensus        30 ~~~~~~~~D~~d~~~L~~~~~~--~dvVIn~~GPf~~-------------~~~~v~~Aci~~g~-hYv   81 (138)
                      .++.++.+|+.|++++.+++++  +|+||||+|+...             ....++++|.+.|+ ++|
T Consensus        66 ~~~~~~~~Dl~d~~~~~~~~~~~~~D~vih~A~~~~~~~~~~~~~~~N~~~~~~l~~a~~~~~~~~iV  133 (333)
T 2q1w_A           66 PNLTFVEGSIADHALVNQLIGDLQPDAVVHTAASYKDPDDWYNDTLTNCVGGSNVVQAAKKNNVGRFV  133 (333)
T ss_dssp             TTEEEEECCTTCHHHHHHHHHHHCCSEEEECCCCCSCTTCHHHHHHHHTHHHHHHHHHHHHTTCSEEE
T ss_pred             CCceEEEEeCCCHHHHHHHHhccCCcEEEECceecCCCccCChHHHHHHHHHHHHHHHHHHhCCCEEE
Confidence            3577899999999999999999  9999999997643             02468899999886 444

>2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus}

Probab=95.90  E-value=0.004  Score=49.43  Aligned_cols=80  Identities=15%  Similarity=0.081  Sum_probs=53.5

Q ss_pred             HHHHHHHhcCcEEEecCCCccchh---HHHHHHHHHcCCCeeeCCCChHHHHHHHHHhHHHHHhCCCEEEeCCCCccchH
Q psy12849         43 SSILIMAKKCRVILNCVGPYTWYG---EAVVKACIEAKTHHVDITGEPYFMEYMQYEYNTRAQESEVCVVSACGIETLPI  119 (138)
Q Consensus        43 ~~L~~~~~~~dvVIn~~GPf~~~~---~~v~~Aci~~g~hYvDisge~~~~~~~~~~~~~~A~~~gv~iv~~~G~d~~p~  119 (138)
                      +++.+.++++|+||||++.-....   .++-..+++.|...+|++..|..+     .+.++|+++|...++|.+      
T Consensus       196 ~~~~~~~~~aDivIn~t~~~~~~~~~~~~i~~~~l~~~~~v~D~~y~P~~T-----~ll~~A~~~G~~~v~Gl~------  264 (297)
T 2egg_A          196 AEAETRLAEYDIIINTTSVGMHPRVEVQPLSLERLRPGVIVSDIIYNPLET-----KWLKEAKARGARVQNGVG------  264 (297)
T ss_dssp             HHHHHTGGGCSEEEECSCTTCSSCCSCCSSCCTTCCTTCEEEECCCSSSSC-----HHHHHHHHTTCEEECSHH------
T ss_pred             HHHHhhhccCCEEEECCCCCCCCCCCCCCCCHHHcCCCCEEEEcCCCCCCC-----HHHHHHHHCcCEEECCHH------
Confidence            467778889999999995433210   122345677899999998864433     244678999999988744      


Q ss_pred             hHHHHHHHHHhhhhc
Q psy12849        120 DMGVLMLQDSFEGHS  134 (138)
Q Consensus       120 dl~~~~~~~~~~~~~  134 (138)
                       |+...++.+|+--+
T Consensus       265 -MLv~Qa~~af~~w~  278 (297)
T 2egg_A          265 -MLVYQGALAFEKWT  278 (297)
T ss_dssp             -HHHHHHHHHHHHHH
T ss_pred             -HHHHHHHHHHHHHh
Confidence             55555555555433

>3ijp_A DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, decode biostructures, niaid, amino-acid biosynthesis, cytoplasm; HET: NAP; 2.30A {Bartonella henselae}

Probab=95.89  E-value=0.0038  Score=49.99  Aligned_cols=68  Identities=13%  Similarity=0.033  Sum_probs=47.7

Q ss_pred             HHHHHHhcCcEEEecCCCccchhHHHHHHHHHcCCCeee-CCCChHHHHHHHHHhHHHHHhCCCEEEeCCCCccch
Q psy12849         44 SILIMAKKCRVILNCVGPYTWYGEAVVKACIEAKTHHVD-ITGEPYFMEYMQYEYNTRAQESEVCVVSACGIETLP  118 (138)
Q Consensus        44 ~L~~~~~~~dvVIn~~GPf~~~~~~v~~Aci~~g~hYvD-isge~~~~~~~~~~~~~~A~~~gv~iv~~~G~d~~p  118 (138)
                      ++.+++.++|+||.+..|-..  ...++.|+++|++.|= .+|   |...-..++.+.|++  +.++.+..|+.+.
T Consensus        81 dl~~ll~~aDVvIDFT~p~a~--~~~~~~~l~~Gv~vViGTTG---~~~e~~~~L~~aa~~--~~~~~a~N~SiGv  149 (288)
T 3ijp_A           81 DPESAFSNTEGILDFSQPQAS--VLYANYAAQKSLIHIIGTTG---FSKTEEAQIADFAKY--TTIVKSGNMSLGV  149 (288)
T ss_dssp             CHHHHTTSCSEEEECSCHHHH--HHHHHHHHHHTCEEEECCCC---CCHHHHHHHHHHHTT--SEEEECSCCCHHH
T ss_pred             CHHHHhcCCCEEEEcCCHHHH--HHHHHHHHHcCCCEEEECCC---CCHHHHHHHHHHhCc--CCEEEECCCcHHH
Confidence            467788899999999977543  4689999999999986 344   333223456666654  6677777774444

>1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK, UDP, N-acetylglucosamine, N- acetylgalactosamine, UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A*

Probab=95.88  E-value=0.018  Score=45.21  Aligned_cols=49  Identities=10%  Similarity=-0.130  Sum_probs=40.9

Q ss_pred             CCcceEEeeCCCHHHHHHHHhcCcEEEecCCCccc----------------hhHHHHHHHHHcCC
Q psy12849         30 RTNRTTVVNTINESSILIMAKKCRVILNCVGPYTW----------------YGEAVVKACIEAKT   78 (138)
Q Consensus        30 ~~~~~~~~D~~d~~~L~~~~~~~dvVIn~~GPf~~----------------~~~~v~~Aci~~g~   78 (138)
                      .++.++.+|+.|++++.++++++|+||||+|+...                ....++++|.+.|+
T Consensus        81 ~~~~~~~~Dl~d~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~  145 (352)
T 1sb8_A           81 SNFKFIQGDIRNLDDCNNACAGVDYVLHQAALGSVPRSINDPITSNATNIDGFLNMLIAARDAKV  145 (352)
T ss_dssp             TTEEEEECCTTSHHHHHHHHTTCSEEEECCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTTC
T ss_pred             CceEEEECCCCCHHHHHHHhcCCCEEEECCcccCchhhhhCHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            46788999999999999999999999999997531                01468899999886

>1xgk_A Nitrogen metabolite repression regulator NMRA; rossmann fold, transcriptional regulation, short chain dehyd reductase, NADP binding; 1.40A {Emericella nidulans} SCOP: c.2.1.2 PDB: 1k6x_A* 1k6j_A 1k6i_A* 1ti7_A* 2vus_A 2vut_A* 2vuu_A*

Probab=95.86  E-value=0.015  Score=46.59  Aligned_cols=53  Identities=9%  Similarity=-0.061  Sum_probs=43.7

Q ss_pred             CcceEEee-CCCHHHHHHHHhcCcEEEecCCCc----cchhHHHHHHHHHcC-C-CeeeC
Q psy12849         31 TNRTTVVN-TINESSILIMAKKCRVILNCVGPY----TWYGEAVVKACIEAK-T-HHVDI   83 (138)
Q Consensus        31 ~~~~~~~D-~~d~~~L~~~~~~~dvVIn~~GPf----~~~~~~v~~Aci~~g-~-hYvDi   83 (138)
                      +++++..| +.|++++.++++++|+||++++++    ...+..++++|.+.| + ++|=+
T Consensus        52 ~v~~v~~D~l~d~~~l~~~~~~~d~Vi~~a~~~~~~~~~~~~~l~~aa~~~g~v~~~V~~  111 (352)
T 1xgk_A           52 NVTLFQGPLLNNVPLMDTLFEGAHLAFINTTSQAGDEIAIGKDLADAAKRAGTIQHYIYS  111 (352)
T ss_dssp             TEEEEESCCTTCHHHHHHHHTTCSEEEECCCSTTSCHHHHHHHHHHHHHHHSCCSEEEEE
T ss_pred             CcEEEECCccCCHHHHHHHHhcCCEEEEcCCCCCcHHHHHHHHHHHHHHHcCCccEEEEe
Confidence            57888999 999999999999999999998775    234678999999998 5 44443

>3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding, oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB: 3rfv_A* 3rfx_A*

Probab=95.81  E-value=0.022  Score=43.41  Aligned_cols=53  Identities=11%  Similarity=0.030  Sum_probs=41.6

Q ss_pred             CCcceEEeeCCCHHHHHHHHhcCcEEEecCCCccchh------------HHHHHHHHHcCC-Ceee
Q psy12849         30 RTNRTTVVNTINESSILIMAKKCRVILNCVGPYTWYG------------EAVVKACIEAKT-HHVD   82 (138)
Q Consensus        30 ~~~~~~~~D~~d~~~L~~~~~~~dvVIn~~GPf~~~~------------~~v~~Aci~~g~-hYvD   82 (138)
                      .++.++.+|+.|++++.+++++.|+|||++|......            ..++++|.+.|. +.|=
T Consensus        43 ~~~~~~~~Dl~d~~~~~~~~~~~D~vi~~Ag~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iv~  108 (267)
T 3rft_A           43 PNEECVQCDLADANAVNAMVAGCDGIVHLGGISVEKPFEQILQGNIIGLYNLYEAARAHGQPRIVF  108 (267)
T ss_dssp             TTEEEEECCTTCHHHHHHHHTTCSEEEECCSCCSCCCHHHHHHHHTHHHHHHHHHHHHTTCCEEEE
T ss_pred             CCCEEEEcCCCCHHHHHHHHcCCCEEEECCCCcCcCCHHHHHHHHHHHHHHHHHHHHHcCCCEEEE
Confidence            4678999999999999999999999999999743211            257788888775 4443

>2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A*

Probab=95.69  E-value=0.024  Score=44.22  Aligned_cols=52  Identities=12%  Similarity=-0.016  Sum_probs=41.9

Q ss_pred             CCcceEEeeCCCHHHHHHHHh--cCcEEEecCCCccc-------------hhHHHHHHHHHcCC-Cee
Q psy12849         30 RTNRTTVVNTINESSILIMAK--KCRVILNCVGPYTW-------------YGEAVVKACIEAKT-HHV   81 (138)
Q Consensus        30 ~~~~~~~~D~~d~~~L~~~~~--~~dvVIn~~GPf~~-------------~~~~v~~Aci~~g~-hYv   81 (138)
                      .++.++.+|+.|++++.++++  ++|+||||+|+...             -...++++|.+.|+ ++|
T Consensus        65 ~~v~~~~~Dl~d~~~~~~~~~~~~~D~vih~A~~~~~~~~~~~~~~~N~~~~~~l~~a~~~~~~~~iV  132 (330)
T 2pzm_A           65 AGLSVIEGSVTDAGLLERAFDSFKPTHVVHSAAAYKDPDDWAEDAATNVQGSINVAKAASKAGVKRLL  132 (330)
T ss_dssp             TTEEEEECCTTCHHHHHHHHHHHCCSEEEECCCCCSCTTCHHHHHHHHTHHHHHHHHHHHHHTCSEEE
T ss_pred             CCceEEEeeCCCHHHHHHHHhhcCCCEEEECCccCCCccccChhHHHHHHHHHHHHHHHHHcCCCEEE
Confidence            356789999999999999999  99999999997542             02468899998886 443

>3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD binding, isomerase; HET: NAD; 2.55A {Helicobacter pylori}

Probab=95.69  E-value=0.019  Score=45.32  Aligned_cols=55  Identities=4%  Similarity=-0.077  Sum_probs=43.6

Q ss_pred             CCcceEEeeCCCHHHHHHH-HhcCcEEEecCCCccch--------------hHHHHHHHHHcCCCeeeCC
Q psy12849         30 RTNRTTVVNTINESSILIM-AKKCRVILNCVGPYTWY--------------GEAVVKACIEAKTHHVDIT   84 (138)
Q Consensus        30 ~~~~~~~~D~~d~~~L~~~-~~~~dvVIn~~GPf~~~--------------~~~v~~Aci~~g~hYvDis   84 (138)
                      .++.++.+|+.|++++.++ ..++|+||||+|+....              ...++++|.+.|+.+|=+|
T Consensus        68 ~~~~~~~~Dl~d~~~~~~~~~~~~D~vih~A~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~~~~~V~~S  137 (362)
T 3sxp_A           68 FKGEVIAADINNPLDLRRLEKLHFDYLFHQAAVSDTTMLNQELVMKTNYQAFLNLLEIARSKKAKVIYAS  137 (362)
T ss_dssp             CCSEEEECCTTCHHHHHHHTTSCCSEEEECCCCCGGGCCCHHHHHHHHTHHHHHHHHHHHHTTCEEEEEE
T ss_pred             cCceEEECCCCCHHHHHHhhccCCCEEEECCccCCccccCHHHHHHHHHHHHHHHHHHHHHcCCcEEEeC
Confidence            4568999999999999999 88999999999965421              1368899988887655443

>2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad, SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A {Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A* 2gna_A*

Probab=95.68  E-value=0.022  Score=45.25  Aligned_cols=56  Identities=7%  Similarity=0.116  Sum_probs=44.9

Q ss_pred             CCcceEEeeCCCHHHHHHHHhcCcEEEecCCCccch----------------hHHHHHHHHHcCC-CeeeCCC
Q psy12849         30 RTNRTTVVNTINESSILIMAKKCRVILNCVGPYTWY----------------GEAVVKACIEAKT-HHVDITG   85 (138)
Q Consensus        30 ~~~~~~~~D~~d~~~L~~~~~~~dvVIn~~GPf~~~----------------~~~v~~Aci~~g~-hYvDisg   85 (138)
                      .++.++.+|+.|.+++.++++++|+|||++|.....                ...++++|.+.|+ +.|=+|.
T Consensus        70 ~~v~~~~~Dl~d~~~l~~~~~~~D~Vih~Aa~~~~~~~~~~~~~~~~~Nv~gt~~l~~aa~~~~v~~~V~~SS  142 (344)
T 2gn4_A           70 PRMRFFIGDVRDLERLNYALEGVDICIHAAALKHVPIAEYNPLECIKTNIMGASNVINACLKNAISQVIALST  142 (344)
T ss_dssp             TTEEEEECCTTCHHHHHHHTTTCSEEEECCCCCCHHHHHHSHHHHHHHHHHHHHHHHHHHHHTTCSEEEEECC
T ss_pred             CCEEEEECCCCCHHHHHHHHhcCCEEEECCCCCCCCchhcCHHHHHHHHHHHHHHHHHHHHhCCCCEEEEecC
Confidence            468899999999999999999999999999865311                1468999999987 4555543

>1p9l_A Dihydrodipicolinate reductase; oxidoreductase, lysine biosynthesis, NADH binding specificity, TB structural genomics consortium; HET: NAD PDC PG4; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3 PDB: 1c3v_A* 1yl5_A 1yl7_A* 1yl6_A*

Probab=95.68  E-value=0.04  Score=42.83  Aligned_cols=72  Identities=13%  Similarity=0.077  Sum_probs=50.4

Q ss_pred             HHHHHh-cCcEEEecCCCccchhHHHHHHHHHcCCCeee-CCCChHHHHHHHHHhHHHHHhC-CCEEEeCCCCccchHhH
Q psy12849         45 ILIMAK-KCRVILNCVGPYTWYGEAVVKACIEAKTHHVD-ITGEPYFMEYMQYEYNTRAQES-EVCVVSACGIETLPIDM  121 (138)
Q Consensus        45 L~~~~~-~~dvVIn~~GPf~~~~~~v~~Aci~~g~hYvD-isge~~~~~~~~~~~~~~A~~~-gv~iv~~~G~d~~p~dl  121 (138)
                      +..++. ++|+||++..|-..  ...++.|+++|+|.|= .+|-.+   +-...+.+.++++ ++.++.+..|..++..+
T Consensus        38 l~~~~~~~~DvvIDfT~p~a~--~~~~~~a~~~g~~~VigTTG~~~---e~~~~l~~aa~~~~~~~vv~a~N~siGv~ll  112 (245)
T 1p9l_A           38 LSLLTDGNTEVVIDFTHPDVV--MGNLEFLIDNGIHAVVGTTGFTA---ERFQQVESWLVAKPNTSVLIAPNFAIGAVLS  112 (245)
T ss_dssp             THHHHHTTCCEEEECSCTTTH--HHHHHHHHHTTCEEEECCCCCCH---HHHHHHHHHHHTSTTCEEEECSCCCHHHHHH
T ss_pred             HHHHhccCCcEEEEccChHHH--HHHHHHHHHcCCCEEEcCCCCCH---HHHHHHHHHHHhCCCCCEEEECCccHHHHHH
Confidence            444554 89999999988654  5789999999998865 445322   2223556667766 88888888885555443

>3ay3_A NAD-dependent epimerase/dehydratase; glucuronic acid dehydrogeanse, oxidoreductase; 2.10A {Chromohalobacter salexigens}

Probab=95.66  E-value=0.019  Score=43.36  Aligned_cols=51  Identities=12%  Similarity=0.109  Sum_probs=40.7

Q ss_pred             CcceEEeeCCCHHHHHHHHhcCcEEEecCCCccch------------hHHHHHHHHHcCC-Cee
Q psy12849         31 TNRTTVVNTINESSILIMAKKCRVILNCVGPYTWY------------GEAVVKACIEAKT-HHV   81 (138)
Q Consensus        31 ~~~~~~~D~~d~~~L~~~~~~~dvVIn~~GPf~~~------------~~~v~~Aci~~g~-hYv   81 (138)
                      ++.++.+|+.|++++.++++++|+||||+|+....            ...++++|.+.|+ +.|
T Consensus        43 ~~~~~~~Dl~d~~~~~~~~~~~d~vi~~a~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~iv  106 (267)
T 3ay3_A           43 HEEIVACDLADAQAVHDLVKDCDGIIHLGGVSVERPWNDILQANIIGAYNLYEAARNLGKPRIV  106 (267)
T ss_dssp             TEEECCCCTTCHHHHHHHHTTCSEEEECCSCCSCCCHHHHHHHTHHHHHHHHHHHHHTTCCEEE
T ss_pred             CccEEEccCCCHHHHHHHHcCCCEEEECCcCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCEEE
Confidence            45788899999999999999999999999874211            1468889988876 444

>2hun_A 336AA long hypothetical DTDP-glucose 4,6-dehydrat; rossmann fold, structural genomics, NPPSFA; HET: NAD; 2.07A {Pyrococcus horikoshii}

Probab=95.62  E-value=0.022  Score=44.15  Aligned_cols=49  Identities=2%  Similarity=-0.064  Sum_probs=40.0

Q ss_pred             CCcceEEeeCCCHHHHHHHHhcCcEEEecCCCccch----------------hHHHHHHHHHcCC
Q psy12849         30 RTNRTTVVNTINESSILIMAKKCRVILNCVGPYTWY----------------GEAVVKACIEAKT   78 (138)
Q Consensus        30 ~~~~~~~~D~~d~~~L~~~~~~~dvVIn~~GPf~~~----------------~~~v~~Aci~~g~   78 (138)
                      .++.++.+|+.|++++.+++.++|+||||+|+....                ...++++|.+.+.
T Consensus        54 ~~~~~~~~Dl~d~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~  118 (336)
T 2hun_A           54 PRYTFVKGDVADYELVKELVRKVDGVVHLAAESHVDRSISSPEIFLHSNVIGTYTLLESIRRENP  118 (336)
T ss_dssp             TTEEEEECCTTCHHHHHHHHHTCSEEEECCCCCCHHHHHHCTHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred             CceEEEEcCCCCHHHHHHHhhCCCEEEECCCCcChhhhhhCHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            357789999999999999999999999999975310                2367899998764

>3ajr_A NDP-sugar epimerase; L-threonine dehydrogenase, L-3- hydroxynorvaline, oxidoreductase; HET: NAD; 1.77A {Thermoplasma volcanium} PDB: 3a9w_A* 3a4v_A* 3a1n_A*

Probab=95.61  E-value=0.023  Score=43.66  Aligned_cols=51  Identities=12%  Similarity=0.094  Sum_probs=41.1

Q ss_pred             CcceEEeeCCCHHHHHHHHh--cCcEEEecCCCccch---------------hHHHHHHHHHcCC-Cee
Q psy12849         31 TNRTTVVNTINESSILIMAK--KCRVILNCVGPYTWY---------------GEAVVKACIEAKT-HHV   81 (138)
Q Consensus        31 ~~~~~~~D~~d~~~L~~~~~--~~dvVIn~~GPf~~~---------------~~~v~~Aci~~g~-hYv   81 (138)
                      ++.++.+|+.|++++.++++  ++|+||||+|+....               ...++++|.+.|+ ++|
T Consensus        40 ~~~~~~~D~~d~~~~~~~~~~~~~d~vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~v  108 (317)
T 3ajr_A           40 GIKFITLDVSNRDEIDRAVEKYSIDAIFHLAGILSAKGEKDPALAYKVNMNGTYNILEAAKQHRVEKVV  108 (317)
T ss_dssp             TCCEEECCTTCHHHHHHHHHHTTCCEEEECCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEE
T ss_pred             CceEEEecCCCHHHHHHHHhhcCCcEEEECCcccCCccccChHHHhhhhhHHHHHHHHHHHHcCCCEEE
Confidence            46789999999999999999  899999999975321               1468899999887 443

>3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus}

Probab=95.61  E-value=0.026  Score=43.54  Aligned_cols=48  Identities=8%  Similarity=0.099  Sum_probs=41.2

Q ss_pred             CcceEEeeCCCHHHHHHHHhcCcEEEecCCCccch------------hHHHHHHHHHcCCC
Q psy12849         31 TNRTTVVNTINESSILIMAKKCRVILNCVGPYTWY------------GEAVVKACIEAKTH   79 (138)
Q Consensus        31 ~~~~~~~D~~d~~~L~~~~~~~dvVIn~~GPf~~~------------~~~v~~Aci~~g~h   79 (138)
                      +++++..|+. ++++.++++++|+||||+|+....            ...++++|.+.|+.
T Consensus        43 ~~~~~~~Dl~-~~~~~~~~~~~d~Vih~a~~~~~~~~~~~~~~n~~~~~~ll~a~~~~~~~  102 (311)
T 3m2p_A           43 DYEYRVSDYT-LEDLINQLNDVDAVVHLAATRGSQGKISEFHDNEILTQNLYDACYENNIS  102 (311)
T ss_dssp             CCEEEECCCC-HHHHHHHTTTCSEEEECCCCCCSSSCGGGTHHHHHHHHHHHHHHHHTTCC
T ss_pred             ceEEEEcccc-HHHHHHhhcCCCEEEEccccCCCCChHHHHHHHHHHHHHHHHHHHHcCCC
Confidence            6788999999 999999999999999999975321            25789999999876

>2ggs_A 273AA long hypothetical DTDP-4-dehydrorhamnose reductase; alpha, beta, oxidoreductase; HET: NDP; 1.70A {Sulfolobus tokodaii}

Probab=95.56  E-value=0.021  Score=42.90  Aligned_cols=49  Identities=16%  Similarity=0.027  Sum_probs=39.5

Q ss_pred             EEeeCCCHHHHHHHHhc--CcEEEecCCCccch----------------hHHHHHHHHHcCCCeeeC
Q psy12849         35 TVVNTINESSILIMAKK--CRVILNCVGPYTWY----------------GEAVVKACIEAKTHHVDI   83 (138)
Q Consensus        35 ~~~D~~d~~~L~~~~~~--~dvVIn~~GPf~~~----------------~~~v~~Aci~~g~hYvDi   83 (138)
                      +.+|+.|++++.+++++  +|+||||+|+....                ...++++|.+.|.++|=+
T Consensus        39 ~~~Dl~~~~~~~~~~~~~~~d~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~iv~~  105 (273)
T 2ggs_A           39 YKLDLTDFPRLEDFIIKKRPDVIINAAAMTDVDKCEIEKEKAYKINAEAVRHIVRAGKVIDSYIVHI  105 (273)
T ss_dssp             EECCTTSHHHHHHHHHHHCCSEEEECCCCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTTCEEEEE
T ss_pred             ceeccCCHHHHHHHHHhcCCCEEEECCcccChhhhhhCHHHHHHHhHHHHHHHHHHHHHhCCeEEEE
Confidence            77999999999999997  99999999975421                247888898888776643

>1dih_A Dihydrodipicolinate reductase; oxidoreductase; HET: NDP; 2.20A {Escherichia coli} SCOP: c.2.1.3 d.81.1.3 PDB: 1arz_A* 1dru_A* 1drv_A* 1drw_A*

Probab=95.55  E-value=0.0027  Score=50.15  Aligned_cols=80  Identities=14%  Similarity=0.002  Sum_probs=49.4

Q ss_pred             HHHHHhcCcEEEecCCCccchhHHHHHHHHHcCCCeee-CCCChHHHHHHHHHhHHHHHhCCCEEEeCCCCccchHhHHH
Q psy12849         45 ILIMAKKCRVILNCVGPYTWYGEAVVKACIEAKTHHVD-ITGEPYFMEYMQYEYNTRAQESEVCVVSACGIETLPIDMGV  123 (138)
Q Consensus        45 L~~~~~~~dvVIn~~GPf~~~~~~v~~Aci~~g~hYvD-isge~~~~~~~~~~~~~~A~~~gv~iv~~~G~d~~p~dl~~  123 (138)
                      +.++++++|+||+++.|...  ...+++|+++|+|.|= .+|-.   ..-..++.+.+++.+  ++.+..|..++..++-
T Consensus        66 l~~~l~~~DvVIDft~p~~~--~~~~~~a~~~G~~vVigTtG~~---~e~~~~L~~~a~~~~--vv~a~N~siGvn~~~~  138 (273)
T 1dih_A           66 LDAVKDDFDVFIDFTRPEGT--LNHLAFCRQHGKGMVIGTTGFD---EAGKQAIRDAAADIA--IVFAANFSVGVNVMLK  138 (273)
T ss_dssp             STTTTTSCSEEEECSCHHHH--HHHHHHHHHTTCEEEECCCCCC---HHHHHHHHHHTTTSC--EEECSCCCHHHHHHHH
T ss_pred             HHHHhcCCCEEEEcCChHHH--HHHHHHHHhCCCCEEEECCCCC---HHHHHHHHHhcCCCC--EEEEecCcHHHHHHHH
Confidence            45566789999999988643  5789999999999876 44422   222335555555544  5555555444433222


Q ss_pred             --HHHHHHhh
Q psy12849        124 --LMLQDSFE  131 (138)
Q Consensus       124 --~~~~~~~~  131 (138)
                        ..+++.|.
T Consensus       139 l~~~aa~~~~  148 (273)
T 1dih_A          139 LLEKAAKVMG  148 (273)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHhcC
Confidence              35555553

>1orr_A CDP-tyvelose-2-epimerase; rossmann fold, short-chain dehydrogenase/reductase, isomeras; HET: NAD CDP; 1.50A {Salmonella typhi} SCOP: c.2.1.2

Probab=95.52  E-value=0.027  Score=43.67  Aligned_cols=50  Identities=8%  Similarity=0.019  Sum_probs=41.3

Q ss_pred             CCcceEEeeCCCHHHHHHHHhc--CcEEEecCCCccch----------------hHHHHHHHHHcCCC
Q psy12849         30 RTNRTTVVNTINESSILIMAKK--CRVILNCVGPYTWY----------------GEAVVKACIEAKTH   79 (138)
Q Consensus        30 ~~~~~~~~D~~d~~~L~~~~~~--~dvVIn~~GPf~~~----------------~~~v~~Aci~~g~h   79 (138)
                      .+++++.+|+.|++++.+++++  +|+||||+|+....                ...++++|.+.++.
T Consensus        50 ~~~~~~~~Dl~d~~~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~nv~~~~~l~~a~~~~~~~  117 (347)
T 1orr_A           50 GNFEFVHGDIRNKNDVTRLITKYMPDSCFHLAGQVAMTTSIDNPCMDFEINVGGTLNLLEAVRQYNSN  117 (347)
T ss_dssp             CCCEEEECCTTCHHHHHHHHHHHCCSEEEECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred             CceEEEEcCCCCHHHHHHHHhccCCCEEEECCcccChhhhhhCHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            3588999999999999999999  99999999975420                13688999998864

>2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A

Probab=95.43  E-value=0.0076  Score=44.72  Aligned_cols=53  Identities=13%  Similarity=0.046  Sum_probs=41.4

Q ss_pred             CcceEEeeCCCHHHHHHHHhcCcEEEecCCCccc-------------hhHHHHHHHHHcCC-CeeeC
Q psy12849         31 TNRTTVVNTINESSILIMAKKCRVILNCVGPYTW-------------YGEAVVKACIEAKT-HHVDI   83 (138)
Q Consensus        31 ~~~~~~~D~~d~~~L~~~~~~~dvVIn~~GPf~~-------------~~~~v~~Aci~~g~-hYvDi   83 (138)
                      ++.++.+|+.|++++.++++++|+||||+|+...             ....++++|.+.|. ++|=+
T Consensus        64 ~~~~~~~D~~d~~~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~iv~~  130 (242)
T 2bka_A           64 NVNQEVVDFEKLDDYASAFQGHDVGFCCLGTTRGKAGAEGFVRVDRDYVLKSAELAKAGGCKHFNLL  130 (242)
T ss_dssp             GCEEEECCGGGGGGGGGGGSSCSEEEECCCCCHHHHHHHHHHHHHTHHHHHHHHHHHHTTCCEEEEE
T ss_pred             CceEEecCcCCHHHHHHHhcCCCEEEECCCcccccCCcccceeeeHHHHHHHHHHHHHCCCCEEEEE
Confidence            4678899999999999999999999999997532             12467788888875 44433

>2c20_A UDP-glucose 4-epimerase; carbohydrate metabolism, galactose metabolism, isomerase, NAD, spine; HET: NAD; 2.7A {Bacillus anthracis}

Probab=95.23  E-value=0.037  Score=42.75  Aligned_cols=51  Identities=4%  Similarity=-0.055  Sum_probs=41.3

Q ss_pred             CcceEEeeCCCHHHHHHHHh--cCcEEEecCCCccc----------------hhHHHHHHHHHcCC-Cee
Q psy12849         31 TNRTTVVNTINESSILIMAK--KCRVILNCVGPYTW----------------YGEAVVKACIEAKT-HHV   81 (138)
Q Consensus        31 ~~~~~~~D~~d~~~L~~~~~--~~dvVIn~~GPf~~----------------~~~~v~~Aci~~g~-hYv   81 (138)
                      +++++.+|+.|++++.++++  ++|+||||+|+...                ....++++|.+.|+ ++|
T Consensus        45 ~~~~~~~D~~~~~~~~~~~~~~~~d~vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~v  114 (330)
T 2c20_A           45 GAKFYNGDLRDKAFLRDVFTQENIEAVMHFAADSLVGVSMEKPLQYYNNNVYGALCLLEVMDEFKVDKFI  114 (330)
T ss_dssp             TSEEEECCTTCHHHHHHHHHHSCEEEEEECCCCCCHHHHHHSHHHHHHHHHHHHHHHHHHHHHTTCCEEE
T ss_pred             CcEEEECCCCCHHHHHHHHhhcCCCEEEECCcccCccccccCHHHHHHHHhHHHHHHHHHHHHcCCCEEE
Confidence            57889999999999999999  89999999997631                12468889998885 344

>1ek6_A UDP-galactose 4-epimerase; short-chain dehydrogenase, galactosemia, isomerase; HET: NAI UPG; 1.50A {Homo sapiens} SCOP: c.2.1.2 PDB: 1ek5_A* 1hzj_A* 1i3k_A* 1i3l_A* 1i3m_A* 1i3n_A*

Probab=95.13  E-value=0.044  Score=42.64  Aligned_cols=49  Identities=6%  Similarity=0.067  Sum_probs=40.1

Q ss_pred             CCcceEEeeCCCHHHHHHHHh--cCcEEEecCCCccc----------------hhHHHHHHHHHcCC
Q psy12849         30 RTNRTTVVNTINESSILIMAK--KCRVILNCVGPYTW----------------YGEAVVKACIEAKT   78 (138)
Q Consensus        30 ~~~~~~~~D~~d~~~L~~~~~--~~dvVIn~~GPf~~----------------~~~~v~~Aci~~g~   78 (138)
                      .++.++.+|+.|++++.++++  ++|+||||+|+...                -...++++|.+.|+
T Consensus        58 ~~~~~~~~D~~~~~~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~  124 (348)
T 1ek6_A           58 RSVEFEEMDILDQGALQRLFKKYSFMAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLLEIMKAHGV  124 (348)
T ss_dssp             CCCEEEECCTTCHHHHHHHHHHCCEEEEEECCSCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             CceEEEECCCCCHHHHHHHHHhcCCCEEEECCCCcCccchhhchHHHHHHHHHHHHHHHHHHHHhCC
Confidence            367889999999999999999  79999999997531                12467889988875

>1gy8_A UDP-galactose 4-epimerase; oxidoreductase; HET: NAD UDP; 2.0A {Trypanosoma brucei} SCOP: c.2.1.2 PDB: 2cnb_A*

Probab=95.10  E-value=0.048  Score=43.27  Aligned_cols=47  Identities=11%  Similarity=-0.058  Sum_probs=39.4

Q ss_pred             cceEEeeCCCHHHHHHHHh--c-CcEEEecCCCccch----------------hHHHHHHHHHcCC
Q psy12849         32 NRTTVVNTINESSILIMAK--K-CRVILNCVGPYTWY----------------GEAVVKACIEAKT   78 (138)
Q Consensus        32 ~~~~~~D~~d~~~L~~~~~--~-~dvVIn~~GPf~~~----------------~~~v~~Aci~~g~   78 (138)
                      +.++.+|+.|++++.++++  + +|+||||+|+....                ...++++|.+.|+
T Consensus        71 ~~~~~~Dl~d~~~~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~Nv~g~~~ll~a~~~~~~  136 (397)
T 1gy8_A           71 AALEVGDVRNEDFLNGVFTRHGPIDAVVHMCAFLAVGESVRDPLKYYDNNVVGILRLLQAMLLHKC  136 (397)
T ss_dssp             CEEEESCTTCHHHHHHHHHHSCCCCEEEECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             EEEEECCCCCHHHHHHHHHhcCCCCEEEECCCccCcCcchhhHHHHHHHHhHHHHHHHHHHHHhCC
Confidence            7899999999999999998  6 99999999976421                2357899998886

>1kew_A RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fold, lyase; HET: TYD NAD; 1.80A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1g1a_A* 1keu_A* 1bxk_A*

Probab=95.09  E-value=0.04  Score=43.07  Aligned_cols=48  Identities=4%  Similarity=-0.036  Sum_probs=39.5

Q ss_pred             CcceEEeeCCCHHHHHHHHh--cCcEEEecCCCccc----------------hhHHHHHHHHHc--CC
Q psy12849         31 TNRTTVVNTINESSILIMAK--KCRVILNCVGPYTW----------------YGEAVVKACIEA--KT   78 (138)
Q Consensus        31 ~~~~~~~D~~d~~~L~~~~~--~~dvVIn~~GPf~~----------------~~~~v~~Aci~~--g~   78 (138)
                      ++.++.+|+.|++++.++++  ++|+||||+|+...                -...++++|.+.  |+
T Consensus        51 ~~~~~~~Dl~d~~~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~~v  118 (361)
T 1kew_A           51 RYNFEHADICDSAEITRIFEQYQPDAVMHLAAESHVDRSITGPAAFIETNIVGTYALLEVARKYWSAL  118 (361)
T ss_dssp             TEEEEECCTTCHHHHHHHHHHHCCSEEEECCSCCCHHHHHHCTHHHHHHHTHHHHHHHHHHHHHHHTS
T ss_pred             CeEEEECCCCCHHHHHHHHhhcCCCEEEECCCCcChhhhhhCHHHHHHHHHHHHHHHHHHHHHhccCc
Confidence            57889999999999999998  89999999997641                024678899887  64

>3sc6_A DTDP-4-dehydrorhamnose reductase; RFBD, structural genomics, infectious diseases, bacillus anthracis STR. AMES, rhamnose biosynthetic pathway; HET: NAP; 2.65A {Bacillus anthracis} SCOP: c.2.1.0

Probab=95.04  E-value=0.031  Score=42.42  Aligned_cols=48  Identities=17%  Similarity=0.190  Sum_probs=38.8

Q ss_pred             EeeCCCHHHHHHHHh--cCcEEEecCCCccch----------------hHHHHHHHHHcCCCeeeC
Q psy12849         36 VVNTINESSILIMAK--KCRVILNCVGPYTWY----------------GEAVVKACIEAKTHHVDI   83 (138)
Q Consensus        36 ~~D~~d~~~L~~~~~--~~dvVIn~~GPf~~~----------------~~~v~~Aci~~g~hYvDi   83 (138)
                      .+|+.|++++.++++  ++|+||||+|+....                ...++++|.+.|+++|=+
T Consensus        39 ~~D~~d~~~~~~~~~~~~~d~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~v~~  104 (287)
T 3sc6_A           39 LLDITNISQVQQVVQEIRPHIIIHCAAYTKVDQAEKERDLAYVINAIGARNVAVASQLVGAKLVYI  104 (287)
T ss_dssp             TSCTTCHHHHHHHHHHHCCSEEEECCCCCCHHHHTTCHHHHHHHHTHHHHHHHHHHHHHTCEEEEE
T ss_pred             ccCCCCHHHHHHHHHhcCCCEEEECCcccChHHHhcCHHHHHHHHHHHHHHHHHHHHHcCCeEEEE
Confidence            369999999999999  699999999976522                136899999999877643

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=94.98  E-value=0.36  Score=32.30  Aligned_cols=88  Identities=9%  Similarity=0.092  Sum_probs=57.7

Q ss_pred             cceEEeeCCCHHHHHHH-HhcCcEEEecCCCccchhHHHHHHHHHcCCCeeeC-CCChHHHHHHHHHhHHHHHhCCCEEE
Q psy12849         32 NRTTVVNTINESSILIM-AKKCRVILNCVGPYTWYGEAVVKACIEAKTHHVDI-TGEPYFMEYMQYEYNTRAQESEVCVV  109 (138)
Q Consensus        32 ~~~~~~D~~d~~~L~~~-~~~~dvVIn~~GPf~~~~~~v~~Aci~~g~hYvDi-sge~~~~~~~~~~~~~~A~~~gv~iv  109 (138)
                      ...+..|..+++.+.++ ++++|+||.|+|+.......+.+.|.+.|..++=. +...... +       ..++.|+..+
T Consensus        50 ~~~~~~d~~~~~~l~~~~~~~~d~vi~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~-~-------~l~~~g~~~v  121 (144)
T 2hmt_A           50 THAVIANATEENELLSLGIRNFEYVIVAIGANIQASTLTTLLLKELDIPNIWVKAQNYYHH-K-------VLEKIGADRI  121 (144)
T ss_dssp             SEEEECCTTCHHHHHTTTGGGCSEEEECCCSCHHHHHHHHHHHHHTTCSEEEEECCSHHHH-H-------HHHHHTCSEE
T ss_pred             CEEEEeCCCCHHHHHhcCCCCCCEEEECCCCchHHHHHHHHHHHHcCCCeEEEEeCCHHHH-H-------HHHHcCCCEE
Confidence            45677799898888876 88999999999764334456788888888776553 3332222 1       2233455433


Q ss_pred             eCCCCccchHhHHHHHHHHHhhhh
Q psy12849        110 SACGIETLPIDMGVLMLQDSFEGH  133 (138)
Q Consensus       110 ~~~G~d~~p~dl~~~~~~~~~~~~  133 (138)
                      .      .|....+..+.+.+..+
T Consensus       122 i------~p~~~~~~~l~~~~~~~  139 (144)
T 2hmt_A          122 I------HPEKDMGVKIAQSLSDE  139 (144)
T ss_dssp             E------CHHHHHHHHHHHHHHHH
T ss_pred             E------CccHHHHHHHHHHHhhc
Confidence            2      47777777777766654

>2v6g_A Progesterone 5-beta-reductase; tyrosine-dependent oxidoreductase, oxidoreductase, SDR, cardenolides, cardiac glycosides; HET: NAP; 2.3A {Digitalis lanata} PDB: 2v6f_A*

Probab=94.94  E-value=0.046  Score=42.69  Aligned_cols=47  Identities=6%  Similarity=-0.078  Sum_probs=38.8

Q ss_pred             CCcceEEeeCCCHHHHHHHHhc---CcEEEecCCCccc-----------hhHHHHHHHHHc
Q psy12849         30 RTNRTTVVNTINESSILIMAKK---CRVILNCVGPYTW-----------YGEAVVKACIEA   76 (138)
Q Consensus        30 ~~~~~~~~D~~d~~~L~~~~~~---~dvVIn~~GPf~~-----------~~~~v~~Aci~~   76 (138)
                      .+++++.+|+.|++++.+++++   +|+||||+|+...           ....++++|.+.
T Consensus        48 ~~~~~~~~Dl~d~~~~~~~~~~~~~~d~vih~a~~~~~~~~~~~~~n~~~~~~l~~a~~~~  108 (364)
T 2v6g_A           48 NPINYVQCDISDPDDSQAKLSPLTDVTHVFYVTWANRSTEQENCEANSKMFRNVLDAVIPN  108 (364)
T ss_dssp             SCCEEEECCTTSHHHHHHHHTTCTTCCEEEECCCCCCSSHHHHHHHHHHHHHHHHHHHTTT
T ss_pred             CceEEEEeecCCHHHHHHHHhcCCCCCEEEECCCCCcchHHHHHHHhHHHHHHHHHHHHHh
Confidence            3678899999999999999999   9999999996431           125788999887

>2q1s_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NADH complex, sugar binding protein; HET: NAI; 1.50A {Bordetella bronchiseptica} PDB: 2pzj_A* 2q1t_A* 2q1u_A*

Probab=94.92  E-value=0.021  Score=45.47  Aligned_cols=49  Identities=2%  Similarity=-0.063  Sum_probs=40.3

Q ss_pred             CCcceEEeeCCCHHHHHHHHhcCcEEEecCCCccch----------------hHHHHHHHHHc-CC
Q psy12849         30 RTNRTTVVNTINESSILIMAKKCRVILNCVGPYTWY----------------GEAVVKACIEA-KT   78 (138)
Q Consensus        30 ~~~~~~~~D~~d~~~L~~~~~~~dvVIn~~GPf~~~----------------~~~v~~Aci~~-g~   78 (138)
                      .+++++..|+.|++++.++++++|+||||+|+....                ...++++|.+. |+
T Consensus        78 ~~v~~~~~Dl~d~~~l~~~~~~~d~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~~  143 (377)
T 2q1s_A           78 PAVRFSETSITDDALLASLQDEYDYVFHLATYHGNQSSIHDPLADHENNTLTTLKLYERLKHFKRL  143 (377)
T ss_dssp             TTEEEECSCTTCHHHHHHCCSCCSEEEECCCCSCHHHHHHCHHHHHHHHTHHHHHHHHHHTTCSSC
T ss_pred             CceEEEECCCCCHHHHHHHhhCCCEEEECCCccCchhhhhCHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            356788999999999999999999999999975321                24688999888 75

>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}

Probab=94.80  E-value=0.02  Score=41.51  Aligned_cols=53  Identities=4%  Similarity=-0.059  Sum_probs=40.8

Q ss_pred             CCcceEEeeCCCHHHHHHHHhcCcEEEecCCCccc-------hhHHHHHHHHHcC-CCeeeCC
Q psy12849         30 RTNRTTVVNTINESSILIMAKKCRVILNCVGPYTW-------YGEAVVKACIEAK-THHVDIT   84 (138)
Q Consensus        30 ~~~~~~~~D~~d~~~L~~~~~~~dvVIn~~GPf~~-------~~~~v~~Aci~~g-~hYvDis   84 (138)
                      .+++++.+|+.|+++  +.++++|+||||+|+...       ....++++|.+.| .++|=++
T Consensus        42 ~~~~~~~~D~~d~~~--~~~~~~d~vi~~ag~~~~~~~~~~~~~~~l~~a~~~~~~~~~v~~S  102 (221)
T 3ew7_A           42 KDINILQKDIFDLTL--SDLSDQNVVVDAYGISPDEAEKHVTSLDHLISVLNGTVSPRLLVVG  102 (221)
T ss_dssp             SSSEEEECCGGGCCH--HHHTTCSEEEECCCSSTTTTTSHHHHHHHHHHHHCSCCSSEEEEEC
T ss_pred             CCCeEEeccccChhh--hhhcCCCEEEECCcCCccccchHHHHHHHHHHHHHhcCCceEEEEe
Confidence            578999999999887  788999999999998532       1257889998884 4555443

>1n2s_A DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold, sugar-nucleotide-binding domain; HET: NAD; 2.00A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1kc1_A* 1kc3_A* 1kbz_A*

Probab=94.79  E-value=0.022  Score=43.44  Aligned_cols=50  Identities=22%  Similarity=0.139  Sum_probs=40.1

Q ss_pred             ceEEeeCCCHHHHHHHHhc--CcEEEecCCCccch----------------hHHHHHHHHHcCCCeee
Q psy12849         33 RTTVVNTINESSILIMAKK--CRVILNCVGPYTWY----------------GEAVVKACIEAKTHHVD   82 (138)
Q Consensus        33 ~~~~~D~~d~~~L~~~~~~--~dvVIn~~GPf~~~----------------~~~v~~Aci~~g~hYvD   82 (138)
                      ..+.+|+.|++++.+++++  +|+||||+|+....                ...++++|.+.|+++|=
T Consensus        34 ~~~~~D~~d~~~~~~~~~~~~~d~vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~v~  101 (299)
T 1n2s_A           34 KEFCGDFSNPKGVAETVRKLRPDVIVNAAAHTAVDKAESEPELAQLLNATSVEAIAKAANETGAWVVH  101 (299)
T ss_dssp             SSSCCCTTCHHHHHHHHHHHCCSEEEECCCCCCHHHHTTCHHHHHHHHTHHHHHHHHHHTTTTCEEEE
T ss_pred             ccccccCCCHHHHHHHHHhcCCCEEEECcccCCHhhhhcCHHHHHHHHHHHHHHHHHHHHHcCCcEEE
Confidence            4567899999999999997  99999999975411                25788999988876654

>2z1m_A GDP-D-mannose dehydratase; short-chain dehydrogenase/reductase, lyase, structural genom NPPSFA; HET: NDP GDP; 2.00A {Aquifex aeolicus} PDB: 2z95_A*

Probab=94.78  E-value=0.029  Score=43.37  Aligned_cols=51  Identities=12%  Similarity=0.026  Sum_probs=40.4

Q ss_pred             CcceEEeeCCCHHHHHHHHhcC--cEEEecCCCccch----------------hHHHHHHHHHcCC--Cee
Q psy12849         31 TNRTTVVNTINESSILIMAKKC--RVILNCVGPYTWY----------------GEAVVKACIEAKT--HHV   81 (138)
Q Consensus        31 ~~~~~~~D~~d~~~L~~~~~~~--dvVIn~~GPf~~~----------------~~~v~~Aci~~g~--hYv   81 (138)
                      ++.++.+|+.|++++.++++++  |+||||+|+....                ...++++|.+.|+  +.|
T Consensus        53 ~~~~~~~Dl~d~~~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~~~~iv  123 (345)
T 2z1m_A           53 DVKIIHMDLLEFSNIIRTIEKVQPDEVYNLAAQSFVGVSFEQPILTAEVDAIGVLRILEALRTVKPDTKFY  123 (345)
T ss_dssp             TEEECCCCTTCHHHHHHHHHHHCCSEEEECCCCCCHHHHTTSHHHHHHHHTHHHHHHHHHHHHHCTTCEEE
T ss_pred             ceeEEECCCCCHHHHHHHHHhcCCCEEEECCCCcchhhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCceEE
Confidence            5778899999999999999974  9999999975311                2468899998874  454

>1vl0_A DTDP-4-dehydrorhamnose reductase, RFBD ortholog; structural joint center for structural genomics, JCSG, protein structu initiative; HET: NAI UNL; 2.05A {Clostridium acetobutylicum} SCOP: c.2.1.2

Probab=94.77  E-value=0.042  Score=41.75  Aligned_cols=48  Identities=17%  Similarity=0.182  Sum_probs=38.1

Q ss_pred             EeeCCCHHHHHHHHh--cCcEEEecCCCccch----------------hHHHHHHHHHcCCCeeeC
Q psy12849         36 VVNTINESSILIMAK--KCRVILNCVGPYTWY----------------GEAVVKACIEAKTHHVDI   83 (138)
Q Consensus        36 ~~D~~d~~~L~~~~~--~~dvVIn~~GPf~~~----------------~~~v~~Aci~~g~hYvDi   83 (138)
                      .+|+.|++++.++++  ++|+||||+|+....                ...++++|.+.|+++|=+
T Consensus        46 ~~Dl~d~~~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~nv~~~~~l~~a~~~~~~~iv~~  111 (292)
T 1vl0_A           46 DLDITNVLAVNKFFNEKKPNVVINCAAHTAVDKCEEQYDLAYKINAIGPKNLAAAAYSVGAEIVQI  111 (292)
T ss_dssp             TCCTTCHHHHHHHHHHHCCSEEEECCCCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHHTCEEEEE
T ss_pred             cCCCCCHHHHHHHHHhcCCCEEEECCccCCHHHHhcCHHHHHHHHHHHHHHHHHHHHHcCCeEEEe
Confidence            369999999999999  799999999975411                247889999988766543

>1j5p_A Aspartate dehydrogenase; TM1643, structural genomics, JCSG, protein structure initiative, joint center for structural G oxidoreductase; HET: NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.3 PDB: 1h2h_A*

Probab=94.73  E-value=0.015  Score=45.84  Aligned_cols=75  Identities=11%  Similarity=0.151  Sum_probs=54.0

Q ss_pred             HHHHHhcCcEEEecCCCccchhHHHHHHHHHcCCCeeeCCCChHHHHHHHHHhHHHHHhCCCEEEeCCCCccchHhHH
Q psy12849         45 ILIMAKKCRVILNCVGPYTWYGEAVVKACIEAKTHHVDITGEPYFMEYMQYEYNTRAQESEVCVVSACGIETLPIDMG  122 (138)
Q Consensus        45 L~~~~~~~dvVIn~~GPf~~~~~~v~~Aci~~g~hYvDisge~~~~~~~~~~~~~~A~~~gv~iv~~~G~d~~p~dl~  122 (138)
                      +++++.+.|+||-|++|...  ...++.++++|++.+-+|...-.-.++.+++.+.|++.|..+....|-.++ -|..
T Consensus        54 ~d~lla~pD~VVe~A~~~av--~e~~~~iL~aG~dvv~~S~gaLad~~l~~~L~~aA~~gg~~l~vpSGAi~G-lD~l  128 (253)
T 1j5p_A           54 EFQVPSDVSTVVECASPEAV--KEYSLQILKNPVNYIIISTSAFADEVFRERFFSELKNSPARVFFPSGAIGG-LDVL  128 (253)
T ss_dssp             SCCCCTTCCEEEECSCHHHH--HHHHHHHTTSSSEEEECCGGGGGSHHHHHHHHHHHHTCSCEEECCCTTCCC-HHHH
T ss_pred             HHHHhhCCCEEEECCCHHHH--HHHHHHHHHCCCCEEEcChhhhcCHHHHHHHHHHHHHCCCeEEecCCcccc-hhHH
Confidence            34455689999999987532  456899999999999987532111233457778899999999888997666 3443

>3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A

Probab=94.71  E-value=0.0062  Score=48.25  Aligned_cols=76  Identities=16%  Similarity=0.125  Sum_probs=50.9

Q ss_pred             HHHHHHhcCcEEEecCCCccchh---HHHHHHHHHcCCCeeeCCCChHHHHHHHHHhHHHHHhCCCEEEeCCCCccchHh
Q psy12849         44 SILIMAKKCRVILNCVGPYTWYG---EAVVKACIEAKTHHVDITGEPYFMEYMQYEYNTRAQESEVCVVSACGIETLPID  120 (138)
Q Consensus        44 ~L~~~~~~~dvVIn~~GPf~~~~---~~v~~Aci~~g~hYvDisge~~~~~~~~~~~~~~A~~~gv~iv~~~G~d~~p~d  120 (138)
                      ++.+.++++|+||||. |....+   .++-...+..+...+|+.+.|..+     .|-.+|+++|..+++|.+       
T Consensus       187 ~l~~~l~~~DiVInaT-p~Gm~~~~~~pi~~~~l~~~~~v~DlvY~P~~T-----~ll~~A~~~G~~~~~Gl~-------  253 (283)
T 3jyo_A          187 GIEDVIAAADGVVNAT-PMGMPAHPGTAFDVSCLTKDHWVGDVVYMPIET-----ELLKAARALGCETLDGTR-------  253 (283)
T ss_dssp             THHHHHHHSSEEEECS-STTSTTSCSCSSCGGGCCTTCEEEECCCSSSSC-----HHHHHHHHHTCCEECTHH-------
T ss_pred             HHHHHHhcCCEEEECC-CCCCCCCCCCCCCHHHhCCCCEEEEecCCCCCC-----HHHHHHHHCcCeEeCcHH-------
Confidence            4667788999999999 533221   133345667788889999876543     233568888998887655       


Q ss_pred             HHHHHHHHHhhh
Q psy12849        121 MGVLMLQDSFEG  132 (138)
Q Consensus       121 l~~~~~~~~~~~  132 (138)
                      |+.+.++.+|+-
T Consensus       254 MLv~Qa~~~f~l  265 (283)
T 3jyo_A          254 MAIHQAVDAFRL  265 (283)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            555666665553

>4b8w_A GDP-L-fucose synthase; oxidoreductase; HET: NAP GDP; 2.75A {Homo sapiens}

Probab=94.70  E-value=0.031  Score=42.31  Aligned_cols=49  Identities=6%  Similarity=0.047  Sum_probs=39.0

Q ss_pred             CcceEEeeCCCHHHHHHHHhc--CcEEEecCCCccch-----------------hHHHHHHHHHcCCC
Q psy12849         31 TNRTTVVNTINESSILIMAKK--CRVILNCVGPYTWY-----------------GEAVVKACIEAKTH   79 (138)
Q Consensus        31 ~~~~~~~D~~d~~~L~~~~~~--~dvVIn~~GPf~~~-----------------~~~v~~Aci~~g~h   79 (138)
                      .++.+.+|+.|++++.+++++  +|+||||+|+....                 ...++++|.+.|+.
T Consensus        39 ~~~~~~~D~~d~~~~~~~~~~~~~d~Vih~A~~~~~~~~~~~~~~~~~~~nv~gt~~ll~a~~~~~~~  106 (319)
T 4b8w_A           39 FVSSKDADLTDTAQTRALFEKVQPTHVIHLAAMVGGLFRNIKYNLDFWRKNVHMNDNVLHSAFEVGAR  106 (319)
T ss_dssp             ECCTTTCCTTSHHHHHHHHHHSCCSEEEECCCCCCCHHHHTTCHHHHHHHHHHHHHHHHHHHHHTTCS
T ss_pred             ccCceecccCCHHHHHHHHhhcCCCEEEECceecccccccccCHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence            455667899999999999998  99999999984310                 13579999999874

>2c29_D Dihydroflavonol 4-reductase; flavonoids, short dehydrogenase reductase, NADPH, dihydroquercetin, rossmann fold, oxidoreductase; HET: NAP DQH; 1.81A {Vitis vinifera} PDB: 2iod_A* 2nnl_D* 3bxx_A* 3c1t_A*

Probab=94.68  E-value=0.029  Score=43.62  Aligned_cols=47  Identities=19%  Similarity=0.247  Sum_probs=38.3

Q ss_pred             CcceEEeeCCCHHHHHHHHhcCcEEEecCCCccch---------------hHHHHHHHHHcC
Q psy12849         31 TNRTTVVNTINESSILIMAKKCRVILNCVGPYTWY---------------GEAVVKACIEAK   77 (138)
Q Consensus        31 ~~~~~~~D~~d~~~L~~~~~~~dvVIn~~GPf~~~---------------~~~v~~Aci~~g   77 (138)
                      ++++++.|+.|++++.++++++|+|||++||+...               ...++++|.+.+
T Consensus        57 ~~~~~~~Dl~d~~~~~~~~~~~d~Vih~A~~~~~~~~~~~~~~~~~nv~gt~~ll~a~~~~~  118 (337)
T 2c29_D           57 HLTLWKADLADEGSFDEAIKGCTGVFHVATPMDFESKDPENEVIKPTIEGMLGIMKSCAAAK  118 (337)
T ss_dssp             HEEEEECCTTSTTTTHHHHTTCSEEEECCCCCCSSCSSHHHHTHHHHHHHHHHHHHHHHHHS
T ss_pred             eEEEEEcCCCCHHHHHHHHcCCCEEEEeccccCCCCCChHHHHHHHHHHHHHHHHHHHHhCC
Confidence            46788999999999999999999999999985311               135788898876

>1i24_A Sulfolipid biosynthesis protein SQD1; SDR, short-chain dehydrogenase/reductase, rossmann fold, BIO protein; HET: NAD UPG; 1.20A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1i2c_A* 1i2b_A* 1qrr_A*

Probab=94.61  E-value=0.084  Score=41.85  Aligned_cols=49  Identities=10%  Similarity=-0.133  Sum_probs=40.0

Q ss_pred             CCcceEEeeCCCHHHHHHHHhc--CcEEEecCCCccch-------------------hHHHHHHHHHcCC
Q psy12849         30 RTNRTTVVNTINESSILIMAKK--CRVILNCVGPYTWY-------------------GEAVVKACIEAKT   78 (138)
Q Consensus        30 ~~~~~~~~D~~d~~~L~~~~~~--~dvVIn~~GPf~~~-------------------~~~v~~Aci~~g~   78 (138)
                      .++.++.+|+.|++++.+++++  +|+||||+|+....                   ...++++|.+.|+
T Consensus        77 ~~v~~~~~Dl~d~~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~gt~~ll~a~~~~~~  146 (404)
T 1i24_A           77 KSIELYVGDICDFEFLAESFKSFEPDSVVHFGEQRSAPYSMIDRSRAVYTQHNNVIGTLNVLFAIKEFGE  146 (404)
T ss_dssp             CCCEEEESCTTSHHHHHHHHHHHCCSEEEECCSCCCHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred             CceEEEECCCCCHHHHHHHHhccCCCEEEECCCCCCccchhhCccchhhhHHHHHHHHHHHHHHHHHhCC
Confidence            4688999999999999999998  99999999974310                   1367889988874

>2ydy_A Methionine adenosyltransferase 2 subunit beta; oxidoreductase; 2.25A {Homo sapiens} PDB: 2ydx_A

Probab=94.49  E-value=0.022  Score=43.86  Aligned_cols=49  Identities=12%  Similarity=0.157  Sum_probs=26.6

Q ss_pred             eEEeeCCCHHHHHHHHhc--CcEEEecCCCccch----------------hHHHHHHHHHcCCCeee
Q psy12849         34 TTVVNTINESSILIMAKK--CRVILNCVGPYTWY----------------GEAVVKACIEAKTHHVD   82 (138)
Q Consensus        34 ~~~~D~~d~~~L~~~~~~--~dvVIn~~GPf~~~----------------~~~v~~Aci~~g~hYvD   82 (138)
                      ++.+|+.|++++.+++++  +|+||||+|+....                ...++++|.+.|+++|=
T Consensus        41 ~~~~Dl~d~~~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~v~  107 (315)
T 2ydy_A           41 FEQVNLLDSNAVHHIIHDFQPHVIVHCAAERRPDVVENQPDAASQLNVDASGNLAKEAAAVGAFLIY  107 (315)
T ss_dssp             -----------CHHHHHHHCCSEEEECC-------------------CHHHHHHHHHHHHHTCEEEE
T ss_pred             eEEecCCCHHHHHHHHHhhCCCEEEECCcccChhhhhcCHHHHHHHHHHHHHHHHHHHHHcCCeEEE
Confidence            677899999999999986  89999999975321                24688999998877653

>1rpn_A GDP-mannose 4,6-dehydratase; short-chain dehydrogenase/reductase, rossmann fold, lyase; HET: NDP GDP; 2.15A {Pseudomonas aeruginosa} SCOP: c.2.1.2

Probab=94.48  E-value=0.041  Score=42.56  Aligned_cols=51  Identities=8%  Similarity=-0.092  Sum_probs=40.3

Q ss_pred             CcceEEeeCCCHHHHHHHHhc--CcEEEecCCCccch----------------hHHHHHHHHHcCC--Cee
Q psy12849         31 TNRTTVVNTINESSILIMAKK--CRVILNCVGPYTWY----------------GEAVVKACIEAKT--HHV   81 (138)
Q Consensus        31 ~~~~~~~D~~d~~~L~~~~~~--~dvVIn~~GPf~~~----------------~~~v~~Aci~~g~--hYv   81 (138)
                      ++.++.+|+.|++++.+++++  .|+||||+|+....                ...++++|.+.|+  ++|
T Consensus        64 ~~~~~~~Dl~d~~~~~~~~~~~~~d~Vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~~v  134 (335)
T 1rpn_A           64 DIQYEDGDMADACSVQRAVIKAQPQEVYNLAAQSFVGASWNQPVTTGVVDGLGVTHLLEAIRQFSPETRFY  134 (335)
T ss_dssp             GEEEEECCTTCHHHHHHHHHHHCCSEEEECCSCCCHHHHTTSHHHHHHHHTHHHHHHHHHHHHHCTTSEEE
T ss_pred             ceEEEECCCCCHHHHHHHHHHcCCCEEEECccccchhhhhhChHHHHHHHHHHHHHHHHHHHHhCCCCeEE
Confidence            567889999999999999997  59999999975421                1368899998874  554

>3c8m_A Homoserine dehydrogenase; structural genomics, APC89447, PS protein structure initiative, midwest center for structural genomics; HET: MSE; 1.90A {Thermoplasma volcanium GSS1} PDB: 3jsa_A*

Probab=94.47  E-value=0.17  Score=40.57  Aligned_cols=67  Identities=13%  Similarity=0.090  Sum_probs=48.2

Q ss_pred             CHHHHHHHHhcCcEEEecCCCc--cchhHHHHHHHHHcCCCeeeCCCChHHHHHHHHHhHHHHHhCCCEEEeC
Q psy12849         41 NESSILIMAKKCRVILNCVGPY--TWYGEAVVKACIEAKTHHVDITGEPYFMEYMQYEYNTRAQESEVCVVSA  111 (138)
Q Consensus        41 d~~~L~~~~~~~dvVIn~~GPf--~~~~~~v~~Aci~~g~hYvDisge~~~~~~~~~~~~~~A~~~gv~iv~~  111 (138)
                      |.+++.  -...|+|+.|.++.  .......+..|+++|.|-|-.. ..+..... .++.+.|+++|+.+...
T Consensus        78 d~~~ll--~~~iDvVv~~t~~~~~~~~~~~~~~~AL~aGkhVvtan-K~pla~~~-~eL~~~A~~~gv~~~~e  146 (331)
T 3c8m_A           78 SASEAL--ARDFDIVVDATPASADGKKELAFYKETFENGKDVVTAN-KSGLANFW-PEIMEYARSNNRRIRYE  146 (331)
T ss_dssp             CHHHHH--HSSCSEEEECSCCCSSSHHHHHHHHHHHHTTCEEEECC-CHHHHHHH-HHHHHHHHHHTCCEECG
T ss_pred             CHHHHh--CCCCCEEEECCCCCCccchHHHHHHHHHHCCCeEEecC-chhhHHHH-HHHHHHHHHcCCEEEEE
Confidence            444443  24689999999775  2344578999999999999874 44554444 47778899999887654

>3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0

Probab=94.47  E-value=0.085  Score=40.83  Aligned_cols=49  Identities=6%  Similarity=-0.020  Sum_probs=40.0

Q ss_pred             CCcceEEeeCCCHHHHHHHHh--cCcEEEecCCCccch----------------hHHHHHHHHHcCC
Q psy12849         30 RTNRTTVVNTINESSILIMAK--KCRVILNCVGPYTWY----------------GEAVVKACIEAKT   78 (138)
Q Consensus        30 ~~~~~~~~D~~d~~~L~~~~~--~~dvVIn~~GPf~~~----------------~~~v~~Aci~~g~   78 (138)
                      .++.++.+|+.|++++.++++  ++|+|||++|.....                ...++++|.+.|+
T Consensus        55 ~~~~~~~~Dl~d~~~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~  121 (341)
T 3enk_A           55 KTPAFHETDVSDERALARIFDAHPITAAIHFAALKAVGESVAKPIEYYRNNLDSLLSLLRVMRERAV  121 (341)
T ss_dssp             CCCEEECCCTTCHHHHHHHHHHSCCCEEEECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             CCceEEEeecCCHHHHHHHHhccCCcEEEECccccccCccccChHHHHHHHHHHHHHHHHHHHhCCC
Confidence            367889999999999999999  899999999975311                2367888988875

>2bll_A Protein YFBG; decarboxylase, short chain dehydrogenase, L-ARA4N biosynthes methyltransferase, transferase; 2.3A {Escherichia coli} SCOP: c.2.1.2 PDB: 1u9j_A 1z73_A 1z75_A 1z7b_A 1z74_A

Probab=94.45  E-value=0.059  Score=41.64  Aligned_cols=54  Identities=17%  Similarity=0.116  Sum_probs=41.4

Q ss_pred             CCcceEEeeCCC-HHHHHHHHhcCcEEEecCCCccch----------------hHHHHHHHHHcCCCeeeC
Q psy12849         30 RTNRTTVVNTIN-ESSILIMAKKCRVILNCVGPYTWY----------------GEAVVKACIEAKTHHVDI   83 (138)
Q Consensus        30 ~~~~~~~~D~~d-~~~L~~~~~~~dvVIn~~GPf~~~----------------~~~v~~Aci~~g~hYvDi   83 (138)
                      .+++++.+|+.| .+.+.++++++|+||||+|.....                ...++++|.+.|.++|=+
T Consensus        45 ~~~~~~~~D~~~~~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~v~~  115 (345)
T 2bll_A           45 PHFHFVEGDISIHSEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRIIFP  115 (345)
T ss_dssp             TTEEEEECCTTTCSHHHHHHHHHCSEEEECBCCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHTTCEEEEE
T ss_pred             CCeEEEeccccCcHHHHHhhccCCCEEEEcccccCccchhcCHHHHHHHHHHHHHHHHHHHHHhCCeEEEE
Confidence            467889999998 467999999999999999864310                136789999888666543

>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT}

Probab=94.40  E-value=0.0093  Score=45.52  Aligned_cols=49  Identities=10%  Similarity=0.133  Sum_probs=39.5

Q ss_pred             CCcceEEeeCCCHHHHHHHHhc-CcEEEecCCCccc-----------hhHHHHHHHHHcCC
Q psy12849         30 RTNRTTVVNTINESSILIMAKK-CRVILNCVGPYTW-----------YGEAVVKACIEAKT   78 (138)
Q Consensus        30 ~~~~~~~~D~~d~~~L~~~~~~-~dvVIn~~GPf~~-----------~~~~v~~Aci~~g~   78 (138)
                      .+++++.+|+.|++++.+++++ +|+||||+|+...           ....++++|.+.|+
T Consensus        41 ~~~~~~~~Dl~d~~~~~~~~~~~~d~vih~a~~~~~~~~~~~~~n~~~~~~ll~a~~~~~~  101 (286)
T 3gpi_A           41 AGVQTLIADVTRPDTLASIVHLRPEILVYCVAASEYSDEHYRLSYVEGLRNTLSALEGAPL  101 (286)
T ss_dssp             TTCCEEECCTTCGGGCTTGGGGCCSEEEECHHHHHHC-----CCSHHHHHHHHHHTTTSCC
T ss_pred             cCCceEEccCCChHHHHHhhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHHHhhCCC
Confidence            5688999999999999999998 9999999987421           13467788877774

>1e6u_A GDP-fucose synthetase; epimerase/reductase, SDR, RED; HET: NAP; 1.45A {Escherichia coli} SCOP: c.2.1.2 PDB: 1e7q_A* 1bsv_A* 1fxs_A* 1gfs_A 1e7s_A* 1bws_A* 1e7r_A*

Probab=94.35  E-value=0.064  Score=41.18  Aligned_cols=47  Identities=4%  Similarity=0.022  Sum_probs=37.4

Q ss_pred             EeeCCCHHHHHHHHh--cCcEEEecCCCccc-----------------hhHHHHHHHHHcCC-Ceee
Q psy12849         36 VVNTINESSILIMAK--KCRVILNCVGPYTW-----------------YGEAVVKACIEAKT-HHVD   82 (138)
Q Consensus        36 ~~D~~d~~~L~~~~~--~~dvVIn~~GPf~~-----------------~~~~v~~Aci~~g~-hYvD   82 (138)
                      .+|+.|++++.++++  ++|+||||+|+...                 ....++++|.+.|+ ++|=
T Consensus        38 ~~D~~d~~~~~~~~~~~~~d~vih~a~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~  104 (321)
T 1e6u_A           38 ELNLLDSRAVHDFFASERIDQVYLAAAKVGGIVANNTYPADFIYQNMMIESNIIHAAHQNDVNKLLF  104 (321)
T ss_dssp             TCCTTCHHHHHHHHHHHCCSEEEECCCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             cCCccCHHHHHHHHHhcCCCEEEEcCeecCCcchhhhCHHHHHHHHHHHHHHHHHHHHHhCCCeEEE
Confidence            369999999999999  99999999997631                 12368899999887 5553

>1t2a_A GDP-mannose 4,6 dehydratase; structural genomics consortium, rossman-fold, short-chain dehydrogenase/reductase, SDR, structural genomics,lyase; HET: NDP GDP; 1.84A {Homo sapiens} SCOP: c.2.1.2

Probab=94.18  E-value=0.067  Score=42.26  Aligned_cols=48  Identities=6%  Similarity=-0.035  Sum_probs=39.2

Q ss_pred             CcceEEeeCCCHHHHHHHHhc--CcEEEecCCCccch----------------hHHHHHHHHHcCC
Q psy12849         31 TNRTTVVNTINESSILIMAKK--CRVILNCVGPYTWY----------------GEAVVKACIEAKT   78 (138)
Q Consensus        31 ~~~~~~~D~~d~~~L~~~~~~--~dvVIn~~GPf~~~----------------~~~v~~Aci~~g~   78 (138)
                      ++.++.+|+.|++++.+++++  .|+||||+|+....                ...++++|.+.++
T Consensus        80 ~~~~~~~Dl~d~~~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~  145 (375)
T 1t2a_A           80 NMKLHYGDLTDSTCLVKIINEVKPTEIYNLGAQSHVKISFDLAEYTADVDGVGTLRLLDAVKTCGL  145 (375)
T ss_dssp             CEEEEECCTTCHHHHHHHHHHHCCSEEEECCSCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHTTC
T ss_pred             CceEEEccCCCHHHHHHHHHhcCCCEEEECCCcccccccccCHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            567889999999999999997  59999999975421                1368899999885

>2p5y_A UDP-glucose 4-epimerase; TTHA0591, structural genomics, PSI; HET: NAD; 1.92A {Thermus thermophilus HB8} PDB: 2p5u_A*

Probab=94.09  E-value=0.12  Score=39.63  Aligned_cols=48  Identities=8%  Similarity=0.025  Sum_probs=39.2

Q ss_pred             CcceEEeeCCCHHHHHHHHh--cCcEEEecCCCccch----------------hHHHHHHHHHcCC
Q psy12849         31 TNRTTVVNTINESSILIMAK--KCRVILNCVGPYTWY----------------GEAVVKACIEAKT   78 (138)
Q Consensus        31 ~~~~~~~D~~d~~~L~~~~~--~~dvVIn~~GPf~~~----------------~~~v~~Aci~~g~   78 (138)
                      ++.++.+|+.|++++.++++  ++|+|+|++|+....                ...++++|.+.|+
T Consensus        44 ~~~~~~~Dl~~~~~~~~~~~~~~~d~vi~~a~~~~~~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~  109 (311)
T 2p5y_A           44 GVPFFRVDLRDKEGVERAFREFRPTHVSHQAAQASVKVSVEDPVLDFEVNLLGGLNLLEACRQYGV  109 (311)
T ss_dssp             TCCEECCCTTCHHHHHHHHHHHCCSEEEECCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTTC
T ss_pred             CeEEEECCCCCHHHHHHHHHhcCCCEEEECccccCchhhhhCHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            56788999999999999998  799999999875310                1368899998886

>2pk3_A GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, short-chain dehydrogenase/reductase, rossmann fold, oxidoreductase; HET: A2R GDD; 1.82A {Aneurinibacillus thermoaerophilus}

Probab=93.88  E-value=0.1  Score=40.04  Aligned_cols=46  Identities=7%  Similarity=0.046  Sum_probs=37.1

Q ss_pred             CcceEEeeCCCHHHHHHHHhc--CcEEEecCCCccch----------------hHHHHHHHHHc
Q psy12849         31 TNRTTVVNTINESSILIMAKK--CRVILNCVGPYTWY----------------GEAVVKACIEA   76 (138)
Q Consensus        31 ~~~~~~~D~~d~~~L~~~~~~--~dvVIn~~GPf~~~----------------~~~v~~Aci~~   76 (138)
                      ++.++.+|+.|++++.+++++  .|+||||+|+....                ...++++|.+.
T Consensus        52 ~~~~~~~Dl~d~~~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~  115 (321)
T 2pk3_A           52 NVEMISLDIMDSQRVKKVISDIKPDYIFHLAAKSSVKDSWLNKKGTFSTNVFGTLHVLDAVRDS  115 (321)
T ss_dssp             TEEEEECCTTCHHHHHHHHHHHCCSEEEECCSCCCHHHHTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             eeeEEECCCCCHHHHHHHHHhcCCCEEEEcCcccchhhhhhcHHHHHHHHHHHHHHHHHHHHHh
Confidence            467889999999999999997  89999999975411                24678888765

>3upl_A Oxidoreductase; rossmann fold, NADPH binding; 1.50A {Brucella melitensis biovar abortus 230ORGANISM_TAXID} PDB: 3upy_A*

Probab=93.85  E-value=0.28  Score=41.37  Aligned_cols=67  Identities=16%  Similarity=0.043  Sum_probs=49.6

Q ss_pred             HHHHHh--cCcEEEecCCCccchhHHHHHHHHHcCCCeeeCCCChHHHHHHHHHhHHHHHhCCCEEEeCCCC
Q psy12849         45 ILIMAK--KCRVILNCVGPYTWYGEAVVKACIEAKTHHVDITGEPYFMEYMQYEYNTRAQESEVCVVSACGI  114 (138)
Q Consensus        45 L~~~~~--~~dvVIn~~GPf~~~~~~v~~Aci~~g~hYvDisge~~~~~~~~~~~~~~A~~~gv~iv~~~G~  114 (138)
                      +.++++  ..|+|+.|.|+. .+...++..|+++|.|-+-.  +.+..-..-.++-+.|+++|+.+..+.|-
T Consensus        99 ~eeLL~d~dIDaVviaTp~p-~~H~e~a~~AL~AGKHVv~~--nk~l~~~eg~eL~~~A~e~Gvvl~~~~gd  167 (446)
T 3upl_A           99 NDLILSNPLIDVIIDATGIP-EVGAETGIAAIRNGKHLVMM--NVEADVTIGPYLKAQADKQGVIYSLGAGD  167 (446)
T ss_dssp             HHHHHTCTTCCEEEECSCCH-HHHHHHHHHHHHTTCEEEEC--CHHHHHHHHHHHHHHHHHHTCCEEECTTS
T ss_pred             HHHHhcCCCCCEEEEcCCCh-HHHHHHHHHHHHcCCcEEec--CcccCHHHHHHHHHHHHHhCCeeeecCCc
Confidence            455666  589999999653 34468999999999999954  34443222347778899999999998884

>1n7h_A GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR, short-chain dehydrogenase/reductase, LYA; HET: NDP GDP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1n7g_A*

Probab=93.75  E-value=0.05  Score=43.07  Aligned_cols=48  Identities=8%  Similarity=-0.046  Sum_probs=38.5

Q ss_pred             CcceEEeeCCCHHHHHHHHhc--CcEEEecCCCccch----------------hHHHHHHHHHcCC
Q psy12849         31 TNRTTVVNTINESSILIMAKK--CRVILNCVGPYTWY----------------GEAVVKACIEAKT   78 (138)
Q Consensus        31 ~~~~~~~D~~d~~~L~~~~~~--~dvVIn~~GPf~~~----------------~~~v~~Aci~~g~   78 (138)
                      ++.++.+|+.|++++.+++++  .|+||||+|+....                ...++++|.+.++
T Consensus        84 ~~~~~~~Dl~d~~~~~~~~~~~~~d~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~l~~a~~~~~~  149 (381)
T 1n7h_A           84 LMKLHYADLTDASSLRRWIDVIKPDEVYNLAAQSHVAVSFEIPDYTADVVATGALRLLEAVRSHTI  149 (381)
T ss_dssp             CEEEEECCTTCHHHHHHHHHHHCCSEEEECCSCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHHHH
T ss_pred             ceEEEECCCCCHHHHHHHHHhcCCCEEEECCcccCccccccCHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            577889999999999999997  59999999975421                2467888888753

>1udb_A Epimerase, UDP-galactose-4-epimerase; isomerase; HET: NAD UFG; 1.65A {Escherichia coli} SCOP: c.2.1.2 PDB: 1lrj_A* 1nai_A* 1uda_A* 1nah_A* 1xel_A* 1kvq_A* 1kvs_A* 1udc_A* 2udp_A* 1a9z_A* 1kvt_A* 1kvr_A* 1lrk_A* 1lrl_A* 1kvu_A* 1a9y_A*

Probab=93.63  E-value=0.15  Score=39.40  Aligned_cols=48  Identities=10%  Similarity=0.014  Sum_probs=37.9

Q ss_pred             CcceEEeeCCCHHHHHHHHhc--CcEEEecCCCccch----------------hHHHHHHHHHcCC
Q psy12849         31 TNRTTVVNTINESSILIMAKK--CRVILNCVGPYTWY----------------GEAVVKACIEAKT   78 (138)
Q Consensus        31 ~~~~~~~D~~d~~~L~~~~~~--~dvVIn~~GPf~~~----------------~~~v~~Aci~~g~   78 (138)
                      ++.++.+|+.|++++.+++++  +|+||||+|+....                ...++++|.+.|+
T Consensus        51 ~~~~~~~Dl~~~~~~~~~~~~~~~D~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~  116 (338)
T 1udb_A           51 HPTFVEGDIRNEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANV  116 (338)
T ss_dssp             CCEEEECCTTCHHHHHHHHHHTTCSEEEECCSCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             cceEEEccCCCHHHHHHHhhccCCCEEEECCccCccccchhcHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            567899999999999999985  89999999964310                1357788888775

>3st7_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold, cupid domain, short-chain dehydrogenase/reduc NADPH; 2.45A {Staphylococcus aureus} PDB: 2zkl_A 3vhr_A

Probab=93.58  E-value=0.1  Score=41.24  Aligned_cols=48  Identities=15%  Similarity=0.115  Sum_probs=39.9

Q ss_pred             cceEEeeC-CCHHHHHHHHhcCcEEEecCCCccc------------hhHHHHHHHHHcCCC
Q psy12849         32 NRTTVVNT-INESSILIMAKKCRVILNCVGPYTW------------YGEAVVKACIEAKTH   79 (138)
Q Consensus        32 ~~~~~~D~-~d~~~L~~~~~~~dvVIn~~GPf~~------------~~~~v~~Aci~~g~h   79 (138)
                      ++.+.+|. .|++++.++++++|+||||+|+...            ....++++|.+.|+.
T Consensus        26 ~~v~~~d~~~d~~~l~~~~~~~d~Vih~a~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~   86 (369)
T 3st7_A           26 HHIFEVHRQTKEEELESALLKADFIVHLAGVNRPEHDKEFSLGNVSYLDHVLDILTRNTKK   86 (369)
T ss_dssp             CEEEECCTTCCHHHHHHHHHHCSEEEECCCSBCTTCSTTCSSSCCBHHHHHHHHHTTCSSC
T ss_pred             CEEEEECCCCCHHHHHHHhccCCEEEECCcCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            47889999 9999999999999999999987432            125699999999854

>1rkx_A CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; 1.80A {Yersinia pseudotuberculosis} SCOP: c.2.1.2 PDB: 1wvg_A*

Probab=93.50  E-value=0.16  Score=39.61  Aligned_cols=48  Identities=4%  Similarity=0.045  Sum_probs=38.1

Q ss_pred             CCcceEEeeCCCHHHHHHHHhc--CcEEEecCCCccc-h---------------hHHHHHHHHHcC
Q psy12849         30 RTNRTTVVNTINESSILIMAKK--CRVILNCVGPYTW-Y---------------GEAVVKACIEAK   77 (138)
Q Consensus        30 ~~~~~~~~D~~d~~~L~~~~~~--~dvVIn~~GPf~~-~---------------~~~v~~Aci~~g   77 (138)
                      .++.++.+|+.|++++.+++++  .|+||||+|.... .               ...++++|.+.|
T Consensus        57 ~~~~~~~~Dl~d~~~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~  122 (357)
T 1rkx_A           57 DGMQSEIGDIRDQNKLLESIREFQPEIVFHMAAQPLVRLSYSEPVETYSTNVMGTVYLLEAIRHVG  122 (357)
T ss_dssp             TTSEEEECCTTCHHHHHHHHHHHCCSEEEECCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHHC
T ss_pred             CceEEEEccccCHHHHHHHHHhcCCCEEEECCCCcccccchhCHHHHHHHHHHHHHHHHHHHHHhC
Confidence            3678899999999999999997  8999999994211 0               135789998876

>1npy_A Hypothetical shikimate 5-dehydrogenase-like protein HI0607; structural genomics, PSI, protein structure initiative; 1.75A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5

Probab=93.42  E-value=0.042  Score=43.14  Aligned_cols=72  Identities=21%  Similarity=0.226  Sum_probs=48.9

Q ss_pred             hcCcEEEecCCCccchh------HHHHHHHHHcCCCeeeCCCChHHHHHHHHHhHHHHHhCCCEEEeCCCCccchHhHHH
Q psy12849         50 KKCRVILNCVGPYTWYG------EAVVKACIEAKTHHVDITGEPYFMEYMQYEYNTRAQESEVCVVSACGIETLPIDMGV  123 (138)
Q Consensus        50 ~~~dvVIn~~GPf~~~~------~~v~~Aci~~g~hYvDisge~~~~~~~~~~~~~~A~~~gv~iv~~~G~d~~p~dl~~  123 (138)
                      .++|+||||. |....+      .++-..++..+...+|+...|.-+     .+-++|+++|..+++|.+       |+.
T Consensus       174 ~~~DivInaT-p~gm~~~~~~~~~~~~~~~l~~~~~v~DlvY~P~~T-----~ll~~A~~~G~~~i~Gl~-------MLv  240 (271)
T 1npy_A          174 QQADILVNVT-SIGMKGGKEEMDLAFPKAFIDNASVAFDVVAMPVET-----PFIRYAQARGKQTISGAA-------VIV  240 (271)
T ss_dssp             CCCSEEEECS-STTCTTSTTTTSCSSCHHHHHHCSEEEECCCSSSSC-----HHHHHHHHTTCEEECHHH-------HHH
T ss_pred             ccCCEEEECC-CCCccCccccCCCCCCHHHcCCCCEEEEeecCCCCC-----HHHHHHHHCCCEEECCHH-------HHH
Confidence            5689999999 544321      123456788899999999865433     344678999999887665       455


Q ss_pred             HHHHHHhhhhc
Q psy12849        124 LMLQDSFEGHS  134 (138)
Q Consensus       124 ~~~~~~~~~~~  134 (138)
                      +.++.+|+-=+
T Consensus       241 ~Qa~~~f~lw~  251 (271)
T 1npy_A          241 LQAVEQFELYT  251 (271)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHh
Confidence            66666655433

>3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A*

Probab=93.34  E-value=0.021  Score=45.09  Aligned_cols=66  Identities=17%  Similarity=0.145  Sum_probs=43.3

Q ss_pred             HHHHHHHHhcCcEEEecCCCccchhH---HHHHHHHHcCCCeeeCCCChHHHHHHHHHhHHHHHhCCCEEEeCCC
Q psy12849         42 ESSILIMAKKCRVILNCVGPYTWYGE---AVVKACIEAKTHHVDITGEPYFMEYMQYEYNTRAQESEVCVVSACG  113 (138)
Q Consensus        42 ~~~L~~~~~~~dvVIn~~GPf~~~~~---~v~~Aci~~g~hYvDisge~~~~~~~~~~~~~~A~~~gv~iv~~~G  113 (138)
                      .+++.+.++++|+||||. |....+.   ++-...+..+...+|+...|.-+     .+-++|+++|..+++|.+
T Consensus       166 ~~~~~~~~~~aDiVInaT-p~Gm~~~~~~~l~~~~l~~~~~V~D~vY~P~~T-----~ll~~A~~~G~~~~~Gl~  234 (277)
T 3don_A          166 LSHAESHLDEFDIIINTT-PAGMNGNTDSVISLNRLASHTLVSDIVYNPYKT-----PILIEAEQRGNPIYNGLD  234 (277)
T ss_dssp             HHHHHHTGGGCSEEEECC-C-------CCSSCCTTCCSSCEEEESCCSSSSC-----HHHHHHHHTTCCEECTHH
T ss_pred             HhhHHHHhcCCCEEEECc-cCCCCCCCcCCCCHHHcCCCCEEEEecCCCCCC-----HHHHHHHHCcCEEeCCHH
Confidence            456778889999999998 4432211   12223456788889998875433     334678999999887665

>2nu8_A Succinyl-COA ligase [ADP-forming] subunit alpha; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.2.1.8 c.23.4.1 PDB: 2nu9_A* 2nu7_A* 2nua_A* 2nu6_A* 2scu_A* 1jll_A* 1scu_A* 1jkj_A* 1cqj_A* 1cqi_A*

Probab=93.31  E-value=0.27  Score=38.69  Aligned_cols=65  Identities=14%  Similarity=0.127  Sum_probs=46.1

Q ss_pred             HHHHHHh--cCcEEEecCCCccchhHHHHHHHHHcCCCe-eeCCCChHHHHHHHHHhHHHHHhCCCEEE-eCC
Q psy12849         44 SILIMAK--KCRVILNCVGPYTWYGEAVVKACIEAKTHH-VDITGEPYFMEYMQYEYNTRAQESEVCVV-SAC  112 (138)
Q Consensus        44 ~L~~~~~--~~dvVIn~~GPf~~~~~~v~~Aci~~g~hY-vDisge~~~~~~~~~~~~~~A~~~gv~iv-~~~  112 (138)
                      ++.++.+  ..|++|-|+ |...+ ..+++.|+++|+|. |=++.-.+. ++. .++.+.|++.|+.++ |.|
T Consensus        55 sl~el~~~~~~D~viI~t-P~~~~-~~~~~ea~~~Gi~~iVi~t~G~~~-~~~-~~l~~~A~~~gv~liGPNc  123 (288)
T 2nu8_A           55 TVREAVAATGATASVIYV-PAPFC-KDSILEAIDAGIKLIITITEGIPT-LDM-LTVKVKLDEAGVRMIGPNT  123 (288)
T ss_dssp             SHHHHHHHHCCCEEEECC-CGGGH-HHHHHHHHHTTCSEEEECCCCCCH-HHH-HHHHHHHHHHTCEEECSSC
T ss_pred             CHHHHhhcCCCCEEEEec-CHHHH-HHHHHHHHHCCCCEEEEECCCCCH-HHH-HHHHHHHHHcCCEEEecCC
Confidence            3566666  899999999 54444 58999999999996 555543222 122 356678999999887 666

>1eq2_A ADP-L-glycero-D-mannoheptose 6-epimerase; N-terminal domain rossmann fold, C-terminal mixed alpha/beta domain; HET: NAP ADQ; 2.00A {Escherichia coli} SCOP: c.2.1.2

Probab=93.13  E-value=0.082  Score=40.19  Aligned_cols=49  Identities=8%  Similarity=0.059  Sum_probs=39.2

Q ss_pred             EEeeCCCHHHHHHHHhc-----CcEEEecCCCccch--------------hHHHHHHHHHcCCCeeeC
Q psy12849         35 TVVNTINESSILIMAKK-----CRVILNCVGPYTWY--------------GEAVVKACIEAKTHHVDI   83 (138)
Q Consensus        35 ~~~D~~d~~~L~~~~~~-----~dvVIn~~GPf~~~--------------~~~v~~Aci~~g~hYvDi   83 (138)
                      +..|+.|++.+.+++++     +|+||||+|+....              ...++++|.+.|+++|=+
T Consensus        47 ~~~d~~~~~~~~~~~~~~~~~~~d~vi~~a~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~v~~  114 (310)
T 1eq2_A           47 IADYMDKEDFLIQIMAGEEFGDVEAIFHEGACSSTTEWDGKYMMDNNYQYSKELLHYCLEREIPFLYA  114 (310)
T ss_dssp             CSEEEEHHHHHHHHHTTCCCSSCCEEEECCSCCCTTCCCHHHHHHHTHHHHHHHHHHHHHHTCCEEEE
T ss_pred             eccccccHHHHHHHHhccccCCCcEEEECcccccCcccCHHHHHHHHHHHHHHHHHHHHHcCCeEEEE
Confidence            67899999999999986     99999999976421              246899999988866643

>1z45_A GAL10 bifunctional protein; epimerase, mutarotase, metabolism, isomerase; HET: GAL NAD GUD; 1.85A {Saccharomyces cerevisiae} SCOP: b.30.5.4 c.2.1.2

Probab=93.02  E-value=0.2  Score=43.37  Aligned_cols=49  Identities=8%  Similarity=-0.005  Sum_probs=40.0

Q ss_pred             CCcceEEeeCCCHHHHHHHHh--cCcEEEecCCCccch----------------hHHHHHHHHHcCC
Q psy12849         30 RTNRTTVVNTINESSILIMAK--KCRVILNCVGPYTWY----------------GEAVVKACIEAKT   78 (138)
Q Consensus        30 ~~~~~~~~D~~d~~~L~~~~~--~~dvVIn~~GPf~~~----------------~~~v~~Aci~~g~   78 (138)
                      .++.++.+|+.|++++.++++  ++|+||||+|+....                ...++++|.+.|+
T Consensus        61 ~~v~~v~~Dl~d~~~l~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~Nv~gt~~ll~a~~~~~~  127 (699)
T 1z45_A           61 HHIPFYEVDLCDRKGLEKVFKEYKIDSVIHFAGLKAVGESTQIPLRYYHNNILGTVVLLELMQQYNV  127 (699)
T ss_dssp             SCCCEEECCTTCHHHHHHHHHHSCCCEEEECCSCCCHHHHHHSHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             CceEEEEcCCCCHHHHHHHHHhCCCCEEEECCcccCcCccccCHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            467889999999999999999  799999999975421                1357888988875

>1db3_A GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lyase; 2.30A {Escherichia coli} SCOP: c.2.1.2

Probab=92.98  E-value=0.14  Score=40.08  Aligned_cols=49  Identities=6%  Similarity=-0.153  Sum_probs=39.2

Q ss_pred             CCcceEEeeCCCHHHHHHHHhc--CcEEEecCCCccc----------------hhHHHHHHHHHcCC
Q psy12849         30 RTNRTTVVNTINESSILIMAKK--CRVILNCVGPYTW----------------YGEAVVKACIEAKT   78 (138)
Q Consensus        30 ~~~~~~~~D~~d~~~L~~~~~~--~dvVIn~~GPf~~----------------~~~~v~~Aci~~g~   78 (138)
                      .++.++.+|+.|++++.+++++  .|+||||+|+...                -...++++|.+.++
T Consensus        55 ~~~~~~~~Dl~d~~~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~  121 (372)
T 1db3_A           55 PKFHLHYGDLSDTSNLTRILREVQPDEVYNLGAMSHVAVSFESPEYTADVDAMGTLRLLEAIRFLGL  121 (372)
T ss_dssp             CCEEECCCCSSCHHHHHHHHHHHCCSEEEECCCCCTTTTTTSCHHHHHHHHTHHHHHHHHHHHHTTC
T ss_pred             CceEEEECCCCCHHHHHHHHHhcCCCEEEECCcccCccccccCHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            3577889999999999999997  5999999997431                12357899999885

>3e9m_A Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, PSI-II, dimeric dihydodiol dehydrogenase, structural genomics; 2.70A {Enterococcus faecalis}

Probab=92.89  E-value=0.89  Score=35.72  Aligned_cols=74  Identities=20%  Similarity=0.025  Sum_probs=52.6

Q ss_pred             HHHHHh--cCcEEEecCCCccchhHHHHHHHHHcCCCeee---CCCChHHHHHHHHHhHHHHHhCCCEEEeCCCCccchH
Q psy12849         45 ILIMAK--KCRVILNCVGPYTWYGEAVVKACIEAKTHHVD---ITGEPYFMEYMQYEYNTRAQESEVCVVSACGIETLPI  119 (138)
Q Consensus        45 L~~~~~--~~dvVIn~~GPf~~~~~~v~~Aci~~g~hYvD---isge~~~~~~~~~~~~~~A~~~gv~iv~~~G~d~~p~  119 (138)
                      +.+++.  +.|+|+-|+ |-..+ ..++..|+++|.|.+=   ++-...-.+    ++-+.|+++|+.+..+.-+-..|.
T Consensus        59 ~~~ll~~~~~D~V~i~t-p~~~h-~~~~~~al~~gk~vl~EKP~~~~~~e~~----~l~~~a~~~g~~~~v~~~~r~~p~  132 (330)
T 3e9m_A           59 YEELCKDETIDIIYIPT-YNQGH-YSAAKLALSQGKPVLLEKPFTLNAAEAE----ELFAIAQEQGVFLMEAQKSVFLPI  132 (330)
T ss_dssp             HHHHHHCTTCSEEEECC-CGGGH-HHHHHHHHHTTCCEEECSSCCSSHHHHH----HHHHHHHHTTCCEEECCSGGGCHH
T ss_pred             HHHHhcCCCCCEEEEcC-CCHHH-HHHHHHHHHCCCeEEEeCCCCCCHHHHH----HHHHHHHHcCCeEEEEEhhhhCHH
Confidence            556666  789999999 54555 4788999999999873   344433333    444778999999988877666665


Q ss_pred             hHHHH
Q psy12849        120 DMGVL  124 (138)
Q Consensus       120 dl~~~  124 (138)
                      -..+.
T Consensus       133 ~~~~k  137 (330)
T 3e9m_A          133 TQKVK  137 (330)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            54444

>3u9l_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.10A {Sinorhizobium meliloti}

Probab=92.89  E-value=0.19  Score=39.72  Aligned_cols=31  Identities=16%  Similarity=0.185  Sum_probs=28.6

Q ss_pred             CCcceEEeeCCCHHHHHHHHh-------cCcEEEecCC
Q psy12849         30 RTNRTTVVNTINESSILIMAK-------KCRVILNCVG   60 (138)
Q Consensus        30 ~~~~~~~~D~~d~~~L~~~~~-------~~dvVIn~~G   60 (138)
                      .++.++.+|++|++++.++++       +.|++||++|
T Consensus        59 ~~~~~~~~Dvtd~~~v~~~~~~~~~~~g~iD~lVnnAG   96 (324)
T 3u9l_A           59 VDLRTLELDVQSQVSVDRAIDQIIGEDGRIDVLIHNAG   96 (324)
T ss_dssp             CCEEEEECCTTCHHHHHHHHHHHHHHHSCCSEEEECCC
T ss_pred             CcEEEEEeecCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence            468899999999999999998       7899999999

>3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str}

Probab=92.85  E-value=0.21  Score=37.70  Aligned_cols=32  Identities=16%  Similarity=0.180  Sum_probs=28.4

Q ss_pred             CCcceEEeeCCCHHHHHHHHh-------cCcEEEecCCC
Q psy12849         30 RTNRTTVVNTINESSILIMAK-------KCRVILNCVGP   61 (138)
Q Consensus        30 ~~~~~~~~D~~d~~~L~~~~~-------~~dvVIn~~GP   61 (138)
                      .++.++++|+.|++++.++++       +.|++||++|.
T Consensus        55 ~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~id~lv~nAg~   93 (257)
T 3imf_A           55 GQILTVQMDVRNTDDIQKMIEQIDEKFGRIDILINNAAG   93 (257)
T ss_dssp             TCEEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred             CcEEEEEccCCCHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence            468889999999999999988       57999999993

>3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A*

Probab=92.83  E-value=0.19  Score=39.56  Aligned_cols=67  Identities=16%  Similarity=0.127  Sum_probs=46.2

Q ss_pred             cCcEEEecCCCcc-----chhHHHHHHHHHcCCCeeeCCCChHHHHHHHHHhHHHHHhCCCEEEeCCCCccchHhHHHHH
Q psy12849         51 KCRVILNCVGPYT-----WYGEAVVKACIEAKTHHVDITGEPYFMEYMQYEYNTRAQESEVCVVSACGIETLPIDMGVLM  125 (138)
Q Consensus        51 ~~dvVIn~~GPf~-----~~~~~v~~Aci~~g~hYvDisge~~~~~~~~~~~~~~A~~~gv~iv~~~G~d~~p~dl~~~~  125 (138)
                      ++|+||||. |..     ......+...+..+.-.+|+...| -+     .+-++|+++|..+++|.+       |+.+.
T Consensus       172 ~~DiVInaT-p~Gm~~~~~l~~~~l~~~l~~~~~v~D~vY~P-~T-----~ll~~A~~~G~~~~~Gl~-------MLv~Q  237 (269)
T 3phh_A          172 AFDLIINAT-SASLHNELPLNKEVLKGYFKEGKLAYDLAYGF-LT-----PFLSLAKELKTPFQDGKD-------MLIYQ  237 (269)
T ss_dssp             CCSEEEECC-TTCCCCSCSSCHHHHHHHHHHCSEEEESCCSS-CC-----HHHHHHHHTTCCEECSHH-------HHHHH
T ss_pred             cCCEEEEcc-cCCCCCCCCCChHHHHhhCCCCCEEEEeCCCC-ch-----HHHHHHHHCcCEEECCHH-------HHHHH
Confidence            799999998 433     123445555788899999999886 43     344678999998887665       45555


Q ss_pred             HHHHhh
Q psy12849        126 LQDSFE  131 (138)
Q Consensus       126 ~~~~~~  131 (138)
                      ++.+|+
T Consensus       238 a~~~f~  243 (269)
T 3phh_A          238 AALSFE  243 (269)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            554444

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}

Probab=92.66  E-value=0.051  Score=40.22  Aligned_cols=47  Identities=9%  Similarity=0.003  Sum_probs=35.4

Q ss_pred             CCc-ceEEeeCCCHHHHHHHHhcCcEEEecCCCccch------------hHHHHHHHHHcCC
Q psy12849         30 RTN-RTTVVNTINESSILIMAKKCRVILNCVGPYTWY------------GEAVVKACIEAKT   78 (138)
Q Consensus        30 ~~~-~~~~~D~~d~~~L~~~~~~~dvVIn~~GPf~~~------------~~~v~~Aci~~g~   78 (138)
                      .++ +++++|+.  +++.+.++++|+|||++|+....            ...++++|.+.|+
T Consensus        64 ~~~~~~~~~Dl~--~~~~~~~~~~D~vi~~ag~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~  123 (236)
T 3e8x_A           64 RGASDIVVANLE--EDFSHAFASIDAVVFAAGSGPHTGADKTILIDLWGAIKTIQEAEKRGI  123 (236)
T ss_dssp             TTCSEEEECCTT--SCCGGGGTTCSEEEECCCCCTTSCHHHHHHTTTHHHHHHHHHHHHHTC
T ss_pred             CCCceEEEcccH--HHHHHHHcCCCEEEECCCCCCCCCccccchhhHHHHHHHHHHHHHcCC
Confidence            367 88999998  77889999999999999986421            2356666666653

>3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima}

Probab=92.64  E-value=0.057  Score=41.94  Aligned_cols=63  Identities=11%  Similarity=0.024  Sum_probs=42.3

Q ss_pred             HHHHHHHhcCcEEEecCCCccch--hHHHHHHHHHcCCCeeeCCCChHHHHHHHHHhHHHHHhCCCE-EEeCCC
Q psy12849         43 SSILIMAKKCRVILNCVGPYTWY--GEAVVKACIEAKTHHVDITGEPYFMEYMQYEYNTRAQESEVC-VVSACG  113 (138)
Q Consensus        43 ~~L~~~~~~~dvVIn~~GPf~~~--~~~v~~Aci~~g~hYvDisge~~~~~~~~~~~~~~A~~~gv~-iv~~~G  113 (138)
                      +++.+.++++|+||||+ |-...  ..++-...+..+...+|+...  -     ..+-++|+++|+. +++|.+
T Consensus       158 ~~~~~~~~~aDiVInat-p~gm~p~~~~i~~~~l~~~~~V~Divy~--~-----T~ll~~A~~~G~~~~~~Gl~  223 (253)
T 3u62_A          158 DQLDEVVKKAKSLFNTT-SVGMKGEELPVSDDSLKNLSLVYDVIYF--D-----TPLVVKARKLGVKHIIKGNL  223 (253)
T ss_dssp             GGHHHHHHTCSEEEECS-STTTTSCCCSCCHHHHTTCSEEEECSSS--C-----CHHHHHHHHHTCSEEECTHH
T ss_pred             HHHHhhhcCCCEEEECC-CCCCCCCCCCCCHHHhCcCCEEEEeeCC--C-----cHHHHHHHHCCCcEEECCHH
Confidence            34667889999999999 32211  123334567788999999876  1     1333567788988 888765

>1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A {Klebsiella pneumoniae} SCOP: c.2.1.2

Probab=92.55  E-value=0.24  Score=37.18  Aligned_cols=32  Identities=16%  Similarity=0.223  Sum_probs=28.4

Q ss_pred             CCcceEEeeCCCHHHHHHHHh-------cCcEEEecCCC
Q psy12849         30 RTNRTTVVNTINESSILIMAK-------KCRVILNCVGP   61 (138)
Q Consensus        30 ~~~~~~~~D~~d~~~L~~~~~-------~~dvVIn~~GP   61 (138)
                      .++.++.+|+.|++++.++++       +.|++||++|.
T Consensus        51 ~~~~~~~~D~~~~~~v~~~~~~~~~~~g~id~lv~nAg~   89 (256)
T 1geg_A           51 GHAVAVKVDVSDRDQVFAAVEQARKTLGGFDVIVNNAGV   89 (256)
T ss_dssp             CCEEEEECCTTSHHHHHHHHHHHHHHTTCCCEEEECCCC
T ss_pred             CcEEEEEecCCCHHHHHHHHHHHHHHhCCCCEEEECCCC
Confidence            357889999999999999988       78999999984

>2yv1_A Succinyl-COA ligase [ADP-forming] subunit alpha; COA-binding domain, structural genomics, NPPSFA; 1.70A {Methanocaldococcus jannaschii}

Probab=92.53  E-value=0.3  Score=38.65  Aligned_cols=65  Identities=17%  Similarity=0.127  Sum_probs=45.2

Q ss_pred             HHHHHHh--cCcEEEecCCCccchhHHHHHHHHHcCCC-eeeCCCChHHHHHHHHHhHHHHHhCCCEEE-eCC
Q psy12849         44 SILIMAK--KCRVILNCVGPYTWYGEAVVKACIEAKTH-HVDITGEPYFMEYMQYEYNTRAQESEVCVV-SAC  112 (138)
Q Consensus        44 ~L~~~~~--~~dvVIn~~GPf~~~~~~v~~Aci~~g~h-YvDisge~~~~~~~~~~~~~~A~~~gv~iv-~~~  112 (138)
                      ++.++.+  ..|++|-++.| ... ..+++.|++.|++ -|=++.-.+-. + ..++.+.|++.|+.++ |.|
T Consensus        61 sl~el~~~~~~Dv~ii~vp~-~~~-~~~v~ea~~~Gi~~vVi~t~G~~~~-~-~~~l~~~A~~~gi~viGPNc  129 (294)
T 2yv1_A           61 TVKEAVKETDANASVIFVPA-PFA-KDAVFEAIDAGIELIVVITEHIPVH-D-TMEFVNYAEDVGVKIIGPNT  129 (294)
T ss_dssp             SHHHHHHHHCCCEEEECCCH-HHH-HHHHHHHHHTTCSEEEECCSCCCHH-H-HHHHHHHHHHHTCEEECSSC
T ss_pred             CHHHHhhcCCCCEEEEccCH-HHH-HHHHHHHHHCCCCEEEEECCCCCHH-H-HHHHHHHHHHcCCEEEcCCC
Confidence            4666667  89999999954 333 5899999999999 45444322221 1 2466688999999887 444

>3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum}

Probab=92.51  E-value=0.073  Score=42.19  Aligned_cols=68  Identities=31%  Similarity=0.277  Sum_probs=45.6

Q ss_pred             cCcEEEecCCCccchh----HHHHHHHHHcCCCeeeCCCChHHHHHHHHHhHHHHHhCCCEEEeCCCCccchHhHHHHHH
Q psy12849         51 KCRVILNCVGPYTWYG----EAVVKACIEAKTHHVDITGEPYFMEYMQYEYNTRAQESEVCVVSACGIETLPIDMGVLML  126 (138)
Q Consensus        51 ~~dvVIn~~GPf~~~~----~~v~~Aci~~g~hYvDisge~~~~~~~~~~~~~~A~~~gv~iv~~~G~d~~p~dl~~~~~  126 (138)
                      ++|+||||. |..-.+    .++-...+..+...+|+...|.-+     .|-.+|+++|..+++|.+       |+.+.+
T Consensus       178 ~~DivInaT-p~Gm~~~~~~~pi~~~~l~~~~~v~DlvY~P~~T-----~ll~~A~~~G~~~~~Gl~-------MLv~Qa  244 (282)
T 3fbt_A          178 KGDVIINCT-PKGMYPKEGESPVDKEVVAKFSSAVDLIYNPVET-----LFLKYARESGVKAVNGLY-------MLVSQA  244 (282)
T ss_dssp             CCSEEEECS-STTSTTSTTCCSSCHHHHTTCSEEEESCCSSSSC-----HHHHHHHHTTCEEECSHH-------HHHHHH
T ss_pred             cCCEEEECC-ccCccCCCccCCCCHHHcCCCCEEEEEeeCCCCC-----HHHHHHHHCcCeEeCcHH-------HHHHHH
Confidence            799999999 543221    245566788888889998875433     333568899999887665       444545


Q ss_pred             HHHhh
Q psy12849        127 QDSFE  131 (138)
Q Consensus       127 ~~~~~  131 (138)
                      +.+|+
T Consensus       245 ~~~f~  249 (282)
T 3fbt_A          245 AASEE  249 (282)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            44444

>4hkt_A Inositol 2-dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, oxidoreductase; HET: MSE; 2.00A {Sinorhizobium meliloti}

Probab=92.47  E-value=0.84  Score=35.69  Aligned_cols=74  Identities=11%  Similarity=0.051  Sum_probs=51.3

Q ss_pred             HHHHHh--cCcEEEecCCCccchhHHHHHHHHHcCCCeee---CCCChHHHHHHHHHhHHHHHhCCCEEEeCCCCccchH
Q psy12849         45 ILIMAK--KCRVILNCVGPYTWYGEAVVKACIEAKTHHVD---ITGEPYFMEYMQYEYNTRAQESEVCVVSACGIETLPI  119 (138)
Q Consensus        45 L~~~~~--~~dvVIn~~GPf~~~~~~v~~Aci~~g~hYvD---isge~~~~~~~~~~~~~~A~~~gv~iv~~~G~d~~p~  119 (138)
                      +.++++  +.|+|+-|+ |-..+ .+++..|+++|.|.+=   ++-...-.+    ++.+.|+++|+.+..+.-+-..|.
T Consensus        55 ~~~~l~~~~~D~V~i~t-p~~~h-~~~~~~al~~gk~v~~EKP~~~~~~~~~----~l~~~a~~~g~~~~v~~~~r~~p~  128 (331)
T 4hkt_A           55 IDAIEAAADIDAVVICT-PTDTH-ADLIERFARAGKAIFCEKPIDLDAERVR----ACLKVVSDTKAKLMVGFNRRFDPH  128 (331)
T ss_dssp             HHHHHHCTTCCEEEECS-CGGGH-HHHHHHHHHTTCEEEECSCSCSSHHHHH----HHHHHHHHTTCCEEECCGGGGCHH
T ss_pred             HHHHhcCCCCCEEEEeC-CchhH-HHHHHHHHHcCCcEEEecCCCCCHHHHH----HHHHHHHHcCCeEEEcccccCCHH
Confidence            455666  789999999 54555 4789999999999763   344433333    445788999999987766555665


Q ss_pred             hHHHH
Q psy12849        120 DMGVL  124 (138)
Q Consensus       120 dl~~~  124 (138)
                      -..+.
T Consensus       129 ~~~~~  133 (331)
T 4hkt_A          129 FMAVR  133 (331)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            44443

>2rh8_A Anthocyanidin reductase; flavonoids, rossmann fold, short chain dehydrogenase/reductase, oxidoreductase; 2.22A {Vitis vinifera} PDB: 3hfs_A

Probab=92.46  E-value=0.042  Score=42.62  Aligned_cols=48  Identities=21%  Similarity=0.273  Sum_probs=38.6

Q ss_pred             CCcceEEeeCCCHHHHHHHHhcCcEEEecCCCccch---------------hHHHHHHHHHcC
Q psy12849         30 RTNRTTVVNTINESSILIMAKKCRVILNCVGPYTWY---------------GEAVVKACIEAK   77 (138)
Q Consensus        30 ~~~~~~~~D~~d~~~L~~~~~~~dvVIn~~GPf~~~---------------~~~v~~Aci~~g   77 (138)
                      .++++++.|+.|++++.++++++|+|||++||....               ...++++|.+.|
T Consensus        59 ~~~~~~~~Dl~d~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~nv~gt~~ll~aa~~~~  121 (338)
T 2rh8_A           59 GDLKIFRADLTDELSFEAPIAGCDFVFHVATPVHFASEDPENDMIKPAIQGVVNVMKACTRAK  121 (338)
T ss_dssp             SCEEEEECCTTTSSSSHHHHTTCSEEEEESSCCCC---------CHHHHHHHHHHHHHHHHCT
T ss_pred             CcEEEEecCCCChHHHHHHHcCCCEEEEeCCccCCCCCCcHHHHHHHHHHHHHHHHHHHHHcC
Confidence            357788999999999999999999999999975211               135788898885

>3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=92.42  E-value=0.26  Score=37.38  Aligned_cols=33  Identities=9%  Similarity=0.051  Sum_probs=29.5

Q ss_pred             CCcceEEeeCCCHHHHHHHHh-------cCcEEEecCCCc
Q psy12849         30 RTNRTTVVNTINESSILIMAK-------KCRVILNCVGPY   62 (138)
Q Consensus        30 ~~~~~~~~D~~d~~~L~~~~~-------~~dvVIn~~GPf   62 (138)
                      .++.++++|+.|++++.++++       +.|++||++|.+
T Consensus        60 ~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~id~lvnnAg~~   99 (262)
T 3pk0_A           60 GKVIGVQTDVSDRAQCDALAGRAVEEFGGIDVVCANAGVF   99 (262)
T ss_dssp             SCEEEEECCTTSHHHHHHHHHHHHHHHSCCSEEEECCCCC
T ss_pred             CcEEEEEcCCCCHHHHHHHHHHHHHHhCCCCEEEECCCCC
Confidence            578899999999999999887       789999999954

>4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A

Probab=92.39  E-value=0.26  Score=37.14  Aligned_cols=33  Identities=9%  Similarity=0.124  Sum_probs=29.1

Q ss_pred             CCcceEEeeCCCHHHHHHHHh-------cCcEEEecCCCc
Q psy12849         30 RTNRTTVVNTINESSILIMAK-------KCRVILNCVGPY   62 (138)
Q Consensus        30 ~~~~~~~~D~~d~~~L~~~~~-------~~dvVIn~~GPf   62 (138)
                      .+..++++|+.|++++.++++       +.|++||++|..
T Consensus        54 ~~~~~~~~D~~~~~~v~~~~~~~~~~~g~id~lv~~Ag~~   93 (259)
T 4e6p_A           54 PAAYAVQMDVTRQDSIDAAIAATVEHAGGLDILVNNAALF   93 (259)
T ss_dssp             TTEEEEECCTTCHHHHHHHHHHHHHHSSSCCEEEECCCCC
T ss_pred             CCceEEEeeCCCHHHHHHHHHHHHHHcCCCCEEEECCCcC
Confidence            357889999999999999998       789999999953

>1yo6_A Putative carbonyl reductase sniffer; tyrosine-dependent oxidoreductase (SDR family), structural genomics, PSI; 2.60A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=92.38  E-value=0.13  Score=37.79  Aligned_cols=34  Identities=9%  Similarity=0.100  Sum_probs=29.8

Q ss_pred             CCcceEEeeCCCHHHHHHHHh---------cCcEEEecCCCcc
Q psy12849         30 RTNRTTVVNTINESSILIMAK---------KCRVILNCVGPYT   63 (138)
Q Consensus        30 ~~~~~~~~D~~d~~~L~~~~~---------~~dvVIn~~GPf~   63 (138)
                      .++.++.+|+.|++++.++++         +.|+|||++|...
T Consensus        51 ~~~~~~~~D~~~~~~~~~~~~~~~~~~g~~~id~li~~Ag~~~   93 (250)
T 1yo6_A           51 SRVHVLPLTVTCDKSLDTFVSKVGEIVGSDGLSLLINNAGVLL   93 (250)
T ss_dssp             TTEEEEECCTTCHHHHHHHHHHHHHHHGGGCCCEEEECCCCCC
T ss_pred             CceEEEEeecCCHHHHHHHHHHHHHhcCCCCCcEEEECCcccC
Confidence            467899999999999999988         7999999998543

>3i4f_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, 3-oxoacyl-reductase, PSI-2; 2.39A {Bacillus thuringiensis serovar kurstakorganism_taxid} SCOP: c.2.1.0

Probab=92.35  E-value=0.2  Score=37.65  Aligned_cols=32  Identities=13%  Similarity=0.270  Sum_probs=28.8

Q ss_pred             CCcceEEeeCCCHHHHHHHHh-------cCcEEEecCCC
Q psy12849         30 RTNRTTVVNTINESSILIMAK-------KCRVILNCVGP   61 (138)
Q Consensus        30 ~~~~~~~~D~~d~~~L~~~~~-------~~dvVIn~~GP   61 (138)
                      .++.++++|+.|++++.++++       +.|++||++|+
T Consensus        57 ~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~id~lv~~Ag~   95 (264)
T 3i4f_A           57 ERLQFVQADVTKKEDLHKIVEEAMSHFGKIDFLINNAGP   95 (264)
T ss_dssp             GGEEEEECCTTSHHHHHHHHHHHHHHHSCCCEEECCCCC
T ss_pred             CceEEEEecCCCHHHHHHHHHHHHHHhCCCCEEEECCcc
Confidence            467899999999999999988       68999999994

>2p4h_X Vestitone reductase; NADPH-dependent reductase, isoflavonoid, plant protein; 1.40A {Medicago sativa}

Probab=92.30  E-value=0.05  Score=41.73  Aligned_cols=48  Identities=17%  Similarity=0.286  Sum_probs=36.9

Q ss_pred             CcceEEeeCCCHHHHHHHHhcCcEEEecCCCccch---------------hHHHHHHHHHc-CC
Q psy12849         31 TNRTTVVNTINESSILIMAKKCRVILNCVGPYTWY---------------GEAVVKACIEA-KT   78 (138)
Q Consensus        31 ~~~~~~~D~~d~~~L~~~~~~~dvVIn~~GPf~~~---------------~~~v~~Aci~~-g~   78 (138)
                      ++.++.+|+.|++++.++++++|+|||+++|....               ...++++|.+. |+
T Consensus        54 ~~~~~~~Dl~d~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~nv~gt~~l~~aa~~~~~~  117 (322)
T 2p4h_X           54 KLHFFNADLSNPDSFAAAIEGCVGIFHTASPIDFAVSEPEEIVTKRTVDGALGILKACVNSKTV  117 (322)
T ss_dssp             HEEECCCCTTCGGGGHHHHTTCSEEEECCCCC--------CHHHHHHHHHHHHHHHHHTTCSSC
T ss_pred             ceEEEecCCCCHHHHHHHHcCCCEEEEcCCcccCCCCChHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence            35678899999999999999999999999875211               13567888877 54

>3ak4_A NADH-dependent quinuclidinone reductase; SDR, (R)-3-quinuclidinol, chiral alcohol, oxidoreductase; HET: NAD; 2.00A {Agrobacterium tumefaciens}

Probab=92.24  E-value=0.29  Score=36.84  Aligned_cols=32  Identities=9%  Similarity=0.049  Sum_probs=28.5

Q ss_pred             CcceEEeeCCCHHHHHHHHh-------cCcEEEecCCCc
Q psy12849         31 TNRTTVVNTINESSILIMAK-------KCRVILNCVGPY   62 (138)
Q Consensus        31 ~~~~~~~D~~d~~~L~~~~~-------~~dvVIn~~GPf   62 (138)
                      ++.++++|+.|++++.++++       +.|+|||++|..
T Consensus        59 ~~~~~~~D~~d~~~v~~~~~~~~~~~g~iD~lv~~Ag~~   97 (263)
T 3ak4_A           59 GGFAVEVDVTKRASVDAAMQKAIDALGGFDLLCANAGVS   97 (263)
T ss_dssp             CCEEEECCTTCHHHHHHHHHHHHHHHTCCCEEEECCCCC
T ss_pred             CCeEEEEeCCCHHHHHHHHHHHHHHcCCCCEEEECCCcC
Confidence            57789999999999999988       789999999943

>1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A

Probab=92.19  E-value=0.056  Score=41.64  Aligned_cols=48  Identities=8%  Similarity=0.036  Sum_probs=38.0

Q ss_pred             CCcceE-EeeCCCHHHHHHHHhcCcEEEecCCCccc-------------hhHHHHHHHHH-cC
Q psy12849         30 RTNRTT-VVNTINESSILIMAKKCRVILNCVGPYTW-------------YGEAVVKACIE-AK   77 (138)
Q Consensus        30 ~~~~~~-~~D~~d~~~L~~~~~~~dvVIn~~GPf~~-------------~~~~v~~Aci~-~g   77 (138)
                      .+++++ .+|+.|++++.++++++|+||||+|+...             -...++++|.+ .|
T Consensus        61 ~~~~~~~~~D~~d~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~n~~g~~~ll~~~~~~~~  123 (342)
T 1y1p_A           61 GRFETAVVEDMLKQGAYDEVIKGAAGVAHIASVVSFSNKYDEVVTPAIGGTLNALRAAAATPS  123 (342)
T ss_dssp             TTEEEEECSCTTSTTTTTTTTTTCSEEEECCCCCSCCSCHHHHHHHHHHHHHHHHHHHHTCTT
T ss_pred             CceEEEEecCCcChHHHHHHHcCCCEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            357777 79999999999999999999999998641             12467888884 44

>2p2s_A Putative oxidoreductase; YP_050235.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.25A {Pectobacterium atrosepticum SCRI1043}

Probab=92.13  E-value=0.87  Score=35.67  Aligned_cols=69  Identities=7%  Similarity=-0.114  Sum_probs=47.4

Q ss_pred             HHHHHh--cCcEEEecCCCccchhHHHHHHHHHcCCC-eee--CCCChHHHHHHHHHhHHHHHhCCCEEEeCCCCccchH
Q psy12849         45 ILIMAK--KCRVILNCVGPYTWYGEAVVKACIEAKTH-HVD--ITGEPYFMEYMQYEYNTRAQESEVCVVSACGIETLPI  119 (138)
Q Consensus        45 L~~~~~--~~dvVIn~~GPf~~~~~~v~~Aci~~g~h-YvD--isge~~~~~~~~~~~~~~A~~~gv~iv~~~G~d~~p~  119 (138)
                      +.++++  +.|+|+-|+ |-..+ .+++..|+++|.| +++  ++-...-.+    ++-+.|+++|+.+..+.-+-..|.
T Consensus        58 ~~~ll~~~~~D~V~i~t-p~~~h-~~~~~~al~aGkhVl~EKP~a~~~~e~~----~l~~~a~~~g~~~~v~~~~R~~p~  131 (336)
T 2p2s_A           58 AEQLITDASIDLIACAV-IPCDR-AELALRTLDAGKDFFTAKPPLTTLEQLD----AVQRRVAETGRKFAVYFNERINVD  131 (336)
T ss_dssp             HHHHHTCTTCCEEEECS-CGGGH-HHHHHHHHHTTCEEEECSSCCSCHHHHH----HHHHHHHHHCCCEEECCTTTTTCH
T ss_pred             HHHHhhCCCCCEEEEeC-ChhhH-HHHHHHHHHCCCcEEEeCCCCCCHHHHH----HHHHHHHHcCCEEEEeeccccCcH
Confidence            566776  589999999 55555 4788999999998 455  333433333    444678889998886655444553

>3e82_A Putative oxidoreductase; NAD, GFO/IDH/MOCA family, PSI-2, NYSGXRC, 11136F, structural genomics, protein structure initiative; 2.04A {Klebsiella pneumoniae subsp}

Probab=92.12  E-value=1.4  Score=35.20  Aligned_cols=74  Identities=12%  Similarity=0.016  Sum_probs=50.7

Q ss_pred             HHHHHh--cCcEEEecCCCccchhHHHHHHHHHcCCCeee---CCCChHHHHHHHHHhHHHHHhCCCEEEeCCCCccchH
Q psy12849         45 ILIMAK--KCRVILNCVGPYTWYGEAVVKACIEAKTHHVD---ITGEPYFMEYMQYEYNTRAQESEVCVVSACGIETLPI  119 (138)
Q Consensus        45 L~~~~~--~~dvVIn~~GPf~~~~~~v~~Aci~~g~hYvD---isge~~~~~~~~~~~~~~A~~~gv~iv~~~G~d~~p~  119 (138)
                      +.++++  +.|+|+-|. |-..+ .+++..|+++|.|.+-   ++-...-.+    ++-+.|+++|+.+..+.-+-..|.
T Consensus        59 ~~~ll~~~~~D~V~i~t-p~~~H-~~~~~~al~aGk~Vl~EKPla~~~~e~~----~l~~~a~~~g~~~~v~~~~r~~p~  132 (364)
T 3e82_A           59 PEAAVQHPDVDLVVIAS-PNATH-APLARLALNAGKHVVVDKPFTLDMQEAR----ELIALAEEKQRLLSVFHNRRWDSD  132 (364)
T ss_dssp             HHHHHTCTTCSEEEECS-CGGGH-HHHHHHHHHTTCEEEECSCSCSSHHHHH----HHHHHHHHTTCCEEECCCCTTCHH
T ss_pred             HHHHhcCCCCCEEEEeC-ChHHH-HHHHHHHHHCCCcEEEeCCCcCCHHHHH----HHHHHHHHhCCeEEEEeecccCHH
Confidence            566776  689999999 55555 4788999999999875   223322233    445778999999887665445565


Q ss_pred             hHHHH
Q psy12849        120 DMGVL  124 (138)
Q Consensus       120 dl~~~  124 (138)
                      -..+.
T Consensus       133 ~~~~~  137 (364)
T 3e82_A          133 YLGIR  137 (364)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            44443

>3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI II), NYSGXRC, MYO-inosi dehydrogenase, oxidoreductase, tetramer; 2.30A {Corynebacterium glutamicum}

Probab=92.11  E-value=0.73  Score=36.26  Aligned_cols=74  Identities=8%  Similarity=-0.053  Sum_probs=52.2

Q ss_pred             HHHHHh--cCcEEEecCCCccchhHHHHHHHHHcCCCeee---CCCChHHHHHHHHHhHHHHHhCCCEEEeCCCCccchH
Q psy12849         45 ILIMAK--KCRVILNCVGPYTWYGEAVVKACIEAKTHHVD---ITGEPYFMEYMQYEYNTRAQESEVCVVSACGIETLPI  119 (138)
Q Consensus        45 L~~~~~--~~dvVIn~~GPf~~~~~~v~~Aci~~g~hYvD---isge~~~~~~~~~~~~~~A~~~gv~iv~~~G~d~~p~  119 (138)
                      +.++++  +.|+|+-|+ |-..+ .+++..|+++|.|.+=   ++-...-.+    ++.+.|+++|+.+..+.-+-..|.
T Consensus        57 ~~~~l~~~~~D~V~i~t-p~~~h-~~~~~~al~~gk~v~~EKP~~~~~~~~~----~l~~~a~~~g~~~~v~~~~r~~p~  130 (344)
T 3euw_A           57 PDEVFARDDIDGIVIGS-PTSTH-VDLITRAVERGIPALCEKPIDLDIEMVR----ACKEKIGDGASKVMLGFNRRFDPS  130 (344)
T ss_dssp             HHHHTTCSCCCEEEECS-CGGGH-HHHHHHHHHTTCCEEECSCSCSCHHHHH----HHHHHHGGGGGGEEECCGGGGCHH
T ss_pred             HHHHhcCCCCCEEEEeC-Cchhh-HHHHHHHHHcCCcEEEECCCCCCHHHHH----HHHHHHHhcCCeEEecchhhcCHH
Confidence            556677  789999999 54555 4788999999999874   344433333    444778999998888776656665


Q ss_pred             hHHHH
Q psy12849        120 DMGVL  124 (138)
Q Consensus       120 dl~~~  124 (138)
                      -..+.
T Consensus       131 ~~~~k  135 (344)
T 3euw_A          131 FAAIN  135 (344)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            55444

>3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase, short chain dehydrogenase/reductase, oxidoreductase; HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB: 3ai2_A* 3ai1_A*

Probab=92.10  E-value=0.16  Score=38.38  Aligned_cols=33  Identities=9%  Similarity=0.119  Sum_probs=28.9

Q ss_pred             CCcceEEeeCCCHHHHHHHHh-------cCcEEEecCCCc
Q psy12849         30 RTNRTTVVNTINESSILIMAK-------KCRVILNCVGPY   62 (138)
Q Consensus        30 ~~~~~~~~D~~d~~~L~~~~~-------~~dvVIn~~GPf   62 (138)
                      .++.++.+|+.|++++.++++       +.|++||++|..
T Consensus        57 ~~~~~~~~D~~~~~~~~~~~~~~~~~~g~id~lv~~Ag~~   96 (263)
T 3ai3_A           57 VRVLEVAVDVATPEGVDAVVESVRSSFGGADILVNNAGTG   96 (263)
T ss_dssp             CCEEEEECCTTSHHHHHHHHHHHHHHHSSCSEEEECCCCC
T ss_pred             CceEEEEcCCCCHHHHHHHHHHHHHHcCCCCEEEECCCCC
Confidence            357889999999999999988       789999999854

>3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp}

Probab=91.99  E-value=0.16  Score=38.57  Aligned_cols=34  Identities=6%  Similarity=0.070  Sum_probs=30.1

Q ss_pred             CCcceEEeeCCCHHHHHHHHh-------cCcEEEecCCCcc
Q psy12849         30 RTNRTTVVNTINESSILIMAK-------KCRVILNCVGPYT   63 (138)
Q Consensus        30 ~~~~~~~~D~~d~~~L~~~~~-------~~dvVIn~~GPf~   63 (138)
                      .++.++++|+.|++++.++++       +.|++||++|...
T Consensus        74 ~~~~~~~~D~~~~~~v~~~~~~~~~~~g~id~lv~nAg~~~  114 (278)
T 3sx2_A           74 SRIVARQADVRDRESLSAALQAGLDELGRLDIVVANAGIAP  114 (278)
T ss_dssp             CCEEEEECCTTCHHHHHHHHHHHHHHHCCCCEEEECCCCCC
T ss_pred             CeEEEEeCCCCCHHHHHHHHHHHHHHcCCCCEEEECCCCCC
Confidence            478899999999999999998       6899999999653

>3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum}

Probab=91.97  E-value=0.18  Score=38.77  Aligned_cols=34  Identities=6%  Similarity=-0.006  Sum_probs=30.0

Q ss_pred             CCcceEEeeCCCHHHHHHHHh-------cCcEEEecCCCcc
Q psy12849         30 RTNRTTVVNTINESSILIMAK-------KCRVILNCVGPYT   63 (138)
Q Consensus        30 ~~~~~~~~D~~d~~~L~~~~~-------~~dvVIn~~GPf~   63 (138)
                      .++.++++|+.|++++.++++       +.|++||++|...
T Consensus        81 ~~~~~~~~Dl~d~~~v~~~~~~~~~~~g~iD~lvnnAg~~~  121 (276)
T 3r1i_A           81 GKALPIRCDVTQPDQVRGMLDQMTGELGGIDIAVCNAGIVS  121 (276)
T ss_dssp             CCCEEEECCTTCHHHHHHHHHHHHHHHSCCSEEEECCCCCC
T ss_pred             CeEEEEEcCCCCHHHHHHHHHHHHHHcCCCCEEEECCCCCC
Confidence            467889999999999999998       6899999999653

>2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH, 2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural genomics, structural genomi consortium; HET: NAD GOL; 1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A* 1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A*

Probab=91.87  E-value=0.16  Score=37.98  Aligned_cols=32  Identities=16%  Similarity=0.238  Sum_probs=28.7

Q ss_pred             CcceEEeeCCCHHHHHHHHh-------cCcEEEecCCCc
Q psy12849         31 TNRTTVVNTINESSILIMAK-------KCRVILNCVGPY   62 (138)
Q Consensus        31 ~~~~~~~D~~d~~~L~~~~~-------~~dvVIn~~GPf   62 (138)
                      ++.++.+|+.|++++.++++       +.|+|||++|..
T Consensus        59 ~~~~~~~D~~~~~~v~~~~~~~~~~~g~id~li~~Ag~~   97 (265)
T 2o23_A           59 NCVFAPADVTSEKDVQTALALAKGKFGRVDVAVNCAGIA   97 (265)
T ss_dssp             TEEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEECCCCC
T ss_pred             ceEEEEcCCCCHHHHHHHHHHHHHHCCCCCEEEECCccC
Confidence            57889999999999999998       789999999853

>3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: NAD PG4; 1.55A {Mycobacterium avium} SCOP: c.2.1.0 PDB: 3uwr_A*

Probab=91.82  E-value=0.33  Score=37.04  Aligned_cols=32  Identities=16%  Similarity=0.177  Sum_probs=28.7

Q ss_pred             CCcceEEeeCCCHHHHHHHHh-------cCcEEEecCCC
Q psy12849         30 RTNRTTVVNTINESSILIMAK-------KCRVILNCVGP   61 (138)
Q Consensus        30 ~~~~~~~~D~~d~~~L~~~~~-------~~dvVIn~~GP   61 (138)
                      .++.++++|+.|++++.++++       +.|++||++|.
T Consensus        76 ~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~id~lv~nAg~  114 (286)
T 3uve_A           76 RRIVTAEVDVRDYDALKAAVDSGVEQLGRLDIIVANAGI  114 (286)
T ss_dssp             CCEEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred             CceEEEEcCCCCHHHHHHHHHHHHHHhCCCCEEEECCcc
Confidence            468899999999999999987       68999999994

>3o9z_A Lipopolysaccaride biosynthesis protein WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD AKG; 1.45A {Thermus thermophilus} PDB: 3oa0_A*

Probab=91.81  E-value=1.5  Score=34.38  Aligned_cols=69  Identities=6%  Similarity=0.030  Sum_probs=47.4

Q ss_pred             hcCcEEEecCCCccchhHHHHHHHHHcCCCeee---CCCChHHHHHHHHHhHHHHHhCCCEEEeCCCCccchHhHHHH
Q psy12849         50 KKCRVILNCVGPYTWYGEAVVKACIEAKTHHVD---ITGEPYFMEYMQYEYNTRAQESEVCVVSACGIETLPIDMGVL  124 (138)
Q Consensus        50 ~~~dvVIn~~GPf~~~~~~v~~Aci~~g~hYvD---isge~~~~~~~~~~~~~~A~~~gv~iv~~~G~d~~p~dl~~~  124 (138)
                      .+.|+|+-|. |-..+ .+++++|+++|.|-+=   ++-...-.+    ++-+.|+++|+.+..+.-+-..|.-..+.
T Consensus        71 ~~vD~V~I~t-P~~~H-~~~~~~al~aGkhVl~EKPla~~~~ea~----~l~~~a~~~g~~~~v~~~~R~~p~~~~~k  142 (312)
T 3o9z_A           71 EGVDYLSIAS-PNHLH-YPQIRMALRLGANALSEKPLVLWPEEIA----RLKELEARTGRRVYTVLQLRVHPSLLALK  142 (312)
T ss_dssp             CCCSEEEECS-CGGGH-HHHHHHHHHTTCEEEECSSSCSCHHHHH----HHHHHHHHHCCCEEECCGGGGCHHHHHHH
T ss_pred             CCCcEEEECC-Cchhh-HHHHHHHHHCCCeEEEECCCCCCHHHHH----HHHHHHHHcCCEEEEEeehhcCHHHHHHH
Confidence            5689999999 55556 4889999999999872   233333333    44467888999887776655555544443

>3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.34A {Sinorhizobium meliloti}

Probab=91.79  E-value=0.17  Score=38.07  Aligned_cols=32  Identities=19%  Similarity=0.277  Sum_probs=28.3

Q ss_pred             CcceEEeeCCCHHHHHHHHh-------cCcEEEecCCCc
Q psy12849         31 TNRTTVVNTINESSILIMAK-------KCRVILNCVGPY   62 (138)
Q Consensus        31 ~~~~~~~D~~d~~~L~~~~~-------~~dvVIn~~GPf   62 (138)
                      ++.++.+|+.|++++.++++       +.|++||++|..
T Consensus        54 ~~~~~~~Dv~~~~~v~~~~~~~~~~~g~id~lv~nAg~~   92 (257)
T 3tpc_A           54 AVRFRNADVTNEADATAALAFAKQEFGHVHGLVNCAGTA   92 (257)
T ss_dssp             -CEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEECCCCC
T ss_pred             ceEEEEccCCCHHHHHHHHHHHHHHcCCCCEEEECCCCC
Confidence            57889999999999999998       789999999965

>3afn_B Carbonyl reductase; alpha/beta/alpha, rossmann-fold, oxidoreductase; HET: NAP; 1.63A {Sphingomonas SP} PDB: 3afm_A*

Probab=91.79  E-value=0.13  Score=38.07  Aligned_cols=31  Identities=10%  Similarity=0.103  Sum_probs=28.4

Q ss_pred             CcceEEeeCCCHHHHHHHHh-------cCcEEEecCCC
Q psy12849         31 TNRTTVVNTINESSILIMAK-------KCRVILNCVGP   61 (138)
Q Consensus        31 ~~~~~~~D~~d~~~L~~~~~-------~~dvVIn~~GP   61 (138)
                      ++.++.+|+.|++++.++++       +.|+|||++|.
T Consensus        58 ~~~~~~~D~~~~~~~~~~~~~~~~~~g~id~vi~~Ag~   95 (258)
T 3afn_B           58 DAAFFAADLATSEACQQLVDEFVAKFGGIDVLINNAGG   95 (258)
T ss_dssp             EEEEEECCTTSHHHHHHHHHHHHHHHSSCSEEEECCCC
T ss_pred             ceEEEECCCCCHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence            57889999999999999998       79999999985

>1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A*

Probab=91.68  E-value=0.15  Score=37.93  Aligned_cols=33  Identities=18%  Similarity=0.135  Sum_probs=29.2

Q ss_pred             CCcceEEeeCCCHHHHHHHHh-------cCcEEEecCCCc
Q psy12849         30 RTNRTTVVNTINESSILIMAK-------KCRVILNCVGPY   62 (138)
Q Consensus        30 ~~~~~~~~D~~d~~~L~~~~~-------~~dvVIn~~GPf   62 (138)
                      .++.++.+|+.|.+++.++++       +.|+|||++|..
T Consensus        54 ~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~id~li~~Ag~~   93 (276)
T 1wma_A           54 LSPRFHQLDIDDLQSIRALRDFLRKEYGGLDVLVNNAGIA   93 (276)
T ss_dssp             CCCEEEECCTTCHHHHHHHHHHHHHHHSSEEEEEECCCCC
T ss_pred             CeeEEEECCCCCHHHHHHHHHHHHHhcCCCCEEEECCccc
Confidence            467899999999999999988       789999999854

>1tlt_A Putative oxidoreductase (virulence factor MVIM HO; structural genomics, NYSGXRC, PSI, protein structure initiative; 2.70A {Escherichia coli} SCOP: c.2.1.3 d.81.1.5

Probab=91.68  E-value=0.8  Score=35.62  Aligned_cols=65  Identities=15%  Similarity=0.153  Sum_probs=44.5

Q ss_pred             HhcCcEEEecCCCccchhHHHHHHHHHcCCCee-e--CCCChHHHHHHHHHhHHHHHhCCCEEEeCCCCccchH
Q psy12849         49 AKKCRVILNCVGPYTWYGEAVVKACIEAKTHHV-D--ITGEPYFMEYMQYEYNTRAQESEVCVVSACGIETLPI  119 (138)
Q Consensus        49 ~~~~dvVIn~~GPf~~~~~~v~~Aci~~g~hYv-D--isge~~~~~~~~~~~~~~A~~~gv~iv~~~G~d~~p~  119 (138)
                      ..+.|+|+-|+ |...+ .+++..|+++|.|.+ +  ++-...-.+    ++.+.|+++|+.+..+.-+-..|.
T Consensus        63 ~~~~D~V~i~t-p~~~h-~~~~~~al~~G~~v~~eKP~~~~~~~~~----~l~~~a~~~g~~~~~~~~~r~~p~  130 (319)
T 1tlt_A           63 AASCDAVFVHS-STASH-FDVVSTLLNAGVHVCVDKPLAENLRDAE----RLVELAARKKLTLMVGFNRRFAPL  130 (319)
T ss_dssp             HTTCSEEEECS-CTTHH-HHHHHHHHHTTCEEEEESSSCSSHHHHH----HHHHHHHHTTCCEEEECGGGGCHH
T ss_pred             hcCCCEEEEeC-CchhH-HHHHHHHHHcCCeEEEeCCCCCCHHHHH----HHHHHHHHcCCeEEEeeecccCHH
Confidence            46899999999 44444 478889999999865 3  333333332    455778899998877655544554

>3p19_A BFPVVD8, putative blue fluorescent protein; rossmann-fold, oxidoreductase; HET: NAP; 2.05A {Vibrio vulnificus}

Probab=91.67  E-value=0.19  Score=38.43  Aligned_cols=33  Identities=12%  Similarity=0.114  Sum_probs=29.1

Q ss_pred             CCcceEEeeCCCHHHHHHHHh-------cCcEEEecCCCc
Q psy12849         30 RTNRTTVVNTINESSILIMAK-------KCRVILNCVGPY   62 (138)
Q Consensus        30 ~~~~~~~~D~~d~~~L~~~~~-------~~dvVIn~~GPf   62 (138)
                      .++.++.+|+.|++++.++++       +.|++||++|..
T Consensus        59 ~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~lvnnAg~~   98 (266)
T 3p19_A           59 PNTLCAQVDVTDKYTFDTAITRAEKIYGPADAIVNNAGMM   98 (266)
T ss_dssp             TTEEEEECCTTCHHHHHHHHHHHHHHHCSEEEEEECCCCC
T ss_pred             CCceEEEecCCCHHHHHHHHHHHHHHCCCCCEEEECCCcC
Confidence            467889999999999999988       679999999964

>3e18_A Oxidoreductase; dehydrogenase, NAD-binding, structural genom protein structure initiative, PSI, NEW YORK structural GENO research consortium; HET: NAD; 1.95A {Listeria innocua}

Probab=91.67  E-value=1  Score=35.89  Aligned_cols=74  Identities=12%  Similarity=-0.056  Sum_probs=50.7

Q ss_pred             HHHHHh--cCcEEEecCCCccchhHHHHHHHHHcCCCeee---CCCChHHHHHHHHHhHHHHHhCCCEEEeCCCCccchH
Q psy12849         45 ILIMAK--KCRVILNCVGPYTWYGEAVVKACIEAKTHHVD---ITGEPYFMEYMQYEYNTRAQESEVCVVSACGIETLPI  119 (138)
Q Consensus        45 L~~~~~--~~dvVIn~~GPf~~~~~~v~~Aci~~g~hYvD---isge~~~~~~~~~~~~~~A~~~gv~iv~~~G~d~~p~  119 (138)
                      +.++++  +.|+|+-|. |-..+ ..++..|+++|.|.+=   ++-...-.++    +-+.|+++|+.+..+.-+-..|.
T Consensus        57 ~~~ll~~~~~D~V~i~t-p~~~h-~~~~~~al~aGkhVl~EKP~a~~~~ea~~----l~~~a~~~g~~~~v~~~~r~~p~  130 (359)
T 3e18_A           57 YEAVLADEKVDAVLIAT-PNDSH-KELAISALEAGKHVVCEKPVTMTSEDLLA----IMDVAKRVNKHFMVHQNRRWDED  130 (359)
T ss_dssp             HHHHHHCTTCCEEEECS-CGGGH-HHHHHHHHHTTCEEEEESSCCSSHHHHHH----HHHHHHHHTCCEEEECGGGGCHH
T ss_pred             HHHHhcCCCCCEEEEcC-CcHHH-HHHHHHHHHCCCCEEeeCCCcCCHHHHHH----HHHHHHHhCCeEEEEeeeccCHH
Confidence            556666  789999999 55555 4789999999999874   4444444444    34678889998877655544565


Q ss_pred             hHHHH
Q psy12849        120 DMGVL  124 (138)
Q Consensus       120 dl~~~  124 (138)
                      -..+.
T Consensus       131 ~~~~k  135 (359)
T 3e18_A          131 FLIIK  135 (359)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            44443

>4dqv_A Probable peptide synthetase NRP (peptide synthase; GXXGXXG motif, rossmann fold, short chain dehydrogenase/REDU family, reductase; 2.30A {Mycobacterium tuberculosis}

Probab=91.65  E-value=0.27  Score=40.73  Aligned_cols=52  Identities=6%  Similarity=0.047  Sum_probs=41.8

Q ss_pred             CCcceEEeeCC------CHHHHHHHHhcCcEEEecCCCccc------------hhHHHHHHHHHcCC-Cee
Q psy12849         30 RTNRTTVVNTI------NESSILIMAKKCRVILNCVGPYTW------------YGEAVVKACIEAKT-HHV   81 (138)
Q Consensus        30 ~~~~~~~~D~~------d~~~L~~~~~~~dvVIn~~GPf~~------------~~~~v~~Aci~~g~-hYv   81 (138)
                      .++.++..|+.      |.+++.++++++|+||||+|+...            -...++++|.+.|+ ++|
T Consensus       140 ~~v~~v~~Dl~~~~~gld~~~~~~~~~~~D~Vih~Aa~~~~~~~~~~~~~Nv~gt~~ll~aa~~~~~~~~V  210 (478)
T 4dqv_A          140 DRLEVVAGDKSEPDLGLDQPMWRRLAETVDLIVDSAAMVNAFPYHELFGPNVAGTAELIRIALTTKLKPFT  210 (478)
T ss_dssp             TTEEEEECCTTSGGGGCCHHHHHHHHHHCCEEEECCSSCSBSSCCEEHHHHHHHHHHHHHHHTSSSCCCEE
T ss_pred             CceEEEEeECCCcccCCCHHHHHHHHcCCCEEEECccccCCcCHHHHHHHHHHHHHHHHHHHHhCCCCeEE
Confidence            57899999998      778999999999999999997421            12468999998886 443

>2a35_A Hypothetical protein PA4017; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.2.1.2

Probab=91.60  E-value=0.023  Score=41.05  Aligned_cols=51  Identities=16%  Similarity=0.037  Sum_probs=38.3

Q ss_pred             CcceEEeeCCCHHHHHHHHhcCcEEEecCCCccc--------------hhHHHHHHHHHcCCC-eeeC
Q psy12849         31 TNRTTVVNTINESSILIMAKKCRVILNCVGPYTW--------------YGEAVVKACIEAKTH-HVDI   83 (138)
Q Consensus        31 ~~~~~~~D~~d~~~L~~~~~~~dvVIn~~GPf~~--------------~~~~v~~Aci~~g~h-YvDi   83 (138)
                      +++++.+|+.|++++.+++  +|+||||+|+...              ....++++|.+.|+. +|=+
T Consensus        47 ~~~~~~~D~~~~~~~~~~~--~d~vi~~a~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~  112 (215)
T 2a35_A           47 RLDNPVGPLAELLPQLDGS--IDTAFCCLGTTIKEAGSEEAFRAVDFDLPLAVGKRALEMGARHYLVV  112 (215)
T ss_dssp             TEECCBSCHHHHGGGCCSC--CSEEEECCCCCHHHHSSHHHHHHHHTHHHHHHHHHHHHTTCCEEEEE
T ss_pred             CceEEeccccCHHHHHHhh--hcEEEECeeeccccCCCHHHHHHhhHHHHHHHHHHHHHcCCCEEEEE
Confidence            5677888999988888877  9999999997542              124678888888764 4433

>3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans}

Probab=91.58  E-value=0.2  Score=37.27  Aligned_cols=33  Identities=15%  Similarity=0.386  Sum_probs=28.9

Q ss_pred             CCcceEEeeCCCHHHHHHHHh-------cCcEEEecCCCc
Q psy12849         30 RTNRTTVVNTINESSILIMAK-------KCRVILNCVGPY   62 (138)
Q Consensus        30 ~~~~~~~~D~~d~~~L~~~~~-------~~dvVIn~~GPf   62 (138)
                      .++.++.+|+.|++++.++++       +.|+|||++|..
T Consensus        62 ~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~vi~~Ag~~  101 (260)
T 3awd_A           62 HDVSSVVMDVTNTESVQNAVRSVHEQEGRVDILVACAGIC  101 (260)
T ss_dssp             CCEEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEECCCCC
T ss_pred             CceEEEEecCCCHHHHHHHHHHHHHHcCCCCEEEECCCCC
Confidence            368899999999999999887       689999999854

>3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase FA NAD-binding rossmann fold, structural genomics; HET: NAD; 2.40A {Lactobacillus plantarum WCFS1}

Probab=91.57  E-value=1.5  Score=34.33  Aligned_cols=70  Identities=7%  Similarity=-0.082  Sum_probs=46.6

Q ss_pred             HHHHHh--cCcEEEecCCCccchhHHHHHHHHHcCCCee-e--CCCChHHHHHHHHHhHHHHHhC-CCEEEeCCCCccch
Q psy12849         45 ILIMAK--KCRVILNCVGPYTWYGEAVVKACIEAKTHHV-D--ITGEPYFMEYMQYEYNTRAQES-EVCVVSACGIETLP  118 (138)
Q Consensus        45 L~~~~~--~~dvVIn~~GPf~~~~~~v~~Aci~~g~hYv-D--isge~~~~~~~~~~~~~~A~~~-gv~iv~~~G~d~~p  118 (138)
                      +.++++  +.|+|+-|+.| ..+ .+++..|+++|.|.+ +  ++-...-.+    ++.+.|+++ |+.++.+.-+-..|
T Consensus        63 ~~~~l~~~~~D~V~i~tp~-~~h-~~~~~~al~~G~~v~~eKp~~~~~~~~~----~l~~~a~~~~~~~~~~~~~~r~~p  136 (346)
T 3cea_A           63 YKDMIDTENIDAIFIVAPT-PFH-PEMTIYAMNAGLNVFCEKPLGLDFNEVD----EMAKVIKSHPNQIFQSGFMRRYDD  136 (346)
T ss_dssp             HHHHHTTSCCSEEEECSCG-GGH-HHHHHHHHHTTCEEEECSCCCSCHHHHH----HHHHHHHTCTTSCEECCCGGGTCH
T ss_pred             HHHHhcCCCCCEEEEeCCh-HhH-HHHHHHHHHCCCEEEEcCCCCCCHHHHH----HHHHHHHhCCCCeEEEecccccCH
Confidence            455665  68999999954 444 478889999999875 2  233332222    455778888 99887765544455


Q ss_pred             Hh
Q psy12849        119 ID  120 (138)
Q Consensus       119 ~d  120 (138)
                      .-
T Consensus       137 ~~  138 (346)
T 3cea_A          137 SY  138 (346)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain oxidoreductase, rossmann fold, oxidoreductase; HET: 1PE MES; 1.80A {Aquifex aeolicus} PDB: 2p68_A*

Probab=91.57  E-value=0.2  Score=36.93  Aligned_cols=33  Identities=18%  Similarity=0.161  Sum_probs=29.0

Q ss_pred             CCcceEEeeCCCHHHHHHHHh-------cCcEEEecCCCc
Q psy12849         30 RTNRTTVVNTINESSILIMAK-------KCRVILNCVGPY   62 (138)
Q Consensus        30 ~~~~~~~~D~~d~~~L~~~~~-------~~dvVIn~~GPf   62 (138)
                      .++.++.+|+.|++++.++++       +.|+|||++|..
T Consensus        57 ~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d~vi~~Ag~~   96 (248)
T 2pnf_A           57 VKAHGVEMNLLSEESINKAFEEIYNLVDGIDILVNNAGIT   96 (248)
T ss_dssp             CCEEEEECCTTCHHHHHHHHHHHHHHSSCCSEEEECCCCC
T ss_pred             CceEEEEccCCCHHHHHHHHHHHHHhcCCCCEEEECCCCC
Confidence            367889999999999999987       789999999954

>2z1n_A Dehydrogenase; reductase, SDR, oxidoreductase; 1.80A {Aeropyrum pernix}

Probab=91.51  E-value=0.39  Score=36.13  Aligned_cols=31  Identities=6%  Similarity=0.045  Sum_probs=28.1

Q ss_pred             CcceEEeeCCCHHHHHHHHh------cCcEEEecCCC
Q psy12849         31 TNRTTVVNTINESSILIMAK------KCRVILNCVGP   61 (138)
Q Consensus        31 ~~~~~~~D~~d~~~L~~~~~------~~dvVIn~~GP   61 (138)
                      ++.++.+|+.|++++.++++      +.|++||++|.
T Consensus        59 ~~~~~~~D~~~~~~v~~~~~~~~~~~gid~lv~~Ag~   95 (260)
T 2z1n_A           59 QVDIVAGDIREPGDIDRLFEKARDLGGADILVYSTGG   95 (260)
T ss_dssp             CEEEEECCTTCHHHHHHHHHHHHHTTCCSEEEECCCC
T ss_pred             eEEEEEccCCCHHHHHHHHHHHHHhcCCCEEEECCCC
Confidence            67889999999999999998      68999999984

>2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: SKM; 1.65A {Thermus thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A*

Probab=91.50  E-value=0.068  Score=40.97  Aligned_cols=57  Identities=12%  Similarity=0.162  Sum_probs=38.6

Q ss_pred             hcCcEEEecCCCccchh--HHHHHHHHHcCCCeeeCCCChHHHHHHHHHhHHHHHhCCCEEEeC
Q psy12849         50 KKCRVILNCVGPYTWYG--EAVVKACIEAKTHHVDITGEPYFMEYMQYEYNTRAQESEVCVVSA  111 (138)
Q Consensus        50 ~~~dvVIn~~GPf~~~~--~~v~~Aci~~g~hYvDisge~~~~~~~~~~~~~~A~~~gv~iv~~  111 (138)
                      +++|+||+|+++.....  ..+-..+++.|.+.+|++..+.-.     ++.+.++++|+.++++
T Consensus       170 ~~~Divi~~tp~~~~~~~~~~l~~~~l~~g~~viD~~~~p~~t-----~l~~~a~~~g~~~v~g  228 (263)
T 2d5c_A          170 REARLLVNATRVGLEDPSASPLPAELFPEEGAAVDLVYRPLWT-----RFLREAKAKGLKVQTG  228 (263)
T ss_dssp             GGCSEEEECSSTTTTCTTCCSSCGGGSCSSSEEEESCCSSSSC-----HHHHHHHHTTCEEECS
T ss_pred             cCCCEEEEccCCCCCCCCCCCCCHHHcCCCCEEEEeecCCccc-----HHHHHHHHCcCEEECc
Confidence            68999999997653210  122245677899999998764322     2345678889998876

>2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A

Probab=91.50  E-value=0.059  Score=41.85  Aligned_cols=60  Identities=18%  Similarity=0.023  Sum_probs=40.1

Q ss_pred             HHHHHhcCcEEEecCCCccch--hHHHHHHHHHcCCCeeeCCCChHHHHHHHHHhHHHHHhCCCEEEeC
Q psy12849         45 ILIMAKKCRVILNCVGPYTWY--GEAVVKACIEAKTHHVDITGEPYFMEYMQYEYNTRAQESEVCVVSA  111 (138)
Q Consensus        45 L~~~~~~~dvVIn~~GPf~~~--~~~v~~Aci~~g~hYvDisge~~~~~~~~~~~~~~A~~~gv~iv~~  111 (138)
                      +.+.++++|+||+|+++....  ...+-...++.|...+|++.   ..    .++-+.++++|+.++++
T Consensus       180 ~~~~~~~aDiVi~atp~~~~~~~~~~i~~~~l~~g~~viDv~~---~~----t~ll~~a~~~g~~~v~g  241 (275)
T 2hk9_A          180 PEEVIDKVQVIVNTTSVGLKDEDPEIFNYDLIKKDHVVVDIIY---KE----TKLLKKAKEKGAKLLDG  241 (275)
T ss_dssp             GGGTGGGCSEEEECSSTTSSTTCCCSSCGGGCCTTSEEEESSS---SC----CHHHHHHHHTTCEEECS
T ss_pred             HHhhhcCCCEEEEeCCCCCCCCCCCCCCHHHcCCCCEEEEcCC---Ch----HHHHHHHHHCcCEEECC
Confidence            345667899999999665421  11221345678999999987   11    23345677889999876

>2x6t_A ADP-L-glycero-D-manno-heptose-6-epimerase; isomerase, carbohydrate metabolism, stress response; HET: NAP ADP BMA; 2.36A {Escherichia coli} PDB: 2x86_A*

Probab=91.50  E-value=0.16  Score=39.69  Aligned_cols=49  Identities=8%  Similarity=0.070  Sum_probs=38.9

Q ss_pred             EEeeCCCHHHHHHHHh-----cCcEEEecCCCccch--------------hHHHHHHHHHcCCCeeeC
Q psy12849         35 TVVNTINESSILIMAK-----KCRVILNCVGPYTWY--------------GEAVVKACIEAKTHHVDI   83 (138)
Q Consensus        35 ~~~D~~d~~~L~~~~~-----~~dvVIn~~GPf~~~--------------~~~v~~Aci~~g~hYvDi   83 (138)
                      +..|+.|++.+.++++     ++|+||||+|+....              ...++++|.+.|+++|=+
T Consensus        94 ~~~d~~~~~~~~~~~~~~~~~~~d~Vih~A~~~~~~~~~~~~~~~~n~~~~~~ll~a~~~~~~r~V~~  161 (357)
T 2x6t_A           94 IADYMDKEDFLIQIMAGEEFGDVEAIFHEGACSSTTEWDGKYMMDNNYQYSKELLHYCLEREIPFLYA  161 (357)
T ss_dssp             CSEEEEHHHHHHHHHTTCCCSSCCEEEECCSCCCTTCCCHHHHHHHTHHHHHHHHHHHHHHTCCEEEE
T ss_pred             EeeecCcHHHHHHHHhhcccCCCCEEEECCcccCCccCCHHHHHHHHHHHHHHHHHHHHHcCCeEEEE
Confidence            6789999999999998     599999999976421              246899999988766643

>3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A*

Probab=91.48  E-value=0.13  Score=41.28  Aligned_cols=86  Identities=13%  Similarity=0.133  Sum_probs=54.8

Q ss_pred             ceEEeeCCCHHHHHHHHhcCcEEEecCCCccch---hHHH--HHHHHHcCCCeeeCCCChHHHHHHHHHhHHHHHhCCCE
Q psy12849         33 RTTVVNTINESSILIMAKKCRVILNCVGPYTWY---GEAV--VKACIEAKTHHVDITGEPYFMEYMQYEYNTRAQESEVC  107 (138)
Q Consensus        33 ~~~~~D~~d~~~L~~~~~~~dvVIn~~GPf~~~---~~~v--~~Aci~~g~hYvDisge~~~~~~~~~~~~~~A~~~gv~  107 (138)
                      .....+..+.+.+.+.++++|+||||. |-.-.   +.++  -...+..+.-.+|+.+.|.-+     .|-.+|+++|..
T Consensus       202 ~v~~~~~~~l~~~~~~l~~~DiIINaT-p~Gm~~~~~~~~~~~~~~l~~~~~v~D~vY~P~~T-----~ll~~A~~~G~~  275 (312)
T 3t4e_A          202 VVTVTDLADQHAFTEALASADILTNGT-KVGMKPLENESLIGDVSLLRPELLVTECVYNPHMT-----KLLQQAQQAGCK  275 (312)
T ss_dssp             EEEEEETTCHHHHHHHHHHCSEEEECS-STTSTTSTTCCSCCCGGGSCTTCEEEECCCSSSSC-----HHHHHHHHTTCE
T ss_pred             ceEEechHhhhhhHhhccCceEEEECC-cCCCCCCCCCcccCCHHHcCCCCEEEEeccCCCCC-----HHHHHHHHCCCe
Confidence            345566667555677888999999999 54321   1222  123455566678998876443     333568889998


Q ss_pred             EEeCCCCccchHhHHHHHHHHHhh
Q psy12849        108 VVSACGIETLPIDMGVLMLQDSFE  131 (138)
Q Consensus       108 iv~~~G~d~~p~dl~~~~~~~~~~  131 (138)
                      +++|.+       |+.+.++.+|+
T Consensus       276 ~~~Gl~-------MLv~Qa~~af~  292 (312)
T 3t4e_A          276 TIDGYG-------MLLWQGAEQFE  292 (312)
T ss_dssp             EECHHH-------HHHHHHHHHHH
T ss_pred             EECcHH-------HHHHHHHHHHH
Confidence            887655       55555655555

>3evn_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics; 2.00A {Streptococcus agalactiae serogroup V}

Probab=91.47  E-value=1.5  Score=34.22  Aligned_cols=75  Identities=17%  Similarity=0.024  Sum_probs=52.1

Q ss_pred             HHHHHHh--cCcEEEecCCCccchhHHHHHHHHHcCCCeee---CCCChHHHHHHHHHhHHHHHhCCCEEEeCCCCccch
Q psy12849         44 SILIMAK--KCRVILNCVGPYTWYGEAVVKACIEAKTHHVD---ITGEPYFMEYMQYEYNTRAQESEVCVVSACGIETLP  118 (138)
Q Consensus        44 ~L~~~~~--~~dvVIn~~GPf~~~~~~v~~Aci~~g~hYvD---isge~~~~~~~~~~~~~~A~~~gv~iv~~~G~d~~p  118 (138)
                      ++.+++.  +.|+|+-|+ |-..+ ..+++.|+++|.|.+=   ++-...-.+    ++-+.|+++|+.+..+.-+-..|
T Consensus        58 ~~~~ll~~~~~D~V~i~t-p~~~h-~~~~~~al~aGk~Vl~EKP~a~~~~e~~----~l~~~a~~~~~~~~v~~~~r~~p  131 (329)
T 3evn_A           58 KLEDMLADESIDVIYVAT-INQDH-YKVAKAALLAGKHVLVEKPFTLTYDQAN----ELFALAESCNLFLMEAQKSVFIP  131 (329)
T ss_dssp             CHHHHHTCTTCCEEEECS-CGGGH-HHHHHHHHHTTCEEEEESSCCSSHHHHH----HHHHHHHHTTCCEEEECSSCSSH
T ss_pred             CHHHHhcCCCCCEEEECC-CcHHH-HHHHHHHHHCCCeEEEccCCcCCHHHHH----HHHHHHHHcCCEEEEEEcccCCH
Confidence            4667777  789999999 54555 4789999999999763   344443343    34477899999888776554566


Q ss_pred             HhHHHH
Q psy12849        119 IDMGVL  124 (138)
Q Consensus       119 ~dl~~~  124 (138)
                      .-..+.
T Consensus       132 ~~~~~~  137 (329)
T 3evn_A          132 MTQVIK  137 (329)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            544443

>2uvd_A 3-oxoacyl-(acyl-carrier-protein) reductase; beta-ketoacyl- (acyl carrier protein) reductase, short-chain dehydrogenase/reductase (SDR); 2.4A {Bacillus anthracis}

Probab=91.46  E-value=0.19  Score=37.56  Aligned_cols=33  Identities=15%  Similarity=0.226  Sum_probs=28.8

Q ss_pred             CCcceEEeeCCCHHHHHHHHh-------cCcEEEecCCCc
Q psy12849         30 RTNRTTVVNTINESSILIMAK-------KCRVILNCVGPY   62 (138)
Q Consensus        30 ~~~~~~~~D~~d~~~L~~~~~-------~~dvVIn~~GPf   62 (138)
                      .++.++.+|+.|++++.++++       +.|++||++|..
T Consensus        54 ~~~~~~~~D~~~~~~~~~~~~~~~~~~g~id~lv~nAg~~   93 (246)
T 2uvd_A           54 SDAIAVRADVANAEDVTNMVKQTVDVFGQVDILVNNAGVT   93 (246)
T ss_dssp             CCEEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEECCCCC
T ss_pred             CcEEEEEcCCCCHHHHHHHHHHHHHHcCCCCEEEECCCCC
Confidence            367889999999999999988       689999999954

>2hq1_A Glucose/ribitol dehydrogenase; CTH-1438, structural genomics, southeast collaboratory for structural genomics, secsg, PSI; 1.90A {Clostridium thermocellum}

Probab=91.37  E-value=0.18  Score=37.30  Aligned_cols=33  Identities=15%  Similarity=0.122  Sum_probs=27.1

Q ss_pred             CCcceEEeeCCCHHHHHHHHh-------cCcEEEecCCCc
Q psy12849         30 RTNRTTVVNTINESSILIMAK-------KCRVILNCVGPY   62 (138)
Q Consensus        30 ~~~~~~~~D~~d~~~L~~~~~-------~~dvVIn~~GPf   62 (138)
                      .++.++.+|+.|++++.++++       +.|+|||++|..
T Consensus        55 ~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d~vi~~Ag~~   94 (247)
T 2hq1_A           55 INVVVAKGDVKNPEDVENMVKTAMDAFGRIDILVNNAGIT   94 (247)
T ss_dssp             CCEEEEESCTTSHHHHHHHHHHHHHHHSCCCEEEECC---
T ss_pred             CcEEEEECCCCCHHHHHHHHHHHHHhcCCCCEEEECCCCC
Confidence            467889999999999999888       689999999864

>2glx_A 1,5-anhydro-D-fructose reductase; NADP(H) dependent reductase, rossmann-fold, sugar metabolism, 1,5-anhydro-D-mannitol, oxidoreductase; HET: NDP; 2.20A {Ensifer adhaerens}

Probab=91.36  E-value=1.6  Score=33.85  Aligned_cols=72  Identities=11%  Similarity=0.047  Sum_probs=48.0

Q ss_pred             HHHHHh--cCcEEEecCCCccchhHHHHHHHHHcCCCee-e--CCCChHHHHHHHHHhHHHHHhCCCEEEeCCCCccchH
Q psy12849         45 ILIMAK--KCRVILNCVGPYTWYGEAVVKACIEAKTHHV-D--ITGEPYFMEYMQYEYNTRAQESEVCVVSACGIETLPI  119 (138)
Q Consensus        45 L~~~~~--~~dvVIn~~GPf~~~~~~v~~Aci~~g~hYv-D--isge~~~~~~~~~~~~~~A~~~gv~iv~~~G~d~~p~  119 (138)
                      +.++++  +.|+|+-|+.| ..+ .+++..|+++|.|.+ +  ++....-.+    ++.+.|+++|+.++.+.-+-..|.
T Consensus        54 ~~~~l~~~~~D~V~i~tp~-~~h-~~~~~~al~~Gk~v~~ekP~~~~~~~~~----~l~~~a~~~g~~~~~~~~~r~~p~  127 (332)
T 2glx_A           54 VEELVGDPDVDAVYVSTTN-ELH-REQTLAAIRAGKHVLCEKPLAMTLEDAR----EMVVAAREAGVVLGTNHHLRNAAA  127 (332)
T ss_dssp             HHHHHTCTTCCEEEECSCG-GGH-HHHHHHHHHTTCEEEECSSSCSSHHHHH----HHHHHHHHHTCCEEECCCGGGSHH
T ss_pred             HHHHhcCCCCCEEEEeCCh-hHh-HHHHHHHHHCCCeEEEeCCCcCCHHHHH----HHHHHHHHcCCEEEEeehhhcCHH
Confidence            455665  59999999954 445 478889999999865 2  333333333    455778889998887755444554


Q ss_pred             hHH
Q psy12849        120 DMG  122 (138)
Q Consensus       120 dl~  122 (138)
                      -..
T Consensus       128 ~~~  130 (332)
T 2glx_A          128 HRA  130 (332)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            333

>1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A*

Probab=91.33  E-value=0.34  Score=37.43  Aligned_cols=71  Identities=13%  Similarity=0.091  Sum_probs=45.1

Q ss_pred             cCcEEEecCCCccchhH--HHHHHHHHcCCCeeeCCCChHH-HHHHHHHhHHHHHhCCCE-EEeCCCCccchHhHHHHHH
Q psy12849         51 KCRVILNCVGPYTWYGE--AVVKACIEAKTHHVDITGEPYF-MEYMQYEYNTRAQESEVC-VVSACGIETLPIDMGVLML  126 (138)
Q Consensus        51 ~~dvVIn~~GPf~~~~~--~v~~Aci~~g~hYvDisge~~~-~~~~~~~~~~~A~~~gv~-iv~~~G~d~~p~dl~~~~~  126 (138)
                      ++|+||||+|. ...+.  ++-..++..|...+|+...+.. ++     +..+|+++|.. +++|.       .++....
T Consensus       180 ~~DivIn~t~~-~~~~~~~~i~~~~l~~~~~v~D~~y~p~~~t~-----ll~~a~~~G~~~~v~G~-------~mLv~Qa  246 (272)
T 1p77_A          180 TYDLVINATSA-GLSGGTASVDAEILKLGSAFYDMQYAKGTDTP-----FIALCKSLGLTNVSDGF-------GMLVAQA  246 (272)
T ss_dssp             CCSEEEECCCC--------CCCHHHHHHCSCEEESCCCTTSCCH-----HHHHHHHTTCCCEECSH-------HHHHHHH
T ss_pred             CCCEEEECCCC-CCCCCCCCCCHHHcCCCCEEEEeeCCCCcCCH-----HHHHHHHcCCCEeeCCH-------HHHHHHH
Confidence            79999999953 33221  1334567889999999886544 32     34668899998 88753       3555555


Q ss_pred             HHHhhhhc
Q psy12849        127 QDSFEGHS  134 (138)
Q Consensus       127 ~~~~~~~~  134 (138)
                      +.+|+.-+
T Consensus       247 ~~af~~w~  254 (272)
T 1p77_A          247 AHSFHLWR  254 (272)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            55555433

>3c1a_A Putative oxidoreductase; ZP_00056571.1, oxidoreductase FAM binding rossmann fold, structural genomics; HET: MSE PG4 PGE; 1.85A {Magnetospirillum magnetotacticum}

Probab=91.30  E-value=0.77  Score=35.73  Aligned_cols=74  Identities=12%  Similarity=0.016  Sum_probs=49.6

Q ss_pred             HHHHHh--cCcEEEecCCCccchhHHHHHHHHHcCCCee-e--CCCChHHHHHHHHHhHHHHHhCCCEEEeCCCCccchH
Q psy12849         45 ILIMAK--KCRVILNCVGPYTWYGEAVVKACIEAKTHHV-D--ITGEPYFMEYMQYEYNTRAQESEVCVVSACGIETLPI  119 (138)
Q Consensus        45 L~~~~~--~~dvVIn~~GPf~~~~~~v~~Aci~~g~hYv-D--isge~~~~~~~~~~~~~~A~~~gv~iv~~~G~d~~p~  119 (138)
                      +.++++  ++|+|+-|+.| ..+ .++++.|+++|.|.+ +  ++-...-.+    ++.+.|+++|+.+..+.-+-..|.
T Consensus        61 ~~~~l~~~~~D~V~i~tp~-~~h-~~~~~~al~~Gk~v~~eKP~~~~~~~~~----~l~~~a~~~g~~~~~~~~~r~~p~  134 (315)
T 3c1a_A           61 WRSVVSAPEVEAVIIATPP-ATH-AEITLAAIASGKAVLVEKPLTLDLAEAE----AVAAAAKATGVMVWVEHTQLFNPA  134 (315)
T ss_dssp             THHHHTCTTCCEEEEESCG-GGH-HHHHHHHHHTTCEEEEESSSCSCHHHHH----HHHHHHHHHCCCEEEECGGGGCHH
T ss_pred             HHHHhhCCCCCEEEEeCCh-HHH-HHHHHHHHHCCCcEEEcCCCcCCHHHHH----HHHHHHHHcCCEEEEeechhcCHH
Confidence            456665  79999999944 445 478889999999865 3  222332222    455778889998887765555565


Q ss_pred             hHHHH
Q psy12849        120 DMGVL  124 (138)
Q Consensus       120 dl~~~  124 (138)
                      -..+.
T Consensus       135 ~~~~~  139 (315)
T 3c1a_A          135 WEALK  139 (315)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            54443

>3a28_C L-2.3-butanediol dehydrogenase; chiral substrate recognition, oxidoreductase; HET: NAD; 2.00A {Brevibacterium saccharolyticum}

Probab=91.27  E-value=0.22  Score=37.48  Aligned_cols=33  Identities=9%  Similarity=0.068  Sum_probs=28.9

Q ss_pred             CCcceEEeeCCCHHHHHHHHh-------cCcEEEecCCCc
Q psy12849         30 RTNRTTVVNTINESSILIMAK-------KCRVILNCVGPY   62 (138)
Q Consensus        30 ~~~~~~~~D~~d~~~L~~~~~-------~~dvVIn~~GPf   62 (138)
                      .++.++.+|+.|++++.++++       +.|++||++|..
T Consensus        53 ~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iD~lv~nAg~~   92 (258)
T 3a28_C           53 QKAVFVGLDVTDKANFDSAIDEAAEKLGGFDVLVNNAGIA   92 (258)
T ss_dssp             CCEEEEECCTTCHHHHHHHHHHHHHHHTCCCEEEECCCCC
T ss_pred             CcEEEEEccCCCHHHHHHHHHHHHHHhCCCCEEEECCCCC
Confidence            467889999999999999887       689999999954

>2cfc_A 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidoreductase; HET: NAD KPC; 1.8A {Xanthobacter autotrophicus}

Probab=91.27  E-value=0.18  Score=37.28  Aligned_cols=33  Identities=12%  Similarity=0.095  Sum_probs=28.8

Q ss_pred             CCcceEEeeCCCHHHHHHHHh-------cCcEEEecCCCc
Q psy12849         30 RTNRTTVVNTINESSILIMAK-------KCRVILNCVGPY   62 (138)
Q Consensus        30 ~~~~~~~~D~~d~~~L~~~~~-------~~dvVIn~~GPf   62 (138)
                      .++.++.+|+.|++++.++++       +.|+|||++|..
T Consensus        52 ~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~li~~Ag~~   91 (250)
T 2cfc_A           52 DKVLRVRADVADEGDVNAAIAATMEQFGAIDVLVNNAGIT   91 (250)
T ss_dssp             GGEEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEECCCCC
T ss_pred             CcEEEEEecCCCHHHHHHHHHHHHHHhCCCCEEEECCCCC
Confidence            357889999999999999988       789999999853

>1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain dehydrogenase/reductase, bIle acid catabolism, oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli} SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A*

Probab=91.24  E-value=0.21  Score=37.02  Aligned_cols=33  Identities=15%  Similarity=0.192  Sum_probs=29.0

Q ss_pred             CCcceEEeeCCCHHHHHHHHh-------cCcEEEecCCCc
Q psy12849         30 RTNRTTVVNTINESSILIMAK-------KCRVILNCVGPY   62 (138)
Q Consensus        30 ~~~~~~~~D~~d~~~L~~~~~-------~~dvVIn~~GPf   62 (138)
                      .++.++.+|+.|++++.++++       +.|+|||++|..
T Consensus        60 ~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d~vi~~Ag~~   99 (255)
T 1fmc_A           60 GQAFACRCDITSEQELSALADFAISKLGKVDILVNNAGGG   99 (255)
T ss_dssp             CCEEEEECCTTCHHHHHHHHHHHHHHHSSCCEEEECCCCC
T ss_pred             CceEEEEcCCCCHHHHHHHHHHHHHhcCCCCEEEECCCCC
Confidence            367888999999999999987       799999999854

>4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.80A {Xanthobacter autotrophicus}

Probab=91.24  E-value=0.21  Score=38.41  Aligned_cols=33  Identities=12%  Similarity=0.174  Sum_probs=29.5

Q ss_pred             CCcceEEeeCCCHHHHHHHHh-------cCcEEEecCCCc
Q psy12849         30 RTNRTTVVNTINESSILIMAK-------KCRVILNCVGPY   62 (138)
Q Consensus        30 ~~~~~~~~D~~d~~~L~~~~~-------~~dvVIn~~GPf   62 (138)
                      .++.++++|+.|++++.++++       +.|++||++|..
T Consensus        74 ~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~lVnnAg~~  113 (272)
T 4dyv_A           74 DDALCVPTDVTDPDSVRALFTATVEKFGRVDVLFNNAGTG  113 (272)
T ss_dssp             SCCEEEECCTTSHHHHHHHHHHHHHHHSCCCEEEECCCCC
T ss_pred             CCeEEEEecCCCHHHHHHHHHHHHHHcCCCCEEEECCCCC
Confidence            468899999999999999988       789999999964

>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0

Probab=91.22  E-value=0.22  Score=37.83  Aligned_cols=33  Identities=18%  Similarity=0.185  Sum_probs=29.4

Q ss_pred             CCcceEEeeCCCHHHHHHHHh-------cCcEEEecCCCc
Q psy12849         30 RTNRTTVVNTINESSILIMAK-------KCRVILNCVGPY   62 (138)
Q Consensus        30 ~~~~~~~~D~~d~~~L~~~~~-------~~dvVIn~~GPf   62 (138)
                      .++.++++|+.|++++.++++       +.|++||++|..
T Consensus        71 ~~~~~~~~D~~~~~~v~~~~~~~~~~~g~id~lv~nAg~~  110 (287)
T 3pxx_A           71 RKAYTAEVDVRDRAAVSRELANAVAEFGKLDVVVANAGIC  110 (287)
T ss_dssp             SCEEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEECCCCC
T ss_pred             CceEEEEccCCCHHHHHHHHHHHHHHcCCCCEEEECCCcC
Confidence            468899999999999999888       689999999964

>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}

Probab=91.21  E-value=0.41  Score=37.12  Aligned_cols=33  Identities=12%  Similarity=0.155  Sum_probs=29.1

Q ss_pred             CCcceEEeeCCCHHHHHHHHh-------cCcEEEecCCCc
Q psy12849         30 RTNRTTVVNTINESSILIMAK-------KCRVILNCVGPY   62 (138)
Q Consensus        30 ~~~~~~~~D~~d~~~L~~~~~-------~~dvVIn~~GPf   62 (138)
                      .++.++.+|+.|++++.++++       +.|++||++|..
T Consensus        80 ~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~id~lvnnAg~~  119 (301)
T 3tjr_A           80 FDAHGVVCDVRHLDEMVRLADEAFRLLGGVDVVFSNAGIV  119 (301)
T ss_dssp             CCEEEEECCTTCHHHHHHHHHHHHHHHSSCSEEEECCCCC
T ss_pred             CceEEEEccCCCHHHHHHHHHHHHHhCCCCCEEEECCCcC
Confidence            467899999999999999987       679999999954

>2q2v_A Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidoreductase; HET: NAD; 1.90A {Pseudomonas putida} PDB: 2q2q_A* 2q2w_A

Probab=91.18  E-value=0.19  Score=37.80  Aligned_cols=33  Identities=9%  Similarity=0.057  Sum_probs=28.7

Q ss_pred             CCcceEEeeCCCHHHHHHHHh-------cCcEEEecCCCc
Q psy12849         30 RTNRTTVVNTINESSILIMAK-------KCRVILNCVGPY   62 (138)
Q Consensus        30 ~~~~~~~~D~~d~~~L~~~~~-------~~dvVIn~~GPf   62 (138)
                      .++.++.+|+.|++++.++++       +.|++||++|..
T Consensus        51 ~~~~~~~~D~~~~~~v~~~~~~~~~~~g~id~lv~~Ag~~   90 (255)
T 2q2v_A           51 VKAVHHPADLSDVAQIEALFALAEREFGGVDILVNNAGIQ   90 (255)
T ss_dssp             CCEEEECCCTTSHHHHHHHHHHHHHHHSSCSEEEECCCCC
T ss_pred             CceEEEeCCCCCHHHHHHHHHHHHHHcCCCCEEEECCCCC
Confidence            357788999999999999998       789999999853

>4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold, peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA; 1.84A {Homo sapiens} PDB: 4fc6_A*

Probab=91.14  E-value=0.42  Score=36.46  Aligned_cols=32  Identities=9%  Similarity=0.311  Sum_probs=28.4

Q ss_pred             CCcceEEeeCCCHHHHHHHHh-------cCcEEEecCCC
Q psy12849         30 RTNRTTVVNTINESSILIMAK-------KCRVILNCVGP   61 (138)
Q Consensus        30 ~~~~~~~~D~~d~~~L~~~~~-------~~dvVIn~~GP   61 (138)
                      .++.++++|+.|++++.++++       +.|++||++|.
T Consensus        77 ~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~id~lv~nAg~  115 (277)
T 4fc7_A           77 RRCLPLSMDVRAPPAVMAAVDQALKEFGRIDILINCAAG  115 (277)
T ss_dssp             SCEEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred             CcEEEEEcCCCCHHHHHHHHHHHHHHcCCCCEEEECCcC
Confidence            467899999999999999887       67999999984

>3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain dehydrogenase/reductase, 4-pyridoxola NAD+, oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti} PDB: 3ndr_A* 3nug_A*

Probab=91.10  E-value=0.31  Score=36.57  Aligned_cols=33  Identities=9%  Similarity=0.162  Sum_probs=29.0

Q ss_pred             CCcceEEeeCCCHHHHHHHHh-------cCcEEEecCCCc
Q psy12849         30 RTNRTTVVNTINESSILIMAK-------KCRVILNCVGPY   62 (138)
Q Consensus        30 ~~~~~~~~D~~d~~~L~~~~~-------~~dvVIn~~GPf   62 (138)
                      .++.++++|+.|++++.++++       +.|++||++|..
T Consensus        52 ~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~id~lv~nAg~~   91 (247)
T 3rwb_A           52 KKARAIAADISDPGSVKALFAEIQALTGGIDILVNNASIV   91 (247)
T ss_dssp             TTEEECCCCTTCHHHHHHHHHHHHHHHSCCSEEEECCCCC
T ss_pred             CceEEEEcCCCCHHHHHHHHHHHHHHCCCCCEEEECCCCC
Confidence            467889999999999999988       689999999954

>2ixa_A Alpha-N-acetylgalactosaminidase; NAD, A-ECO conversion, hydrolase; HET: NAD; 2.3A {Flavobacterium meningosepticum} PDB: 2ixb_A*

Probab=91.06  E-value=0.88  Score=37.39  Aligned_cols=74  Identities=12%  Similarity=0.018  Sum_probs=48.5

Q ss_pred             HHHHHHh--cCcEEEecCCCccchhHHHHHHHHHcCCCeee---CCCChHHHHHHHHHhHHHHHhCCCEEEeCCCCccch
Q psy12849         44 SILIMAK--KCRVILNCVGPYTWYGEAVVKACIEAKTHHVD---ITGEPYFMEYMQYEYNTRAQESEVCVVSACGIETLP  118 (138)
Q Consensus        44 ~L~~~~~--~~dvVIn~~GPf~~~~~~v~~Aci~~g~hYvD---isge~~~~~~~~~~~~~~A~~~gv~iv~~~G~d~~p  118 (138)
                      ++.++++  +.|+|+-|+ |-..+ .+++.+|+++|.|.+=   ++-...-.+    ++-+.|+++|+.+..+..+-..|
T Consensus        82 ~~~~ll~~~~vD~V~i~t-p~~~h-~~~~~~al~aGkhV~~EKP~a~~~~ea~----~l~~~a~~~g~~~~v~~~~r~~p  155 (444)
T 2ixa_A           82 DYKNMLKDKNIDAVFVSS-PWEWH-HEHGVAAMKAGKIVGMEVSGAITLEECW----DYVKVSEQTGVPLMALENVCYRR  155 (444)
T ss_dssp             THHHHTTCTTCCEEEECC-CGGGH-HHHHHHHHHTTCEEEECCCCCSSHHHHH----HHHHHHHHHCCCEEECCGGGGCH
T ss_pred             CHHHHhcCCCCCEEEEcC-CcHHH-HHHHHHHHHCCCeEEEeCCCcCCHHHHH----HHHHHHHHhCCeEEEEeccccCH
Confidence            4667776  589999999 54555 4788999999999763   233333333    44467888898877654433345


Q ss_pred             HhHHH
Q psy12849        119 IDMGV  123 (138)
Q Consensus       119 ~dl~~  123 (138)
                      .-..+
T Consensus       156 ~~~~~  160 (444)
T 2ixa_A          156 DVMAI  160 (444)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            44333

>3q2i_A Dehydrogenase; rossmann fold, UDP-sugar binding, NAD binding oxidoreductase; HET: NAD HP7; 1.50A {Chromobacterium violaceum} PDB: 3q2k_A*

Probab=91.06  E-value=1.2  Score=35.15  Aligned_cols=73  Identities=11%  Similarity=-0.025  Sum_probs=50.0

Q ss_pred             HHHHHh--cCcEEEecCCCccchhHHHHHHHHHcCCCeee---CCCChHHHHHHHHHhHHHHHhCCCEEEeCCCCccchH
Q psy12849         45 ILIMAK--KCRVILNCVGPYTWYGEAVVKACIEAKTHHVD---ITGEPYFMEYMQYEYNTRAQESEVCVVSACGIETLPI  119 (138)
Q Consensus        45 L~~~~~--~~dvVIn~~GPf~~~~~~v~~Aci~~g~hYvD---isge~~~~~~~~~~~~~~A~~~gv~iv~~~G~d~~p~  119 (138)
                      +.++++  +.|+|+-|. |-..+ .+++..|+++|.|.+=   ++....-.+    ++-+.|+++|+.+..+.-+-..|.
T Consensus        67 ~~~ll~~~~~D~V~i~t-p~~~h-~~~~~~al~~gk~v~~EKP~a~~~~~~~----~l~~~a~~~g~~~~v~~~~r~~p~  140 (354)
T 3q2i_A           67 LTDMLAQTDADIVILTT-PSGLH-PTQSIECSEAGFHVMTEKPMATRWEDGL----EMVKAADKAKKHLFVVKQNRRNAT  140 (354)
T ss_dssp             HHHHHHHCCCSEEEECS-CGGGH-HHHHHHHHHTTCEEEECSSSCSSHHHHH----HHHHHHHHHTCCEEECCGGGGSHH
T ss_pred             HHHHhcCCCCCEEEECC-CcHHH-HHHHHHHHHCCCCEEEeCCCcCCHHHHH----HHHHHHHHhCCeEEEEEcccCCHH
Confidence            445565  789999999 54555 4788999999999874   344444333    444678889999887766555664


Q ss_pred             hHHH
Q psy12849        120 DMGV  123 (138)
Q Consensus       120 dl~~  123 (138)
                      -..+
T Consensus       141 ~~~~  144 (354)
T 3q2i_A          141 LQLL  144 (354)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            4333

>1spx_A Short-chain reductase family member (5L265); parallel beta-sheet of seven strands in the order 3214567; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=91.04  E-value=0.18  Score=38.33  Aligned_cols=33  Identities=12%  Similarity=0.205  Sum_probs=28.0

Q ss_pred             CCcceEEeeCCCHHHHHHHHh-------cCcEEEecCCCc
Q psy12849         30 RTNRTTVVNTINESSILIMAK-------KCRVILNCVGPY   62 (138)
Q Consensus        30 ~~~~~~~~D~~d~~~L~~~~~-------~~dvVIn~~GPf   62 (138)
                      .++.++.+|+.|++++.++++       +.|++||++|..
T Consensus        58 ~~~~~~~~D~~~~~~~~~~~~~~~~~~g~id~lv~~Ag~~   97 (278)
T 1spx_A           58 QNVNSVVADVTTDAGQDEILSTTLGKFGKLDILVNNAGAA   97 (278)
T ss_dssp             GGEEEEECCTTSHHHHHHHHHHHHHHHSCCCEEEECCC--
T ss_pred             CceeEEecccCCHHHHHHHHHHHHHHcCCCCEEEECCCCC
Confidence            357789999999999999998       789999999854

>2yv2_A Succinyl-COA synthetase alpha chain; COA-binding domain, ligase, structural genomics, NPPSFA; 2.20A {Aeropyrum pernix}

Probab=91.02  E-value=0.74  Score=36.36  Aligned_cols=65  Identities=14%  Similarity=0.120  Sum_probs=44.0

Q ss_pred             HHHHHHh--c-CcEEEecCCCccchhHHHHHHHHHcCCC-eeeCCCChHHHHHHHHHhHHHHHhCCCEEE-eCC
Q psy12849         44 SILIMAK--K-CRVILNCVGPYTWYGEAVVKACIEAKTH-HVDITGEPYFMEYMQYEYNTRAQESEVCVV-SAC  112 (138)
Q Consensus        44 ~L~~~~~--~-~dvVIn~~GPf~~~~~~v~~Aci~~g~h-YvDisge~~~~~~~~~~~~~~A~~~gv~iv-~~~  112 (138)
                      ++.++.+  + .|++|-++.|. .. ..+++.|++.|++ -|=++.-.+- .+ ..++.+.|++.|+.++ |.|
T Consensus        61 sl~el~~~~~~~DvaIi~vp~~-~~-~~~v~ea~~~Gi~~vVi~t~G~~~-~~-~~~l~~~A~~~gi~viGPNc  130 (297)
T 2yv2_A           61 SVKEALAEHPEINTSIVFVPAP-FA-PDAVYEAVDAGIRLVVVITEGIPV-HD-TMRFVNYARQKGATIIGPNC  130 (297)
T ss_dssp             SHHHHHHHCTTCCEEEECCCGG-GH-HHHHHHHHHTTCSEEEECCCCCCH-HH-HHHHHHHHHHHTCEEECSSS
T ss_pred             CHHHHhhcCCCCCEEEEecCHH-HH-HHHHHHHHHCCCCEEEEECCCCCH-HH-HHHHHHHHHHcCCEEEcCCC
Confidence            3566666  5 99999999553 33 5899999999999 4434432221 12 2366678899999887 444

>2bd0_A Sepiapterin reductase; oxidoreductase; HET: NAP BIO; 1.70A {Chlorobium tepidum} SCOP: c.2.1.2

Probab=90.99  E-value=0.2  Score=37.04  Aligned_cols=33  Identities=9%  Similarity=0.109  Sum_probs=28.8

Q ss_pred             CCcceEEeeCCCHHHHHHHHh-------cCcEEEecCCCc
Q psy12849         30 RTNRTTVVNTINESSILIMAK-------KCRVILNCVGPY   62 (138)
Q Consensus        30 ~~~~~~~~D~~d~~~L~~~~~-------~~dvVIn~~GPf   62 (138)
                      .++.++.+|+.|++++.++++       +.|+|||++|..
T Consensus        58 ~~~~~~~~D~~~~~~v~~~~~~~~~~~g~id~li~~Ag~~   97 (244)
T 2bd0_A           58 ALTDTITADISDMADVRRLTTHIVERYGHIDCLVNNAGVG   97 (244)
T ss_dssp             CEEEEEECCTTSHHHHHHHHHHHHHHTSCCSEEEECCCCC
T ss_pred             CeeeEEEecCCCHHHHHHHHHHHHHhCCCCCEEEEcCCcC
Confidence            357889999999999999987       589999999954

>3e03_A Short chain dehydrogenase; structural genomics, PSI-2, protein structure initiative, NEW YORK structural genomix research consortium; 1.69A {Xanthomonas campestris PV}

Probab=90.99  E-value=0.37  Score=36.75  Aligned_cols=33  Identities=6%  Similarity=0.059  Sum_probs=28.4

Q ss_pred             CCcceEEeeCCCHHHHHHHHh-------cCcEEEecCCCc
Q psy12849         30 RTNRTTVVNTINESSILIMAK-------KCRVILNCVGPY   62 (138)
Q Consensus        30 ~~~~~~~~D~~d~~~L~~~~~-------~~dvVIn~~GPf   62 (138)
                      .++.++.+|+.|++++.++++       +.|++||++|..
T Consensus        62 ~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iD~lvnnAG~~  101 (274)
T 3e03_A           62 GQGLALKCDIREEDQVRAAVAATVDTFGGIDILVNNASAI  101 (274)
T ss_dssp             SEEEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEECCCCC
T ss_pred             CeEEEEeCCCCCHHHHHHHHHHHHHHcCCCCEEEECCCcc
Confidence            356789999999999999887       579999999953

>4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.00A {Rhizobium etli}

Probab=90.96  E-value=0.43  Score=36.59  Aligned_cols=33  Identities=15%  Similarity=0.104  Sum_probs=28.8

Q ss_pred             CCcceEEeeCCCHHHHHHHHh-------cCcEEEecCCCc
Q psy12849         30 RTNRTTVVNTINESSILIMAK-------KCRVILNCVGPY   62 (138)
Q Consensus        30 ~~~~~~~~D~~d~~~L~~~~~-------~~dvVIn~~GPf   62 (138)
                      .++.++++|+.|++++.++++       +.|++||++|..
T Consensus        73 ~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~lv~nAg~~  112 (277)
T 4dqx_A           73 SKAFGVRVDVSSAKDAESMVEKTTAKWGRVDVLVNNAGFG  112 (277)
T ss_dssp             TTEEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEECCCCC
T ss_pred             CceEEEEecCCCHHHHHHHHHHHHHHcCCCCEEEECCCcC
Confidence            467889999999999999988       679999999943

>3moi_A Probable dehydrogenase; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics; 2.50A {Bordetella bronchiseptica}

Probab=90.96  E-value=1.5  Score=35.20  Aligned_cols=74  Identities=11%  Similarity=0.014  Sum_probs=49.4

Q ss_pred             HHHHHh--cCcEEEecCCCccchhHHHHHHHHHcCCCeee---CCCChHHHHHHHHHhHHHHHhCCCEEEeCCCCccchH
Q psy12849         45 ILIMAK--KCRVILNCVGPYTWYGEAVVKACIEAKTHHVD---ITGEPYFMEYMQYEYNTRAQESEVCVVSACGIETLPI  119 (138)
Q Consensus        45 L~~~~~--~~dvVIn~~GPf~~~~~~v~~Aci~~g~hYvD---isge~~~~~~~~~~~~~~A~~~gv~iv~~~G~d~~p~  119 (138)
                      +.++++  +.|+|+.|..| ..+ ..++..|+++|.|.+=   ++-...-.+    ++-+.|+++|+.+..+.-.-..|.
T Consensus        56 ~~ell~~~~vD~V~i~tp~-~~H-~~~~~~al~aGk~Vl~EKP~a~~~~e~~----~l~~~a~~~g~~~~v~~~~R~~p~  129 (387)
T 3moi_A           56 LAEMMQHVQMDAVYIASPH-QFH-CEHVVQASEQGLHIIVEKPLTLSRDEAD----RMIEAVERAGVHLVVGTSRSHDPV  129 (387)
T ss_dssp             HHHHHHHSCCSEEEECSCG-GGH-HHHHHHHHHTTCEEEECSCCCSCHHHHH----HHHHHHHHHTCCEEECCCGGGSHH
T ss_pred             HHHHHcCCCCCEEEEcCCc-HHH-HHHHHHHHHCCCceeeeCCccCCHHHHH----HHHHHHHHhCCeEEEEeccccCHH
Confidence            455665  48999999954 455 4789999999999863   233333333    444778899998877765444555


Q ss_pred             hHHHH
Q psy12849        120 DMGVL  124 (138)
Q Consensus       120 dl~~~  124 (138)
                      -..+.
T Consensus       130 ~~~~k  134 (387)
T 3moi_A          130 VRTLR  134 (387)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            44443

>3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} SCOP: c.2.1.0 PDB: 3tn7_A*

Probab=90.95  E-value=0.19  Score=37.15  Aligned_cols=33  Identities=12%  Similarity=0.043  Sum_probs=29.2

Q ss_pred             CCcceEEeeCCCHHHHHHHHh-------cCcEEEecCCCc
Q psy12849         30 RTNRTTVVNTINESSILIMAK-------KCRVILNCVGPY   62 (138)
Q Consensus        30 ~~~~~~~~D~~d~~~L~~~~~-------~~dvVIn~~GPf   62 (138)
                      .++.++.+|+.|++++.++++       +.|++||++|..
T Consensus        52 ~~~~~~~~D~~~~~~v~~~~~~~~~~~g~id~li~~Ag~~   91 (235)
T 3l77_A           52 VEVFYHHLDVSKAESVEEFSKKVLERFGDVDVVVANAGLG   91 (235)
T ss_dssp             CCEEEEECCTTCHHHHHHHCC-HHHHHSSCSEEEECCCCC
T ss_pred             CeEEEEEeccCCHHHHHHHHHHHHHhcCCCCEEEECCccc
Confidence            468899999999999999987       679999999964

>2yut_A Putative short-chain oxidoreductase; alpha and beta proteins (A/B), NAD(P)-binding rossmann-fold structural genomics, NPPSFA; HET: NAP; 2.20A {Thermus thermophilus}

Probab=90.94  E-value=0.13  Score=36.92  Aligned_cols=30  Identities=13%  Similarity=0.205  Sum_probs=27.6

Q ss_pred             ceEEeeCCCHHHHHHHHh---cCcEEEecCCCc
Q psy12849         33 RTTVVNTINESSILIMAK---KCRVILNCVGPY   62 (138)
Q Consensus        33 ~~~~~D~~d~~~L~~~~~---~~dvVIn~~GPf   62 (138)
                      .++.+|+.|++++.++++   +.|+|||++|..
T Consensus        45 ~~~~~D~~~~~~~~~~~~~~~~id~vi~~ag~~   77 (207)
T 2yut_A           45 RALPADLADELEAKALLEEAGPLDLLVHAVGKA   77 (207)
T ss_dssp             EECCCCTTSHHHHHHHHHHHCSEEEEEECCCCC
T ss_pred             cEEEeeCCCHHHHHHHHHhcCCCCEEEECCCcC
Confidence            788899999999999999   899999999954

>3un1_A Probable oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.45A {Sinorhizobium meliloti}

Probab=90.84  E-value=0.2  Score=38.07  Aligned_cols=33  Identities=9%  Similarity=0.133  Sum_probs=28.9

Q ss_pred             CCcceEEeeCCCHHHHHHHHh-------cCcEEEecCCCc
Q psy12849         30 RTNRTTVVNTINESSILIMAK-------KCRVILNCVGPY   62 (138)
Q Consensus        30 ~~~~~~~~D~~d~~~L~~~~~-------~~dvVIn~~GPf   62 (138)
                      .++.++.+|+.|++++.++++       +.|++||++|-.
T Consensus        68 ~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~lv~nAg~~  107 (260)
T 3un1_A           68 PDIHTVAGDISKPETADRIVREGIERFGRIDSLVNNAGVF  107 (260)
T ss_dssp             TTEEEEESCTTSHHHHHHHHHHHHHHHSCCCEEEECCCCC
T ss_pred             CceEEEEccCCCHHHHHHHHHHHHHHCCCCCEEEECCCCC
Confidence            357789999999999999988       789999999854

>1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty acid synthesis, short-chain dehydrogenases/reductases, structural genomics; HET: ADE; 1.90A {Homo sapiens} SCOP: c.2.1.2

Probab=90.84  E-value=0.43  Score=36.52  Aligned_cols=32  Identities=19%  Similarity=0.130  Sum_probs=28.5

Q ss_pred             CCcceEEeeCCCHHHHHHHHhc-------CcEEEecCCC
Q psy12849         30 RTNRTTVVNTINESSILIMAKK-------CRVILNCVGP   61 (138)
Q Consensus        30 ~~~~~~~~D~~d~~~L~~~~~~-------~dvVIn~~GP   61 (138)
                      .++.++.+|+.|++++.+++++       .|+|||++|.
T Consensus        72 ~~~~~~~~D~~~~~~v~~~~~~~~~~~g~id~li~~Ag~  110 (303)
T 1yxm_A           72 ARVIPIQCNIRNEEEVNNLVKSTLDTFGKINFLVNNGGG  110 (303)
T ss_dssp             CCEEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred             ccEEEEecCCCCHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence            4688999999999999999885       8999999994

>4e4y_A Short chain dehydrogenase family protein; structural genomics, the center for structural genomics of I diseases, csgid, niaid; 1.80A {Francisella tularensis subsp}

Probab=90.84  E-value=0.38  Score=35.82  Aligned_cols=33  Identities=9%  Similarity=0.018  Sum_probs=28.9

Q ss_pred             CCcceEEeeCCCHHHHHHHHh-----cCcEEEecCCCc
Q psy12849         30 RTNRTTVVNTINESSILIMAK-----KCRVILNCVGPY   62 (138)
Q Consensus        30 ~~~~~~~~D~~d~~~L~~~~~-----~~dvVIn~~GPf   62 (138)
                      .++.++.+|+.|++++.++++     +.|++||++|..
T Consensus        44 ~~~~~~~~Dv~~~~~v~~~~~~~~~~~id~lv~nAg~~   81 (244)
T 4e4y_A           44 ENLKFIKADLTKQQDITNVLDIIKNVSFDGIFLNAGIL   81 (244)
T ss_dssp             TTEEEEECCTTCHHHHHHHHHHTTTCCEEEEEECCCCC
T ss_pred             ccceEEecCcCCHHHHHHHHHHHHhCCCCEEEECCccC
Confidence            456889999999999999997     679999999953

>3osu_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, csgid, center for structural genomics O infectious diseases; 1.90A {Staphylococcus aureus subsp} SCOP: c.2.1.0 PDB: 3sj7_A*

Probab=90.82  E-value=0.25  Score=36.93  Aligned_cols=33  Identities=18%  Similarity=0.180  Sum_probs=29.1

Q ss_pred             CCcceEEeeCCCHHHHHHHHh-------cCcEEEecCCCc
Q psy12849         30 RTNRTTVVNTINESSILIMAK-------KCRVILNCVGPY   62 (138)
Q Consensus        30 ~~~~~~~~D~~d~~~L~~~~~-------~~dvVIn~~GPf   62 (138)
                      .++.++++|+.|++++.++++       +.|++||++|..
T Consensus        54 ~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~id~lv~nAg~~   93 (246)
T 3osu_A           54 VDSFAIQANVADADEVKAMIKEVVSQFGSLDVLVNNAGIT   93 (246)
T ss_dssp             SCEEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEECCCCC
T ss_pred             CcEEEEEccCCCHHHHHHHHHHHHHHcCCCCEEEECCCCC
Confidence            367889999999999999998       679999999964

>3uuw_A Putative oxidoreductase with NAD(P)-binding rossm domain; structural genomics, center for structural genomics of infec diseases, csgid; HET: 1PE PGE; 1.63A {Clostridium difficile}

Probab=90.82  E-value=1.1  Score=34.60  Aligned_cols=70  Identities=16%  Similarity=0.120  Sum_probs=48.1

Q ss_pred             HHHHHhcCcEEEecCCCccchhHHHHHHHHHcCCCeee---CCCChHHHHHHHHHhHHHHHhCCCEEEeCCCCccchHh
Q psy12849         45 ILIMAKKCRVILNCVGPYTWYGEAVVKACIEAKTHHVD---ITGEPYFMEYMQYEYNTRAQESEVCVVSACGIETLPID  120 (138)
Q Consensus        45 L~~~~~~~dvVIn~~GPf~~~~~~v~~Aci~~g~hYvD---isge~~~~~~~~~~~~~~A~~~gv~iv~~~G~d~~p~d  120 (138)
                      +.+++++.|+|+-|+ |-..+ .+++..|+++|.|.+=   ++-...-.+    ++-+.|+++|+.+..+.-+-..|.-
T Consensus        60 ~~~ll~~~D~V~i~t-p~~~h-~~~~~~al~~gk~vl~EKP~~~~~~~~~----~l~~~a~~~g~~~~v~~~~r~~p~~  132 (308)
T 3uuw_A           60 IESLAKKCDCIFLHS-STETH-YEIIKILLNLGVHVYVDKPLASTVSQGE----ELIELSTKKNLNLMVGFNRRFCPMY  132 (308)
T ss_dssp             HHHHHTTCSEEEECC-CGGGH-HHHHHHHHHTTCEEEECSSSSSSHHHHH----HHHHHHHHHTCCEEECCGGGGCHHH
T ss_pred             HHHHHhcCCEEEEeC-CcHhH-HHHHHHHHHCCCcEEEcCCCCCCHHHHH----HHHHHHHHcCCEEEEeeccccCHHH
Confidence            455566899999999 55555 4788999999999762   344433333    4446788899988777655445543

>3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A*

Probab=90.79  E-value=0.56  Score=37.27  Aligned_cols=52  Identities=15%  Similarity=0.212  Sum_probs=39.4

Q ss_pred             CcceEEeeCCCHHHHHHHH-----------hcCcEEEecCCCccchhHHHHHHHHHcCCCeeeC
Q psy12849         31 TNRTTVVNTINESSILIMA-----------KKCRVILNCVGPYTWYGEAVVKACIEAKTHHVDI   83 (138)
Q Consensus        31 ~~~~~~~D~~d~~~L~~~~-----------~~~dvVIn~~GPf~~~~~~v~~Aci~~g~hYvDi   83 (138)
                      +++....++++.+.+..++           +++|+||+|..-|.. -..+-++|.+.|+++|+.
T Consensus       106 ~v~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~DlVid~~Dn~~~-R~~in~~c~~~~~Pli~~  168 (292)
T 3h8v_A          106 LFEVHNYNITTVENFQHFMDRISNGGLEEGKPVDLVLSCVDNFEA-RMTINTACNELGQTWMES  168 (292)
T ss_dssp             EEEEECCCTTSHHHHHHHHHHHHHBSSSTTBCCSEEEECCSSHHH-HHHHHHHHHHHTCCEEEE
T ss_pred             EEEEecccCCcHHHHHHHhhhhcccccccCCCCCEEEECCcchhh-hhHHHHHHHHhCCCEEEe
Confidence            3444455666667777776           689999999987653 357899999999999874

>1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5

Probab=90.78  E-value=0.056  Score=41.89  Aligned_cols=74  Identities=12%  Similarity=0.011  Sum_probs=46.4

Q ss_pred             hcCcEEEecCCCccchh-HHHHHHHHHcCCCeeeCCCChHHHHHHHHHhHHHHHhCCCE-EEeCCCCccchHhHHHHHHH
Q psy12849         50 KKCRVILNCVGPYTWYG-EAVVKACIEAKTHHVDITGEPYFMEYMQYEYNTRAQESEVC-VVSACGIETLPIDMGVLMLQ  127 (138)
Q Consensus        50 ~~~dvVIn~~GPf~~~~-~~v~~Aci~~g~hYvDisge~~~~~~~~~~~~~~A~~~gv~-iv~~~G~d~~p~dl~~~~~~  127 (138)
                      .++|+||||+|...... .++-...+..|..++|+...+.-+     .+..+|+++|.. +++|.       .++.....
T Consensus       179 ~~~DivVn~t~~~~~~~~~~i~~~~l~~~~~v~D~~y~p~~t-----~~~~~a~~~G~~~~~~G~-------~mLv~Q~~  246 (271)
T 1nyt_A          179 HEFDLIINATSSGISGDIPAIPSSLIHPGIYCYDMFYQKGKT-----PFLAWCEQRGSKRNADGL-------GMLVAQAA  246 (271)
T ss_dssp             CCCSEEEECCSCGGGTCCCCCCGGGCCTTCEEEESCCCSSCC-----HHHHHHHHTTCCEEECTH-------HHHHHHHH
T ss_pred             CCCCEEEECCCCCCCCCCCCCCHHHcCCCCEEEEeccCCcCC-----HHHHHHHHcCCCeecCCH-------HHHHHHHH
Confidence            47999999997543210 012233456789999998764332     344678899988 77663       35555556


Q ss_pred             HHhhhhcC
Q psy12849        128 DSFEGHSG  135 (138)
Q Consensus       128 ~~~~~~~~  135 (138)
                      .+|+.-++
T Consensus       247 ~af~~w~g  254 (271)
T 1nyt_A          247 HAFLLWHG  254 (271)
T ss_dssp             HHHHHHHS
T ss_pred             HHHHHHhC
Confidence            65554433

>3s55_A Putative short-chain dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 2.10A {Mycobacterium abscessus} SCOP: c.2.1.0

Probab=90.78  E-value=0.26  Score=37.53  Aligned_cols=33  Identities=9%  Similarity=0.123  Sum_probs=29.3

Q ss_pred             CCcceEEeeCCCHHHHHHHHh-------cCcEEEecCCCc
Q psy12849         30 RTNRTTVVNTINESSILIMAK-------KCRVILNCVGPY   62 (138)
Q Consensus        30 ~~~~~~~~D~~d~~~L~~~~~-------~~dvVIn~~GPf   62 (138)
                      .++.++++|+.|++++.++++       +.|++||++|..
T Consensus        71 ~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~id~lv~nAg~~  110 (281)
T 3s55_A           71 RRCISAKVDVKDRAALESFVAEAEDTLGGIDIAITNAGIS  110 (281)
T ss_dssp             CCEEEEECCTTCHHHHHHHHHHHHHHHTCCCEEEECCCCC
T ss_pred             CeEEEEeCCCCCHHHHHHHHHHHHHhcCCCCEEEECCCCC
Confidence            467889999999999999988       689999999964

>2hrz_A AGR_C_4963P, nucleoside-diphosphate-sugar epimerase; agrobacterium tumefa structural genomics, PSI-2, protein structure initiative; 1.85A {Agrobacterium tumefaciens}

Probab=90.76  E-value=0.14  Score=39.65  Aligned_cols=47  Identities=9%  Similarity=-0.033  Sum_probs=37.6

Q ss_pred             CcceEEeeCCCHHHHHHHHh-cCcEEEecCCCccch---------------hHHHHHHHHHcC
Q psy12849         31 TNRTTVVNTINESSILIMAK-KCRVILNCVGPYTWY---------------GEAVVKACIEAK   77 (138)
Q Consensus        31 ~~~~~~~D~~d~~~L~~~~~-~~dvVIn~~GPf~~~---------------~~~v~~Aci~~g   77 (138)
                      ++.++.+|+.|++++.++++ ++|+|||++|+....               ...++++|.+.+
T Consensus        65 ~~~~~~~Dl~d~~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~nv~g~~~l~~~~~~~~  127 (342)
T 2hrz_A           65 AVDARAADLSAPGEAEKLVEARPDVIFHLAAIVSGEAELDFDKGYRINLDGTRYLFDAIRIAN  127 (342)
T ss_dssp             EEEEEECCTTSTTHHHHHHHTCCSEEEECCCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHHH
T ss_pred             ceeEEEcCCCCHHHHHHHHhcCCCEEEECCccCcccccccHHHHHHHHHHHHHHHHHHHHhcc
Confidence            46788999999999999995 899999999976421               136788888765

>3ehe_A UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC, ST genomics, protein structure initiative, NEW YORK SGX resear for structural genomics; HET: NAD; 1.87A {Archaeoglobus fulgidus} SCOP: c.2.1.0

Probab=90.76  E-value=0.18  Score=38.66  Aligned_cols=54  Identities=11%  Similarity=-0.025  Sum_probs=41.1

Q ss_pred             CCcceEEeeCCCHHHHHHHHhcCcEEEecCCCccc----------------hhHHHHHHHHHcCC-CeeeCC
Q psy12849         30 RTNRTTVVNTINESSILIMAKKCRVILNCVGPYTW----------------YGEAVVKACIEAKT-HHVDIT   84 (138)
Q Consensus        30 ~~~~~~~~D~~d~~~L~~~~~~~dvVIn~~GPf~~----------------~~~~v~~Aci~~g~-hYvDis   84 (138)
                      ..+.++.+|+.| +++.++++++|+|||++|+...                -...++++|.+.|+ ++|=+|
T Consensus        43 ~~~~~~~~Dl~~-~~~~~~~~~~d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~~iv~~S  113 (313)
T 3ehe_A           43 EAARLVKADLAA-DDIKDYLKGAEEVWHIAANPDVRIGAENPDEIYRNNVLATYRLLEAMRKAGVSRIVFTS  113 (313)
T ss_dssp             TTEEEECCCTTT-SCCHHHHTTCSEEEECCCCCCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEC
T ss_pred             CCcEEEECcCCh-HHHHHHhcCCCEEEECCCCCChhhhhhCHHHHHHHHHHHHHHHHHHHHHcCCCeEEEeC
Confidence            457889999999 8999999999999999985321                11357889998886 455443

>2bgk_A Rhizome secoisolariciresinol dehydrogenase; oxidoreductase; 1.6A {Podophyllum peltatum} SCOP: c.2.1.2 PDB: 2bgl_A* 2bgm_A*

Probab=90.67  E-value=0.23  Score=37.32  Aligned_cols=32  Identities=9%  Similarity=0.168  Sum_probs=28.8

Q ss_pred             CcceEEeeCCCHHHHHHHHh-------cCcEEEecCCCc
Q psy12849         31 TNRTTVVNTINESSILIMAK-------KCRVILNCVGPY   62 (138)
Q Consensus        31 ~~~~~~~D~~d~~~L~~~~~-------~~dvVIn~~GPf   62 (138)
                      ++.++.+|+.|++++.++++       +.|+|||++|..
T Consensus        65 ~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~li~~Ag~~  103 (278)
T 2bgk_A           65 VISFVHCDVTKDEDVRNLVDTTIAKHGKLDIMFGNVGVL  103 (278)
T ss_dssp             TEEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEECCCCC
T ss_pred             ceEEEECCCCCHHHHHHHHHHHHHHcCCCCEEEECCccc
Confidence            68899999999999999988       689999999854

>2pd6_A Estradiol 17-beta-dehydrogenase 8; short-chain dehydrogenase/reductase, steroid metabolism, LIP metabolism, structural genomics; HET: NAD; 2.00A {Homo sapiens}

Probab=90.67  E-value=0.19  Score=37.51  Aligned_cols=33  Identities=9%  Similarity=0.226  Sum_probs=28.4

Q ss_pred             CCcceEEeeCCCHHHHHHHHhcC--------cEEEecCCCc
Q psy12849         30 RTNRTTVVNTINESSILIMAKKC--------RVILNCVGPY   62 (138)
Q Consensus        30 ~~~~~~~~D~~d~~~L~~~~~~~--------dvVIn~~GPf   62 (138)
                      .++.++.+|+.|++++.+++++.        |+|||++|..
T Consensus        63 ~~~~~~~~D~~~~~~~~~~~~~~~~~~g~i~d~vi~~Ag~~  103 (264)
T 2pd6_A           63 GNHAAFQADVSEARAARCLLEQVQACFSRPPSVVVSCAGIT  103 (264)
T ss_dssp             -CCEEEECCTTSHHHHHHHHHHHHHHHSSCCSEEEECCCCC
T ss_pred             cceEEEEecCCCHHHHHHHHHHHHHHhCCCCeEEEECCCcC
Confidence            46788999999999999998875        9999999854

>3m1a_A Putative dehydrogenase; short, PSI, MCSG, structural genomics, midwest center for structural genomics, protein structure initiative; 2.00A {Streptomyces avermitilis}

Probab=90.63  E-value=0.25  Score=37.55  Aligned_cols=33  Identities=15%  Similarity=0.268  Sum_probs=29.3

Q ss_pred             CCcceEEeeCCCHHHHHHHHh-------cCcEEEecCCCc
Q psy12849         30 RTNRTTVVNTINESSILIMAK-------KCRVILNCVGPY   62 (138)
Q Consensus        30 ~~~~~~~~D~~d~~~L~~~~~-------~~dvVIn~~GPf   62 (138)
                      .++.++.+|+.|++++.++++       +.|+|||++|..
T Consensus        51 ~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~id~lv~~Ag~~   90 (281)
T 3m1a_A           51 DRAEAISLDVTDGERIDVVAADVLARYGRVDVLVNNAGRT   90 (281)
T ss_dssp             TTEEEEECCTTCHHHHHHHHHHHHHHHSCCSEEEECCCCE
T ss_pred             CCceEEEeeCCCHHHHHHHHHHHHHhCCCCCEEEECCCcC
Confidence            468899999999999999988       679999999964

>1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia aquatica} SCOP: c.2.1.2

Probab=90.59  E-value=0.25  Score=37.36  Aligned_cols=33  Identities=18%  Similarity=0.152  Sum_probs=28.5

Q ss_pred             CCcceEEeeCCCHHHHHHHHh-------cCcEEEecCCCc
Q psy12849         30 RTNRTTVVNTINESSILIMAK-------KCRVILNCVGPY   62 (138)
Q Consensus        30 ~~~~~~~~D~~d~~~L~~~~~-------~~dvVIn~~GPf   62 (138)
                      .++.++.+|+.|++++.++++       +.|++||++|..
T Consensus        64 ~~~~~~~~D~~~~~~v~~~~~~~~~~~g~id~lv~nAg~~  103 (267)
T 1iy8_A           64 AEVLTTVADVSDEAQVEAYVTATTERFGRIDGFFNNAGIE  103 (267)
T ss_dssp             CCEEEEECCTTSHHHHHHHHHHHHHHHSCCSEEEECCCCC
T ss_pred             ceEEEEEccCCCHHHHHHHHHHHHHHcCCCCEEEECCCcC
Confidence            467889999999999999988       579999999853

>3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics, PSI-2, dehydrogenase, protein structure initiative; 2.30A {Oenococcus oeni psu-1}

Probab=90.59  E-value=0.34  Score=36.77  Aligned_cols=33  Identities=18%  Similarity=0.187  Sum_probs=28.8

Q ss_pred             CCcceEEeeCCCHHHHHHHHh-------cCcEEEecCCCc
Q psy12849         30 RTNRTTVVNTINESSILIMAK-------KCRVILNCVGPY   62 (138)
Q Consensus        30 ~~~~~~~~D~~d~~~L~~~~~-------~~dvVIn~~GPf   62 (138)
                      .++.++.+|+.|++++.++++       +.|++||++|..
T Consensus        63 ~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~lvnnAg~~  102 (262)
T 3ksu_A           63 AKVALYQSDLSNEEEVAKLFDFAEKEFGKVDIAINTVGKV  102 (262)
T ss_dssp             CEEEEEECCCCSHHHHHHHHHHHHHHHCSEEEEEECCCCC
T ss_pred             CcEEEEECCCCCHHHHHHHHHHHHHHcCCCCEEEECCCCC
Confidence            467889999999999999988       579999999943

>3gdo_A Uncharacterized oxidoreductase YVAA; structural genomics, putative oxidoreductase YVAA, oxidoredu PSI-2, protein structure initiative; 2.03A {Bacillus subtilis subsp} PDB: 3gfg_A

Probab=90.53  E-value=1  Score=35.87  Aligned_cols=73  Identities=16%  Similarity=0.076  Sum_probs=49.5

Q ss_pred             HHHHHh--cCcEEEecCCCccchhHHHHHHHHHcCCCeee---CCCChHHHHHHHHHhHHHHHhCCCEEEeCCCCccchH
Q psy12849         45 ILIMAK--KCRVILNCVGPYTWYGEAVVKACIEAKTHHVD---ITGEPYFMEYMQYEYNTRAQESEVCVVSACGIETLPI  119 (138)
Q Consensus        45 L~~~~~--~~dvVIn~~GPf~~~~~~v~~Aci~~g~hYvD---isge~~~~~~~~~~~~~~A~~~gv~iv~~~G~d~~p~  119 (138)
                      +.++++  +.|+|+-|. |-..+ .+++..|+++|.|.+-   ++-...-.+    ++-+.|+++|+.+..+.-+-..|.
T Consensus        57 ~~~ll~~~~vD~V~i~t-p~~~H-~~~~~~al~aGkhVl~EKPla~~~~e~~----~l~~~a~~~g~~~~v~~~~r~~p~  130 (358)
T 3gdo_A           57 LEEITNDPAIELVIVTT-PSGLH-YEHTMACIQAGKHVVMEKPMTATAEEGE----TLKRAADEKGVLLSVYHNRRWDND  130 (358)
T ss_dssp             THHHHTCTTCCEEEECS-CTTTH-HHHHHHHHHTTCEEEEESSCCSSHHHHH----HHHHHHHHHTCCEEEECGGGGSHH
T ss_pred             HHHHhcCCCCCEEEEcC-CcHHH-HHHHHHHHHcCCeEEEecCCcCCHHHHH----HHHHHHHHcCCeEEEeeecccCHH
Confidence            455666  689999999 54555 4789999999999875   334433333    344678889998877655444554


Q ss_pred             hHHH
Q psy12849        120 DMGV  123 (138)
Q Consensus       120 dl~~  123 (138)
                      -..+
T Consensus       131 ~~~~  134 (358)
T 3gdo_A          131 FLTI  134 (358)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            4433

>3rc1_A Sugar 3-ketoreductase; sugar biosynthesis, TDP binding, NADP binding binding protein; HET: TLO NAP; 1.71A {Actinomadura kijaniata} PDB: 3rbv_A* 3rc2_A* 3rcb_A* 3rc7_A* 3rc9_A*

Probab=90.50  E-value=1.5  Score=34.71  Aligned_cols=75  Identities=12%  Similarity=0.073  Sum_probs=51.8

Q ss_pred             HHHHHh--cCcEEEecCCCccchhHHHHHHHHHcCCCeee---CCCChHHHHHHHHHhHHHHHhCCCEEEeCCCCccchH
Q psy12849         45 ILIMAK--KCRVILNCVGPYTWYGEAVVKACIEAKTHHVD---ITGEPYFMEYMQYEYNTRAQESEVCVVSACGIETLPI  119 (138)
Q Consensus        45 L~~~~~--~~dvVIn~~GPf~~~~~~v~~Aci~~g~hYvD---isge~~~~~~~~~~~~~~A~~~gv~iv~~~G~d~~p~  119 (138)
                      +.++++  +.|+|+-|. |-..+ ..+++.|+++|.|.+=   ++-...-.+    ++-+.|+++|+.+..+.-+-..|.
T Consensus        81 ~~~ll~~~~~D~V~i~t-p~~~h-~~~~~~al~aGk~Vl~EKP~a~~~~ea~----~l~~~a~~~g~~~~v~~~~R~~p~  154 (350)
T 3rc1_A           81 YPALLERDDVDAVYVPL-PAVLH-AEWIDRALRAGKHVLAEKPLTTDRPQAE----RLFAVARERGLLLMENFMFLHHPQ  154 (350)
T ss_dssp             HHHHHTCTTCSEEEECC-CGGGH-HHHHHHHHHTTCEEEEESSSCSSHHHHH----HHHHHHHHTTCCEEEECGGGGCTH
T ss_pred             HHHHhcCCCCCEEEECC-CcHHH-HHHHHHHHHCCCcEEEeCCCCCCHHHHH----HHHHHHHHhCCEEEEEecccCCHH
Confidence            455665  589999999 55555 4789999999999763   444444443    444778999999987765555665


Q ss_pred             hHHHHH
Q psy12849        120 DMGVLM  125 (138)
Q Consensus       120 dl~~~~  125 (138)
                      -..+..
T Consensus       155 ~~~~k~  160 (350)
T 3rc1_A          155 HRQVAD  160 (350)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            554443

>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis}

Probab=90.49  E-value=0.36  Score=36.30  Aligned_cols=33  Identities=12%  Similarity=0.168  Sum_probs=29.0

Q ss_pred             CCcceEEeeCCCHHHHHHHHh-------cCcEEEecCCCc
Q psy12849         30 RTNRTTVVNTINESSILIMAK-------KCRVILNCVGPY   62 (138)
Q Consensus        30 ~~~~~~~~D~~d~~~L~~~~~-------~~dvVIn~~GPf   62 (138)
                      .++.++.+|+.|++++.++++       +.|++||++|..
T Consensus        73 ~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~id~li~~Ag~~  112 (266)
T 3o38_A           73 GRVEAVVCDVTSTEAVDALITQTVEKAGRLDVLVNNAGLG  112 (266)
T ss_dssp             SCEEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEECCCCC
T ss_pred             CceEEEEeCCCCHHHHHHHHHHHHHHhCCCcEEEECCCcC
Confidence            578999999999999999987       459999999953

>2dtx_A Glucose 1-dehydrogenase related protein; rossmann fold, oxidoreductase; HET: BMA; 1.60A {Thermoplasma acidophilum} PDB: 2dtd_A* 2dte_A* 2zk7_A

Probab=90.49  E-value=0.3  Score=37.12  Aligned_cols=32  Identities=13%  Similarity=0.105  Sum_probs=28.3

Q ss_pred             CcceEEeeCCCHHHHHHHHh-------cCcEEEecCCCc
Q psy12849         31 TNRTTVVNTINESSILIMAK-------KCRVILNCVGPY   62 (138)
Q Consensus        31 ~~~~~~~D~~d~~~L~~~~~-------~~dvVIn~~GPf   62 (138)
                      ++.++.+|+.|++++.++++       +.|++||++|..
T Consensus        47 ~~~~~~~Dl~~~~~v~~~~~~~~~~~g~iD~lv~~Ag~~   85 (264)
T 2dtx_A           47 KYDHIECDVTNPDQVKASIDHIFKEYGSISVLVNNAGIE   85 (264)
T ss_dssp             SSEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEECCCCC
T ss_pred             ceEEEEecCCCHHHHHHHHHHHHHHcCCCCEEEECCCCC
Confidence            57889999999999999888       589999999954

>1zk4_A R-specific alcohol dehydrogenase; short chain reductases/dehydrogenases, magnesium dependence, oxidoreductase; HET: NAP; 1.00A {Lactobacillus brevis} SCOP: c.2.1.2 PDB: 1nxq_A* 1zjy_A* 1zjz_A* 1zk0_A* 1zk1_A* 1zk2_A 1zk3_A

Probab=90.48  E-value=0.26  Score=36.50  Aligned_cols=33  Identities=9%  Similarity=0.031  Sum_probs=29.0

Q ss_pred             CCcceEEeeCCCHHHHHHHHhc-------CcEEEecCCCc
Q psy12849         30 RTNRTTVVNTINESSILIMAKK-------CRVILNCVGPY   62 (138)
Q Consensus        30 ~~~~~~~~D~~d~~~L~~~~~~-------~dvVIn~~GPf   62 (138)
                      .++.++.+|+.|++++.+++++       .|+|||++|..
T Consensus        54 ~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~li~~Ag~~   93 (251)
T 1zk4_A           54 DQIQFFQHDSSDEDGWTKLFDATEKAFGPVSTLVNNAGIA   93 (251)
T ss_dssp             TTEEEEECCTTCHHHHHHHHHHHHHHHSSCCEEEECCCCC
T ss_pred             CceEEEECCCCCHHHHHHHHHHHHHHhCCCCEEEECCCCC
Confidence            4688999999999999998885       89999999854

>3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis}

Probab=90.46  E-value=0.27  Score=37.17  Aligned_cols=33  Identities=21%  Similarity=0.124  Sum_probs=29.1

Q ss_pred             CCcceEEeeCCCHHHHHHHHh-------cCcEEEecCCCc
Q psy12849         30 RTNRTTVVNTINESSILIMAK-------KCRVILNCVGPY   62 (138)
Q Consensus        30 ~~~~~~~~D~~d~~~L~~~~~-------~~dvVIn~~GPf   62 (138)
                      .++.++.+|+.|++++.++++       +.|++||++|-.
T Consensus        61 ~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~id~lv~nAg~~  100 (256)
T 3gaf_A           61 GKAIGLECNVTDEQHREAVIKAALDQFGKITVLVNNAGGG  100 (256)
T ss_dssp             CCEEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEECCCCC
T ss_pred             CcEEEEECCCCCHHHHHHHHHHHHHHcCCCCEEEECCCCC
Confidence            467889999999999999988       689999999854

>1z7e_A Protein aRNA; rossmann fold, OB-like fold, hydrolase; HET: ATP UGA; 3.00A {Escherichia coli} SCOP: b.46.1.1 c.2.1.2 c.65.1.1

Probab=90.46  E-value=0.36  Score=41.57  Aligned_cols=53  Identities=19%  Similarity=0.157  Sum_probs=40.6

Q ss_pred             CCcceEEeeCCCHHH-HHHHHhcCcEEEecCCCccc----------------hhHHHHHHHHHcCCCeee
Q psy12849         30 RTNRTTVVNTINESS-ILIMAKKCRVILNCVGPYTW----------------YGEAVVKACIEAKTHHVD   82 (138)
Q Consensus        30 ~~~~~~~~D~~d~~~-L~~~~~~~dvVIn~~GPf~~----------------~~~~v~~Aci~~g~hYvD   82 (138)
                      .++.++..|+.|+++ +.++++++|+||||+|....                -...++++|.+.|.++|=
T Consensus       360 ~~v~~v~~Dl~d~~~~~~~~~~~~D~Vih~Aa~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~~~r~V~  429 (660)
T 1z7e_A          360 PHFHFVEGDISIHSEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRIIF  429 (660)
T ss_dssp             TTEEEEECCTTTCHHHHHHHHHHCSEEEECCCCCCTHHHHHSHHHHHHHHTHHHHHHHHHHHHTTCEEEE
T ss_pred             CceEEEECCCCCcHHHHHHhhcCCCEEEECceecCccccccCHHHHHHhhhHHHHHHHHHHHHhCCEEEE
Confidence            457889999998765 88899999999999986431                123678999988765553

>3asu_A Short-chain dehydrogenase/reductase SDR; SDR family, rossmann-fold, short-chain dehydrogenase/reducta ALLO-threonine dehydrogenase; 1.90A {Escherichia coli} PDB: 3asv_A*

Probab=90.45  E-value=0.26  Score=37.09  Aligned_cols=33  Identities=15%  Similarity=0.148  Sum_probs=28.6

Q ss_pred             CCcceEEeeCCCHHHHHHHHh-------cCcEEEecCCCc
Q psy12849         30 RTNRTTVVNTINESSILIMAK-------KCRVILNCVGPY   62 (138)
Q Consensus        30 ~~~~~~~~D~~d~~~L~~~~~-------~~dvVIn~~GPf   62 (138)
                      .++.++.+|+.|++++.++++       +.|++||++|..
T Consensus        46 ~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iD~lvnnAg~~   85 (248)
T 3asu_A           46 DNLYIAQLDVRNRAAIEEMLASLPAEWCNIDILVNNAGLA   85 (248)
T ss_dssp             TTEEEEECCTTCHHHHHHHHHTSCTTTCCCCEEEECCCCC
T ss_pred             CceEEEEcCCCCHHHHHHHHHHHHHhCCCCCEEEECCCcC
Confidence            367889999999999999988       579999999843

>1sny_A Sniffer CG10964-PA; alpha and beta protein, rossmann fold, dinucleotide binding oxidoreductase; HET: NAP; 1.75A {Drosophila melanogaster} SCOP: c.2.1.2

Probab=90.42  E-value=0.18  Score=37.81  Aligned_cols=33  Identities=12%  Similarity=0.032  Sum_probs=29.0

Q ss_pred             CCcceEEeeCCCHHHHHHHHh---------cCcEEEecCCCc
Q psy12849         30 RTNRTTVVNTINESSILIMAK---------KCRVILNCVGPY   62 (138)
Q Consensus        30 ~~~~~~~~D~~d~~~L~~~~~---------~~dvVIn~~GPf   62 (138)
                      .++.++.+|+.|++++.++++         +.|+|||++|..
T Consensus        72 ~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~~~id~li~~Ag~~  113 (267)
T 1sny_A           72 SNIHILEIDLRNFDAYDKLVADIEGVTKDQGLNVLFNNAGIA  113 (267)
T ss_dssp             TTEEEEECCTTCGGGHHHHHHHHHHHHGGGCCSEEEECCCCC
T ss_pred             CceEEEEecCCChHHHHHHHHHHHHhcCCCCccEEEECCCcC
Confidence            367899999999999999888         799999999954

>3pgx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.85A {Mycobacterium avium} SCOP: c.2.1.0

Probab=90.39  E-value=0.3  Score=37.27  Aligned_cols=34  Identities=15%  Similarity=0.302  Sum_probs=29.6

Q ss_pred             CCcceEEeeCCCHHHHHHHHh-------cCcEEEecCCCcc
Q psy12849         30 RTNRTTVVNTINESSILIMAK-------KCRVILNCVGPYT   63 (138)
Q Consensus        30 ~~~~~~~~D~~d~~~L~~~~~-------~~dvVIn~~GPf~   63 (138)
                      .++.++++|+.|++++.++++       +.|++||++|...
T Consensus        77 ~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~id~lvnnAg~~~  117 (280)
T 3pgx_A           77 RKALTRVLDVRDDAALRELVADGMEQFGRLDVVVANAGVLS  117 (280)
T ss_dssp             CCEEEEECCTTCHHHHHHHHHHHHHHHCCCCEEEECCCCCC
T ss_pred             CeEEEEEcCCCCHHHHHHHHHHHHHHcCCCCEEEECCCCCC
Confidence            467889999999999999987       6899999999653

>3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444}

Probab=90.37  E-value=0.29  Score=38.43  Aligned_cols=31  Identities=10%  Similarity=0.157  Sum_probs=27.6

Q ss_pred             CcceEEeeCCCHHHHHHHHhc-------CcEEEecCCC
Q psy12849         31 TNRTTVVNTINESSILIMAKK-------CRVILNCVGP   61 (138)
Q Consensus        31 ~~~~~~~D~~d~~~L~~~~~~-------~dvVIn~~GP   61 (138)
                      ++.++.+|+.|++++.++++.       .|++||++|.
T Consensus        60 ~~~~~~~Dl~~~~~v~~~~~~~~~~~g~id~lv~nAg~   97 (319)
T 3ioy_A           60 EVMGVQLDVASREGFKMAADEVEARFGPVSILCNNAGV   97 (319)
T ss_dssp             GEEEEECCTTCHHHHHHHHHHHHHHTCCEEEEEECCCC
T ss_pred             eEEEEECCCCCHHHHHHHHHHHHHhCCCCCEEEECCCc
Confidence            678899999999999999874       4999999993

>3kux_A Putative oxidoreductase; oxidoreductase family, csgid, structural genomics, center FO structural genomics of infectious diseases; HET: MSE; 2.75A {Yersinia pestis}

Probab=90.35  E-value=2.1  Score=33.76  Aligned_cols=75  Identities=9%  Similarity=-0.026  Sum_probs=50.2

Q ss_pred             HHHHHHhc--CcEEEecCCCccchhHHHHHHHHHcCCCeee---CCCChHHHHHHHHHhHHHHHhCCCEEEeCCCCccch
Q psy12849         44 SILIMAKK--CRVILNCVGPYTWYGEAVVKACIEAKTHHVD---ITGEPYFMEYMQYEYNTRAQESEVCVVSACGIETLP  118 (138)
Q Consensus        44 ~L~~~~~~--~dvVIn~~GPf~~~~~~v~~Aci~~g~hYvD---isge~~~~~~~~~~~~~~A~~~gv~iv~~~G~d~~p  118 (138)
                      ++.++++.  .|+|+-|. |-..+ .+++..|+++|.|.+=   ++-...-.+    ++-+.|+++|+.+..+.-+-..|
T Consensus        58 ~~~~ll~~~~vD~V~i~t-p~~~H-~~~~~~al~aGkhV~~EKPla~~~~e~~----~l~~~a~~~g~~~~v~~~~r~~p  131 (352)
T 3kux_A           58 DPQMLFNDPSIDLIVIPT-PNDTH-FPLAQSALAAGKHVVVDKPFTVTLSQAN----ALKEHADDAGLLLSVFHNRRWDS  131 (352)
T ss_dssp             CHHHHHHCSSCCEEEECS-CTTTH-HHHHHHHHHTTCEEEECSSCCSCHHHHH----HHHHHHHHTTCCEEECCGGGGCH
T ss_pred             CHHHHhcCCCCCEEEEeC-ChHHH-HHHHHHHHHCCCcEEEECCCcCCHHHHH----HHHHHHHHcCCeEEEEeecccCH
Confidence            35667765  89999999 65556 4789999999998763   233333233    44577899999887765544455


Q ss_pred             HhHHHH
Q psy12849        119 IDMGVL  124 (138)
Q Consensus       119 ~dl~~~  124 (138)
                      .-..+.
T Consensus       132 ~~~~~~  137 (352)
T 3kux_A          132 DFLTLK  137 (352)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            544443

>2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A*

Probab=90.34  E-value=0.28  Score=36.78  Aligned_cols=33  Identities=6%  Similarity=0.094  Sum_probs=28.6

Q ss_pred             CCcceEEeeCCCHHHHHHHHh-------cCcEEEecCCCc
Q psy12849         30 RTNRTTVVNTINESSILIMAK-------KCRVILNCVGPY   62 (138)
Q Consensus        30 ~~~~~~~~D~~d~~~L~~~~~-------~~dvVIn~~GPf   62 (138)
                      .++.++.+|+.|++++.++++       +.|++||++|..
T Consensus        56 ~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~id~lv~nAg~~   95 (247)
T 2jah_A           56 AKVHVLELDVADRQGVDAAVASTVEALGGLDILVNNAGIM   95 (247)
T ss_dssp             CCEEEEECCTTCHHHHHHHHHHHHHHHSCCSEEEECCCCC
T ss_pred             CcEEEEECCCCCHHHHHHHHHHHHHHcCCCCEEEECCCCC
Confidence            367889999999999998887       689999999853

>1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR, hydroxysteroid dehydrogenase, structural genomics, PSI; HET: NAD; 1.80A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1nfq_A* 1nfr_A*

Probab=90.32  E-value=0.27  Score=37.26  Aligned_cols=32  Identities=13%  Similarity=0.141  Sum_probs=28.3

Q ss_pred             CcceEEeeCCCHHHHHHHHh-------cCcEEEecCCCc
Q psy12849         31 TNRTTVVNTINESSILIMAK-------KCRVILNCVGPY   62 (138)
Q Consensus        31 ~~~~~~~D~~d~~~L~~~~~-------~~dvVIn~~GPf   62 (138)
                      ++.++.+|+.|++++.++++       +.|++||++|..
T Consensus        54 ~~~~~~~D~~~~~~v~~~~~~~~~~~g~iD~lv~~Ag~~   92 (260)
T 1nff_A           54 AARYVHLDVTQPAQWKAAVDTAVTAFGGLHVLVNNAGIL   92 (260)
T ss_dssp             GEEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEECCCCC
T ss_pred             CceEEEecCCCHHHHHHHHHHHHHHcCCCCEEEECCCCC
Confidence            36788999999999999998       799999999954

>3oid_A Enoyl-[acyl-carrier-protein] reductase [NADPH]; fatty acid synthesis, enoyl-ACP reductases, FABL, rossmann-L NADPH binding, oxidoreductase; HET: TCL NDP; 1.80A {Bacillus subtilis} PDB: 3oic_A*

Probab=90.32  E-value=0.2  Score=38.05  Aligned_cols=32  Identities=16%  Similarity=0.052  Sum_probs=28.2

Q ss_pred             CCcceEEeeCCCHHHHHHHHhcC-------cEEEecCCC
Q psy12849         30 RTNRTTVVNTINESSILIMAKKC-------RVILNCVGP   61 (138)
Q Consensus        30 ~~~~~~~~D~~d~~~L~~~~~~~-------dvVIn~~GP   61 (138)
                      .++.++++|+.|++++.+++++.       |++||++|.
T Consensus        54 ~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~id~lv~nAg~   92 (258)
T 3oid_A           54 VKVLVVKANVGQPAKIKEMFQQIDETFGRLDVFVNNAAS   92 (258)
T ss_dssp             CCEEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred             CcEEEEEcCCCCHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence            46889999999999999998864       999999984

>3ezy_A Dehydrogenase; structural genomics, unknown function, PSI-2, protein structure initiative; 2.04A {Thermotoga maritima}

Probab=90.31  E-value=1.4  Score=34.69  Aligned_cols=74  Identities=12%  Similarity=0.105  Sum_probs=50.9

Q ss_pred             HHHHHh--cCcEEEecCCCccchhHHHHHHHHHcCCCee-e--CCCChHHHHHHHHHhHHHHHhCCCEEEeCCCCccchH
Q psy12849         45 ILIMAK--KCRVILNCVGPYTWYGEAVVKACIEAKTHHV-D--ITGEPYFMEYMQYEYNTRAQESEVCVVSACGIETLPI  119 (138)
Q Consensus        45 L~~~~~--~~dvVIn~~GPf~~~~~~v~~Aci~~g~hYv-D--isge~~~~~~~~~~~~~~A~~~gv~iv~~~G~d~~p~  119 (138)
                      +.++++  ++|+|+-|+ |-..+ .+++..|+++|.|.+ +  ++-...-.+    ++-+.|+++|+.+..+.-+-..|.
T Consensus        56 ~~~ll~~~~~D~V~i~t-p~~~h-~~~~~~al~~gk~v~~EKP~~~~~~e~~----~l~~~a~~~g~~~~v~~~~R~~p~  129 (344)
T 3ezy_A           56 PHELIEDPNVDAVLVCS-STNTH-SELVIACAKAKKHVFCEKPLSLNLADVD----RMIEETKKADVILFTGFNRRFDRN  129 (344)
T ss_dssp             HHHHHHCTTCCEEEECS-CGGGH-HHHHHHHHHTTCEEEEESCSCSCHHHHH----HHHHHHHHHTCCEEEECGGGGCHH
T ss_pred             HHHHhcCCCCCEEEEcC-CCcch-HHHHHHHHhcCCeEEEECCCCCCHHHHH----HHHHHHHHhCCcEEEeecccCCHH
Confidence            455666  789999999 54555 478899999999976 2  233433333    444778889998888776656665


Q ss_pred             hHHHH
Q psy12849        120 DMGVL  124 (138)
Q Consensus       120 dl~~~  124 (138)
                      -..+.
T Consensus       130 ~~~~k  134 (344)
T 3ezy_A          130 FKKLK  134 (344)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            54443

>2ew8_A (S)-1-phenylethanol dehydrogenase; transferase; 2.10A {Azoarcus SP} SCOP: c.2.1.2 PDB: 2ewm_A*

Probab=90.28  E-value=0.31  Score=36.51  Aligned_cols=33  Identities=21%  Similarity=0.432  Sum_probs=28.2

Q ss_pred             CCcceEEeeCCCHHHHHHHHh-------cCcEEEecCCCc
Q psy12849         30 RTNRTTVVNTINESSILIMAK-------KCRVILNCVGPY   62 (138)
Q Consensus        30 ~~~~~~~~D~~d~~~L~~~~~-------~~dvVIn~~GPf   62 (138)
                      .++.++++|+.|++++.++++       +.|++||++|..
T Consensus        54 ~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~id~lv~nAg~~   93 (249)
T 2ew8_A           54 RRVLTVKCDVSQPGDVEAFGKQVISTFGRCDILVNNAGIY   93 (249)
T ss_dssp             CCEEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEECCCCC
T ss_pred             CcEEEEEeecCCHHHHHHHHHHHHHHcCCCCEEEECCCCC
Confidence            367889999999999998875       689999999854

>3db2_A Putative NADPH-dependent oxidoreductase; two domain protein, rossman fold, putative dehydrogenase, ST genomics; 1.70A {Desulfitobacterium hafniense dcb-2}

Probab=90.27  E-value=1.3  Score=34.94  Aligned_cols=74  Identities=11%  Similarity=0.086  Sum_probs=51.5

Q ss_pred             HHHHH--hcCcEEEecCCCccchhHHHHHHHHHcCCCeee---CCCChHHHHHHHHHhHHHHHhCCCEEEeCCCCccchH
Q psy12849         45 ILIMA--KKCRVILNCVGPYTWYGEAVVKACIEAKTHHVD---ITGEPYFMEYMQYEYNTRAQESEVCVVSACGIETLPI  119 (138)
Q Consensus        45 L~~~~--~~~dvVIn~~GPf~~~~~~v~~Aci~~g~hYvD---isge~~~~~~~~~~~~~~A~~~gv~iv~~~G~d~~p~  119 (138)
                      +.+++  .+.|+|+-|..| ..+ ..++..|+++|.|.+=   ++-...-.+    ++-+.|+++|+.+..+.-+-..|.
T Consensus        58 ~~~~l~~~~~D~V~i~tp~-~~h-~~~~~~al~~gk~vl~EKP~~~~~~~~~----~l~~~a~~~~~~~~v~~~~R~~p~  131 (354)
T 3db2_A           58 MEALLAREDVEMVIITVPN-DKH-AEVIEQCARSGKHIYVEKPISVSLDHAQ----RIDQVIKETGVKFLCGHSSRRLGA  131 (354)
T ss_dssp             HHHHHHCSSCCEEEECSCT-TSH-HHHHHHHHHTTCEEEEESSSCSSHHHHH----HHHHHHHHHCCCEEEECGGGGSHH
T ss_pred             HHHHhcCCCCCEEEEeCCh-HHH-HHHHHHHHHcCCEEEEccCCCCCHHHHH----HHHHHHHHcCCeEEEeechhcCHH
Confidence            45666  458999999944 555 4788999999999774   344444443    444678889999988776666665


Q ss_pred             hHHHH
Q psy12849        120 DMGVL  124 (138)
Q Consensus       120 dl~~~  124 (138)
                      -..+.
T Consensus       132 ~~~~k  136 (354)
T 3db2_A          132 LRKMK  136 (354)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            55444

>1hxh_A 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-beta, rossmann fold, short-chain dehydrogenase, oxidoreductase; 1.22A {Comamonas testosteroni} SCOP: c.2.1.2

Probab=90.27  E-value=0.18  Score=37.95  Aligned_cols=33  Identities=12%  Similarity=0.127  Sum_probs=28.3

Q ss_pred             CCcceEEeeCCCHHHHHHHHhc-------CcEEEecCCCc
Q psy12849         30 RTNRTTVVNTINESSILIMAKK-------CRVILNCVGPY   62 (138)
Q Consensus        30 ~~~~~~~~D~~d~~~L~~~~~~-------~dvVIn~~GPf   62 (138)
                      .++.++++|+.|++++.+++++       .|++||++|..
T Consensus        52 ~~~~~~~~D~~~~~~v~~~~~~~~~~~g~id~lv~~Ag~~   91 (253)
T 1hxh_A           52 ERSMFVRHDVSSEADWTLVMAAVQRRLGTLNVLVNNAGIL   91 (253)
T ss_dssp             TTEEEECCCTTCHHHHHHHHHHHHHHHCSCCEEEECCCCC
T ss_pred             CceEEEEccCCCHHHHHHHHHHHHHHcCCCCEEEECCCCC
Confidence            3577899999999999998886       49999999964

>3f4l_A Putative oxidoreductase YHHX; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.00A {Escherichia coli k-12}

Probab=90.24  E-value=1.3  Score=34.96  Aligned_cols=74  Identities=11%  Similarity=-0.013  Sum_probs=50.4

Q ss_pred             HHHHHhc--CcEEEecCCCccchhHHHHHHHHHcCCCeee---CCCChHHHHHHHHHhHHHHHhCCCEEEeCCCCccchH
Q psy12849         45 ILIMAKK--CRVILNCVGPYTWYGEAVVKACIEAKTHHVD---ITGEPYFMEYMQYEYNTRAQESEVCVVSACGIETLPI  119 (138)
Q Consensus        45 L~~~~~~--~dvVIn~~GPf~~~~~~v~~Aci~~g~hYvD---isge~~~~~~~~~~~~~~A~~~gv~iv~~~G~d~~p~  119 (138)
                      +.++++.  .|+|+-|. |-..+ ..++..|+++|.|.+-   ++-...-.+    ++-+.|+++|+.+..+.-+-..|.
T Consensus        57 ~~~ll~~~~~D~V~i~t-p~~~h-~~~~~~al~aGk~Vl~EKP~a~~~~e~~----~l~~~a~~~g~~~~v~~~~r~~p~  130 (345)
T 3f4l_A           57 LDEVLNDPDVKLVVVCT-HADSH-FEYAKRALEAGKNVLVEKPFTPTLAQAK----ELFALAKSKGLTVTPYQNRRFDSC  130 (345)
T ss_dssp             THHHHTCTTEEEEEECS-CGGGH-HHHHHHHHHTTCEEEECSSSCSSHHHHH----HHHHHHHHHTCCEEECCGGGGCHH
T ss_pred             HHHHhcCCCCCEEEEcC-ChHHH-HHHHHHHHHcCCcEEEeCCCCCCHHHHH----HHHHHHHHcCCeEEEEechhcCHH
Confidence            5666765  89999999 65556 4788999999999885   233433333    344678889998877655444554


Q ss_pred             hHHHH
Q psy12849        120 DMGVL  124 (138)
Q Consensus       120 dl~~~  124 (138)
                      -..+.
T Consensus       131 ~~~~~  135 (345)
T 3f4l_A          131 FLTAK  135 (345)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            44443

>2h7i_A Enoyl-[acyl-carrier-protein] reductase [NADH]; oxidoreductase, INHA, enoyl acyl carrier reductase, pyrrolid carboxamide; HET: NAD 566; 1.62A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1p44_A* 1p45_A* 2b35_A* 2b36_A* 2b37_A* 2aq8_A* 2h7l_A* 2h7m_A* 2h7n_A* 2h7p_A* 2nsd_A* 2pr2_A* 2x22_A* 2x23_A* 3fne_A* 3fnf_A* 3fng_A* 3fnh_A* 3oew_A* 2aqh_A* ...

Probab=90.23  E-value=0.24  Score=37.55  Aligned_cols=33  Identities=15%  Similarity=0.176  Sum_probs=28.7

Q ss_pred             CCcceEEeeCCCHHHHHHHHh----------cCcEEEecCCCc
Q psy12849         30 RTNRTTVVNTINESSILIMAK----------KCRVILNCVGPY   62 (138)
Q Consensus        30 ~~~~~~~~D~~d~~~L~~~~~----------~~dvVIn~~GPf   62 (138)
                      .++.++.+|+.|++++.++++          +.|++||++|-.
T Consensus        56 ~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~~~~iD~lv~nAg~~   98 (269)
T 2h7i_A           56 AKAPLLELDVQNEEHLASLAGRVTEAIGAGNKLDGVVHSIGFM   98 (269)
T ss_dssp             SCCCEEECCTTCHHHHHHHHHHHHHHHCTTCCEEEEEECCCCC
T ss_pred             CCceEEEccCCCHHHHHHHHHHHHHHhCCCCCceEEEECCccC
Confidence            367889999999999999988          789999999843

>3gk3_A Acetoacetyl-COA reductase; acetoacetyl-CO reductase, oxidoreductase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=90.18  E-value=0.31  Score=36.93  Aligned_cols=33  Identities=24%  Similarity=0.215  Sum_probs=29.4

Q ss_pred             CCcceEEeeCCCHHHHHHHHh-------cCcEEEecCCCc
Q psy12849         30 RTNRTTVVNTINESSILIMAK-------KCRVILNCVGPY   62 (138)
Q Consensus        30 ~~~~~~~~D~~d~~~L~~~~~-------~~dvVIn~~GPf   62 (138)
                      .++.++.+|+.|++++.++++       +.|++||++|..
T Consensus        75 ~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~id~li~nAg~~  114 (269)
T 3gk3_A           75 RDFKAYAVDVADFESCERCAEKVLADFGKVDVLINNAGIT  114 (269)
T ss_dssp             CCCEEEECCTTCHHHHHHHHHHHHHHHSCCSEEEECCCCC
T ss_pred             CceEEEEecCCCHHHHHHHHHHHHHHcCCCCEEEECCCcC
Confidence            578999999999999999888       689999999854

>3tl3_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 1.85A {Mycobacterium ulcerans}

Probab=90.18  E-value=0.2  Score=37.66  Aligned_cols=33  Identities=18%  Similarity=0.407  Sum_probs=29.4

Q ss_pred             CCcceEEeeCCCHHHHHHHHh------cCcEEEecCCCc
Q psy12849         30 RTNRTTVVNTINESSILIMAK------KCRVILNCVGPY   62 (138)
Q Consensus        30 ~~~~~~~~D~~d~~~L~~~~~------~~dvVIn~~GPf   62 (138)
                      .++.++++|++|++++.++++      +.|++||++|..
T Consensus        52 ~~~~~~~~D~~~~~~v~~~~~~~~~~g~id~lv~nAg~~   90 (257)
T 3tl3_A           52 DRARFAAADVTDEAAVASALDLAETMGTLRIVVNCAGTG   90 (257)
T ss_dssp             TTEEEEECCTTCHHHHHHHHHHHHHHSCEEEEEECGGGS
T ss_pred             CceEEEECCCCCHHHHHHHHHHHHHhCCCCEEEECCCCC
Confidence            467899999999999999988      789999999964

>3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2

Probab=90.17  E-value=0.23  Score=36.93  Aligned_cols=33  Identities=21%  Similarity=0.180  Sum_probs=29.0

Q ss_pred             CCcceEEeeCCCHHHHHHHHhc-------CcEEEecCCCc
Q psy12849         30 RTNRTTVVNTINESSILIMAKK-------CRVILNCVGPY   62 (138)
Q Consensus        30 ~~~~~~~~D~~d~~~L~~~~~~-------~dvVIn~~GPf   62 (138)
                      .++.++.+|+.|++++.++++.       .|++||++|..
T Consensus        54 ~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~li~~Ag~~   93 (247)
T 3lyl_A           54 FKARGLVLNISDIESIQNFFAEIKAENLAIDILVNNAGIT   93 (247)
T ss_dssp             CCEEEEECCTTCHHHHHHHHHHHHHTTCCCSEEEECCCCC
T ss_pred             CceEEEEecCCCHHHHHHHHHHHHHHcCCCCEEEECCCCC
Confidence            4688999999999999999885       59999999965

>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp}

Probab=90.11  E-value=0.24  Score=36.95  Aligned_cols=33  Identities=18%  Similarity=0.183  Sum_probs=29.0

Q ss_pred             CCcceEEeeCCCHHHHHHHHh-------cCcEEEecCCCc
Q psy12849         30 RTNRTTVVNTINESSILIMAK-------KCRVILNCVGPY   62 (138)
Q Consensus        30 ~~~~~~~~D~~d~~~L~~~~~-------~~dvVIn~~GPf   62 (138)
                      .++.++.+|+.|++++.++++       +.|++||++|.+
T Consensus        58 ~~~~~~~~D~~~~~~~~~~~~~~~~~~g~id~li~~Ag~~   97 (253)
T 3qiv_A           58 GTAISVAVDVSDPESAKAMADRTLAEFGGIDYLVNNAAIF   97 (253)
T ss_dssp             CEEEEEECCTTSHHHHHHHHHHHHHHHSCCCEEEECCCCC
T ss_pred             CcEEEEEccCCCHHHHHHHHHHHHHHcCCCCEEEECCCcC
Confidence            467889999999999999988       789999999963

>1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2

Probab=90.08  E-value=0.32  Score=36.90  Aligned_cols=33  Identities=27%  Similarity=0.305  Sum_probs=28.8

Q ss_pred             CCcceEEeeCCCHHHHHHHHh-------cCcEEEecCCCc
Q psy12849         30 RTNRTTVVNTINESSILIMAK-------KCRVILNCVGPY   62 (138)
Q Consensus        30 ~~~~~~~~D~~d~~~L~~~~~-------~~dvVIn~~GPf   62 (138)
                      .++.++.+|+.|++++.++++       +.|+|||++|..
T Consensus        80 ~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~iD~li~~Ag~~  119 (272)
T 1yb1_A           80 AKVHTFVVDCSNREDIYSSAKKVKAEIGDVSILVNNAGVV  119 (272)
T ss_dssp             CCEEEEECCTTCHHHHHHHHHHHHHHTCCCSEEEECCCCC
T ss_pred             CeEEEEEeeCCCHHHHHHHHHHHHHHCCCCcEEEECCCcC
Confidence            367899999999999999887       679999999854

>3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis}

Probab=90.08  E-value=0.33  Score=37.36  Aligned_cols=34  Identities=15%  Similarity=0.176  Sum_probs=29.3

Q ss_pred             CCcceEEeeCCCHHHHHHHHh-------cCcEEEecCCCcc
Q psy12849         30 RTNRTTVVNTINESSILIMAK-------KCRVILNCVGPYT   63 (138)
Q Consensus        30 ~~~~~~~~D~~d~~~L~~~~~-------~~dvVIn~~GPf~   63 (138)
                      .++.++.+|+.|++++.++++       +.|++||++|...
T Consensus        75 ~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~lvnnAg~~~  115 (277)
T 3gvc_A           75 CGAAACRVDVSDEQQIIAMVDACVAAFGGVDKLVANAGVVH  115 (277)
T ss_dssp             SSCEEEECCTTCHHHHHHHHHHHHHHHSSCCEEEECCCCCC
T ss_pred             CcceEEEecCCCHHHHHHHHHHHHHHcCCCCEEEECCCCCC
Confidence            467889999999999999887       5799999999653

>1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga maritima} SCOP: c.2.1.2

Probab=90.06  E-value=0.32  Score=36.99  Aligned_cols=32  Identities=13%  Similarity=0.127  Sum_probs=28.1

Q ss_pred             CcceEEeeCCCHHHHHHHHh-------cCcEEEecCCCc
Q psy12849         31 TNRTTVVNTINESSILIMAK-------KCRVILNCVGPY   62 (138)
Q Consensus        31 ~~~~~~~D~~d~~~L~~~~~-------~~dvVIn~~GPf   62 (138)
                      ++.++.+|+.|++++.++++       +.|++||++|..
T Consensus        72 ~~~~~~~Dl~~~~~v~~~~~~~~~~~g~iD~lvnnAg~~  110 (267)
T 1vl8_A           72 ETMAFRCDVSNYEEVKKLLEAVKEKFGKLDTVVNAAGIN  110 (267)
T ss_dssp             CEEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEECCCCC
T ss_pred             eEEEEEcCCCCHHHHHHHHHHHHHHcCCCCEEEECCCcC
Confidence            57788999999999999887       689999999954

>1edo_A Beta-keto acyl carrier protein reductase; nucleotide fold, rossmann fold, oxidoreductase; HET: NAP; 2.30A {Brassica napus} SCOP: c.2.1.2 PDB: 2cdh_G

Probab=90.06  E-value=0.25  Score=36.44  Aligned_cols=32  Identities=22%  Similarity=0.157  Sum_probs=28.3

Q ss_pred             CcceEEeeCCCHHHHHHHHh-------cCcEEEecCCCc
Q psy12849         31 TNRTTVVNTINESSILIMAK-------KCRVILNCVGPY   62 (138)
Q Consensus        31 ~~~~~~~D~~d~~~L~~~~~-------~~dvVIn~~GPf   62 (138)
                      ++.++.+|+.|++++.++++       +.|+|||++|..
T Consensus        52 ~~~~~~~D~~~~~~~~~~~~~~~~~~g~id~li~~Ag~~   90 (244)
T 1edo_A           52 QAITFGGDVSKEADVEAMMKTAIDAWGTIDVVVNNAGIT   90 (244)
T ss_dssp             EEEEEECCTTSHHHHHHHHHHHHHHSSCCSEEEECCCCC
T ss_pred             cEEEEeCCCCCHHHHHHHHHHHHHHcCCCCEEEECCCCC
Confidence            57788999999999999998       589999999854

>3fhl_A Putative oxidoreductase; NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 1.93A {Bacteroides fragilis nctc 9343}

Probab=90.05  E-value=1.1  Score=35.63  Aligned_cols=74  Identities=14%  Similarity=-0.041  Sum_probs=50.5

Q ss_pred             HHHHHhc--CcEEEecCCCccchhHHHHHHHHHcCCCeee---CCCChHHHHHHHHHhHHHHHhCCCEEEeCCCCccchH
Q psy12849         45 ILIMAKK--CRVILNCVGPYTWYGEAVVKACIEAKTHHVD---ITGEPYFMEYMQYEYNTRAQESEVCVVSACGIETLPI  119 (138)
Q Consensus        45 L~~~~~~--~dvVIn~~GPf~~~~~~v~~Aci~~g~hYvD---isge~~~~~~~~~~~~~~A~~~gv~iv~~~G~d~~p~  119 (138)
                      +.++++.  .|+|+-|. |-..+ .+++..|+++|.|.+=   ++-...-.+    ++-+.|+++|+.+..+.-+-..|.
T Consensus        57 ~~~ll~~~~vD~V~i~t-p~~~H-~~~~~~al~aGkhVl~EKP~a~~~~ea~----~l~~~a~~~g~~~~v~~~~R~~p~  130 (362)
T 3fhl_A           57 FKELTEDPEIDLIVVNT-PDNTH-YEYAGMALEAGKNVVVEKPFTSTTKQGE----ELIALAKKKGLMLSVYQNRRWDAD  130 (362)
T ss_dssp             SHHHHTCTTCCEEEECS-CGGGH-HHHHHHHHHTTCEEEEESSCCSSHHHHH----HHHHHHHHHTCCEEEECGGGGSHH
T ss_pred             HHHHhcCCCCCEEEEeC-ChHHH-HHHHHHHHHCCCeEEEecCCCCCHHHHH----HHHHHHHHcCCEEEEEecceeCHH
Confidence            5666765  89999999 55555 4789999999999874   444444343    344678889998877655444554


Q ss_pred             hHHHH
Q psy12849        120 DMGVL  124 (138)
Q Consensus       120 dl~~~  124 (138)
                      -..+.
T Consensus       131 ~~~~k  135 (362)
T 3fhl_A          131 FLTVR  135 (362)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            44443

>1gee_A Glucose 1-dehydrogenase; short-chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 1.60A {Bacillus megaterium} SCOP: c.2.1.2 PDB: 1rwb_A* 1gco_A* 1g6k_A* 3aus_A 3aut_A* 3auu_A*

Probab=90.04  E-value=0.24  Score=36.92  Aligned_cols=32  Identities=19%  Similarity=0.208  Sum_probs=28.1

Q ss_pred             CcceEEeeCCCHHHHHHHHh-------cCcEEEecCCCc
Q psy12849         31 TNRTTVVNTINESSILIMAK-------KCRVILNCVGPY   62 (138)
Q Consensus        31 ~~~~~~~D~~d~~~L~~~~~-------~~dvVIn~~GPf   62 (138)
                      ++.++.+|+.|++++.++++       +.|+|||++|..
T Consensus        58 ~~~~~~~D~~~~~~~~~~~~~~~~~~g~id~li~~Ag~~   96 (261)
T 1gee_A           58 EAIAVKGDVTVESDVINLVQSAIKEFGKLDVMINNAGLE   96 (261)
T ss_dssp             EEEEEECCTTSHHHHHHHHHHHHHHHSCCCEEEECCCCC
T ss_pred             ceEEEECCCCCHHHHHHHHHHHHHHcCCCCEEEECCCCC
Confidence            56789999999999999988       689999999843

>3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0

Probab=90.02  E-value=0.49  Score=35.86  Aligned_cols=34  Identities=12%  Similarity=0.173  Sum_probs=28.8

Q ss_pred             CCcceEEeeCCCH-HHHHHHHh-------cCcEEEecCCCcc
Q psy12849         30 RTNRTTVVNTINE-SSILIMAK-------KCRVILNCVGPYT   63 (138)
Q Consensus        30 ~~~~~~~~D~~d~-~~L~~~~~-------~~dvVIn~~GPf~   63 (138)
                      .++.++.+|+.|+ +++.++++       +.|++||+||...
T Consensus        62 ~~~~~~~~Dl~~~~~~v~~~~~~~~~~~g~iD~lv~nAg~~~  103 (311)
T 3o26_A           62 ENVVFHQLDVTDPIATMSSLADFIKTHFGKLDILVNNAGVAG  103 (311)
T ss_dssp             CSEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEECCCCCS
T ss_pred             CceEEEEccCCCcHHHHHHHHHHHHHhCCCCCEEEECCcccc
Confidence            5788999999998 88877776       6899999999753

>3i23_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.30A {Enterococcus faecalis} PDB: 3fd8_A* 3hnp_A

Probab=89.98  E-value=1.9  Score=33.99  Aligned_cols=73  Identities=16%  Similarity=0.051  Sum_probs=48.9

Q ss_pred             HHHHHhc--CcEEEecCCCccchhHHHHHHHHHcCCCeee---CCCChHHHHHHHHHhHHHHHhCCCEEEeCCCCccchH
Q psy12849         45 ILIMAKK--CRVILNCVGPYTWYGEAVVKACIEAKTHHVD---ITGEPYFMEYMQYEYNTRAQESEVCVVSACGIETLPI  119 (138)
Q Consensus        45 L~~~~~~--~dvVIn~~GPf~~~~~~v~~Aci~~g~hYvD---isge~~~~~~~~~~~~~~A~~~gv~iv~~~G~d~~p~  119 (138)
                      +.++++.  .|+|+-|. |-..+ .+++..|+++|.|.+=   ++-...-.+    ++-+.|+++|+.+..+.-+-..|.
T Consensus        57 ~~~ll~~~~~D~V~i~t-p~~~h-~~~~~~al~aGk~Vl~EKP~a~~~~e~~----~l~~~a~~~g~~~~v~~~~r~~p~  130 (349)
T 3i23_A           57 LNELLTDPEIELITICT-PAHTH-YDLAKQAILAGKSVIVEKPFCDTLEHAE----ELFALGQEKGVVVMPYQNRRFDGD  130 (349)
T ss_dssp             THHHHSCTTCCEEEECS-CGGGH-HHHHHHHHHTTCEEEECSCSCSSHHHHH----HHHHHHHHTTCCEEECCGGGGCHH
T ss_pred             HHHHhcCCCCCEEEEeC-CcHHH-HHHHHHHHHcCCEEEEECCCcCCHHHHH----HHHHHHHHcCCeEEEEecccCCHH
Confidence            4556665  89999999 55555 4789999999999873   222222222    445778999999877655444554


Q ss_pred             hHHH
Q psy12849        120 DMGV  123 (138)
Q Consensus       120 dl~~  123 (138)
                      -..+
T Consensus       131 ~~~~  134 (349)
T 3i23_A          131 YLAM  134 (349)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            4444

>4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold, oxoacyl-ACP reductase, NADP binding, fatty AC biosynthsis, oxidoreductase; HET: NAP; 2.38A {Synechococcus elongatus} PDB: 4dml_A*

Probab=89.96  E-value=0.33  Score=37.09  Aligned_cols=33  Identities=15%  Similarity=0.146  Sum_probs=29.2

Q ss_pred             CCcceEEeeCCCHHHHHHHHh-------cCcEEEecCCCc
Q psy12849         30 RTNRTTVVNTINESSILIMAK-------KCRVILNCVGPY   62 (138)
Q Consensus        30 ~~~~~~~~D~~d~~~L~~~~~-------~~dvVIn~~GPf   62 (138)
                      .++.++.+|+.|++++.++++       +.|++||++|..
T Consensus        78 ~~~~~~~~D~~d~~~v~~~~~~~~~~~g~id~lv~nAg~~  117 (269)
T 4dmm_A           78 GEAFAVKADVSQESEVEALFAAVIERWGRLDVLVNNAGIT  117 (269)
T ss_dssp             CCEEEEECCTTSHHHHHHHHHHHHHHHSCCCEEEECCCCC
T ss_pred             CcEEEEECCCCCHHHHHHHHHHHHHHcCCCCEEEECCCCC
Confidence            467889999999999999988       679999999965

>2nwq_A Probable short-chain dehydrogenase; oxidoreductase; 2.30A {Pseudomonas aeruginosa}

Probab=89.96  E-value=0.3  Score=37.50  Aligned_cols=33  Identities=9%  Similarity=0.107  Sum_probs=29.1

Q ss_pred             CCcceEEeeCCCHHHHHHHHhcC-------cEEEecCCCc
Q psy12849         30 RTNRTTVVNTINESSILIMAKKC-------RVILNCVGPY   62 (138)
Q Consensus        30 ~~~~~~~~D~~d~~~L~~~~~~~-------dvVIn~~GPf   62 (138)
                      .++.++.+|+.|++++.+++++.       |++||++|..
T Consensus        69 ~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~lvnnAG~~  108 (272)
T 2nwq_A           69 TRVLPLTLDVRDRAAMSAAVDNLPEEFATLRGLINNAGLA  108 (272)
T ss_dssp             SCEEEEECCTTCHHHHHHHHHTCCGGGSSCCEEEECCCCC
T ss_pred             CcEEEEEcCCCCHHHHHHHHHHHHHHhCCCCEEEECCCCC
Confidence            36788999999999999999875       9999999854

>3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: EPE; 1.50A {Mycobacterium paratuberculosis}

Probab=89.92  E-value=0.21  Score=38.31  Aligned_cols=33  Identities=18%  Similarity=0.171  Sum_probs=29.3

Q ss_pred             CCcceEEeeCCCHHHHHHHHhc---CcEEEecCCCc
Q psy12849         30 RTNRTTVVNTINESSILIMAKK---CRVILNCVGPY   62 (138)
Q Consensus        30 ~~~~~~~~D~~d~~~L~~~~~~---~dvVIn~~GPf   62 (138)
                      .++.++++|+.|++++.+++++   .|++||++|.+
T Consensus        62 ~~~~~~~~Dl~d~~~v~~~~~~~~~iD~lv~nAg~~   97 (291)
T 3rd5_A           62 GQVEVRELDLQDLSSVRRFADGVSGADVLINNAGIM   97 (291)
T ss_dssp             SEEEEEECCTTCHHHHHHHHHTCCCEEEEEECCCCC
T ss_pred             CCeeEEEcCCCCHHHHHHHHHhcCCCCEEEECCcCC
Confidence            4688999999999999999995   59999999964

>1hdc_A 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxidoreductase; HET: CBO; 2.20A {Streptomyces exfoliatus} SCOP: c.2.1.2 PDB: 2hsd_A*

Probab=89.91  E-value=0.26  Score=37.12  Aligned_cols=32  Identities=13%  Similarity=0.073  Sum_probs=28.2

Q ss_pred             CcceEEeeCCCHHHHHHHHh-------cCcEEEecCCCc
Q psy12849         31 TNRTTVVNTINESSILIMAK-------KCRVILNCVGPY   62 (138)
Q Consensus        31 ~~~~~~~D~~d~~~L~~~~~-------~~dvVIn~~GPf   62 (138)
                      ++.++.+|+.|++++.++++       +.|++||++|..
T Consensus        52 ~~~~~~~D~~~~~~~~~~~~~~~~~~g~iD~lv~nAg~~   90 (254)
T 1hdc_A           52 AARYQHLDVTIEEDWQRVVAYAREEFGSVDGLVNNAGIS   90 (254)
T ss_dssp             GEEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEECCCCC
T ss_pred             ceeEEEecCCCHHHHHHHHHHHHHHcCCCCEEEECCCCC
Confidence            46788999999999999988       789999999854

>1x1t_A D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, SDR, short chain dehydrogenase, ketone BODY, beta hydroxybutyrate, oxidoreductase; HET: NAD; 1.52A {Pseudomonas fragi} SCOP: c.2.1.2 PDB: 1wmb_A* 2ztl_A* 2ztv_A* 2ztm_A* 2ztu_A* 2yz7_A 2zea_A* 3eew_A* 3vdq_A* 3vdr_A*

Probab=89.89  E-value=0.26  Score=37.15  Aligned_cols=32  Identities=6%  Similarity=0.046  Sum_probs=28.0

Q ss_pred             CcceEEeeCCCHHHHHHHHh-------cCcEEEecCCCc
Q psy12849         31 TNRTTVVNTINESSILIMAK-------KCRVILNCVGPY   62 (138)
Q Consensus        31 ~~~~~~~D~~d~~~L~~~~~-------~~dvVIn~~GPf   62 (138)
                      ++.++.+|+.|++++.++++       +.|++||++|..
T Consensus        56 ~~~~~~~D~~~~~~v~~~~~~~~~~~g~iD~lv~~Ag~~   94 (260)
T 1x1t_A           56 KVLYDGADLSKGEAVRGLVDNAVRQMGRIDILVNNAGIQ   94 (260)
T ss_dssp             CEEEECCCTTSHHHHHHHHHHHHHHHSCCSEEEECCCCC
T ss_pred             cEEEEECCCCCHHHHHHHHHHHHHhcCCCCEEEECCCCC
Confidence            57788999999999999987       589999999853

>3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 3.00A {Sinorhizobium meliloti}

Probab=89.89  E-value=0.28  Score=37.67  Aligned_cols=33  Identities=18%  Similarity=0.130  Sum_probs=29.3

Q ss_pred             CCcceEEeeCCCHHHHHHHHh-------cCcEEEecCCCc
Q psy12849         30 RTNRTTVVNTINESSILIMAK-------KCRVILNCVGPY   62 (138)
Q Consensus        30 ~~~~~~~~D~~d~~~L~~~~~-------~~dvVIn~~GPf   62 (138)
                      .++.++.+|+.|++++.++++       +.|++||++|..
T Consensus        76 ~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~lv~nAg~~  115 (281)
T 3v2h_A           76 GTVLHHPADMTKPSEIADMMAMVADRFGGADILVNNAGVQ  115 (281)
T ss_dssp             SCEEEECCCTTCHHHHHHHHHHHHHHTSSCSEEEECCCCC
T ss_pred             CcEEEEeCCCCCHHHHHHHHHHHHHHCCCCCEEEECCCCC
Confidence            568889999999999999988       679999999964

>3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=89.88  E-value=0.35  Score=36.63  Aligned_cols=33  Identities=9%  Similarity=0.175  Sum_probs=28.8

Q ss_pred             CCcceEEeeCCCHHHHHHHHh-------cCcEEEecCCCc
Q psy12849         30 RTNRTTVVNTINESSILIMAK-------KCRVILNCVGPY   62 (138)
Q Consensus        30 ~~~~~~~~D~~d~~~L~~~~~-------~~dvVIn~~GPf   62 (138)
                      .++.++++|+.|++++.++++       +.|++||++|.+
T Consensus        60 ~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~id~lv~nAg~~   99 (264)
T 3ucx_A           60 RRALSVGTDITDDAQVAHLVDETMKAYGRVDVVINNAFRV   99 (264)
T ss_dssp             CCEEEEECCTTCHHHHHHHHHHHHHHTSCCSEEEECCCSC
T ss_pred             CcEEEEEcCCCCHHHHHHHHHHHHHHcCCCcEEEECCCCC
Confidence            467899999999999999987       579999999754

>3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics, oxidoreductase, S structural genomics center for infectious disease, ssgcid; 2.09A {Bartonella henselae} PDB: 3enn_A 3emk_A

Probab=89.87  E-value=0.32  Score=37.13  Aligned_cols=33  Identities=18%  Similarity=0.160  Sum_probs=29.2

Q ss_pred             CCcceEEeeCCCHHHHHHHHh-------cCcEEEecCCCc
Q psy12849         30 RTNRTTVVNTINESSILIMAK-------KCRVILNCVGPY   62 (138)
Q Consensus        30 ~~~~~~~~D~~d~~~L~~~~~-------~~dvVIn~~GPf   62 (138)
                      .++.++.+|+.|++++.++++       +.|++||++|..
T Consensus        73 ~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~lvnnAg~~  112 (266)
T 3grp_A           73 KDVFVFSANLSDRKSIKQLAEVAEREMEGIDILVNNAGIT  112 (266)
T ss_dssp             SSEEEEECCTTSHHHHHHHHHHHHHHHTSCCEEEECCCCC
T ss_pred             CceEEEEeecCCHHHHHHHHHHHHHHcCCCCEEEECCCCC
Confidence            367899999999999999987       689999999964

>3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 2.00A {Mycobacterium ulcerans}

Probab=89.84  E-value=0.52  Score=35.88  Aligned_cols=31  Identities=16%  Similarity=0.234  Sum_probs=27.7

Q ss_pred             CcceEEeeCCCHHHHHHHHhc-------CcEEEecCCC
Q psy12849         31 TNRTTVVNTINESSILIMAKK-------CRVILNCVGP   61 (138)
Q Consensus        31 ~~~~~~~D~~d~~~L~~~~~~-------~dvVIn~~GP   61 (138)
                      ++.++++|+.|++++.+++++       .|++||++|.
T Consensus        64 ~~~~~~~Dv~~~~~v~~~~~~~~~~~g~id~lv~nAg~  101 (281)
T 3svt_A           64 AIRYEPTDITNEDETARAVDAVTAWHGRLHGVVHCAGG  101 (281)
T ss_dssp             EEEEEECCTTSHHHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred             eEEEEeCCCCCHHHHHHHHHHHHHHcCCCCEEEECCCc
Confidence            678899999999999999884       5999999995

>3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Vibrio parahaemolyticus}

Probab=89.83  E-value=0.35  Score=35.60  Aligned_cols=33  Identities=3%  Similarity=0.049  Sum_probs=29.4

Q ss_pred             CCcceEEeeCCCHHHHHHHHhcC----cEEEecCCCc
Q psy12849         30 RTNRTTVVNTINESSILIMAKKC----RVILNCVGPY   62 (138)
Q Consensus        30 ~~~~~~~~D~~d~~~L~~~~~~~----dvVIn~~GPf   62 (138)
                      .++.++.+|+.|++++.+++++.    |++||++|..
T Consensus        47 ~~~~~~~~D~~~~~~v~~~~~~~~~~~d~lv~~Ag~~   83 (230)
T 3guy_A           47 NNVGYRARDLASHQEVEQLFEQLDSIPSTVVHSAGSG   83 (230)
T ss_dssp             SCCCEEECCTTCHHHHHHHHHSCSSCCSEEEECCCCC
T ss_pred             hccCeEeecCCCHHHHHHHHHHHhhcCCEEEEeCCcC
Confidence            46889999999999999999986    8999999843

>3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti}

Probab=89.81  E-value=0.32  Score=37.24  Aligned_cols=33  Identities=9%  Similarity=0.162  Sum_probs=29.1

Q ss_pred             CCcceEEeeCCCHHHHHHHHh-------cCcEEEecCCCc
Q psy12849         30 RTNRTTVVNTINESSILIMAK-------KCRVILNCVGPY   62 (138)
Q Consensus        30 ~~~~~~~~D~~d~~~L~~~~~-------~~dvVIn~~GPf   62 (138)
                      .++.++.+|+.|++++.++++       +.|++||++|..
T Consensus        81 ~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~lvnnAg~~  120 (271)
T 3v2g_A           81 GRAVAIRADNRDAEAIEQAIRETVEALGGLDILVNSAGIW  120 (271)
T ss_dssp             CCEEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEECCCCC
T ss_pred             CcEEEEECCCCCHHHHHHHHHHHHHHcCCCcEEEECCCCC
Confidence            467889999999999999988       689999999854

>3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.50A {Mycobacterium thermoresistibile}

Probab=89.78  E-value=0.25  Score=38.00  Aligned_cols=33  Identities=6%  Similarity=0.021  Sum_probs=29.0

Q ss_pred             CCcceEEeeCCCHHHHHHHHh-------cCcEEEecCCCc
Q psy12849         30 RTNRTTVVNTINESSILIMAK-------KCRVILNCVGPY   62 (138)
Q Consensus        30 ~~~~~~~~D~~d~~~L~~~~~-------~~dvVIn~~GPf   62 (138)
                      .++.++++|++|++++.++++       +.|++||++|..
T Consensus        65 ~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~id~lvnnAg~~  104 (285)
T 3sc4_A           65 GQALPIVGDIRDGDAVAAAVAKTVEQFGGIDICVNNASAI  104 (285)
T ss_dssp             SEEEEEECCTTSHHHHHHHHHHHHHHHSCCSEEEECCCCC
T ss_pred             CcEEEEECCCCCHHHHHHHHHHHHHHcCCCCEEEECCCCC
Confidence            357889999999999999988       689999999954

>2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A*

Probab=89.74  E-value=0.33  Score=37.11  Aligned_cols=33  Identities=12%  Similarity=0.104  Sum_probs=28.5

Q ss_pred             CCcceEEeeCCCHHHHHHHHh-------cCcEEEecCCCc
Q psy12849         30 RTNRTTVVNTINESSILIMAK-------KCRVILNCVGPY   62 (138)
Q Consensus        30 ~~~~~~~~D~~d~~~L~~~~~-------~~dvVIn~~GPf   62 (138)
                      .++.++.+|+.|++++.++++       +.|++||++|..
T Consensus        71 ~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iD~lv~~Ag~~  110 (277)
T 2rhc_B           71 VEADGRTCDVRSVPEIEALVAAVVERYGPVDVLVNNAGRP  110 (277)
T ss_dssp             CCEEEEECCTTCHHHHHHHHHHHHHHTCSCSEEEECCCCC
T ss_pred             CceEEEECCCCCHHHHHHHHHHHHHHhCCCCEEEECCCCC
Confidence            357889999999999999888       589999999853

>3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural genomics center for infectious disease, S brucellosis; 2.20A {Brucella melitensis biovar abortus}

Probab=89.71  E-value=0.36  Score=36.13  Aligned_cols=34  Identities=12%  Similarity=0.156  Sum_probs=29.4

Q ss_pred             CCcceEEeeCCCHHHHHHHHh-------cCcEEEecCCCcc
Q psy12849         30 RTNRTTVVNTINESSILIMAK-------KCRVILNCVGPYT   63 (138)
Q Consensus        30 ~~~~~~~~D~~d~~~L~~~~~-------~~dvVIn~~GPf~   63 (138)
                      .++.++.+|+.|++++.++++       +.|++||++|...
T Consensus        55 ~~~~~~~~D~~~~~~~~~~~~~~~~~~g~id~li~~Ag~~~   95 (261)
T 3n74_A           55 DAALAVAADISKEADVDAAVEAALSKFGKVDILVNNAGIGH   95 (261)
T ss_dssp             TTEEEEECCTTSHHHHHHHHHHHHHHHSCCCEEEECCCCCC
T ss_pred             CceEEEEecCCCHHHHHHHHHHHHHhcCCCCEEEECCccCC
Confidence            467899999999999999988       5699999999643

>1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain dehydrogenase, beta- oxidation, NADP, oxidoreductase; HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB: 1w73_A* 1w8d_A*

Probab=89.69  E-value=0.23  Score=37.98  Aligned_cols=32  Identities=3%  Similarity=0.067  Sum_probs=28.3

Q ss_pred             CCcceEEeeCCCHHHHHHHHhcC-------cEEEecCCC
Q psy12849         30 RTNRTTVVNTINESSILIMAKKC-------RVILNCVGP   61 (138)
Q Consensus        30 ~~~~~~~~D~~d~~~L~~~~~~~-------dvVIn~~GP   61 (138)
                      .++.++.+|+.|++++.+++++.       |+|||++|.
T Consensus        76 ~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~id~li~~Ag~  114 (302)
T 1w6u_A           76 NKVHAIQCDVRDPDMVQNTVSELIKVAGHPNIVINNAAG  114 (302)
T ss_dssp             SCEEEEECCTTCHHHHHHHHHHHHHHTCSCSEEEECCCC
T ss_pred             CceEEEEeCCCCHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence            36789999999999999998865       999999984

>3qy9_A DHPR, dihydrodipicolinate reductase; rossmann fold, NADH, NADPH, oxidoreductase; 1.80A {Staphylococcus aureus}

Probab=89.69  E-value=0.053  Score=42.10  Aligned_cols=65  Identities=11%  Similarity=0.042  Sum_probs=42.3

Q ss_pred             HHHHHhcCcEEEecCCCccchhHHHHHHHHHcCCCeeeCCCChHHHHHHHHHhHHHHHhCCCEEEeCCCCccch
Q psy12849         45 ILIMAKKCRVILNCVGPYTWYGEAVVKACIEAKTHHVDITGEPYFMEYMQYEYNTRAQESEVCVVSACGIETLP  118 (138)
Q Consensus        45 L~~~~~~~dvVIn~~GPf~~~~~~v~~Aci~~g~hYvDisge~~~~~~~~~~~~~~A~~~gv~iv~~~G~d~~p  118 (138)
                      +.+++ ++|+||+++.|-...  ..++  +++|+|.|-  |.+.|..+-..++.+.|++  +.++.+.-|+.+.
T Consensus        49 l~~l~-~~DVvIDft~p~a~~--~~~~--l~~g~~vVi--gTTG~s~e~~~~l~~aa~~--~~v~~a~N~S~Gv  113 (243)
T 3qy9_A           49 IADVK-GADVAIDFSNPNLLF--PLLD--EDFHLPLVV--ATTGEKEKLLNKLDELSQN--MPVFFSANMSYGV  113 (243)
T ss_dssp             TTTCT-TCSEEEECSCHHHHH--HHHT--SCCCCCEEE--CCCSSHHHHHHHHHHHTTT--SEEEECSSCCHHH
T ss_pred             HHHHh-CCCEEEEeCChHHHH--HHHH--HhcCCceEe--CCCCCCHHHHHHHHHHHhc--CCEEEECCccHHH
Confidence            44455 899999999886544  4455  899999984  4445554434466666655  5566666663333

>3d7l_A LIN1944 protein; APC89317, structural genomics, PS protein structure initiative, midwest center for structural genomics, MCSG; 2.06A {Listeria innocua}

Probab=89.68  E-value=0.52  Score=33.68  Aligned_cols=29  Identities=24%  Similarity=0.298  Sum_probs=25.8

Q ss_pred             ceEEeeCCCHHHHHHHHhc---CcEEEecCCC
Q psy12849         33 RTTVVNTINESSILIMAKK---CRVILNCVGP   61 (138)
Q Consensus        33 ~~~~~D~~d~~~L~~~~~~---~dvVIn~~GP   61 (138)
                      +.+.+|+.|++++.+++++   .|+|||++|.
T Consensus        37 ~~~~~D~~~~~~~~~~~~~~~~~d~vi~~ag~   68 (202)
T 3d7l_A           37 GDVTVDITNIDSIKKMYEQVGKVDAIVSATGS   68 (202)
T ss_dssp             SSEECCTTCHHHHHHHHHHHCCEEEEEECCCC
T ss_pred             cceeeecCCHHHHHHHHHHhCCCCEEEECCCC
Confidence            3678999999999999987   7999999984

>3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium}

Probab=89.64  E-value=0.65  Score=35.86  Aligned_cols=33  Identities=9%  Similarity=0.084  Sum_probs=29.0

Q ss_pred             CCcceEEeeCCCHHHHHHHHh-------cCcEEEecCCCc
Q psy12849         30 RTNRTTVVNTINESSILIMAK-------KCRVILNCVGPY   62 (138)
Q Consensus        30 ~~~~~~~~D~~d~~~L~~~~~-------~~dvVIn~~GPf   62 (138)
                      .++.++++|+.|++++.++++       +.|++||++|-.
T Consensus        89 ~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iD~lv~nAg~~  128 (299)
T 3t7c_A           89 RRIIASQVDVRDFDAMQAAVDDGVTQLGRLDIVLANAALA  128 (299)
T ss_dssp             CCEEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEECCCCC
T ss_pred             CceEEEECCCCCHHHHHHHHHHHHHHhCCCCEEEECCCCC
Confidence            468899999999999999987       689999999943

>3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei}

Probab=89.61  E-value=0.36  Score=36.90  Aligned_cols=33  Identities=18%  Similarity=0.267  Sum_probs=28.7

Q ss_pred             CCcceEEeeCCCHHHHHHHHh-------cCcEEEecCCCc
Q psy12849         30 RTNRTTVVNTINESSILIMAK-------KCRVILNCVGPY   62 (138)
Q Consensus        30 ~~~~~~~~D~~d~~~L~~~~~-------~~dvVIn~~GPf   62 (138)
                      .++.++.+|+.|++++.++++       +.|++||++|..
T Consensus        77 ~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~lvnnAg~~  116 (270)
T 3ftp_A           77 LEGRGAVLNVNDATAVDALVESTLKEFGALNVLVNNAGIT  116 (270)
T ss_dssp             CCCEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEECCCCC
T ss_pred             CcEEEEEEeCCCHHHHHHHHHHHHHHcCCCCEEEECCCCC
Confidence            367889999999999999988       689999999843

>3ing_A Homoserine dehydrogenase; NP_394635.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: NDP; 1.95A {Thermoplasma acidophilum}

Probab=89.61  E-value=1.1  Score=35.97  Aligned_cols=60  Identities=7%  Similarity=0.067  Sum_probs=44.0

Q ss_pred             cCcEEEecCCCccc--hhHHHHHHHHHcCCCeeeCCCChHHHHHHHHHhHHHHHhCCCEEEeCC
Q psy12849         51 KCRVILNCVGPYTW--YGEAVVKACIEAKTHHVDITGEPYFMEYMQYEYNTRAQESEVCVVSAC  112 (138)
Q Consensus        51 ~~dvVIn~~GPf~~--~~~~v~~Aci~~g~hYvDisge~~~~~~~~~~~~~~A~~~gv~iv~~~  112 (138)
                      ..|+||.|.+|...  .+...+..|+++|.|-|..+-. +..... .++.+.|+++|+.+...+
T Consensus        82 ~iDvVVe~T~~~~~~~pa~~~~~~aL~aGkhVVtaNK~-~la~~~-~eL~~lA~~~g~~~~~Ea  143 (325)
T 3ing_A           82 AADLLVDCTPASRDGVREYSLYRMAFESGMNVVTANKS-GLANKW-HDIMDSANQNSKYIRYEA  143 (325)
T ss_dssp             CCSEEEECCCCCSSSHHHHHHHHHHHHTTCEEEECCCH-HHHHHH-HHHHHHHHHHTCCEECGG
T ss_pred             CCCEEEECCCCccccchHHHHHHHHHHCCCeEEEcCch-hHHHHH-HHHHHHHHHcCCeEEEEe
Confidence            57999999976522  2347899999999999987543 333333 477788999999887544

>4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis}

Probab=89.60  E-value=0.25  Score=37.59  Aligned_cols=34  Identities=15%  Similarity=0.163  Sum_probs=29.4

Q ss_pred             CCcceEEeeCCCHHHHHHHHh-------cCcEEEecCCCcc
Q psy12849         30 RTNRTTVVNTINESSILIMAK-------KCRVILNCVGPYT   63 (138)
Q Consensus        30 ~~~~~~~~D~~d~~~L~~~~~-------~~dvVIn~~GPf~   63 (138)
                      .++.++++|+.|++++.++++       +.|++||++|...
T Consensus        70 ~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~id~lv~nAg~~~  110 (266)
T 4egf_A           70 TDVHTVAIDLAEPDAPAELARRAAEAFGGLDVLVNNAGISH  110 (266)
T ss_dssp             CCEEEEECCTTSTTHHHHHHHHHHHHHTSCSEEEEECCCCC
T ss_pred             CcEEEEEecCCCHHHHHHHHHHHHHHcCCCCEEEECCCcCC
Confidence            468899999999999998887       6899999999643

>4f6c_A AUSA reductase domain protein; thioester reductase, oxidoreductase; 2.81A {Staphylococcus aureus}

Probab=89.58  E-value=0.12  Score=41.87  Aligned_cols=52  Identities=6%  Similarity=0.081  Sum_probs=36.9

Q ss_pred             CCcceEEeeCCCHHHHHHHHhcCcEEEecCCCccch-------------hHHHHHHHHHcCCCeee
Q psy12849         30 RTNRTTVVNTINESSILIMAKKCRVILNCVGPYTWY-------------GEAVVKACIEAKTHHVD   82 (138)
Q Consensus        30 ~~~~~~~~D~~d~~~L~~~~~~~dvVIn~~GPf~~~-------------~~~v~~Aci~~g~hYvD   82 (138)
                      .++.++..|+.|++++. ...++|+||||+|+....             ...++++|.+.+.++|=
T Consensus       130 ~~v~~v~~Dl~d~~~l~-~~~~~d~Vih~A~~~~~~~~~~~~~~~Nv~g~~~l~~aa~~~~~~~v~  194 (427)
T 4f6c_A          130 SNIEVIVGDFECMDDVV-LPENMDTIIHAGARTDHFGDDDEFEKVNVQGTVDVIRLAQQHHARLIY  194 (427)
T ss_dssp             TTEEEEEECC---CCCC-CSSCCSEEEECCCCC-------CHHHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred             CceEEEeCCCCCcccCC-CcCCCCEEEECCcccCCCCCHHHHHHHHHHHHHHHHHHHHhcCCcEEE
Confidence            57899999999988888 778899999999976421             14688899885555543

>1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A {Magnaporthe grisea} SCOP: c.2.1.2

Probab=89.58  E-value=0.25  Score=37.02  Aligned_cols=33  Identities=6%  Similarity=0.070  Sum_probs=28.9

Q ss_pred             CCcceEEeeCCCHHHHHHHHh-------cCcEEEecCCCc
Q psy12849         30 RTNRTTVVNTINESSILIMAK-------KCRVILNCVGPY   62 (138)
Q Consensus        30 ~~~~~~~~D~~d~~~L~~~~~-------~~dvVIn~~GPf   62 (138)
                      .++.++.+|+.|++++.++++       +.|+|||++|..
T Consensus        71 ~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d~vi~~Ag~~  110 (274)
T 1ja9_A           71 AQGVAIQADISKPSEVVALFDKAVSHFGGLDFVMSNSGME  110 (274)
T ss_dssp             CCEEEEECCTTSHHHHHHHHHHHHHHHSCEEEEECCCCCC
T ss_pred             CcEEEEEecCCCHHHHHHHHHHHHHHcCCCCEEEECCCCC
Confidence            357789999999999999988       789999999854

>1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain, oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans} SCOP: c.2.1.2

Probab=89.56  E-value=0.34  Score=36.56  Aligned_cols=33  Identities=18%  Similarity=0.251  Sum_probs=28.1

Q ss_pred             CCcceEEeeCCCHHHHHHHHh-------cCcEEEecCCCc
Q psy12849         30 RTNRTTVVNTINESSILIMAK-------KCRVILNCVGPY   62 (138)
Q Consensus        30 ~~~~~~~~D~~d~~~L~~~~~-------~~dvVIn~~GPf   62 (138)
                      .++.++.+|+.|++++.++++       +.|++||++|..
T Consensus        56 ~~~~~~~~D~~~~~~~~~~~~~~~~~~g~id~lv~nAg~~   95 (262)
T 1zem_A           56 VEARSYVCDVTSEEAVIGTVDSVVRDFGKIDFLFNNAGYQ   95 (262)
T ss_dssp             SCEEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEECCCCC
T ss_pred             CcEEEEEecCCCHHHHHHHHHHHHHHhCCCCEEEECCCCC
Confidence            357889999999999988887       679999999843

>1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2

Probab=89.55  E-value=0.28  Score=37.29  Aligned_cols=33  Identities=24%  Similarity=0.158  Sum_probs=28.3

Q ss_pred             CCcceEEeeCCCHHHHHHHHh-------cCcEEEecCCCc
Q psy12849         30 RTNRTTVVNTINESSILIMAK-------KCRVILNCVGPY   62 (138)
Q Consensus        30 ~~~~~~~~D~~d~~~L~~~~~-------~~dvVIn~~GPf   62 (138)
                      .++.++.+|+.|++++.++++       +.|+|||++|..
T Consensus        83 ~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~iD~vi~~Ag~~  122 (279)
T 1xg5_A           83 GTLIPYRCDLSNEEDILSMFSAIRSQHSGVDICINNAGLA  122 (279)
T ss_dssp             SEEEEEECCTTCHHHHHHHHHHHHHHHCCCSEEEECCCCC
T ss_pred             ceEEEEEecCCCHHHHHHHHHHHHHhCCCCCEEEECCCCC
Confidence            356788999999999999887       689999999843

>2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A*

Probab=89.52  E-value=0.59  Score=35.08  Aligned_cols=32  Identities=16%  Similarity=0.184  Sum_probs=27.8

Q ss_pred             CcceEEeeCCCHHHHHHHHh--------cCcEEEecCCCc
Q psy12849         31 TNRTTVVNTINESSILIMAK--------KCRVILNCVGPY   62 (138)
Q Consensus        31 ~~~~~~~D~~d~~~L~~~~~--------~~dvVIn~~GPf   62 (138)
                      ++.++.+|+.|++++.++++        +.|++||++|..
T Consensus        59 ~~~~~~~D~~~~~~~~~~~~~~~~~~~g~id~lv~~Ag~~   98 (260)
T 2ae2_A           59 KVEASVCDLSSRSERQELMNTVANHFHGKLNILVNNAGIV   98 (260)
T ss_dssp             EEEEEECCTTCHHHHHHHHHHHHHHTTTCCCEEEECCCCC
T ss_pred             cEEEEEcCCCCHHHHHHHHHHHHHHcCCCCCEEEECCCCC
Confidence            57789999999999999884        689999999953

>3op4_A 3-oxoacyl-[acyl-carrier protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE NAP; 1.60A {Vibrio cholerae o1 biovar el tor} SCOP: c.2.1.2 PDB: 3rsh_A* 3rro_A* 4i08_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A* 1i01_A* 1q7c_A* 2cf2_E

Probab=89.51  E-value=0.32  Score=36.51  Aligned_cols=32  Identities=22%  Similarity=0.285  Sum_probs=28.0

Q ss_pred             CcceEEeeCCCHHHHHHHHh-------cCcEEEecCCCc
Q psy12849         31 TNRTTVVNTINESSILIMAK-------KCRVILNCVGPY   62 (138)
Q Consensus        31 ~~~~~~~D~~d~~~L~~~~~-------~~dvVIn~~GPf   62 (138)
                      +...+++|+.|++++.++++       +.|++||++|..
T Consensus        56 ~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~lv~nAg~~   94 (248)
T 3op4_A           56 NGKGMALNVTNPESIEAVLKAITDEFGGVDILVNNAGIT   94 (248)
T ss_dssp             GEEEEECCTTCHHHHHHHHHHHHHHHCCCSEEEECCCCC
T ss_pred             cceEEEEeCCCHHHHHHHHHHHHHHcCCCCEEEECCCCC
Confidence            45788999999999999988       689999999954

>4ibo_A Gluconate dehydrogenase; enzyme function initiative structural genomics, oxidoreductase; 2.10A {Agrobacterium fabrum}

Probab=89.51  E-value=0.27  Score=37.63  Aligned_cols=33  Identities=15%  Similarity=0.234  Sum_probs=29.1

Q ss_pred             CCcceEEeeCCCHHHHHHHHh-------cCcEEEecCCCc
Q psy12849         30 RTNRTTVVNTINESSILIMAK-------KCRVILNCVGPY   62 (138)
Q Consensus        30 ~~~~~~~~D~~d~~~L~~~~~-------~~dvVIn~~GPf   62 (138)
                      .++.++++|+.|++++.++++       +.|++||++|..
T Consensus        75 ~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~lv~nAg~~  114 (271)
T 4ibo_A           75 HDAEAVAFDVTSESEIIEAFARLDEQGIDVDILVNNAGIQ  114 (271)
T ss_dssp             CCEEECCCCTTCHHHHHHHHHHHHHHTCCCCEEEECCCCC
T ss_pred             CceEEEEcCCCCHHHHHHHHHHHHHHCCCCCEEEECCCCC
Confidence            467889999999999999998       689999999964

>3ohs_X Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; dimeric dihydrodiol dehydrogenase, MDD, oxidoreductase; 1.90A {Macaca fascicularis} PDB: 2o48_X 2poq_X* 2o4u_X

Probab=89.49  E-value=2.6  Score=32.89  Aligned_cols=74  Identities=16%  Similarity=0.092  Sum_probs=50.7

Q ss_pred             HHHHHh--cCcEEEecCCCccchhHHHHHHHHHcCCCeee---CCCChHHHHHHHHHhHHHHHhCCCEEEeCCCCccchH
Q psy12849         45 ILIMAK--KCRVILNCVGPYTWYGEAVVKACIEAKTHHVD---ITGEPYFMEYMQYEYNTRAQESEVCVVSACGIETLPI  119 (138)
Q Consensus        45 L~~~~~--~~dvVIn~~GPf~~~~~~v~~Aci~~g~hYvD---isge~~~~~~~~~~~~~~A~~~gv~iv~~~G~d~~p~  119 (138)
                      +.++++  +.|+|+-|. |-..+ .++++.|+++|.|-+=   ++-...-.+    ++-+.|+++|+.+..+.-+-..|.
T Consensus        58 ~~~ll~~~~vD~V~i~t-p~~~H-~~~~~~al~~GkhVl~EKP~a~~~~e~~----~l~~~a~~~~~~~~v~~~~r~~p~  131 (334)
T 3ohs_X           58 YEELAKDPNVEVAYVGT-QHPQH-KAAVMLCLAAGKAVLCEKPMGVNAAEVR----EMVTEARSRGLFLMEAIWTRFFPA  131 (334)
T ss_dssp             HHHHHHCTTCCEEEECC-CGGGH-HHHHHHHHHTTCEEEEESSSSSSHHHHH----HHHHHHHHTTCCEEEECGGGGSHH
T ss_pred             HHHHhcCCCCCEEEECC-CcHHH-HHHHHHHHhcCCEEEEECCCCCCHHHHH----HHHHHHHHhCCEEEEEEhHhcCHH
Confidence            455666  589999999 65556 4789999999999652   344443343    344678899999887765545565


Q ss_pred             hHHHH
Q psy12849        120 DMGVL  124 (138)
Q Consensus       120 dl~~~  124 (138)
                      -..+.
T Consensus       132 ~~~~k  136 (334)
T 3ohs_X          132 SEALR  136 (334)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            44443

>1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A*

Probab=89.48  E-value=0.33  Score=37.53  Aligned_cols=58  Identities=10%  Similarity=-0.029  Sum_probs=40.1

Q ss_pred             CcceEEeeCCCHHHHHHHHhcCcEEEecCCCccchhHHHHHHH-HHcCCCeeeCCCChHH
Q psy12849         31 TNRTTVVNTINESSILIMAKKCRVILNCVGPYTWYGEAVVKAC-IEAKTHHVDITGEPYF   89 (138)
Q Consensus        31 ~~~~~~~D~~d~~~L~~~~~~~dvVIn~~GPf~~~~~~v~~Ac-i~~g~hYvDisge~~~   89 (138)
                      ++.+..+|+.|++++.++++++|+||||+|..... .+..+.- ++.....+|+...+++
T Consensus       168 ~~~~~~~D~~~~~~~~~~~~~~DvlVn~ag~g~~~-~~~~~~~~~~~~~~~~dvn~~~~~  226 (287)
T 1lu9_A          168 KVNVTAAETADDASRAEAVKGAHFVFTAGAIGLEL-LPQAAWQNESSIEIVADYNAQPPL  226 (287)
T ss_dssp             TCCCEEEECCSHHHHHHHTTTCSEEEECCCTTCCS-BCHHHHTTCTTCCEEEECCCSSSC
T ss_pred             CcEEEEecCCCHHHHHHHHHhCCEEEECCCccccC-CChhHcCchHHHHHHHHhhhhhhH
Confidence            45678899999999999999999999999632211 1233332 2555667777665544

>4iiu_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAP; 2.10A {Escherichia coli} PDB: 4iiv_A*

Probab=89.45  E-value=0.39  Score=36.27  Aligned_cols=33  Identities=9%  Similarity=0.024  Sum_probs=29.3

Q ss_pred             CCcceEEeeCCCHHHHHHHHh-------cCcEEEecCCCc
Q psy12849         30 RTNRTTVVNTINESSILIMAK-------KCRVILNCVGPY   62 (138)
Q Consensus        30 ~~~~~~~~D~~d~~~L~~~~~-------~~dvVIn~~GPf   62 (138)
                      .++.++.+|+.|++++.++++       +.|++||++|..
T Consensus        76 ~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~id~li~nAg~~  115 (267)
T 4iiu_A           76 GNGRLLSFDVANREQCREVLEHEIAQHGAWYGVVSNAGIA  115 (267)
T ss_dssp             CCEEEEECCTTCHHHHHHHHHHHHHHHCCCSEEEECCCCC
T ss_pred             CceEEEEecCCCHHHHHHHHHHHHHHhCCccEEEECCCCC
Confidence            467899999999999999988       689999999864

>2fwm_X 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; enterobactin, rossman fold, chorismate metabolism, short-CHA oxidoreductase, tetramer; 2.00A {Escherichia coli}

Probab=89.45  E-value=0.38  Score=36.06  Aligned_cols=31  Identities=13%  Similarity=0.283  Sum_probs=27.4

Q ss_pred             cceEEeeCCCHHHHHHHHh-------cCcEEEecCCCc
Q psy12849         32 NRTTVVNTINESSILIMAK-------KCRVILNCVGPY   62 (138)
Q Consensus        32 ~~~~~~D~~d~~~L~~~~~-------~~dvVIn~~GPf   62 (138)
                      +.++.+|+.|++++.++++       +.|++||++|..
T Consensus        48 ~~~~~~D~~d~~~~~~~~~~~~~~~g~id~lv~~Ag~~   85 (250)
T 2fwm_X           48 FATEVMDVADAAQVAQVCQRLLAETERLDALVNAAGIL   85 (250)
T ss_dssp             SEEEECCTTCHHHHHHHHHHHHHHCSCCCEEEECCCCC
T ss_pred             ceEEEcCCCCHHHHHHHHHHHHHHcCCCCEEEECCCcC
Confidence            6778899999999999987       689999999853

>1xkq_A Short-chain reductase family member (5D234); parrallel beta-sheet of seven strands in the order 3214567; HET: NDP; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=89.42  E-value=0.31  Score=37.15  Aligned_cols=32  Identities=19%  Similarity=0.221  Sum_probs=28.1

Q ss_pred             CcceEEeeCCCHHHHHHHHh-------cCcEEEecCCCc
Q psy12849         31 TNRTTVVNTINESSILIMAK-------KCRVILNCVGPY   62 (138)
Q Consensus        31 ~~~~~~~D~~d~~~L~~~~~-------~~dvVIn~~GPf   62 (138)
                      ++.++.+|+.|++++.++++       +.|++||++|..
T Consensus        59 ~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iD~lv~nAg~~   97 (280)
T 1xkq_A           59 QVNSVVADVTTEDGQDQIINSTLKQFGKIDVLVNNAGAA   97 (280)
T ss_dssp             GEEEEECCTTSHHHHHHHHHHHHHHHSCCCEEEECCCCC
T ss_pred             ceEEEEecCCCHHHHHHHHHHHHHhcCCCCEEEECCCCC
Confidence            57889999999999999887       579999999854

>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber}

Probab=89.40  E-value=0.4  Score=36.74  Aligned_cols=33  Identities=6%  Similarity=0.136  Sum_probs=28.9

Q ss_pred             CCcceEEeeCCCHHHHHHHHh-------cCcEEEecCCCc
Q psy12849         30 RTNRTTVVNTINESSILIMAK-------KCRVILNCVGPY   62 (138)
Q Consensus        30 ~~~~~~~~D~~d~~~L~~~~~-------~~dvVIn~~GPf   62 (138)
                      .++.++.+|+.|++++.++++       +.|++||++|..
T Consensus        73 ~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~id~lv~nAg~~  112 (279)
T 3sju_A           73 HDVDGSSCDVTSTDEVHAAVAAAVERFGPIGILVNSAGRN  112 (279)
T ss_dssp             CCEEEEECCTTCHHHHHHHHHHHHHHHCSCCEEEECCCCC
T ss_pred             CcEEEEECCCCCHHHHHHHHHHHHHHcCCCcEEEECCCCC
Confidence            468899999999999999887       569999999964

>3dty_A Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetramer, PSI-2, 11131, NYSGXRC, structural genomics, protein structure initiative; 2.04A {Pseudomonas syringae PV}

Probab=89.39  E-value=1.9  Score=34.67  Aligned_cols=68  Identities=15%  Similarity=0.024  Sum_probs=46.8

Q ss_pred             cCcEEEecCCCccchhHHHHHHHHHcCCCeee---CCCChHHHHHHHHHhHHHHHhCCCEEEeCCCCccchHhHHHH
Q psy12849         51 KCRVILNCVGPYTWYGEAVVKACIEAKTHHVD---ITGEPYFMEYMQYEYNTRAQESEVCVVSACGIETLPIDMGVL  124 (138)
Q Consensus        51 ~~dvVIn~~GPf~~~~~~v~~Aci~~g~hYvD---isge~~~~~~~~~~~~~~A~~~gv~iv~~~G~d~~p~dl~~~  124 (138)
                      +.|+|+-|. |-..+ .+++++|+++|.|.+=   ++-...-.+    ++-+.|+++|+.+..+.-+-..|.-..+.
T Consensus        85 ~vD~V~i~t-p~~~H-~~~~~~al~aGkhVl~EKPla~~~~ea~----~l~~~a~~~g~~~~v~~~~r~~p~~~~~k  155 (398)
T 3dty_A           85 GIQAVSIAT-PNGTH-YSITKAALEAGLHVVCEKPLCFTVEQAE----NLRELSHKHNRIVGVTYGYAGHQLIEQAR  155 (398)
T ss_dssp             CCSEEEEES-CGGGH-HHHHHHHHHTTCEEEECSCSCSCHHHHH----HHHHHHHHTTCCEEECCGGGGSHHHHHHH
T ss_pred             CCCEEEECC-CcHHH-HHHHHHHHHCCCeEEEeCCCcCCHHHHH----HHHHHHHHcCCeEEEEecccCCHHHHHHH
Confidence            389999999 55556 4789999999999763   333333333    34467889999987776655556544443

>1uls_A Putative 3-oxoacyl-acyl carrier protein reductase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.40A {Thermus thermophilus} SCOP: c.2.1.2

Probab=89.39  E-value=0.34  Score=36.26  Aligned_cols=31  Identities=10%  Similarity=0.082  Sum_probs=27.4

Q ss_pred             cceEEeeCCCHHHHHHHHhc-------CcEEEecCCCc
Q psy12849         32 NRTTVVNTINESSILIMAKK-------CRVILNCVGPY   62 (138)
Q Consensus        32 ~~~~~~D~~d~~~L~~~~~~-------~dvVIn~~GPf   62 (138)
                      +.++.+|+.|++++.+++++       .|++||++|..
T Consensus        51 ~~~~~~D~~~~~~~~~~~~~~~~~~g~id~lvn~Ag~~   88 (245)
T 1uls_A           51 AHPVVMDVADPASVERGFAEALAHLGRLDGVVHYAGIT   88 (245)
T ss_dssp             CEEEECCTTCHHHHHHHHHHHHHHHSSCCEEEECCCCC
T ss_pred             CEEEEecCCCHHHHHHHHHHHHHHcCCCCEEEECCCCC
Confidence            67889999999999998875       79999999954

>3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A

Probab=89.32  E-value=0.35  Score=36.70  Aligned_cols=33  Identities=6%  Similarity=0.038  Sum_probs=29.0

Q ss_pred             CCcceEEeeCCCHHHHHHHHh-------cCcEEEecCCCc
Q psy12849         30 RTNRTTVVNTINESSILIMAK-------KCRVILNCVGPY   62 (138)
Q Consensus        30 ~~~~~~~~D~~d~~~L~~~~~-------~~dvVIn~~GPf   62 (138)
                      .++.++++|+.|++++.++++       +.|++||++|..
T Consensus        68 ~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~id~lvnnAg~~  107 (270)
T 3is3_A           68 SDAIAIKADIRQVPEIVKLFDQAVAHFGHLDIAVSNSGVV  107 (270)
T ss_dssp             CCEEEEECCTTSHHHHHHHHHHHHHHHSCCCEEECCCCCC
T ss_pred             CcEEEEEcCCCCHHHHHHHHHHHHHHcCCCCEEEECCCCC
Confidence            467899999999999999988       569999999964

>1oi7_A Succinyl-COA synthetase alpha chain; SCS, ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.23A {Thermus thermophilus} SCOP: c.2.1.8 c.23.4.1

Probab=89.30  E-value=0.95  Score=35.59  Aligned_cols=65  Identities=9%  Similarity=-0.060  Sum_probs=44.5

Q ss_pred             HHHHHHh--cCcEEEecCCCccchhHHHHHHHHHcCCC-eeeCCCChHHHHHHHHHhHHHHHhCCCEEE-eCC
Q psy12849         44 SILIMAK--KCRVILNCVGPYTWYGEAVVKACIEAKTH-HVDITGEPYFMEYMQYEYNTRAQESEVCVV-SAC  112 (138)
Q Consensus        44 ~L~~~~~--~~dvVIn~~GPf~~~~~~v~~Aci~~g~h-YvDisge~~~~~~~~~~~~~~A~~~gv~iv-~~~  112 (138)
                      ++.++.+  ..|++|-++.| .. ...+++.|++.|++ -|=++.-.+- .+ ..++.+.|++.|+.++ |.|
T Consensus        55 sl~el~~~~~~Dv~Ii~vp~-~~-~~~~~~ea~~~Gi~~vVi~t~G~~~-~~-~~~l~~~a~~~gi~vigPNc  123 (288)
T 1oi7_A           55 TVKEAVAHHEVDASIIFVPA-PA-AADAALEAAHAGIPLIVLITEGIPT-LD-MVRAVEEIKALGSRLIGGNC  123 (288)
T ss_dssp             SHHHHHHHSCCSEEEECCCH-HH-HHHHHHHHHHTTCSEEEECCSCCCH-HH-HHHHHHHHHHHTCEEEESSS
T ss_pred             CHHHHhhcCCCCEEEEecCH-HH-HHHHHHHHHHCCCCEEEEECCCCCH-HH-HHHHHHHHHHcCCEEEeCCC
Confidence            4666677  89999999954 33 36899999999999 4444432221 11 2366678899999877 444

>3d3w_A L-xylulose reductase; uronate cycle, short-chain dehydrogenase/reductase(SDR) superfamily, glucose metabolism, acetylation, carbohydrate metabolism; HET: NAP; 1.87A {Homo sapiens} PDB: 1wnt_A* 1pr9_A*

Probab=89.30  E-value=0.81  Score=33.64  Aligned_cols=32  Identities=6%  Similarity=-0.085  Sum_probs=27.6

Q ss_pred             CcceEEeeCCCHHHHHHHHhc---CcEEEecCCCc
Q psy12849         31 TNRTTVVNTINESSILIMAKK---CRVILNCVGPY   62 (138)
Q Consensus        31 ~~~~~~~D~~d~~~L~~~~~~---~dvVIn~~GPf   62 (138)
                      ..+++.+|+.|++++.++++.   .|+|||++|..
T Consensus        53 ~~~~~~~D~~~~~~~~~~~~~~~~id~vi~~Ag~~   87 (244)
T 3d3w_A           53 GIEPVCVDLGDWEATERALGSVGPVDLLVNNAAVA   87 (244)
T ss_dssp             TCEEEECCTTCHHHHHHHHTTCCCCCEEEECCCCC
T ss_pred             CCCEEEEeCCCHHHHHHHHHHcCCCCEEEECCccC
Confidence            457789999999999999974   69999999853

>3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid, structural genomics; 1.95A {Mycobacterium thermoresistibile}

Probab=89.29  E-value=0.39  Score=37.61  Aligned_cols=33  Identities=12%  Similarity=0.153  Sum_probs=29.2

Q ss_pred             CCcceEEeeCCCHHHHHHHHh-------cCcEEEecCCCc
Q psy12849         30 RTNRTTVVNTINESSILIMAK-------KCRVILNCVGPY   62 (138)
Q Consensus        30 ~~~~~~~~D~~d~~~L~~~~~-------~~dvVIn~~GPf   62 (138)
                      .++.++++|+.|++++.++++       +.|++||++|..
T Consensus       107 ~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~lVnnAg~~  146 (317)
T 3oec_A          107 RRIIARQADVRDLASLQAVVDEALAEFGHIDILVSNVGIS  146 (317)
T ss_dssp             CCEEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEECCCCC
T ss_pred             CeEEEEECCCCCHHHHHHHHHHHHHHcCCCCEEEECCCCC
Confidence            467899999999999999988       679999999954

>3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; 2.50A {Mycobacterium marinum} SCOP: c.2.1.0

Probab=89.28  E-value=0.39  Score=36.54  Aligned_cols=33  Identities=21%  Similarity=0.221  Sum_probs=29.1

Q ss_pred             CCcceEEeeCCCHHHHHHHHh-------cCcEEEecCCCc
Q psy12849         30 RTNRTTVVNTINESSILIMAK-------KCRVILNCVGPY   62 (138)
Q Consensus        30 ~~~~~~~~D~~d~~~L~~~~~-------~~dvVIn~~GPf   62 (138)
                      .++.++.+|+.|++++.++++       +.|++||++|..
T Consensus        57 ~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~id~lv~nAg~~   96 (271)
T 3tzq_B           57 RGAVHHVVDLTNEVSVRALIDFTIDTFGRLDIVDNNAAHS   96 (271)
T ss_dssp             TTCEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEECCCCC
T ss_pred             CCeEEEECCCCCHHHHHHHHHHHHHHcCCCCEEEECCCCC
Confidence            367889999999999999998       689999999954

>2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase, structural genomics, SH dehydrogenase/reductase, inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP: c.2.1.2

Probab=89.24  E-value=0.23  Score=37.46  Aligned_cols=32  Identities=9%  Similarity=0.117  Sum_probs=28.0

Q ss_pred             CcceEEeeCCCHHHHHHHHhc-------CcEEEecCCCc
Q psy12849         31 TNRTTVVNTINESSILIMAKK-------CRVILNCVGPY   62 (138)
Q Consensus        31 ~~~~~~~D~~d~~~L~~~~~~-------~dvVIn~~GPf   62 (138)
                      ++.++.+|+.|++++.+++++       .|++||++|..
T Consensus        59 ~~~~~~~D~~~~~~v~~~~~~~~~~~g~id~lv~~Ag~~   97 (267)
T 2gdz_A           59 KTLFIQCDVADQQQLRDTFRKVVDHFGRLDILVNNAGVN   97 (267)
T ss_dssp             GEEEEECCTTSHHHHHHHHHHHHHHHSCCCEEEECCCCC
T ss_pred             ceEEEecCCCCHHHHHHHHHHHHHHcCCCCEEEECCCCC
Confidence            567899999999999998876       59999999964

>1ydw_A AX110P-like protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT4G09670; 2.49A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.5 PDB: 2q4e_A

Probab=89.23  E-value=1.5  Score=34.65  Aligned_cols=69  Identities=7%  Similarity=-0.036  Sum_probs=46.2

Q ss_pred             HHHHHh--cCcEEEecCCCccchhHHHHHHHHHcCCCeee---CCCChHHHHHHHHHhHHHHHhCCCEEEeCCCCccchH
Q psy12849         45 ILIMAK--KCRVILNCVGPYTWYGEAVVKACIEAKTHHVD---ITGEPYFMEYMQYEYNTRAQESEVCVVSACGIETLPI  119 (138)
Q Consensus        45 L~~~~~--~~dvVIn~~GPf~~~~~~v~~Aci~~g~hYvD---isge~~~~~~~~~~~~~~A~~~gv~iv~~~G~d~~p~  119 (138)
                      +.++++  +.|+|+-|+ |-..+ .+++..|+++|.|.+=   ++-...   +. .++.+.|+++|+.++.+.-+-..|.
T Consensus        63 ~~~ll~~~~~D~V~i~t-p~~~h-~~~~~~al~aGk~V~~EKP~a~~~~---e~-~~l~~~a~~~g~~~~~~~~~r~~p~  136 (362)
T 1ydw_A           63 YESLLEDPEIDALYVPL-PTSLH-VEWAIKAAEKGKHILLEKPVAMNVT---EF-DKIVDACEANGVQIMDGTMWVHNPR  136 (362)
T ss_dssp             HHHHHHCTTCCEEEECC-CGGGH-HHHHHHHHTTTCEEEECSSCSSSHH---HH-HHHHHHHHTTTCCEEECCCGGGSGG
T ss_pred             HHHHhcCCCCCEEEEcC-ChHHH-HHHHHHHHHCCCeEEEecCCcCCHH---HH-HHHHHHHHHcCCEEEEEEeeccCHH
Confidence            555665  589999999 55555 4788999999999763   222222   22 3555788999999886654333443

>4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti}

Probab=89.22  E-value=0.23  Score=38.17  Aligned_cols=32  Identities=13%  Similarity=0.008  Sum_probs=28.1

Q ss_pred             CCcceEEeeCCCHHHHHHHHh-------cCcEEEecCCC
Q psy12849         30 RTNRTTVVNTINESSILIMAK-------KCRVILNCVGP   61 (138)
Q Consensus        30 ~~~~~~~~D~~d~~~L~~~~~-------~~dvVIn~~GP   61 (138)
                      .++.++++|+.|++++.++++       +.|++||++|.
T Consensus        79 ~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~lvnnAg~  117 (280)
T 4da9_A           79 ARVIFLRADLADLSSHQATVDAVVAEFGRIDCLVNNAGI  117 (280)
T ss_dssp             CCEEEEECCTTSGGGHHHHHHHHHHHHSCCCEEEEECC-
T ss_pred             CcEEEEEecCCCHHHHHHHHHHHHHHcCCCCEEEECCCc
Confidence            468899999999999999888       68999999985

>3gdg_A Probable NADP-dependent mannitol dehydrogenase; rossmann fold, beta-alpha-beta motifs, open twisted sheet, A NADP, oxidoreductase; 2.30A {Cladosporium herbarum} SCOP: c.2.1.0 PDB: 3gdf_A

Probab=89.22  E-value=0.2  Score=37.74  Aligned_cols=34  Identities=9%  Similarity=0.015  Sum_probs=29.2

Q ss_pred             CCcceEEeeCCCHHHHHHHHhc-------CcEEEecCCCcc
Q psy12849         30 RTNRTTVVNTINESSILIMAKK-------CRVILNCVGPYT   63 (138)
Q Consensus        30 ~~~~~~~~D~~d~~~L~~~~~~-------~dvVIn~~GPf~   63 (138)
                      .++.++++|+.|++++.++++.       .|++||++|...
T Consensus        73 ~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~id~li~nAg~~~  113 (267)
T 3gdg_A           73 IKAKAYKCQVDSYESCEKLVKDVVADFGQIDAFIANAGATA  113 (267)
T ss_dssp             CCEECCBCCTTCHHHHHHHHHHHHHHTSCCSEEEECCCCCC
T ss_pred             CceeEEecCCCCHHHHHHHHHHHHHHcCCCCEEEECCCcCC
Confidence            4688899999999999999885       499999999643

>3kzv_A Uncharacterized oxidoreductase YIR035C; cytoplasmic protein, unknown function, structural genomics, MCSG, protein structure initiative; 2.00A {Saccharomyces cerevisiae}

Probab=89.21  E-value=0.3  Score=36.80  Aligned_cols=32  Identities=13%  Similarity=0.088  Sum_probs=28.4

Q ss_pred             CcceEEeeCCCHHHHHHHHh-------cCcEEEecCCCc
Q psy12849         31 TNRTTVVNTINESSILIMAK-------KCRVILNCVGPY   62 (138)
Q Consensus        31 ~~~~~~~D~~d~~~L~~~~~-------~~dvVIn~~GPf   62 (138)
                      ++.++.+|+.|++++.++++       +.|++||++|..
T Consensus        51 ~~~~~~~Dv~~~~~v~~~~~~~~~~~g~id~lvnnAg~~   89 (254)
T 3kzv_A           51 RFFYVVGDITEDSVLKQLVNAAVKGHGKIDSLVANAGVL   89 (254)
T ss_dssp             GEEEEESCTTSHHHHHHHHHHHHHHHSCCCEEEEECCCC
T ss_pred             ceEEEECCCCCHHHHHHHHHHHHHhcCCccEEEECCccc
Confidence            57889999999999999988       579999999964

>2ehd_A Oxidoreductase, oxidoreductase, short-chain dehydrogenase/reducta; rossman fold, structural genomics, NPPSFA; 2.40A {Thermus thermophilus}

Probab=89.10  E-value=0.41  Score=35.13  Aligned_cols=32  Identities=9%  Similarity=-0.039  Sum_probs=27.8

Q ss_pred             CcceEEeeCCCHHHHHHHHh-------cCcEEEecCCCc
Q psy12849         31 TNRTTVVNTINESSILIMAK-------KCRVILNCVGPY   62 (138)
Q Consensus        31 ~~~~~~~D~~d~~~L~~~~~-------~~dvVIn~~GPf   62 (138)
                      ++.++.+|+.|++++.++++       +.|++||++|..
T Consensus        51 ~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~li~~Ag~~   89 (234)
T 2ehd_A           51 GALPLPGDVREEGDWARAVAAMEEAFGELSALVNNAGVG   89 (234)
T ss_dssp             TCEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEECCCCC
T ss_pred             hceEEEecCCCHHHHHHHHHHHHHHcCCCCEEEECCCcC
Confidence            67889999999999988887       579999999853

>3rih_A Short chain dehydrogenase or reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PG5; 2.15A {Mycobacterium abscessus}

Probab=89.08  E-value=0.46  Score=36.95  Aligned_cols=33  Identities=12%  Similarity=0.068  Sum_probs=28.6

Q ss_pred             CCcceEEeeCCCHHHHHHHHh-------cCcEEEecCCCc
Q psy12849         30 RTNRTTVVNTINESSILIMAK-------KCRVILNCVGPY   62 (138)
Q Consensus        30 ~~~~~~~~D~~d~~~L~~~~~-------~~dvVIn~~GPf   62 (138)
                      .++.++++|+.|++++.++++       +.|++||++|.+
T Consensus        91 ~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~lvnnAg~~  130 (293)
T 3rih_A           91 GNVIGVRLDVSDPGSCADAARTVVDAFGALDVVCANAGIF  130 (293)
T ss_dssp             SCEEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEECCCCC
T ss_pred             CcEEEEEEeCCCHHHHHHHHHHHHHHcCCCCEEEECCCCC
Confidence            478899999999999998887       459999999964

>3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A*

Probab=89.01  E-value=0.39  Score=37.18  Aligned_cols=32  Identities=13%  Similarity=0.121  Sum_probs=28.3

Q ss_pred             CcceEEeeCCCHHHHHHHHh-------cCcEEEecCCCc
Q psy12849         31 TNRTTVVNTINESSILIMAK-------KCRVILNCVGPY   62 (138)
Q Consensus        31 ~~~~~~~D~~d~~~L~~~~~-------~~dvVIn~~GPf   62 (138)
                      ++.++.+|+.|++++.++++       +.|++||++|-.
T Consensus        82 ~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~lVnnAG~~  120 (293)
T 3grk_A           82 AFVAGHCDVADAASIDAVFETLEKKWGKLDFLVHAIGFS  120 (293)
T ss_dssp             CEEEEECCTTCHHHHHHHHHHHHHHTSCCSEEEECCCCC
T ss_pred             CceEEECCCCCHHHHHHHHHHHHHhcCCCCEEEECCccC
Confidence            57889999999999999988       579999999954

>3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti}

Probab=88.98  E-value=0.4  Score=36.93  Aligned_cols=33  Identities=6%  Similarity=0.054  Sum_probs=29.0

Q ss_pred             CCcceEEeeCCCHHHHHHHHh-------cCcEEEecCCCc
Q psy12849         30 RTNRTTVVNTINESSILIMAK-------KCRVILNCVGPY   62 (138)
Q Consensus        30 ~~~~~~~~D~~d~~~L~~~~~-------~~dvVIn~~GPf   62 (138)
                      .++.++++|+.|++++.++++       +.|++||++|..
T Consensus        77 ~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~lVnnAg~~  116 (283)
T 3v8b_A           77 GQAIALEADVSDELQMRNAVRDLVLKFGHLDIVVANAGIN  116 (283)
T ss_dssp             CCEEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEECCCCC
T ss_pred             CcEEEEEccCCCHHHHHHHHHHHHHHhCCCCEEEECCCCC
Confidence            467899999999999999888       689999999954

>3oa2_A WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD; 1.50A {Pseudomonas aeruginosa}

Probab=88.93  E-value=4.2  Score=31.81  Aligned_cols=70  Identities=7%  Similarity=0.078  Sum_probs=48.1

Q ss_pred             hcCcEEEecCCCccchhHHHHHHHHHcCCCeee---CCCChHHHHHHHHHhHHHHHhCCCEEEeCCCCccchHhHHHHH
Q psy12849         50 KKCRVILNCVGPYTWYGEAVVKACIEAKTHHVD---ITGEPYFMEYMQYEYNTRAQESEVCVVSACGIETLPIDMGVLM  125 (138)
Q Consensus        50 ~~~dvVIn~~GPf~~~~~~v~~Aci~~g~hYvD---isge~~~~~~~~~~~~~~A~~~gv~iv~~~G~d~~p~dl~~~~  125 (138)
                      .+.|+|+-|. |-..+ .++++.|+++|.|.+=   ++-...-.+    ++-+.|+++|+.+..+.-+-..|.-..+..
T Consensus        72 ~~vD~V~I~t-P~~~H-~~~~~~al~aGkhVl~EKPla~~~~ea~----~l~~~a~~~g~~~~v~~~~R~~p~~~~~k~  144 (318)
T 3oa2_A           72 TALDYVSICS-PNYLH-YPHIAAGLRLGCDVICEKPLVPTPEMLD----QLAVIERETDKRLYNILQLRHHQAIIALKD  144 (318)
T ss_dssp             TSCCEEEECS-CGGGH-HHHHHHHHHTTCEEEECSSCCSCHHHHH----HHHHHHHHHTCCEEECCGGGGCHHHHHHHH
T ss_pred             CCCcEEEECC-CcHHH-HHHHHHHHHCCCeEEEECCCcCCHHHHH----HHHHHHHHhCCEEEEEEhhhcCHHHHHHHH
Confidence            5689999999 55556 4889999999999762   233333333    444678889998887766655665554443

>3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.40A {Sinorhizobium meliloti}

Probab=88.92  E-value=0.33  Score=37.10  Aligned_cols=33  Identities=12%  Similarity=0.140  Sum_probs=28.8

Q ss_pred             CCcceEEeeCCCHHHHHHHHh-------cCcEEEecCCCc
Q psy12849         30 RTNRTTVVNTINESSILIMAK-------KCRVILNCVGPY   62 (138)
Q Consensus        30 ~~~~~~~~D~~d~~~L~~~~~-------~~dvVIn~~GPf   62 (138)
                      .++.++++|+.|++++.++++       +.|++||++|..
T Consensus        77 ~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~iD~lvnnAG~~  116 (267)
T 3u5t_A           77 GKALTAQADVSDPAAVRRLFATAEEAFGGVDVLVNNAGIM  116 (267)
T ss_dssp             CCEEEEECCTTCHHHHHHHHHHHHHHHSCEEEEEECCCCC
T ss_pred             CeEEEEEcCCCCHHHHHHHHHHHHHHcCCCCEEEECCCCC
Confidence            467889999999999999987       579999999854

>2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta, oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB: 3o4r_A*

Probab=88.92  E-value=0.42  Score=35.89  Aligned_cols=32  Identities=6%  Similarity=-0.008  Sum_probs=28.0

Q ss_pred             CCcceEEeeCCCHHHHHHHHh-------cCcEEEecCCC
Q psy12849         30 RTNRTTVVNTINESSILIMAK-------KCRVILNCVGP   61 (138)
Q Consensus        30 ~~~~~~~~D~~d~~~L~~~~~-------~~dvVIn~~GP   61 (138)
                      .++.++.+|+.|++++.++++       +.|++||++|.
T Consensus        63 ~~~~~~~~D~~~~~~~~~~~~~~~~~~g~iD~lv~~Ag~  101 (260)
T 2zat_A           63 LSVTGTVCHVGKAEDRERLVAMAVNLHGGVDILVSNAAV  101 (260)
T ss_dssp             CCEEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred             CceEEEEccCCCHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence            357788999999999998887       78999999984

>1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET: NAP; 1.80A {Mus musculus} SCOP: c.2.1.2

Probab=88.91  E-value=0.95  Score=33.19  Aligned_cols=31  Identities=6%  Similarity=-0.076  Sum_probs=27.3

Q ss_pred             CcceEEeeCCCHHHHHHHHhc---CcEEEecCCC
Q psy12849         31 TNRTTVVNTINESSILIMAKK---CRVILNCVGP   61 (138)
Q Consensus        31 ~~~~~~~D~~d~~~L~~~~~~---~dvVIn~~GP   61 (138)
                      ..+++.+|+.|++++.+++++   .|+|||++|.
T Consensus        53 ~~~~~~~D~~~~~~~~~~~~~~~~id~vi~~Ag~   86 (244)
T 1cyd_A           53 GIEPVCVDLGDWDATEKALGGIGPVDLLVNNAAL   86 (244)
T ss_dssp             TCEEEECCTTCHHHHHHHHTTCCCCSEEEECCCC
T ss_pred             CCCcEEecCCCHHHHHHHHHHcCCCCEEEECCcc
Confidence            567789999999999999985   6999999993

>1h5q_A NADP-dependent mannitol dehydrogenase; oxidoreductase, mannitol metabolism; HET: NAP; 1.50A {Agaricus bisporus} SCOP: c.2.1.2

Probab=88.88  E-value=0.33  Score=36.14  Aligned_cols=33  Identities=6%  Similarity=0.048  Sum_probs=28.5

Q ss_pred             CCcceEEeeCCCHHHHHHHHhc-------CcEEEecCCCc
Q psy12849         30 RTNRTTVVNTINESSILIMAKK-------CRVILNCVGPY   62 (138)
Q Consensus        30 ~~~~~~~~D~~d~~~L~~~~~~-------~dvVIn~~GPf   62 (138)
                      .++.++.+|+.|++++.+++++       .|++||++|..
T Consensus        64 ~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id~li~~Ag~~  103 (265)
T 1h5q_A           64 VKTKAYQCDVSNTDIVTKTIQQIDADLGPISGLIANAGVS  103 (265)
T ss_dssp             CCEEEEECCTTCHHHHHHHHHHHHHHSCSEEEEEECCCCC
T ss_pred             CeeEEEEeeCCCHHHHHHHHHHHHHhcCCCCEEEECCCcC
Confidence            3678899999999999988875       79999999854

>3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti}

Probab=88.88  E-value=0.36  Score=36.96  Aligned_cols=33  Identities=21%  Similarity=0.341  Sum_probs=28.5

Q ss_pred             CCcceEEeeCCCHHHHHHHHh-------cCcEEEecCCCc
Q psy12849         30 RTNRTTVVNTINESSILIMAK-------KCRVILNCVGPY   62 (138)
Q Consensus        30 ~~~~~~~~D~~d~~~L~~~~~-------~~dvVIn~~GPf   62 (138)
                      .++.++.+|+.|++++.++++       +.|++||++|..
T Consensus        53 ~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~lVnnAG~~   92 (264)
T 3tfo_A           53 GTALAQVLDVTDRHSVAAFAQAAVDTWGRIDVLVNNAGVM   92 (264)
T ss_dssp             CEEEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEECCCCC
T ss_pred             CcEEEEEcCCCCHHHHHHHHHHHHHHcCCCCEEEECCCCC
Confidence            357788999999999999887       679999999854

>3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2

Probab=88.88  E-value=0.36  Score=36.09  Aligned_cols=32  Identities=6%  Similarity=0.082  Sum_probs=28.2

Q ss_pred             CcceEEeeCCCHHHHHHHHhc-------CcEEEecCCCc
Q psy12849         31 TNRTTVVNTINESSILIMAKK-------CRVILNCVGPY   62 (138)
Q Consensus        31 ~~~~~~~D~~d~~~L~~~~~~-------~dvVIn~~GPf   62 (138)
                      ++.++.+|+.|++++.++++.       .|++||++|..
T Consensus        65 ~~~~~~~Dv~~~~~v~~~~~~~~~~~g~id~lv~nAg~~  103 (271)
T 3ek2_A           65 SELVFPCDVADDAQIDALFASLKTHWDSLDGLVHSIGFA  103 (271)
T ss_dssp             CCCEEECCTTCHHHHHHHHHHHHHHCSCEEEEEECCCCC
T ss_pred             CcEEEECCCCCHHHHHHHHHHHHHHcCCCCEEEECCccC
Confidence            578999999999999999984       59999999854

>4iin_A 3-ketoacyl-acyl carrier protein reductase (FABG); structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.40A {Helicobacter pylori} PDB: 4ijk_A

Probab=88.85  E-value=0.46  Score=35.99  Aligned_cols=33  Identities=12%  Similarity=0.123  Sum_probs=29.2

Q ss_pred             CCcceEEeeCCCHHHHHHHHh-------cCcEEEecCCCc
Q psy12849         30 RTNRTTVVNTINESSILIMAK-------KCRVILNCVGPY   62 (138)
Q Consensus        30 ~~~~~~~~D~~d~~~L~~~~~-------~~dvVIn~~GPf   62 (138)
                      .++.++.+|+.|++++.++++       +.|++||++|..
T Consensus        79 ~~~~~~~~D~~~~~~v~~~~~~~~~~~g~id~li~nAg~~  118 (271)
T 4iin_A           79 YKAAVIKFDAASESDFIEAIQTIVQSDGGLSYLVNNAGVV  118 (271)
T ss_dssp             CCEEEEECCTTCHHHHHHHHHHHHHHHSSCCEEEECCCCC
T ss_pred             CceEEEECCCCCHHHHHHHHHHHHHhcCCCCEEEECCCcC
Confidence            468899999999999999887       689999999964

>3ko8_A NAD-dependent epimerase/dehydratase; isomerase, UDP-galactose 4-epimerase; HET: NAD; 1.80A {Pyrobaculum calidifontis} SCOP: c.2.1.0 PDB: 3icp_A* 3aw9_A*

Probab=88.82  E-value=0.21  Score=38.08  Aligned_cols=50  Identities=12%  Similarity=-0.061  Sum_probs=38.8

Q ss_pred             CCcceEEeeCCCHHHHHHHHhcCcEEEecCCCccch----------------hHHHHHHHHHcCC-Cee
Q psy12849         30 RTNRTTVVNTINESSILIMAKKCRVILNCVGPYTWY----------------GEAVVKACIEAKT-HHV   81 (138)
Q Consensus        30 ~~~~~~~~D~~d~~~L~~~~~~~dvVIn~~GPf~~~----------------~~~v~~Aci~~g~-hYv   81 (138)
                      ..++++..|+.|++ +.+.+++ |+||||+|+....                ...++++|.+.|+ ++|
T Consensus        43 ~~~~~~~~Dl~d~~-~~~~~~~-d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~iv  109 (312)
T 3ko8_A           43 PSAELHVRDLKDYS-WGAGIKG-DVVFHFAANPEVRLSTTEPIVHFNENVVATFNVLEWARQTGVRTVV  109 (312)
T ss_dssp             TTSEEECCCTTSTT-TTTTCCC-SEEEECCSSCSSSGGGSCHHHHHHHHHHHHHHHHHHHHHHTCCEEE
T ss_pred             CCceEEECccccHH-HHhhcCC-CEEEECCCCCCchhhhhCHHHHHHHHHHHHHHHHHHHHHcCCCEEE
Confidence            46788999999998 9988888 9999999953210                1368899999887 444

>3v5n_A Oxidoreductase; structural genomics, PSI-biology, protein structure initiati nysgrc, NEW YORK structural genomics research consortium; 2.80A {Sinorhizobium meliloti}

Probab=88.79  E-value=1.8  Score=35.20  Aligned_cols=69  Identities=14%  Similarity=0.075  Sum_probs=47.4

Q ss_pred             cCcEEEecCCCccchhHHHHHHHHHcCCCeee---CCCChHHHHHHHHHhHHHHHhCCCEEEeCCCCccchHhHHHHH
Q psy12849         51 KCRVILNCVGPYTWYGEAVVKACIEAKTHHVD---ITGEPYFMEYMQYEYNTRAQESEVCVVSACGIETLPIDMGVLM  125 (138)
Q Consensus        51 ~~dvVIn~~GPf~~~~~~v~~Aci~~g~hYvD---isge~~~~~~~~~~~~~~A~~~gv~iv~~~G~d~~p~dl~~~~  125 (138)
                      +.|+|+-|. |-..+ .+++++|+++|.|.+=   ++-...-.+    ++-+.|+++|+.+..+.-+-..|.-..+..
T Consensus       110 ~vD~V~I~t-p~~~H-~~~~~~al~aGkhVl~EKPla~~~~ea~----~l~~~a~~~g~~~~v~~~~R~~p~~~~~k~  181 (417)
T 3v5n_A          110 GIEAVAIVT-PNHVH-YAAAKEFLKRGIHVICDKPLTSTLADAK----KLKKAADESDALFVLTHNYTGYPMVRQARE  181 (417)
T ss_dssp             CCSEEEECS-CTTSH-HHHHHHHHTTTCEEEEESSSCSSHHHHH----HHHHHHHHCSSCEEEECGGGGSHHHHHHHH
T ss_pred             CCcEEEECC-CcHHH-HHHHHHHHhCCCeEEEECCCcCCHHHHH----HHHHHHHHcCCEEEEEecccCCHHHHHHHH
Confidence            389999999 55555 4789999999999763   344433333    344678999998877766555565544443

>3nrc_A Enoyl-[acyl-carrier-protein] reductase (NADH); rossmann fold, NADH BI oxidoreductase; HET: NAD TCL; 2.10A {Francisella tularensis subsp} PDB: 3uic_A* 2jjy_A*

Probab=88.78  E-value=0.32  Score=37.15  Aligned_cols=34  Identities=9%  Similarity=0.079  Sum_probs=29.1

Q ss_pred             CCcceEEeeCCCHHHHHHHHhc-------CcEEEecCCCcc
Q psy12849         30 RTNRTTVVNTINESSILIMAKK-------CRVILNCVGPYT   63 (138)
Q Consensus        30 ~~~~~~~~D~~d~~~L~~~~~~-------~dvVIn~~GPf~   63 (138)
                      .++.++.+|+.|++++.++++.       .|++||++|...
T Consensus        75 ~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~id~li~nAg~~~  115 (280)
T 3nrc_A           75 NPAAVLPCDVISDQEIKDLFVELGKVWDGLDAIVHSIAFAP  115 (280)
T ss_dssp             CCSEEEECCTTCHHHHHHHHHHHHHHCSSCCEEEECCCCCC
T ss_pred             CCceEEEeecCCHHHHHHHHHHHHHHcCCCCEEEECCccCC
Confidence            3578999999999999999875       499999999653

>1xea_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, protein structure initiative, NYSGXRC, VCA1048, GFO/IDH/MOCA family oxidoreductase; 2.65A {Vibrio cholerae} SCOP: c.2.1.3 d.81.1.5

Probab=88.77  E-value=2.6  Score=32.80  Aligned_cols=68  Identities=6%  Similarity=0.000  Sum_probs=46.6

Q ss_pred             hcCcEEEecCCCccchhHHHHHHHHHcCCCee-e--CCCChHHHHHHHHHhHHHHHhCCCEEEeCCCCccchHhHHH
Q psy12849         50 KKCRVILNCVGPYTWYGEAVVKACIEAKTHHV-D--ITGEPYFMEYMQYEYNTRAQESEVCVVSACGIETLPIDMGV  123 (138)
Q Consensus        50 ~~~dvVIn~~GPf~~~~~~v~~Aci~~g~hYv-D--isge~~~~~~~~~~~~~~A~~~gv~iv~~~G~d~~p~dl~~  123 (138)
                      .+.|+|+-|+.| ..+ .+++..|+++|.|.+ +  ++-...-.+    ++.+.|+++|+.++.+.-+-..|.-..+
T Consensus        62 ~~~D~V~i~tp~-~~h-~~~~~~al~~Gk~V~~EKP~~~~~~~~~----~l~~~a~~~g~~~~v~~~~r~~p~~~~~  132 (323)
T 1xea_A           62 YGVDAVMIHAAT-DVH-STLAAFFLHLGIPTFVDKPLAASAQECE----NLYELAEKHHQPLYVGFNRRHIPLYNQH  132 (323)
T ss_dssp             GCCSEEEECSCG-GGH-HHHHHHHHHTTCCEEEESCSCSSHHHHH----HHHHHHHHTTCCEEEECGGGCCHHHHHH
T ss_pred             cCCCEEEEECCc-hhH-HHHHHHHHHCCCeEEEeCCCcCCHHHHH----HHHHHHHhcCCeEEEeeccccCHHHHHH
Confidence            579999999954 444 478889999999965 3  333333333    4457788999998887665556654444

>3ctm_A Carbonyl reductase; alcohol dehydrogenase, short-chain dehydrogenases/reductases (SDR), X-RAY crystallography, oxidoreductase; 2.69A {Candida parapsilosis}

Probab=88.77  E-value=0.33  Score=36.69  Aligned_cols=33  Identities=12%  Similarity=0.075  Sum_probs=28.5

Q ss_pred             CCcceEEeeCCCHHHHHHHHhc-------CcEEEecCCCc
Q psy12849         30 RTNRTTVVNTINESSILIMAKK-------CRVILNCVGPY   62 (138)
Q Consensus        30 ~~~~~~~~D~~d~~~L~~~~~~-------~dvVIn~~GPf   62 (138)
                      .++.++.+|+.|++++.+++++       .|+|||++|..
T Consensus        83 ~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~id~li~~Ag~~  122 (279)
T 3ctm_A           83 VHSKAYKCNISDPKSVEETISQQEKDFGTIDVFVANAGVT  122 (279)
T ss_dssp             SCEEEEECCTTCHHHHHHHHHHHHHHHSCCSEEEECGGGS
T ss_pred             CcceEEEeecCCHHHHHHHHHHHHHHhCCCCEEEECCccc
Confidence            3578899999999999998876       89999999843

>3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str}

Probab=88.74  E-value=0.36  Score=36.48  Aligned_cols=33  Identities=9%  Similarity=0.143  Sum_probs=28.8

Q ss_pred             CCcceEEeeCCCHHHHHHHHh-------cCcEEEecCCCc
Q psy12849         30 RTNRTTVVNTINESSILIMAK-------KCRVILNCVGPY   62 (138)
Q Consensus        30 ~~~~~~~~D~~d~~~L~~~~~-------~~dvVIn~~GPf   62 (138)
                      .++.++.+|+.|++++.++++       +.|++||++|-.
T Consensus        58 ~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~id~lv~nAg~~   97 (259)
T 3edm_A           58 RSALAIKADLTNAAEVEAAISAAADKFGEIHGLVHVAGGL   97 (259)
T ss_dssp             SCCEEEECCTTCHHHHHHHHHHHHHHHCSEEEEEECCCCC
T ss_pred             CceEEEEcCCCCHHHHHHHHHHHHHHhCCCCEEEECCCcc
Confidence            467899999999999999988       679999999843

>1sby_A Alcohol dehydrogenase; ternary complex, NAD, trifluoroethanol, oxidoreductase; HET: NAD; 1.10A {Scaptodrosophila lebanonensis} SCOP: c.2.1.2 PDB: 1b14_A* 1b15_A* 1a4u_A* 1b2l_A* 1b16_A* 3rj5_A* 3rj9_A* 1mg5_A*

Probab=88.67  E-value=0.28  Score=36.67  Aligned_cols=33  Identities=9%  Similarity=0.056  Sum_probs=27.9

Q ss_pred             CCcceEEeeCCCH-HHHHHHHh-------cCcEEEecCCCc
Q psy12849         30 RTNRTTVVNTINE-SSILIMAK-------KCRVILNCVGPY   62 (138)
Q Consensus        30 ~~~~~~~~D~~d~-~~L~~~~~-------~~dvVIn~~GPf   62 (138)
                      .++.++.+|+.|+ +++.++++       +.|++||++|..
T Consensus        55 ~~~~~~~~D~~~~~~~~~~~~~~~~~~~g~id~lv~~Ag~~   95 (254)
T 1sby_A           55 VNITFHTYDVTVPVAESKKLLKKIFDQLKTVDILINGAGIL   95 (254)
T ss_dssp             SEEEEEECCTTSCHHHHHHHHHHHHHHHSCCCEEEECCCCC
T ss_pred             ceEEEEEEecCCChHHHHHHHHHHHHhcCCCCEEEECCccC
Confidence            3578899999998 88888887       689999999953

>4e3z_A Putative oxidoreductase protein; PSI-biology, structural genomics, protein structure initiati nysgrc,oxidoreductase; 2.00A {Rhizobium etli}

Probab=88.63  E-value=0.39  Score=36.37  Aligned_cols=33  Identities=15%  Similarity=0.062  Sum_probs=28.8

Q ss_pred             CCcceEEeeCCCHHHHHHHHh-------cCcEEEecCCCc
Q psy12849         30 RTNRTTVVNTINESSILIMAK-------KCRVILNCVGPY   62 (138)
Q Consensus        30 ~~~~~~~~D~~d~~~L~~~~~-------~~dvVIn~~GPf   62 (138)
                      .++.++.+|+.|++++.++++       +.|++||++|..
T Consensus        76 ~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~id~li~nAg~~  115 (272)
T 4e3z_A           76 GEAVAIPGDVGNAADIAAMFSAVDRQFGRLDGLVNNAGIV  115 (272)
T ss_dssp             CEEEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEECCCCC
T ss_pred             CcEEEEEcCCCCHHHHHHHHHHHHHhCCCCCEEEECCCCC
Confidence            467899999999999999988       569999999964

>3mz0_A Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; MYO-inositol dehydrogenase, bsidh, oxidoreductase; HET: MSE PGE; 1.54A {Bacillus subtilis} PDB: 3nt2_A* 3nt4_A* 3nt5_A* 3nto_A* 3ntq_A* 3ntr_A*

Probab=88.63  E-value=2.2  Score=33.52  Aligned_cols=73  Identities=7%  Similarity=-0.208  Sum_probs=48.1

Q ss_pred             HHHHHhc--CcEEEecCCCccchhHHHHHHHHHcCCCeee---CCCChHHHHHHHHHhHHHHHhCCCEE-EeCCCCccch
Q psy12849         45 ILIMAKK--CRVILNCVGPYTWYGEAVVKACIEAKTHHVD---ITGEPYFMEYMQYEYNTRAQESEVCV-VSACGIETLP  118 (138)
Q Consensus        45 L~~~~~~--~dvVIn~~GPf~~~~~~v~~Aci~~g~hYvD---isge~~~~~~~~~~~~~~A~~~gv~i-v~~~G~d~~p  118 (138)
                      +.++++.  .|+|+-|. |-..+ .+++..|+++|.|.+=   ++-...-.+    ++-+.|+++|+.+ ..+.-+-..|
T Consensus        58 ~~~ll~~~~~D~V~i~t-p~~~h-~~~~~~al~~Gk~vl~EKP~a~~~~e~~----~l~~~a~~~g~~~~~v~~~~r~~p  131 (344)
T 3mz0_A           58 DDSLLADENVDAVLVTS-WGPAH-ESSVLKAIKAQKYVFCEKPLATTAEGCM----RIVEEEIKVGKRLVQVGFMRRYDS  131 (344)
T ss_dssp             HHHHHHCTTCCEEEECS-CGGGH-HHHHHHHHHTTCEEEECSCSCSSHHHHH----HHHHHHHHHSSCCEEECCGGGGSH
T ss_pred             HHHHhcCCCCCEEEECC-CchhH-HHHHHHHHHCCCcEEEcCCCCCCHHHHH----HHHHHHHHHCCEEEEEecccccCH
Confidence            4556665  89999999 55555 4788999999999763   333433333    4446788889876 5655544455


Q ss_pred             HhHHH
Q psy12849        119 IDMGV  123 (138)
Q Consensus       119 ~dl~~  123 (138)
                      .-..+
T Consensus       132 ~~~~~  136 (344)
T 3mz0_A          132 GYVQL  136 (344)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            44443

>3tsc_A Putative oxidoreductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp} SCOP: c.2.1.0

Probab=88.61  E-value=0.44  Score=36.25  Aligned_cols=34  Identities=18%  Similarity=0.179  Sum_probs=29.4

Q ss_pred             CCcceEEeeCCCHHHHHHHHhc-------CcEEEecCCCcc
Q psy12849         30 RTNRTTVVNTINESSILIMAKK-------CRVILNCVGPYT   63 (138)
Q Consensus        30 ~~~~~~~~D~~d~~~L~~~~~~-------~dvVIn~~GPf~   63 (138)
                      .++.++.+|+.|++++.+++++       .|++||++|...
T Consensus        73 ~~~~~~~~D~~~~~~v~~~~~~~~~~~g~id~lvnnAg~~~  113 (277)
T 3tsc_A           73 RRIVAAVVDTRDFDRLRKVVDDGVAALGRLDIIVANAGVAA  113 (277)
T ss_dssp             CCEEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEECCCCCC
T ss_pred             CeEEEEECCCCCHHHHHHHHHHHHHHcCCCCEEEECCCCCC
Confidence            4678899999999999999874       799999998643

>1mxh_A Pteridine reductase 2; SDR topology, protein-substrate complex, oxidoreductase; HET: NAP DHF; 2.20A {Trypanosoma cruzi} SCOP: c.2.1.2 PDB: 1mxf_A*

Probab=88.59  E-value=0.69  Score=34.91  Aligned_cols=32  Identities=9%  Similarity=0.080  Sum_probs=27.9

Q ss_pred             CCcceEEeeCCCH----HHHHHHHh-------cCcEEEecCCC
Q psy12849         30 RTNRTTVVNTINE----SSILIMAK-------KCRVILNCVGP   61 (138)
Q Consensus        30 ~~~~~~~~D~~d~----~~L~~~~~-------~~dvVIn~~GP   61 (138)
                      .++.++.+|+.|+    +++.++++       +.|++||++|-
T Consensus        62 ~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~~~g~id~lv~nAg~  104 (276)
T 1mxh_A           62 GSAVLCKGDLSLSSSLLDCCEDIIDCSFRAFGRCDVLVNNASA  104 (276)
T ss_dssp             TCEEEEECCCSSSTTHHHHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred             CceEEEeccCCCccccHHHHHHHHHHHHHhcCCCCEEEECCCC
Confidence            3678899999999    99998887       68999999994

>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris}

Probab=88.58  E-value=0.29  Score=36.92  Aligned_cols=33  Identities=15%  Similarity=0.142  Sum_probs=28.8

Q ss_pred             CCcceEEeeCCCHHHHHHHHh------cCcEEEecCCCc
Q psy12849         30 RTNRTTVVNTINESSILIMAK------KCRVILNCVGPY   62 (138)
Q Consensus        30 ~~~~~~~~D~~d~~~L~~~~~------~~dvVIn~~GPf   62 (138)
                      .++.++.+|+.|++++.++++      +.|++||++|..
T Consensus        56 ~~~~~~~~Dv~~~~~v~~~~~~~~~~g~id~lv~nAg~~   94 (252)
T 3h7a_A           56 GRIVARSLDARNEDEVTAFLNAADAHAPLEVTIFNVGAN   94 (252)
T ss_dssp             CEEEEEECCTTCHHHHHHHHHHHHHHSCEEEEEECCCCC
T ss_pred             CeEEEEECcCCCHHHHHHHHHHHHhhCCceEEEECCCcC
Confidence            367899999999999999998      469999999954

>3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron}

Probab=88.54  E-value=0.43  Score=35.96  Aligned_cols=33  Identities=6%  Similarity=0.085  Sum_probs=29.0

Q ss_pred             CCcceEEeeCCCHHHHHHHHh-------cCcEEEecCCCc
Q psy12849         30 RTNRTTVVNTINESSILIMAK-------KCRVILNCVGPY   62 (138)
Q Consensus        30 ~~~~~~~~D~~d~~~L~~~~~-------~~dvVIn~~GPf   62 (138)
                      .++.++.+|+.|++++.++++       +.|++||++|.+
T Consensus        59 ~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iD~lvnnAg~~   98 (250)
T 3nyw_A           59 QEPIVLPLDITDCTKADTEIKDIHQKYGAVDILVNAAAMF   98 (250)
T ss_dssp             CCCEEEECCTTCHHHHHHHHHHHHHHHCCEEEEEECCCCC
T ss_pred             CcceEEeccCCCHHHHHHHHHHHHHhcCCCCEEEECCCcC
Confidence            578899999999999999887       479999999964

>4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.50A {Sinorhizobium meliloti}

Probab=88.49  E-value=0.28  Score=37.75  Aligned_cols=32  Identities=13%  Similarity=0.201  Sum_probs=27.4

Q ss_pred             CcceEEeeCCCHHHHHHHHhc-------CcEEEecCCCc
Q psy12849         31 TNRTTVVNTINESSILIMAKK-------CRVILNCVGPY   62 (138)
Q Consensus        31 ~~~~~~~D~~d~~~L~~~~~~-------~dvVIn~~GPf   62 (138)
                      .+.++++|+.|++++.++++.       .|++||++|..
T Consensus        84 ~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~lvnnAG~~  122 (281)
T 4dry_A           84 IVRAVVCDVGDPDQVAALFAAVRAEFARLDLLVNNAGSN  122 (281)
T ss_dssp             CEEEEECCTTCHHHHHHHHHHHHHHHSCCSEEEECCCCC
T ss_pred             eEEEEEcCCCCHHHHHHHHHHHHHHcCCCCEEEECCCCC
Confidence            358899999999999998874       59999999854

>1xhl_A Short-chain dehydrogenase/reductase family member putative tropinone reductase-II...; parallel beta-sheet of seven strands in the order 3214567; HET: NDP TNE; 2.40A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=88.49  E-value=0.39  Score=37.25  Aligned_cols=32  Identities=16%  Similarity=0.176  Sum_probs=28.2

Q ss_pred             CcceEEeeCCCHHHHHHHHh-------cCcEEEecCCCc
Q psy12849         31 TNRTTVVNTINESSILIMAK-------KCRVILNCVGPY   62 (138)
Q Consensus        31 ~~~~~~~D~~d~~~L~~~~~-------~~dvVIn~~GPf   62 (138)
                      ++.++.+|+.|++++.++++       +.|++||++|..
T Consensus        79 ~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~lvnnAG~~  117 (297)
T 1xhl_A           79 KINAVVADVTEASGQDDIINTTLAKFGKIDILVNNAGAN  117 (297)
T ss_dssp             GEEEEECCTTSHHHHHHHHHHHHHHHSCCCEEEECCCCC
T ss_pred             eEEEEecCCCCHHHHHHHHHHHHHhcCCCCEEEECCCcC
Confidence            57889999999999999887       689999999853

>3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A*

Probab=88.46  E-value=0.64  Score=34.89  Aligned_cols=33  Identities=12%  Similarity=0.094  Sum_probs=28.9

Q ss_pred             CCcceEEeeCCCHHHHHHHHh-------cCcEEEecCCCc
Q psy12849         30 RTNRTTVVNTINESSILIMAK-------KCRVILNCVGPY   62 (138)
Q Consensus        30 ~~~~~~~~D~~d~~~L~~~~~-------~~dvVIn~~GPf   62 (138)
                      .++.++++|+.|++++.++++       ..|++||++|..
T Consensus        59 ~~~~~~~~D~~~~~~v~~~~~~~~~~~g~id~li~~Ag~~   98 (266)
T 3oig_A           59 NDSIILPCDVTNDAEIETCFASIKEQVGVIHGIAHCIAFA   98 (266)
T ss_dssp             CCCEEEECCCSSSHHHHHHHHHHHHHHSCCCEEEECCCCC
T ss_pred             CCceEEeCCCCCHHHHHHHHHHHHHHhCCeeEEEEccccc
Confidence            478999999999999999887       469999999854

>2a4k_A 3-oxoacyl-[acyl carrier protein] reductase; reductase,hyperthermophIle, structural genomics, PSI, protei structure initiative; 2.30A {Thermus thermophilus} SCOP: c.2.1.2

Probab=88.46  E-value=0.27  Score=37.47  Aligned_cols=33  Identities=6%  Similarity=0.047  Sum_probs=28.4

Q ss_pred             CCcceEEeeCCCHHHHHHHHhc-------CcEEEecCCCc
Q psy12849         30 RTNRTTVVNTINESSILIMAKK-------CRVILNCVGPY   62 (138)
Q Consensus        30 ~~~~~~~~D~~d~~~L~~~~~~-------~dvVIn~~GPf   62 (138)
                      .++.++.+|+.|++++.+++++       .|++||++|..
T Consensus        52 ~~~~~~~~D~~~~~~v~~~~~~~~~~~g~iD~lvnnAg~~   91 (263)
T 2a4k_A           52 AEAIAVVADVSDPKAVEAVFAEALEEFGRLHGVAHFAGVA   91 (263)
T ss_dssp             SSEEEEECCTTSHHHHHHHHHHHHHHHSCCCEEEEGGGGT
T ss_pred             CceEEEEcCCCCHHHHHHHHHHHHHHcCCCcEEEECCCCC
Confidence            4678899999999999998885       59999999854

>2p91_A Enoyl-[acyl-carrier-protein] reductase [NADH]; NADH-dependent enoyl-ACP reductase, FABI, aquifex A VF5, structural genomics, PSI; 2.00A {Aquifex aeolicus}

Probab=88.44  E-value=0.49  Score=36.11  Aligned_cols=32  Identities=9%  Similarity=0.128  Sum_probs=27.7

Q ss_pred             CcceEEeeCCCHHHHHHHHh-------cCcEEEecCCCc
Q psy12849         31 TNRTTVVNTINESSILIMAK-------KCRVILNCVGPY   62 (138)
Q Consensus        31 ~~~~~~~D~~d~~~L~~~~~-------~~dvVIn~~GPf   62 (138)
                      ++.++.+|+.|++++.++++       +.|++||++|..
T Consensus        72 ~~~~~~~Dl~~~~~v~~~~~~~~~~~g~iD~lv~~Ag~~  110 (285)
T 2p91_A           72 SDLVVKCDVSLDEDIKNLKKFLEENWGSLDIIVHSIAYA  110 (285)
T ss_dssp             CCCEEECCTTCHHHHHHHHHHHHHHTSCCCEEEECCCCC
T ss_pred             CeEEEEcCCCCHHHHHHHHHHHHHHcCCCCEEEECCCCC
Confidence            36789999999999999887       579999999854

>2wyu_A Enoyl-[acyl carrier protein] reductase; oxidoreductase, fatty acid biosynthesis, oxidation reduction; 1.50A {Thermus thermophilus} PDB: 1ulu_A 2wyv_A* 2wyw_A* 2yw9_A*

Probab=88.43  E-value=0.4  Score=36.17  Aligned_cols=32  Identities=0%  Similarity=-0.056  Sum_probs=27.8

Q ss_pred             CcceEEeeCCCHHHHHHHHh-------cCcEEEecCCCc
Q psy12849         31 TNRTTVVNTINESSILIMAK-------KCRVILNCVGPY   62 (138)
Q Consensus        31 ~~~~~~~D~~d~~~L~~~~~-------~~dvVIn~~GPf   62 (138)
                      .+.++.+|+.|++++.++++       +.|++||++|-.
T Consensus        59 ~~~~~~~D~~~~~~v~~~~~~~~~~~g~iD~lv~~Ag~~   97 (261)
T 2wyu_A           59 GALLFRADVTQDEELDALFAGVKEAFGGLDYLVHAIAFA   97 (261)
T ss_dssp             CCEEEECCTTCHHHHHHHHHHHHHHHSSEEEEEECCCCC
T ss_pred             CcEEEECCCCCHHHHHHHHHHHHHHcCCCCEEEECCCCC
Confidence            36789999999999999988       579999999843

>1uay_A Type II 3-hydroxyacyl-COA dehydrogenase; beta oxidation, fatty acid, structural genomi structural genomics/proteomics initiative, RSGI; HET: ADN; 1.40A {Thermus thermophilus} SCOP: c.2.1.2

Probab=88.41  E-value=0.4  Score=35.06  Aligned_cols=33  Identities=6%  Similarity=-0.062  Sum_probs=28.6

Q ss_pred             CCcceEEeeCCCHHHHHHHHh------cCcEEEecCCCc
Q psy12849         30 RTNRTTVVNTINESSILIMAK------KCRVILNCVGPY   62 (138)
Q Consensus        30 ~~~~~~~~D~~d~~~L~~~~~------~~dvVIn~~GPf   62 (138)
                      .++.++.+|+.|++++.++++      +.|++||++|..
T Consensus        39 ~~~~~~~~D~~~~~~~~~~~~~~~~~~~~d~li~~ag~~   77 (242)
T 1uay_A           39 EDLIYVEGDVTREEDVRRAVARAQEEAPLFAVVSAAGVG   77 (242)
T ss_dssp             SSSEEEECCTTCHHHHHHHHHHHHHHSCEEEEEECCCCC
T ss_pred             cceEEEeCCCCCHHHHHHHHHHHHhhCCceEEEEccccc
Confidence            356789999999999999998      789999999853

>3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; HET: NAP; 1.93A {Sinorhizobium meliloti}

Probab=88.41  E-value=0.35  Score=37.24  Aligned_cols=33  Identities=9%  Similarity=0.025  Sum_probs=29.0

Q ss_pred             CCcceEEeeCCCHHHHHHHHh-------cCcEEEecCCCc
Q psy12849         30 RTNRTTVVNTINESSILIMAK-------KCRVILNCVGPY   62 (138)
Q Consensus        30 ~~~~~~~~D~~d~~~L~~~~~-------~~dvVIn~~GPf   62 (138)
                      .++.++.+|+.|++++.++++       +.|++||++|.+
T Consensus        57 ~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iD~lvnnAg~~   96 (280)
T 3tox_A           57 GEAAALAGDVGDEALHEALVELAVRRFGGLDTAFNNAGAL   96 (280)
T ss_dssp             CCEEECCCCTTCHHHHHHHHHHHHHHHSCCCEEEECCCCC
T ss_pred             CcEEEEECCCCCHHHHHHHHHHHHHHcCCCCEEEECCCCC
Confidence            467889999999999999988       689999999954

>2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein] reductase; RHLG-NADP complex, oxidoreductase; HET: NAP; 2.30A {Pseudomonas aeruginosa}

Probab=88.31  E-value=0.31  Score=37.36  Aligned_cols=32  Identities=13%  Similarity=0.209  Sum_probs=28.0

Q ss_pred             CcceEEeeCCCHHHHHHHHh-------cCcEEEecCCCc
Q psy12849         31 TNRTTVVNTINESSILIMAK-------KCRVILNCVGPY   62 (138)
Q Consensus        31 ~~~~~~~D~~d~~~L~~~~~-------~~dvVIn~~GPf   62 (138)
                      ++.++.+|+.|++++.++++       +.|++||++|..
T Consensus        78 ~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~lvnnAg~~  116 (276)
T 2b4q_A           78 DCQAIPADLSSEAGARRLAQALGELSARLDILVNNAGTS  116 (276)
T ss_dssp             CEEECCCCTTSHHHHHHHHHHHHHHCSCCSEEEECCCCC
T ss_pred             ceEEEEeeCCCHHHHHHHHHHHHHhcCCCCEEEECCCCC
Confidence            67788999999999999887       589999999943

>1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5

Probab=88.27  E-value=0.13  Score=40.13  Aligned_cols=73  Identities=11%  Similarity=0.066  Sum_probs=45.2

Q ss_pred             HhcCcEEEecCCCccchh---HHH-HHHHHHcCCCeeeCCCChHHHHHHHHHhHHHHHhCCCEEEeCCCCccchHhHHHH
Q psy12849         49 AKKCRVILNCVGPYTWYG---EAV-VKACIEAKTHHVDITGEPYFMEYMQYEYNTRAQESEVCVVSACGIETLPIDMGVL  124 (138)
Q Consensus        49 ~~~~dvVIn~~GPf~~~~---~~v-~~Aci~~g~hYvDisge~~~~~~~~~~~~~~A~~~gv~iv~~~G~d~~p~dl~~~  124 (138)
                      +.++|++|||+|......   .++ -..+++.|...+|+...+..+     .+-++|+++|..+++|.       .++..
T Consensus       191 ~~~~DilVn~ag~~~~~~~~~~~~~~~~~l~~~~~v~Dv~y~p~~t-----~ll~~a~~~G~~~~~Gl-------~mL~~  258 (287)
T 1nvt_A          191 LDGVDIIINATPIGMYPNIDVEPIVKAEKLREDMVVMDLIYNPLET-----VLLKEAKKVNAKTINGL-------GMLIY  258 (287)
T ss_dssp             CTTCCEEEECSCTTCTTCCSSCCSSCSTTCCSSSEEEECCCSSSSC-----HHHHHHHTTTCEEECTH-------HHHHH
T ss_pred             hCCCCEEEECCCCCCCCCCCCCCCCCHHHcCCCCEEEEeeeCCccC-----HHHHHHHHCCCEEeCcH-------HHHHH
Confidence            457899999997543210   122 234567889999998754322     23457889999877653       34455


Q ss_pred             HHHHHhhhh
Q psy12849        125 MLQDSFEGH  133 (138)
Q Consensus       125 ~~~~~~~~~  133 (138)
                      ....+|+.-
T Consensus       259 Qa~~af~~w  267 (287)
T 1nvt_A          259 QGAVAFKIW  267 (287)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            555555443

>3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural genomics, PSI-2, protein structure initiative; 2.30A {Aeromonas hydrophila subsp} SCOP: c.2.1.0

Probab=88.22  E-value=0.37  Score=35.95  Aligned_cols=32  Identities=13%  Similarity=0.196  Sum_probs=27.9

Q ss_pred             CcceEEeeCCCHHHHHHHHh-------cCcEEEecCCCc
Q psy12849         31 TNRTTVVNTINESSILIMAK-------KCRVILNCVGPY   62 (138)
Q Consensus        31 ~~~~~~~D~~d~~~L~~~~~-------~~dvVIn~~GPf   62 (138)
                      ++.++.+|+.|++++.++++       +.|++||++|..
T Consensus        50 ~~~~~~~D~~~~~~v~~~~~~~~~~~g~id~lvnnAg~~   88 (235)
T 3l6e_A           50 AVIGIVADLAHHEDVDVAFAAAVEWGGLPELVLHCAGTG   88 (235)
T ss_dssp             GEEEEECCTTSHHHHHHHHHHHHHHHCSCSEEEEECCCC
T ss_pred             CceEEECCCCCHHHHHHHHHHHHHhcCCCcEEEECCCCC
Confidence            47889999999999999888       469999999953

>3ngf_A AP endonuclease, family 2; structural genomics, seattle structural genomics center for infectious disease, ssgcid, TIM barrel; 1.80A {Brucella melitensis biovar abortus} SCOP: c.1.15.0

Probab=88.22  E-value=2.4  Score=31.80  Aligned_cols=96  Identities=7%  Similarity=-0.068  Sum_probs=62.5

Q ss_pred             HHHHHHhhhhcCCCCcceEEeeCCCHHHHHHHHhcCcEEEecCC-Cccc--------------------hhHHHHHHHHH
Q psy12849         17 IFLFLQKASWFGVRTNRTTVVNTINESSILIMAKKCRVILNCVG-PYTW--------------------YGEAVVKACIE   75 (138)
Q Consensus        17 ~~~~~~~a~~~~~~~~~~~~~D~~d~~~L~~~~~~~dvVIn~~G-Pf~~--------------------~~~~v~~Aci~   75 (138)
                      +-..++.+.+.|.+.+++..-.-.+.+++.+.++...+-+.+.. |+..                    .-.+.++.|.+
T Consensus        25 ~~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~i~~A~~  104 (269)
T 3ngf_A           25 FLERFRLAAEAGFGGVEFLFPYDFDADVIARELKQHNLTQVLFNMPPGDWAAGERGMAAISGREQEFRDNVDIALHYALA  104 (269)
T ss_dssp             HHHHHHHHHHTTCSEEECSCCTTSCHHHHHHHHHHTTCEEEEEECCCSCTTTTCCBCTTCTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCEEEecCCccCCHHHHHHHHHHcCCcEEEEecCCCccccCCCCcCCCccHHHHHHHHHHHHHHHHHH
Confidence            34466777787776555443334578999999999887666532 4321                    12467888999


Q ss_pred             cCCCeeeC-CCCh---------HHHHHHHHHhHHHHHhCCCEEEeCC
Q psy12849         76 AKTHHVDI-TGEP---------YFMEYMQYEYNTRAQESEVCVVSAC  112 (138)
Q Consensus        76 ~g~hYvDi-sge~---------~~~~~~~~~~~~~A~~~gv~iv~~~  112 (138)
                      .|+.+|=+ +|.+         ....+...++.+.|++.|+++....
T Consensus       105 lGa~~v~~~~g~~~~~~~~~~~~~~~~~l~~l~~~a~~~Gv~l~lE~  151 (269)
T 3ngf_A          105 LDCRTLHAMSGITEGLDRKACEETFIENFRYAADKLAPHGITVLVEP  151 (269)
T ss_dssp             TTCCEEECCBCBCTTSCHHHHHHHHHHHHHHHHHHHGGGTCEEEECC
T ss_pred             cCCCEEEEccCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCEEEEee
Confidence            99999976 4411         1122223466677888999998873

>1jtv_A 17 beta-hydroxysteroid dehydrogenase type 1; steroid hormones, alternative binding mode, oxidoreductase; HET: TES; 1.54A {Homo sapiens} SCOP: c.2.1.2 PDB: 1dht_A* 1equ_A* 1bhs_A* 1i5r_A* 1qyv_A* 1qyw_A* 1qyx_A* 3dey_X* 3dhe_A* 3hb4_X* 3hb5_X* 3klp_X* 3km0_A* 1iol_A* 1fds_A* 1fdt_A* 3klm_X* 1fdw_A* 1fdu_A* 1fdv_A* ...

Probab=88.20  E-value=0.45  Score=37.51  Aligned_cols=32  Identities=13%  Similarity=0.170  Sum_probs=28.7

Q ss_pred             CCcceEEeeCCCHHHHHHHHhc-----CcEEEecCCC
Q psy12849         30 RTNRTTVVNTINESSILIMAKK-----CRVILNCVGP   61 (138)
Q Consensus        30 ~~~~~~~~D~~d~~~L~~~~~~-----~dvVIn~~GP   61 (138)
                      .++.++.+|+.|++++.+++++     .|++||++|-
T Consensus        57 ~~~~~~~~Dv~d~~~v~~~~~~~~~g~iD~lVnnAG~   93 (327)
T 1jtv_A           57 GSLETLQLDVRDSKSVAAARERVTEGRVDVLVCNAGL   93 (327)
T ss_dssp             TSEEEEECCTTCHHHHHHHHHTCTTSCCSEEEECCCC
T ss_pred             CceEEEEecCCCHHHHHHHHHHHhcCCCCEEEECCCc
Confidence            4678899999999999999986     7999999974

>1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to tropine, short-chain dehydrogenase; HET: NAP; 2.40A {Datura stramonium} SCOP: c.2.1.2

Probab=88.17  E-value=0.51  Score=35.88  Aligned_cols=33  Identities=12%  Similarity=0.180  Sum_probs=28.3

Q ss_pred             CCcceEEeeCCCHHHHHHHHh--------cCcEEEecCCCc
Q psy12849         30 RTNRTTVVNTINESSILIMAK--------KCRVILNCVGPY   62 (138)
Q Consensus        30 ~~~~~~~~D~~d~~~L~~~~~--------~~dvVIn~~GPf   62 (138)
                      .++.++++|+.|++++.++++        +.|++||++|..
T Consensus        70 ~~~~~~~~D~~~~~~~~~~~~~~~~~~~g~id~lv~nAg~~  110 (273)
T 1ae1_A           70 LNVEGSVCDLLSRTERDKLMQTVAHVFDGKLNILVNNAGVV  110 (273)
T ss_dssp             CCEEEEECCTTCHHHHHHHHHHHHHHTTSCCCEEEECCCCC
T ss_pred             CceEEEECCCCCHHHHHHHHHHHHHHcCCCCcEEEECCCCC
Confidence            367889999999999998884        689999999964

>3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A*

Probab=88.09  E-value=0.46  Score=36.67  Aligned_cols=33  Identities=9%  Similarity=-0.005  Sum_probs=28.6

Q ss_pred             CCcceEEeeCCCHHHHHHHHh-------cCcEEEecCCCc
Q psy12849         30 RTNRTTVVNTINESSILIMAK-------KCRVILNCVGPY   62 (138)
Q Consensus        30 ~~~~~~~~D~~d~~~L~~~~~-------~~dvVIn~~GPf   62 (138)
                      .++.++++|+.|++++.++++       +.|++||++|..
T Consensus        97 ~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~lvnnAg~~  136 (291)
T 3ijr_A           97 VKCVLLPGDLSDEQHCKDIVQETVRQLGSLNILVNNVAQQ  136 (291)
T ss_dssp             CCEEEEESCTTSHHHHHHHHHHHHHHHSSCCEEEECCCCC
T ss_pred             CcEEEEECCCCCHHHHHHHHHHHHHHcCCCCEEEECCCCc
Confidence            467889999999999999887       579999999853

>3gem_A Short chain dehydrogenase; structural genomics, APC65077, oxidoreductase, PSI-2, protein structure initiative; 1.83A {Pseudomonas syringae PV}

Probab=88.07  E-value=0.52  Score=35.79  Aligned_cols=32  Identities=9%  Similarity=0.130  Sum_probs=28.1

Q ss_pred             cceEEeeCCCHHHHHHHHh-------cCcEEEecCCCcc
Q psy12849         32 NRTTVVNTINESSILIMAK-------KCRVILNCVGPYT   63 (138)
Q Consensus        32 ~~~~~~D~~d~~~L~~~~~-------~~dvVIn~~GPf~   63 (138)
                      +.++.+|+.|++++.++++       +.|++||++|.+.
T Consensus        73 ~~~~~~Dv~~~~~v~~~~~~~~~~~g~iD~lv~nAg~~~  111 (260)
T 3gem_A           73 AVALYGDFSCETGIMAFIDLLKTQTSSLRAVVHNASEWL  111 (260)
T ss_dssp             CEEEECCTTSHHHHHHHHHHHHHHCSCCSEEEECCCCCC
T ss_pred             CeEEECCCCCHHHHHHHHHHHHHhcCCCCEEEECCCccC
Confidence            6789999999999999987       4799999999653

>3ezl_A Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA reductase, oxidoreductase, structural genomics; HET: P4C; 2.25A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0

Probab=88.06  E-value=0.44  Score=35.51  Aligned_cols=33  Identities=15%  Similarity=-0.062  Sum_probs=28.9

Q ss_pred             CCcceEEeeCCCHHHHHHHHh-------cCcEEEecCCCc
Q psy12849         30 RTNRTTVVNTINESSILIMAK-------KCRVILNCVGPY   62 (138)
Q Consensus        30 ~~~~~~~~D~~d~~~L~~~~~-------~~dvVIn~~GPf   62 (138)
                      .++.++.+|+.|++++.++++       +.|++||++|..
T Consensus        63 ~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~id~lv~~Ag~~  102 (256)
T 3ezl_A           63 FDFYASEGNVGDWDSTKQAFDKVKAEVGEIDVLVNNAGIT  102 (256)
T ss_dssp             CCCEEEECCTTCHHHHHHHHHHHHHHTCCEEEEEECCCCC
T ss_pred             CeeEEEecCCCCHHHHHHHHHHHHHhcCCCCEEEECCCCC
Confidence            468899999999999999988       569999999954

>4f6l_B AUSA reductase domain protein; thioester reductase, oxidoreductase; 3.86A {Staphylococcus aureus}

Probab=88.05  E-value=0.14  Score=42.50  Aligned_cols=52  Identities=6%  Similarity=0.111  Sum_probs=38.7

Q ss_pred             CCCcceEEeeCCCHHHHHHHHhcCcEEEecCCCccch-------------hHHHHHHHHHcCCCee
Q psy12849         29 VRTNRTTVVNTINESSILIMAKKCRVILNCVGPYTWY-------------GEAVVKACIEAKTHHV   81 (138)
Q Consensus        29 ~~~~~~~~~D~~d~~~L~~~~~~~dvVIn~~GPf~~~-------------~~~v~~Aci~~g~hYv   81 (138)
                      ..++.++..|+.|++++. ...++|+||||+|+....             ...++++|.+.+.++|
T Consensus       210 ~~~v~~v~~Dl~d~~~l~-~~~~~D~Vih~Aa~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~~~v  274 (508)
T 4f6l_B          210 LSNIEVIVGDFECMDDVV-LPENMDTIIHAGARTDHFGDDDEFEKVNVQGTVDVIRLAQQHHARLI  274 (508)
T ss_dssp             STTEEEEEEBTTBCSSCC-CSSCCSEEEECCCC--------CCHHHHHHHHHHHHHHHHTTTCEEE
T ss_pred             cCceEEEecCCcccccCC-CccCCCEEEECCceecCCCCHHHHhhhHHHHHHHHHHHHHhCCCcEE
Confidence            367899999999988888 778999999999975311             1468888888555443

>1yde_A Retinal dehydrogenase/reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC; 2.40A {Homo sapiens} SCOP: c.2.1.2

Probab=88.03  E-value=0.49  Score=36.05  Aligned_cols=32  Identities=9%  Similarity=0.180  Sum_probs=27.9

Q ss_pred             CcceEEeeCCCHHHHHHHHh-------cCcEEEecCCCc
Q psy12849         31 TNRTTVVNTINESSILIMAK-------KCRVILNCVGPY   62 (138)
Q Consensus        31 ~~~~~~~D~~d~~~L~~~~~-------~~dvVIn~~GPf   62 (138)
                      ++.++++|+.|++++.++++       +.|++||++|..
T Consensus        55 ~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~lv~nAg~~   93 (270)
T 1yde_A           55 GAVFILCDVTQEDDVKTLVSETIRRFGRLDCVVNNAGHH   93 (270)
T ss_dssp             TEEEEECCTTSHHHHHHHHHHHHHHHSCCCEEEECCCCC
T ss_pred             CCeEEEcCCCCHHHHHHHHHHHHHHcCCCCEEEECCCCC
Confidence            46789999999999999887       579999999853

>3vtz_A Glucose 1-dehydrogenase; rossmann fold, oxidoreductase, NAD binding; 2.30A {Thermoplasma volcanium}

Probab=87.97  E-value=0.51  Score=35.97  Aligned_cols=32  Identities=13%  Similarity=0.212  Sum_probs=27.9

Q ss_pred             CcceEEeeCCCHHHHHHHHh-------cCcEEEecCCCc
Q psy12849         31 TNRTTVVNTINESSILIMAK-------KCRVILNCVGPY   62 (138)
Q Consensus        31 ~~~~~~~D~~d~~~L~~~~~-------~~dvVIn~~GPf   62 (138)
                      ....+++|+.|++++.++++       +.|++||++|-.
T Consensus        54 ~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iD~lv~nAg~~   92 (269)
T 3vtz_A           54 VSDHFKIDVTNEEEVKEAVEKTTKKYGRIDILVNNAGIE   92 (269)
T ss_dssp             SSEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEECCCCC
T ss_pred             ceeEEEecCCCHHHHHHHHHHHHHHcCCCCEEEECCCcC
Confidence            56788999999999999988       679999999853

>4h3v_A Oxidoreductase domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.68A {Kribbella flavida}

Probab=87.93  E-value=3.4  Score=32.29  Aligned_cols=77  Identities=13%  Similarity=0.101  Sum_probs=52.8

Q ss_pred             HHHHHh--cCcEEEecCCCccchhHHHHHHHHHcCCCeee---CCCChHHHHHHHHHhHHHHHhCCCEEEeCCCCccchH
Q psy12849         45 ILIMAK--KCRVILNCVGPYTWYGEAVVKACIEAKTHHVD---ITGEPYFMEYMQYEYNTRAQESEVCVVSACGIETLPI  119 (138)
Q Consensus        45 L~~~~~--~~dvVIn~~GPf~~~~~~v~~Aci~~g~hYvD---isge~~~~~~~~~~~~~~A~~~gv~iv~~~G~d~~p~  119 (138)
                      ++++++  +.|+|+-|. |-..+. +++.+|+++|.|-+=   ++-...=.+++. ++-++++++|+.+..+.=+-..|.
T Consensus        67 ~~~ll~~~~iDaV~I~t-P~~~H~-~~~~~al~aGkhVl~EKPla~t~~ea~~l~-~~~~~~~~~g~~~~v~~~~R~~p~  143 (390)
T 4h3v_A           67 WRTLLERDDVQLVDVCT-PGDSHA-EIAIAALEAGKHVLCEKPLANTVAEAEAMA-AAAAKAAAGGIRSMVGFTYRRVPA  143 (390)
T ss_dssp             HHHHTTCTTCSEEEECS-CGGGHH-HHHHHHHHTTCEEEEESSSCSSHHHHHHHH-HHHHHHHHTTCCEEEECGGGGSHH
T ss_pred             HHHHhcCCCCCEEEEeC-ChHHHH-HHHHHHHHcCCCceeecCcccchhHHHHHH-HHHHHHHhcCCceEEEeeeccCch
Confidence            455665  479999999 666664 789999999999763   444444445543 445667889999988776656665


Q ss_pred             hHHHH
Q psy12849        120 DMGVL  124 (138)
Q Consensus       120 dl~~~  124 (138)
                      -..+.
T Consensus       144 ~~~~k  148 (390)
T 4h3v_A          144 IALAR  148 (390)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            54443

>3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A*

Probab=87.85  E-value=0.55  Score=36.29  Aligned_cols=32  Identities=16%  Similarity=0.096  Sum_probs=27.7

Q ss_pred             CcceEEeeCCCHHHHHHHHh-------cCcEEEecCCCc
Q psy12849         31 TNRTTVVNTINESSILIMAK-------KCRVILNCVGPY   62 (138)
Q Consensus        31 ~~~~~~~D~~d~~~L~~~~~-------~~dvVIn~~GPf   62 (138)
                      .+.++++|+.|++++.++++       +.|++||++|-.
T Consensus        81 ~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~lVnnAG~~  119 (296)
T 3k31_A           81 VKLTVPCDVSDAESVDNMFKVLAEEWGSLDFVVHAVAFS  119 (296)
T ss_dssp             CCEEEECCTTCHHHHHHHHHHHHHHHSCCSEEEECCCCC
T ss_pred             CeEEEEcCCCCHHHHHHHHHHHHHHcCCCCEEEECCCcC
Confidence            46789999999999999987       469999999854

>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5}

Probab=87.84  E-value=0.39  Score=36.24  Aligned_cols=32  Identities=19%  Similarity=0.350  Sum_probs=28.4

Q ss_pred             CCcceEEeeCCCHHHHHHHHhc-------CcEEEecCCC
Q psy12849         30 RTNRTTVVNTINESSILIMAKK-------CRVILNCVGP   61 (138)
Q Consensus        30 ~~~~~~~~D~~d~~~L~~~~~~-------~dvVIn~~GP   61 (138)
                      .++.++.+|++|++++.+++++       .|++||++|.
T Consensus        78 ~~~~~~~~D~~~~~~v~~~~~~~~~~~g~id~lv~~Ag~  116 (262)
T 3rkr_A           78 GEAESHACDLSHSDAIAAFATGVLAAHGRCDVLVNNAGV  116 (262)
T ss_dssp             CEEEEEECCTTCHHHHHHHHHHHHHHHSCCSEEEECCCC
T ss_pred             CceeEEEecCCCHHHHHHHHHHHHHhcCCCCEEEECCCc
Confidence            4678999999999999998875       7999999995

>1lc0_A Biliverdin reductase A; oxidoreductase, tetrapyrrole, bIle pigment, heme, bilirubin, NADH; 1.20A {Rattus norvegicus} SCOP: c.2.1.3 d.81.1.4 PDB: 1lc3_A* 1gcu_A 2h63_A*

Probab=87.81  E-value=2.7  Score=32.53  Aligned_cols=69  Identities=13%  Similarity=0.039  Sum_probs=46.5

Q ss_pred             HHHHHHh--cCcEEEecCCCccchhHHHHHHHHHcCCCee-e--CCCChHHHHHHHHHhHHHHHhCCCEEEeCCCCccch
Q psy12849         44 SILIMAK--KCRVILNCVGPYTWYGEAVVKACIEAKTHHV-D--ITGEPYFMEYMQYEYNTRAQESEVCVVSACGIETLP  118 (138)
Q Consensus        44 ~L~~~~~--~~dvVIn~~GPf~~~~~~v~~Aci~~g~hYv-D--isge~~~~~~~~~~~~~~A~~~gv~iv~~~G~d~~p  118 (138)
                      ++.++++  +.|+|+.|. |-..+ .++++.|+++|.|.+ +  ++-...-.+    ++-+.|+++|+.+..+.-.-..|
T Consensus        56 ~~~ell~~~~vD~V~i~t-p~~~H-~~~~~~al~aGkhVl~EKPla~~~~ea~----~l~~~a~~~g~~~~~~~~~r~~p  129 (294)
T 1lc0_A           56 SLEDALRSQEIDVAYICS-ESSSH-EDYIRQFLQAGKHVLVEYPMTLSFAAAQ----ELWELAAQKGRVLHEEHVELLME  129 (294)
T ss_dssp             CHHHHHHCSSEEEEEECS-CGGGH-HHHHHHHHHTTCEEEEESCSCSCHHHHH----HHHHHHHHTTCCEEEECGGGGSH
T ss_pred             CHHHHhcCCCCCEEEEeC-CcHhH-HHHHHHHHHCCCcEEEeCCCCCCHHHHH----HHHHHHHHhCCEEEEEEhHhccH
Confidence            4666776  689999999 54555 478999999999865 3  233333233    44577888998877665544444

>1cf2_P Protein (glyceraldehyde-3-phosphate dehydrogenase); oxydoreductase, oxidoreductase; HET: NAP; 2.10A {Methanothermus fervidus} SCOP: c.2.1.3 d.81.1.1

Probab=87.75  E-value=0.74  Score=37.02  Aligned_cols=40  Identities=15%  Similarity=0.156  Sum_probs=32.9

Q ss_pred             HHHHHhcCcEEEecCCCccchhHHHHHHHHHcCCCeeeCCCC
Q psy12849         45 ILIMAKKCRVILNCVGPYTWYGEAVVKACIEAKTHHVDITGE   86 (138)
Q Consensus        45 L~~~~~~~dvVIn~~GPf~~~~~~v~~Aci~~g~hYvDisge   86 (138)
                      ..+++.++|+|+.|+|++..  ...++.++++|++.||.+++
T Consensus        72 ~~~~~~~vDvV~~atp~~~~--~~~a~~~l~aG~~VId~sp~  111 (337)
T 1cf2_P           72 VDDMLDEADIVIDCTPEGIG--AKNLKMYKEKGIKAIFQGGE  111 (337)
T ss_dssp             HHHHHHTCSEEEECCSTTHH--HHHHHHHHHHTCCEEECTTS
T ss_pred             HHHHhcCCCEEEECCCchhh--HHHHHHHHHcCCEEEEecCC
Confidence            34455799999999987643  46789999999999999987

>3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida}

Probab=87.72  E-value=0.13  Score=40.30  Aligned_cols=70  Identities=10%  Similarity=0.139  Sum_probs=45.1

Q ss_pred             hcCcEEEecCCCccchhH--HHHHHHHHcCCCeeeCCCChHHHHHHHHHhHHHHHhCCCE-EEeCCCCccchHhHHHHHH
Q psy12849         50 KKCRVILNCVGPYTWYGE--AVVKACIEAKTHHVDITGEPYFMEYMQYEYNTRAQESEVC-VVSACGIETLPIDMGVLML  126 (138)
Q Consensus        50 ~~~dvVIn~~GPf~~~~~--~v~~Aci~~g~hYvDisge~~~~~~~~~~~~~~A~~~gv~-iv~~~G~d~~p~dl~~~~~  126 (138)
                      +++|+||||. |....+.  ++-...+..+...+|+.+.|.-+     .|-.+|+++|+. +++|.+       |+.+.+
T Consensus       180 ~~~DivInaT-p~gm~~~~~~i~~~~l~~~~~V~DlvY~P~~T-----~ll~~A~~~G~~~~~~Gl~-------ML~~Qa  246 (272)
T 3pwz_A          180 QSFDIVVNAT-SASLTADLPPLPADVLGEAALAYELAYGKGLT-----PFLRLAREQGQARLADGVG-------MLVEQA  246 (272)
T ss_dssp             CCCSEEEECS-SGGGGTCCCCCCGGGGTTCSEEEESSCSCCSC-----HHHHHHHHHSCCEEECTHH-------HHHHHH
T ss_pred             cCCCEEEECC-CCCCCCCCCCCCHHHhCcCCEEEEeecCCCCC-----HHHHHHHHCCCCEEECCHH-------HHHHHH
Confidence            6799999998 5432221  22234567788889998875433     233568889987 777655       555555


Q ss_pred             HHHhhh
Q psy12849        127 QDSFEG  132 (138)
Q Consensus       127 ~~~~~~  132 (138)
                      +.+|+-
T Consensus       247 ~~~f~l  252 (272)
T 3pwz_A          247 AEAFAW  252 (272)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            555553

>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A

Probab=87.70  E-value=0.81  Score=35.04  Aligned_cols=42  Identities=14%  Similarity=0.329  Sum_probs=34.8

Q ss_pred             CHHHHHHHHhcCcEEEecCCCccchhHHHHHHHHHcCCCeeeC
Q psy12849         41 NESSILIMAKKCRVILNCVGPYTWYGEAVVKACIEAKTHHVDI   83 (138)
Q Consensus        41 d~~~L~~~~~~~dvVIn~~GPf~~~~~~v~~Aci~~g~hYvDi   83 (138)
                      +++.+.++++++|+||+|...+. .-..+-++|.+.|+++|+.
T Consensus       108 ~~~~~~~~~~~~DvVi~~~d~~~-~r~~l~~~~~~~~~p~i~~  149 (251)
T 1zud_1          108 TGEALKDAVARADVVLDCTDNMA-TRQEINAACVALNTPLITA  149 (251)
T ss_dssp             CHHHHHHHHHHCSEEEECCSSHH-HHHHHHHHHHHTTCCEEEE
T ss_pred             CHHHHHHHHhcCCEEEECCCCHH-HHHHHHHHHHHhCCCEEEE
Confidence            45678899999999999996543 4467899999999999884

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*

Probab=87.54  E-value=0.88  Score=34.75  Aligned_cols=42  Identities=14%  Similarity=0.304  Sum_probs=34.2

Q ss_pred             CHHHHHHHHhcCcEEEecCCCccchhHHHHHHHHHcCCCeeeC
Q psy12849         41 NESSILIMAKKCRVILNCVGPYTWYGEAVVKACIEAKTHHVDI   83 (138)
Q Consensus        41 d~~~L~~~~~~~dvVIn~~GPf~~~~~~v~~Aci~~g~hYvDi   83 (138)
                      +++.+.++++++|+||+|.+.+ ..-..+.++|.+.|+++|+.
T Consensus       111 ~~~~~~~~~~~~DvVi~~~d~~-~~~~~l~~~~~~~~~p~i~~  152 (249)
T 1jw9_B          111 DDAELAALIAEHDLVLDCTDNV-AVRNQLNAGCFAAKVPLVSG  152 (249)
T ss_dssp             CHHHHHHHHHTSSEEEECCSSH-HHHHHHHHHHHHHTCCEEEE
T ss_pred             CHhHHHHHHhCCCEEEEeCCCH-HHHHHHHHHHHHcCCCEEEe
Confidence            3467888999999999999654 34467889999999999884

>1qsg_A Enoyl-[acyl-carrier-protein] reductase; enoyl reductase, oxidoreductase; HET: GLC NAD TCL; 1.75A {Escherichia coli} SCOP: c.2.1.2 PDB: 1c14_A* 1i2z_A* 1i30_A* 1lx6_A* 1lxc_A* 1mfp_A* 2fhs_A 1qg6_A* 1dfg_A* 1dfh_A* 1d8a_A* 1dfi_A* 3pje_A* 3pjd_A* 3pjf_A*

Probab=87.51  E-value=0.49  Score=35.64  Aligned_cols=31  Identities=16%  Similarity=0.141  Sum_probs=27.0

Q ss_pred             cceEEeeCCCHHHHHHHHh-------cCcEEEecCCCc
Q psy12849         32 NRTTVVNTINESSILIMAK-------KCRVILNCVGPY   62 (138)
Q Consensus        32 ~~~~~~D~~d~~~L~~~~~-------~~dvVIn~~GPf   62 (138)
                      ..++++|+.|++++.++++       +.|++||++|-.
T Consensus        61 ~~~~~~D~~~~~~v~~~~~~~~~~~g~iD~lv~~Ag~~   98 (265)
T 1qsg_A           61 DIVLQCDVAEDASIDTMFAELGKVWPKFDGFVHSIGFA   98 (265)
T ss_dssp             CCEEECCTTCHHHHHHHHHHHHTTCSSEEEEEECCCCC
T ss_pred             cEEEEccCCCHHHHHHHHHHHHHHcCCCCEEEECCCCC
Confidence            4789999999999999988       569999999853

>3kvo_A Hydroxysteroid dehydrogenase-like protein 2; HSDL2, human hydroxysteroid dehydrogenase like 2, SDHL2, STR genomics, structural genomics consortium; HET: NAP; 2.25A {Homo sapiens}

Probab=87.49  E-value=0.44  Score=38.15  Aligned_cols=33  Identities=12%  Similarity=0.181  Sum_probs=28.7

Q ss_pred             CCcceEEeeCCCHHHHHHHHh-------cCcEEEecCCCc
Q psy12849         30 RTNRTTVVNTINESSILIMAK-------KCRVILNCVGPY   62 (138)
Q Consensus        30 ~~~~~~~~D~~d~~~L~~~~~-------~~dvVIn~~GPf   62 (138)
                      .++.++++|+.|++++.++++       +.|++||++|-.
T Consensus       101 ~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iDilVnnAG~~  140 (346)
T 3kvo_A          101 GKALPCIVDVRDEQQISAAVEKAIKKFGGIDILVNNASAI  140 (346)
T ss_dssp             CEEEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEECCCCC
T ss_pred             CeEEEEEccCCCHHHHHHHHHHHHHHcCCCCEEEECCCCC
Confidence            357889999999999999988       689999999953

>2ph3_A 3-oxoacyl-[acyl carrier protein] reductase; TTHA0415, structural genomics, southea collaboratory for structural genomics, secsg; 1.91A {Thermus thermophilus HB8}

Probab=87.45  E-value=0.68  Score=33.95  Aligned_cols=32  Identities=9%  Similarity=0.057  Sum_probs=27.0

Q ss_pred             Ccce-EEeeCCCHHHHHHHHh-------cCcEEEecCCCc
Q psy12849         31 TNRT-TVVNTINESSILIMAK-------KCRVILNCVGPY   62 (138)
Q Consensus        31 ~~~~-~~~D~~d~~~L~~~~~-------~~dvVIn~~GPf   62 (138)
                      ++.. +.+|+.|++++.++++       +.|+|||++|..
T Consensus        52 ~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d~li~~Ag~~   91 (245)
T 2ph3_A           52 PLVAVLGANLLEAEAATALVHQAAEVLGGLDTLVNNAGIT   91 (245)
T ss_dssp             SCEEEEECCTTSHHHHHHHHHHHHHHHTCCCEEEECCCCC
T ss_pred             ceEEEEeccCCCHHHHHHHHHHHHHhcCCCCEEEECCCCC
Confidence            4555 8899999999998876       689999999854

>2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG, short-chain alcohol reductase, fatty acid biosynthesis, apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2

Probab=87.43  E-value=0.62  Score=35.52  Aligned_cols=33  Identities=9%  Similarity=0.089  Sum_probs=28.5

Q ss_pred             CCcceEEeeCCCHHHHHHHHh-------cCcEEEecCCCc
Q psy12849         30 RTNRTTVVNTINESSILIMAK-------KCRVILNCVGPY   62 (138)
Q Consensus        30 ~~~~~~~~D~~d~~~L~~~~~-------~~dvVIn~~GPf   62 (138)
                      .++.++.+|+.|++++.++++       +.|+|||++|..
T Consensus        93 ~~~~~~~~Dl~d~~~v~~~~~~~~~~~~~id~li~~Ag~~  132 (285)
T 2c07_A           93 YESSGYAGDVSKKEEISEVINKILTEHKNVDILVNNAGIT  132 (285)
T ss_dssp             CCEEEEECCTTCHHHHHHHHHHHHHHCSCCCEEEECCCCC
T ss_pred             CceeEEECCCCCHHHHHHHHHHHHHhcCCCCEEEECCCCC
Confidence            357889999999999999885       579999999854

>2d1y_A Hypothetical protein TT0321; strucrtural genomics, thermus thermophilus HB8, structural genomics, NPPSFA; HET: NAD; 1.65A {Thermus thermophilus} SCOP: c.2.1.2

Probab=87.38  E-value=0.59  Score=35.08  Aligned_cols=30  Identities=13%  Similarity=0.102  Sum_probs=26.4

Q ss_pred             ceEEeeCCCHHHHHHHHh-------cCcEEEecCCCc
Q psy12849         33 RTTVVNTINESSILIMAK-------KCRVILNCVGPY   62 (138)
Q Consensus        33 ~~~~~D~~d~~~L~~~~~-------~~dvVIn~~GPf   62 (138)
                      .++++|+.|++++.++++       +.|++||++|..
T Consensus        52 ~~~~~D~~~~~~~~~~~~~~~~~~g~iD~lv~~Ag~~   88 (256)
T 2d1y_A           52 AFFQVDLEDERERVRFVEEAAYALGRVDVLVNNAAIA   88 (256)
T ss_dssp             EEEECCTTCHHHHHHHHHHHHHHHSCCCEEEECCCCC
T ss_pred             CEEEeeCCCHHHHHHHHHHHHHHcCCCCEEEECCCCC
Confidence            688999999999998887       579999999854

>3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A*

Probab=87.30  E-value=0.56  Score=35.45  Aligned_cols=33  Identities=12%  Similarity=0.192  Sum_probs=28.4

Q ss_pred             CCcceEEeeCCCHHHHHHHHh-------cCcEEEecCCCc
Q psy12849         30 RTNRTTVVNTINESSILIMAK-------KCRVILNCVGPY   62 (138)
Q Consensus        30 ~~~~~~~~D~~d~~~L~~~~~-------~~dvVIn~~GPf   62 (138)
                      .++.++++|+.|++++.++++       +.|++||++|..
T Consensus        59 ~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~id~lvnnAg~~   98 (265)
T 3lf2_A           59 ARLFASVCDVLDALQVRAFAEACERTLGCASILVNNAGQG   98 (265)
T ss_dssp             CCEEEEECCTTCHHHHHHHHHHHHHHHCSCSEEEECCCCC
T ss_pred             ceEEEEeCCCCCHHHHHHHHHHHHHHcCCCCEEEECCCCC
Confidence            358899999999999998887       469999999854

>1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, dinucleotide binding fold, oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea} SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A*

Probab=87.29  E-value=0.64  Score=35.41  Aligned_cols=33  Identities=15%  Similarity=0.075  Sum_probs=28.2

Q ss_pred             CCcceEEeeCCCHHHHHHHHh-------cCcEEEecCCCc
Q psy12849         30 RTNRTTVVNTINESSILIMAK-------KCRVILNCVGPY   62 (138)
Q Consensus        30 ~~~~~~~~D~~d~~~L~~~~~-------~~dvVIn~~GPf   62 (138)
                      .++.++.+|+.|++++.++++       +.|++||++|..
T Consensus        79 ~~~~~~~~D~~~~~~~~~~~~~~~~~~g~iD~lv~~Ag~~  118 (283)
T 1g0o_A           79 SDAACVKANVGVVEDIVRMFEEAVKIFGKLDIVCSNSGVV  118 (283)
T ss_dssp             CCEEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEECCCCC
T ss_pred             CCeEEEEcCCCCHHHHHHHHHHHHHHcCCCCEEEECCCcC
Confidence            367889999999999988876       579999999954

>3zv4_A CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; oxidoreductase, short chain dehydrogenase/oxidoreductase, SD comamonas testosteroni; 1.80A {Pandoraea pnomenusa} SCOP: c.2.1.2 PDB: 2y99_A* 3zv3_A 2y93_A 3zv5_A* 3zv6_A* 1bdb_A*

Probab=87.26  E-value=0.4  Score=36.73  Aligned_cols=33  Identities=9%  Similarity=0.040  Sum_probs=28.6

Q ss_pred             CCcceEEeeCCCHHHHHHHHhc-------CcEEEecCCCc
Q psy12849         30 RTNRTTVVNTINESSILIMAKK-------CRVILNCVGPY   62 (138)
Q Consensus        30 ~~~~~~~~D~~d~~~L~~~~~~-------~dvVIn~~GPf   62 (138)
                      .++.++++|+.|++++.++++.       .|++||++|.+
T Consensus        51 ~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iD~lvnnAg~~   90 (281)
T 3zv4_A           51 GNAVGVVGDVRSLQDQKRAAERCLAAFGKIDTLIPNAGIW   90 (281)
T ss_dssp             TTEEEEECCTTCHHHHHHHHHHHHHHHSCCCEEECCCCCC
T ss_pred             CcEEEEEcCCCCHHHHHHHHHHHHHhcCCCCEEEECCCcC
Confidence            4678899999999999988874       59999999964

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=87.24  E-value=4.6  Score=26.50  Aligned_cols=87  Identities=8%  Similarity=-0.053  Sum_probs=53.5

Q ss_pred             cceEEeeCCCHHHHHHH-HhcCcEEEecCCCccchhHHHHHHHHHcCCC-eeeCCCChHHHHHHHHHhHHHHHhCCCEEE
Q psy12849         32 NRTTVVNTINESSILIM-AKKCRVILNCVGPYTWYGEAVVKACIEAKTH-HVDITGEPYFMEYMQYEYNTRAQESEVCVV  109 (138)
Q Consensus        32 ~~~~~~D~~d~~~L~~~-~~~~dvVIn~~GPf~~~~~~v~~Aci~~g~h-YvDisge~~~~~~~~~~~~~~A~~~gv~iv  109 (138)
                      +.++..|..+++.+.+. ++++|+||.|+++. .....+.+.+-+.+.. .|-.+..+...        +..++.|+..+
T Consensus        49 ~~~~~~d~~~~~~l~~~~~~~~d~vi~~~~~~-~~~~~~~~~~~~~~~~~ii~~~~~~~~~--------~~l~~~g~~~v  119 (140)
T 1lss_A           49 ALVINGDCTKIKTLEDAGIEDADMYIAVTGKE-EVNLMSSLLAKSYGINKTIARISEIEYK--------DVFERLGVDVV  119 (140)
T ss_dssp             SEEEESCTTSHHHHHHTTTTTCSEEEECCSCH-HHHHHHHHHHHHTTCCCEEEECSSTTHH--------HHHHHTTCSEE
T ss_pred             cEEEEcCCCCHHHHHHcCcccCCEEEEeeCCc-hHHHHHHHHHHHcCCCEEEEEecCHhHH--------HHHHHcCCCEE
Confidence            45667788888887765 78899999999543 3444566666666643 33333332322        22344565332


Q ss_pred             eCCCCccchHhHHHHHHHHHhhhh
Q psy12849        110 SACGIETLPIDMGVLMLQDSFEGH  133 (138)
Q Consensus       110 ~~~G~d~~p~dl~~~~~~~~~~~~  133 (138)
                            ..|..+.+..+.+.+..+
T Consensus       120 ------~~p~~~~~~~~~~~~~~p  137 (140)
T 1lss_A          120 ------VSPELIAANYIEKLIERP  137 (140)
T ss_dssp             ------ECHHHHHHHHHHHHHTC-
T ss_pred             ------ECHHHHHHHHHHHHhccC
Confidence                  368888888887777654

>2x9g_A PTR1, pteridine reductase; short chain dehydrogenase, oxidoreductase; HET: NAP LYA; 1.10A {Trypanosoma brucei brucei} PDB: 2x9n_A* 2x9v_A* 3bmc_A* 3bmd_A* 3bme_A* 3bmf_A* 3bmg_A* 3bmh_A* 3bmi_A* 3bmj_A* 3bmk_A* 3bml_A* 3bmm_A* 3bmn_A* 3bmo_A* 3bmq_A* 3bmr_A* 3gn1_A* 3gn2_A* 3jq6_A* ...

Probab=87.22  E-value=0.59  Score=35.73  Aligned_cols=32  Identities=19%  Similarity=0.274  Sum_probs=28.0

Q ss_pred             CCcceEEeeCCC----HHHHHHHHh-------cCcEEEecCCC
Q psy12849         30 RTNRTTVVNTIN----ESSILIMAK-------KCRVILNCVGP   61 (138)
Q Consensus        30 ~~~~~~~~D~~d----~~~L~~~~~-------~~dvVIn~~GP   61 (138)
                      .++.++.+|+.|    ++++.++++       +.|++||++|-
T Consensus        74 ~~~~~~~~Dv~~~~~~~~~v~~~~~~~~~~~g~iD~lvnnAG~  116 (288)
T 2x9g_A           74 NTAVVCQADLTNSNVLPASCEEIINSCFRAFGRCDVLVNNASA  116 (288)
T ss_dssp             TCEEEEECCCSCSTTHHHHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred             CceEEEEeecCCccCCHHHHHHHHHHHHHhcCCCCEEEECCCC
Confidence            467889999999    999988887       68999999984

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=87.16  E-value=5.5  Score=27.26  Aligned_cols=88  Identities=13%  Similarity=0.117  Sum_probs=57.6

Q ss_pred             CcceEEeeCCCHHHHHHH-HhcCcEEEecCCCccchhHHHHHHHHHc-CCCeee-CCCChHHHHHHHHHhHHHHHhCCCE
Q psy12849         31 TNRTTVVNTINESSILIM-AKKCRVILNCVGPYTWYGEAVVKACIEA-KTHHVD-ITGEPYFMEYMQYEYNTRAQESEVC  107 (138)
Q Consensus        31 ~~~~~~~D~~d~~~L~~~-~~~~dvVIn~~GPf~~~~~~v~~Aci~~-g~hYvD-isge~~~~~~~~~~~~~~A~~~gv~  107 (138)
                      .+.++..|..+++.|.+. ++++|+||.|.+.. .....++..|-+. +..++= ...++...        +..++.|+.
T Consensus        50 ~~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~~d-~~n~~~~~~a~~~~~~~~ii~~~~~~~~~--------~~l~~~G~~  120 (153)
T 1id1_A           50 NADVIPGDSNDSSVLKKAGIDRCRAILALSDND-ADNAFVVLSAKDMSSDVKTVLAVSDSKNL--------NKIKMVHPD  120 (153)
T ss_dssp             TCEEEESCTTSHHHHHHHTTTTCSEEEECSSCH-HHHHHHHHHHHHHTSSSCEEEECSSGGGH--------HHHHTTCCS
T ss_pred             CCeEEEcCCCCHHHHHHcChhhCCEEEEecCCh-HHHHHHHHHHHHHCCCCEEEEEECCHHHH--------HHHHHcCCC
Confidence            578889999999999987 99999999999654 4445666777665 533332 22332222        223445665


Q ss_pred             EEeCCCCccchHhHHHHHHHHHhhhh
Q psy12849        108 VVSACGIETLPIDMGVLMLQDSFEGH  133 (138)
Q Consensus       108 iv~~~G~d~~p~dl~~~~~~~~~~~~  133 (138)
                      .+.      .|..+.+..+++.+.+.
T Consensus       121 ~vi------~p~~~~~~~l~~~~~~~  140 (153)
T 1id1_A          121 IIL------SPQLFGSEILARVLNGE  140 (153)
T ss_dssp             EEE------CHHHHHHHHHHHHHTTC
T ss_pred             EEE------cHHHHHHHHHHHHHhCC
Confidence            333      57777777777776543

>4fb5_A Probable oxidoreductase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, GFO/IDH/MOCA family; 2.61A {Rhizobium etli}

Probab=87.16  E-value=4.2  Score=31.79  Aligned_cols=74  Identities=14%  Similarity=0.045  Sum_probs=51.1

Q ss_pred             HHHHHh--cCcEEEecCCCccchhHHHHHHHHHcCCCeee---CCCChHHHHHHHHHhHHHHHhCCCEEEeCCCCccchH
Q psy12849         45 ILIMAK--KCRVILNCVGPYTWYGEAVVKACIEAKTHHVD---ITGEPYFMEYMQYEYNTRAQESEVCVVSACGIETLPI  119 (138)
Q Consensus        45 L~~~~~--~~dvVIn~~GPf~~~~~~v~~Aci~~g~hYvD---isge~~~~~~~~~~~~~~A~~~gv~iv~~~G~d~~p~  119 (138)
                      ++++++  +.|+|+-|. |-..+ .+++.+|+++|.|-+=   ++-...=.+    ++-+.|+++|+.+..+.=+-..|.
T Consensus        86 ~~ell~~~~iDaV~Iat-P~~~H-~~~a~~al~aGkhVl~EKPla~~~~ea~----~l~~~a~~~g~~l~vg~~~R~~p~  159 (393)
T 4fb5_A           86 WRALIADPEVDVVSVTT-PNQFH-AEMAIAALEAGKHVWCEKPMAPAYADAE----RMLATAERSGKVAALGYNYIQNPV  159 (393)
T ss_dssp             HHHHHHCTTCCEEEECS-CGGGH-HHHHHHHHHTTCEEEECSCSCSSHHHHH----HHHHHHHHSSSCEEECCGGGGCHH
T ss_pred             HHHHhcCCCCcEEEECC-ChHHH-HHHHHHHHhcCCeEEEccCCcccHHHHH----HhhhhHHhcCCccccccccccChH
Confidence            555665  479999999 66666 4789999999999753   333333333    344678999999987766656665


Q ss_pred             hHHHH
Q psy12849        120 DMGVL  124 (138)
Q Consensus       120 dl~~~  124 (138)
                      -.-+.
T Consensus       160 ~~~~k  164 (393)
T 4fb5_A          160 MRHIR  164 (393)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            54443

>1xq1_A Putative tropinone reducatse; structural genomics, protein structure initiative, CESG, AT1 reductively methylated protein; 2.10A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2q45_A

Probab=87.04  E-value=0.58  Score=35.00  Aligned_cols=33  Identities=12%  Similarity=0.139  Sum_probs=27.7

Q ss_pred             CCcceEEeeCCCHHHHHHHHh--------cCcEEEecCCCc
Q psy12849         30 RTNRTTVVNTINESSILIMAK--------KCRVILNCVGPY   62 (138)
Q Consensus        30 ~~~~~~~~D~~d~~~L~~~~~--------~~dvVIn~~GPf   62 (138)
                      .++.++.+|+.|++++.++++        +.|+|||++|..
T Consensus        63 ~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~id~li~~Ag~~  103 (266)
T 1xq1_A           63 FQVTGSVCDASLRPEREKLMQTVSSMFGGKLDILINNLGAI  103 (266)
T ss_dssp             CCEEEEECCTTSHHHHHHHHHHHHHHHTTCCSEEEEECCC-
T ss_pred             CeeEEEECCCCCHHHHHHHHHHHHHHhCCCCcEEEECCCCC
Confidence            357889999999999998884        579999999853

>1zh8_A Oxidoreductase; TM0312, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI; HET: MSE NAP; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.5

Probab=87.01  E-value=3.7  Score=32.25  Aligned_cols=74  Identities=11%  Similarity=0.031  Sum_probs=50.1

Q ss_pred             HHHHHh--cCcEEEecCCCccchhHHHHHHHHHcCCCeee---CCCChHHHHHHHHHhHHHHHhCCCEEEeCCCCccchH
Q psy12849         45 ILIMAK--KCRVILNCVGPYTWYGEAVVKACIEAKTHHVD---ITGEPYFMEYMQYEYNTRAQESEVCVVSACGIETLPI  119 (138)
Q Consensus        45 L~~~~~--~~dvVIn~~GPf~~~~~~v~~Aci~~g~hYvD---isge~~~~~~~~~~~~~~A~~~gv~iv~~~G~d~~p~  119 (138)
                      +.++++  +.|+|+-|. |-..+ .++++.|+++|.|.+=   ++-...-.+    ++-+.|+++|+.+..+.-+-..|.
T Consensus        74 ~~~ll~~~~vD~V~i~t-p~~~H-~~~~~~al~aGkhVl~EKPla~~~~ea~----~l~~~a~~~g~~~~v~~~~R~~p~  147 (340)
T 1zh8_A           74 YEELLESGLVDAVDLTL-PVELN-LPFIEKALRKGVHVICEKPISTDVETGK----KVVELSEKSEKTVYIAENFRHVPA  147 (340)
T ss_dssp             HHHHHHSSCCSEEEECC-CGGGH-HHHHHHHHHTTCEEEEESSSSSSHHHHH----HHHHHHHHCSSCEEEECGGGGCHH
T ss_pred             HHHHhcCCCCCEEEEeC-CchHH-HHHHHHHHHCCCcEEEeCCCCCCHHHHH----HHHHHHHHcCCeEEEEecccCCHH
Confidence            555665  589999999 54555 4789999999998743   333333333    444678899999887766655665


Q ss_pred             hHHHH
Q psy12849        120 DMGVL  124 (138)
Q Consensus       120 dl~~~  124 (138)
                      -..+.
T Consensus       148 ~~~~k  152 (340)
T 1zh8_A          148 FWKAK  152 (340)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            44443

>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}

Probab=87.00  E-value=0.53  Score=35.36  Aligned_cols=41  Identities=10%  Similarity=-0.091  Sum_probs=32.1

Q ss_pred             CCcceEEeeCCCHHHHHHHHhcCcEEEecCCCccch---hHHHHHHHHH
Q psy12849         30 RTNRTTVVNTINESSILIMAKKCRVILNCVGPYTWY---GEAVVKACIE   75 (138)
Q Consensus        30 ~~~~~~~~D~~d~~~L~~~~~~~dvVIn~~GPf~~~---~~~v~~Aci~   75 (138)
                      .+++++..|+.|.+     ++++|+||||+|+....   ...++++|.+
T Consensus        47 ~~~~~~~~D~~d~~-----~~~~d~vi~~a~~~~~~~~~~~~l~~a~~~   90 (286)
T 3ius_A           47 SGAEPLLWPGEEPS-----LDGVTHLLISTAPDSGGDPVLAALGDQIAA   90 (286)
T ss_dssp             TTEEEEESSSSCCC-----CTTCCEEEECCCCBTTBCHHHHHHHHHHHH
T ss_pred             CCCeEEEecccccc-----cCCCCEEEECCCccccccHHHHHHHHHHHh
Confidence            46788999998843     78999999999986432   2567888887

>3oqb_A Oxidoreductase; structural genomics, protein structure INI NEW YORK structural genomix research consortium, NYSGXRC, PSI-2; 2.60A {Bradyrhizobium japonicum}

Probab=86.94  E-value=3.6  Score=32.64  Aligned_cols=73  Identities=12%  Similarity=-0.047  Sum_probs=47.1

Q ss_pred             HHHHHhc--CcEEEecCCCccchhHHHHHHHHHcCCCeee---CCCChHHHHHHHHHhHHHHHhCCCEEEeCCCCccchH
Q psy12849         45 ILIMAKK--CRVILNCVGPYTWYGEAVVKACIEAKTHHVD---ITGEPYFMEYMQYEYNTRAQESEVCVVSACGIETLPI  119 (138)
Q Consensus        45 L~~~~~~--~dvVIn~~GPf~~~~~~v~~Aci~~g~hYvD---isge~~~~~~~~~~~~~~A~~~gv~iv~~~G~d~~p~  119 (138)
                      ++++++.  .|+|+-|..| ..+ .+++++|+++|.|.+=   ++-...-.    .++-+.|+++|+.+..+.-+-..|.
T Consensus        75 ~~~ll~~~~iD~V~i~tp~-~~h-~~~~~~al~~Gk~V~~EKP~a~~~~~~----~~l~~~a~~~~~~~~v~~~~r~~p~  148 (383)
T 3oqb_A           75 LDAALADKNDTMFFDAATT-QAR-PGLLTQAINAGKHVYCEKPIATNFEEA----LEVVKLANSKGVKHGTVQDKLFLPG  148 (383)
T ss_dssp             HHHHHHCSSCCEEEECSCS-SSS-HHHHHHHHTTTCEEEECSCSCSSHHHH----HHHHHHHHHTTCCEEECCGGGGSHH
T ss_pred             HHHHhcCCCCCEEEECCCc-hHH-HHHHHHHHHCCCeEEEcCCCCCCHHHH----HHHHHHHHHcCCeEEEEeccccCHH
Confidence            4556654  8999999955 445 4789999999999872   12222222    2445778999998766654333454


Q ss_pred             hHHH
Q psy12849        120 DMGV  123 (138)
Q Consensus       120 dl~~  123 (138)
                      -..+
T Consensus       149 ~~~~  152 (383)
T 3oqb_A          149 LKKI  152 (383)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            4333

>4gqa_A NAD binding oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: MSE; 2.42A {Klebsiella pneumoniae}

Probab=86.93  E-value=3.7  Score=32.99  Aligned_cols=77  Identities=14%  Similarity=0.034  Sum_probs=52.5

Q ss_pred             HHHHHh--cCcEEEecCCCccchhHHHHHHHHHcCCCeee---CCCChHHHHHHHHHhHHHHHhCCCEEEeCCCCccchH
Q psy12849         45 ILIMAK--KCRVILNCVGPYTWYGEAVVKACIEAKTHHVD---ITGEPYFMEYMQYEYNTRAQESEVCVVSACGIETLPI  119 (138)
Q Consensus        45 L~~~~~--~~dvVIn~~GPf~~~~~~v~~Aci~~g~hYvD---isge~~~~~~~~~~~~~~A~~~gv~iv~~~G~d~~p~  119 (138)
                      ++++++  +.|+|+-|. |-..+ .+++.+|+++|.|.+=   ++-...-.+++    -+.|+++|+.+..+.-+-..|.
T Consensus        88 ~~~ll~~~~vD~V~I~t-p~~~H-~~~~~~al~aGkhVl~EKP~a~~~~ea~~l----~~~a~~~g~~~~v~~~~R~~p~  161 (412)
T 4gqa_A           88 WRELVNDPQVDVVDITS-PNHLH-YTMAMAAIAAGKHVYCEKPLAVNEQQAQEM----AQAARRAGVKTMVAFNNIKTPA  161 (412)
T ss_dssp             HHHHHHCTTCCEEEECS-CGGGH-HHHHHHHHHTTCEEEEESCSCSSHHHHHHH----HHHHHHHTCCEEEECGGGTSHH
T ss_pred             HHHHhcCCCCCEEEECC-CcHHH-HHHHHHHHHcCCCeEeecCCcCCHHHHHHH----HHHHHHhCCeeeeccceecCHH
Confidence            455665  579999999 65666 4889999999999853   33343333333    3678889999887766666666


Q ss_pred             hHHHHHHH
Q psy12849        120 DMGVLMLQ  127 (138)
Q Consensus       120 dl~~~~~~  127 (138)
                      -..+..+.
T Consensus       162 ~~~~k~~i  169 (412)
T 4gqa_A          162 ALLAKQII  169 (412)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            55554333

>1r0k_A 1-deoxy-D-xylulose 5-phosphate reductoisomerase; NADPH dependent, fosmidomycin, non- mevalonate pathway, oxidoreductase; 1.91A {Zymomonas mobilis} SCOP: a.69.3.1 c.2.1.3 d.81.1.3 PDB: 1r0l_A*

Probab=86.77  E-value=2  Score=35.61  Aligned_cols=63  Identities=11%  Similarity=0.025  Sum_probs=44.6

Q ss_pred             HHHHHHhc-CcEEEecC-CCccchhHHHHHHHHHcCCCeeeCCCChHHHHHHHHHhHHHHHhCCCEEEeC
Q psy12849         44 SILIMAKK-CRVILNCV-GPYTWYGEAVVKACIEAKTHHVDITGEPYFMEYMQYEYNTRAQESEVCVVSA  111 (138)
Q Consensus        44 ~L~~~~~~-~dvVIn~~-GPf~~~~~~v~~Aci~~g~hYvDisge~~~~~~~~~~~~~~A~~~gv~iv~~  111 (138)
                      .+.++++. .|+||++. |   ..|-....+|+++|.|-+=.+=|.-....  ..+-+.|+++|+.++|-
T Consensus        85 ~~~el~~~~iDvVV~ai~G---~aGl~ptlaAi~aGK~VvlANKE~lv~~G--~~l~~~A~~~gv~liPV  149 (388)
T 1r0k_A           85 ALVEAAMMGADWTMAAIIG---CAGLKATLAAIRKGKTVALANKESLVSAG--GLMIDAVREHGTTLLPV  149 (388)
T ss_dssp             HHHHHHTSCCSEEEECCCS---GGGHHHHHHHHHTTSEEEECCSHHHHTTH--HHHHHHHHHHTCEEEEC
T ss_pred             HHHHHHcCCCCEEEEeCCC---HHHHHHHHHHHHCCCEEEEeCcHHHHhhH--HHHHHHHHHcCCEEEEe
Confidence            34445532 79999999 5   23667789999999999987665433322  24446788999999875

>2nm0_A Probable 3-oxacyl-(acyl-carrier-protein) reductas; oxidoreductase; 1.99A {Streptomyces coelicolor}

Probab=86.71  E-value=0.45  Score=35.98  Aligned_cols=32  Identities=9%  Similarity=0.067  Sum_probs=27.7

Q ss_pred             CcceEEeeCCCHHHHHHHHhc-------CcEEEecCCCc
Q psy12849         31 TNRTTVVNTINESSILIMAKK-------CRVILNCVGPY   62 (138)
Q Consensus        31 ~~~~~~~D~~d~~~L~~~~~~-------~dvVIn~~GPf   62 (138)
                      .+.++++|+.|++++.+++++       .|++||++|..
T Consensus        60 ~~~~~~~Dl~d~~~v~~~~~~~~~~~g~iD~lv~nAg~~   98 (253)
T 2nm0_A           60 GFLAVKCDITDTEQVEQAYKEIEETHGPVEVLIANAGVT   98 (253)
T ss_dssp             TSEEEECCTTSHHHHHHHHHHHHHHTCSCSEEEEECSCC
T ss_pred             cceEEEecCCCHHHHHHHHHHHHHHcCCCCEEEECCCCC
Confidence            467889999999999998876       59999999964

>3rku_A Oxidoreductase YMR226C; substrate fingerprint, short chain oxidoreductase, rossmann oxidoreductase; HET: NAP; 2.60A {Saccharomyces cerevisiae}

Probab=86.66  E-value=0.37  Score=37.33  Aligned_cols=33  Identities=9%  Similarity=0.155  Sum_probs=28.8

Q ss_pred             CCcceEEeeCCCHHHHHHHHhc-------CcEEEecCCCc
Q psy12849         30 RTNRTTVVNTINESSILIMAKK-------CRVILNCVGPY   62 (138)
Q Consensus        30 ~~~~~~~~D~~d~~~L~~~~~~-------~dvVIn~~GPf   62 (138)
                      .++.++.+|+.|++++.++++.       .|++||++|..
T Consensus        87 ~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~lVnnAG~~  126 (287)
T 3rku_A           87 AKVHVAQLDITQAEKIKPFIENLPQEFKDIDILVNNAGKA  126 (287)
T ss_dssp             CEEEEEECCTTCGGGHHHHHHTSCGGGCSCCEEEECCCCC
T ss_pred             CeEEEEECCCCCHHHHHHHHHHHHHhcCCCCEEEECCCcC
Confidence            4678899999999999999984       69999999954

>3do5_A HOM, homoserine dehydrogenase; NP_069768.1, putative homoserine dehydrogenase, structural G joint center for structural genomics, JCSG; 2.20A {Archaeoglobus fulgidus}

Probab=86.58  E-value=2.6  Score=33.73  Aligned_cols=63  Identities=10%  Similarity=0.111  Sum_probs=44.4

Q ss_pred             HHHHHh--cCcEEEecCCCccch---hHHHHHHHHHcCCCeeeCCCChHHHHHHHHHhHHHHHhCCCEEEe
Q psy12849         45 ILIMAK--KCRVILNCVGPYTWY---GEAVVKACIEAKTHHVDITGEPYFMEYMQYEYNTRAQESEVCVVS  110 (138)
Q Consensus        45 L~~~~~--~~dvVIn~~GPf~~~---~~~v~~Aci~~g~hYvDisge~~~~~~~~~~~~~~A~~~gv~iv~  110 (138)
                      +.++++  ..|+|+.|. |...+   +...+..|+++|.|-|--+=. ++.... .++.+.|+++|+.++-
T Consensus        72 ~~~ll~~~~iDvVv~~t-p~~~h~~~a~~~~~~aL~aGkhVv~~NKk-pla~~~-~eL~~~A~~~g~~~~~  139 (327)
T 3do5_A           72 AIEVVRSADYDVLIEAS-VTRVDGGEGVNYIREALKRGKHVVTSNKG-PLVAEF-HGLMSLAERNGVRLMY  139 (327)
T ss_dssp             HHHHHHHSCCSEEEECC-CCC----CHHHHHHHHHTTTCEEEECCSH-HHHHHH-HHHHHHHHHTTCCEEC
T ss_pred             HHHHhcCCCCCEEEECC-CCcccchhHHHHHHHHHHCCCeEEecCch-hhHHHH-HHHHHHHHhhCCcEEE
Confidence            445554  489999999 44433   357889999999999987443 443343 4777889999997764

>3ec7_A Putative dehydrogenase; alpha-beta, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; HET: MSE NAD EPE; 2.15A {Salmonella typhimurium}

Probab=86.51  E-value=3.7  Score=32.56  Aligned_cols=74  Identities=7%  Similarity=-0.143  Sum_probs=48.4

Q ss_pred             HHHHHh--cCcEEEecCCCccchhHHHHHHHHHcCCCeee---CCCChHHHHHHHHHhHHHHHhCCCEE-EeCCCCccch
Q psy12849         45 ILIMAK--KCRVILNCVGPYTWYGEAVVKACIEAKTHHVD---ITGEPYFMEYMQYEYNTRAQESEVCV-VSACGIETLP  118 (138)
Q Consensus        45 L~~~~~--~~dvVIn~~GPf~~~~~~v~~Aci~~g~hYvD---isge~~~~~~~~~~~~~~A~~~gv~i-v~~~G~d~~p  118 (138)
                      +.++++  +.|+|+-|. |-..+ ..++..|+++|.|.+=   ++-...-.++    +-+.|+++|+.+ ..+.-+-..|
T Consensus        79 ~~~ll~~~~~D~V~i~t-p~~~h-~~~~~~al~aGk~Vl~EKPla~~~~e~~~----l~~~a~~~g~~~~~v~~~~R~~p  152 (357)
T 3ec7_A           79 YHDLINDKDVEVVIITA-SNEAH-ADVAVAALNANKYVFCEKPLAVTAADCQR----VIEAEQKNGKRMVQIGFMRRYDK  152 (357)
T ss_dssp             HHHHHHCTTCCEEEECS-CGGGH-HHHHHHHHHTTCEEEEESSSCSSHHHHHH----HHHHHHHHTSCCEEEECGGGGSH
T ss_pred             HHHHhcCCCCCEEEEcC-CcHHH-HHHHHHHHHCCCCEEeecCccCCHHHHHH----HHHHHHHhCCeEEEEeecccCCH
Confidence            455666  489999999 55555 4789999999999763   3444444443    446788889866 4555444455


Q ss_pred             HhHHHH
Q psy12849        119 IDMGVL  124 (138)
Q Consensus       119 ~dl~~~  124 (138)
                      .-..+.
T Consensus       153 ~~~~~k  158 (357)
T 3ec7_A          153 GYVQLK  158 (357)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            544443

>2pd4_A Enoyl-[acyl-carrier-protein] reductase [NADH]; antibacterial target, type II fatty acid biosynthesis, enoyl-ACP-reductase, FABI; HET: NAD DCN; 2.30A {Helicobacter pylori} SCOP: c.2.1.2 PDB: 2pd3_A*

Probab=86.37  E-value=0.55  Score=35.63  Aligned_cols=32  Identities=9%  Similarity=0.039  Sum_probs=27.6

Q ss_pred             CcceEEeeCCCHHHHHHHHh-------cCcEEEecCCCc
Q psy12849         31 TNRTTVVNTINESSILIMAK-------KCRVILNCVGPY   62 (138)
Q Consensus        31 ~~~~~~~D~~d~~~L~~~~~-------~~dvVIn~~GPf   62 (138)
                      ++.++.+|+.|++++.++++       +.|++||++|..
T Consensus        57 ~~~~~~~D~~~~~~v~~~~~~~~~~~g~id~lv~nAg~~   95 (275)
T 2pd4_A           57 SPYVYELDVSKEEHFKSLYNSVKKDLGSLDFIVHSVAFA   95 (275)
T ss_dssp             CCCEEECCTTCHHHHHHHHHHHHHHTSCEEEEEECCCCC
T ss_pred             CcEEEEcCCCCHHHHHHHHHHHHHHcCCCCEEEECCccC
Confidence            36889999999999999888       469999999854

>2ag5_A DHRS6, dehydrogenase/reductase (SDR family) member 6; protein-CO-factor complex, structural genomics, structural G consortium, SGC, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: c.2.1.2

Probab=86.22  E-value=0.78  Score=34.10  Aligned_cols=32  Identities=22%  Similarity=0.279  Sum_probs=27.4

Q ss_pred             CcceEEeeCCCHHHHHHHHh---cCcEEEecCCCc
Q psy12849         31 TNRTTVVNTINESSILIMAK---KCRVILNCVGPY   62 (138)
Q Consensus        31 ~~~~~~~D~~d~~~L~~~~~---~~dvVIn~~GPf   62 (138)
                      ++.++.+|+.|++++.++.+   +.|++||++|..
T Consensus        51 ~~~~~~~D~~~~~~~~~~~~~~~~id~lv~~Ag~~   85 (246)
T 2ag5_A           51 GIQTRVLDVTKKKQIDQFANEVERLDVLFNVAGFV   85 (246)
T ss_dssp             TEEEEECCTTCHHHHHHHHHHCSCCSEEEECCCCC
T ss_pred             CceEEEeeCCCHHHHHHHHHHhCCCCEEEECCccC
Confidence            67889999999999987765   579999999954

>3qlj_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.80A {Mycobacterium avium}

Probab=86.16  E-value=0.49  Score=36.99  Aligned_cols=33  Identities=12%  Similarity=0.019  Sum_probs=28.8

Q ss_pred             CCcceEEeeCCCHHHHHHHHh-------cCcEEEecCCCc
Q psy12849         30 RTNRTTVVNTINESSILIMAK-------KCRVILNCVGPY   62 (138)
Q Consensus        30 ~~~~~~~~D~~d~~~L~~~~~-------~~dvVIn~~GPf   62 (138)
                      .++.++.+|+.|++++.++++       +.|++||++|..
T Consensus        86 ~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~lv~nAg~~  125 (322)
T 3qlj_A           86 GEAVADGSNVADWDQAAGLIQTAVETFGGLDVLVNNAGIV  125 (322)
T ss_dssp             CEEEEECCCTTSHHHHHHHHHHHHHHHSCCCEEECCCCCC
T ss_pred             CcEEEEECCCCCHHHHHHHHHHHHHHcCCCCEEEECCCCC
Confidence            357788999999999999988       679999999964

>1h6d_A Precursor form of glucose-fructose oxidoreductase; protein translocation, periplasmic oxidoreductase, signal peptide, ligand binding,; HET: NDP; 2.05A {Zymomonas mobilis} SCOP: c.2.1.3 d.81.1.5 PDB: 1h6b_A* 1h6a_A* 1h6c_A* 1ryd_A* 1rye_A* 1ofg_A* 1evj_A*

Probab=85.97  E-value=2.1  Score=35.09  Aligned_cols=73  Identities=11%  Similarity=0.087  Sum_probs=48.0

Q ss_pred             HHHHHh--cCcEEEecCCCccchhHHHHHHHHHcCCCee-e--CCCChHHHHHHHHHhHHHHHhCCCEEEeCCCCccchH
Q psy12849         45 ILIMAK--KCRVILNCVGPYTWYGEAVVKACIEAKTHHV-D--ITGEPYFMEYMQYEYNTRAQESEVCVVSACGIETLPI  119 (138)
Q Consensus        45 L~~~~~--~~dvVIn~~GPf~~~~~~v~~Aci~~g~hYv-D--isge~~~~~~~~~~~~~~A~~~gv~iv~~~G~d~~p~  119 (138)
                      +.++++  +.|+|+-|+ |-..+ ..++..|+++|.|.+ .  ++-...-.+    ++.+.|+++|+.+..+.-+-..|.
T Consensus       142 ~~~ll~~~~vD~V~iat-p~~~h-~~~~~~al~aGk~Vl~EKPla~~~~e~~----~l~~~a~~~g~~~~v~~~~R~~p~  215 (433)
T 1h6d_A          142 FDKIAKDPKIDAVYIIL-PNSLH-AEFAIRAFKAGKHVMCEKPMATSVADCQ----RMIDAAKAANKKLMIGYRCHYDPM  215 (433)
T ss_dssp             GGGGGGCTTCCEEEECS-CGGGH-HHHHHHHHHTTCEEEECSSCCSSHHHHH----HHHHHHHHHTCCEEECCGGGGCHH
T ss_pred             HHHHhcCCCCCEEEEcC-CchhH-HHHHHHHHHCCCcEEEcCCCCCCHHHHH----HHHHHHHHhCCeEEEEechhcCHH
Confidence            344555  689999999 54555 478899999999855 3  233333232    455778889999877655545565


Q ss_pred             hHHH
Q psy12849        120 DMGV  123 (138)
Q Consensus       120 dl~~  123 (138)
                      -..+
T Consensus       216 ~~~~  219 (433)
T 1h6d_A          216 NRAA  219 (433)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            4433

>4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A

Probab=85.94  E-value=1.4  Score=33.30  Aligned_cols=35  Identities=0%  Similarity=0.019  Sum_probs=28.8

Q ss_pred             cCCCCcceEEeeCCCHHHHHHHHh-------cCcEEEecCCC
Q psy12849         27 FGVRTNRTTVVNTINESSILIMAK-------KCRVILNCVGP   61 (138)
Q Consensus        27 ~~~~~~~~~~~D~~d~~~L~~~~~-------~~dvVIn~~GP   61 (138)
                      .+..+..++++|++|++++.++++       +.|++||++|-
T Consensus        55 ~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~G~iD~lvnnAg~   96 (256)
T 4fs3_A           55 LNQPEAHLYQIDVQSDEEVINGFEQIGKDVGNIDGVYHSIAF   96 (256)
T ss_dssp             GTCSSCEEEECCTTCHHHHHHHHHHHHHHHCCCSEEEECCCC
T ss_pred             cCCCcEEEEEccCCCHHHHHHHHHHHHHHhCCCCEEEecccc
Confidence            344578889999999999988876       47999999983

>4b79_A PA4098, probable short-chain dehydrogenase; oxidoreductase, infectious disease, structure-based inhibito; HET: NAD; 1.98A {Pseudomonas aeruginosa PAO1}

Probab=85.91  E-value=0.69  Score=35.70  Aligned_cols=32  Identities=13%  Similarity=0.171  Sum_probs=28.4

Q ss_pred             CCcceEEeeCCCHHHHHHHHhc---CcEEEecCCC
Q psy12849         30 RTNRTTVVNTINESSILIMAKK---CRVILNCVGP   61 (138)
Q Consensus        30 ~~~~~~~~D~~d~~~L~~~~~~---~dvVIn~~GP   61 (138)
                      .++...++|++|+++++++++.   .|++||++|-
T Consensus        54 ~~~~~~~~Dv~~~~~v~~~~~~~g~iDiLVNNAGi   88 (242)
T 4b79_A           54 PRIRREELDITDSQRLQRLFEALPRLDVLVNNAGI   88 (242)
T ss_dssp             TTEEEEECCTTCHHHHHHHHHHCSCCSEEEECCCC
T ss_pred             CCeEEEEecCCCHHHHHHHHHhcCCCCEEEECCCC
Confidence            5678899999999999999885   5999999994

>3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, FAT biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} SCOP: c.2.1.0

Probab=85.86  E-value=0.76  Score=34.03  Aligned_cols=33  Identities=12%  Similarity=0.101  Sum_probs=28.1

Q ss_pred             CCcceEEeeCCCHHHHHHHHh---cCcEEEecCCCc
Q psy12849         30 RTNRTTVVNTINESSILIMAK---KCRVILNCVGPY   62 (138)
Q Consensus        30 ~~~~~~~~D~~d~~~L~~~~~---~~dvVIn~~GPf   62 (138)
                      .++.+..+|+.+.+++.++++   +.|++||++|..
T Consensus        60 ~~~~~~~~D~~~~~~~~~~~~~~~~id~li~~Ag~~   95 (249)
T 3f9i_A           60 DNYTIEVCNLANKEECSNLISKTSNLDILVCNAGIT   95 (249)
T ss_dssp             SSEEEEECCTTSHHHHHHHHHTCSCCSEEEECCC--
T ss_pred             cCccEEEcCCCCHHHHHHHHHhcCCCCEEEECCCCC
Confidence            467889999999999999998   579999999954

>3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, center for structural genomics of infec diseases, csgid; 2.80A {Bacillus anthracis}

Probab=85.68  E-value=0.72  Score=34.87  Aligned_cols=34  Identities=15%  Similarity=0.217  Sum_probs=28.9

Q ss_pred             CCcceEEeeCCCHHHHHHHHh---cCcEEEecCCCcc
Q psy12849         30 RTNRTTVVNTINESSILIMAK---KCRVILNCVGPYT   63 (138)
Q Consensus        30 ~~~~~~~~D~~d~~~L~~~~~---~~dvVIn~~GPf~   63 (138)
                      ..+.++.+|+.|++++.++++   +.|++||++|.+.
T Consensus        61 ~~~~~~~~D~~~~~~~~~~~~~~g~id~lv~nAg~~~   97 (267)
T 3t4x_A           61 AILQPVVADLGTEQGCQDVIEKYPKVDILINNLGIFE   97 (267)
T ss_dssp             CEEEEEECCTTSHHHHHHHHHHCCCCSEEEECCCCCC
T ss_pred             ceEEEEecCCCCHHHHHHHHHhcCCCCEEEECCCCCC
Confidence            356788999999999999988   5799999999653

>3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp}

Probab=85.58  E-value=0.56  Score=36.19  Aligned_cols=33  Identities=12%  Similarity=0.013  Sum_probs=28.5

Q ss_pred             CCcceEEeeCCCHHHHHHHHh-------cCcEEEecCCCc
Q psy12849         30 RTNRTTVVNTINESSILIMAK-------KCRVILNCVGPY   62 (138)
Q Consensus        30 ~~~~~~~~D~~d~~~L~~~~~-------~~dvVIn~~GPf   62 (138)
                      .++.++.+|+.|++++.++++       +.|++||++|..
T Consensus       100 ~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~lv~nAg~~  139 (294)
T 3r3s_A          100 RKAVLLPGDLSDESFARSLVHKAREALGGLDILALVAGKQ  139 (294)
T ss_dssp             CCEEECCCCTTSHHHHHHHHHHHHHHHTCCCEEEECCCCC
T ss_pred             CcEEEEEecCCCHHHHHHHHHHHHHHcCCCCEEEECCCCc
Confidence            467889999999999988886       579999999953

>1gr0_A Inositol-3-phosphate synthase; isomerase, oxidoreductase, PSI, protein structure initiative, TB structural genomics consortium, TB; HET: NAD; 1.95A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3

Probab=85.55  E-value=1.2  Score=36.81  Aligned_cols=64  Identities=13%  Similarity=0.147  Sum_probs=43.8

Q ss_pred             HHHHHHhc--CcEEEecCCCccch--hHHHHHHHHHcCCCeeeCCCChHHHHHHHHHhHHHHHhCCCEEEeC
Q psy12849         44 SILIMAKK--CRVILNCVGPYTWY--GEAVVKACIEAKTHHVDITGEPYFMEYMQYEYNTRAQESEVCVVSA  111 (138)
Q Consensus        44 ~L~~~~~~--~dvVIn~~GPf~~~--~~~v~~Aci~~g~hYvDisge~~~~~~~~~~~~~~A~~~gv~iv~~  111 (138)
                      .+.++.++  .|||||-. |....  ..--+.||+++||.||..+-...+..   ..+.+.|+++|+.++--
T Consensus       129 Di~~~~~~~~~dVvV~~l-p~gs~~aS~~YA~Aal~ag~~fvN~~P~~~~~~---P~~~el~~~~g~pi~Gd  196 (367)
T 1gr0_A          129 DVVQALKEAKVDVLVSYL-PVGSEEADKFYAQCAIDAGVAFVNALPVFIASD---PVWAKKFTDARVPIVGD  196 (367)
T ss_dssp             CHHHHHHHTTCSEEEECC-CTTCHHHHHHHHHHHHHHTCEEEECSSCCSTTS---HHHHHHHHHHTCEEEES
T ss_pred             HHHHHHHHhCCcEEEEee-eCCCcCHHHHHHHHHHHcCCceEecCCccccCC---HHHHHHHHHcCCCEecc
Confidence            37777775  79999987 76533  23456899999999999655433310   12336678889987654

>4ew6_A D-galactose-1-dehydrogenase protein; nysgrc, PSI-biology, structural genomics, NEW YORK structura genomics research consortium, two domain; 2.30A {Rhizobium etli}

Probab=85.50  E-value=5  Score=31.50  Aligned_cols=75  Identities=12%  Similarity=0.110  Sum_probs=49.7

Q ss_pred             HHHHHh---cCcEEEecCCCccchhHHHHHHHHHcCCCeeeCCCChHH--HHHHHHHhHHHHHhCCCEEEeCCCCccchH
Q psy12849         45 ILIMAK---KCRVILNCVGPYTWYGEAVVKACIEAKTHHVDITGEPYF--MEYMQYEYNTRAQESEVCVVSACGIETLPI  119 (138)
Q Consensus        45 L~~~~~---~~dvVIn~~GPf~~~~~~v~~Aci~~g~hYvDisge~~~--~~~~~~~~~~~A~~~gv~iv~~~G~d~~p~  119 (138)
                      +.++++   +.|+|+-|. |-..+ .+++++|+++|.|.+  +.-|..  .++. .++-+.|+++|+.+..+.-+-..|.
T Consensus        72 ~~~ll~~~~~vD~V~i~t-p~~~H-~~~~~~al~aGkhVl--~EKP~a~~~~e~-~~l~~~a~~~g~~~~v~~~~r~~p~  146 (330)
T 4ew6_A           72 IEAMLDAEPSIDAVSLCM-PPQYR-YEAAYKALVAGKHVF--LEKPPGATLSEV-ADLEALANKQGASLFASWHSRYAPA  146 (330)
T ss_dssp             HHHHHHHCTTCCEEEECS-CHHHH-HHHHHHHHHTTCEEE--ECSSSCSSHHHH-HHHHHHHHHHTCCEEECCGGGGSTT
T ss_pred             HHHHHhCCCCCCEEEEeC-CcHHH-HHHHHHHHHcCCcEE--EeCCCCCCHHHH-HHHHHHHHhcCCeEEEEehhhccHH
Confidence            455554   489999999 54555 488999999999988  222111  1222 2455778899998887765555665


Q ss_pred             hHHHH
Q psy12849        120 DMGVL  124 (138)
Q Consensus       120 dl~~~  124 (138)
                      -..+.
T Consensus       147 ~~~~k  151 (330)
T 4ew6_A          147 VEAAK  151 (330)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            55444

>2qq5_A DHRS1, dehydrogenase/reductase SDR family member 1; short-chain, structura genomics consortium, SGC, oxidoreductase; 1.80A {Homo sapiens}

Probab=85.46  E-value=0.47  Score=35.66  Aligned_cols=30  Identities=17%  Similarity=0.168  Sum_probs=25.8

Q ss_pred             CcceEEeeCCCHHHHHHHHhc--------CcEEEecCC
Q psy12849         31 TNRTTVVNTINESSILIMAKK--------CRVILNCVG   60 (138)
Q Consensus        31 ~~~~~~~D~~d~~~L~~~~~~--------~dvVIn~~G   60 (138)
                      ++.++.+|+.|++++.+++++        .|++||++|
T Consensus        55 ~~~~~~~Dv~~~~~v~~~~~~~~~~~~g~id~lvnnAg   92 (260)
T 2qq5_A           55 QCVPVVCDSSQESEVRSLFEQVDREQQGRLDVLVNNAY   92 (260)
T ss_dssp             EEEEEECCTTSHHHHHHHHHHHHHHHTTCCCEEEECCC
T ss_pred             ceEEEECCCCCHHHHHHHHHHHHHhcCCCceEEEECCc
Confidence            578899999999999888764        499999995

>3uf0_A Short-chain dehydrogenase/reductase SDR; gluconate, gluconate 5-dehydratase, NAD(P) dependent, enzyme initiative, EFI, oxidoreductase; HET: NAP; 2.00A {Beutenbergia cavernae} SCOP: c.2.1.0

Probab=85.43  E-value=0.75  Score=35.16  Aligned_cols=34  Identities=15%  Similarity=0.214  Sum_probs=28.7

Q ss_pred             CCcceEEeeCCCHHHHHHHHh------cCcEEEecCCCcc
Q psy12849         30 RTNRTTVVNTINESSILIMAK------KCRVILNCVGPYT   63 (138)
Q Consensus        30 ~~~~~~~~D~~d~~~L~~~~~------~~dvVIn~~GPf~   63 (138)
                      .++.++++|+.|++++.++.+      +.|++||++|...
T Consensus        79 ~~~~~~~~Dv~d~~~v~~~~~~~~~~g~iD~lv~nAg~~~  118 (273)
T 3uf0_A           79 GSAEAVVADLADLEGAANVAEELAATRRVDVLVNNAGIIA  118 (273)
T ss_dssp             CEEEEEECCTTCHHHHHHHHHHHHHHSCCCEEEECCCCCC
T ss_pred             CcEEEEEecCCCHHHHHHHHHHHHhcCCCcEEEECCCCCC
Confidence            467889999999999988865      6899999998643

>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A

Probab=85.27  E-value=4.1  Score=29.96  Aligned_cols=49  Identities=4%  Similarity=-0.078  Sum_probs=38.7

Q ss_pred             CCcceEEeeCCCHHHHHHH-HhcCcEEEecCCCccchhHHHHHHHHHcCCC
Q psy12849         30 RTNRTTVVNTINESSILIM-AKKCRVILNCVGPYTWYGEAVVKACIEAKTH   79 (138)
Q Consensus        30 ~~~~~~~~D~~d~~~L~~~-~~~~dvVIn~~GPf~~~~~~v~~Aci~~g~h   79 (138)
                      ..+.++..|.+|++.|.+. ++++|.||.+.+. ......++..|-+.+.+
T Consensus        49 ~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~~-d~~n~~~~~~a~~~~~~   98 (234)
T 2aef_A           49 SGANFVHGDPTRVSDLEKANVRGARAVIVDLES-DSETIHCILGIRKIDES   98 (234)
T ss_dssp             TTCEEEESCTTCHHHHHHTTCTTCSEEEECCSC-HHHHHHHHHHHHHHCSS
T ss_pred             cCCeEEEcCCCCHHHHHhcCcchhcEEEEcCCC-cHHHHHHHHHHHHHCCC
Confidence            3567889999999999887 8999999999954 34445677777777765

>4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A

Probab=85.24  E-value=0.63  Score=35.09  Aligned_cols=32  Identities=6%  Similarity=0.043  Sum_probs=27.9

Q ss_pred             CcceEEeeCCCHHHHHHHHh-------cCcEEEecCCCc
Q psy12849         31 TNRTTVVNTINESSILIMAK-------KCRVILNCVGPY   62 (138)
Q Consensus        31 ~~~~~~~D~~d~~~L~~~~~-------~~dvVIn~~GPf   62 (138)
                      ++.++.+|+.|++++.++++       +.|++||++|..
T Consensus        55 ~~~~~~~Dv~~~~~v~~~~~~~~~~~g~id~lv~nAg~~   93 (255)
T 4eso_A           55 RVHALRSDIADLNEIAVLGAAAGQTLGAIDLLHINAGVS   93 (255)
T ss_dssp             GEEEEECCTTCHHHHHHHHHHHHHHHSSEEEEEECCCCC
T ss_pred             cceEEEccCCCHHHHHHHHHHHHHHhCCCCEEEECCCCC
Confidence            57889999999999998876       579999999864

>3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A

Probab=85.19  E-value=2  Score=32.09  Aligned_cols=33  Identities=12%  Similarity=0.171  Sum_probs=28.3

Q ss_pred             CCcceEEeeC--CCHHHHHHHHh-------cCcEEEecCCCc
Q psy12849         30 RTNRTTVVNT--INESSILIMAK-------KCRVILNCVGPY   62 (138)
Q Consensus        30 ~~~~~~~~D~--~d~~~L~~~~~-------~~dvVIn~~GPf   62 (138)
                      .++.++.+|+  .|++++.++++       +.|++||++|..
T Consensus        62 ~~~~~~~~D~~~~~~~~~~~~~~~~~~~~g~id~lv~nAg~~  103 (252)
T 3f1l_A           62 RQPQWFILDLLTCTSENCQQLAQRIAVNYPRLDGVLHNAGLL  103 (252)
T ss_dssp             CCCEEEECCTTTCCHHHHHHHHHHHHHHCSCCSEEEECCCCC
T ss_pred             CCceEEEEecccCCHHHHHHHHHHHHHhCCCCCEEEECCccC
Confidence            3678999999  89999988887       579999999953

>4imr_A 3-oxoacyl-(acyl-carrier-protein) reductase; oxidoreductase, nicotinamide adenine dinucleotide phosphate, structural genomics; HET: NAP; 1.96A {Agrobacterium fabrum}

Probab=85.15  E-value=1.3  Score=33.85  Aligned_cols=32  Identities=3%  Similarity=-0.037  Sum_probs=28.2

Q ss_pred             CCcceEEeeCCCHHHHHHHHh------cCcEEEecCCC
Q psy12849         30 RTNRTTVVNTINESSILIMAK------KCRVILNCVGP   61 (138)
Q Consensus        30 ~~~~~~~~D~~d~~~L~~~~~------~~dvVIn~~GP   61 (138)
                      .++.++.+|+.|++++.++++      +.|++||++|.
T Consensus        82 ~~~~~~~~Dv~~~~~~~~~~~~~~~~g~iD~lvnnAg~  119 (275)
T 4imr_A           82 GTAQELAGDLSEAGAGTDLIERAEAIAPVDILVINASA  119 (275)
T ss_dssp             CCEEEEECCTTSTTHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred             CeEEEEEecCCCHHHHHHHHHHHHHhCCCCEEEECCCC
Confidence            467889999999999998887      67999999994

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}

Probab=85.05  E-value=0.87  Score=35.38  Aligned_cols=62  Identities=15%  Similarity=0.199  Sum_probs=41.6

Q ss_pred             HHHHHHhcCcEEEecCCCccchhHHHHHHHHHcCCCeeeCCCChHHHHHHHHHhHHHHHhCCCEEEeCCC
Q psy12849         44 SILIMAKKCRVILNCVGPYTWYGEAVVKACIEAKTHHVDITGEPYFMEYMQYEYNTRAQESEVCVVSACG  113 (138)
Q Consensus        44 ~L~~~~~~~dvVIn~~GPf~~~~~~v~~Aci~~g~hYvDisge~~~~~~~~~~~~~~A~~~gv~iv~~~G  113 (138)
                      ++.++++++|+|++|+ |....+...++ .++.|...||++..+.-+     .+ +.+++.|+.++.--|
T Consensus       206 ~l~~~l~~aDvVi~~~-p~~~i~~~~l~-~mk~~~~lin~ar~~~~~-----~~-~~a~~~Gv~~~~~~~  267 (293)
T 3d4o_A          206 KAAQELRDVDVCINTI-PALVVTANVLA-EMPSHTFVIDLASKPGGT-----DF-RYAEKRGIKALLVPG  267 (293)
T ss_dssp             GHHHHTTTCSEEEECC-SSCCBCHHHHH-HSCTTCEEEECSSTTCSB-----CH-HHHHHHTCEEEECCC
T ss_pred             hHHHHhcCCCEEEECC-ChHHhCHHHHH-hcCCCCEEEEecCCCCCC-----CH-HHHHHCCCEEEECCC
Confidence            4677889999999999 55555555444 567899999998422211     12 345677988864344

>2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold, tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides} PDB: 2wdz_A* 3lqf_A*

Probab=85.03  E-value=0.86  Score=33.63  Aligned_cols=30  Identities=13%  Similarity=0.242  Sum_probs=26.2

Q ss_pred             ceEEeeCCCHHHHHHHHh------cCcEEEecCCCc
Q psy12849         33 RTTVVNTINESSILIMAK------KCRVILNCVGPY   62 (138)
Q Consensus        33 ~~~~~D~~d~~~L~~~~~------~~dvVIn~~GPf   62 (138)
                      .++.+|+.|++++.++++      +.|+|||++|..
T Consensus        61 ~~~~~D~~~~~~~~~~~~~~~~~~~id~li~~Ag~~   96 (254)
T 2wsb_A           61 ARIVADVTDAEAMTAAAAEAEAVAPVSILVNSAGIA   96 (254)
T ss_dssp             EEEECCTTCHHHHHHHHHHHHHHSCCCEEEECCCCC
T ss_pred             eEEEEecCCHHHHHHHHHHHHhhCCCcEEEECCccC
Confidence            778999999999998885      679999999854

>3obe_A Sugar phosphate isomerase/epimerase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.70A {Parabacteroides distasonis}

Probab=84.82  E-value=5.2  Score=30.82  Aligned_cols=93  Identities=6%  Similarity=-0.088  Sum_probs=59.5

Q ss_pred             HHHHHhhhhcCCCCcceEEe--------e-------CCCHHHHHHHHhcCcEEEecCC-Ccc-c------------hhHH
Q psy12849         18 FLFLQKASWFGVRTNRTTVV--------N-------TINESSILIMAKKCRVILNCVG-PYT-W------------YGEA   68 (138)
Q Consensus        18 ~~~~~~a~~~~~~~~~~~~~--------D-------~~d~~~L~~~~~~~dvVIn~~G-Pf~-~------------~~~~   68 (138)
                      -..++.+.+.|.+.+++...        +       ..+.+++.+.+++..+-+.+.. |+. .            .-.+
T Consensus        39 ~~~l~~aa~~G~~~VEl~~~~~~~~~~~~~~p~~~~~~~~~~l~~~l~~~GL~i~~~~~~~~~~~~~~~~~~~~~~~~~~  118 (305)
T 3obe_A           39 PNGLNRLAKAGYTDLEIFGYREDTGKFGDYNPKNTTFIASKDYKKMVDDAGLRISSSHLTPSLREYTKENMPKFDEFWKK  118 (305)
T ss_dssp             HHHHHHHHHHTCCEEEECCBCTTTCCBCCC----CCCBCHHHHHHHHHHTTCEEEEEBCCCSCCCCCGGGHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCEEEecccccccccccCcCcccccccCHHHHHHHHHHCCCeEEEeeccccccccchhhHHHHHHHHHH
Confidence            44677777877766655432        1       1277899999999877665443 331 1            1246


Q ss_pred             HHHHHHHcCCCeeeCCCCh------HH--HHHHHHHhHHHHHhCCCEEEe
Q psy12849         69 VVKACIEAKTHHVDITGEP------YF--MEYMQYEYNTRAQESEVCVVS  110 (138)
Q Consensus        69 v~~Aci~~g~hYvDisge~------~~--~~~~~~~~~~~A~~~gv~iv~  110 (138)
                      .++.|.+.|+.||=+.|.+      .|  +.+...+.-+.|++.|+++..
T Consensus       119 ~i~~A~~lG~~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~Gv~l~l  168 (305)
T 3obe_A          119 ATDIHAELGVSCMVQPSLPRIENEDDAKVVSEIFNRAGEITKKAGILWGY  168 (305)
T ss_dssp             HHHHHHHHTCSEEEECCCCCCSSHHHHHHHHHHHHHHHHHHHTTTCEEEE
T ss_pred             HHHHHHHcCCCEEEeCCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCEEEE
Confidence            7888999999999875422      12  112223566678889999875

>3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens}

Probab=84.65  E-value=2.1  Score=32.66  Aligned_cols=63  Identities=11%  Similarity=0.014  Sum_probs=40.2

Q ss_pred             HHHHHHhcCcEEEecCCCccchhHHHH------HHHHHcCCCeeeCCCChHHHHHHHHHhHHHHHhCCCEEEe
Q psy12849         44 SILIMAKKCRVILNCVGPYTWYGEAVV------KACIEAKTHHVDITGEPYFMEYMQYEYNTRAQESEVCVVS  110 (138)
Q Consensus        44 ~L~~~~~~~dvVIn~~GPf~~~~~~v~------~Aci~~g~hYvDisge~~~~~~~~~~~~~~A~~~gv~iv~  110 (138)
                      ++.++++++|+||-|+ |....-+.++      ...+..|+.+||.+.-.+-...   +..+..++.|+.++.
T Consensus        50 ~~~~~~~~aDvvi~~v-p~~~~~~~v~~~~~~l~~~l~~~~~vi~~st~~~~~~~---~~~~~~~~~g~~~~~  118 (287)
T 3pef_A           50 TPCEVVESCPVTFAML-ADPAAAEEVCFGKHGVLEGIGEGRGYVDMSTVDPATSQ---RIGVAVVAKGGRFLE  118 (287)
T ss_dssp             SHHHHHHHCSEEEECC-SSHHHHHHHHHSTTCHHHHCCTTCEEEECSCCCHHHHH---HHHHHHHHTTCEEEE
T ss_pred             CHHHHHhcCCEEEEEc-CCHHHHHHHHcCcchHhhcCCCCCEEEeCCCCCHHHHH---HHHHHHHHhCCEEEE
Confidence            3566778999999999 5322223344      2445689999999886554322   333555667887765

>3dmy_A Protein FDRA; predicted actyl-COA synthetase, nysgrc, PSI-II, STRU genomics, protein structure initiative; 2.07A {Escherichia coli}

Probab=84.49  E-value=2.3  Score=36.10  Aligned_cols=70  Identities=14%  Similarity=0.173  Sum_probs=51.9

Q ss_pred             CHHHHHHHHhcCcEEEecCCCccchhHHHHHHHHHcCCCeeeCCCChHHHHHHHHHhHHHHHhCCCEEE-eCCCC
Q psy12849         41 NESSILIMAKKCRVILNCVGPYTWYGEAVVKACIEAKTHHVDITGEPYFMEYMQYEYNTRAQESEVCVV-SACGI  114 (138)
Q Consensus        41 d~~~L~~~~~~~dvVIn~~GPf~~~~~~v~~Aci~~g~hYvDisge~~~~~~~~~~~~~~A~~~gv~iv-~~~G~  114 (138)
                      ...++.+.-...|+.|-++ |... ...+++.|++.|++-|=+|+-.+  ...+.++-+.|++.|+.++ |.||+
T Consensus        26 ~~~~~~~~p~~~DlavI~v-Pa~~-v~~~v~e~~~~Gv~~viis~Gf~--~~~~~~l~~~A~~~g~rliGPNcG~   96 (480)
T 3dmy_A           26 RWDSACQKLPDANLALISV-AGEY-AAELANQALDRNLNVMMFSDNVT--LEDEIQLKTRAREKGLLVMGPDCGT   96 (480)
T ss_dssp             SHHHHHHHSTTCCEEEECS-CHHH-HHHHHHHHHHTTCEEEECCCCCC--HHHHHHHHHHHHHTTCCEECSSCCE
T ss_pred             hHHHHHhcCCCCCEEEEec-CHHH-HHHHHHHHHhcCCCEEEECCCCC--HHHHHHHHHHHHHcCCEEEecCccc
Confidence            4567777777899999999 5443 35789999999999655555444  3334577788999999888 66765

>1oaa_A Sepiapterin reductase; tetrahydrobiopterin, oxidoreductase; HET: NAP; 1.25A {Mus musculus} SCOP: c.2.1.2 PDB: 1nas_A* 1sep_A* 1z6z_A*

Probab=84.43  E-value=0.56  Score=35.14  Aligned_cols=33  Identities=6%  Similarity=0.060  Sum_probs=27.0

Q ss_pred             CCcceEEeeCCCHHHHHHHHhc---------Cc--EEEecCCCc
Q psy12849         30 RTNRTTVVNTINESSILIMAKK---------CR--VILNCVGPY   62 (138)
Q Consensus        30 ~~~~~~~~D~~d~~~L~~~~~~---------~d--vVIn~~GPf   62 (138)
                      .++.++.+|+.|++++.++++.         .|  ++||++|-+
T Consensus        60 ~~~~~~~~Dv~~~~~v~~~~~~~~~~~~~g~~d~~~lvnnAg~~  103 (259)
T 1oaa_A           60 LKVVLAAADLGTEAGVQRLLSAVRELPRPEGLQRLLLINNAATL  103 (259)
T ss_dssp             SEEEEEECCTTSHHHHHHHHHHHHHSCCCTTCCEEEEEECCCCC
T ss_pred             CeEEEEecCCCCHHHHHHHHHHHHhccccccCCccEEEECCccc
Confidence            3578899999999999888764         37  999999853

>1f6y_A 5-methyltetrahydrofolate corrinoid/iron sulfur PR methyltransferase; carbon dioxide fixation, cobalamin, methyltatrahydrofolate; 2.20A {Moorella thermoacetica} SCOP: c.1.21.2 PDB: 2e7f_A* 4djd_A* 4dje_A* 4djf_A* 2ogy_A*

Probab=84.38  E-value=8  Score=29.93  Aligned_cols=98  Identities=11%  Similarity=0.032  Sum_probs=0.0

Q ss_pred             CcccchHHHHHHHHH---HHHHHHhhhhcCCCCcceEEee-----CCCHHHHHHHHh------cCcEEEecCCCccchhH
Q psy12849          2 QNVNVNQKLTADILK---IFLFLQKASWFGVRTNRTTVVN-----TINESSILIMAK------KCRVILNCVGPYTWYGE   67 (138)
Q Consensus         2 ~~~~~~~~~~~d~~~---~~~~~~~a~~~~~~~~~~~~~D-----~~d~~~L~~~~~------~~dvVIn~~GPf~~~~~   67 (138)
                      ..+||...--.|--+   +-.++++|++.-.....++-+.     ++.++++.+++.      +.-+.|++--|      
T Consensus         6 ErlNvTpdsFsdgg~~~~~~~a~~~a~~~v~~GAdiIDIg~g~~~v~~~ee~~rvv~~i~~~~~~pisIDT~~~------   79 (262)
T 1f6y_A            6 ERINGMFGDIKRAIQERDPAPVQEWARRQEEGGARALDLNVGPAVQDKVSAMEWLVEVTQEVSNLTLCLDSTNI------   79 (262)
T ss_dssp             CCSBTTSHHHHHHHHHTCHHHHHHHHHHHHHHTCSEEEEBCC----CHHHHHHHHHHHHHTTCCSEEEEECSCH------
T ss_pred             ecccCCchhHHHhhhcCCHHHHHHHHHHHHHCCCcEEEECCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCH------


Q ss_pred             HHHHHHHHc--CCCee-eCCCChHHHHHHHHHhHHHHHhCCCEEE
Q psy12849         68 AVVKACIEA--KTHHV-DITGEPYFMEYMQYEYNTRAQESEVCVV  109 (138)
Q Consensus        68 ~v~~Aci~~--g~hYv-Disge~~~~~~~~~~~~~~A~~~gv~iv  109 (138)
                      .++++|+++  |.+.| |++|...-++.+.    +.+++.|+.++
T Consensus        80 ~v~~aAl~a~~Ga~iINdvs~~~d~~~~~~----~~~a~~~~~vv  120 (262)
T 1f6y_A           80 KAIEAGLKKCKNRAMINSTNAEREKVEKLF----PLAVEHGAALI  120 (262)
T ss_dssp             HHHHHHHHHCSSCEEEEEECSCHHHHHHHH----HHHHHTTCEEE
T ss_pred             HHHHHHHhhCCCCCEEEECCCCcccHHHHH----HHHHHhCCcEE

>2z5l_A Tylkr1, tylactone synthase starter module and modules 1 & 2; short-chain dehydrogenase/reductase, rossman fold; 1.95A {Streptomyces fradiae}

Probab=84.19  E-value=0.68  Score=39.21  Aligned_cols=32  Identities=3%  Similarity=0.117  Sum_probs=29.1

Q ss_pred             CcceEEeeCCCHHHHHHHHhc--CcEEEecCCCc
Q psy12849         31 TNRTTVVNTINESSILIMAKK--CRVILNCVGPY   62 (138)
Q Consensus        31 ~~~~~~~D~~d~~~L~~~~~~--~dvVIn~~GPf   62 (138)
                      ++.++.+|+.|.+++.+++++  .|+|||++|..
T Consensus       313 ~v~~~~~Dvtd~~~v~~~~~~~~ld~VVh~AGv~  346 (511)
T 2z5l_A          313 EVVHAACDVAERDALAALVTAYPPNAVFHTAGIL  346 (511)
T ss_dssp             EEEEEECCSSCHHHHHHHHHHSCCSEEEECCCCC
T ss_pred             EEEEEEeCCCCHHHHHHHHhcCCCcEEEECCccc
Confidence            578899999999999999987  99999999954

>2b69_A UDP-glucuronate decarboxylase 1; UDP-glucoronic acid decarboxylase, structural genomics, STRU genomics consortium, SGC, lyase; HET: MSE NAD UDP; 1.21A {Homo sapiens} SCOP: c.2.1.2 PDB: 4ef7_A*

Probab=84.05  E-value=0.75  Score=35.64  Aligned_cols=48  Identities=4%  Similarity=-0.063  Sum_probs=35.3

Q ss_pred             CCcceEEeeCCCHHHHHHHHhcCcEEEecCCCccch----------------hHHHHHHHHHcCCCeee
Q psy12849         30 RTNRTTVVNTINESSILIMAKKCRVILNCVGPYTWY----------------GEAVVKACIEAKTHHVD   82 (138)
Q Consensus        30 ~~~~~~~~D~~d~~~L~~~~~~~dvVIn~~GPf~~~----------------~~~v~~Aci~~g~hYvD   82 (138)
                      .+++++..|+.+.     .+.++|+||||+|+....                ...++++|.+.|+++|=
T Consensus        75 ~~~~~~~~D~~~~-----~~~~~d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~v~  138 (343)
T 2b69_A           75 ENFELINHDVVEP-----LYIEVDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGARLLL  138 (343)
T ss_dssp             TTEEEEECCTTSC-----CCCCCSEEEECCSCCSHHHHTTCHHHHHHHHHHHHHHHHHHHHHHTCEEEE
T ss_pred             CceEEEeCccCCh-----hhcCCCEEEECccccCchhhhhCHHHHHHHHHHHHHHHHHHHHHhCCcEEE
Confidence            4577888898775     257899999999975421                24688999998876654

>1b7g_O Protein (glyceraldehyde 3-phosphate dehydrogenase; archaea, hyperthermophIle, GAPDH, hyperthermophilic dehydrog oxidoreductase; 2.05A {Sulfolobus solfataricus} SCOP: c.2.1.3 d.81.1.1

Probab=83.86  E-value=1.3  Score=35.67  Aligned_cols=38  Identities=8%  Similarity=0.058  Sum_probs=32.2

Q ss_pred             HHHhcCcEEEecCCCccchhHHHHHHHHHcCCCeeeCCCC
Q psy12849         47 IMAKKCRVILNCVGPYTWYGEAVVKACIEAKTHHVDITGE   86 (138)
Q Consensus        47 ~~~~~~dvVIn~~GPf~~~~~~v~~Aci~~g~hYvDisge   86 (138)
                      .+++++|+|+.|+|++..  ...++.++++|+.-||.+++
T Consensus        73 ~l~~~vDvV~~aTp~~~s--~~~a~~~~~aG~kvV~~sa~  110 (340)
T 1b7g_O           73 DLIKTSDIVVDTTPNGVG--AQYKPIYLQLQRNAIFQGGE  110 (340)
T ss_dssp             HHHHHCSEEEECCSTTHH--HHHHHHHHHTTCEEEECTTS
T ss_pred             HhhcCCCEEEECCCCchh--HHHHHHHHHcCCeEEEeCCC
Confidence            445689999999987653  46789999999999999998

>1vjp_A MYO-inositol-1-phosphate synthase-related protein; TM1419, structural genomics, JCSG, PSI, protein structure initiative; HET: NAD; 1.70A {Thermotoga maritima} PDB: 3cin_A*

Probab=83.80  E-value=0.56  Score=39.08  Aligned_cols=42  Identities=14%  Similarity=0.128  Sum_probs=27.1

Q ss_pred             HHHHHHHH-----cCCCeeeCCCChHHHHHHHHHhHHHHHhCCCEEEeCC
Q psy12849         68 AVVKACIE-----AKTHHVDITGEPYFMEYMQYEYNTRAQESEVCVVSAC  112 (138)
Q Consensus        68 ~v~~Aci~-----~g~hYvDisge~~~~~~~~~~~~~~A~~~gv~iv~~~  112 (138)
                      --+.||++     +||.||..+-.  ++-.. -.+-+.|+++|+.++---
T Consensus       174 ~YA~AAl~~~~~~aG~~fVN~~P~--~ia~~-P~~~ela~~~gvpi~GDD  220 (394)
T 1vjp_A          174 VYAYAAALYANKRGGAAFVNVIPT--FIAND-PAFVELAKENNLVVFGDD  220 (394)
T ss_dssp             HHHHHHHHHHHHHTCEEEEECSSS--CSTTC-HHHHHHHHHTTEEEECSS
T ss_pred             HHHHHHHhhccccCCcceEecCCc--cccCC-HHHHHHHHHcCCCEEccc
Confidence            34689999     99999986543  21100 133366788999876544

>2duw_A Putative COA-binding protein; ligand binding protein; NMR {Klebsiella pneumoniae}

Probab=83.63  E-value=0.76  Score=32.34  Aligned_cols=56  Identities=13%  Similarity=0.017  Sum_probs=39.6

Q ss_pred             HHHHHhcCcEEEecCCCccchhHHHHHHHHHcCCCee--eCCCChHHHHHHHHHhHHHHHhCCCEEE
Q psy12849         45 ILIMAKKCRVILNCVGPYTWYGEAVVKACIEAKTHHV--DITGEPYFMEYMQYEYNTRAQESEVCVV  109 (138)
Q Consensus        45 L~~~~~~~dvVIn~~GPf~~~~~~v~~Aci~~g~hYv--Disge~~~~~~~~~~~~~~A~~~gv~iv  109 (138)
                      +.++-...|+++=|+ |- .....+++.|++.|+..+  +.+..   .    .+.-+.|+++|+.++
T Consensus        64 l~el~~~~Dlvii~v-p~-~~v~~v~~~~~~~g~~~i~i~~~~~---~----~~l~~~a~~~Gi~~i  121 (145)
T 2duw_A           64 LADVPEKVDMVDVFR-NS-EAAWGVAQEAIAIGAKTLWLQLGVI---N----EQAAVLAREAGLSVV  121 (145)
T ss_dssp             TTTCSSCCSEEECCS-CS-THHHHHHHHHHHHTCCEEECCTTCC---C----HHHHHHHHTTTCEEE
T ss_pred             HHHcCCCCCEEEEEe-CH-HHHHHHHHHHHHcCCCEEEEcCChH---H----HHHHHHHHHcCCEEE
Confidence            444556899999999 53 444688999999987654  43222   2    345578899999998

>1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid, SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A* 3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3oq1_A* 3qqp_A* 3pdj_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3tfq_A* 3ch6_A* 2irw_A* 2ilt_A* ...

Probab=83.50  E-value=1.7  Score=32.97  Aligned_cols=32  Identities=0%  Similarity=-0.122  Sum_probs=27.2

Q ss_pred             CCcceEEeeCCCHHHHHHHHh-------cCcEEEec-CCC
Q psy12849         30 RTNRTTVVNTINESSILIMAK-------KCRVILNC-VGP   61 (138)
Q Consensus        30 ~~~~~~~~D~~d~~~L~~~~~-------~~dvVIn~-~GP   61 (138)
                      .++.++.+|+.|++++.++++       +.|++||+ +|.
T Consensus        78 ~~~~~~~~Dl~d~~~v~~~~~~~~~~~g~iD~li~naag~  117 (286)
T 1xu9_A           78 ASAHYIAGTMEDMTFAEQFVAQAGKLMGGLDMLILNHITN  117 (286)
T ss_dssp             SEEEEEECCTTCHHHHHHHHHHHHHHHTSCSEEEECCCCC
T ss_pred             CceEEEeCCCCCHHHHHHHHHHHHHHcCCCCEEEECCccC
Confidence            357889999999999998887       68999999 564

>1e7w_A Pteridine reductase; dihydrofolate reductase, shortchain dehydrogenase, methotrexate resistance, oxidoreductase; HET: NDP MTX; 1.75A {Leishmania major} SCOP: c.2.1.2 PDB: 1w0c_A* 1e92_A* 2bf7_A* 2bfa_A* 2bfm_A* 2bfo_A* 2bfp_A* 2p8k_A* 3h4v_A* 2xox_A 1p33_A*

Probab=83.48  E-value=0.67  Score=35.64  Aligned_cols=33  Identities=15%  Similarity=0.300  Sum_probs=28.3

Q ss_pred             CCcceEEeeCCCHH-----------------HHHHHHh-------cCcEEEecCCCc
Q psy12849         30 RTNRTTVVNTINES-----------------SILIMAK-------KCRVILNCVGPY   62 (138)
Q Consensus        30 ~~~~~~~~D~~d~~-----------------~L~~~~~-------~~dvVIn~~GPf   62 (138)
                      .++.++++|+.|++                 ++.++++       +.|++||++|-.
T Consensus        60 ~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~iD~lvnnAg~~  116 (291)
T 1e7w_A           60 NSAITVQADLSNVATAPVSGADGSAPVTLFTRCAELVAACYTHWGRCDVLVNNASSF  116 (291)
T ss_dssp             TCEEEEECCCSSSCBCCCC----CCCBCHHHHHHHHHHHHHHHHSCCCEEEECCCCC
T ss_pred             CeeEEEEeecCCcccccccccccccccchHHHHHHHHHHHHHhcCCCCEEEECCCCC
Confidence            46788999999999                 8888887       679999999853

>3mtj_A Homoserine dehydrogenase; rossmann-fold, PSI, MCSG, structural genomics, midwest cente structural genomics; 2.15A {Thiobacillus denitrificans}

Probab=83.38  E-value=3  Score=34.95  Aligned_cols=62  Identities=16%  Similarity=0.140  Sum_probs=43.2

Q ss_pred             HHHHh--cCcEEEecCCCccchhHHHHHHHHHcCCCeeeCCCChHHHHHHHHHhHHHHHhCCCEEEe
Q psy12849         46 LIMAK--KCRVILNCVGPYTWYGEAVVKACIEAKTHHVDITGEPYFMEYMQYEYNTRAQESEVCVVS  110 (138)
Q Consensus        46 ~~~~~--~~dvVIn~~GPf~~~~~~v~~Aci~~g~hYvDisge~~~~~~~~~~~~~~A~~~gv~iv~  110 (138)
                      .++++  ..|+|+.|.|+...+ ...++.|+++|.|-+--.-  .....-..++-+.|+++|+.+.-
T Consensus        71 ~ell~d~diDvVve~tp~~~~h-~~~~~~AL~aGKhVvtenk--al~a~~~~eL~~~A~~~gv~l~~  134 (444)
T 3mtj_A           71 FDVVDDPEIDIVVELIGGLEPA-RELVMQAIANGKHVVTANK--HLVAKYGNEIFAAAQAKGVMVTF  134 (444)
T ss_dssp             HHHHTCTTCCEEEECCCSSTTH-HHHHHHHHHTTCEEEECCH--HHHHHHHHHHHHHHHHHTCCEEC
T ss_pred             HHHhcCCCCCEEEEcCCCchHH-HHHHHHHHHcCCEEEECCc--ccCHHHHHHHHHHHHHhCCeEEE
Confidence            44554  479999999753333 5788999999999985433  33222224677889999999863

>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}

Probab=83.18  E-value=1.2  Score=34.44  Aligned_cols=32  Identities=9%  Similarity=0.133  Sum_probs=27.7

Q ss_pred             CCcceEEeeCCCHHHHHHHHhc-------CcEEEecCCC
Q psy12849         30 RTNRTTVVNTINESSILIMAKK-------CRVILNCVGP   61 (138)
Q Consensus        30 ~~~~~~~~D~~d~~~L~~~~~~-------~dvVIn~~GP   61 (138)
                      .++.++++|++|++++.++++.       .|++||+||-
T Consensus        56 ~~~~~~~~Dvt~~~~v~~~~~~~~~~~G~iDiLVNNAGi   94 (254)
T 4fn4_A           56 KEVLGVKADVSKKKDVEEFVRRTFETYSRIDVLCNNAGI   94 (254)
T ss_dssp             CCEEEEECCTTSHHHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred             CcEEEEEccCCCHHHHHHHHHHHHHHcCCCCEEEECCcc
Confidence            4678899999999999988874       6999999983

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=83.16  E-value=8.9  Score=26.25  Aligned_cols=86  Identities=9%  Similarity=0.013  Sum_probs=53.3

Q ss_pred             cceEEeeCCCHHHHHHH-HhcCcEEEecCCCccchhHHHHHHHHH-cCCCeee-CCCChHHHHHHHHHhHHHHHhCCCEE
Q psy12849         32 NRTTVVNTINESSILIM-AKKCRVILNCVGPYTWYGEAVVKACIE-AKTHHVD-ITGEPYFMEYMQYEYNTRAQESEVCV  108 (138)
Q Consensus        32 ~~~~~~D~~d~~~L~~~-~~~~dvVIn~~GPf~~~~~~v~~Aci~-~g~hYvD-isge~~~~~~~~~~~~~~A~~~gv~i  108 (138)
                      ...+..|..+++.+.+. ++++|+||.|+|+.. ....+.+.+-. .|..++= .+..+...        +..++.|+. 
T Consensus        64 ~~~~~~d~~~~~~l~~~~~~~ad~Vi~~~~~~~-~~~~~~~~~~~~~~~~~iv~~~~~~~~~--------~~l~~~G~~-  133 (155)
T 2g1u_A           64 GFTVVGDAAEFETLKECGMEKADMVFAFTNDDS-TNFFISMNARYMFNVENVIARVYDPEKI--------KIFEENGIK-  133 (155)
T ss_dssp             SEEEESCTTSHHHHHTTTGGGCSEEEECSSCHH-HHHHHHHHHHHTSCCSEEEEECSSGGGH--------HHHHTTTCE-
T ss_pred             CcEEEecCCCHHHHHHcCcccCCEEEEEeCCcH-HHHHHHHHHHHHCCCCeEEEEECCHHHH--------HHHHHCCCc-
Confidence            44566688888888776 789999999997643 34566666665 5655433 23332222        223445665 


Q ss_pred             EeCCCCccchHhHHHHHHHHHhhhh
Q psy12849        109 VSACGIETLPIDMGVLMLQDSFEGH  133 (138)
Q Consensus       109 v~~~G~d~~p~dl~~~~~~~~~~~~  133 (138)
                      +      ..|..+.+..+++.+.+.
T Consensus       134 v------i~p~~~~a~~l~~~l~~~  152 (155)
T 2g1u_A          134 T------ICPAVLMIEKVKEFIIGS  152 (155)
T ss_dssp             E------ECHHHHHHHHHHHHHHC-
T ss_pred             E------EcHHHHHHHHHHHHHhcc
Confidence            3      257778777777776553

>2ozp_A N-acetyl-gamma-glutamyl-phosphate reductase; amino acid biosynthesis, structural genomics, riken structur genomics/proteomics initiative; 2.01A {Thermus thermophilus}

Probab=83.16  E-value=0.32  Score=39.30  Aligned_cols=37  Identities=5%  Similarity=-0.031  Sum_probs=31.1

Q ss_pred             HhcCcEEEecCCCccchhHHHHHHHHHcCCCeeeCCCCh
Q psy12849         49 AKKCRVILNCVGPYTWYGEAVVKACIEAKTHHVDITGEP   87 (138)
Q Consensus        49 ~~~~dvVIn~~GPf~~~~~~v~~Aci~~g~hYvDisge~   87 (138)
                      ++++|+|+-|+|.+.  ....++.++++|++.||++++.
T Consensus        66 ~~~vDvV~~a~g~~~--s~~~a~~~~~aG~~VId~Sa~~  102 (345)
T 2ozp_A           66 LEPADILVLALPHGV--FAREFDRYSALAPVLVDLSADF  102 (345)
T ss_dssp             CCCCSEEEECCCTTH--HHHTHHHHHTTCSEEEECSSTT
T ss_pred             hcCCCEEEEcCCcHH--HHHHHHHHHHCCCEEEEcCccc
Confidence            378999999997553  3578999999999999999863

>4had_A Probable oxidoreductase protein; structural genomics, protein structure initiative, nysgrc, PSI-biology; 2.00A {Rhizobium etli}

Probab=83.13  E-value=4.8  Score=31.38  Aligned_cols=74  Identities=15%  Similarity=-0.007  Sum_probs=49.2

Q ss_pred             HHHHHh--cCcEEEecCCCccchhHHHHHHHHHcCCCeee---CCCChHHHHHHHHHhHHHHHhCCCEEEeCCCCccchH
Q psy12849         45 ILIMAK--KCRVILNCVGPYTWYGEAVVKACIEAKTHHVD---ITGEPYFMEYMQYEYNTRAQESEVCVVSACGIETLPI  119 (138)
Q Consensus        45 L~~~~~--~~dvVIn~~GPf~~~~~~v~~Aci~~g~hYvD---isge~~~~~~~~~~~~~~A~~~gv~iv~~~G~d~~p~  119 (138)
                      ++++++  +.|+|+-|. |-..+ .+++.+|+++|.|.+=   ++-...-.++    +-+.|+++|+.+..+.=+-..|.
T Consensus        78 ~~ell~~~~iDaV~I~t-P~~~H-~~~~~~al~aGkhVl~EKPla~~~~ea~~----l~~~a~~~~~~l~v~~~~R~~p~  151 (350)
T 4had_A           78 YEEMLASDVIDAVYIPL-PTSQH-IEWSIKAADAGKHVVCEKPLALKAGDIDA----VIAARDRNKVVVTEAYMITYSPV  151 (350)
T ss_dssp             HHHHHHCSSCSEEEECS-CGGGH-HHHHHHHHHTTCEEEECSCCCSSGGGGHH----HHHHHHHHTCCEEECCGGGGSHH
T ss_pred             HHHHhcCCCCCEEEEeC-CCchh-HHHHHHHHhcCCEEEEeCCcccchhhHHH----HHHHHHHcCCceeEeeeeecCHH
Confidence            455564  479999999 65666 4789999999999752   2222222333    33678889999887766555665


Q ss_pred             hHHHH
Q psy12849        120 DMGVL  124 (138)
Q Consensus       120 dl~~~  124 (138)
                      -..+.
T Consensus       152 ~~~~k  156 (350)
T 4had_A          152 WQKVR  156 (350)
T ss_dssp             HHHHH
T ss_pred             HHHhh
Confidence            44443

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=83.09  E-value=5.3  Score=28.06  Aligned_cols=90  Identities=7%  Similarity=-0.069  Sum_probs=54.4

Q ss_pred             CcceEEeeCCCHHHHHHH--HhcCcEEEecCCCccchhHHHHHHHHHcC-CCeee-CCCChHHHHHHHHHhHHHHHhCCC
Q psy12849         31 TNRTTVVNTINESSILIM--AKKCRVILNCVGPYTWYGEAVVKACIEAK-THHVD-ITGEPYFMEYMQYEYNTRAQESEV  106 (138)
Q Consensus        31 ~~~~~~~D~~d~~~L~~~--~~~~dvVIn~~GPf~~~~~~v~~Aci~~g-~hYvD-isge~~~~~~~~~~~~~~A~~~gv  106 (138)
                      ....+..|..+++.+.++  ++++|+||.|++.. .....++..+.+.| ..++- .+.++...        +..++.|+
T Consensus        83 g~~~~~gd~~~~~~l~~~~~~~~ad~vi~~~~~~-~~~~~~~~~~~~~~~~~~ii~~~~~~~~~--------~~l~~~G~  153 (183)
T 3c85_A           83 GRNVISGDATDPDFWERILDTGHVKLVLLAMPHH-QGNQTALEQLQRRNYKGQIAAIAEYPDQL--------EGLLESGV  153 (183)
T ss_dssp             TCCEEECCTTCHHHHHTBCSCCCCCEEEECCSSH-HHHHHHHHHHHHTTCCSEEEEEESSHHHH--------HHHHHHTC
T ss_pred             CCCEEEcCCCCHHHHHhccCCCCCCEEEEeCCCh-HHHHHHHHHHHHHCCCCEEEEEECCHHHH--------HHHHHcCC
Confidence            456677799999888887  88999999999643 33345666666666 33433 33332222        22334465


Q ss_pred             EEEeCCCCccchHhHHHHHHHHHhhhhcC
Q psy12849        107 CVVSACGIETLPIDMGVLMLQDSFEGHSG  135 (138)
Q Consensus       107 ~iv~~~G~d~~p~dl~~~~~~~~~~~~~~  135 (138)
                      ..+.      .|....+..+.+++...++
T Consensus       154 ~~vi------~p~~~~a~~l~~~~~~~~~  176 (183)
T 3c85_A          154 DAAF------NIYSEAGSGFARHVCKQLE  176 (183)
T ss_dssp             SEEE------EHHHHHHHHHHHHHHHHHC
T ss_pred             CEEE------chHHHHHHHHHHHHHHhcC
Confidence            5443      4666666666665555544

>3ip3_A Oxidoreductase, putative; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.14A {Thermotoga maritima}

Probab=82.88  E-value=5.6  Score=31.06  Aligned_cols=73  Identities=15%  Similarity=0.102  Sum_probs=46.6

Q ss_pred             HHHHHh--cCcEEEecCCCccchhHHHHHHHHHcCCCeee---CCCChHHHHHHHHHhHHHHHhCCCE--EEeCCCCccc
Q psy12849         45 ILIMAK--KCRVILNCVGPYTWYGEAVVKACIEAKTHHVD---ITGEPYFMEYMQYEYNTRAQESEVC--VVSACGIETL  117 (138)
Q Consensus        45 L~~~~~--~~dvVIn~~GPf~~~~~~v~~Aci~~g~hYvD---isge~~~~~~~~~~~~~~A~~~gv~--iv~~~G~d~~  117 (138)
                      ++++++  +.|+|+-|. |-..+ .+++.+|+++|.|-+=   ++-+..-.+    ++-+.|+++|+.  +..+.-+-..
T Consensus        59 ~~~ll~~~~vD~V~I~t-p~~~H-~~~~~~al~aGkhVl~EKPla~~~~ea~----~l~~~a~~~g~~~~~~v~~~~R~~  132 (337)
T 3ip3_A           59 WWEMLEKEKPDILVINT-VFSLN-GKILLEALERKIHAFVEKPIATTFEDLE----KIRSVYQKVRNEVFFTAMFGIRYR  132 (337)
T ss_dssp             HHHHHHHHCCSEEEECS-SHHHH-HHHHHHHHHTTCEEEECSSSCSSHHHHH----HHHHHHHHHTTTCCEEECCGGGGS
T ss_pred             HHHHhcCCCCCEEEEeC-CcchH-HHHHHHHHHCCCcEEEeCCCCCCHHHHH----HHHHHHHHhCCceEEEecccccCC
Confidence            445554  489999998 65556 4789999999999762   222222222    444678888987  5555544445


Q ss_pred             hHhHHH
Q psy12849        118 PIDMGV  123 (138)
Q Consensus       118 p~dl~~  123 (138)
                      |.-..+
T Consensus       133 p~~~~~  138 (337)
T 3ip3_A          133 PHFLTA  138 (337)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            544443

>1dhr_A Dihydropteridine reductase; oxidoreductase(acting on NADH or NADPH); HET: NAD; 2.30A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1dir_A* 1hdr_A*

Probab=82.85  E-value=0.51  Score=35.05  Aligned_cols=31  Identities=13%  Similarity=0.084  Sum_probs=26.1

Q ss_pred             cceEEeeCCCHHHHHHHHh---------cCcEEEecCCCc
Q psy12849         32 NRTTVVNTINESSILIMAK---------KCRVILNCVGPY   62 (138)
Q Consensus        32 ~~~~~~D~~d~~~L~~~~~---------~~dvVIn~~GPf   62 (138)
                      ..++.+|+.|++++.++++         +.|++||++|..
T Consensus        48 ~~~~~~D~~~~~~v~~~~~~~~~~~~~g~iD~lv~~Ag~~   87 (241)
T 1dhr_A           48 SVIVKMTDSFTEQADQVTAEVGKLLGDQKVDAILCVAGGW   87 (241)
T ss_dssp             EEECCCCSCHHHHHHHHHHHHHHHHTTCCEEEEEECCCCC
T ss_pred             cEEEEcCCCCHHHHHHHHHHHHHHhCCCCCCEEEEccccc
Confidence            3567899999999998887         579999999943

>2q02_A Putative cytoplasmic protein; structural genomics, joint CEN structural genomics, JCSG, protein structure initiative; 2.40A {Salmonella typhimurium LT2} SCOP: c.1.15.4

Probab=82.65  E-value=7.7  Score=28.54  Aligned_cols=96  Identities=8%  Similarity=0.048  Sum_probs=62.0

Q ss_pred             HHHHHHhhhhcCCCCcceEEe-------eCCCHHHHHHHHhcCcEEEecCC---Ccc-------chhHHHHHHHHHcCCC
Q psy12849         17 IFLFLQKASWFGVRTNRTTVV-------NTINESSILIMAKKCRVILNCVG---PYT-------WYGEAVVKACIEAKTH   79 (138)
Q Consensus        17 ~~~~~~~a~~~~~~~~~~~~~-------D~~d~~~L~~~~~~~dvVIn~~G---Pf~-------~~~~~v~~Aci~~g~h   79 (138)
                      +...++.+++.|.+.+++..-       +-.+.+++.+.+++..+-+.+..   |+.       ..-.+.++.|.+.|+.
T Consensus        21 ~~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~lG~~  100 (272)
T 2q02_A           21 IEAFFRLVKRLEFNKVELRNDMPSGSVTDDLNYNQVRNLAEKYGLEIVTINAVYPFNQLTEEVVKKTEGLLRDAQGVGAR  100 (272)
T ss_dssp             HHHHHHHHHHTTCCEEEEETTSTTSSTTTTCCHHHHHHHHHHTTCEEEEEEEETTTTSCCHHHHHHHHHHHHHHHHHTCS
T ss_pred             HHHHHHHHHHcCCCEEEeeccccccccccccCHHHHHHHHHHcCCeEEechhhhccCCcHHHHHHHHHHHHHHHHHhCCC
Confidence            344567777777765555421       23567889999999877664433   332       1225788899999999


Q ss_pred             eeeC-CCC-----hHHH-HHHHHHhHHHHHhCCCEEEeCC
Q psy12849         80 HVDI-TGE-----PYFM-EYMQYEYNTRAQESEVCVVSAC  112 (138)
Q Consensus        80 YvDi-sge-----~~~~-~~~~~~~~~~A~~~gv~iv~~~  112 (138)
                      +|=+ .|.     .... .+...++-+.|++.|+++...-
T Consensus       101 ~v~~~~g~~~~~~~~~~~~~~l~~l~~~a~~~gv~l~~E~  140 (272)
T 2q02_A          101 ALVLCPLNDGTIVPPEVTVEAIKRLSDLFARYDIQGLVEP  140 (272)
T ss_dssp             EEEECCCCSSBCCCHHHHHHHHHHHHHHHHTTTCEEEECC
T ss_pred             EEEEccCCCchhHHHHHHHHHHHHHHHHHHHcCCEEEEEe
Confidence            9875 332     1222 3333567788899999998753

>1tx2_A DHPS, dihydropteroate synthase; folate biosynthesis, pterine, MA transferase; HET: 680; 1.83A {Bacillus anthracis} SCOP: c.1.21.1 PDB: 1tww_A* 1twz_A* 1tx0_A* 1tws_A* 3h21_A* 3h22_A* 3h23_A* 3h24_A* 3h26_A* 3h2a_A* 3h2c_A* 3h2e_A* 3h2f_A* 3h2m_A* 3h2n_A* 3h2o_A* 3tya_A* 3tyb_A* 3tyc_A* 3tyd_A* ...

Probab=82.65  E-value=5.2  Score=31.83  Aligned_cols=85  Identities=18%  Similarity=0.139  Sum_probs=0.0

Q ss_pred             HHHHHHHHhhhhcCCCCcceEEeeCCC----------HHHHHHHH------h---cCcEEEecCCCccchhHHHHHHHHH
Q psy12849         15 LKIFLFLQKASWFGVRTNRTTVVNTIN----------ESSILIMA------K---KCRVILNCVGPYTWYGEAVVKACIE   75 (138)
Q Consensus        15 ~~~~~~~~~a~~~~~~~~~~~~~D~~d----------~~~L~~~~------~---~~dvVIn~~GPf~~~~~~v~~Aci~   75 (138)
                      .++-.++++|++.-.....++-+....          ++++.+++      +   +.-+.|++--|      .++++|++
T Consensus        60 ~~~~~a~~~a~~~v~~GAdiIDIGgeStrPga~~v~~~eE~~RvvpvI~~l~~~~~vpiSIDT~~~------~V~~aAl~  133 (297)
T 1tx2_A           60 NEVDAAVRHAKEMRDEGAHIIDIGGESTRPGFAKVSVEEEIKRVVPMIQAVSKEVKLPISIDTYKA------EVAKQAIE  133 (297)
T ss_dssp             HHHHHHHHHHHHHHHTTCSEEEEESCC----CCCCCHHHHHHHHHHHHHHHHHHSCSCEEEECSCH------HHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHcCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHHhcCCceEEEeCCCH------HHHHHHHH


Q ss_pred             cCCCee-eCCCChHHHHHHHHHhHHHHHhCCCEEEe
Q psy12849         76 AKTHHV-DITGEPYFMEYMQYEYNTRAQESEVCVVS  110 (138)
Q Consensus        76 ~g~hYv-Disge~~~~~~~~~~~~~~A~~~gv~iv~  110 (138)
                      +|.+.| |++|.. +..++.    +.+++.|+.++.
T Consensus       134 aGa~iINdvsg~~-~d~~m~----~~aa~~g~~vVl  164 (297)
T 1tx2_A          134 AGAHIINDIWGAK-AEPKIA----EVAAHYDVPIIL  164 (297)
T ss_dssp             HTCCEEEETTTTS-SCTHHH----HHHHHHTCCEEE
T ss_pred             cCCCEEEECCCCC-CCHHHH----HHHHHhCCcEEE

>2d59_A Hypothetical protein PH1109; COA binding, structural genomics; 1.65A {Pyrococcus horikoshii} SCOP: c.2.1.8 PDB: 2d5a_A* 2e6u_X* 3qa9_A 3q9n_A* 3q9u_A*

Probab=82.62  E-value=0.57  Score=32.94  Aligned_cols=58  Identities=19%  Similarity=0.151  Sum_probs=40.5

Q ss_pred             HHHHHhcCcEEEecCCCccchhHHHHHHHHHcCCCeeeCCCChHHHHHHHHHhHHHHHhCCCEEE
Q psy12849         45 ILIMAKKCRVILNCVGPYTWYGEAVVKACIEAKTHHVDITGEPYFMEYMQYEYNTRAQESEVCVV  109 (138)
Q Consensus        45 L~~~~~~~dvVIn~~GPf~~~~~~v~~Aci~~g~hYvDisge~~~~~~~~~~~~~~A~~~gv~iv  109 (138)
                      +.++-...|+++=|+ |-. ....+++.|++.|+..+=+... .+.    .++-+.|+++|+.++
T Consensus        71 l~~l~~~vDlvvi~v-p~~-~~~~vv~~~~~~gi~~i~~~~g-~~~----~~l~~~a~~~Gi~vv  128 (144)
T 2d59_A           71 VLDIPDKIEVVDLFV-KPK-LTMEYVEQAIKKGAKVVWFQYN-TYN----REASKKADEAGLIIV  128 (144)
T ss_dssp             GGGCSSCCSEEEECS-CHH-HHHHHHHHHHHHTCSEEEECTT-CCC----HHHHHHHHHTTCEEE
T ss_pred             HHHcCCCCCEEEEEe-CHH-HHHHHHHHHHHcCCCEEEECCC-chH----HHHHHHHHHcCCEEE
Confidence            444555799999999 543 4468899999999987633211 112    355578999999987

>2fr1_A Erythromycin synthase, eryai; short chain dehydrogenase/reductase, oxidoreductase; HET: NDP; 1.79A {Saccharopolyspora erythraea} SCOP: c.2.1.2 c.2.1.2 PDB: 2fr0_A*

Probab=82.37  E-value=0.94  Score=37.97  Aligned_cols=33  Identities=3%  Similarity=0.110  Sum_probs=29.4

Q ss_pred             CCcceEEeeCCCHHHHHHHHhcC------cEEEecCCCc
Q psy12849         30 RTNRTTVVNTINESSILIMAKKC------RVILNCVGPY   62 (138)
Q Consensus        30 ~~~~~~~~D~~d~~~L~~~~~~~------dvVIn~~GPf   62 (138)
                      .++.++.+|+.|++++.+++++.      |+|||++|..
T Consensus       279 ~~v~~~~~Dv~d~~~v~~~~~~i~~~g~ld~VIh~AG~~  317 (486)
T 2fr1_A          279 ARTTVAACDVTDRESVRELLGGIGDDVPLSAVFHAAATL  317 (486)
T ss_dssp             CEEEEEECCTTCHHHHHHHHHTSCTTSCEEEEEECCCCC
T ss_pred             CEEEEEEeCCCCHHHHHHHHHHHHhcCCCcEEEECCccC
Confidence            35788999999999999999987      9999999954

>3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B*

Probab=82.19  E-value=0.21  Score=39.31  Aligned_cols=69  Identities=20%  Similarity=0.254  Sum_probs=42.3

Q ss_pred             hcCcEEEecCCCccchhH--HHHHHHHHcCCCeeeCCCChHHHHHHHHHhHHHHHhCCCE-EEeCCCCccchHhHHHHHH
Q psy12849         50 KKCRVILNCVGPYTWYGE--AVVKACIEAKTHHVDITGEPYFMEYMQYEYNTRAQESEVC-VVSACGIETLPIDMGVLML  126 (138)
Q Consensus        50 ~~~dvVIn~~GPf~~~~~--~v~~Aci~~g~hYvDisge~~~~~~~~~~~~~~A~~~gv~-iv~~~G~d~~p~dl~~~~~  126 (138)
                      +++|+||||. |-...++  ++-...+..|...+|+...|..+.     +-.+|+++|+. +++|.+       |+.+.+
T Consensus       186 ~~aDiIInaT-p~gm~~~~~~l~~~~l~~~~~V~DlvY~P~~T~-----ll~~A~~~G~~~~~~Gl~-------Mlv~Qa  252 (281)
T 3o8q_A          186 QSYDVIINST-SASLDGELPAIDPVIFSSRSVCYDMMYGKGYTV-----FNQWARQHGCAQAIDGLG-------MLVGQA  252 (281)
T ss_dssp             SCEEEEEECS-CCCC----CSCCGGGEEEEEEEEESCCCSSCCH-----HHHHHHHTTCSEEECTHH-------HHHHHH
T ss_pred             CCCCEEEEcC-cCCCCCCCCCCCHHHhCcCCEEEEecCCCccCH-----HHHHHHHCCCCEEECcHH-------HHHHHH
Confidence            5789999999 4432221  111234567888899988754332     22568899987 777655       445545


Q ss_pred             HHHhh
Q psy12849        127 QDSFE  131 (138)
Q Consensus       127 ~~~~~  131 (138)
                      +.+|+
T Consensus       253 ~~~f~  257 (281)
T 3o8q_A          253 AESFM  257 (281)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            54444

>1t4b_A Aspartate-semialdehyde dehydrogenase; asadh, HOSR, lysine biosynthesis, NADP+ oxidoreductase (phosphorylating), domain movement; 1.60A {Escherichia coli} SCOP: c.2.1.3 d.81.1.1 PDB: 1t4d_A 1brm_A 1gl3_A* 1nwc_A 1ta4_A 1tb4_A 1ps8_A 1pr3_A 1oza_A 1pqu_A* 1pqp_A 1nwh_A* 1nx6_A* 1pu2_A* 1q2x_A*

Probab=82.16  E-value=3  Score=33.92  Aligned_cols=48  Identities=17%  Similarity=0.261  Sum_probs=35.6

Q ss_pred             ceEEeeCCCHHHHHHHHhcCcEEEecCCCccchhHHHHHHHHHcCC--CeeeCCCC
Q psy12849         33 RTTVVNTINESSILIMAKKCRVILNCVGPYTWYGEAVVKACIEAKT--HHVDITGE   86 (138)
Q Consensus        33 ~~~~~D~~d~~~L~~~~~~~dvVIn~~GPf~~~~~~v~~Aci~~g~--hYvDisge   86 (138)
                      +....+..+++.    ++++|+|+.|+|.+  .....+...+++|+  -.||.+++
T Consensus        51 ~i~~~~~~~~~~----~~~~DvVf~a~g~~--~s~~~a~~~~~~G~k~vVID~ss~  100 (367)
T 1t4b_A           51 TGTLQDAFDLEA----LKALDIIVTCQGGD--YTNEIYPKLRESGWQGYWIDAASS  100 (367)
T ss_dssp             CCBCEETTCHHH----HHTCSEEEECSCHH--HHHHHHHHHHHTTCCCEEEECSST
T ss_pred             ceEEEecCChHH----hcCCCEEEECCCch--hHHHHHHHHHHCCCCEEEEcCChh
Confidence            344445555554    36999999999744  34678899999998  78999875

>3p6l_A Sugar phosphate isomerase/epimerase; TIM barrel, structural genomics, joint center for structural genomics, JCSG; HET: CIT; 1.85A {Parabacteroides distasonis}

Probab=82.06  E-value=2.1  Score=31.76  Aligned_cols=92  Identities=10%  Similarity=-0.027  Sum_probs=62.6

Q ss_pred             HHHHHHhhhhcCCCCcceEEee--------------C--CCHHHHHHHHhcCcEEEecCCCccc----hhHHHHHHHHHc
Q psy12849         17 IFLFLQKASWFGVRTNRTTVVN--------------T--INESSILIMAKKCRVILNCVGPYTW----YGEAVVKACIEA   76 (138)
Q Consensus        17 ~~~~~~~a~~~~~~~~~~~~~D--------------~--~d~~~L~~~~~~~dvVIn~~GPf~~----~~~~v~~Aci~~   76 (138)
                      +-.+++.+.+.|.+.+++....              .  .+.+++.+.++...+-+.+.+|+..    .-.+.++.|.+.
T Consensus        24 ~~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~i~~~~~~~~~~~~~~~~~i~~A~~l  103 (262)
T 3p6l_A           24 LTEALDKTQELGLKYIEIYPGHKLGGKWGDKVFDFNLDAQTQKEIKELAASKGIKIVGTGVYVAEKSSDWEKMFKFAKAM  103 (262)
T ss_dssp             HHHHHHHHHHTTCCEEEECTTEECCGGGTTCEESTTCCHHHHHHHHHHHHHTTCEEEEEEEECCSSTTHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHcCCCEEeecCCcccccccccccccccCCHHHHHHHHHHHHHcCCeEEEEeccCCccHHHHHHHHHHHHHc
Confidence            4456777778777555544211              1  1357788999998888888777642    235789999999


Q ss_pred             CCCeeeCCCChHHHHHHHHHhHHHHHhCCCEEEeCC
Q psy12849         77 KTHHVDITGEPYFMEYMQYEYNTRAQESEVCVVSAC  112 (138)
Q Consensus        77 g~hYvDisge~~~~~~~~~~~~~~A~~~gv~iv~~~  112 (138)
                      |+.||=+.......    ..+.+.|++.|+++...-
T Consensus       104 Ga~~v~~~~~~~~~----~~l~~~a~~~gv~l~~En  135 (262)
T 3p6l_A          104 DLEFITCEPALSDW----DLVEKLSKQYNIKISVHN  135 (262)
T ss_dssp             TCSEEEECCCGGGH----HHHHHHHHHHTCEEEEEC
T ss_pred             CCCEEEecCCHHHH----HHHHHHHHHhCCEEEEEe
Confidence            99998875332222    355678889999887653

>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}

Probab=81.99  E-value=0.86  Score=35.48  Aligned_cols=62  Identities=16%  Similarity=0.247  Sum_probs=41.5

Q ss_pred             HHHHHHhcCcEEEecCCCccchhHHHHHHHHHcCCCeeeCCCChHHHHHHHHHhHHHHHhCCCEEEeCCC
Q psy12849         44 SILIMAKKCRVILNCVGPYTWYGEAVVKACIEAKTHHVDITGEPYFMEYMQYEYNTRAQESEVCVVSACG  113 (138)
Q Consensus        44 ~L~~~~~~~dvVIn~~GPf~~~~~~v~~Aci~~g~hYvDisge~~~~~~~~~~~~~~A~~~gv~iv~~~G  113 (138)
                      ++.++++++|+|++++++ ...+...+ ..++.|...||++-.+.-+     .+ +.+++.|+.++---|
T Consensus       208 ~l~~~l~~aDvVi~~~p~-~~i~~~~~-~~mk~g~~lin~a~g~~~~-----~~-~~a~~~G~~~i~~pg  269 (300)
T 2rir_A          208 ELKEHVKDIDICINTIPS-MILNQTVL-SSMTPKTLILDLASRPGGT-----DF-KYAEKQGIKALLAPG  269 (300)
T ss_dssp             GHHHHSTTCSEEEECCSS-CCBCHHHH-TTSCTTCEEEECSSTTCSB-----CH-HHHHHHTCEEEECCC
T ss_pred             hHHHHhhCCCEEEECCCh-hhhCHHHH-HhCCCCCEEEEEeCCCCCc-----CH-HHHHHCCCEEEECCC
Confidence            577788999999999955 44544433 4567899999997543222     12 346677998774444

>4e38_A Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho aldolase; lyase; 1.64A {Vibrionales bacterium swat-3}

Probab=81.75  E-value=2.8  Score=32.21  Aligned_cols=90  Identities=12%  Similarity=0.094  Sum_probs=57.0

Q ss_pred             HhhhhcCCCCcceEEeeCCCHH---HHHHHHhcC-cEEEecCCCccchhHHHHHHHHHcCCCeeeCCCChHHHHHHHHHh
Q psy12849         22 QKASWFGVRTNRTTVVNTINES---SILIMAKKC-RVILNCVGPYTWYGEAVVKACIEAKTHHVDITGEPYFMEYMQYEY   97 (138)
Q Consensus        22 ~~a~~~~~~~~~~~~~D~~d~~---~L~~~~~~~-dvVIn~~GPf~~~~~~v~~Aci~~g~hYvDisge~~~~~~~~~~~   97 (138)
                      ++++.+-...+.++++...++.   .++++-+.. +++|- +|-..  ...-++.|+++|+.+|=.-+.   ..++.   
T Consensus        50 ~~a~al~~gGi~~iEvt~~t~~a~e~I~~l~~~~~~~~iG-aGTVl--t~~~a~~Ai~AGA~fIvsP~~---~~~vi---  120 (232)
T 4e38_A           50 PLGKVLAENGLPAAEITFRSDAAVEAIRLLRQAQPEMLIG-AGTIL--NGEQALAAKEAGATFVVSPGF---NPNTV---  120 (232)
T ss_dssp             HHHHHHHHTTCCEEEEETTSTTHHHHHHHHHHHCTTCEEE-EECCC--SHHHHHHHHHHTCSEEECSSC---CHHHH---
T ss_pred             HHHHHHHHCCCCEEEEeCCCCCHHHHHHHHHHhCCCCEEe-ECCcC--CHHHHHHHHHcCCCEEEeCCC---CHHHH---
Confidence            3444443357788888877665   344444443 55554 34322  256699999999999955432   22222   


Q ss_pred             HHHHHhCCCEEEeCCCCccchHhHHHH
Q psy12849         98 NTRAQESEVCVVSACGIETLPIDMGVL  124 (138)
Q Consensus        98 ~~~A~~~gv~iv~~~G~d~~p~dl~~~  124 (138)
                       +.+++.|+.++|||.   .|+++...
T Consensus       121 -~~~~~~gi~~ipGv~---TptEi~~A  143 (232)
T 4e38_A          121 -RACQEIGIDIVPGVN---NPSTVEAA  143 (232)
T ss_dssp             -HHHHHHTCEEECEEC---SHHHHHHH
T ss_pred             -HHHHHcCCCEEcCCC---CHHHHHHH
Confidence             346778999999987   78877654

>3h5n_A MCCB protein; ubiquitin-activating enzyme, microcin, protein structure, MCCC7, peptide antibiotics, N-P bond formation, transferase; HET: ATP; 1.90A {Escherichia coli} PDB: 3h5r_A 3h9g_A 3h9j_A* 3h9q_A 3h5a_A

Probab=81.73  E-value=1.9  Score=34.83  Aligned_cols=51  Identities=10%  Similarity=0.057  Sum_probs=36.6

Q ss_pred             CcceEEeeCCCHHHHHHHHhcCcEEEecCCCccchhHHHHHHHHHcCCCeee
Q psy12849         31 TNRTTVVNTINESSILIMAKKCRVILNCVGPYTWYGEAVVKACIEAKTHHVD   82 (138)
Q Consensus        31 ~~~~~~~D~~d~~~L~~~~~~~dvVIn~~GPf~~~~~~v~~Aci~~g~hYvD   82 (138)
                      +++....+++....+.. ++++|+||+|..-+...-..+-++|.+.|+++|.
T Consensus       189 ~v~~~~~~i~~~~~~~~-~~~~DlVvd~~Dn~~~~r~~ln~~c~~~~~p~i~  239 (353)
T 3h5n_A          189 SVSEIALNINDYTDLHK-VPEADIWVVSADHPFNLINWVNKYCVRANQPYIN  239 (353)
T ss_dssp             EEEEEECCCCSGGGGGG-SCCCSEEEECCCCSTTHHHHHHHHHHHTTCCEEE
T ss_pred             eEEEeecccCchhhhhH-hccCCEEEEecCChHHHHHHHHHHHHHhCCCEEE
Confidence            34445555555444666 8999999999976652334677999999999987

>3dx5_A Uncharacterized protein ASBF; beta-alpha barrel, petrobactin synthesis, ASB locus, structu genomics, PSI-2, protein structure initiative; HET: MSE DHB TRS; 2.12A {Bacillus anthracis}

Probab=81.71  E-value=3  Score=31.22  Aligned_cols=96  Identities=11%  Similarity=-0.094  Sum_probs=63.1

Q ss_pred             HHHHHHhhhhcCCCCcceEEe--------eCCCHHHHHHHHhcCcEEEecCCCccc------------hhHHHHHHHHHc
Q psy12849         17 IFLFLQKASWFGVRTNRTTVV--------NTINESSILIMAKKCRVILNCVGPYTW------------YGEAVVKACIEA   76 (138)
Q Consensus        17 ~~~~~~~a~~~~~~~~~~~~~--------D~~d~~~L~~~~~~~dvVIn~~GPf~~------------~~~~v~~Aci~~   76 (138)
                      +-..++.+.+.|.+.+++...        +-.+.+++.+.+++..+-+.+.+||..            .-.+.++.|.+.
T Consensus        17 ~~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~A~~l   96 (286)
T 3dx5_A           17 FTDIVQFAYENGFEGIELWGTHAQNLYMQEYETTERELNCLKDKTLEITMISDYLDISLSADFEKTIEKCEQLAILANWF   96 (286)
T ss_dssp             HHHHHHHHHHTTCCEEEEEHHHHHHHHHHCHHHHHHHHHHTGGGTCCEEEEECCCCCSTTSCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCEEEEcccccccccccCHHHHHHHHHHHHHcCCeEEEEecCCCCCCchhHHHHHHHHHHHHHHHHHh
Confidence            344677788888776665321        113556788899998888888877752            113588899999


Q ss_pred             CCCeeeC-CCChH----------HHHHHHHHhHHHHHhCCCEEEeCC
Q psy12849         77 KTHHVDI-TGEPY----------FMEYMQYEYNTRAQESEVCVVSAC  112 (138)
Q Consensus        77 g~hYvDi-sge~~----------~~~~~~~~~~~~A~~~gv~iv~~~  112 (138)
                      |+.+|=+ +|..+          .+.+...++-+.|++.|+++...-
T Consensus        97 G~~~v~~~~g~~~~~~~~~~~~~~~~~~l~~l~~~a~~~Gv~l~lE~  143 (286)
T 3dx5_A           97 KTNKIRTFAGQKGSADFSQQERQEYVNRIRMICELFAQHNMYVLLET  143 (286)
T ss_dssp             TCCEEEECSCSSCGGGSCHHHHHHHHHHHHHHHHHHHHTTCEEEEEC
T ss_pred             CCCEEEEcCCCCCcccCcHHHHHHHHHHHHHHHHHHHHhCCEEEEec
Confidence            9999954 44321          112223466677888999987654

>1k77_A EC1530, hypothetical protein YGBM; TIM barrel, structural genomics, PSI, structure initiative; 1.63A {Escherichia coli} SCOP: c.1.15.5

Probab=81.68  E-value=7.1  Score=28.61  Aligned_cols=93  Identities=8%  Similarity=-0.072  Sum_probs=58.3

Q ss_pred             HHHhhhhcCCCCcceEEeeCCCHHHHHHHHhcCcEEEecCC-Cccc--------------------hhHHHHHHHHHcCC
Q psy12849         20 FLQKASWFGVRTNRTTVVNTINESSILIMAKKCRVILNCVG-PYTW--------------------YGEAVVKACIEAKT   78 (138)
Q Consensus        20 ~~~~a~~~~~~~~~~~~~D~~d~~~L~~~~~~~dvVIn~~G-Pf~~--------------------~~~~v~~Aci~~g~   78 (138)
                      .++.+++.|.+.+++....-.+.+++.+.+++..+-+.+.. |+..                    .-.+.++.|.+.|+
T Consensus        20 ~l~~~~~~G~~~vEl~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~a~~lG~   99 (260)
T 1k77_A           20 RFAAARKAGFDAVEFLFPYNYSTLQIQKQLEQNHLTLALFNTAPGDINAGEWGLSALPGREHEAHADIDLALEYALALNC   99 (260)
T ss_dssp             HHHHHHHHTCSEEECSCCTTSCHHHHHHHHHHTTCEEEEEECCCCCGGGTCSCSTTCTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHhCCCEEEecCCCCCCHHHHHHHHHHcCCceEEEecCCcccccccCCCCCChhHHHHHHHHHHHHHHHHHHcCC
Confidence            45566666665554433333467899999999877666432 3210                    12477888999999


Q ss_pred             CeeeC-CCChH----------HHHHHHHHhHHHHHhCCCEEEeCC
Q psy12849         79 HHVDI-TGEPY----------FMEYMQYEYNTRAQESEVCVVSAC  112 (138)
Q Consensus        79 hYvDi-sge~~----------~~~~~~~~~~~~A~~~gv~iv~~~  112 (138)
                      .+|=+ +|..+          ...+...++.+.|++.|+++...-
T Consensus       100 ~~v~~~~g~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~l~~E~  144 (260)
T 1k77_A          100 EQVHVMAGVVPAGEDAERYRAVFIDNIRYAADRFAPHGKRILVEA  144 (260)
T ss_dssp             SEEECCCCBCCTTSCHHHHHHHHHHHHHHHHHHHGGGTCEEEECC
T ss_pred             CEEEECcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCEEEEEe
Confidence            99976 34311          112223356677888999998753

>1uzm_A 3-oxoacyl-[acyl-carrier protein] reductase; beta-ketoacyl reductase, oxidoreductase; 1.49A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1uzn_A* 2ntn_A 1uzl_A

Probab=81.62  E-value=1.2  Score=33.18  Aligned_cols=29  Identities=10%  Similarity=0.108  Sum_probs=25.1

Q ss_pred             eEEeeCCCHHHHHHHHh-------cCcEEEecCCCc
Q psy12849         34 TTVVNTINESSILIMAK-------KCRVILNCVGPY   62 (138)
Q Consensus        34 ~~~~D~~d~~~L~~~~~-------~~dvVIn~~GPf   62 (138)
                      .+.+|+.|++++.++++       +.|++||++|..
T Consensus        57 ~~~~D~~~~~~~~~~~~~~~~~~g~id~lv~~Ag~~   92 (247)
T 1uzm_A           57 GVEVDVTDSDAVDRAFTAVEEHQGPVEVLVSNAGLS   92 (247)
T ss_dssp             EEECCTTCHHHHHHHHHHHHHHHSSCSEEEEECSCC
T ss_pred             CeeccCCCHHHHHHHHHHHHHHcCCCCEEEECCCCC
Confidence            47899999999998887       469999999954

>2fp4_A Succinyl-COA ligase [GDP-forming] alpha-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.2.1.8 c.23.4.1 PDB: 2fpg_A* 2fpi_A* 2fpp_A* 1euc_A* 1eud_A*

Probab=81.55  E-value=3.9  Score=32.33  Aligned_cols=65  Identities=17%  Similarity=0.209  Sum_probs=45.9

Q ss_pred             HHHHHHh--cCcEEEecCCCccchhHHHHHHHHHcCCCe-eeCCCChHHHHHHHHHhHHHHHhC-CCEEE-eCC
Q psy12849         44 SILIMAK--KCRVILNCVGPYTWYGEAVVKACIEAKTHH-VDITGEPYFMEYMQYEYNTRAQES-EVCVV-SAC  112 (138)
Q Consensus        44 ~L~~~~~--~~dvVIn~~GPf~~~~~~v~~Aci~~g~hY-vDisge~~~~~~~~~~~~~~A~~~-gv~iv-~~~  112 (138)
                      ++.++.+  ..|+++-++ |.. ....+++.|++.|++. +=++.-.+. ++. .++-+.|+++ |+.++ |.|
T Consensus        62 sl~el~~~~~vD~avI~v-P~~-~~~~~~~e~i~~Gi~~iv~~t~G~~~-~~~-~~l~~~a~~~~gi~liGPnc  131 (305)
T 2fp4_A           62 TVKEAKEQTGATASVIYV-PPP-FAAAAINEAIDAEVPLVVCITEGIPQ-QDM-VRVKHRLLRQGKTRLIGPNC  131 (305)
T ss_dssp             SHHHHHHHHCCCEEEECC-CHH-HHHHHHHHHHHTTCSEEEECCCCCCH-HHH-HHHHHHHTTCSSCEEECSSS
T ss_pred             hHHHhhhcCCCCEEEEec-CHH-HHHHHHHHHHHCCCCEEEEECCCCCh-HHH-HHHHHHHHhcCCcEEEeCCC
Confidence            4666667  899999999 544 3468999999999998 455543222 111 2556788999 99988 555

>3m2t_A Probable dehydrogenase; PSI, SGXNY, structural genomics, protein structure initiative; HET: NAD; 2.30A {Chromobacterium violaceum}

Probab=81.54  E-value=3.4  Score=32.77  Aligned_cols=70  Identities=9%  Similarity=-0.067  Sum_probs=46.3

Q ss_pred             HHHHHhc--CcEEEecCCCccchhHHHHHHHHHcCCCeee---CCCChHHHHHHHHHhHHHHHhCCCEEEeCCCCccchH
Q psy12849         45 ILIMAKK--CRVILNCVGPYTWYGEAVVKACIEAKTHHVD---ITGEPYFMEYMQYEYNTRAQESEVCVVSACGIETLPI  119 (138)
Q Consensus        45 L~~~~~~--~dvVIn~~GPf~~~~~~v~~Aci~~g~hYvD---isge~~~~~~~~~~~~~~A~~~gv~iv~~~G~d~~p~  119 (138)
                      +.++++.  .|+|+-|. |-..+ .++++.|+++|.|.+=   ++-...-.+    ++-+.|+++|+.+..+.-+-..|.
T Consensus        60 ~~~ll~~~~vD~V~i~t-p~~~H-~~~~~~al~aGkhVl~EKPla~~~~e~~----~l~~~a~~~g~~~~v~~~~R~~p~  133 (359)
T 3m2t_A           60 VPAMLNQVPLDAVVMAG-PPQLH-FEMGLLAMSKGVNVFVEKPPCATLEELE----TLIDAARRSDVVSGVGMNFKFARP  133 (359)
T ss_dssp             HHHHHHHSCCSEEEECS-CHHHH-HHHHHHHHHTTCEEEECSCSCSSHHHHH----HHHHHHHHHTCCEEECCHHHHCHH
T ss_pred             HHHHhcCCCCCEEEEcC-CcHHH-HHHHHHHHHCCCeEEEECCCcCCHHHHH----HHHHHHHHcCCEEEEEecccCcHH
Confidence            5566664  59999999 55555 4788999999999763   333433333    344678888998866654434444


Q ss_pred             h
Q psy12849        120 D  120 (138)
Q Consensus       120 d  120 (138)
                      -
T Consensus       134 ~  134 (359)
T 3m2t_A          134 V  134 (359)
T ss_dssp             H
T ss_pred             H
Confidence            3

>2qhx_A Pteridine reductase 1; oxidoreductase, short-chain dehydrogenase/reductase, trypanosomatid, pterin salvage, drug resistance; HET: NAP FE1; 2.61A {Leishmania major} SCOP: c.2.1.2

Probab=81.47  E-value=0.87  Score=35.84  Aligned_cols=33  Identities=15%  Similarity=0.300  Sum_probs=28.2

Q ss_pred             CCcceEEeeCCCHH-----------------HHHHHHh-------cCcEEEecCCCc
Q psy12849         30 RTNRTTVVNTINES-----------------SILIMAK-------KCRVILNCVGPY   62 (138)
Q Consensus        30 ~~~~~~~~D~~d~~-----------------~L~~~~~-------~~dvVIn~~GPf   62 (138)
                      .++.++.+|+.|++                 ++.++++       +.|++||++|-.
T Consensus        97 ~~~~~~~~Dl~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~iD~lVnnAG~~  153 (328)
T 2qhx_A           97 NSAITVQADLSNVATAPVSGADGSAPVTLFTRCAELVAACYTHWGRCDVLVNNASSF  153 (328)
T ss_dssp             TCEEEEECCCSSSCBCC-------CCBCHHHHHHHHHHHHHHHHSCCCEEEECCCCC
T ss_pred             CeEEEEEeeCCCchhccccccccccccccHHHHHHHHHHHHHhcCCCCEEEECCCCC
Confidence            46788999999998                 8888887       679999999853

>3vni_A Xylose isomerase domain protein TIM barrel; D-psicose 3-epimerase, ketohexose; 1.98A {Clostridium cellulolyticum} PDB: 3vnj_A* 3vnl_A* 3vnk_A* 3vnm_A*

Probab=81.34  E-value=6.9  Score=29.31  Aligned_cols=94  Identities=15%  Similarity=0.090  Sum_probs=57.9

Q ss_pred             HHHHHhhhhcCCCCcceEEe-----eCCCHHHHHHHHhcCcEEEec-CCCccc--h--------------hHHHHHHHHH
Q psy12849         18 FLFLQKASWFGVRTNRTTVV-----NTINESSILIMAKKCRVILNC-VGPYTW--Y--------------GEAVVKACIE   75 (138)
Q Consensus        18 ~~~~~~a~~~~~~~~~~~~~-----D~~d~~~L~~~~~~~dvVIn~-~GPf~~--~--------------~~~v~~Aci~   75 (138)
                      -..++.+.+.|.+.+++..-     +-.+.+++.+.+++..+-+.+ .+|+..  .              -.+.++.|.+
T Consensus        20 ~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~l~~~gl~i~~~~~~~~~~~l~~~d~~~r~~~~~~~~~~i~~a~~   99 (294)
T 3vni_A           20 KYYIEKVAKLGFDILEIAASPLPFYSDIQINELKACAHGNGITLTVGHGPSAEQNLSSPDPDIRKNAKAFYTDLLKRLYK   99 (294)
T ss_dssp             HHHHHHHHHHTCSEEEEESTTGGGCCHHHHHHHHHHHHHTTCEEEEEECCCGGGCTTCSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCEEEecCcccCCcCHHHHHHHHHHHHHcCCeEEEeecCCCCcCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            44567777777766665521     122457788889988887776 555321  1              1247888999


Q ss_pred             cCCCeee--C--------CCCh---HHHH---HHHHHhHHHHHhCCCEEEeC
Q psy12849         76 AKTHHVD--I--------TGEP---YFME---YMQYEYNTRAQESEVCVVSA  111 (138)
Q Consensus        76 ~g~hYvD--i--------sge~---~~~~---~~~~~~~~~A~~~gv~iv~~  111 (138)
                      .|+.+|=  +        .+..   ...+   +...++-+.|++.|+++...
T Consensus       100 lG~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~Gv~l~lE  151 (294)
T 3vni_A          100 LDVHLIGGALYSYWPIDYTKTIDKKGDWERSVESVREVAKVAEACGVDFCLE  151 (294)
T ss_dssp             HTCCEEEESTTSCSSCCTTSCCCHHHHHHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred             hCCCeeeccccCCCCCcCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCEEEEE
Confidence            9999994  2        1111   1122   22235566788899998766

>1ooe_A Dihydropteridine reductase; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics; HET: MES; 1.65A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=81.33  E-value=0.53  Score=34.75  Aligned_cols=30  Identities=10%  Similarity=-0.059  Sum_probs=25.6

Q ss_pred             cceEEeeCCCHHHHHHHHh---------cCcEEEecCCC
Q psy12849         32 NRTTVVNTINESSILIMAK---------KCRVILNCVGP   61 (138)
Q Consensus        32 ~~~~~~D~~d~~~L~~~~~---------~~dvVIn~~GP   61 (138)
                      ..++.+|+.|++++.++++         +.|++||++|.
T Consensus        44 ~~~~~~D~~~~~~~~~~~~~~~~~~~~g~id~lv~~Ag~   82 (236)
T 1ooe_A           44 NILVDGNKNWTEQEQSILEQTASSLQGSQVDGVFCVAGG   82 (236)
T ss_dssp             EEECCTTSCHHHHHHHHHHHHHHHHTTCCEEEEEECCCC
T ss_pred             cEEEeCCCCCHHHHHHHHHHHHHHhCCCCCCEEEECCcc
Confidence            4567889999999988887         67999999994

>4gkb_A 3-oxoacyl-[acyl-carrier protein] reductase; putative sugar dehydrogenase, enzyme function initiative, EF structural genomics; 1.50A {Burkholderia multivorans} PDB: 4glo_A*

Probab=81.09  E-value=1.7  Score=33.50  Aligned_cols=33  Identities=9%  Similarity=-0.006  Sum_probs=28.0

Q ss_pred             CCcceEEeeCCCHHHHHHHHhc-------CcEEEecCCCc
Q psy12849         30 RTNRTTVVNTINESSILIMAKK-------CRVILNCVGPY   62 (138)
Q Consensus        30 ~~~~~~~~D~~d~~~L~~~~~~-------~dvVIn~~GPf   62 (138)
                      .+..++++|++|++++.+++++       .|++||++|-+
T Consensus        55 ~~~~~~~~Dv~~~~~v~~~v~~~~~~~G~iDiLVNnAGi~   94 (258)
T 4gkb_A           55 PRATYLPVELQDDAQCRDAVAQTIATFGRLDGLVNNAGVN   94 (258)
T ss_dssp             TTCEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEECCCCC
T ss_pred             CCEEEEEeecCCHHHHHHHHHHHHHHhCCCCEEEECCCCC
Confidence            4678899999999998888774       69999999953

>3l23_A Sugar phosphate isomerase/epimerase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.70A {Parabacteroides distasonis}

Probab=80.92  E-value=6.5  Score=30.18  Aligned_cols=93  Identities=8%  Similarity=-0.103  Sum_probs=58.7

Q ss_pred             HHHHHhhhhcCCCCcceEE-----eeCCCHHHHHHHHhcCcEEEecCC-Ccc------------------------chhH
Q psy12849         18 FLFLQKASWFGVRTNRTTV-----VNTINESSILIMAKKCRVILNCVG-PYT------------------------WYGE   67 (138)
Q Consensus        18 ~~~~~~a~~~~~~~~~~~~-----~D~~d~~~L~~~~~~~dvVIn~~G-Pf~------------------------~~~~   67 (138)
                      -..++++++.|.+.+++..     ..-.+.+++.+.+++..+-+.+.. |+.                        ..-.
T Consensus        32 ~~~l~~~a~~G~~~VEl~~~~~~~~~~~~~~~~~~~l~~~GL~v~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~  111 (303)
T 3l23_A           32 AANLRKVKDMGYSKLELAGYGKGAIGGVPMMDFKKMAEDAGLKIISSHVNPVDTSISDPFKAMIFKYSKEVTPKIMEYWK  111 (303)
T ss_dssp             HHHHHHHHHTTCCEEEECCEETTEETTEEHHHHHHHHHHTTCEEEEEECCCBCTTCSSTTTTBCCSCCTTTHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCEEEeccccCcccCCCCHHHHHHHHHHcCCeEEEEecccccccccCcccccccccchhhHHHHHHHHH
Confidence            4567778888876666554     222368899999998876654432 331                        0124


Q ss_pred             HHHHHHHHcCCCeeeCCCC-----h-HH--HHHHHHHhHHHHHhCCCE--EEe
Q psy12849         68 AVVKACIEAKTHHVDITGE-----P-YF--MEYMQYEYNTRAQESEVC--VVS  110 (138)
Q Consensus        68 ~v~~Aci~~g~hYvDisge-----~-~~--~~~~~~~~~~~A~~~gv~--iv~  110 (138)
                      +.++.|.+.|+.||=+.+-     . .|  ..+...+..+.|++.|++  +..
T Consensus       112 ~~i~~A~~lG~~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~Gv~~~l~~  164 (303)
T 3l23_A          112 ATAADHAKLGCKYLIQPMMPTITTHDEAKLVCDIFNQASDVIKAEGIATGFGY  164 (303)
T ss_dssp             HHHHHHHHTTCSEEEECSCCCCCSHHHHHHHHHHHHHHHHHHHHTTCTTCEEE
T ss_pred             HHHHHHHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCcceEEE
Confidence            6788899999999976432     1 12  112223556678889998  764

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=80.81  E-value=11  Score=25.50  Aligned_cols=87  Identities=9%  Similarity=0.013  Sum_probs=54.5

Q ss_pred             CcceEEeeCCCHHHHHHH-HhcCcEEEecCCCccchhHHHHHHHHHc--CCCeeeCCCChHHHHHHHHHhHHHHHhCCCE
Q psy12849         31 TNRTTVVNTINESSILIM-AKKCRVILNCVGPYTWYGEAVVKACIEA--KTHHVDITGEPYFMEYMQYEYNTRAQESEVC  107 (138)
Q Consensus        31 ~~~~~~~D~~d~~~L~~~-~~~~dvVIn~~GPf~~~~~~v~~Aci~~--g~hYvDisge~~~~~~~~~~~~~~A~~~gv~  107 (138)
                      ...++..|..+++.|.+. ++++|+||.|.+. ......++..+.+.  +.+-+-...++...        +..++.|+.
T Consensus        50 g~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~~-~~~n~~~~~~a~~~~~~~~iiar~~~~~~~--------~~l~~~G~d  120 (140)
T 3fwz_A           50 GVRAVLGNAANEEIMQLAHLECAKWLILTIPN-GYEAGEIVASARAKNPDIEIIARAHYDDEV--------AYITERGAN  120 (140)
T ss_dssp             TCEEEESCTTSHHHHHHTTGGGCSEEEECCSC-HHHHHHHHHHHHHHCSSSEEEEEESSHHHH--------HHHHHTTCS
T ss_pred             CCCEEECCCCCHHHHHhcCcccCCEEEEECCC-hHHHHHHHHHHHHHCCCCeEEEEECCHHHH--------HHHHHCCCC
Confidence            567788899999988875 7889999999954 33333455555443  34444444443332        333456665


Q ss_pred             EEeCCCCccchHhHHHHHHHHHhhh
Q psy12849        108 VVSACGIETLPIDMGVLMLQDSFEG  132 (138)
Q Consensus       108 iv~~~G~d~~p~dl~~~~~~~~~~~  132 (138)
                      .+.      .|....+..+.+.+..
T Consensus       121 ~vi------~p~~~~a~~i~~~l~~  139 (140)
T 3fwz_A          121 QVV------MGEREIARTMLELLET  139 (140)
T ss_dssp             EEE------EHHHHHHHHHHHHHHC
T ss_pred             EEE------CchHHHHHHHHHHhhC
Confidence            443      5777777777766643

>3ged_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3geg_A*

Probab=80.78  E-value=1.6  Score=33.53  Aligned_cols=33  Identities=6%  Similarity=-0.073  Sum_probs=27.8

Q ss_pred             CCcceEEeeCCCHHHHHHHHh-------cCcEEEecCCCc
Q psy12849         30 RTNRTTVVNTINESSILIMAK-------KCRVILNCVGPY   62 (138)
Q Consensus        30 ~~~~~~~~D~~d~~~L~~~~~-------~~dvVIn~~GPf   62 (138)
                      .+..++++|+.|++++.++++       +.|++||++|-+
T Consensus        47 ~~~~~~~~Dv~~~~~v~~~v~~~~~~~g~iDiLVNNAG~~   86 (247)
T 3ged_A           47 PNLFYFHGDVADPLTLKKFVEYAMEKLQRIDVLVNNACRG   86 (247)
T ss_dssp             TTEEEEECCTTSHHHHHHHHHHHHHHHSCCCEEEECCCCC
T ss_pred             CCEEEEEecCCCHHHHHHHHHHHHHHcCCCCEEEECCCCC
Confidence            467889999999999988876       469999999743

>3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida}

Probab=80.62  E-value=2.8  Score=32.58  Aligned_cols=63  Identities=11%  Similarity=-0.048  Sum_probs=39.6

Q ss_pred             HHHHHhcCcEEEecCCCccchhHHHHH----HHHHcCCCeeeCCCChHHHHHHHHHhHHHHHhCCCEEEeC
Q psy12849         45 ILIMAKKCRVILNCVGPYTWYGEAVVK----ACIEAKTHHVDITGEPYFMEYMQYEYNTRAQESEVCVVSA  111 (138)
Q Consensus        45 L~~~~~~~dvVIn~~GPf~~~~~~v~~----Aci~~g~hYvDisge~~~~~~~~~~~~~~A~~~gv~iv~~  111 (138)
                      +.++++++|+||-|+ |....-+.++.    ..+..|..+||++.-.+-...   ++.+..++.|+.++.+
T Consensus        59 ~~e~~~~aDvVi~~v-p~~~~~~~v~~~~~l~~~~~g~ivid~st~~~~~~~---~l~~~~~~~g~~~vda  125 (306)
T 3l6d_A           59 VKAALSASPATIFVL-LDNHATHEVLGMPGVARALAHRTIVDYTTNAQDEGL---ALQGLVNQAGGHYVKG  125 (306)
T ss_dssp             HHHHHHHSSEEEECC-SSHHHHHHHHTSTTHHHHTTTCEEEECCCCCTTHHH---HHHHHHHHTTCEEEEE
T ss_pred             HHHHHhcCCEEEEEe-CCHHHHHHHhcccchhhccCCCEEEECCCCCHHHHH---HHHHHHHHcCCeEEec
Confidence            556778899999999 53322233332    234679999999776554321   3335566778877653

>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp}

Probab=80.24  E-value=1.3  Score=34.30  Aligned_cols=33  Identities=15%  Similarity=0.179  Sum_probs=27.8

Q ss_pred             CCcceEEeeCCCHHHHHHHHhc-------CcEEEecCCCc
Q psy12849         30 RTNRTTVVNTINESSILIMAKK-------CRVILNCVGPY   62 (138)
Q Consensus        30 ~~~~~~~~D~~d~~~L~~~~~~-------~dvVIn~~GPf   62 (138)
                      .+...+++|++|++++.++++.       .|++||++|-.
T Consensus        58 ~~~~~~~~Dv~~~~~v~~~~~~~~~~~G~iDiLVNNAG~~   97 (255)
T 4g81_D           58 YDAHGVAFDVTDELAIEAAFSKLDAEGIHVDILINNAGIQ   97 (255)
T ss_dssp             CCEEECCCCTTCHHHHHHHHHHHHHTTCCCCEEEECCCCC
T ss_pred             CcEEEEEeeCCCHHHHHHHHHHHHHHCCCCcEEEECCCCC
Confidence            4678889999999999888874       59999999843

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	138
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	98.08
d1f06a1	170	Diaminopimelic acid dehydrogenase (DAPDH) {Coryneb	97.97
d1j5pa4	132	Hypothetical protein TM1643 {Thermotoga maritima [	97.5
d1hdoa_	205	Biliverdin IX beta reductase {Human (Homo sapiens)	96.72
d1vi2a1	182	Putative shikimate dehydrogenase YdiB {Escherichia	95.06
d1orra_	338	CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId:	93.62
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	93.39
d1yl7a1	135	Dihydrodipicolinate reductase {Mycobacterium tuber	92.35
d1z45a2	347	Uridine diphosphogalactose-4-epimerase (UDP-galact	92.21
d1db3a_	357	GDP-mannose 4,6-dehydratase {Escherichia coli [Tax	91.93
d1gr0a1	243	Myo-inositol 1-phosphate synthase {Mycobacterium t	91.39
d2czca2	172	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	90.52
d1udca_	338	Uridine diphosphogalactose-4-epimerase (UDP-galact	90.45
d1xg5a_	257	Putative dehydrogenase ARPG836 (MGC4172) {Human (H	90.38
d2bkaa1	232	TAT-interacting protein TIP30 {Human (Homo sapiens	90.37
d2q46a1	252	Hypothetical protein At5g02240 (T7H20_290) {Thale	90.25
d2blla1	342	Polymyxin resistance protein ArnA (PrmI) {Escheric	89.91
d1vjpa1	275	Hypothetical protein TM1419 {Thermotoga maritima [	89.75
d1npya1	167	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	89.66
d1zk4a1	251	R-specific alcohol dehydrogenase {Lactobacillus br	89.1
d1yo6a1	250	Putative carbonyl reductase sniffer {Caenorhabditi	88.96
d1qyca_	307	Phenylcoumaran benzylic ether reductase {Loblolly	88.5
d2q02a1	271	Putative cytoplasmic protein STM4435 {Salmonella t	88.2
d2c5aa1	363	GDP-mannose-3', 5'-epimerase {Thale cress (Arabido	88.01
d2bgka1	268	Rhizome secoisolariciresinol dehydrogenase {Mayapp	87.81
d1tlta1	164	Virulence factor MviM {Escherichia coli [TaxId: 56	87.37
d1gy8a_	383	Uridine diphosphogalactose-4-epimerase (UDP-galact	87.3
d1qyda_	312	Pinoresinol-lariciresinol reductase {Giant arborvi	86.97
d2ew8a1	247	(s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb	86.9
d1oc2a_	346	dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus	86.89
d1cyda_	242	Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1	86.37
d1ygya2	130	Phosphoglycerate dehydrogenase {Mycobacterium tube	86.31
d1n2sa_	298	dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {S	85.82
d2rhca1	257	beta-keto acyl carrier protein reductase {Streptom	85.65
d1nffa_	244	Putative oxidoreductase Rv2002 {Mycobacterium tube	85.42
d1iy8a_	258	Levodione reductase {Corynebacterium aquaticum [Ta	85.13
d1pr9a_	244	Carbonyl reductase {Human (Homo sapiens) [TaxId: 9	85.1
d1i24a_	393	Sulfolipid biosynthesis protein SQD1 {Thale cress	85.02
d1vl8a_	251	Gluconate 5-dehydrogenase {Thermotoga maritima [Ta	84.73
d1ulsa_	242	beta-keto acyl carrier protein reductase {Thermus	84.62
d1gqna_	252	Type I 3-dehydroquinate dehydratase {Salmonella ty	84.59
d1gega_	255	meso-2,3-butanediol dehydrogenase {Klebsiella pneu	84.44
d1wmaa1	275	Carbonyl reductase/20beta-hydroxysteroid dehydroge	84.27
d1vm6a3	128	Dihydrodipicolinate reductase {Thermotoga maritima	83.98
d1edoa_	244	beta-keto acyl carrier protein reductase {Oil seed	83.85
d1x1ta1	260	D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas	83.79
d1k2wa_	256	Sorbitol dehydrogenase {Rhodobacter sphaeroides [T	83.57
d1rkxa_	356	CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc	82.77
d1xhla_	274	Hypothetical protein F25D1.5 {Caenorhabditis elega	82.74
d2bd0a1	240	Bacterial sepiapterin reductase {Chlorobium tepidu	82.36
d1zema1	260	Xylitol dehydrogenase {Gluconobacter oxydans [TaxI	82.26
d1ydwa1	184	Probable oxidoreductase At4g09670 {Thale cress (Ar	82.23
d2gdza1	254	15-hydroxyprostaglandin dehydrogenase, PGDH {Human	82.07
d1ydea1	250	Retinal dehydrogenase/reductase 3 {Human (Homo sap	82.03
d1xkqa_	272	Hypothetical protein R05D8.7 {Caenorhabditis elega	81.31
d1geea_	261	Glucose dehydrogenase {Bacillus megaterium [TaxId:	81.29
d1q7ba_	243	beta-keto acyl carrier protein reductase {Escheric	81.07
d1kewa_	361	dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus	81.06
d1fmca_	255	7-alpha-hydroxysteroid dehydrogenase {Escherichia	81.0
d1h5qa_	260	Mannitol dehydrogenase {Mushroom (Agaricus bisporu	80.98
d1hdca_	254	3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre	80.94
d1u8xx1	167	Maltose-6'-phosphate glucosidase GlvA {Bacillus su	80.79
d1diha1	162	Dihydrodipicolinate reductase {Escherichia coli [T	80.77
d2c07a1	251	beta-keto acyl carrier protein reductase {Malaria	80.34
d1yb1a_	244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	80.1
d1spxa_	264	Glucose dehydrogenase (5l265) {Nematode (Caenorhab	80.05

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=98.08  E-value=2.3e-05  Score=54.13  Aligned_cols=89  Identities=19%  Similarity=0.334  Sum_probs=73.0

Q ss_pred             CCcceEEeeCCCHHHHHHHHhcCcEEEecCCCccchhHHHHHHHHHcCCCeeeCCCChHHHHHHHHHhHHHHHhCCCEEE
Q psy12849         30 RTNRTTVVNTINESSILIMAKKCRVILNCVGPYTWYGEAVVKACIEAKTHHVDITGEPYFMEYMQYEYNTRAQESEVCVV  109 (138)
Q Consensus        30 ~~~~~~~~D~~d~~~L~~~~~~~dvVIn~~GPf~~~~~~v~~Aci~~g~hYvDisge~~~~~~~~~~~~~~A~~~gv~iv  109 (138)
                      ........+..+...+...+...++++++. |+... ..++..|.+.++||+|++...+.+    ..++++++.++..++
T Consensus        46 ~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~~~~~~  119 (182)
T d1e5qa1          46 QHSTPISLDVNDDAALDAEVAKHDLVISLI-PYTFH-ATVIKSAIRQKKHVVTTSYVSPAM----MELDQAAKDAGITVM  119 (182)
T ss_dssp             TTEEEEECCTTCHHHHHHHHTTSSEEEECS-CGGGH-HHHHHHHHHHTCEEECSSCCCHHH----HHTHHHHHHTTCEEE
T ss_pred             cccccccccccchhhhHhhhhccceeEeec-cchhh-hHHHHHHHhhccceeecccCcHHH----HHHHHHhccccceee
Confidence            344555567778889999999999999988 76644 588999999999999998876654    367789999999999


Q ss_pred             eCCCCccchHhHHHH
Q psy12849        110 SACGIETLPIDMGVL  124 (138)
Q Consensus       110 ~~~G~d~~p~dl~~~  124 (138)
                      ..+|..+.+...+..
T Consensus       120 ~~~~~~~~~~~~~~~  134 (182)
T d1e5qa1         120 NEIGYSAMAKLVGVP  134 (182)
T ss_dssp             CSCBCCHHHHHHHHH
T ss_pred             hhhhcchhhhhhcch
Confidence            999998877776664

>d1f06a1 c.2.1.3 (A:1-118,A:269-320) Diaminopimelic acid dehydrogenase (DAPDH) {Corynebacterium glutamicum [TaxId: 1718]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Diaminopimelic acid dehydrogenase (DAPDH)
species: Corynebacterium glutamicum [TaxId: 1718]

Probab=97.97  E-value=9.3e-06  Score=57.80  Aligned_cols=76  Identities=13%  Similarity=0.028  Sum_probs=57.1

Q ss_pred             HHHHHhcCcEEEecCCCccchhHHHHHHHHHcCCCeeeCCCChHHHHHHHHHhHHHHHhCCCEEEeCCCCccchHhHH
Q psy12849         45 ILIMAKKCRVILNCVGPYTWYGEAVVKACIEAKTHHVDITGEPYFMEYMQYEYNTRAQESEVCVVSACGIETLPIDMG  122 (138)
Q Consensus        45 L~~~~~~~dvVIn~~GPf~~~~~~v~~Aci~~g~hYvDisge~~~~~~~~~~~~~~A~~~gv~iv~~~G~d~~p~dl~  122 (138)
                      +..+..+.|+|+-|.+|.. + .++++.|+++|.|+|+......-..+....+++.|+++|..++.+.||+++...+.
T Consensus        52 ~~~~~~~~D~Vvi~tp~~~-h-~~~a~~aL~aG~~vv~~~~~~~~~~~~~~~l~~~A~~~~~~~~i~~g~~~~~~~~~  127 (170)
T d1f06a1          52 VDKHADDVDVLFLCMGSAT-D-IPEQAPKFAQFACTVDTYDNHRDIPRHRQVMNEAATAAGNVALVSTGRNPDFTASS  127 (170)
T ss_dssp             GGGTTTTCSEEEECSCTTT-H-HHHHHHHHTTTSEEECCCCCGGGHHHHHHHHHHHHHHHTCEEECSCSCHHHHHHHH
T ss_pred             hhhhccccceEEEeCCCcc-c-HHHHHHHHHCCCcEEEecCccccCHHHHHHHHHHHHhcCceEEEeceeccchhHHH
Confidence            4455678999999996654 4 58999999999999976543333333345788899999999999999976655443

>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Biliverdin IX beta reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.72  E-value=0.0015  Score=46.45  Aligned_cols=50  Identities=10%  Similarity=0.094  Sum_probs=41.1

Q ss_pred             CCcceEEeeCCCHHHHHHHHhcCcEEEecCCCccch---------hHHHHHHHHHcCCC
Q psy12849         30 RTNRTTVVNTINESSILIMAKKCRVILNCVGPYTWY---------GEAVVKACIEAKTH   79 (138)
Q Consensus        30 ~~~~~~~~D~~d~~~L~~~~~~~dvVIn~~GPf~~~---------~~~v~~Aci~~g~h   79 (138)
                      ..++++..|+.|++++.+.++++|+||+|+|+....         ...+++++.++|+.
T Consensus        46 ~~~~~~~gD~~d~~~l~~al~~~d~vi~~~g~~~~~~~~~~~~~~~~~l~~aa~~~~v~  104 (205)
T d1hdoa_          46 RPAHVVVGDVLQAADVDKTVAGQDAVIVLLGTRNDLSPTTVMSEGARNIVAAMKAHGVD  104 (205)
T ss_dssp             CCSEEEESCTTSHHHHHHHHTTCSEEEECCCCTTCCSCCCHHHHHHHHHHHHHHHHTCC
T ss_pred             cccccccccccchhhHHHHhcCCCEEEEEeccCCchhhhhhhHHHHHHHHHHHHhcCCC
Confidence            678999999999999999999999999999874321         23678888887763

>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Putative shikimate dehydrogenase YdiB
species: Escherichia coli [TaxId: 562]

Probab=95.06  E-value=0.0081  Score=42.31  Aligned_cols=88  Identities=11%  Similarity=0.071  Sum_probs=59.8

Q ss_pred             cceEEeeCCCHHHHHHHHhcCcEEEecCCCccc--hhHHH--HHHHHHcCCCeeeCCCChHHHHHHHHHhHHHHHhCCCE
Q psy12849         32 NRTTVVNTINESSILIMAKKCRVILNCVGPYTW--YGEAV--VKACIEAKTHHVDITGEPYFMEYMQYEYNTRAQESEVC  107 (138)
Q Consensus        32 ~~~~~~D~~d~~~L~~~~~~~dvVIn~~GPf~~--~~~~v--~~Aci~~g~hYvDisge~~~~~~~~~~~~~~A~~~gv~  107 (138)
                      ......+..+.+.+...+..+|+||||..+-..  ..+.+  -...++.+...+|+...|.-+     .|-..|++.|..
T Consensus        71 ~~~~~~~~~~~~~~~~~~~~~diiIN~Tp~G~~~~~~~~~~~~~~~~~~~~~v~Di~Y~p~~T-----~ll~~a~~~g~~  145 (182)
T d1vi2a1          71 CVVTVTDLADQQAFAEALASADILTNGTKVGMKPLENESLVNDISLLHPGLLVTECVYNPHMT-----KLLQQAQQAGCK  145 (182)
T ss_dssp             CEEEEEETTCHHHHHHHHHTCSEEEECSSTTSTTSCSCCSCCCGGGSCTTCEEEECCCSSSSC-----HHHHHHHTTTCE
T ss_pred             cceEeeecccccchhhhhcccceeccccCCccccccchhhhhHHHhhhcchhhHHhhcCcccc-----HHHHHHHHCcCe
Confidence            446678999999999999999999999832111  11111  124567888999998875543     333568899999


Q ss_pred             EEeCCCCccchHhHHHHHHHHHhh
Q psy12849        108 VVSACGIETLPIDMGVLMLQDSFE  131 (138)
Q Consensus       108 iv~~~G~d~~p~dl~~~~~~~~~~  131 (138)
                      .+.|.+       |+.+-+..+|+
T Consensus       146 ~i~Gl~-------Mli~Qa~~~f~  162 (182)
T d1vi2a1         146 TIDGYG-------MLLWQGAEQFT  162 (182)
T ss_dssp             EECHHH-------HHHHHHHHHHH
T ss_pred             EeccHH-------HHHHHHHHHHH
Confidence            988655       55555555554

>d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-tyvelose-2-epimerase
species: Salmonella typhi [TaxId: 90370]

Probab=93.62  E-value=0.051  Score=39.73  Aligned_cols=50  Identities=8%  Similarity=0.036  Sum_probs=41.2

Q ss_pred             CCcceEEeeCCCHHHHHHHHhcC--cEEEecCCCccchh----------------HHHHHHHHHcCCC
Q psy12849         30 RTNRTTVVNTINESSILIMAKKC--RVILNCVGPYTWYG----------------EAVVKACIEAKTH   79 (138)
Q Consensus        30 ~~~~~~~~D~~d~~~L~~~~~~~--dvVIn~~GPf~~~~----------------~~v~~Aci~~g~h   79 (138)
                      .+++++..|+.|.+++.++++++  |+|++|+++.....                ..++++|.+.++.
T Consensus        49 ~~~~~i~~Di~~~~~l~~~~~~~~~d~Vih~aa~~~~~~~~~~~~~~~~~Nv~gt~nll~~~~~~~~~  116 (338)
T d1orra_          49 GNFEFVHGDIRNKNDVTRLITKYMPDSCFHLAGQVAMTTSIDNPCMDFEINVGGTLNLLEAVRQYNSN  116 (338)
T ss_dssp             CCCEEEECCTTCHHHHHHHHHHHCCSEEEECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred             CCcEEEEcccCCHHHHHHHHHhcCCceEEeecccccccccccChHHHHHHHHHHHHHHHHhhhccccc
Confidence            57899999999999999999986  99999998865332                2567888888775

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=93.39  E-value=0.037  Score=38.84  Aligned_cols=32  Identities=13%  Similarity=0.061  Sum_probs=28.9

Q ss_pred             CCcceEEeeCCCHHHHHHHHhcCcEEEecCCC
Q psy12849         30 RTNRTTVVNTINESSILIMAKKCRVILNCVGP   61 (138)
Q Consensus        30 ~~~~~~~~D~~d~~~L~~~~~~~dvVIn~~GP   61 (138)
                      .++....+|+.|++++.+++.+.|+|||++|+
T Consensus        71 ~~~~~~~~d~~~~~~~~~~~~~iDilin~Ag~  102 (191)
T d1luaa1          71 FKVNVTAAETADDASRAEAVKGAHFVFTAGAI  102 (191)
T ss_dssp             HTCCCEEEECCSHHHHHHHTTTCSEEEECCCT
T ss_pred             cchhhhhhhcccHHHHHHHhcCcCeeeecCcc
Confidence            35678899999999999999999999999985

>d1yl7a1 c.2.1.3 (A:2-105,A:215-245) Dihydrodipicolinate reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=92.35  E-value=0.18  Score=34.07  Aligned_cols=77  Identities=16%  Similarity=0.168  Sum_probs=49.3

Q ss_pred             hcCcEEEecCCCccchhHHHHHHHHHcCCCeeeCCCChHHHHHHHHHhHHH-HHhCCCEEEeCCCCccchHhHHHHHHHH
Q psy12849         50 KKCRVILNCVGPYTWYGEAVVKACIEAKTHHVDITGEPYFMEYMQYEYNTR-AQESEVCVVSACGIETLPIDMGVLMLQD  128 (138)
Q Consensus        50 ~~~dvVIn~~GPf~~~~~~v~~Aci~~g~hYvDisge~~~~~~~~~~~~~~-A~~~gv~iv~~~G~d~~p~dl~~~~~~~  128 (138)
                      .++|+||+..-|-..  ...++.|++.|++.|=  |.+.|..+-+..+.+. ++++++.++.+--|+.+.  -....+.+
T Consensus        43 ~~~DvvIDFS~p~~~--~~~~~~~~~~~~~~Vi--GTTG~~~~~~~~l~~~~~~~~~ipil~apNfSlGv--nll~~l~~  116 (135)
T d1yl7a1          43 GNTEVVIDFTHPDVV--MGNLEFLIDNGIHAVV--GTTGFTAERFQQVESWLVAKPNTSVLIAPNFTSFV--PGVLLAVR  116 (135)
T ss_dssp             TTCSEEEECCCTTTH--HHHHHHHHHTTCEEEE--CCCCCCHHHHHHHHHHHHSCTTCEEEECSCCGGGH--HHHHHHHH
T ss_pred             ccCCEEEEcccHHHH--HHHHHHHHhcCCCEEE--eccccchhHHHHHHHHHHhcCCCCEEEcCCccHHH--HHHHHHHH
Confidence            579999999988655  4689999999999953  4444432212244443 456788888888883333  23334444


Q ss_pred             Hhhh
Q psy12849        129 SFEG  132 (138)
Q Consensus       129 ~~~~  132 (138)
                      ++.+
T Consensus       117 ~aa~  120 (135)
T d1yl7a1         117 RIAE  120 (135)
T ss_dssp             HGGG
T ss_pred             HHHH
Confidence            4433

>d1z45a2 c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.21  E-value=0.21  Score=37.16  Aligned_cols=51  Identities=8%  Similarity=-0.017  Sum_probs=40.6

Q ss_pred             CCCcceEEeeCCCHHHHHHHHh--cCcEEEecCCCccch----------------hHHHHHHHHHcCCC
Q psy12849         29 VRTNRTTVVNTINESSILIMAK--KCRVILNCVGPYTWY----------------GEAVVKACIEAKTH   79 (138)
Q Consensus        29 ~~~~~~~~~D~~d~~~L~~~~~--~~dvVIn~~GPf~~~----------------~~~v~~Aci~~g~h   79 (138)
                      ..+++++++|+.|.+++.++++  +.|+|+|||+.....                -..++++|.+.++.
T Consensus        50 ~~~v~~~~~Dl~d~~~l~~~~~~~~~d~VihlAa~~~~~~~~~~~~~~~~~N~~~t~~ll~~~~~~~i~  118 (347)
T d1z45a2          50 KHHIPFYEVDLCDRKGLEKVFKEYKIDSVIHFAGLKAVGESTQIPLRYYHNNILGTVVLLELMQQYNVS  118 (347)
T ss_dssp             TSCCCEEECCTTCHHHHHHHHHHSCCCEEEECCSCCCHHHHHHSHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred             ccCCeEEEeecCCHHHHHHHHhccCCCEEEEccccccccccccCcccccccchhhhHHHHHHHHhcccc
Confidence            3578999999999999999998  679999999864311                12568889988863

>d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Escherichia coli [TaxId: 562]

Probab=91.93  E-value=0.088  Score=39.79  Aligned_cols=50  Identities=6%  Similarity=-0.114  Sum_probs=40.3

Q ss_pred             CCcceEEeeCCCHHHHHHHHhcC--cEEEecCCCccch----------------hHHHHHHHHHcCCC
Q psy12849         30 RTNRTTVVNTINESSILIMAKKC--RVILNCVGPYTWY----------------GEAVVKACIEAKTH   79 (138)
Q Consensus        30 ~~~~~~~~D~~d~~~L~~~~~~~--dvVIn~~GPf~~~----------------~~~v~~Aci~~g~h   79 (138)
                      .+++++++|+.|.+++.+.++++  |+|+++++.....                -..++++|.+.++.
T Consensus        55 ~~~~~~~~Dl~d~~~~~~~~~~~~~d~v~h~aa~~~~~~~~~~~~~~~~~Nv~gt~nllea~~~~~~~  122 (357)
T d1db3a_          55 PKFHLHYGDLSDTSNLTRILREVQPDEVYNLGAMSHVAVSFESPEYTADVDAMGTLRLLEAIRFLGLE  122 (357)
T ss_dssp             CCEEECCCCSSCHHHHHHHHHHHCCSEEEECCCCCTTTTTTSCHHHHHHHHTHHHHHHHHHHHHTTCT
T ss_pred             CCeEEEEeecCCHHHHHHHHhccCCCEEEEeecccccchhhhCHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            57899999999999999999976  9999999863311                13578999887764

>d1gr0a1 c.2.1.3 (A:14-200,A:312-367) Myo-inositol 1-phosphate synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Myo-inositol 1-phosphate synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=91.39  E-value=0.2  Score=37.34  Aligned_cols=59  Identities=17%  Similarity=0.288  Sum_probs=44.5

Q ss_pred             HHHHHh--cCcEEEecCCCccch--hHHHHHHHHHcCCCeeeC-----CCChHHHHHHHHHhHHHHHhCCCEEEeCC
Q psy12849         45 ILIMAK--KCRVILNCVGPYTWY--GEAVVKACIEAKTHHVDI-----TGEPYFMEYMQYEYNTRAQESEVCVVSAC  112 (138)
Q Consensus        45 L~~~~~--~~dvVIn~~GPf~~~--~~~v~~Aci~~g~hYvDi-----sge~~~~~~~~~~~~~~A~~~gv~iv~~~  112 (138)
                      +.+.++  +.||+||-. |...-  .+--+++|+++|+++|-.     ..++.|.        ++++++|++++-.-
T Consensus       117 vv~~Lk~~~~dVlvnyl-PvGse~A~~~YA~~al~Ag~aFVN~iP~fIAsdp~w~--------~kF~e~glpivGDD  184 (243)
T d1gr0a1         117 VVQALKEAKVDVLVSYL-PVGSEEADKFYAQCAIDAGVAFVNALPVFIASDPVWA--------KKFTDARVPIVGDD  184 (243)
T ss_dssp             HHHHHHHTTCSEEEECC-CTTCHHHHHHHHHHHHHHTCEEEECSSCCSTTSHHHH--------HHHHHHTCEEEESS
T ss_pred             HHHHHHhcCCCEEEEec-CCCcHHHHHHHHHHHHHcCceEEecccccccCCHHHH--------HHHHHcCCcEEccc
Confidence            556666  689999999 88754  345688999999999984     4455553        45678899998754

>d2czca2 c.2.1.3 (A:1-139,A:302-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=90.52  E-value=0.15  Score=35.77  Aligned_cols=72  Identities=13%  Similarity=-0.063  Sum_probs=48.9

Q ss_pred             HHHHHHhcCcEEEecCCCccchhHHHHHHHHHcCCCeeeCCCChHH------HHHHHHHhHHHHHhCCCEEEeCCCCccc
Q psy12849         44 SILIMAKKCRVILNCVGPYTWYGEAVVKACIEAKTHHVDITGEPYF------MEYMQYEYNTRAQESEVCVVSACGIETL  117 (138)
Q Consensus        44 ~L~~~~~~~dvVIn~~GPf~~~~~~v~~Aci~~g~hYvDisge~~~------~~~~~~~~~~~A~~~gv~iv~~~G~d~~  117 (138)
                      .+..+.+++|+||.|.|.|...  .-++..+++|+.+|=+++++.-      ...+  . |++...+....+.+|+   .
T Consensus        72 ~~~~~~~~vDvViEcTG~f~~~--~~~~~hl~~G~k~Vi~s~~~~~~~~~t~v~Gv--N-h~~~~~~~~~~v~scs---c  143 (172)
T d2czca2          72 TLNDLLEKVDIIVDATPGGIGA--KNKPLYEKAGVKAIFQGGEKADVAEVSFVAQA--N-YEAALGKNYVRVVVIP---E  143 (172)
T ss_dssp             BHHHHHTTCSEEEECCSTTHHH--HHHHHHHHHTCEEEECTTSCGGGSSEEECHHH--H-GGGGTTCSEEEECTHH---H
T ss_pred             hhhhhhccCCEEEECCCCCCCH--HHHHHHHHcCCCEEEECCCCcccCCCeeEecc--c-chhhcCCCceEEEecC---c
Confidence            3566678999999999988653  5678999999999999886443      2221  2 2344444556677775   4


Q ss_pred             hHhHHH
Q psy12849        118 PIDMGV  123 (138)
Q Consensus       118 p~dl~~  123 (138)
                      -++..+
T Consensus       144 tTn~la  149 (172)
T d2czca2         144 NIDAIR  149 (172)
T ss_dssp             HHHHHH
T ss_pred             hHHHHH
Confidence            555555

>d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Escherichia coli [TaxId: 562]

Probab=90.45  E-value=0.15  Score=37.96  Aligned_cols=49  Identities=10%  Similarity=0.035  Sum_probs=39.3

Q ss_pred             CCcceEEeeCCCHHHHHHHHh--cCcEEEecCCCccc-h---------------hHHHHHHHHHcCC
Q psy12849         30 RTNRTTVVNTINESSILIMAK--KCRVILNCVGPYTW-Y---------------GEAVVKACIEAKT   78 (138)
Q Consensus        30 ~~~~~~~~D~~d~~~L~~~~~--~~dvVIn~~GPf~~-~---------------~~~v~~Aci~~g~   78 (138)
                      .+++++++|+.|.+.+.++++  ++|+|||+|+.... .               -..++++|.+.|+
T Consensus        50 ~~~~~~~~Dl~d~~~l~~~~~~~~~d~ViHlAa~~~~~~~~~~~~~~~~~Nv~gt~nlL~~~~~~~v  116 (338)
T d1udca_          50 KHPTFVEGDIRNEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANV  116 (338)
T ss_dssp             SCCEEEECCTTCHHHHHHHHHHTTCSEEEECCSCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             CCCEEEEeecCCHHHHHHHHhccCCCEEEECCCccchhhHHhCHHHHHHhHHHHHHHHHHHHHHhCC
Confidence            578999999999999999999  78999999974220 0               1257899988886

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.38  E-value=0.22  Score=36.39  Aligned_cols=34  Identities=24%  Similarity=0.158  Sum_probs=28.9

Q ss_pred             CCcceEEeeCCCHHHHHHHHhc-------CcEEEecCCCcc
Q psy12849         30 RTNRTTVVNTINESSILIMAKK-------CRVILNCVGPYT   63 (138)
Q Consensus        30 ~~~~~~~~D~~d~~~L~~~~~~-------~dvVIn~~GPf~   63 (138)
                      .++.++++|++|++++.++++.       .|++||++|.+.
T Consensus        61 ~~~~~~~~Dls~~~~v~~~v~~~~~~~g~iD~lVnnAg~~~  101 (257)
T d1xg5a_          61 GTLIPYRCDLSNEEDILSMFSAIRSQHSGVDICINNAGLAR  101 (257)
T ss_dssp             SEEEEEECCTTCHHHHHHHHHHHHHHHCCCSEEEECCCCCC
T ss_pred             ceEEEEEccCCCHHHHHHHHHHHHHhcCCCCEEEecccccC
Confidence            4678899999999998887774       699999998764

>d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: TAT-interacting protein TIP30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.37  E-value=0.062  Score=38.34  Aligned_cols=50  Identities=10%  Similarity=-0.012  Sum_probs=41.6

Q ss_pred             CCcceEEeeCCCHHHHHHHHhcCcEEEecCCCccch-------------hHHHHHHHHHcCCC
Q psy12849         30 RTNRTTVVNTINESSILIMAKKCRVILNCVGPYTWY-------------GEAVVKACIEAKTH   79 (138)
Q Consensus        30 ~~~~~~~~D~~d~~~L~~~~~~~dvVIn~~GPf~~~-------------~~~v~~Aci~~g~h   79 (138)
                      ..++...+|.++.+++.+.++++|+|++|+|.....             ...++++|.+.|+.
T Consensus        59 ~~i~~~~~D~~~~~~~~~~~~~~d~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~v~  121 (232)
T d2bkaa1          59 KNVNQEVVDFEKLDDYASAFQGHDVGFCCLGTTRGKAGAEGFVRVDRDYVLKSAELAKAGGCK  121 (232)
T ss_dssp             GGCEEEECCGGGGGGGGGGGSSCSEEEECCCCCHHHHHHHHHHHHHTHHHHHHHHHHHHTTCC
T ss_pred             ceeeeeeecccccccccccccccccccccccccccccchhhhhhhcccccceeeecccccCcc
Confidence            467888889999999999999999999999875321             24689999999987

>d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein At5g02240 (T7H20 290)
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=90.25  E-value=0.17  Score=34.34  Aligned_cols=33  Identities=6%  Similarity=-0.036  Sum_probs=30.5

Q ss_pred             CCcceEEeeCCCHHHHHHHHhcCcEEEecCCCc
Q psy12849         30 RTNRTTVVNTINESSILIMAKKCRVILNCVGPY   62 (138)
Q Consensus        30 ~~~~~~~~D~~d~~~L~~~~~~~dvVIn~~GPf   62 (138)
                      .+++++..|..+.+.+.++++++|.|+++++..
T Consensus        47 ~~~~~~~~d~~~~~~~~~~~~~~d~vi~~a~~~   79 (252)
T d2q46a1          47 GEADVFIGDITDADSINPAFQGIDALVILTSAV   79 (252)
T ss_dssp             CCTTEEECCTTSHHHHHHHHTTCSEEEECCCCC
T ss_pred             CCcEEEEeeeccccccccccccceeeEEEEeec
Confidence            578999999999999999999999999999864

>d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Polymyxin resistance protein ArnA (PrmI)
species: Escherichia coli [TaxId: 562]

Probab=89.91  E-value=0.24  Score=36.50  Aligned_cols=52  Identities=17%  Similarity=0.165  Sum_probs=39.3

Q ss_pred             CCcceEEeeCCCHHHH-HHHHhcCcEEEecCCCccch----------------hHHHHHHHHHcCCCee
Q psy12849         30 RTNRTTVVNTINESSI-LIMAKKCRVILNCVGPYTWY----------------GEAVVKACIEAKTHHV   81 (138)
Q Consensus        30 ~~~~~~~~D~~d~~~L-~~~~~~~dvVIn~~GPf~~~----------------~~~v~~Aci~~g~hYv   81 (138)
                      .+++++..|+.+.+++ ..+.+++|+|+++++.....                ...++++|.+.++..+
T Consensus        45 ~~~~~i~~Di~~~~~~~~~~~~~~d~Vih~a~~~~~~~~~~~~~~~~~~nv~gt~~ll~~~~~~~~~~~  113 (342)
T d2blla1          45 PHFHFVEGDISIHSEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRII  113 (342)
T ss_dssp             TTEEEEECCTTTCSHHHHHHHHHCSEEEECBCCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHTTCEEE
T ss_pred             CCeEEEECccCChHHHHHHHHhCCCccccccccccccccccCCcccccccccccccccccccccccccc
Confidence            6788999999876554 44888999999999864321                2468899998888543

>d1vjpa1 c.2.1.3 (A:0-209,A:317-381) Hypothetical protein TM1419 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM1419
species: Thermotoga maritima [TaxId: 2336]

Probab=89.75  E-value=0.18  Score=38.15  Aligned_cols=41  Identities=15%  Similarity=0.126  Sum_probs=26.7

Q ss_pred             HHHHH-----HcCCCeeeCCCChHHHHHHHHHhHHHHHhCCCEEEeCCC
Q psy12849         70 VKACI-----EAKTHHVDITGEPYFMEYMQYEYNTRAQESEVCVVSACG  113 (138)
Q Consensus        70 ~~Aci-----~~g~hYvDisge~~~~~~~~~~~~~~A~~~gv~iv~~~G  113 (138)
                      +.||+     ++||.||..+-..-...   -.+-+.|+++|+.++-.-|
T Consensus       165 A~AAL~~~~~~aG~~fVN~~P~~ia~~---Pal~ela~~~gvPi~GdD~  210 (275)
T d1vjpa1         165 AYAAALYANKRGGAAFVNVIPTFIAND---PAFVELAKENNLVVFGDDG  210 (275)
T ss_dssp             HHHHHHHHHHHTCEEEEECSSSCSTTC---HHHHHHHHHTTEEEECSSB
T ss_pred             HHHHHHhhhccCCceeEeccCccccCC---HHHHHHHHHcCCcEEcccc
Confidence            56777     89999999655322211   1333678899999875544

>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=89.66  E-value=0.087  Score=36.30  Aligned_cols=70  Identities=21%  Similarity=0.218  Sum_probs=45.6

Q ss_pred             cCcEEEecCCCccchh------HHHHHHHHHcCCCeeeCCCChHHHHHHHHHhHHHHHhCCCEEEeCCCCccchHhHHHH
Q psy12849         51 KCRVILNCVGPYTWYG------EAVVKACIEAKTHHVDITGEPYFMEYMQYEYNTRAQESEVCVVSACGIETLPIDMGVL  124 (138)
Q Consensus        51 ~~dvVIn~~GPf~~~~------~~v~~Aci~~g~hYvDisge~~~~~~~~~~~~~~A~~~gv~iv~~~G~d~~p~dl~~~  124 (138)
                      ++|+||||. |-...+      .++-+..+..+.-.+|+...|.-+.     |-..|+++|..+++|.+       |+.+
T Consensus        73 ~~DliINaT-piGm~~~~~~~~l~~~~~~~~~~~~v~D~vY~P~~T~-----ll~~A~~~G~~~i~Gl~-------Mli~  139 (167)
T d1npya1          73 QADILVNVT-SIGMKGGKEEMDLAFPKAFIDNASVAFDVVAMPVETP-----FIRYAQARGKQTISGAA-------VIVL  139 (167)
T ss_dssp             CCSEEEECS-STTCTTSTTTTSCSSCHHHHHHCSEEEECCCSSSSCH-----HHHHHHHTTCEEECHHH-------HHHH
T ss_pred             chhhheecc-ccCCccccccccccccHhhcCCcceEEEEeeccCCCH-----HHHHHHHCCCeEEECHH-------HHHH
Confidence            679999998 422110      1233556778888999988765432     33568899999887544       5666


Q ss_pred             HHHHHhhhh
Q psy12849        125 MLQDSFEGH  133 (138)
Q Consensus       125 ~~~~~~~~~  133 (138)
                      -++.+|+==
T Consensus       140 Qa~~~f~lw  148 (167)
T d1npya1         140 QAVEQFELY  148 (167)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            666666543

>d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: R-specific alcohol dehydrogenase
species: Lactobacillus brevis [TaxId: 1580]

Probab=89.10  E-value=0.18  Score=36.75  Aligned_cols=34  Identities=9%  Similarity=0.030  Sum_probs=29.3

Q ss_pred             CCcceEEeeCCCHHHHHHHHhc-------CcEEEecCCCcc
Q psy12849         30 RTNRTTVVNTINESSILIMAKK-------CRVILNCVGPYT   63 (138)
Q Consensus        30 ~~~~~~~~D~~d~~~L~~~~~~-------~dvVIn~~GPf~   63 (138)
                      .++.++++|+.|++++.++++.       .|++||++|...
T Consensus        54 ~~~~~~~~Dv~~~~~v~~~~~~~~~~~G~iDiLVnnAg~~~   94 (251)
T d1zk4a1          54 DQIQFFQHDSSDEDGWTKLFDATEKAFGPVSTLVNNAGIAV   94 (251)
T ss_dssp             TTEEEEECCTTCHHHHHHHHHHHHHHHSSCCEEEECCCCCC
T ss_pred             CcEEEEEccCCCHHHHHHHHHHHHHHhCCceEEEecccccc
Confidence            5788999999999998888874       599999998754

>d1yo6a1 c.2.1.2 (A:1-250) Putative carbonyl reductase sniffer {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative carbonyl reductase sniffer
species: Caenorhabditis elegans [TaxId: 6239]

Probab=88.96  E-value=0.22  Score=35.90  Aligned_cols=34  Identities=12%  Similarity=0.142  Sum_probs=28.3

Q ss_pred             CCcceEEeeCCCHHHHHHHHhc---------CcEEEecCCCcc
Q psy12849         30 RTNRTTVVNTINESSILIMAKK---------CRVILNCVGPYT   63 (138)
Q Consensus        30 ~~~~~~~~D~~d~~~L~~~~~~---------~dvVIn~~GPf~   63 (138)
                      .++.++++|++|++++.++++.         .|++||++|-+.
T Consensus        51 ~~~~~~~~Dvs~~~~v~~~~~~i~~~~~~~~idilinnAG~~~   93 (250)
T d1yo6a1          51 SRVHVLPLTVTCDKSLDTFVSKVGEIVGSDGLSLLINNAGVLL   93 (250)
T ss_dssp             TTEEEEECCTTCHHHHHHHHHHHHHHHGGGCCCEEEECCCCCC
T ss_pred             CceEEEEEecCCHHHHHHHHHHHHHHhCCCCeEEEEEcCcccC
Confidence            5789999999999998877652         699999999543

>d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Phenylcoumaran benzylic ether reductase
species: Loblolly pine (Pinus taeda) [TaxId: 3352]

Probab=88.50  E-value=0.66  Score=32.40  Aligned_cols=52  Identities=17%  Similarity=0.158  Sum_probs=44.4

Q ss_pred             CCcceEEeeCCCHHHHHHHHhcCcEEEecCCCccchh-HHHHHHHHHcCCCee
Q psy12849         30 RTNRTTVVNTINESSILIMAKKCRVILNCVGPYTWYG-EAVVKACIEAKTHHV   81 (138)
Q Consensus        30 ~~~~~~~~D~~d~~~L~~~~~~~dvVIn~~GPf~~~~-~~v~~Aci~~g~hYv   81 (138)
                      ..++++..|+.+...+.+.+++++.|++++++....+ ..++++|.++++..+
T Consensus        55 ~~~~~~~~d~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~a~~~~~~~~~  107 (307)
T d1qyca_          55 SGANIVHGSIDDHASLVEAVKNVDVVISTVGSLQIESQVNIIKAIKEVGTVKR  107 (307)
T ss_dssp             TTCEEECCCTTCHHHHHHHHHTCSEEEECCCGGGSGGGHHHHHHHHHHCCCSE
T ss_pred             CCcEEEEeecccchhhhhhhhhceeeeecccccccchhhHHHHHHHHhccccc
Confidence            4678899999999999999999999999998877664 678899988876543

>d2q02a1 c.1.15.4 (A:1-271) Putative cytoplasmic protein STM4435 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Xylose isomerase-like
family: IolI-like
domain: Putative cytoplasmic protein STM4435
species: Salmonella typhimurium [TaxId: 90371]

Probab=88.20  E-value=1.7  Score=30.82  Aligned_cols=94  Identities=9%  Similarity=0.100  Sum_probs=63.7

Q ss_pred             HHHHhhhhcCCCCcceE-------EeeCCCHHHHHHHHhcCcEEEecCC---Cccch-------hHHHHHHHHHcCCCee
Q psy12849         19 LFLQKASWFGVRTNRTT-------VVNTINESSILIMAKKCRVILNCVG---PYTWY-------GEAVVKACIEAKTHHV   81 (138)
Q Consensus        19 ~~~~~a~~~~~~~~~~~-------~~D~~d~~~L~~~~~~~dvVIn~~G---Pf~~~-------~~~v~~Aci~~g~hYv   81 (138)
                      ..++.+++.|.+.+++.       ..|-.+.+++.+++++..+-|.+.+   ||...       ..+.++.|.+.|+++|
T Consensus        22 e~l~~a~~~G~dgiEl~~~~~~~~~~~~~~~~~~k~~l~~~gl~i~~l~~~~~~~~~~~~~~~~~~~~i~~a~~lG~~~v  101 (271)
T d2q02a1          22 AFFRLVKRLEFNKVELRNDMPSGSVTDDLNYNQVRNLAEKYGLEIVTINAVYPFNQLTEEVVKKTEGLLRDAQGVGARAL  101 (271)
T ss_dssp             HHHHHHHHTTCCEEEEETTSTTSSTTTTCCHHHHHHHHHHTTCEEEEEEEETTTTSCCHHHHHHHHHHHHHHHHHTCSEE
T ss_pred             HHHHHHHHhCCCEEEEecCcccccccccCCHHHHHHHHHHcCCcEEEeecccccCCCCHHHHHHHHHHHHHHHHcCCcEE
Confidence            35677888877666653       2244567899999999887766654   44322       1467889999999998


Q ss_pred             eCCC-------ChHHHHHHHHHhHHHHHhCCCEEEeCC
Q psy12849         82 DITG-------EPYFMEYMQYEYNTRAQESEVCVVSAC  112 (138)
Q Consensus        82 Disg-------e~~~~~~~~~~~~~~A~~~gv~iv~~~  112 (138)
                      =+..       ......+...++-+.|++.|+++...-
T Consensus       102 ~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~l~lE~  139 (271)
T d2q02a1         102 VLCPLNDGTIVPPEVTVEAIKRLSDLFARYDIQGLVEP  139 (271)
T ss_dssp             EECCCCSSBCCCHHHHHHHHHHHHHHHHTTTCEEEECC
T ss_pred             EEecCCCCccchHHHHHHHHHHHHHHhccCCeEEEEee
Confidence            6422       122333333577788999999999863

>d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose-3', 5'-epimerase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=88.01  E-value=0.67  Score=34.29  Aligned_cols=53  Identities=9%  Similarity=0.012  Sum_probs=42.3

Q ss_pred             CCcceEEeeCCCHHHHHHHHhcCcEEEecCCCccchh-----------------HHHHHHHHHcCCC-eee
Q psy12849         30 RTNRTTVVNTINESSILIMAKKCRVILNCVGPYTWYG-----------------EAVVKACIEAKTH-HVD   82 (138)
Q Consensus        30 ~~~~~~~~D~~d~~~L~~~~~~~dvVIn~~GPf~~~~-----------------~~v~~Aci~~g~h-YvD   82 (138)
                      ...++...|+.+.+.+.++++++|.||+++++.....                 ..++++|.+.|+- +|-
T Consensus        58 ~~~~~~~~D~~~~~~~~~~~~~~d~Vih~a~~~~~~~~~~~~~~~~~~~n~~gt~~ll~~~~~~~vk~~i~  128 (363)
T d2c5aa1          58 FCDEFHLVDLRVMENCLKVTEGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMIEAARINGIKRFFY  128 (363)
T ss_dssp             TCSEEEECCTTSHHHHHHHHTTCSEEEECCCCCCCHHHHTTCHHHHHHHHHHHHHHHHHHHHHTTCSEEEE
T ss_pred             ccCcEEEeechhHHHHHHHhhcCCeEeecccccccccccccccccccccccchhhHHHHhHHhhCcccccc
Confidence            4568889999999999999999999999997765422                 3478899998874 443

>d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Rhizome secoisolariciresinol dehydrogenase
species: Mayapple (Podophyllum peltatum) [TaxId: 35933]

Probab=87.81  E-value=0.34  Score=35.33  Aligned_cols=34  Identities=9%  Similarity=0.170  Sum_probs=28.7

Q ss_pred             CCcceEEeeCCCHHHHHHHHh-------cCcEEEecCCCcc
Q psy12849         30 RTNRTTVVNTINESSILIMAK-------KCRVILNCVGPYT   63 (138)
Q Consensus        30 ~~~~~~~~D~~d~~~L~~~~~-------~~dvVIn~~GPf~   63 (138)
                      ..+.++.+|+.|++++.++++       +.|++||++|.+.
T Consensus        54 ~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iD~lVnnAG~~~   94 (268)
T d2bgka1          54 DVISFVHCDVTKDEDVRNLVDTTIAKHGKLDIMFGNVGVLS   94 (268)
T ss_dssp             TTEEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEECCCCCC
T ss_pred             CceEEEEccCCCHHHHHHHHHHHHHHcCCcceecccccccc
Confidence            457789999999999998886       4699999999643

>d1tlta1 c.2.1.3 (A:5-127,A:268-308) Virulence factor MviM {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Virulence factor MviM
species: Escherichia coli [TaxId: 562]

Probab=87.37  E-value=1.5  Score=29.10  Aligned_cols=61  Identities=13%  Similarity=0.106  Sum_probs=42.3

Q ss_pred             HHHHHhcCcEEEecCCCccchhHHHHHHHHHcCCCeee---CCCChHHHHHHHHHhHHHHHhCCCEEEeC
Q psy12849         45 ILIMAKKCRVILNCVGPYTWYGEAVVKACIEAKTHHVD---ITGEPYFMEYMQYEYNTRAQESEVCVVSA  111 (138)
Q Consensus        45 L~~~~~~~dvVIn~~GPf~~~~~~v~~Aci~~g~hYvD---isge~~~~~~~~~~~~~~A~~~gv~iv~~  111 (138)
                      +..+.++.|+|+-|. |-..+ ..+++.|+++|.|.+=   ++-...-.+    ++-+.|+++|+.+..+
T Consensus        55 ~~~l~~~~D~V~I~t-p~~~h-~~~~~~al~~gk~V~~EKPla~~~~e~~----~l~~~a~~~~~~~~v~  118 (164)
T d1tlta1          55 LSSLAASCDAVFVHS-STASH-FDVVSTLLNAGVHVCVDKPLAENLRDAE----RLVELAARKKLTLMVG  118 (164)
T ss_dssp             HHHHHTTCSEEEECS-CTTHH-HHHHHHHHHTTCEEEEESSSCSSHHHHH----HHHHHHHHTTCCEEEE
T ss_pred             chhhhhhcccccccc-cchhc-cccccccccccceeeccccccCCHHHHH----HHHHHHHHcCCcEEEE
Confidence            455568999999998 55555 4789999999999753   333333333    3446788899877654

>d1gy8a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Trypanosoma brucei [TaxId: 5691]

Probab=87.30  E-value=0.87  Score=34.02  Aligned_cols=52  Identities=12%  Similarity=-0.005  Sum_probs=40.3

Q ss_pred             CCcceEEeeCCCHHHHHHHHh---cCcEEEecCCCccch----------------hHHHHHHHHHcCCCee
Q psy12849         30 RTNRTTVVNTINESSILIMAK---KCRVILNCVGPYTWY----------------GEAVVKACIEAKTHHV   81 (138)
Q Consensus        30 ~~~~~~~~D~~d~~~L~~~~~---~~dvVIn~~GPf~~~----------------~~~v~~Aci~~g~hYv   81 (138)
                      ....+++.|+.|++.|.++++   ++|+|+++|++....                ...++++|.+.++..+
T Consensus        69 ~~~~~~~~Di~d~~~l~~~~~~~~~~d~ViH~Aa~~~~~~~~~~~~~~~~~N~~~t~~~l~~~~~~~~~~~  139 (383)
T d1gy8a_          69 RYAALEVGDVRNEDFLNGVFTRHGPIDAVVHMCAFLAVGESVRDPLKYYDNNVVGILRLLQAMLLHKCDKI  139 (383)
T ss_dssp             CCCEEEESCTTCHHHHHHHHHHSCCCCEEEECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEE
T ss_pred             cceEEEECcccCHHHhhhhhhccceeehhhcccccccccccccccccccccccccccccchhhhccCCccc
Confidence            467899999999999999997   469999999864311                1356688999887654

>d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Pinoresinol-lariciresinol reductase
species: Giant arborvitae (Thuja plicata) [TaxId: 3316]

Probab=86.97  E-value=0.95  Score=31.92  Aligned_cols=49  Identities=12%  Similarity=0.048  Sum_probs=39.3

Q ss_pred             CCCcceEEeeCCCHHHHHHHHhcCcEEEecCCCccch-----hHHHHHHHHHcC
Q psy12849         29 VRTNRTTVVNTINESSILIMAKKCRVILNCVGPYTWY-----GEAVVKACIEAK   77 (138)
Q Consensus        29 ~~~~~~~~~D~~d~~~L~~~~~~~dvVIn~~GPf~~~-----~~~v~~Aci~~g   77 (138)
                      ..++++++.|+.|.+++.+.+++++.+++++++....     ....+++|.+.+
T Consensus        53 ~~~v~~v~~d~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~  106 (312)
T d1qyda_          53 QLGAKLIEASLDDHQRLVDALKQVDVVISALAGGVLSHHILEQLKLVEAIKEAG  106 (312)
T ss_dssp             TTTCEEECCCSSCHHHHHHHHTTCSEEEECCCCSSSSTTTTTHHHHHHHHHHSC
T ss_pred             cCCcEEEEeecccchhhhhhccCcchhhhhhhhcccccchhhhhHHHHHHHHhc
Confidence            3568999999999999999999999999999764321     246677777764

>d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (s)-1-phenylethanol dehydrogenase
species: Azoarcus sp. ebn1 [TaxId: 76114]

Probab=86.90  E-value=0.34  Score=35.06  Aligned_cols=34  Identities=21%  Similarity=0.421  Sum_probs=29.1

Q ss_pred             CCcceEEeeCCCHHHHHHHHh-------cCcEEEecCCCcc
Q psy12849         30 RTNRTTVVNTINESSILIMAK-------KCRVILNCVGPYT   63 (138)
Q Consensus        30 ~~~~~~~~D~~d~~~L~~~~~-------~~dvVIn~~GPf~   63 (138)
                      .++..+++|++|++++.++++       +.|++||++|.+.
T Consensus        52 ~~~~~~~~Dvs~~~~v~~~~~~~~~~~G~iDilVnnAG~~~   92 (247)
T d2ew8a1          52 RRVLTVKCDVSQPGDVEAFGKQVISTFGRCDILVNNAGIYP   92 (247)
T ss_dssp             CCEEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEECCCCCC
T ss_pred             CcEEEEEeeCCCHHHHHHHHHHHHHHcCCCCEEEECCCCCC
Confidence            467899999999999998876       4799999999754

>d1oc2a_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptococcus suis, serotype 2 [TaxId: 1307]

Probab=86.89  E-value=0.84  Score=33.60  Aligned_cols=52  Identities=10%  Similarity=0.005  Sum_probs=42.6

Q ss_pred             CCcceEEeeCCCHHHHHHHHhcCcEEEecCCCccch----------------hHHHHHHHHHcCCCee
Q psy12849         30 RTNRTTVVNTINESSILIMAKKCRVILNCVGPYTWY----------------GEAVVKACIEAKTHHV   81 (138)
Q Consensus        30 ~~~~~~~~D~~d~~~L~~~~~~~dvVIn~~GPf~~~----------------~~~v~~Aci~~g~hYv   81 (138)
                      .+++++.+|+.|.+.+..++.+++.|++++++....                ...++++|...+..++
T Consensus        52 ~~i~~~~~Di~d~~~~~~~~~~~~~v~~~a~~~~~~~~~~~~~~~~~~N~~g~~nll~~~~~~~~k~i  119 (346)
T d1oc2a_          52 DRVELVVGDIADAELVDKLAAKADAIVHYAAESHNDNSLNDPSPFIHTNFIGTYTLLEAARKYDIRFH  119 (346)
T ss_dssp             SSEEEEECCTTCHHHHHHHHTTCSEEEECCSCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHHTCEEE
T ss_pred             CCeEEEEccCCCHHHHHHHHhhhhhhhhhhhcccccchhhCcccceeeehHhHHhhhhhhcccccccc
Confidence            578999999999999999999999999999875421                2356788999887544

>d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=86.37  E-value=0.35  Score=34.90  Aligned_cols=33  Identities=6%  Similarity=-0.091  Sum_probs=28.6

Q ss_pred             CCcceEEeeCCCHHHHHHHHhc---CcEEEecCCCc
Q psy12849         30 RTNRTTVVNTINESSILIMAKK---CRVILNCVGPY   62 (138)
Q Consensus        30 ~~~~~~~~D~~d~~~L~~~~~~---~dvVIn~~GPf   62 (138)
                      ..+..+++|+.|++++++++++   .|++||++|..
T Consensus        50 ~~~~~~~~Dv~~~~~v~~~~~~~g~iDilVnnAg~~   85 (242)
T d1cyda_          50 PGIEPVCVDLGDWDATEKALGGIGPVDLLVNNAALV   85 (242)
T ss_dssp             TTCEEEECCTTCHHHHHHHHTTCCCCSEEEECCCCC
T ss_pred             CCCeEEEEeCCCHHHHHHHHHHcCCCeEEEECCccc
Confidence            3578899999999999999985   59999999853

>d1ygya2 c.23.12.1 (A:3-98,A:283-316) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: Phosphoglycerate dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=86.31  E-value=0.97  Score=29.62  Aligned_cols=71  Identities=17%  Similarity=0.140  Sum_probs=49.8

Q ss_pred             CCcceEEeeCCCHHHHHHHHhcCcEEEecCCCccchhHHHHHHHHH--------cCCCeeeCCCChHHHHHHHHHhHHHH
Q psy12849         30 RTNRTTVVNTINESSILIMAKKCRVILNCVGPYTWYGEAVVKACIE--------AKTHHVDITGEPYFMEYMQYEYNTRA  101 (138)
Q Consensus        30 ~~~~~~~~D~~d~~~L~~~~~~~dvVIn~~GPf~~~~~~v~~Aci~--------~g~hYvDisge~~~~~~~~~~~~~~A  101 (138)
                      +..++...+..+.+++.+.++++|++|-..++.  ..+.+++++=+        .|.+.||+               +.|
T Consensus        21 ~~~~v~~~~~~~~~el~~~~~~~d~ii~~~~~~--i~~~~l~~~p~Lk~I~~~g~G~d~IDl---------------~~~   83 (130)
T d1ygya2          21 DQVEVRWVDGPDRDKLLAAVPEADALLVRSATT--VDAEVLAAAPKLKIVARAGVGLDNVDV---------------DAA   83 (130)
T ss_dssp             SSSEEEECCTTSHHHHHHHGGGCSEEEECSSSC--BCHHHHHTCTTCCEEEESSSCCTTBCH---------------HHH
T ss_pred             CCcEEEECCCCCHHHHHHHcCCCEEEEEcCccc--chHHHHhhcccceEEeeecccccchhH---------------HHH
Confidence            356777777778899999999999877654432  33577776622        34555555               457


Q ss_pred             HhCCCEEEeCCCCccc
Q psy12849        102 QESEVCVVSACGIETL  117 (138)
Q Consensus       102 ~~~gv~iv~~~G~d~~  117 (138)
                      +++|+.+.+.-|..+-
T Consensus        84 ~~~gI~V~n~p~~~~~   99 (130)
T d1ygya2          84 TARGVLVVNAPTSAST   99 (130)
T ss_dssp             HHTTCEEECCTTSSCB
T ss_pred             HHCCceEEecCCCCcH
Confidence            8899999998876444

>d1n2sa_ c.2.1.2 (A:) dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {Salmonella enterica serovar typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD)
species: Salmonella enterica serovar typhimurium [TaxId: 90371]

Probab=85.82  E-value=0.3  Score=34.59  Aligned_cols=48  Identities=23%  Similarity=0.138  Sum_probs=35.5

Q ss_pred             EEeeCCCHHHHHHHHhcC--cEEEecCCCcc----------------chhHHHHHHHHHcCCCeee
Q psy12849         35 TVVNTINESSILIMAKKC--RVILNCVGPYT----------------WYGEAVVKACIEAKTHHVD   82 (138)
Q Consensus        35 ~~~D~~d~~~L~~~~~~~--dvVIn~~GPf~----------------~~~~~v~~Aci~~g~hYvD   82 (138)
                      ...|+.|.+.+.+++++.  |+||||||-..                .....+.++|.+.+++++=
T Consensus        36 ~~~Dl~~~~~~~~~i~~~~~D~Vih~Aa~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~  101 (298)
T d1n2sa_          36 FCGDFSNPKGVAETVRKLRPDVIVNAAAHTAVDKAESEPELAQLLNATSVEAIAKAANETGAWVVH  101 (298)
T ss_dssp             SCCCTTCHHHHHHHHHHHCCSEEEECCCCCCHHHHTTCHHHHHHHHTHHHHHHHHHHTTTTCEEEE
T ss_pred             ccCcCCCHHHHHHHHHHcCCCEEEEecccccccccccCccccccccccccccchhhhhcccccccc
Confidence            457899999999999865  99999998422                1123678888888776543

>d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Streptomyces coelicolor [TaxId: 1902]

Probab=85.65  E-value=0.38  Score=34.78  Aligned_cols=33  Identities=12%  Similarity=0.106  Sum_probs=28.0

Q ss_pred             CCcceEEeeCCCHHHHHHHHhc-------CcEEEecCCCc
Q psy12849         30 RTNRTTVVNTINESSILIMAKK-------CRVILNCVGPY   62 (138)
Q Consensus        30 ~~~~~~~~D~~d~~~L~~~~~~-------~dvVIn~~GPf   62 (138)
                      .++.++++|++|++++.++++.       .|++||++|-.
T Consensus        51 ~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~iDilVnnAG~~   90 (257)
T d2rhca1          51 VEADGRTCDVRSVPEIEALVAAVVERYGPVDVLVNNAGRP   90 (257)
T ss_dssp             CCEEEEECCTTCHHHHHHHHHHHHHHTCSCSEEEECCCCC
T ss_pred             CcEEEEEeecCCHHHHHHHHHHHHHHhCCCCEEEeccccc
Confidence            3678899999999999988874       69999999843

>d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative oxidoreductase Rv2002
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=85.42  E-value=0.47  Score=34.36  Aligned_cols=34  Identities=12%  Similarity=0.146  Sum_probs=28.4

Q ss_pred             CCcceEEeeCCCHHHHHHHHhc-------CcEEEecCCCcc
Q psy12849         30 RTNRTTVVNTINESSILIMAKK-------CRVILNCVGPYT   63 (138)
Q Consensus        30 ~~~~~~~~D~~d~~~L~~~~~~-------~dvVIn~~GPf~   63 (138)
                      .+..++++|++|++++.++++.       .|++||++|.+.
T Consensus        52 ~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~idilinnAG~~~   92 (244)
T d1nffa_          52 DAARYVHLDVTQPAQWKAAVDTAVTAFGGLHVLVNNAGILN   92 (244)
T ss_dssp             GGEEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEECCCCCC
T ss_pred             CcceEEEeecCCHHHHHHHHHHHHHHhCCCeEEEECCcccC
Confidence            3567899999999998888764       699999999754

>d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Levodione reductase
species: Corynebacterium aquaticum [TaxId: 144185]

Probab=85.13  E-value=0.46  Score=34.60  Aligned_cols=33  Identities=18%  Similarity=0.120  Sum_probs=27.9

Q ss_pred             CCcceEEeeCCCHHHHHHHHhc-------CcEEEecCCCc
Q psy12849         30 RTNRTTVVNTINESSILIMAKK-------CRVILNCVGPY   62 (138)
Q Consensus        30 ~~~~~~~~D~~d~~~L~~~~~~-------~dvVIn~~GPf   62 (138)
                      .++..+++|++|++++.++++.       .|++||++|..
T Consensus        55 ~~~~~~~~Dvt~~~~v~~~~~~~~~~~G~iDiLVnnAG~~   94 (258)
T d1iy8a_          55 AEVLTTVADVSDEAQVEAYVTATTERFGRIDGFFNNAGIE   94 (258)
T ss_dssp             CCEEEEECCTTSHHHHHHHHHHHHHHHSCCSEEEECCCCC
T ss_pred             CeEEEEeccCCCHHHHHHHHHHHHHHhCCCCEEEECCccc
Confidence            4678899999999999888763       69999999854

>d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.10  E-value=0.49  Score=34.08  Aligned_cols=34  Identities=6%  Similarity=-0.101  Sum_probs=29.0

Q ss_pred             CCcceEEeeCCCHHHHHHHHhc---CcEEEecCCCcc
Q psy12849         30 RTNRTTVVNTINESSILIMAKK---CRVILNCVGPYT   63 (138)
Q Consensus        30 ~~~~~~~~D~~d~~~L~~~~~~---~dvVIn~~GPf~   63 (138)
                      ..+..+++|+.|+++++++++.   .|++||++|...
T Consensus        52 ~~~~~~~~Dv~d~~~v~~~~~~~g~iDilVnnAg~~~   88 (244)
T d1pr9a_          52 PGIEPVCVDLGDWEATERALGSVGPVDLLVNNAAVAL   88 (244)
T ss_dssp             TTCEEEECCTTCHHHHHHHHTTCCCCCEEEECCCCCC
T ss_pred             CCCeEEEEeCCCHHHHHHHHHHhCCceEEEecccccc
Confidence            3578899999999999999986   599999998643

>d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sulfolipid biosynthesis protein SQD1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=85.02  E-value=0.46  Score=35.71  Aligned_cols=32  Identities=6%  Similarity=-0.077  Sum_probs=29.0

Q ss_pred             CCcceEEeeCCCHHHHHHHHhcC--cEEEecCCC
Q psy12849         30 RTNRTTVVNTINESSILIMAKKC--RVILNCVGP   61 (138)
Q Consensus        30 ~~~~~~~~D~~d~~~L~~~~~~~--dvVIn~~GP   61 (138)
                      .+++++..|+.|.+.+.++++++  |+|+|+|+.
T Consensus        67 ~~i~~~~~Dl~d~~~l~~~~~~~~~d~ViHlAa~  100 (393)
T d1i24a_          67 KSIELYVGDICDFEFLAESFKSFEPDSVVHFGEQ  100 (393)
T ss_dssp             CCCEEEESCTTSHHHHHHHHHHHCCSEEEECCSC
T ss_pred             CCcEEEEccCCCHHHHHHHHHhhcchheeccccc
Confidence            57899999999999999999975  999999974

>d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Gluconate 5-dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=84.73  E-value=0.45  Score=34.49  Aligned_cols=32  Identities=9%  Similarity=0.084  Sum_probs=27.5

Q ss_pred             CCcceEEeeCCCHHHHHHHHhc-------CcEEEecCCC
Q psy12849         30 RTNRTTVVNTINESSILIMAKK-------CRVILNCVGP   61 (138)
Q Consensus        30 ~~~~~~~~D~~d~~~L~~~~~~-------~dvVIn~~GP   61 (138)
                      .++.++++|+.|++++.++++.       .|++||++|-
T Consensus        55 ~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iDiLVnnAG~   93 (251)
T d1vl8a_          55 VETMAFRCDVSNYEEVKKLLEAVKEKFGKLDTVVNAAGI   93 (251)
T ss_dssp             CCEEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred             CcEEEEEccCCCHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence            3677899999999999888864       6999999984

>d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus [TaxId: 274]

Probab=84.62  E-value=0.46  Score=34.23  Aligned_cols=32  Identities=9%  Similarity=0.068  Sum_probs=27.0

Q ss_pred             CcceEEeeCCCHHHHHHHHhc-------CcEEEecCCCc
Q psy12849         31 TNRTTVVNTINESSILIMAKK-------CRVILNCVGPY   62 (138)
Q Consensus        31 ~~~~~~~D~~d~~~L~~~~~~-------~dvVIn~~GPf   62 (138)
                      +...+++|+.|++++.+++++       .|++||++|-+
T Consensus        50 ~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iDilVnnAG~~   88 (242)
T d1ulsa_          50 GAHPVVMDVADPASVERGFAEALAHLGRLDGVVHYAGIT   88 (242)
T ss_dssp             TCEEEECCTTCHHHHHHHHHHHHHHHSSCCEEEECCCCC
T ss_pred             CCeEEEEecCCHHHHHHHHHHHHHhcCCceEEEECCccc
Confidence            457899999999999888764       69999999854

>d1gqna_ c.1.10.1 (A:) Type I 3-dehydroquinate dehydratase {Salmonella typhi [TaxId: 90370]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Type I 3-dehydroquinate dehydratase
species: Salmonella typhi [TaxId: 90370]

Probab=84.59  E-value=4.9  Score=29.03  Aligned_cols=79  Identities=14%  Similarity=0.118  Sum_probs=49.5

Q ss_pred             CCHHHHHHHHh-------cCcEEEecCCCcc-----ch---hHHHHHHHHHcC-CCeeeCCCChHHHHHHHHHhHHHHHh
Q psy12849         40 INESSILIMAK-------KCRVILNCVGPYT-----WY---GEAVVKACIEAK-THHVDITGEPYFMEYMQYEYNTRAQE  103 (138)
Q Consensus        40 ~d~~~L~~~~~-------~~dvVIn~~GPf~-----~~---~~~v~~Aci~~g-~hYvDisge~~~~~~~~~~~~~~A~~  103 (138)
                      .+.+++.+.++       +.-+++.+--+..     ..   -..+.+.+++.| +.|||+=  ..+.......+-+.+++
T Consensus        56 ~~~~~l~~~~~~lr~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~~~~d~iDiE--l~~~~~~~~~li~~a~~  133 (252)
T d1gqna_          56 ASTQSVLTAARVIRDAMPDIPLLFTFRSAKEGGEQTITTQHYLTLNRAAIDSGLVDMIDLE--LFTGDADVKATVDYAHA  133 (252)
T ss_dssp             TCHHHHHHHHHHHHHHCTTSCEEEECCBGGGTCSBCCCHHHHHHHHHHHHHHSCCSEEEEE--GGGCHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhcCCCCEEEEEechhhCCCCCCCHHHHHHHHHHHHHcCCCceEecc--ccccHHHHHHHHHHhhc
Confidence            45666666655       3457877764421     11   126788999998 8999982  22222333355567888


Q ss_pred             CCCEEEeCCC-CccchHh
Q psy12849        104 SEVCVVSACG-IETLPID  120 (138)
Q Consensus       104 ~gv~iv~~~G-~d~~p~d  120 (138)
                      .|+.+|.+.= |+..|+.
T Consensus       134 ~~~~vI~S~Hdf~~TP~~  151 (252)
T d1gqna_         134 HNVYVVMSNHDFHQTPSA  151 (252)
T ss_dssp             TTCEEEEEEEESSCCCCH
T ss_pred             CCCeEEEEecCCCCCCCH
Confidence            8998777753 6777753

>d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: meso-2,3-butanediol dehydrogenase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=84.44  E-value=0.46  Score=34.34  Aligned_cols=32  Identities=16%  Similarity=0.250  Sum_probs=27.2

Q ss_pred             CCcceEEeeCCCHHHHHHHHhc-------CcEEEecCCC
Q psy12849         30 RTNRTTVVNTINESSILIMAKK-------CRVILNCVGP   61 (138)
Q Consensus        30 ~~~~~~~~D~~d~~~L~~~~~~-------~dvVIn~~GP   61 (138)
                      .++..+++|++|++++.++++.       .|++||++|-
T Consensus        50 ~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iDilVnnAG~   88 (255)
T d1gega_          50 GHAVAVKVDVSDRDQVFAAVEQARKTLGGFDVIVNNAGV   88 (255)
T ss_dssp             CCEEEEECCTTSHHHHHHHHHHHHHHTTCCCEEEECCCC
T ss_pred             CcEEEEEeeCCCHHHHHHHHHHHHHHhCCccEEEecccc
Confidence            4678899999999999888774       6999999973

>d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.27  E-value=0.41  Score=34.79  Aligned_cols=32  Identities=19%  Similarity=0.162  Sum_probs=27.3

Q ss_pred             CCcceEEeeCCCHHHHHHHHh-------cCcEEEecCCC
Q psy12849         30 RTNRTTVVNTINESSILIMAK-------KCRVILNCVGP   61 (138)
Q Consensus        30 ~~~~~~~~D~~d~~~L~~~~~-------~~dvVIn~~GP   61 (138)
                      .++.++++|++|.+++.++++       +.|++||.||=
T Consensus        53 ~~~~~~~~Dvs~~~sv~~~~~~~~~~~g~iDiLVnNAGi   91 (275)
T d1wmaa1          53 LSPRFHQLDIDDLQSIRALRDFLRKEYGGLDVLVNNAGI   91 (275)
T ss_dssp             CCCEEEECCTTCHHHHHHHHHHHHHHHSSEEEEEECCCC
T ss_pred             CcEEEEEEecCCHHHHHHHHHHHHHhcCCcEEEEEcCCc
Confidence            467899999999999887766       36999999984

>d1vm6a3 c.2.1.3 (A:1-96,A:183-214) Dihydrodipicolinate reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=83.98  E-value=0.37  Score=32.00  Aligned_cols=59  Identities=20%  Similarity=0.207  Sum_probs=38.1

Q ss_pred             HhcCcEEEecCCCccchhHHHHHHHHHcCCCeeeCCCChHHHHHHHHHhHHHHHhCCCEEEeCCC
Q psy12849         49 AKKCRVILNCVGPYTWYGEAVVKACIEAKTHHVDITGEPYFMEYMQYEYNTRAQESEVCVVSACG  113 (138)
Q Consensus        49 ~~~~dvVIn~~GPf~~~~~~v~~Aci~~g~hYvDisge~~~~~~~~~~~~~~A~~~gv~iv~~~G  113 (138)
                      +.++||||+-.-|-..  ...++.|++.|++.|  .|...|..+-...+.+.++  .+.++.+.=
T Consensus        39 ~~~~DVvIDFS~p~~~--~~~l~~~~~~~~p~V--iGTTG~~~~~~~~i~~~ak--~~pv~~a~N   97 (128)
T d1vm6a3          39 LDSPDVVIDFSSPEAL--PKTVDLCKKYRAGLV--LGTTALKEEHLQMLRELSK--EVPVVQAYS   97 (128)
T ss_dssp             CSCCSEEEECSCGGGH--HHHHHHHHHHTCEEE--ECCCSCCHHHHHHHHHHTT--TSEEEECSC
T ss_pred             hccCCEEEEecCHHHH--HHHHHHHHhcCCCEE--EEcCCCCHHHHHHHHHHHh--hCCEEeeec
Confidence            3578999999988665  478999999999985  3443443332334444443  455554433

>d1edoa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=83.85  E-value=0.46  Score=34.26  Aligned_cols=34  Identities=21%  Similarity=0.136  Sum_probs=28.9

Q ss_pred             CCcceEEeeCCCHHHHHHHHh-------cCcEEEecCCCcc
Q psy12849         30 RTNRTTVVNTINESSILIMAK-------KCRVILNCVGPYT   63 (138)
Q Consensus        30 ~~~~~~~~D~~d~~~L~~~~~-------~~dvVIn~~GPf~   63 (138)
                      .++.++++|+.|++++.++++       +.|++||++|.+.
T Consensus        51 ~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iDiLVnnAg~~~   91 (244)
T d1edoa_          51 GQAITFGGDVSKEADVEAMMKTAIDAWGTIDVVVNNAGITR   91 (244)
T ss_dssp             CEEEEEECCTTSHHHHHHHHHHHHHHSSCCSEEEECCCCCC
T ss_pred             CcEEEEeCCCCCHHHHHHHHHHHHHHcCCCCcccccccccc
Confidence            367789999999999988877       3699999999765

>d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: D(-)-3-hydroxybutyrate dehydrogenase
species: Pseudomonas fragi [TaxId: 296]

Probab=83.79  E-value=0.47  Score=34.36  Aligned_cols=33  Identities=6%  Similarity=0.006  Sum_probs=28.4

Q ss_pred             CCcceEEeeCCCHHHHHHHHhc-------CcEEEecCCCc
Q psy12849         30 RTNRTTVVNTINESSILIMAKK-------CRVILNCVGPY   62 (138)
Q Consensus        30 ~~~~~~~~D~~d~~~L~~~~~~-------~dvVIn~~GPf   62 (138)
                      .++.++++|++|++++.+++++       .|++||++|..
T Consensus        55 ~~~~~~~~Dv~~~~~v~~~~~~~~~~~G~iDiLVnnAG~~   94 (260)
T d1x1ta1          55 VKVLYDGADLSKGEAVRGLVDNAVRQMGRIDILVNNAGIQ   94 (260)
T ss_dssp             SCEEEECCCTTSHHHHHHHHHHHHHHHSCCSEEEECCCCC
T ss_pred             CcEEEEECCCCCHHHHHHHHHHHHHHhCCCcEEEeecccc
Confidence            4678899999999999998874       69999999864

>d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sorbitol dehydrogenase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=83.57  E-value=0.59  Score=33.83  Aligned_cols=34  Identities=9%  Similarity=0.171  Sum_probs=28.6

Q ss_pred             CCcceEEeeCCCHHHHHHHHhc-------CcEEEecCCCcc
Q psy12849         30 RTNRTTVVNTINESSILIMAKK-------CRVILNCVGPYT   63 (138)
Q Consensus        30 ~~~~~~~~D~~d~~~L~~~~~~-------~dvVIn~~GPf~   63 (138)
                      .+...+++|++|++++.++++.       .|++||++|.+.
T Consensus        51 ~~~~~~~~Dvt~~~~v~~~~~~~~~~~g~iDilVnnAg~~~   91 (256)
T d1k2wa_          51 PAACAIALDVTDQASIDRCVAELLDRWGSIDILVNNAALFD   91 (256)
T ss_dssp             TTEEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEECCCCCC
T ss_pred             CceEEEEeeCCCHHHHHHHHHHHHHHhCCccEEEeeccccc
Confidence            3677899999999999988874       699999999643

>d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-glucose-4,6-dehydratase
species: Yersinia pseudotuberculosis [TaxId: 633]

Probab=82.77  E-value=1.1  Score=32.77  Aligned_cols=52  Identities=4%  Similarity=0.029  Sum_probs=40.8

Q ss_pred             CCcceEEeeCCCHHHHHHHHhcC--cEEEecCCCccch----------------hHHHHHHHHHcCCCee
Q psy12849         30 RTNRTTVVNTINESSILIMAKKC--RVILNCVGPYTWY----------------GEAVVKACIEAKTHHV   81 (138)
Q Consensus        30 ~~~~~~~~D~~d~~~L~~~~~~~--dvVIn~~GPf~~~----------------~~~v~~Aci~~g~hYv   81 (138)
                      +.++.+.+|+.|++.+.++++++  ++|++++++....                ...++++|.+.+...+
T Consensus        56 ~~i~~~~~Dl~d~~~l~~~~~~~~~~~v~~~aa~~~~~~~~~~~~~~~~~Nv~g~~n~l~~~~~~~~~~~  125 (356)
T d1rkxa_          56 DGMQSEIGDIRDQNKLLESIREFQPEIVFHMAAQPLVRLSYSEPVETYSTNVMGTVYLLEAIRHVGGVKA  125 (356)
T ss_dssp             TTSEEEECCTTCHHHHHHHHHHHCCSEEEECCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHHCCCCE
T ss_pred             cCCeEEEeeccChHhhhhhhhhchhhhhhhhhccccccccccCCccccccccccchhhhhhhhccccccc
Confidence            46899999999999999999864  8999999864321                2467888988875553

>d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein F25D1.5
species: Caenorhabditis elegans [TaxId: 6239]

Probab=82.74  E-value=0.38  Score=35.26  Aligned_cols=33  Identities=12%  Similarity=0.144  Sum_probs=28.2

Q ss_pred             CCcceEEeeCCCHHHHHHHHhc-------CcEEEecCCCc
Q psy12849         30 RTNRTTVVNTINESSILIMAKK-------CRVILNCVGPY   62 (138)
Q Consensus        30 ~~~~~~~~D~~d~~~L~~~~~~-------~dvVIn~~GPf   62 (138)
                      .++.++++|++|++++.++++.       .|++||++|..
T Consensus        56 ~~~~~~~~Dv~~~~~v~~~~~~~~~~~G~iDilVnnAG~~   95 (274)
T d1xhla_          56 EKINAVVADVTEASGQDDIINTTLAKFGKIDILVNNAGAN   95 (274)
T ss_dssp             GGEEEEECCTTSHHHHHHHHHHHHHHHSCCCEEEECCCCC
T ss_pred             cceEEEEeeCCCHHHHHHHHHHHHHHcCCceEEEeecccc
Confidence            4678999999999999888874       59999999964

>d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Bacterial sepiapterin reductase
species: Chlorobium tepidum [TaxId: 1097]

Probab=82.36  E-value=0.52  Score=33.91  Aligned_cols=34  Identities=9%  Similarity=0.104  Sum_probs=28.1

Q ss_pred             CCcceEEeeCCCHHHHHHHHhc-------CcEEEecCCCcc
Q psy12849         30 RTNRTTVVNTINESSILIMAKK-------CRVILNCVGPYT   63 (138)
Q Consensus        30 ~~~~~~~~D~~d~~~L~~~~~~-------~dvVIn~~GPf~   63 (138)
                      .+..++++|++|++++.++++.       .|++||++|-+.
T Consensus        57 ~~~~~~~~Dvt~~~~v~~~~~~~~~~~g~iDilvnnAg~~~   97 (240)
T d2bd0a1          57 ALTDTITADISDMADVRRLTTHIVERYGHIDCLVNNAGVGR   97 (240)
T ss_dssp             CEEEEEECCTTSHHHHHHHHHHHHHHTSCCSEEEECCCCCC
T ss_pred             CcEEEEEecCCCHHHHHHHHHHHHHHcCCcceeeccccccc
Confidence            3567889999999998888773       699999998543

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

Probab=82.26  E-value=0.7  Score=33.45  Aligned_cols=33  Identities=15%  Similarity=0.220  Sum_probs=27.9

Q ss_pred             CCcceEEeeCCCHHHHHHHHhc-------CcEEEecCCCc
Q psy12849         30 RTNRTTVVNTINESSILIMAKK-------CRVILNCVGPY   62 (138)
Q Consensus        30 ~~~~~~~~D~~d~~~L~~~~~~-------~dvVIn~~GPf   62 (138)
                      .++..+++|+.|++++.++++.       .|++||++|..
T Consensus        54 ~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iDilVnnaG~~   93 (260)
T d1zema1          54 VEARSYVCDVTSEEAVIGTVDSVVRDFGKIDFLFNNAGYQ   93 (260)
T ss_dssp             SCEEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEECCCCC
T ss_pred             CcEEEEEccCCCHHHHHHHHHHHHHHhCCCCeehhhhccc
Confidence            3678899999999998888774       69999999854

>d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Probable oxidoreductase At4g09670
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=82.23  E-value=4  Score=27.26  Aligned_cols=71  Identities=6%  Similarity=-0.058  Sum_probs=46.2

Q ss_pred             HHHHH--hcCcEEEecCCCccchhHHHHHHHHHcCCCee-e--CCCChHHHHHHHHHhHHHHHhCCCEEEeCCCCccchH
Q psy12849         45 ILIMA--KKCRVILNCVGPYTWYGEAVVKACIEAKTHHV-D--ITGEPYFMEYMQYEYNTRAQESEVCVVSACGIETLPI  119 (138)
Q Consensus        45 L~~~~--~~~dvVIn~~GPf~~~~~~v~~Aci~~g~hYv-D--isge~~~~~~~~~~~~~~A~~~gv~iv~~~G~d~~p~  119 (138)
                      +.+++  .+.|+|+-|. |...+ ...+..|+++|.|.+ +  ++-+..-.    .++-+.++++|+.+..+.-+-.-|.
T Consensus        58 ~~~ll~~~~iD~v~I~t-p~~~h-~~~~~~~l~~g~~v~~EKP~~~~~~e~----~~l~~~~~~~~~~~~v~~~~r~~~~  131 (184)
T d1ydwa1          58 YESLLEDPEIDALYVPL-PTSLH-VEWAIKAAEKGKHILLEKPVAMNVTEF----DKIVDACEANGVQIMDGTMWVHPQE  131 (184)
T ss_dssp             HHHHHHCTTCCEEEECC-CGGGH-HHHHHHHHTTTCEEEECSSCSSSHHHH----HHHHHHHHTTTCCEEECCCGGGCHH
T ss_pred             HHHhhhccccceeeecc-cchhh-cchhhhhhhccceeecccccccCHHHH----HHHHHHHHhhCCEEEEEEeeecChH
Confidence            44444  3579999888 54555 378999999999964 3  23332222    2455778899999977766544554


Q ss_pred             hH
Q psy12849        120 DM  121 (138)
Q Consensus       120 dl  121 (138)
                      -.
T Consensus       132 ~~  133 (184)
T d1ydwa1         132 AC  133 (184)
T ss_dssp             HH
T ss_pred             HH
Confidence            33

>d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 15-hydroxyprostaglandin dehydrogenase, PGDH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.07  E-value=0.6  Score=33.68  Aligned_cols=35  Identities=6%  Similarity=0.080  Sum_probs=29.6

Q ss_pred             CCcceEEeeCCCHHHHHHHHh-------cCcEEEecCCCccc
Q psy12849         30 RTNRTTVVNTINESSILIMAK-------KCRVILNCVGPYTW   64 (138)
Q Consensus        30 ~~~~~~~~D~~d~~~L~~~~~-------~~dvVIn~~GPf~~   64 (138)
                      .++.++++|++|++++.++++       +.|++||++|.+..
T Consensus        54 ~~~~~~~~Dv~~~~~v~~~~~~~~~~~G~iDilVnnAg~~~~   95 (254)
T d2gdza1          54 QKTLFIQCDVADQQQLRDTFRKVVDHFGRLDILVNNAGVNNE   95 (254)
T ss_dssp             GGEEEEECCTTSHHHHHHHHHHHHHHHSCCCEEEECCCCCCS
T ss_pred             CcEEEEEeecCCHHHHHHHHHHHHHHcCCcCeeccccccccc
Confidence            467889999999999988886       46999999998654

>d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Retinal dehydrogenase/reductase 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.03  E-value=0.7  Score=33.47  Aligned_cols=33  Identities=9%  Similarity=0.151  Sum_probs=28.0

Q ss_pred             CCcceEEeeCCCHHHHHHHHhc-------CcEEEecCCCc
Q psy12849         30 RTNRTTVVNTINESSILIMAKK-------CRVILNCVGPY   62 (138)
Q Consensus        30 ~~~~~~~~D~~d~~~L~~~~~~-------~dvVIn~~GPf   62 (138)
                      .+..++++|++|++++.++++.       .|++||++|.+
T Consensus        51 ~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~iDilVnnAG~~   90 (250)
T d1ydea1          51 PGAVFILCDVTQEDDVKTLVSETIRRFGRLDCVVNNAGHH   90 (250)
T ss_dssp             TTEEEEECCTTSHHHHHHHHHHHHHHHSCCCEEEECCCCC
T ss_pred             CCCeEEEccCCCHHHHHHHHHHHHHhcCCCCEEEeccccc
Confidence            3567899999999999988874       69999999954

>d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein R05D8.7
species: Caenorhabditis elegans [TaxId: 6239]

Probab=81.31  E-value=0.65  Score=33.81  Aligned_cols=34  Identities=15%  Similarity=0.198  Sum_probs=28.8

Q ss_pred             CCcceEEeeCCCHHHHHHHHhc-------CcEEEecCCCcc
Q psy12849         30 RTNRTTVVNTINESSILIMAKK-------CRVILNCVGPYT   63 (138)
Q Consensus        30 ~~~~~~~~D~~d~~~L~~~~~~-------~dvVIn~~GPf~   63 (138)
                      .++.++++|++|++++.++++.       .|++||++|.+.
T Consensus        57 ~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~iDilvnnAG~~~   97 (272)
T d1xkqa_          57 KQVNSVVADVTTEDGQDQIINSTLKQFGKIDVLVNNAGAAI   97 (272)
T ss_dssp             GGEEEEECCTTSHHHHHHHHHHHHHHHSCCCEEEECCCCCC
T ss_pred             CceEEEEccCCCHHHHHHHHHHHHHHhCCceEEEeCCcccC
Confidence            4678899999999999888873       699999999653

>d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase
species: Bacillus megaterium [TaxId: 1404]

Probab=81.29  E-value=0.59  Score=34.08  Aligned_cols=33  Identities=18%  Similarity=0.207  Sum_probs=28.0

Q ss_pred             CcceEEeeCCCHHHHHHHHh-------cCcEEEecCCCcc
Q psy12849         31 TNRTTVVNTINESSILIMAK-------KCRVILNCVGPYT   63 (138)
Q Consensus        31 ~~~~~~~D~~d~~~L~~~~~-------~~dvVIn~~GPf~   63 (138)
                      ++..+++|++|++++.++++       +.|++||++|-..
T Consensus        58 ~~~~~~~Dvt~~~~v~~~~~~~~~~~G~iDiLVnnAG~~~   97 (261)
T d1geea_          58 EAIAVKGDVTVESDVINLVQSAIKEFGKLDVMINNAGLEN   97 (261)
T ss_dssp             EEEEEECCTTSHHHHHHHHHHHHHHHSCCCEEEECCCCCC
T ss_pred             cEEEEEccCCCHHHHHHHHHHHHHHhCCCCEeeccceecC
Confidence            56789999999999988887       4699999998643

>d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Escherichia coli [TaxId: 562]

Probab=81.07  E-value=0.71  Score=33.21  Aligned_cols=33  Identities=15%  Similarity=0.268  Sum_probs=27.8

Q ss_pred             CcceEEeeCCCHHHHHHHHh-------cCcEEEecCCCcc
Q psy12849         31 TNRTTVVNTINESSILIMAK-------KCRVILNCVGPYT   63 (138)
Q Consensus        31 ~~~~~~~D~~d~~~L~~~~~-------~~dvVIn~~GPf~   63 (138)
                      +...+++|++|++++.++++       +.|++||++|.+.
T Consensus        51 ~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iDilVnnAg~~~   90 (243)
T d1q7ba_          51 NGKGLMLNVTDPASIESVLEKIRAEFGEVDILVNNAGITR   90 (243)
T ss_dssp             GEEEEECCTTCHHHHHHHHHHHHHHTCSCSEEEECCCCCC
T ss_pred             CCcEEEEEecCHHHhhhhhhhhhcccCCcceehhhhhhcc
Confidence            56788999999999988887       4799999998654

>d1kewa_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptococcus suis, serotype 2 [TaxId: 1307]

Probab=81.06  E-value=0.71  Score=34.62  Aligned_cols=49  Identities=4%  Similarity=-0.027  Sum_probs=38.4

Q ss_pred             CCcceEEeeCCCHHHHHHHHhc--CcEEEecCCCccch----------------hHHHHHHHHHcCC
Q psy12849         30 RTNRTTVVNTINESSILIMAKK--CRVILNCVGPYTWY----------------GEAVVKACIEAKT   78 (138)
Q Consensus        30 ~~~~~~~~D~~d~~~L~~~~~~--~dvVIn~~GPf~~~----------------~~~v~~Aci~~g~   78 (138)
                      .+++++..|+.|+..+.+++++  +|+|+|||++....                -..++++|.+.|+
T Consensus        50 ~~~~~~~~Dl~d~~~l~~~~~~~~~d~VihlAa~~~~~~~~~~p~~~~~~N~~gt~nl~~~~~~~~~  116 (361)
T d1kewa_          50 NRYNFEHADICDSAEITRIFEQYQPDAVMHLAAESHVDRSITGPAAFIETNIVGTYALLEVARKYWS  116 (361)
T ss_dssp             TTEEEEECCTTCHHHHHHHHHHHCCSEEEECCSCCCHHHHHHCTHHHHHHHTHHHHHHHHHHHHHHH
T ss_pred             CCcEEEEccCCCHHHHHHHHHhCCCCEEEECccccchhhHHhCHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            5788999999999999999985  79999999764311                1257888988653

>d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 7-alpha-hydroxysteroid dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=81.00  E-value=0.77  Score=33.24  Aligned_cols=33  Identities=15%  Similarity=0.192  Sum_probs=27.6

Q ss_pred             CCcceEEeeCCCHHHHHHHHh-------cCcEEEecCCCc
Q psy12849         30 RTNRTTVVNTINESSILIMAK-------KCRVILNCVGPY   62 (138)
Q Consensus        30 ~~~~~~~~D~~d~~~L~~~~~-------~~dvVIn~~GPf   62 (138)
                      .++.++++|++|++++.++++       +.|++||++|-+
T Consensus        60 ~~~~~~~~Dvs~~~~~~~~~~~~~~~~g~iDilvnnAG~~   99 (255)
T d1fmca_          60 GQAFACRCDITSEQELSALADFAISKLGKVDILVNNAGGG   99 (255)
T ss_dssp             CCEEEEECCTTCHHHHHHHHHHHHHHHSSCCEEEECCCCC
T ss_pred             CcEEEEEccCCCHHHHHHHHHHHHHHcCCCCEeeeCCcCC
Confidence            467889999999999888776       479999999843

>d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Mannitol dehydrogenase
species: Mushroom (Agaricus bisporus) [TaxId: 5341]

Probab=80.98  E-value=0.51  Score=34.16  Aligned_cols=33  Identities=6%  Similarity=0.027  Sum_probs=27.8

Q ss_pred             CCcceEEeeCCCHHHHHHHHh-------cCcEEEecCCCc
Q psy12849         30 RTNRTTVVNTINESSILIMAK-------KCRVILNCVGPY   62 (138)
Q Consensus        30 ~~~~~~~~D~~d~~~L~~~~~-------~~dvVIn~~GPf   62 (138)
                      .++.++++|++|++++.++++       +.|++||++|-.
T Consensus        59 ~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iDilVnnAg~~   98 (260)
T d1h5qa_          59 VKTKAYQCDVSNTDIVTKTIQQIDADLGPISGLIANAGVS   98 (260)
T ss_dssp             CCEEEEECCTTCHHHHHHHHHHHHHHSCSEEEEEECCCCC
T ss_pred             CceEEEEccCCCHHHHHHHHHHHHHHhCCCcEeccccccc
Confidence            467889999999999988886       469999999743

>d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase
species: Streptomyces hydrogenans [TaxId: 1905]

Probab=80.94  E-value=0.65  Score=33.77  Aligned_cols=34  Identities=15%  Similarity=0.091  Sum_probs=28.6

Q ss_pred             CCcceEEeeCCCHHHHHHHHh-------cCcEEEecCCCcc
Q psy12849         30 RTNRTTVVNTINESSILIMAK-------KCRVILNCVGPYT   63 (138)
Q Consensus        30 ~~~~~~~~D~~d~~~L~~~~~-------~~dvVIn~~GPf~   63 (138)
                      .++.++++|++|++++.++++       +.|++||++|...
T Consensus        51 ~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iDilVnnAg~~~   91 (254)
T d1hdca_          51 DAARYQHLDVTIEEDWQRVVAYAREEFGSVDGLVNNAGIST   91 (254)
T ss_dssp             GGEEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEECCCCCC
T ss_pred             CceEEEEcccCCHHHHHHHHHHHHHHcCCccEEEecCcccc
Confidence            357889999999999988886       4699999998654

>d1u8xx1 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Maltose-6'-phosphate glucosidase GlvA
species: Bacillus subtilis [TaxId: 1423]

Probab=80.79  E-value=5.2  Score=27.15  Aligned_cols=83  Identities=5%  Similarity=-0.125  Sum_probs=51.1

Q ss_pred             HHHHHhcCcEEEecCCCccchhH-HHHHHHHHcCCCeeeCCCChHHHH-----HHHHHhHHHHHh-C-CCEEEeCCCCcc
Q psy12849         45 ILIMAKKCRVILNCVGPYTWYGE-AVVKACIEAKTHHVDITGEPYFME-----YMQYEYNTRAQE-S-EVCVVSACGIET  116 (138)
Q Consensus        45 L~~~~~~~dvVIn~~GPf~~~~~-~v~~Aci~~g~hYvDisge~~~~~-----~~~~~~~~~A~~-~-gv~iv~~~G~d~  116 (138)
                      ..+.++++|+||+++|+-...|+ +--+...++|.--=|.+|...+.+     .+..+.-+..++ + ...++.-    +
T Consensus        71 ~~eal~~AD~Vvitag~~~~~g~~rd~~i~~~~Gi~~~~t~g~gg~~~~~r~i~ii~~i~~~i~~~~P~A~li~~----T  146 (167)
T d1u8xx1          71 PEEAFTDVDFVMAHIRVGKYAMRALDEQIPLKYGVVGQETCGPGGIAYGMRSIGGVLEILDYMEKYSPDAWMLNY----S  146 (167)
T ss_dssp             HHHHHSSCSEEEECCCTTHHHHHHHHHHHHHTTTCCCCSSSHHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEC----C
T ss_pred             hhhccCCCCEEEECCCcCCCCceeHHHhhchhcCceeeccccCcchheehhhHHHHHHHHHHHHhhCCCeEEEEe----C
Confidence            45678899999999999777663 555667778875555555433321     111122222222 1 3344442    5


Q ss_pred             chHhHHHHHHHHHhh
Q psy12849        117 LPIDMGVLMLQDSFE  131 (138)
Q Consensus       117 ~p~dl~~~~~~~~~~  131 (138)
                      =|.|++++.+.+.++
T Consensus       147 NPvdv~t~~~~k~~P  161 (167)
T d1u8xx1         147 NPAAIVAEATRRLRP  161 (167)
T ss_dssp             SCHHHHHHHHHHHST
T ss_pred             CHHHHHHHHHHHHCC
Confidence            799999999888763

>d1diha1 c.2.1.3 (A:2-130,A:241-273) Dihydrodipicolinate reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Escherichia coli [TaxId: 562]

Probab=80.77  E-value=0.36  Score=33.31  Aligned_cols=64  Identities=14%  Similarity=0.092  Sum_probs=41.9

Q ss_pred             HHHHHhcCcEEEecCCCccchhHHHHHHHHHcCCCeee-CCCChHHHHHHHHHhHHHHHhCCCEEEeCCCCc
Q psy12849         45 ILIMAKKCRVILNCVGPYTWYGEAVVKACIEAKTHHVD-ITGEPYFMEYMQYEYNTRAQESEVCVVSACGIE  115 (138)
Q Consensus        45 L~~~~~~~dvVIn~~GPf~~~~~~v~~Aci~~g~hYvD-isge~~~~~~~~~~~~~~A~~~gv~iv~~~G~d  115 (138)
                      +..+++.+||+|.-.-|-..  ...++.|.+.|+++|= .||-.+-  + ...+.+.++  .+.++.+.-|.
T Consensus        65 ~~~~~~~~DViIDFs~p~~~--~~~~~~a~~~~~~~ViGTTG~~~~--~-~~~i~~~a~--~ipi~~apN~S  129 (162)
T d1diha1          65 LDAVKDDFDVFIDFTRPEGT--LNHLAFCRQHGKGMVIGTTGFDEA--G-KQAIRDAAA--DIAIVFAANFS  129 (162)
T ss_dssp             STTTTTSCSEEEECSCHHHH--HHHHHHHHHTTCEEEECCCCCCHH--H-HHHHHHHTT--TSCEEECSCCC
T ss_pred             HHHHhcccceEEEeccHHHH--HHHHHHHHhccceeEEecCCCcHH--H-HHHHHHHcC--CCCEEEEcccc
Confidence            44567889999999988543  5789999999999964 5664322  1 124444444  45555555553

>d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=80.34  E-value=0.93  Score=32.62  Aligned_cols=34  Identities=9%  Similarity=0.085  Sum_probs=29.0

Q ss_pred             CCcceEEeeCCCHHHHHHHHh-------cCcEEEecCCCcc
Q psy12849         30 RTNRTTVVNTINESSILIMAK-------KCRVILNCVGPYT   63 (138)
Q Consensus        30 ~~~~~~~~D~~d~~~L~~~~~-------~~dvVIn~~GPf~   63 (138)
                      .++.++++|++|++++.++++       +.|++||++|...
T Consensus        59 ~~~~~~~~Dvt~~~~v~~~~~~~~~~~g~iDilvnnag~~~   99 (251)
T d2c07a1          59 YESSGYAGDVSKKEEISEVINKILTEHKNVDILVNNAGITR   99 (251)
T ss_dssp             CCEEEEECCTTCHHHHHHHHHHHHHHCSCCCEEEECCCCCC
T ss_pred             CcEEEEEccCCCHHHHHHHHHHHHHhcCCceeeeecccccc
Confidence            367889999999999998887       4699999998654

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.10  E-value=0.86  Score=32.87  Aligned_cols=34  Identities=26%  Similarity=0.277  Sum_probs=28.8

Q ss_pred             CCcceEEeeCCCHHHHHHHHh-------cCcEEEecCCCcc
Q psy12849         30 RTNRTTVVNTINESSILIMAK-------KCRVILNCVGPYT   63 (138)
Q Consensus        30 ~~~~~~~~D~~d~~~L~~~~~-------~~dvVIn~~GPf~   63 (138)
                      .++..+.+|++|++++.++++       ..|++||++|-..
T Consensus        56 ~~~~~~~~Dvs~~~~v~~~~~~i~~~~g~idilinnag~~~   96 (244)
T d1yb1a_          56 AKVHTFVVDCSNREDIYSSAKKVKAEIGDVSILVNNAGVVY   96 (244)
T ss_dssp             CCEEEEECCTTCHHHHHHHHHHHHHHTCCCSEEEECCCCCC
T ss_pred             CcEEEEEeeCCCHHHHHHHHHHHHHHcCCCceeEeeccccc
Confidence            467899999999999998876       3799999998654

>d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase (5l265)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=80.05  E-value=0.69  Score=33.46  Aligned_cols=33  Identities=12%  Similarity=0.205  Sum_probs=27.4

Q ss_pred             CCcceEEeeCCCHHHHHHHHh-------cCcEEEecCCCc
Q psy12849         30 RTNRTTVVNTINESSILIMAK-------KCRVILNCVGPY   62 (138)
Q Consensus        30 ~~~~~~~~D~~d~~~L~~~~~-------~~dvVIn~~GPf   62 (138)
                      .++..+++|++|++++.++++       +.|++||++|.+
T Consensus        57 ~~~~~~~~Dvt~~~~v~~~~~~~~~~~g~iDilvnnAG~~   96 (264)
T d1spxa_          57 QNVNSVVADVTTDAGQDEILSTTLGKFGKLDILVNNAGAA   96 (264)
T ss_dssp             GGEEEEECCTTSHHHHHHHHHHHHHHHSCCCEEEECCC--
T ss_pred             CceEEEEccCCCHHHHHHHHHHHHHHhCCCCEeecccccc
Confidence            457889999999999998887       469999999954