Psyllid ID: psy12891

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------
Protein Sequence
MLQQNSGKLRETPLHIAARVKDGDRCALMLLKSGAGPNLTNIAARVKDGDRCALMLLKSGAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVVDLLIQFVQNISQEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGADVSLQTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVSSGKSLKHSVMSFRLPPHNIIPNGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVRLLLNSAGVQVDAQTQEN
Secondary Structure (PSIPRED)
ccccccccccccHHHHHHHcccHHHHHHHHHHccccccHHHHHHHHcccHHHHHHHHHcccccccccccccHHHHHHHHcccHHHHHHHHHcccccccccccccHHHHHHHHHccHHHHHHHHHcccccccHHHHHcccccccccccHHHHHHHcccccccHHcccccHHHHHHHHHcccccccccccccccHHHHHHHHccHHHHHHHHHccccccHHHHHcccccccccHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHcccHHHHccccccccccccccHHHHHHHHcHHHHcccccccccccccccHHHHHHHHccHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHHcccccccccccccHHHHHHHHcccHHHHHHHHccccccccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccccHHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccccccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccHHHHHHHcccHHHHHHHHHHccccccHHHHHHHcccHHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccccccccccccccHHHHHHHccccHHHHHHHHccHHHHHHHHHcccccccccccccccHHHHHHHcccHHHHHHHHHcccccHHcccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccccHHHHHHHHHcccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccccccHHHHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHHccHHHHHHHHHHcccccccccccccHHHHHHHHccHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccccccccccccccccccHHHHHHHHccHHHHHHHHHccccccccccccc
Coil and Loop (DISEMBL)
mlqqnsgklretplhIAARVKDGDRCALMLLksgagpnltNIAARVKDGDRCALMLLksgagpnlttddgqtpvHAAAKYGNLVTLQLLLedggdpmyknkigetplhlasrNCKAEVVDLLIQFVQNISQEKVLEYVNSVNEDGASALHYACQVTkaelipitskeDQKTVKLLLEAGadvslqtkqNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNkqtsigwtplLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGylkvssgkslkhsvmsfrlpphniipngflvhDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLgasidatddqgqkpihvaaQNNFPEVAQIFLRahpslvtattkdgntcAHIAAMQGSVGVIEELMKFDRSGVIsarnrvteatplqlaaegghANVVRVLVKAGasctdenktgFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLGVTALHVAAYFGQADTVRELLshvpgtvksdpptgasflgelgsesgmtplhlaaysGNENVVRLLLNSagvqvdaqtqen
Flexible Loop (DISEMBL)
mlqqnsgklretplhiaarvkDGDRCALMLLksgagpnltNIAARVKDGDRCALMLLKSGAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVVDLLIQFVQNISQEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGADVSLQTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVSSGKSLKHSVMSFRLPPHNIIPNGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPlqlaaegghaNVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLGVTALHVAAYFGQADTVRELLSHvpgtvksdppTGASFLGELGSESGMTPLHLAAYSGNENVVRLLLNSagvqvdaqtqen
Low Complexity Region (SEG)
MLQQNSGKLRETPLHIAARVKDGDRCALMLLKSGAGPNLTNIAARVKDGDRCALMLLKSGAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVVDLLIQFVQNISQEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGADVSLQTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVSSGKSLKHSVMSFRLPPHNIIPNGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVRLLLNSAGVQVDAQTQEN
Disordered region (IsUnstruct)
**************HIAARVKDGDRCALMLLKSGAGPNLTNIAARVKDGDRCALMLLKSGAGPNLTT**GQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVVDLLIQFVQNISQEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGADVSLQTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVSSGKSLKHSVMSFRLPPHNIIPNGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEE***SKALNVYSKKLGVTALHVAAYFGQADTVRELLSHV*************************PLHLAAYSGNENVVRLLLNSAG**********
Disordered Region (DISOPRED)
MLQQNSGKLRETPLHIAARVKDGDRCALMLLKSGAGPNLTNIAARVKDGDRCALMLLKSGAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVVDLLIQFVQNISQEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGADVSLQTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVSSGKSLKHSVMSFRLPPHNIIPNGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVRLLLNSAGVQVD******
Disordered Region (DISEMBL)
********LRETPLHIAARVKDGDRCALMLLKSGAGPNLTNIAARVKDGDRCALMLLKSGAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVVDLLIQFVQNISQEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGADVSLQTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVSSGKSLKHSVMSFRLPPHNIIPNGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVRLLLNSAGVQVDAQTQEN
Disordered Region (DISPRO)
*L***SGKLRETPLHIAARVKDGDRCALMLLKSGAGPNLTNIAARVKDGDRCALMLLKSGAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVVDLLIQFVQNISQEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGADVSLQTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVSSGKSLKHSVMSFRLPPHNIIPNGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVRLLLNSA***********
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLQQNSGKLRETPLHIAARVKDGDRCALMLLKSGAGPNLTNIAARVKDGDRCALMLLKSGAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVVDLLIQFVQNISQEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGADVSLQTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVSSGKSLKHSVMSFRLPPHNIIPNGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVRLLLNSAGVQVDAQTQEN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	567	2.2.26 [Sep-21-2011]
P16157	1881	Ankyrin-1 OS=Homo sapiens	yes	N/A	0.899	0.271	0.309	2e-47
Q02357	1862	Ankyrin-1 OS=Mus musculus	yes	N/A	0.892	0.271	0.303	6e-46
Q01484	3957	Ankyrin-2 OS=Homo sapiens	no	N/A	0.834	0.119	0.301	2e-44
Q8C8R3	3898	Ankyrin-2 OS=Mus musculus	no	N/A	0.834	0.121	0.305	4e-44
Q12955	4377	Ankyrin-3 OS=Homo sapiens	no	N/A	0.895	0.116	0.297	1e-42
G5E8K5	1961	Ankyrin-3 OS=Mus musculus	no	N/A	0.911	0.263	0.289	2e-40
B2RXR6	993	Serine/threonine-protein	no	N/A	0.915	0.522	0.285	4e-37
Q54KA7	986	Ankyrin repeat, PH and SE	yes	N/A	0.791	0.455	0.286	6e-36
Q5F478	990	Serine/threonine-protein	no	N/A	0.922	0.528	0.283	6e-36
Q4UMH6	1179	Putative ankyrin repeat p	yes	N/A	0.841	0.404	0.293	6e-36

>sp|P16157|ANK1_HUMAN Ankyrin-1 OS=Homo sapiens GN=ANK1 PE=1 SV=3

 Score =  191 bits (484), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 179/579 (30%), Positives = 277/579 (47%), Gaps = 69/579 (11%)

Query: 7   GKLRETPLHIAARVKDGDRCALMLLKSGAGPNLTN--------IAARVKDGDRCALMLLK 58
           GK+R   LHIAAR  D  R A +LL++   P++ +        IAA  ++ +  A +LL 
Sbjct: 170 GKVRLPALHIAAR-NDDTRTAAVLLQNDPNPDVLSKTGFTPLHIAAHYENLN-VAQLLLN 227

Query: 59  SGAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEV 118
            GA  N T  +G TP+H A++ GN++ ++LLL+ G     K K   TPLH A+RN    +
Sbjct: 228 RGASVNFTPQNGITPLHIASRRGNVIMVRLLLDRGAQIETKTKDELTPLHCAARNGHVRI 287

Query: 119 VDLLIQFVQNISQEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEA 178
            ++L+     I  +          ++G S +H A Q            +    V+LLL+ 
Sbjct: 288 SEILLDHGAPIQAK---------TKNGLSPIHMAAQ-----------GDHLDCVRLLLQY 327

Query: 179 GADVSLQTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIACN 238
            A++   T  +H T  H  A  G++ V   +L++ +    S+ALN     G+TPL IAC 
Sbjct: 328 DAEIDDIT-LDHLTPLHVAAHCGHHRVAKVLLDKGAKPN-SRALN-----GFTPLHIACK 380

Query: 239 RGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKV-----SSGKSLKHSVMSFRLP 293
           + H+ ++  +L   A +D   + G + LH+A+  G+L +       G S   S +    P
Sbjct: 381 KNHVRVMELLLKTGASIDAVTESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETP 440

Query: 294 PHNIIPNG------FLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDAT 347
            H     G      +L+ + A V +      QTPLH AA  G   + KLLL+  A+ +  
Sbjct: 441 LHMAARAGHTEVAKYLLQNKAKV-NAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLA 499

Query: 348 DDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIEELMKF 407
              G  P+H+AA+    E     L    S     TK G T  H+AA  G V V E L++ 
Sbjct: 500 TTAGHTPLHIAAREGHVETVLALLEKEASQA-CMTKKGFTPLHVAAKYGKVRVAELLLER 558

Query: 408 DRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHN 467
           D     + +N +   TPL +A    + ++V++L+  G S       G+T +H+AA+    
Sbjct: 559 DAHPNAAGKNGL---TPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQV 615

Query: 468 QVLEE-MRSSKALNVYSKKLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLG 526
           +V    ++   + N  S + GVT LH+AA  G A+ V  LLS                 G
Sbjct: 616 EVARSLLQYGGSANAESVQ-GVTPLHLAAQEGHAEMVALLLSKQAN-------------G 661

Query: 527 ELGSESGMTPLHLAAYSGNENVVRLLLNSAGVQVDAQTQ 565
            LG++SG+TPLHL A  G+  V  +L+   GV VDA T+
Sbjct: 662 NLGNKSGLTPLHLVAQEGHVPVADVLIKH-GVMVDATTR 699

Isoform Mu17 together with obscurin in skeletal muscle may provide a molecular link between the sarcoplasmic reticulum and myofibrils.
Homo sapiens (taxid: 9606)

>sp|Q02357|ANK1_MOUSE Ankyrin-1 OS=Mus musculus GN=Ank1 PE=1 SV=2

 Score =  186 bits (471), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 177/583 (30%), Positives = 273/583 (46%), Gaps = 77/583 (13%)

Query: 7   GKLRETPLHIAARVKDGDRCALMLLKSGAGPNLTN--------IAARVKDGDRCALMLLK 58
           GK+R   LHIAAR  D  R A +LL++   P++ +        IAA  ++ +  A +LL 
Sbjct: 166 GKVRLPALHIAAR-NDDTRTAAVLLQNDPNPDVLSKTGFTPLHIAAHYENLN-VAQLLLN 223

Query: 59  SGAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEV 118
            GA  N T  +G TP+H A++ GN++ ++LLL+ G     + K   TPLH A+RN    +
Sbjct: 224 RGASVNFTPQNGITPLHIASRRGNVIMVRLLLDRGAQIETRTKDELTPLHCAARNGHVRI 283

Query: 119 VDLLIQFVQNISQEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEA 178
            ++L+     I  +          ++G S +H A Q            +    V+LLL+ 
Sbjct: 284 SEILLDHGAPIQAK---------TKNGLSPIHMAAQ-----------GDHLDCVRLLLQY 323

Query: 179 GADVSLQTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIACN 238
            A++   T  +H T  H  A  G++ V   +L++ +    S+ALN     G+TPL IAC 
Sbjct: 324 NAEIDDIT-LDHLTPLHVAAHCGHHRVAKVLLDKGAKPN-SRALN-----GFTPLHIACK 376

Query: 239 RGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKV-----SSGKSLKHSVMSFRLP 293
           + H+ ++  +L   A +D   + G + LH+A+  G+L +       G S   S +    P
Sbjct: 377 KNHIRVMELLLKTGASIDAVTESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETP 436

Query: 294 PHNIIPNGFLVHDHAAVIDIL----------TLRKQTPLHLAAEAGQLQVCKLLLDLGAS 343
            H     G     H  V   L              QTPLH AA  G   + KLLL+ GAS
Sbjct: 437 LHMAARAG-----HTEVAKYLLQNKAKANAKAKDDQTPLHCAARIGHTGMVKLLLENGAS 491

Query: 344 IDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIEE 403
            +     G  P+H AA+    + A   L    S     TK G T  H+AA  G V + E 
Sbjct: 492 PNLATTAGHTPLHTAAREGHVDTALALLEKEASQA-CMTKKGFTPLHVAAKYGKVRLAEL 550

Query: 404 LMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQ 463
           L++ D     + +N +   TPL +A    + ++V++L+  G S       G+T +H+AA+
Sbjct: 551 LLEHDAHPNAAGKNGL---TPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAK 607

Query: 464 NGHNQVLEE-MRSSKALNVYSKKLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGA 522
               +V    ++   + N  S + GVT LH+AA  G  + V  LLS              
Sbjct: 608 QNQIEVARSLLQYGGSANAESVQ-GVTPLHLAAQEGHTEMVALLLSKQAN---------- 656

Query: 523 SFLGELGSESGMTPLHLAAYSGNENVVRLLLNSAGVQVDAQTQ 565
              G LG++SG+TPLHL +  G+  V  +L+   GV VDA T+
Sbjct: 657 ---GNLGNKSGLTPLHLVSQEGHVPVADVLIKH-GVTVDATTR 695

Attaches integral membrane proteins to cytoskeletal elements; binds to the erythrocyte membrane protein band 4.2, to Na-K ATPase, to the lymphocyte membrane protein GP85, and to the cytoskeletal proteins fodrin, tubulin, vimentin and desmin. Erythrocyte ankyrins also link spectrin (beta chain) to the cytoplasmic domain of the erythrocytes anion exchange protein; they retain most or all of these binding functions. In skeletal muscle, isoform Mu7 together with obscurin may provide a molecular link between the sarcoplasmic reticulum and myofibrils.

Mus musculus (taxid: 10090)

>sp|Q01484|ANK2_HUMAN Ankyrin-2 OS=Homo sapiens GN=ANK2 PE=1 SV=4

 Score =  180 bits (457), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 172/570 (30%), Positives = 276/570 (48%), Gaps = 97/570 (17%)

Query: 7   GKLRETPLHIAARVKDGDRCALML-----------------LKSGAGPNLTNIAARVKDG 49
           GK+R   LHIAAR  D    AL+L                  +SG  P   +IAA   + 
Sbjct: 189 GKVRLPALHIAARKDDTKSAALLLQNDHNADVQSKMMVNRTTESGFTP--LHIAAHYGNV 246

Query: 50  DRCALMLLKSGAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHL 109
           +  A +LL  GA  + T  +G TP+H A+K GN   ++LLL+ GG    K + G TPLH 
Sbjct: 247 N-VATLLLNRGAAVDFTARNGITPLHVASKRGNTNMVKLLLDRGGQIDAKTRDGLTPLHC 305

Query: 110 ASRNCKAEVVDLLIQFVQNISQEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQ 169
           A+R+   +VV+LL++    +          +  ++G S LH A Q    E          
Sbjct: 306 AARSGHDQVVELLLERGAPLL---------ARTKNGLSPLHMAAQGDHVEC--------- 347

Query: 170 KTVKLLLEAGA---DVSLQTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQT 226
             VK LL+  A   DV+L    ++ TA H  A  G+  V   +L++ +    ++ALN   
Sbjct: 348 --VKHLLQHKAPVDDVTL----DYLTALHVAAHCGHYRVTKLLLDKRANPN-ARALN--- 397

Query: 227 SIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVSSGKSLKHS 286
             G+TPL IAC +  ++++  ++   A +    + G + +H+AA  G+L           
Sbjct: 398 --GFTPLHIACKKNRIKVMELLVKYGASIQAITESGLTPIHVAAFMGHL----------- 444

Query: 287 VMSFRLPPHNIIPNGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDA 346
                    NI+    L+  + A  D+  +R +T LH+AA AGQ++V + LL  GA +DA
Sbjct: 445 ---------NIV---LLLLQNGASPDVTNIRGETALHMAARAGQVEVVRCLLRNGALVDA 492

Query: 347 TDDQGQKPIHVAAQNNFPEVAQIFLR--AHPSLVTATTKDGNTCAHIAAMQGSVGVIEEL 404
              + Q P+H+A++    E+ Q+ L+  AHP    A T +G T  HI+A +G V V   L
Sbjct: 493 RAREEQTPLHIASRLGKTEIVQLLLQHMAHPD---AATTNGYTPLHISAREGQVDVASVL 549

Query: 405 MKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQN 464
           ++   +  ++ +      TPL +AA+ G  +V ++L++  A+     K G T +H+AA  
Sbjct: 550 LEAGAAHSLATKKGF---TPLHVAAKYGSLDVAKLLLQRRAAADSAGKNGLTPLHVAAHY 606

Query: 465 GHNQVLEEMRSSKALNVYSKKLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASF 524
            + +V   +    A    + K G T LH+AA   Q      LL++           GA  
Sbjct: 607 DNQKVALLLLEKGASPHATAKNGYTPLHIAAKKNQMQIASTLLNY-----------GAE- 654

Query: 525 LGELGSESGMTPLHLAAYSGNENVVRLLLN 554
              + ++ G+TPLHLA+  G+ ++V LLL+
Sbjct: 655 -TNIVTKQGVTPLHLASQEGHTDMVTLLLD 683

Attaches integral membrane proteins to cytoskeletal elements. Also binds to cytoskeletal proteins. Required for coordinate assembly of Na/Ca exchanger, Na/K ATPase and InsP3 receptor at sarcoplasmic reticulum sites in cardiomyocytes. Required for the coordinated expression of the Na/K ATPase, Na/Ca exchanger and beta-2-spectrin (SPTBN1) in the inner segment of rod photoreceptors. Required for expression and targeting of SPTBN1 in neonatal cardiomyocytes and for the regulation of neonatal cardiomyocyte contraction rate.

Homo sapiens (taxid: 9606)

>sp|Q8C8R3|ANK2_MOUSE Ankyrin-2 OS=Mus musculus GN=Ank2 PE=1 SV=2

 Score =  179 bits (455), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 174/570 (30%), Positives = 274/570 (48%), Gaps = 97/570 (17%)

Query: 7   GKLRETPLHIAARVKDGDRCALML-----------------LKSGAGPNLTNIAARVKDG 49
           GK+R   LHIAAR  D    AL+L                  +SG  P   +IAA   + 
Sbjct: 189 GKVRLPALHIAARKDDTKSAALLLQNDHNADVQSKMMVNRTTESGFTP--LHIAAHYGNV 246

Query: 50  DRCALMLLKSGAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHL 109
           +  A +LL  GA  + T  +G TP+H A+K GN   ++LLL+ GG    K + G TPLH 
Sbjct: 247 N-VATLLLNRGAAVDFTARNGITPLHVASKRGNTNMVKLLLDRGGQIDAKTRDGLTPLHC 305

Query: 110 ASRNCKAEVVDLLIQFVQNISQEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQ 169
           A+R+   +VV+LL+       + K      + N  G S LH A Q    E          
Sbjct: 306 AARSGHDQVVELLL-------ERKAPLLARTKN--GLSPLHMAAQGDHVEC--------- 347

Query: 170 KTVKLLLEAGA---DVSLQTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQT 226
             VK LL+  A   DV+L    ++ TA H  A  G+  V   +L++ +    ++ALN   
Sbjct: 348 --VKHLLQYKAPVDDVTL----DYLTALHVAAHCGHYRVTKLLLDKRANPN-ARALN--- 397

Query: 227 SIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVSSGKSLKHS 286
             G+TPL IAC +  ++++  ++   A +    + G + +H+AA  G+L           
Sbjct: 398 --GFTPLHIACKKNRIKVMELLVKYGASIQAITESGLTPIHVAAFMGHL----------- 444

Query: 287 VMSFRLPPHNIIPNGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDA 346
                    NI+    L+  + A  D+  +R +T LH+AA AGQ++V + LL  GA +DA
Sbjct: 445 ---------NIV---LLLLQNGASPDVTNIRGETALHMAARAGQVEVVRCLLRNGALVDA 492

Query: 347 TDDQGQKPIHVAAQNNFPEVAQIFLR--AHPSLVTATTKDGNTCAHIAAMQGSVGVIEEL 404
              + Q P+H+A++    E+ Q+ L+  AHP    A T +G T  HI+A +G V V   L
Sbjct: 493 RAREEQTPLHIASRLGKTEIVQLLLQHMAHPD---AATTNGYTPLHISAREGQVDVASVL 549

Query: 405 MKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQN 464
           ++   +  ++ +      TPL +AA+ G  +V ++L++  A+     K G T +H+AA  
Sbjct: 550 LEAGAAHSLATKKGF---TPLHVAAKYGSLDVAKLLLQRRAAADSAGKNGLTPLHVAAHY 606

Query: 465 GHNQVLEEMRSSKALNVYSKKLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASF 524
            + +V   +    A    + K G T LH+AA   Q      LL++           GA  
Sbjct: 607 DNQKVALLLLEKGASPHATAKNGYTPLHIAAKKNQMQIASTLLNY-----------GAE- 654

Query: 525 LGELGSESGMTPLHLAAYSGNENVVRLLLN 554
                ++ G+TPLHLA+  G+ ++V LLL+
Sbjct: 655 -TNTVTKQGVTPLHLASQEGHTDMVTLLLD 683

Attaches integral membrane proteins to cytoskeletal elements. Also binds to cytoskeletal proteins. Required for coordinate assembly of Na/Ca exchanger, Na/K ATPase and InsP3 receptor at sarcoplasmic reticulum sites in cardiomyocytes (By similarity). Required for the coordinated expression of the Na/K ATPase, Na/Ca exchanger and beta-2-spectrin (SPTBN1) in the inner segment of rod photoreceptors. Required for expression and targeting of SPTBN1 in neonatal cardiomyocytes and for the regulation of neonatal cardiomyocyte contraction rate.

Mus musculus (taxid: 10090)

>sp|Q12955|ANK3_HUMAN Ankyrin-3 OS=Homo sapiens GN=ANK3 PE=1 SV=3

 Score =  175 bits (443), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 173/581 (29%), Positives = 277/581 (47%), Gaps = 73/581 (12%)

Query: 7   GKLRETPLHIAARVKDGDRCALML-------LKSGAGPNLTNIAARVKDGDRCALMLLKS 59
           GK+R   LHIAAR  D    AL+L       ++S +G    +IAA   + +  A +LL  
Sbjct: 199 GKVRLPALHIAARKDDTKAAALLLQNDNNADVESKSGFTPLHIAAHYGNIN-VATLLLNR 257

Query: 60  GAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVV 119
            A  + T  +  TP+H A+K GN   ++LLL+ G     K + G TPLH  +R+   +VV
Sbjct: 258 AAAVDFTARNDITPLHVASKRGNANMVKLLLDRGAKIDAKTRDGLTPLHCGARSGHEQVV 317

Query: 120 DLLIQFVQNISQEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEAG 179
           ++L+     I          S  ++G S LH A Q            +    V+LLL+  
Sbjct: 318 EMLLDRAAPIL---------SKTKNGLSPLHMATQ-----------GDHLNCVQLLLQHN 357

Query: 180 ADVSLQTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIACNR 239
             V   T  ++ TA H  A  G+  V   +L++ +    +KALN     G+TPL IAC +
Sbjct: 358 VPVDDVT-NDYLTALHVAAHCGHYKVAKVLLDKKANPN-AKALN-----GFTPLHIACKK 410

Query: 240 GHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVSS---------------GKSLK 284
             ++++  +L + A +    + G + +H+AA  G++ + S               G++  
Sbjct: 411 NRIKVMELLLKHGASIQAVTESGLTPIHVAAFMGHVNIVSQLMHHGASPNTTNVRGETAL 470

Query: 285 HSVMSFRLPPHNIIPNGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASI 344
           H  M+ R     ++   +LV D  A ++      QTPLH++A  G+  + + LL  GAS 
Sbjct: 471 H--MAARSGQAEVV--RYLVQD-GAQVEAKAKDDQTPLHISARLGKADIVQQLLQQGASP 525

Query: 345 DATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIEEL 404
           +A    G  P+H++A+    +VA  FL  H + ++ TTK G T  H+AA  G + V   L
Sbjct: 526 NAATTSGYTPLHLSAREGHEDVA-AFLLDHGASLSITTKKGFTPLHVAAKYGKLEVANLL 584

Query: 405 MKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQN 464
           ++   S   + ++ +   TPL +AA   +  V  +L+  GAS     K G+T +H+AA+ 
Sbjct: 585 LQKSASPDAAGKSGL---TPLHVAAHYDNQKVALLLLDQGASPHAAAKNGYTPLHIAAKK 641

Query: 465 GHNQVLEEMRSSKALNVYSKKLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASF 524
               +   +    A      + G+ ++H+AA  G  D V  LL             G + 
Sbjct: 642 NQMDIATTLLEYGADANAVTRQGIASVHLAAQEGHVDMVSLLL-------------GRNA 688

Query: 525 LGELGSESGMTPLHLAAYSGNENVVRLLLNSAGVQVDAQTQ 565
              L ++SG+TPLHLAA     NV  +L+N  G  VDAQT+
Sbjct: 689 NVNLSNKSGLTPLHLAAQEDRVNVAEVLVNQ-GAHVDAQTK 728

Membrane-cytoskeleton linker. May participate in the maintenance/targeting of ion channels and cell adhesion molecules at the nodes of Ranvier and axonal initial segments.

Homo sapiens (taxid: 9606)

>sp|G5E8K5|ANK3_MOUSE Ankyrin-3 OS=Mus musculus GN=Ank3 PE=1 SV=1

 Score =  167 bits (424), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 171/591 (28%), Positives = 271/591 (45%), Gaps = 74/591 (12%)

Query: 12  TPLHIAARVKDGDRCALMLLKSGAG----PNLTNIAARVKDGDRCALMLLKSGAGPNLTT 67
           TPL +A +       +L+L     G    P L +IAAR KD  + A +LL++    ++ +
Sbjct: 158 TPLAVALQQGHDQVVSLLLENDTKGKVRLPAL-HIAAR-KDDTKAAALLLQNDTNADVES 215

Query: 68  DDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVVDLLIQFVQ 127
             G TP+H AA YGN+    LLL       +  +   TPLH+AS+   A +V LL+    
Sbjct: 216 KSGFTPLHIAAHYGNINVATLLLNRAAAVDFTARNDITPLHVASKRGNANMVKLLLDRGA 275

Query: 128 NISQEKVLEYVNSVNEDGASALHYACQVTKAELI--------PITSKEDQ---------- 169
            I         ++   DG + LH   +    +++        PI SK             
Sbjct: 276 KI---------DAKTRDGLTPLHCGARSGHEQVVEMLLDRSAPILSKTKNGLSPLHMATQ 326

Query: 170 ----KTVKLLLEAGADVSLQTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQ 225
                 V+LLL+    V   T  ++ TA H  A  G+  V   +L++ +    +KALN  
Sbjct: 327 GDHLNCVQLLLQHNVPVDDVT-NDYLTALHVAAHCGHYKVAKVLLDKKASPN-AKALN-- 382

Query: 226 TSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVSS-----G 280
              G+TPL IAC +  + ++  +L + A +    + G + +H+AA  G++ + S     G
Sbjct: 383 ---GFTPLHIACKKNRIRVMELLLKHGASIQAVTESGLTPIHVAAFMGHVNIVSQLMHHG 439

Query: 281 KSLKHSVMSFRLPPHNIIPNG------FLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVC 334
            S   + +      H    +G      +LV D  A ++      QTPLH++A  G+  + 
Sbjct: 440 ASPNTTNVRGETALHMAARSGQAEVVRYLVQD-GAQVEAKAKDDQTPLHISARLGKADIV 498

Query: 335 KLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAM 394
           + LL  GAS +A    G  P+H+AA+    +VA  FL  H + ++ TTK G T  H+AA 
Sbjct: 499 QQLLQQGASPNAATTSGYTPLHLAAREGHEDVA-AFLLDHGASLSITTKKGFTPLHVAAK 557

Query: 395 QGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTG 454
            G + V   L++   S   + ++ +   TPL +AA   +  V  +L+  GAS     K G
Sbjct: 558 YGKLEVASLLLQKSASPDAAGKSGL---TPLHVAAHYDNQKVALLLLDQGASPHAAAKNG 614

Query: 455 FTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLGVTALHVAAYFGQADTVRELLSHVPGTV 514
           +T +H+AA+     +   +    A      + G+ ++H+AA  G  D V  LLS      
Sbjct: 615 YTPLHIAAKKNQMDIATSLLEYGADANAVTRQGIASVHLAAQEGHVDMVSLLLSRNANV- 673

Query: 515 KSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVRLLLNSAGVQVDAQTQ 565
                        L ++SG+TPLHLAA     NV  +L+N  G  VDAQT+
Sbjct: 674 ------------NLSNKSGLTPLHLAAQEDRVNVAEVLVNQ-GAHVDAQTK 711

Membrane-cytoskeleton linker. May participate in the maintenance/targeting of ion channels and cell adhesion molecules at the nodes of Ranvier and axonal initial segments (By similarity). In skeletal muscle, required for costamere localization of DMD and betaDAG1.

Mus musculus (taxid: 10090)

>sp|B2RXR6|ANR44_MOUSE Serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit B OS=Mus musculus GN=Ankrd44 PE=2 SV=1

 Score =  156 bits (394), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 173/607 (28%), Positives = 267/607 (43%), Gaps = 88/607 (14%)

Query: 2   LQQNSGKLR------ETPLHIAARVKDGDRCAL-MLLKSGAGPNLTNI-------AARVK 47
           L QN G++        TPLH+AAR   G    +  L+ SGA      I        A + 
Sbjct: 325 LIQNGGEIDCVDKDGNTPLHVAAR--HGHELLINTLITSGADTAKCGIHSMFPLHLAALN 382

Query: 48  DGDRCALMLLKSGAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPL 107
               C   LL SG   +     G+T +HAAA  GN+  ++LL   G D   K+K G TPL
Sbjct: 383 AHSDCCRKLLSSGFEIDTPDTFGRTCLHAAAAGGNVECIKLLQSSGADFHKKDKCGRTPL 442

Query: 108 HLASRNCKAEVVDLLIQFVQNISQEKVLEYVNSVNEDGASALHYAC--QVTKAELI---- 161
           H A+ NC    +  L+    N         VN  ++ G +ALHYA    + + ++I    
Sbjct: 443 HYAAANCHFHCIKALVTTGAN---------VNETDDWGRTALHYAAASDMDRNKMILGNA 493

Query: 162 -----------PITSKEDQKTVKLLLEAGADVSLQTKQNHETAFHYCAVAGNNDVLTGML 210
                       +  K+    ++ LL+  A+ S++ K+ + +  HY A  G+   L  +L
Sbjct: 494 HDNSEELERAREVKEKDAALCLEFLLQNDANPSIRDKEGYNS-IHYAAAYGHRQCLELLL 552

Query: 211 EQM-SGTEISK--ALNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALH 267
           E+  +G E S   AL        +PL +A   GH + +  +L +   +D+ D++GR+AL+
Sbjct: 553 ERTNTGFEESDGGALK-------SPLHLAAYNGHHQALEVLLQSLVDLDIRDEKGRTALY 605

Query: 268 LAAEHGYLK-----VSSGKSL--KHSVMSFRLPPHNIIPNGFLV--------HDHAAVID 312
           LAA  G+ +     V+ G S+  K +V   R P H  + NG  +         D+  V+D
Sbjct: 606 LAAFKGHTECVEALVNQGASIFVKDNVTK-RTPLHASVINGHTLCLRLLLETADNPEVVD 664

Query: 313 ILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLR 372
           +   + QTPL LA   G +    LLL+  A++DA D  G   +H        E  Q+ L 
Sbjct: 665 VKDAKGQTPLMLAVAYGHIDAVSLLLEKEANVDAVDIVGCTALHRGIMTGHEECVQMLLE 724

Query: 373 AHPSLVTATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGG 432
              S++   ++ G T  H AA +G    + EL++   S            TPL  A   G
Sbjct: 725 QEASILCKDSR-GRTPLHYAAARGHATWLNELLQIALSEEDCCLKDNQGYTPLHWACYNG 783

Query: 433 HANVVRVLVKAGASCTDEN-KTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKK--LGVT 489
           + N + VL++    C  +     FT +H A  NGH      +  +   ++ S +   G T
Sbjct: 784 NENCIEVLLE--QKCFRKFIGNPFTPLHCAIINGHESCASLLLGAIDPSIVSCRDDKGRT 841

Query: 490 ALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVV 549
            LH AA+   A+ ++ LL H       D    A         SG T L +AA +G    V
Sbjct: 842 TLHAAAFGDHAECLQLLLRH-------DAQVNAV------DNSGKTALMMAAENGQAGAV 888

Query: 550 RLLLNSA 556
            +L+NSA
Sbjct: 889 DILVNSA 895

Putative regulatory subunit of protein phosphatase 6 (PP6) that may be involved in the recognition of phosphoprotein substrates.

Mus musculus (taxid: 10090)

>sp|Q54KA7|SECG_DICDI Ankyrin repeat, PH and SEC7 domain containing protein secG OS=Dictyostelium discoideum GN=secG PE=2 SV=1

 Score =  152 bits (385), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 148/517 (28%), Positives = 231/517 (44%), Gaps = 68/517 (13%)

Query: 48  DGDRCALMLLKSGAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPL 107
           D ++ + +L  S   P+    + +TP+H AA  G+   +  LL+   +   K+  G TPL
Sbjct: 47  DIEKLSNLLNNSATSPDTPDSEKRTPLHHAAFCGSAACVNFLLDKKANANIKDSAGNTPL 106

Query: 108 HLASRNCKAEVVDLLIQFVQNISQEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKE 167
             AS     E + LL+        EK    VN+ ++   + LH A     AE        
Sbjct: 107 QWASSRGHLECIKLLV--------EKGGVDVNTKDDKNGTPLHKASLFASAE-------- 150

Query: 168 DQKTVKLLLEAGADVSLQTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTS 227
               V  LL   AD    T  N ET  H+ +  GN   +  +++  S       +N   +
Sbjct: 151 ---CVLYLLNGKADPRAVT-TNGETPLHHASAGGNPQCVELLIKADS------KVNAVDN 200

Query: 228 IGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVSSGKSLKHSV 287
              TPL  A   GH   V+ +L   A+VD  D  G S LH AA  GY+            
Sbjct: 201 DCITPLHQASFSGHSSCVSLLLKKGAKVDPRDIHGISPLHNAASAGYVDCVE-------- 252

Query: 288 MSFRLPPHNIIPNGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDAT 347
                    ++ NG         I+ + +   TPLH     G LQ+ K L++LGA I+  
Sbjct: 253 --------QLVRNG-------ENINCVDIEGVTPLHHTCFNGNLQLTKRLIELGAKINMV 297

Query: 348 DDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIEELMKF 407
           D+ G+ P+H AA N   EV +  L   P+++       +T  H+AA  G + +++ L+++
Sbjct: 298 DEMGETPLHKAAFNGHKEVCEYLLYLDPTMIDCRDSRQSTSLHLAAFNGLLDMVDLLIRY 357

Query: 408 DRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHN 467
                I+ ++    ATPL  A+  GH++  ++LV  GA     +  G T +H AA NG +
Sbjct: 358 --KAQINIKDE-EGATPLHKASFNGHSSCAKLLVDKGAPICIVDSQGATPLHKAAFNGRS 414

Query: 468 QVLEEM-RSSKALNVYSKKLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLG 526
           + L  + RS   L V   + G T LH AAY G +D  R LL             GA+ + 
Sbjct: 415 KCLATLIRSGAELEVKDSQ-GGTPLHNAAYNGHSDCCRILLK-----------KGAN-VN 461

Query: 527 ELGSESGMTPLHLAAYSGNENVVRLLLNSAGVQVDAQ 563
            + + S  TPLHLA+ +G  + V +L+     ++DA+
Sbjct: 462 AVDTHSS-TPLHLASAAGARDTVDVLIQFKA-RIDAK 496

Dictyostelium discoideum (taxid: 44689)

>sp|Q5F478|ANR44_CHICK Serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit B OS=Gallus gallus GN=ANKRD44 PE=2 SV=1

 Score =  152 bits (384), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 170/600 (28%), Positives = 258/600 (43%), Gaps = 77/600 (12%)

Query: 2   LQQNSGKLR------ETPLHIAARVKDGDRCAL-MLLKSGAGPNLTNI-------AARVK 47
           L QN G++        TPLH+AAR   G    +  L+ SGA      I        A + 
Sbjct: 325 LIQNGGEIDCVDKDGNTPLHVAARY--GHELLINTLITSGADTAKCGIHNMFPLHLAALN 382

Query: 48  DGDRCALMLLKSGAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPL 107
               C   LL SG   +     G+T +HAAA  GN+  ++LL   G D   K+K G TPL
Sbjct: 383 AHSDCCRKLLSSGFEIDTPDSFGRTCLHAAAAGGNVECIKLLQSSGADFNKKDKRGRTPL 442

Query: 108 HLASRNCKAEVVDLLIQFVQNISQEKVLEYVNSVNEDGASALHYACQV------------ 155
           H A+ NC    ++ L+    NI         N  ++ G + LHYA               
Sbjct: 443 HYAAANCHFHCIETLVTTGANI---------NETDDWGRTPLHYAAASDMDRKKNILGNS 493

Query: 156 -TKAELIPITSKEDQK----TVKLLLEAGADVSLQTKQNHETAFHYCAVAGNNDVLTGML 210
              AE +  TS+  +K     ++ LL+  A+ S+Q K+ + T  HY A  G+   L  +L
Sbjct: 494 HENAEELERTSEMKEKEAALCLEFLLQNDANPSIQDKEGYNT-VHYAAAYGHRQCLELLL 552

Query: 211 EQMSGTEISKALNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAA 270
           E+ S    +      +S   +PL +A   GH + +  +L +   +D+ D++GR+AL LAA
Sbjct: 553 EKNS----NMFEESDSSATKSPLHLAAYNGHHQALEVLLQSLVDLDIKDEKGRTALDLAA 608

Query: 271 EHGYLK-----VSSGKS--LKHSVMSFRLPPHNIIPNGF-----LVHDHAAVIDILTLRK 318
             G+ +     +S G S  +K +V   R P H  + NG      L+ + A   D+   + 
Sbjct: 609 FKGHAECVEALISQGASVTVKDNVTK-RTPLHASVINGHTPCLRLLLEVADNPDVTDAKG 667

Query: 319 QTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLV 378
           QTPL LA   G +    LLL+  AS+DA D  G   +H        E  Q+ L    S++
Sbjct: 668 QTPLMLAVAYGHIDAVSLLLEKEASVDAADLLGCTALHRGIMTGHEECVQMLLEKEVSIL 727

Query: 379 TATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVR 438
               + G T  H AA +G    + EL++   S    +       TPL  A   GH N + 
Sbjct: 728 CKDAR-GRTPLHFAAARGHATWLSELLQIALSEEDCSLKDNQGYTPLHWACYNGHENCIE 786

Query: 439 VLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKK--LGVTALHVAAY 496
           VL++            F+ +H A  N H      +  +   ++ + K   G T LH AA+
Sbjct: 787 VLLEQKFF-RKFYGNSFSPLHCAVINDHENCASMLIGAIDASIVNCKDDKGRTPLHAAAF 845

Query: 497 FGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVRLLLNSA 556
               + ++ LLSH       D              +G T L +AA +G+   V  L+N A
Sbjct: 846 ADHVECLQLLLSHSAQVNAVD-------------HAGKTALMMAAQNGHVGAVDFLVNIA 892

Putative regulatory subunit of protein phosphatase 6 (PP6) that may be involved in the recognition of phosphoprotein substrates.

Gallus gallus (taxid: 9031)

>sp|Q4UMH6|Y381_RICFE Putative ankyrin repeat protein RF_0381 OS=Rickettsia felis (strain ATCC VR-1525 / URRWXCal2) GN=RF_0381 PE=4 SV=1

 Score =  152 bits (384), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 159/541 (29%), Positives = 248/541 (45%), Gaps = 64/541 (11%)

Query: 55   MLLKSGAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNC 114
            +L+  GA PN T   G   +H AAK GNL   +LL ++G D   K   GET LH A ++ 
Sbjct: 623  LLITHGANPNATNCHGVISLHCAAKNGNLDLAKLLAKNGADVNAKTDNGETVLHYAVKSG 682

Query: 115  KAEVVDLLIQFVQNISQEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKL 174
               +V  LI+   NI  +          ++G + LHYA     ++L           V L
Sbjct: 683  NLHLVKWLIENQANIHAKT---------DNGETVLHYAVSFNNSDL-----------VYL 722

Query: 175  LLEAGADVSLQTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLL 234
            L+  GADV+ +T  N  TA HY    GN D+++ ++    G ++    N +T+ G T L 
Sbjct: 723  LIAYGADVNAKT-DNGLTALHYAVYDGNLDLVSLLISH--GADV----NAKTNSGETILY 775

Query: 235  IACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVSS-----GKSLKH--SV 287
             A + G  +LV  ++   A V+     G + LH A E G L + S     G ++ +  ++
Sbjct: 776  SAVDYGSPDLVYLLIAYGADVNAKTDNGETVLHYAVESGNLDLVSLLIHNGANVNNAKTI 835

Query: 288  MSFRLPPHNIIPNGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDAT 347
            + F     N+    +L+ + A  I   T   +T LH AAE+G L +   L+   A I A 
Sbjct: 836  LHFAAKSGNLNLVNWLIKNKAD-IHAKTNSGETILHFAAESGNLNLVNWLIKNKADIHAK 894

Query: 348  DDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIEELMKF 407
             + G+  +H AA++    +   +L  + + + A T  G T  H AA  G++ ++  L+K 
Sbjct: 895  TNSGETILHFAAKSGNLNLVN-WLIKNKADIHAKTNSGETILHFAAKSGNLNLVNWLIK- 952

Query: 408  DRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHN 467
                 I A+    E T L  AAE G+ N+V +L+  G     +   G TA+H A ++G N
Sbjct: 953  -NKADIHAKTNSGE-TILHFAAESGNLNLVSLLIHNGTDINTKTDDGLTALHYAVESG-N 1009

Query: 468  QVLEEMRSSKALNVYSK-KLGVTALHVAAYFGQADTVREL--------------LSHVPG 512
              L  +   K ++V +K   G T LH A   G  D V  L              L+ +  
Sbjct: 1010 LNLVSLLIHKGIDVNAKTNSGETILHFAVDLGSLDLVSLLMVRGADVNAKTDDGLTALHY 1069

Query: 513  TVKSDPPTGASFLGELGSE------SGMTPLHLAAYSGNENVVRLLLNSAGVQVDAQTQE 566
             V+SD     S L   G++      SG TPLH A    + ++V LL+++     D  T+ 
Sbjct: 1070 AVESDNLALVSLLMVYGADVNAKNNSGETPLHYAVIFNSLDLVSLLIHNGA---DINTKN 1126

Query: 567  N 567
            N
Sbjct: 1127 N 1127

Rickettsia felis (strain ATCC VR-1525 / URRWXCal2) (taxid: 315456)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	567
328718834	1716	PREDICTED: serine/threonine-protein phos	0.943	0.311	0.687	0.0
383850421	1711	PREDICTED: serine/threonine-protein phos	0.940	0.311	0.705	0.0
380011932	1711	PREDICTED: LOW QUALITY PROTEIN: serine/t	0.940	0.311	0.701	0.0
48095512	1711	PREDICTED: serine/threonine-protein phos	0.940	0.311	0.701	0.0
307185525	1504	Ankyrin-1 [Camponotus floridanus]	0.940	0.354	0.696	0.0
340728307	1712	PREDICTED: serine/threonine-protein phos	0.938	0.310	0.705	0.0
350403217	1712	PREDICTED: serine/threonine-protein phos	0.938	0.310	0.705	0.0
345488328	1635	PREDICTED: serine/threonine-protein phos	0.940	0.325	0.691	0.0
340728311	1479	PREDICTED: serine/threonine-protein phos	0.938	0.359	0.705	0.0
350403222	1479	PREDICTED: serine/threonine-protein phos	0.938	0.359	0.705	0.0

>gi|328718834|ref|XP_001945728.2| PREDICTED: serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit A-like [Acyrthosiphon pisum]

 Score =  796 bits (2057), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 394/573 (68%), Positives = 457/573 (79%), Gaps = 38/573 (6%)

Query: 7   GKLRETPLHIAARVKDGDRCALMLLKSGAGPNLTNIAARVKDGDRCALMLLKSGAGPNLT 66
           GKLRETPLHIAARV                          KDGDRCALMLLKSGAGPNL 
Sbjct: 453 GKLRETPLHIAARV--------------------------KDGDRCALMLLKSGAGPNLA 486

Query: 67  TDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVVDLLIQFV 126
            DDGQTPVH AA+YGNL+TLQLLL+DGGDP++KNK+GETPLHLA R+C+A++V  L+ FV
Sbjct: 487 MDDGQTPVHVAAQYGNLITLQLLLDDGGDPLFKNKVGETPLHLACRSCQADIVGQLVNFV 546

Query: 127 QNISQEKVL-EYVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGADVSLQ 185
           ++   ++V   YVNSVNEDGASALHYA  + + E+    S  D K +KLL E GAD++L+
Sbjct: 547 KSKQGDEVANSYVNSVNEDGASALHYAANIKQTEVNESKSNNDAKVIKLLFEGGADINLR 606

Query: 186 TKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIACNRGHMELV 245
           TK +HETA H+CAVAGNNDVLT ML  MS TE+ +++N+Q+S+GWTPLLIAC+RGHM LV
Sbjct: 607 TKLHHETALHFCAVAGNNDVLTAMLNGMSPTEVQQSMNRQSSVGWTPLLIACHRGHMSLV 666

Query: 246 NTMLNNHARVDVFDQEGRSALHLAAEHGYLKVSSGKSLKHSVMSFR-----LPPHNIIPN 300
           NTMLNNHARVDVFD EGRSALHLAAE GYLKV        + ++ +        H    N
Sbjct: 667 NTMLNNHARVDVFDNEGRSALHLAAERGYLKVCDALLTHKAFINSKSRVGWTALHLAAMN 726

Query: 301 GF------LVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKP 354
           GF      L+HDH AVIDILTLRKQTPLHLAA AGQL+VC+LLLDLGA+IDATDDQGQKP
Sbjct: 727 GFADLCRFLIHDHNAVIDILTLRKQTPLHLAASAGQLEVCRLLLDLGANIDATDDQGQKP 786

Query: 355 IHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVIS 414
           IH+A+QNN+PEV  +FL+ HP LV A+TKDGNTCAHIAAMQGSV VI ELMKFD++GVIS
Sbjct: 787 IHIASQNNYPEVVHLFLQQHPQLVLASTKDGNTCAHIAAMQGSVTVIIELMKFDKNGVIS 846

Query: 415 ARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMR 474
           ARNR+TEATPLQLAAEGGHA VV+VLV+AGASC+DENK GFTAVHLAAQNGH  VLE +R
Sbjct: 847 ARNRITEATPLQLAAEGGHAQVVKVLVRAGASCSDENKAGFTAVHLAAQNGHLAVLEVLR 906

Query: 475 SSKALNVYSKKLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGM 534
           SS++L + SK+LG+TALH+AAY GQ DTVRELLSH+P TVKSDPP+G S LG LG+ESGM
Sbjct: 907 SSQSLKISSKRLGMTALHMAAYCGQTDTVRELLSHIPATVKSDPPSGVSVLGVLGNESGM 966

Query: 535 TPLHLAAYSGNENVVRLLLNSAGVQVDAQTQEN 567
           TPLH AAYSGNENVVRLLLNSAGVQVDA T E+
Sbjct: 967 TPLHFAAYSGNENVVRLLLNSAGVQVDASTVES 999

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383850421|ref|XP_003700794.1| PREDICTED: serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit C-like [Megachile rotundata]

 Score =  791 bits (2042), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 404/573 (70%), Positives = 455/573 (79%), Gaps = 40/573 (6%)

Query: 7   GKLRETPLHIAARVKDGDRCALMLLKSGAGPNLTNIAARVKDGDRCALMLLKSGAGPNLT 66
           GKLRETPLHIAARV                           DGDRCALMLLKSGAGPNLT
Sbjct: 452 GKLRETPLHIAARVP--------------------------DGDRCALMLLKSGAGPNLT 485

Query: 67  TDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVVDLLIQFV 126
           TDDGQTPVH AA +GNL TL+LLLEDGGDPMYK+K GETPLHLA R CKA+VV  LI+FV
Sbjct: 486 TDDGQTPVHVAASHGNLATLKLLLEDGGDPMYKSKNGETPLHLACRGCKADVVRHLIEFV 545

Query: 127 -QNISQEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGADVSLQ 185
            +    E    YVNS+  +GASALHYA Q+  +E+   T  +D+  ++ LLE GADVSLQ
Sbjct: 546 KEKKGPETATSYVNSLTNEGASALHYAAQIEPSEVA--TPGDDRAVIRALLEGGADVSLQ 603

Query: 186 TKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIACNRGHMELV 245
           TKQ  E+AFH+CA+AGNN+VL+ M+ +MS TE+ KALN+Q+++GWTPLLIA +RGHMELV
Sbjct: 604 TKQAQESAFHHCALAGNNEVLSEMISRMSATEVQKALNRQSAVGWTPLLIAAHRGHMELV 663

Query: 246 NTMLNNHARVDVFDQEGRSALHLAAEHGYLKVS----SGKSLKHSVMSF-RLPPHNIIPN 300
            T+L NHARVDVFD EGRSALHLAAEHGYL+V     + K+  +S     R   H    N
Sbjct: 664 TTLLANHARVDVFDLEGRSALHLAAEHGYLQVCDALLANKAFINSKSRVGRTALHLAAMN 723

Query: 301 G------FLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKP 354
           G      FLV DH A ID+LTLRKQTPLHLAA AGQL+VCKLLL+LGASIDATDDQGQKP
Sbjct: 724 GYSHLVKFLVQDHGAAIDVLTLRKQTPLHLAAGAGQLEVCKLLLELGASIDATDDQGQKP 783

Query: 355 IHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVIS 414
           IH AA NN+ EVAQ+FL+ HPSLV A TKDGNTCAHIAAMQGSV VIEELMKFDR GVIS
Sbjct: 784 IHAAAMNNYAEVAQLFLQRHPSLVMACTKDGNTCAHIAAMQGSVRVIEELMKFDRQGVIS 843

Query: 415 ARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMR 474
           ARN++TEATPLQLAAEGGHA VV+ LV+AGASC DEN+ GFTAVHLAAQ+GH QVLE MR
Sbjct: 844 ARNKLTEATPLQLAAEGGHAEVVKALVRAGASCADENRAGFTAVHLAAQHGHGQVLEVMR 903

Query: 475 SSKALNVYSKKLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGM 534
           SS++L + SKKLGVTALHVAAYFGQADTVRELL+HVPGTVKSDPPTG S +GELGSESGM
Sbjct: 904 SSQSLRISSKKLGVTALHVAAYFGQADTVRELLTHVPGTVKSDPPTGGSLVGELGSESGM 963

Query: 535 TPLHLAAYSGNENVVRLLLNSAGVQVDAQTQEN 567
           TPLHLAAYSGNENVVRLLLNSAGVQV+A T EN
Sbjct: 964 TPLHLAAYSGNENVVRLLLNSAGVQVEAATTEN 996

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380011932|ref|XP_003690046.1| PREDICTED: LOW QUALITY PROTEIN: serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit B-like [Apis florea]

 Score =  776 bits (2003), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 402/573 (70%), Positives = 452/573 (78%), Gaps = 40/573 (6%)

Query: 7   GKLRETPLHIAARVKDGDRCALMLLKSGAGPNLTNIAARVKDGDRCALMLLKSGAGPNLT 66
           GKLRETPLHIAARV                           DGDRCALMLLKSGAGPNLT
Sbjct: 449 GKLRETPLHIAARVS--------------------------DGDRCALMLLKSGAGPNLT 482

Query: 67  TDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVVDLLIQFV 126
           TDDGQTPVH AA +GNL TL LLLEDGGDPMYK+K GETPLHLA R CKA+VV  LI+FV
Sbjct: 483 TDDGQTPVHVAASHGNLATLLLLLEDGGDPMYKSKNGETPLHLACRGCKADVVRHLIRFV 542

Query: 127 -QNISQEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGADVSLQ 185
            +    E    YVNS+  +GAS LHYA Q+  +E+   T  +D+  ++ LLE GADVSLQ
Sbjct: 543 KERRGAETATSYVNSLTNEGASGLHYAAQIEPSEVG--TPGDDRAVIRALLEGGADVSLQ 600

Query: 186 TKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIACNRGHMELV 245
           TKQ  E+AFH+CA+AGNN++L+ M+  MS TE+ KALN+Q+++GWTPLLIA +RGHMELV
Sbjct: 601 TKQAQESAFHHCALAGNNEILSEMISGMSATEVQKALNRQSAVGWTPLLIAAHRGHMELV 660

Query: 246 NTMLNNHARVDVFDQEGRSALHLAAEHGYLKVS----SGKSLKHSVMSF-RLPPHNIIPN 300
            T+L NHARVDVFD EGRSALHLAAEHGYL+V     + K+  +S     R   H    N
Sbjct: 661 ATLLANHARVDVFDLEGRSALHLAAEHGYLQVCDALLANKAFINSKSRVGRTALHLAAMN 720

Query: 301 G------FLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKP 354
           G      FLV D+ A ID+LTLRKQTPLHLAA AGQL+VCKLLL+LGASIDATDDQGQKP
Sbjct: 721 GYSHLVKFLVQDYGAAIDVLTLRKQTPLHLAAGAGQLEVCKLLLELGASIDATDDQGQKP 780

Query: 355 IHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVIS 414
           IH AA NN+ EVAQ+FL+ HPSLV A TKDGNTCAHIAAMQGSV VIEELMKFDR GVIS
Sbjct: 781 IHAAAMNNYAEVAQLFLQRHPSLVMACTKDGNTCAHIAAMQGSVRVIEELMKFDRQGVIS 840

Query: 415 ARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMR 474
           ARN++TEATPLQLAAEGGHA VVR LV+AGASC DEN+ GFTAVHLAAQ+GH QVLE MR
Sbjct: 841 ARNKLTEATPLQLAAEGGHAEVVRALVRAGASCADENRAGFTAVHLAAQHGHGQVLEVMR 900

Query: 475 SSKALNVYSKKLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGM 534
           SS++L + SKKLGVTALHVAAYFGQADTVRELL+HVPGTVKSDPPTG S +GELGSESGM
Sbjct: 901 SSQSLRISSKKLGVTALHVAAYFGQADTVRELLTHVPGTVKSDPPTGGSLVGELGSESGM 960

Query: 535 TPLHLAAYSGNENVVRLLLNSAGVQVDAQTQEN 567
           TPLHLAAYSGNENVVRLLLNSAGVQV+A T EN
Sbjct: 961 TPLHLAAYSGNENVVRLLLNSAGVQVEAATTEN 993

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|48095512|ref|XP_392309.1| PREDICTED: serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit C [Apis mellifera]

 Score =  775 bits (2001), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 402/573 (70%), Positives = 452/573 (78%), Gaps = 40/573 (6%)

Query: 7   GKLRETPLHIAARVKDGDRCALMLLKSGAGPNLTNIAARVKDGDRCALMLLKSGAGPNLT 66
           GKLRETPLHIAARV                           DGDRCALMLLKSGAGPNLT
Sbjct: 449 GKLRETPLHIAARVA--------------------------DGDRCALMLLKSGAGPNLT 482

Query: 67  TDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVVDLLIQFV 126
           TDDGQTPVH AA +GNL TL LLLEDGGDPM K+K GETPLHLA R CKA+VV  LI+FV
Sbjct: 483 TDDGQTPVHVAASHGNLATLLLLLEDGGDPMCKSKNGETPLHLACRGCKADVVRHLIKFV 542

Query: 127 -QNISQEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGADVSLQ 185
            +    E    YVNS+  +GAS LHYA Q+  +E+   T+ +D+  ++ LLE GADVSLQ
Sbjct: 543 KERRGAETATSYVNSLTNEGASGLHYAAQIEPSEVG--TAGDDRAVIRALLEGGADVSLQ 600

Query: 186 TKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIACNRGHMELV 245
           TKQ  E+AFH+CA+AGNN++L+ M+  MS TE+ KALN+Q+++GWTPLLIA +RGHMELV
Sbjct: 601 TKQAQESAFHHCALAGNNEILSEMISGMSATEVQKALNRQSAVGWTPLLIAAHRGHMELV 660

Query: 246 NTMLNNHARVDVFDQEGRSALHLAAEHGYLKVS----SGKSLKHSVMSF-RLPPHNIIPN 300
            T+L NHARVDVFD EGRSALHLAAEHGYL+V     + K+  +S     R   H    N
Sbjct: 661 TTLLANHARVDVFDLEGRSALHLAAEHGYLQVCDALLANKAFINSKSRVGRTALHLAAMN 720

Query: 301 G------FLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKP 354
           G      FLV DH A ID+LTLRKQTPLHLAA AGQL+VCKLLL+LGASIDATDDQGQKP
Sbjct: 721 GYSHLVKFLVQDHGAAIDVLTLRKQTPLHLAAGAGQLEVCKLLLELGASIDATDDQGQKP 780

Query: 355 IHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVIS 414
           IH AA NN+ EVAQ+FL+ HPSLV A TKDGNTCAHIAAMQGSV VIEELMKFDR GVIS
Sbjct: 781 IHAAAMNNYAEVAQLFLQRHPSLVMACTKDGNTCAHIAAMQGSVRVIEELMKFDRQGVIS 840

Query: 415 ARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMR 474
           ARN++TEATPLQLAAEGGHA VVR LV+AGASC DEN+ GFTAVHLAAQ+GH QVLE MR
Sbjct: 841 ARNKLTEATPLQLAAEGGHAEVVRALVRAGASCADENRAGFTAVHLAAQHGHGQVLEVMR 900

Query: 475 SSKALNVYSKKLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGM 534
           SS++L + SKKLGVTALHVAAYFGQADTVRELL+HVPGTVKSDPPTG S +GELGSESGM
Sbjct: 901 SSQSLRISSKKLGVTALHVAAYFGQADTVRELLTHVPGTVKSDPPTGGSLVGELGSESGM 960

Query: 535 TPLHLAAYSGNENVVRLLLNSAGVQVDAQTQEN 567
           TPLHLAAYSGNENVVRLLLNSAGVQV+A T EN
Sbjct: 961 TPLHLAAYSGNENVVRLLLNSAGVQVEAATTEN 993

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307185525|gb|EFN71501.1| Ankyrin-1 [Camponotus floridanus]

 Score =  775 bits (2000), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 399/573 (69%), Positives = 454/573 (79%), Gaps = 40/573 (6%)

Query: 7   GKLRETPLHIAARVKDGDRCALMLLKSGAGPNLTNIAARVKDGDRCALMLLKSGAGPNLT 66
           GKLRETPLHIAARV D                          GDRCALMLLKSGAGPNLT
Sbjct: 417 GKLRETPLHIAARVID--------------------------GDRCALMLLKSGAGPNLT 450

Query: 67  TDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVVDLLIQFV 126
           TDDGQTPVH AA +GNL TL LLLEDGGDPM+K+K GETPLHLA R CKA+VV  LI+FV
Sbjct: 451 TDDGQTPVHVAASHGNLATLLLLLEDGGDPMFKSKNGETPLHLACRGCKADVVRHLIEFV 510

Query: 127 QNISQEKV-LEYVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGADVSLQ 185
           ++    +V   YVNS+  DGASALHYA Q+  +E+I     +D+  V+ LL++GADVSLQ
Sbjct: 511 KDTKGPEVATAYVNSLTNDGASALHYAAQIEPSEVI--VPGDDRAVVRALLDSGADVSLQ 568

Query: 186 TKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIACNRGHMELV 245
           TKQ  ETAFH+CA+AGNN++L  M+ +MS T++ KALN+Q ++GWTPLLIA NRGHMELV
Sbjct: 569 TKQAQETAFHHCALAGNNEILEEMISRMSSTDVQKALNRQNAVGWTPLLIASNRGHMELV 628

Query: 246 NTMLNNHARVDVFDQEGRSALHLAAEHGYLKVS----SGKSLKHSVMSF-RLPPHNIIPN 300
            T+L NH RVDVFD EGRSALHLAAEHGYL+V     + K+  +S     R   H    N
Sbjct: 629 TTLLANHGRVDVFDLEGRSALHLAAEHGYLQVCDALLANKAFINSKSRVGRTALHLAAMN 688

Query: 301 G------FLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKP 354
           G      FL+ DH A ID+LTLRKQTPLHLAA AGQL+VCKLLLDLGA+IDATDDQGQKP
Sbjct: 689 GYTHLVRFLIQDHGAAIDVLTLRKQTPLHLAAGAGQLEVCKLLLDLGANIDATDDQGQKP 748

Query: 355 IHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVIS 414
           IH AA NNF EV Q+FL+ HPSLV A TKDGNTCAHIAAMQGSV VIEELMKFDR GVI+
Sbjct: 749 IHAAAMNNFAEVVQLFLQRHPSLVMACTKDGNTCAHIAAMQGSVRVIEELMKFDRQGVIT 808

Query: 415 ARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMR 474
           ARN++T+ATPLQLAAEGGHA VV+VLV+AGASC+DEN+ GFTAVHLAA+ GH QVLE MR
Sbjct: 809 ARNKLTDATPLQLAAEGGHAEVVKVLVRAGASCSDENRAGFTAVHLAAEYGHGQVLEVMR 868

Query: 475 SSKALNVYSKKLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGM 534
           SS++L + SKKLGVTALHVAAYFGQADTVRELL+H+PGTVKSDPPTG S +GELG+ESGM
Sbjct: 869 SSQSLRIVSKKLGVTALHVAAYFGQADTVRELLTHIPGTVKSDPPTGGSLVGELGAESGM 928

Query: 535 TPLHLAAYSGNENVVRLLLNSAGVQVDAQTQEN 567
           TPLHLAAYSGNENVVRLLLNSAGVQVDA T EN
Sbjct: 929 TPLHLAAYSGNENVVRLLLNSAGVQVDAATTEN 961

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340728307|ref|XP_003402467.1| PREDICTED: serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit C-like isoform 1 [Bombus terrestris]

 Score =  773 bits (1997), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 405/574 (70%), Positives = 454/574 (79%), Gaps = 42/574 (7%)

Query: 7   GKLRETPLHIAARVKDGDRCALMLLKSGAGPNLTNIAARVKDGDRCALMLLKSGAGPNLT 66
           GKLRETPLHIAARV                           DGDRCALMLLKSGAGPNLT
Sbjct: 451 GKLRETPLHIAARVP--------------------------DGDRCALMLLKSGAGPNLT 484

Query: 67  TDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVVDLLIQFV 126
           TDDGQTPVH AA +GNL TL LLLEDGGDPMYK+K GETPLHLA R CKA+VV  LI+FV
Sbjct: 485 TDDGQTPVHVAASHGNLTTLLLLLEDGGDPMYKSKNGETPLHLACRGCKADVVRHLIEFV 544

Query: 127 -QNISQEKVLEYVNSVNEDGASALHYACQVTKAEL-IPITSKEDQKTVKLLLEAGADVSL 184
            +    E    YVNS+  +GASALHYA Q+  +E+ IP    +D+  ++ LLE GADVSL
Sbjct: 545 KERKGPETATAYVNSLTNEGASALHYAAQIEPSEVEIP---GDDRAVIRALLEGGADVSL 601

Query: 185 QTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIACNRGHMEL 244
           QTKQ  E+AFH+CA+AGNN+VLT M+  MS TE+ KALN+Q+++GWTPLLIA +RGHMEL
Sbjct: 602 QTKQAQESAFHHCALAGNNEVLTEMISGMSATEVQKALNRQSAVGWTPLLIAAHRGHMEL 661

Query: 245 VNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVS----SGKSLKHSVMSF-RLPPHNIIP 299
           V T+L NHARVDVFD EGRSALHLAAEHGYL+V     + K+  +S     R   H    
Sbjct: 662 VTTLLANHARVDVFDLEGRSALHLAAEHGYLQVCDALLANKAFINSKSRVGRTALHLAAM 721

Query: 300 NG------FLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQK 353
           NG      FLV DH A ID+LTLRKQTPLHLAA AGQL+VCKLLL+LGASIDATDDQGQK
Sbjct: 722 NGYSHLVKFLVQDHGAAIDVLTLRKQTPLHLAAGAGQLEVCKLLLELGASIDATDDQGQK 781

Query: 354 PIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVI 413
           PIH AA NN+ EVAQ+FL+ HPSLV A TKDGNTCAHIAAMQGSV VIEELMKFDR GVI
Sbjct: 782 PIHAAAMNNYAEVAQLFLQRHPSLVMACTKDGNTCAHIAAMQGSVRVIEELMKFDRQGVI 841

Query: 414 SARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEM 473
           SARN++TEATPLQLAAEGGHA VV+ LV+AGASC DEN+ GFTAVHLAAQ+GH QVLE M
Sbjct: 842 SARNKLTEATPLQLAAEGGHAEVVKALVRAGASCADENRAGFTAVHLAAQHGHGQVLEVM 901

Query: 474 RSSKALNVYSKKLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESG 533
           RSS++L + SKKLGVTALHVAAYFGQADTVRELL++VPGTVKSDPPTG S +GELGSESG
Sbjct: 902 RSSQSLRISSKKLGVTALHVAAYFGQADTVRELLTNVPGTVKSDPPTGGSLVGELGSESG 961

Query: 534 MTPLHLAAYSGNENVVRLLLNSAGVQVDAQTQEN 567
           MTPLHLAAYSGNENVVRLLLNSAGVQV+A T EN
Sbjct: 962 MTPLHLAAYSGNENVVRLLLNSAGVQVEAATTEN 995

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350403217|ref|XP_003486733.1| PREDICTED: serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit C-like isoform 1 [Bombus impatiens]

 Score =  773 bits (1995), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 405/574 (70%), Positives = 454/574 (79%), Gaps = 42/574 (7%)

Query: 7   GKLRETPLHIAARVKDGDRCALMLLKSGAGPNLTNIAARVKDGDRCALMLLKSGAGPNLT 66
           GKLRETPLHIAARV                           DGDRCALMLLKSGAGPNLT
Sbjct: 451 GKLRETPLHIAARVP--------------------------DGDRCALMLLKSGAGPNLT 484

Query: 67  TDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVVDLLIQFV 126
           TDDGQTPVH AA +GNL TL LLLEDGGDPMYK+K GETPLHLA R CKA+VV  LI+FV
Sbjct: 485 TDDGQTPVHVAASHGNLTTLLLLLEDGGDPMYKSKNGETPLHLACRGCKADVVRHLIEFV 544

Query: 127 -QNISQEKVLEYVNSVNEDGASALHYACQVTKAEL-IPITSKEDQKTVKLLLEAGADVSL 184
            +    E    YVNS+  +GASALHYA Q+  +E+ IP    +D+  ++ LLE GADVSL
Sbjct: 545 KERKGPETATAYVNSLTNEGASALHYAAQIEPSEVEIP---GDDRAVIRALLEGGADVSL 601

Query: 185 QTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIACNRGHMEL 244
           QTKQ  E+AFH+CA+AGNN+VLT M+  MS TE+ KALN+Q+++GWTPLLIA +RGHMEL
Sbjct: 602 QTKQAQESAFHHCALAGNNEVLTEMISGMSATEVQKALNRQSAVGWTPLLIAAHRGHMEL 661

Query: 245 VNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVS----SGKSLKHSVMSF-RLPPHNIIP 299
           V T+L NHARVDVFD EGRSALHLAAEHGYL+V     + K+  +S     R   H    
Sbjct: 662 VTTLLANHARVDVFDLEGRSALHLAAEHGYLQVCDALLANKAFINSKSRVGRTALHLAAM 721

Query: 300 NG------FLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQK 353
           NG      FLV DH A ID+LTLRKQTPLHLAA AGQL+VCKLLL+LGASIDATDDQGQK
Sbjct: 722 NGYSHLVKFLVQDHGAAIDVLTLRKQTPLHLAAGAGQLEVCKLLLELGASIDATDDQGQK 781

Query: 354 PIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVI 413
           PIH AA NN+ EVAQ+FL+ HPSLV A TKDGNTCAHIAAMQGSV VIEELMKFDR GVI
Sbjct: 782 PIHAAAMNNYAEVAQLFLQRHPSLVMACTKDGNTCAHIAAMQGSVRVIEELMKFDRQGVI 841

Query: 414 SARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEM 473
           SARN++TEATPLQLAAEGGHA VV+ LV+AGASC DEN+ GFTAVHLAAQ+GH QVLE M
Sbjct: 842 SARNKLTEATPLQLAAEGGHAEVVKALVRAGASCADENRAGFTAVHLAAQHGHGQVLEVM 901

Query: 474 RSSKALNVYSKKLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESG 533
           RSS++L + SKKLGVTALHVAAYFGQADTVRELL++VPGTVKSDPPTG S +GELGSESG
Sbjct: 902 RSSQSLRISSKKLGVTALHVAAYFGQADTVRELLTNVPGTVKSDPPTGGSLVGELGSESG 961

Query: 534 MTPLHLAAYSGNENVVRLLLNSAGVQVDAQTQEN 567
           MTPLHLAAYSGNENVVRLLLNSAGVQV+A T EN
Sbjct: 962 MTPLHLAAYSGNENVVRLLLNSAGVQVEAATTEN 995

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345488328|ref|XP_001605939.2| PREDICTED: serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit B [Nasonia vitripennis]

 Score =  773 bits (1995), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 397/574 (69%), Positives = 452/574 (78%), Gaps = 41/574 (7%)

Query: 7    GKLRETPLHIAARVKDGDRCALMLLKSGAGPNLTNIAARVKDGDRCALMLLKSGAGPNLT 66
            GKLRETPLHIAARV                           DGDRCALMLLKSGAGPNL 
Sbjct: 472  GKLRETPLHIAARVP--------------------------DGDRCALMLLKSGAGPNLA 505

Query: 67   TDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVVDLLIQFV 126
            TDDGQTPVH AA +GNL TL+LLLEDGGDPM+K+K GETPLHLA R C+A+VV  LI+FV
Sbjct: 506  TDDGQTPVHVAASHGNLATLKLLLEDGGDPMFKSKNGETPLHLACRGCRADVVRHLIEFV 565

Query: 127  QNISQEKV-LEYVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGADVSLQ 185
            +      V   YVNS+  +GASALHYA Q+   E++     +D+  V+ LLE GADVSLQ
Sbjct: 566  KEKKGVDVATNYVNSLTFEGASALHYAAQIEPTEVV--VEGDDRAVVRALLEGGADVSLQ 623

Query: 186  TKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIACNRGHMELV 245
            TKQ  E+AFHYCA+AGNN+VL+ M+  MS TE+ KALN+Q+++GWTPLLIA +RGHM++V
Sbjct: 624  TKQAQESAFHYCALAGNNEVLSEMIGHMSATEVQKALNRQSAVGWTPLLIAAHRGHMDIV 683

Query: 246  NTMLNNHARVDVFDQEGRSALHLAAEHGYLKVS----SGKSLKHSVMSF-RLPPHNIIPN 300
              +L NHARVDVFD EGRSALHLAAEHGYL+V     + K+  +S     R   H    N
Sbjct: 684  KNLLENHARVDVFDLEGRSALHLAAEHGYLEVCDALLANKAFINSKSRVGRTALHLAAMN 743

Query: 301  G------FLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKP 354
            G      FLV DH A ID+LTLRKQTPLHLAA AGQLQVCKLLLDLGASIDATDDQGQKP
Sbjct: 744  GNTHLVRFLVQDHQAAIDVLTLRKQTPLHLAAGAGQLQVCKLLLDLGASIDATDDQGQKP 803

Query: 355  IHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVIS 414
            IH AA NN+ EVAQ+FL+ HPSLV A TKDGNTCAHIAAMQGSV VIEELMKFDR+GVI+
Sbjct: 804  IHAAAMNNYAEVAQLFLQKHPSLVMACTKDGNTCAHIAAMQGSVRVIEELMKFDRNGVIT 863

Query: 415  ARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLE-EM 473
            ARN++TEATPLQLAAEGGHA VVR LV+AGASC +EN+ GFTAVHLAAQ+GH QVL+  M
Sbjct: 864  ARNKLTEATPLQLAAEGGHAEVVRALVRAGASCAEENRAGFTAVHLAAQHGHGQVLDVMM 923

Query: 474  RSSKALNVYSKKLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESG 533
            RSS++L + SKKLGVTALHVAAYFGQADTVRELL+HVPGTVKS+PPTG S +GELG+ESG
Sbjct: 924  RSSQSLRISSKKLGVTALHVAAYFGQADTVRELLTHVPGTVKSEPPTGGSLVGELGNESG 983

Query: 534  MTPLHLAAYSGNENVVRLLLNSAGVQVDAQTQEN 567
            MTPLHLAAYSGNENVVRLLLNSAGVQV+A T EN
Sbjct: 984  MTPLHLAAYSGNENVVRLLLNSAGVQVEAATTEN 1017

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340728311|ref|XP_003402469.1| PREDICTED: serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit C-like isoform 3 [Bombus terrestris]

 Score =  771 bits (1991), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 405/574 (70%), Positives = 454/574 (79%), Gaps = 42/574 (7%)

Query: 7   GKLRETPLHIAARVKDGDRCALMLLKSGAGPNLTNIAARVKDGDRCALMLLKSGAGPNLT 66
           GKLRETPLHIAARV                           DGDRCALMLLKSGAGPNLT
Sbjct: 417 GKLRETPLHIAARVP--------------------------DGDRCALMLLKSGAGPNLT 450

Query: 67  TDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVVDLLIQFV 126
           TDDGQTPVH AA +GNL TL LLLEDGGDPMYK+K GETPLHLA R CKA+VV  LI+FV
Sbjct: 451 TDDGQTPVHVAASHGNLTTLLLLLEDGGDPMYKSKNGETPLHLACRGCKADVVRHLIEFV 510

Query: 127 -QNISQEKVLEYVNSVNEDGASALHYACQVTKAEL-IPITSKEDQKTVKLLLEAGADVSL 184
            +    E    YVNS+  +GASALHYA Q+  +E+ IP    +D+  ++ LLE GADVSL
Sbjct: 511 KERKGPETATAYVNSLTNEGASALHYAAQIEPSEVEIP---GDDRAVIRALLEGGADVSL 567

Query: 185 QTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIACNRGHMEL 244
           QTKQ  E+AFH+CA+AGNN+VLT M+  MS TE+ KALN+Q+++GWTPLLIA +RGHMEL
Sbjct: 568 QTKQAQESAFHHCALAGNNEVLTEMISGMSATEVQKALNRQSAVGWTPLLIAAHRGHMEL 627

Query: 245 VNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVS----SGKSLKHSVMSF-RLPPHNIIP 299
           V T+L NHARVDVFD EGRSALHLAAEHGYL+V     + K+  +S     R   H    
Sbjct: 628 VTTLLANHARVDVFDLEGRSALHLAAEHGYLQVCDALLANKAFINSKSRVGRTALHLAAM 687

Query: 300 NG------FLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQK 353
           NG      FLV DH A ID+LTLRKQTPLHLAA AGQL+VCKLLL+LGASIDATDDQGQK
Sbjct: 688 NGYSHLVKFLVQDHGAAIDVLTLRKQTPLHLAAGAGQLEVCKLLLELGASIDATDDQGQK 747

Query: 354 PIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVI 413
           PIH AA NN+ EVAQ+FL+ HPSLV A TKDGNTCAHIAAMQGSV VIEELMKFDR GVI
Sbjct: 748 PIHAAAMNNYAEVAQLFLQRHPSLVMACTKDGNTCAHIAAMQGSVRVIEELMKFDRQGVI 807

Query: 414 SARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEM 473
           SARN++TEATPLQLAAEGGHA VV+ LV+AGASC DEN+ GFTAVHLAAQ+GH QVLE M
Sbjct: 808 SARNKLTEATPLQLAAEGGHAEVVKALVRAGASCADENRAGFTAVHLAAQHGHGQVLEVM 867

Query: 474 RSSKALNVYSKKLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESG 533
           RSS++L + SKKLGVTALHVAAYFGQADTVRELL++VPGTVKSDPPTG S +GELGSESG
Sbjct: 868 RSSQSLRISSKKLGVTALHVAAYFGQADTVRELLTNVPGTVKSDPPTGGSLVGELGSESG 927

Query: 534 MTPLHLAAYSGNENVVRLLLNSAGVQVDAQTQEN 567
           MTPLHLAAYSGNENVVRLLLNSAGVQV+A T EN
Sbjct: 928 MTPLHLAAYSGNENVVRLLLNSAGVQVEAATTEN 961

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350403222|ref|XP_003486734.1| PREDICTED: serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit C-like isoform 2 [Bombus impatiens]

 Score =  771 bits (1991), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 405/574 (70%), Positives = 454/574 (79%), Gaps = 42/574 (7%)

Query: 7   GKLRETPLHIAARVKDGDRCALMLLKSGAGPNLTNIAARVKDGDRCALMLLKSGAGPNLT 66
           GKLRETPLHIAARV                           DGDRCALMLLKSGAGPNLT
Sbjct: 417 GKLRETPLHIAARVP--------------------------DGDRCALMLLKSGAGPNLT 450

Query: 67  TDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVVDLLIQFV 126
           TDDGQTPVH AA +GNL TL LLLEDGGDPMYK+K GETPLHLA R CKA+VV  LI+FV
Sbjct: 451 TDDGQTPVHVAASHGNLTTLLLLLEDGGDPMYKSKNGETPLHLACRGCKADVVRHLIEFV 510

Query: 127 -QNISQEKVLEYVNSVNEDGASALHYACQVTKAEL-IPITSKEDQKTVKLLLEAGADVSL 184
            +    E    YVNS+  +GASALHYA Q+  +E+ IP    +D+  ++ LLE GADVSL
Sbjct: 511 KERKGPETATAYVNSLTNEGASALHYAAQIEPSEVEIP---GDDRAVIRALLEGGADVSL 567

Query: 185 QTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIACNRGHMEL 244
           QTKQ  E+AFH+CA+AGNN+VLT M+  MS TE+ KALN+Q+++GWTPLLIA +RGHMEL
Sbjct: 568 QTKQAQESAFHHCALAGNNEVLTEMISGMSATEVQKALNRQSAVGWTPLLIAAHRGHMEL 627

Query: 245 VNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVS----SGKSLKHSVMSF-RLPPHNIIP 299
           V T+L NHARVDVFD EGRSALHLAAEHGYL+V     + K+  +S     R   H    
Sbjct: 628 VTTLLANHARVDVFDLEGRSALHLAAEHGYLQVCDALLANKAFINSKSRVGRTALHLAAM 687

Query: 300 NG------FLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQK 353
           NG      FLV DH A ID+LTLRKQTPLHLAA AGQL+VCKLLL+LGASIDATDDQGQK
Sbjct: 688 NGYSHLVKFLVQDHGAAIDVLTLRKQTPLHLAAGAGQLEVCKLLLELGASIDATDDQGQK 747

Query: 354 PIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVI 413
           PIH AA NN+ EVAQ+FL+ HPSLV A TKDGNTCAHIAAMQGSV VIEELMKFDR GVI
Sbjct: 748 PIHAAAMNNYAEVAQLFLQRHPSLVMACTKDGNTCAHIAAMQGSVRVIEELMKFDRQGVI 807

Query: 414 SARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEM 473
           SARN++TEATPLQLAAEGGHA VV+ LV+AGASC DEN+ GFTAVHLAAQ+GH QVLE M
Sbjct: 808 SARNKLTEATPLQLAAEGGHAEVVKALVRAGASCADENRAGFTAVHLAAQHGHGQVLEVM 867

Query: 474 RSSKALNVYSKKLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESG 533
           RSS++L + SKKLGVTALHVAAYFGQADTVRELL++VPGTVKSDPPTG S +GELGSESG
Sbjct: 868 RSSQSLRISSKKLGVTALHVAAYFGQADTVRELLTNVPGTVKSDPPTGGSLVGELGSESG 927

Query: 534 MTPLHLAAYSGNENVVRLLLNSAGVQVDAQTQEN 567
           MTPLHLAAYSGNENVVRLLLNSAGVQV+A T EN
Sbjct: 928 MTPLHLAAYSGNENVVRLLLNSAGVQVEAATTEN 961

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	567
FB|FBgn0016920	1726	nompC "no mechanoreceptor pote	0.924	0.303	0.698	3.5e-194
ZFIN|ZDB-GENE-030728-7	1614	trpn1 "transient receptor pote	0.918	0.322	0.471	1.1e-121
WB|WBGene00006616	1924	trp-4 [Caenorhabditis elegans	0.925	0.272	0.429	1.1e-108
ZFIN|ZDB-GENE-081104-19	1929	si:ch211-173b16.3 "si:ch211-17	0.925	0.272	0.305	4e-47
UNIPROTKB|F1MY81	1136	ANK1 "Uncharacterized protein"	0.878	0.438	0.315	8.2e-47
UNIPROTKB|F1PRD8	1857	ANK1 "Uncharacterized protein"	0.878	0.268	0.318	1e-46
UNIPROTKB|F1PRC8	1916	ANK1 "Uncharacterized protein"	0.878	0.259	0.318	1.1e-46
UNIPROTKB|F1SE30	1885	ANK1 "Uncharacterized protein"	0.878	0.264	0.313	2.2e-46
MGI|MGI:88024	1862	Ank1 "ankyrin 1, erythroid" [M	0.878	0.267	0.311	6.6e-45
RGD|1309620	1864	Ank1 "ankyrin 1, erythrocytic"	0.878	0.267	0.311	1.4e-44

FB|FBgn0016920 nompC "no mechanoreceptor potential C" [Drosophila melanogaster (taxid:7227)]

 Score = 1881 (667.2 bits), Expect = 3.5e-194, P = 3.5e-194
 Identities = 377/540 (69%), Positives = 442/540 (81%)

Query:    41 NIAARVKDGDRCALMLLKSGAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKN 100
             +IAARVKDGDRCALMLLKSGA PNLTTDD  TPVH AA++GNL TL  LLED GDP+YK+
Sbjct:   473 HIAARVKDGDRCALMLLKSGASPNLTTDDCLTPVHVAARHGNLATLMQLLEDEGDPLYKS 532

Query:   101 KIGETPLHLASRNCKAEVVDLLIQFV-QNISQEKVLEYVNSVNEDGASALHYACQVTKAE 159
               GETPLH+A R C  ++V  LI+ V +    +K   Y+NSVNEDGA+ALHY CQ+TK E
Sbjct:   533 NTGETPLHMACRACHPDIVRHLIETVKEKHGPDKATTYINSVNEDGATALHYTCQITKEE 592

Query:   160 L-IPITSKEDQKTVKLLLEAGADVSLQTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEI 218
             + IP   + D++ V++LLE GADV+LQTK   ETAFHYCAVAGNNDVL  M+  M+ T+I
Sbjct:   593 VKIP---ESDKQIVRMLLENGADVTLQTKTALETAFHYCAVAGNNDVLMEMISHMNPTDI 649

Query:   219 SKALNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVS 278
              KA+N+Q+S+GWTPLLIAC+RGHMELVN +L NHARVDVFD EGRSALHLAAE GYL V 
Sbjct:   650 QKAMNRQSSVGWTPLLIACHRGHMELVNNLLANHARVDVFDTEGRSALHLAAERGYLHVC 709

Query:   279 ----SGKSLKHSVMSF-RLPPHNIIPNGF------LVHDHAAVIDILTLRKQTPLHLAAE 327
                 + K+  +S     R   H    NGF      L+ DH AVIDILTLRKQTPLHLAA 
Sbjct:   710 DALLTNKAFINSKSRVGRTALHLAAMNGFTHLVKFLIKDHNAVIDILTLRKQTPLHLAAA 769

Query:   328 AGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNT 387
             +GQ++VC+LLL+LGA+IDATDD GQKPIHVAAQNN+ EVA++FL+ HPSLV AT+KDGNT
Sbjct:   770 SGQMEVCQLLLELGANIDATDDLGQKPIHVAAQNNYSEVAKLFLQQHPSLVNATSKDGNT 829

Query:   388 CAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASC 447
             CAHIAAMQGSV VIEELMKFDRSGVISARN++T+ATPLQLAAEGGHA+VV+ LV+AGASC
Sbjct:   830 CAHIAAMQGSVKVIEELMKFDRSGVISARNKLTDATPLQLAAEGGHADVVKALVRAGASC 889

Query:   448 TDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLGVTALHVAAYFGQADTVRELL 507
             T+ENK GFTAVHLAAQNGH QVL+ ++S+ +L + SKKLG+T LHVAAY+GQADTVRELL
Sbjct:   890 TEENKAGFTAVHLAAQNGHGQVLDVLKSTNSLRINSKKLGLTPLHVAAYYGQADTVRELL 949

Query:   508 SHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVRLLLNSAGVQVDAQTQEN 567
             + VP TVKS+ PTG S  G+LG+ESGMTPLHLAA+SGNENVVRLLLNSAGVQVDA T EN
Sbjct:   950 TSVPATVKSETPTGQSLFGDLGTESGMTPLHLAAFSGNENVVRLLLNSAGVQVDAATIEN 1009

GO:0005262 "calcium channel activity" evidence=IEA;ISS

GO:0006816 "calcium ion transport" evidence=ISS

GO:0007638 "mechanosensory behavior" evidence=IMP

GO:0005216 "ion channel activity" evidence=ISS

GO:0008381 "mechanically-gated ion channel activity" evidence=NAS;TAS

GO:0050954 "sensory perception of mechanical stimulus" evidence=NAS

GO:0007605 "sensory perception of sound" evidence=IMP

GO:0008092 "cytoskeletal protein binding" evidence=ISS

GO:0030506 "ankyrin binding" evidence=NAS

GO:0050974 "detection of mechanical stimulus involved in sensory perception" evidence=TAS

GO:0070588 "calcium ion transmembrane transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0005929 "cilium" evidence=IDA

GO:0040011 "locomotion" evidence=IMP

GO:0050975 "sensory perception of touch" evidence=IMP

ZFIN|ZDB-GENE-030728-7 trpn1 "transient receptor potential cation channel, subfamily N, member 1" [Danio rerio (taxid:7955)]

 Score = 1197 (426.4 bits), Expect = 1.1e-121, P = 1.1e-121
 Identities = 255/541 (47%), Positives = 360/541 (66%)

Query:    41 NIAARVKDGDRCALMLLKSGAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKN 100
             +I+ARVK+G+R A MLLKSGA  N   ++G+T +H AA++G+L  ++ L+++GGDP +++
Sbjct:   392 HISARVKEGERAAEMLLKSGAEVNAEQENGETALHVAARHGSLQMIRALIQEGGDPRWRS 451

Query:   101 KIGETPLHLASRNCKAEVVDLLIQFVQNISQEKVLEY-VNSVNEDGASALHYACQV-TKA 158
             ++GE+PLH+A R+C A VV  ++ F+ N    +  E  V   N+DG +ALH A ++ T A
Sbjct:   452 RVGESPLHVAVRHCHAHVVQEILTFLTNEKSRRDAELCVCEGNQDGETALHLAAELRTDA 511

Query:   159 ELIPITSKEDQKTVKLLLEAGADVSLQTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEI 218
                P   +ED   +++L+E  AD++  T+Q  ET  HY A  GN  VL  ML  +   +I
Sbjct:   512 LHQP---EEDITIIQILMEHQADITAVTRQTGETPLHYSARVGNTAVLQEMLRNVPTNQI 568

Query:   219 SKALNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVS 278
               A+NK +  GW+PLL+A ++GH E+V  +L N+ARVDVFD+EG++A+HLAA+ G+  + 
Sbjct:   569 QTAINKHSKNGWSPLLLAADQGHTEVVKILLQNNARVDVFDEEGKAAIHLAAQRGHQDIV 628

Query:   279 ----SGKSLKHSVMSFRLPP-HNIIPNG------FLVHDHAAVIDILTLRKQTPLHLAAE 327
                 S K+  ++     L P H    NG       LV +H A +D L+LRKQTPLHLAA 
Sbjct:   629 DVLLSQKAFVNAKTKQGLTPLHLSAQNGSARLVRLLVENHQASVDALSLRKQTPLHLAAM 688

Query:   328 AGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNT 387
             +GQL VC  LL+L A I ATD +GQ P+H+AA+++  EV ++FLR  P L T   +DG+T
Sbjct:   689 SGQLDVCSSLLNLRADITATDSRGQTPLHLAAESDHSEVVKLFLRLRPELSTLANEDGST 748

Query:   388 CAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASC 447
             C HIAA +GSV VI EL+ F++ GV +  ++     PL LAA GGHA VV+VL++AGAS 
Sbjct:   749 CTHIAAAKGSVSVIRELLMFNQGGVGTLNHKAHGLCPLHLAAAGGHAEVVKVLLEAGASV 808

Query:   448 TDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLGVTALHVAAYFGQADTVRELL 507
             T+E+  G TAVHLAA++GH  +LE +R S  L + S K G TALHVAA FGQ + VRE+L
Sbjct:   809 TEEDAEGMTAVHLAAKHGHTHILEVLRGSVPLKIQSSKTGFTALHVAASFGQMNFVREIL 868

Query:   508 SHVPGTVKSDPPT--GASFLGELG--SESGMTPLHLAAYSGNENVVRLLLNSAGVQVDAQ 563
             + VP T++S+ PT  G   +      +ESG TPLHLA+ SG+E+VVRLLLN  GVQ DA+
Sbjct:   869 TKVPATIRSEFPTISGKDDIKRQQPLAESGFTPLHLASQSGHESVVRLLLNCPGVQADAE 928

Query:   564 T 564
             T
Sbjct:   929 T 929

GO:0070588 "calcium ion transmembrane transport" evidence=IEA

GO:0006811 "ion transport" evidence=IEA

GO:0005216 "ion channel activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005262 "calcium channel activity" evidence=IEA

GO:0008381 "mechanically-gated ion channel activity" evidence=ISS

GO:0007605 "sensory perception of sound" evidence=IMP

GO:0050910 "detection of mechanical stimulus involved in sensory perception of sound" evidence=IMP

GO:0006810 "transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

WB|WBGene00006616 trp-4 [Caenorhabditis elegans (taxid:6239)]

 Score = 1085 (387.0 bits), Expect = 1.1e-108, P = 1.1e-108
 Identities = 238/554 (42%), Positives = 348/554 (62%)

Query:    31 LKSGA-GPNLTNIAARVKDGDR--CALMLLKSGAGPNLTTDDGQTPVHAAAKYGNLVTLQ 87
             +K G  G    +IAA +   +   CA+MLLKSG  P++   DG+T +H AA+ GN   ++
Sbjct:   687 VKGGELGQTALHIAASLNGAESRDCAMMLLKSGGQPDVAQMDGETCLHIAARSGNKDIMR 746

Query:    88 LLLEDGGDPMYKNKIGETPLHLASRNCKAEVVDLLIQFVQNI-SQEKVLEYVNSVNEDGA 146
             LLL++  D    +KIGETPL +A+++C  E   ++++ +  + +QE++ E+VN    DG 
Sbjct:   747 LLLDENADSKISSKIGETPLQVAAKSCNFEAASMILKHLSEVLTQEQLKEHVNHRTNDGF 806

Query:   147 SALHYACQVTKAEL-IPITSKEDQKTVKLLLEAGADVSLQTKQNHETAFHYCAVAGNNDV 205
             +ALHYA ++ + +L  P    ED K V LL++ G  V + +   +ETA H  A +GN  V
Sbjct:   807 TALHYAAEIEQRQLHFP---GEDAKLVNLLIDYGGMVEMPSLNANETAMHMAARSGNQAV 863

Query:   206 LTGMLEQMSGTEISKALNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSA 265
             L  M+ ++    +    NKQ+  GW+PLL AC RGH  + N +L +HAR+DVFD+ GR+A
Sbjct:   864 LLAMVNKIGAGAVQIVQNKQSKNGWSPLLEACARGHSGVANILLKHHARIDVFDEMGRTA 923

Query:   266 LHLAAEHGYLKVSSGKSLKHSVM------SFRLPPHNIIPNGF------LVHDHAAVIDI 313
             LHLAA +G+L +     L+H         +   P H    +G       LV DH A ++ 
Sbjct:   924 LHLAAFNGHLSLVH-LLLQHKAFVNSKSKTGEAPLHLAAQHGHVKVVNVLVQDHGAALEA 982

Query:   314 LTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRA 373
             +TL  QT LH AA+ GQL V + LL LGA+ +A DD+GQ P+H+AA+N+FP+V ++FL+ 
Sbjct:   983 ITLDNQTALHFAAKFGQLAVSQTLLALGANPNARDDKGQTPLHLAAENDFPDVVKLFLKM 1042

Query:   374 ---HPSLVTATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAE 430
                + S++TA   +G TCAHIAAM+GS+ V+ ELM  D+  VI A+ +  EAT L +AA 
Sbjct:  1043 RNNNRSVLTAIDHNGFTCAHIAAMKGSLAVVRELMMIDKPMVIQAKTKTLEATTLHMAAA 1102

Query:   431 GGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKAL-NVYSKKLGVT 489
             GGHAN+V++L++ GA+  DEN  G TA+HL A+NG   +LE     K L    S+K G+ 
Sbjct:  1103 GGHANIVKILLENGANAEDENSHGMTALHLGAKNGFISILEAF--DKILWKRCSRKTGLN 1160

Query:   490 ALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLG-ELGSESGMTPLHLAAYSGNENV 548
             ALH+AA++G +D V E+L HV  TV+S+PP     +  E  +E G TPLHLAA SG++++
Sbjct:  1161 ALHIAAFYGNSDFVNEMLKHVQATVRSEPPIYNHHVNKEFSTEYGFTPLHLAAQSGHDSL 1220

Query:   549 VRLLLNSAGVQVDA 562
             VR+LLN  GVQVDA
Sbjct:  1221 VRMLLNQ-GVQVDA 1233

GO:0005262 "calcium channel activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0070588 "calcium ion transmembrane transport" evidence=IEA

GO:0005216 "ion channel activity" evidence=IEA

GO:0006811 "ion transport" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

ZFIN|ZDB-GENE-081104-19 si:ch211-173b16.3 "si:ch211-173b16.3" [Danio rerio (taxid:7955)]

 Score = 508 (183.9 bits), Expect = 4.0e-47, P = 4.0e-47
 Identities = 178/582 (30%), Positives = 280/582 (48%)

Query:    12 TPLHIAARVKDGDRCALMLLKSGAG----PNLTNIAARVKDGDRCALMLLKSGAGPNLTT 67
             TPL +A +    +  AL++     G    P L +IAAR  D  R A +LL++   P++ +
Sbjct:   140 TPLAVALQQGHENVVALLINHGTKGKVRLPAL-HIAAR-NDDTRTAAVLLQNDPNPDVLS 197

Query:    68 DDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVVDLLIQFVQ 127
               G TP+H AA Y NL   QLLL  G D  +  K G TPLH+ASR     +V LL+    
Sbjct:   198 KTGFTPLHIAAHYENLNVAQLLLNRGADVNFTPKNGITPLHIASRRGNVIMVRLLLDRGA 257

Query:   128 NISQEKVLEY--VNSVNEDG-----ASALHYACQV---TKAELIPI--TSKEDQ-KTVKL 174
              I  +   E   ++    +G        L     +   TK  L PI   ++ D    ++ 
Sbjct:   258 KIDAKTKDELTPLHCAARNGHVRIIEILLDQGAPIQAKTKNGLSPIHMAAQGDHLDCIRQ 317

Query:   175 LLEAGADVSLQTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLL 234
             LL+  A++   T  +H T  H  A  G++ V   +L++ +    ++ALN     G+TPL 
Sbjct:   318 LLQYNAEIDDITL-DHLTPLHVAAHCGHHRVAKVLLDKGAKPN-TRALN-----GFTPLH 370

Query:   235 IACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKV-----SSGKSLKHSVMS 289
             IAC + HM +++ +L + A ++   + G + LH+++  G+L +       G S   S + 
Sbjct:   371 IACKKNHMRVMDLLLKHSASLEAVTESGLTPLHVSSFMGHLNIVKILMQKGASPNASNVK 430

Query:   290 FRLPPHNIIPNG-----FLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASI 344
                P H     G     FL+ + AA +D      QTPLH A+  G  ++ KLLL+  A+ 
Sbjct:   431 VETPLHMASRAGHCEVEFLLQN-AAPVDAKAKDDQTPLHCASRMGHNEMVKLLLEHKANS 489

Query:   345 DATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIEEL 404
             ++T   G  P+H+AA+    + A I L  +  L T  TK G T  H+AA  G V V   L
Sbjct:   490 NSTTTAGHTPLHIAAREGHTQTASILLDMNAQL-TKMTKKGFTPLHVAAKYGKVDVAVLL 548

Query:   405 MKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQN 464
             +  +R    +A  +V   TPL +A    + +VV +L+  G S     + G+T +H+A++ 
Sbjct:   549 L--ERGANPNAAGKVG-LTPLHVAVHHNNLDVVNLLLSKGGSPHSAARNGYTPLHIASKQ 605

Query:   465 GHNQVLEEM-RSSKALNVYSKKLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGAS 523
                +V   + +   + N  S + GVT LH+A+  GQ D V  L+S               
Sbjct:   606 NQAEVASSLLQHGASANAESLQ-GVTPLHLASQEGQPDMVLLLISKQANV---------- 654

Query:   524 FLGELGSESGMTPLHLAAYSGNENVVRLLLNSAGVQVDAQTQ 565
                 LG++SG+TPLHL A  G+  +  +L+   G  V A T+
Sbjct:   655 ---NLGNKSGLTPLHLVAQEGHVGIADILVKH-GASVYAATR 692

GO:0007165 "signal transduction" evidence=IEA

UNIPROTKB|F1MY81 ANK1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 501 (181.4 bits), Expect = 8.2e-47, P = 8.2e-47
 Identities = 173/549 (31%), Positives = 264/549 (48%)

Query:    41 NIAARVKDGDRCALMLLKSGAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKN 100
             +IAAR  D  R A +LL++   P++ +  G TP+H AA Y NL   QLLL  G    +  
Sbjct:   177 HIAAR-NDDTRTAAVLLQNDPNPDVLSKTGFTPLHIAAHYENLNVAQLLLNRGASVNFTP 235

Query:   101 KIGETPLHLASRNCKAEVVDLLIQFVQNISQ--EKVLEYVNSVNEDGASAL------HYA 152
             + G TPLH+ASR     +V LL+     I    +  L  ++    +G   +      H A
Sbjct:   236 QNGITPLHIASRRGNVIMVRLLLDRGAQIETRTKDELTPLHCAARNGHLRISEILLDHGA 295

Query:   153 -CQV-TKAELIPI--TSKEDQ-KTVKLLLEAGADVSLQTKQNHETAFHYCAVAGNNDVLT 207
               Q  TK  L PI   ++ D    V+LLL+  A++   T  +H T  H  A  G++ V  
Sbjct:   296 PIQAKTKNGLSPIHMAAQGDHLDCVRLLLQYNAEIDDITL-DHLTPLHVAAHCGHHRVAK 354

Query:   208 GMLEQMSGTEISKALNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALH 267
              +L++ +    S+ALN     G+TPL IAC + H+ ++  +L   A +D   + G + LH
Sbjct:   355 VLLDKGAKPN-SRALN-----GFTPLHIACKKNHIRVMELLLKMGASIDAVTESGLTPLH 408

Query:   268 LAAEHGYLKVSSG---KSLKHSVMSFRL--PPHNIIPNGFL-----VHDHAAVIDILTLR 317
             +A+  G+L +      +    +V + ++  P H     G       +  + A ++     
Sbjct:   409 VASFMGHLPIVKSLLQREASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKD 468

Query:   318 KQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSL 377
              QTPLH AA  G   + KLLL+  A+ +     G  P+H+AA+    E A   L    S 
Sbjct:   469 DQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETALALLEKEASQ 528

Query:   378 VTATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVV 437
              T  TK G T  H+AA  G V + E L++ D     + ++ +T   PL +A    H +VV
Sbjct:   529 -TCMTKKGFTPLHVAAKYGKVRMAELLLEHDAHPNAAGKSGLT---PLHVAVHHNHLDVV 584

Query:   438 RVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEM-RSSKALNVYSKKLGVTALHVAAY 496
             R+L+  G S       G+T +H+AA+    +V   + +   + N  S + GVT LH+AA 
Sbjct:   585 RLLLPRGGSPHSPALNGYTPLHIAAKQNQLEVARSLLQYGGSANAESVQ-GVTPLHLAAQ 643

Query:   497 FGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVRLLLNSA 556
              G A+ V  LLS                 G LG++SG+TPLHL A  G+  V  +L+   
Sbjct:   644 EGHAEMVALLLSKQAN-------------GNLGNKSGLTPLHLVAQEGHIPVADVLIKH- 689

Query:   557 GVQVDAQTQ 565
             GV VDA T+
Sbjct:   690 GVTVDATTR 698

GO:0072661 "protein targeting to plasma membrane" evidence=IEA

GO:0051117 "ATPase binding" evidence=IEA

GO:0048821 "erythrocyte development" evidence=IEA

GO:0030863 "cortical cytoskeleton" evidence=IEA

GO:0030507 "spectrin binding" evidence=IEA

GO:0015672 "monovalent inorganic cation transport" evidence=IEA

GO:0014731 "spectrin-associated cytoskeleton" evidence=IEA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IEA

GO:0006779 "porphyrin-containing compound biosynthetic process" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

UNIPROTKB|F1PRD8 ANK1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 504 (182.5 bits), Expect = 1.0e-46, P = 1.0e-46
 Identities = 175/549 (31%), Positives = 260/549 (47%)

Query:    41 NIAARVKDGDRCALMLLKSGAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKN 100
             +IAAR  D  R A +LL++   P++ +  G TP+H AA Y NL   QLLL  G    +  
Sbjct:   172 HIAAR-NDDTRTAAVLLQNDPNPDVLSKTGFTPLHIAAHYENLNVAQLLLNRGASVNFTP 230

Query:   101 KIGETPLHLASRNCKAEVVDLLIQFVQNISQ--EKVLEYVNSVNEDGASAL------HYA 152
             + G TPLH+ASR     +V LL+     I    +  L  ++    +G   +      H A
Sbjct:   231 QNGITPLHIASRRGNVIMVRLLLDRGAQIETRTKDELTPLHCAARNGHVRISEILLDHGA 290

Query:   153 -CQV-TKAELIPI--TSKEDQ-KTVKLLLEAGADVSLQTKQNHETAFHYCAVAGNNDVLT 207
               Q  TK  L PI   ++ D    V+LLL+  A++   T  +H T  H  A  G++ V  
Sbjct:   291 PIQAKTKNGLSPIHMAAQGDHLDCVRLLLQYNAEIDDITL-DHLTPLHVAAHCGHHRVAK 349

Query:   208 GMLEQMSGTEISKALNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALH 267
              +L++ +    S+ALN     G+TPL IAC + H+ ++  +L   A +D   + G + LH
Sbjct:   350 VLLDKGAKPN-SRALN-----GFTPLHIACKKNHIRVMELLLKTGASIDAVTESGLTPLH 403

Query:   268 LAAEHGYLKV-----SSGKSLKHSVMSFRLPPHNIIPNGFL-----VHDHAAVIDILTLR 317
             +A+  G+L +       G S   S +    P H     G       +  + A ++     
Sbjct:   404 VASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKD 463

Query:   318 KQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSL 377
              QTPLH AA  G   + KLLL+  A+ +     G  P+H+AA+    E A   L    S 
Sbjct:   464 DQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGQVETALALLEKEASQ 523

Query:   378 VTATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVV 437
                 TK G T  H+AA  G V V E L+  D     + +N +T   PL +A    H ++V
Sbjct:   524 A-CMTKKGFTPLHVAAKYGKVRVAELLLGRDAHPNAAGKNGLT---PLHVAVHHNHLDIV 579

Query:   438 RVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEM-RSSKALNVYSKKLGVTALHVAAY 496
             R+L+  G S       G+T +H+AA+    +V   + +   + N  S + GVT LH+AA 
Sbjct:   580 RLLLPRGGSPHSPAWNGYTPLHIAAKQNQMEVARSLLQYGGSANAESVQ-GVTPLHLAAQ 638

Query:   497 FGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVRLLLNSA 556
              G A+ V  LLS                 G LG++SG+TPLHL A  G+  V  +L+   
Sbjct:   639 EGHAEMVALLLSKQAN-------------GNLGNKSGLTPLHLVAQEGHVPVADVLIKH- 684

Query:   557 GVQVDAQTQ 565
             GV VDA T+
Sbjct:   685 GVTVDATTR 693

GO:0007165 "signal transduction" evidence=IEA

UNIPROTKB|F1PRC8 ANK1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 504 (182.5 bits), Expect = 1.1e-46, P = 1.1e-46
 Identities = 175/549 (31%), Positives = 260/549 (47%)

Query:    41 NIAARVKDGDRCALMLLKSGAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKN 100
             +IAAR  D  R A +LL++   P++ +  G TP+H AA Y NL   QLLL  G    +  
Sbjct:   182 HIAAR-NDDTRTAAVLLQNDPNPDVLSKTGFTPLHIAAHYENLNVAQLLLNRGASVNFTP 240

Query:   101 KIGETPLHLASRNCKAEVVDLLIQFVQNISQ--EKVLEYVNSVNEDGASAL------HYA 152
             + G TPLH+ASR     +V LL+     I    +  L  ++    +G   +      H A
Sbjct:   241 QNGITPLHIASRRGNVIMVRLLLDRGAQIETRTKDELTPLHCAARNGHVRISEILLDHGA 300

Query:   153 -CQV-TKAELIPI--TSKEDQ-KTVKLLLEAGADVSLQTKQNHETAFHYCAVAGNNDVLT 207
               Q  TK  L PI   ++ D    V+LLL+  A++   T  +H T  H  A  G++ V  
Sbjct:   301 PIQAKTKNGLSPIHMAAQGDHLDCVRLLLQYNAEIDDITL-DHLTPLHVAAHCGHHRVAK 359

Query:   208 GMLEQMSGTEISKALNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALH 267
              +L++ +    S+ALN     G+TPL IAC + H+ ++  +L   A +D   + G + LH
Sbjct:   360 VLLDKGAKPN-SRALN-----GFTPLHIACKKNHIRVMELLLKTGASIDAVTESGLTPLH 413

Query:   268 LAAEHGYLKV-----SSGKSLKHSVMSFRLPPHNIIPNGFL-----VHDHAAVIDILTLR 317
             +A+  G+L +       G S   S +    P H     G       +  + A ++     
Sbjct:   414 VASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKD 473

Query:   318 KQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSL 377
              QTPLH AA  G   + KLLL+  A+ +     G  P+H+AA+    E A   L    S 
Sbjct:   474 DQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGQVETALALLEKEASQ 533

Query:   378 VTATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVV 437
                 TK G T  H+AA  G V V E L+  D     + +N +T   PL +A    H ++V
Sbjct:   534 A-CMTKKGFTPLHVAAKYGKVRVAELLLGRDAHPNAAGKNGLT---PLHVAVHHNHLDIV 589

Query:   438 RVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEM-RSSKALNVYSKKLGVTALHVAAY 496
             R+L+  G S       G+T +H+AA+    +V   + +   + N  S + GVT LH+AA 
Sbjct:   590 RLLLPRGGSPHSPAWNGYTPLHIAAKQNQMEVARSLLQYGGSANAESVQ-GVTPLHLAAQ 648

Query:   497 FGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVRLLLNSA 556
              G A+ V  LLS                 G LG++SG+TPLHL A  G+  V  +L+   
Sbjct:   649 EGHAEMVALLLSKQAN-------------GNLGNKSGLTPLHLVAQEGHVPVADVLIKH- 694

Query:   557 GVQVDAQTQ 565
             GV VDA T+
Sbjct:   695 GVTVDATTR 703

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IMP

GO:0005622 "intracellular" evidence=IMP

GO:0072661 "protein targeting to plasma membrane" evidence=IMP

GO:0007165 "signal transduction" evidence=IEA

UNIPROTKB|F1SE30 ANK1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 501 (181.4 bits), Expect = 2.2e-46, P = 2.2e-46
 Identities = 172/549 (31%), Positives = 263/549 (47%)

Query:    41 NIAARVKDGDRCALMLLKSGAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKN 100
             +IAAR  D  R A +LL++   P++ +  G TP+H AA Y NL   QLLL  G    +  
Sbjct:   211 HIAAR-NDDTRTAAVLLQNDPNPDVLSKTGFTPLHIAAHYENLNVAQLLLNRGASVNFTP 269

Query:   101 KIGETPLHLASRNCKAEVVDLLIQFVQNISQ--EKVLEYVNSVNEDGASAL------HYA 152
             + G TPLH+ASR     +V LL+     I    +  L  ++    +G   +      H A
Sbjct:   270 QNGITPLHIASRRGNVIMVRLLLDRGAQIETRTKDELTPLHCAARNGHLRISEILLDHGA 329

Query:   153 -CQV-TKAELIPI--TSKEDQ-KTVKLLLEAGADVSLQTKQNHETAFHYCAVAGNNDVLT 207
               Q  TK  L PI   ++ D    V+LLL+  A++   T  +H T  H  A  G++ V  
Sbjct:   330 PIQAKTKNGLSPIHMAAQGDHLDCVRLLLQYNAEIDDITL-DHLTPLHVAAHCGHHRVAK 388

Query:   208 GMLEQMSGTEISKALNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALH 267
              +L++ +    S+ALN     G+TPL IAC + H+ ++  +L   A +D   + G + LH
Sbjct:   389 VLLDKGAKPN-SRALN-----GFTPLHIACKKNHIRVMELLLKTGASIDAVTESGLTPLH 442

Query:   268 LAAEHGYLKVSSG---KSLKHSVMSFRL--PPHNIIPNGFL-----VHDHAAVIDILTLR 317
             +A+  G+L +      +    +V + ++  P H     G       +  + A ++     
Sbjct:   443 VASFMGHLPIVKNLLQRDASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKD 502

Query:   318 KQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSL 377
              QTPLH AA  G   + KLLL+  A+ +     G  P+H+AA+    E A   L    S 
Sbjct:   503 DQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETALALLEKGASQ 562

Query:   378 VTATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVV 437
                 TK G T  H+AA  G V V E L++ D     + +N +T   PL +A    H ++V
Sbjct:   563 A-CMTKKGFTPLHVAAKYGKVRVAELLLEHDAHPNAAGKNGLT---PLHVAVHHNHLDIV 618

Query:   438 RVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEM-RSSKALNVYSKKLGVTALHVAAY 496
             ++L+  G S       G+T +H+AA+    +V   + +   + N  S + GVT LH+AA 
Sbjct:   619 KLLLPRGGSPHSPAWNGYTPLHIAAKQNQMEVARSLLQYGGSANAESVQ-GVTPLHLAAQ 677

Query:   497 FGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVRLLLNSA 556
              G A+ V  LLS                 G LG++SG+TPLHL A  G+  V  +L+   
Sbjct:   678 EGHAEMVALLLSKQAN-------------GNLGNKSGLTPLHLVAQEGHVPVADVLIKH- 723

Query:   557 GVQVDAQTQ 565
             GV VDA T+
Sbjct:   724 GVTVDATTR 732

GO:0072661 "protein targeting to plasma membrane" evidence=IEA

GO:0051117 "ATPase binding" evidence=IEA

GO:0048821 "erythrocyte development" evidence=IEA

GO:0030863 "cortical cytoskeleton" evidence=IEA

GO:0030507 "spectrin binding" evidence=IEA

GO:0015672 "monovalent inorganic cation transport" evidence=IEA

GO:0014731 "spectrin-associated cytoskeleton" evidence=IEA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IEA

GO:0006779 "porphyrin-containing compound biosynthetic process" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

MGI|MGI:88024 Ank1 "ankyrin 1, erythroid" [Mus musculus (taxid:10090)]

 Score = 487 (176.5 bits), Expect = 6.6e-45, P = 6.6e-45
 Identities = 171/549 (31%), Positives = 259/549 (47%)

Query:    41 NIAARVKDGDRCALMLLKSGAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKN 100
             +IAAR  D  R A +LL++   P++ +  G TP+H AA Y NL   QLLL  G    +  
Sbjct:   174 HIAAR-NDDTRTAAVLLQNDPNPDVLSKTGFTPLHIAAHYENLNVAQLLLNRGASVNFTP 232

Query:   101 KIGETPLHLASRNCKAEVVDLLIQFVQNISQ--EKVLEYVNSVNEDGASAL------HYA 152
             + G TPLH+ASR     +V LL+     I    +  L  ++    +G   +      H A
Sbjct:   233 QNGITPLHIASRRGNVIMVRLLLDRGAQIETRTKDELTPLHCAARNGHVRISEILLDHGA 292

Query:   153 -CQV-TKAELIPI--TSKEDQ-KTVKLLLEAGADVSLQTKQNHETAFHYCAVAGNNDVLT 207
               Q  TK  L PI   ++ D    V+LLL+  A++   T  +H T  H  A  G++ V  
Sbjct:   293 PIQAKTKNGLSPIHMAAQGDHLDCVRLLLQYNAEIDDITL-DHLTPLHVAAHCGHHRVAK 351

Query:   208 GMLEQMSGTEISKALNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALH 267
              +L++ +    S+ALN     G+TPL IAC + H+ ++  +L   A +D   + G + LH
Sbjct:   352 VLLDKGAKPN-SRALN-----GFTPLHIACKKNHIRVMELLLKTGASIDAVTESGLTPLH 405

Query:   268 LAAEHGYLKV-----SSGKSLKHSVMSFRLPPHNIIPNGFL-----VHDHAAVIDILTLR 317
             +A+  G+L +       G S   S +    P H     G       +  + A  +     
Sbjct:   406 VASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKANAKAKD 465

Query:   318 KQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSL 377
              QTPLH AA  G   + KLLL+ GAS +     G  P+H AA+    + A   L    S 
Sbjct:   466 DQTPLHCAARIGHTGMVKLLLENGASPNLATTAGHTPLHTAAREGHVDTALALLEKEASQ 525

Query:   378 VTATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVV 437
                 TK G T  H+AA  G V + E L++ D     + +N +T   PL +A    + ++V
Sbjct:   526 A-CMTKKGFTPLHVAAKYGKVRLAELLLEHDAHPNAAGKNGLT---PLHVAVHHNNLDIV 581

Query:   438 RVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEM-RSSKALNVYSKKLGVTALHVAAY 496
             ++L+  G S       G+T +H+AA+    +V   + +   + N  S + GVT LH+AA 
Sbjct:   582 KLLLPRGGSPHSPAWNGYTPLHIAAKQNQIEVARSLLQYGGSANAESVQ-GVTPLHLAAQ 640

Query:   497 FGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVRLLLNSA 556
              G  + V  LLS                 G LG++SG+TPLHL +  G+  V  +L+   
Sbjct:   641 EGHTEMVALLLSKQAN-------------GNLGNKSGLTPLHLVSQEGHVPVADVLIKH- 686

Query:   557 GVQVDAQTQ 565
             GV VDA T+
Sbjct:   687 GVTVDATTR 695

GO:0005634 "nucleus" evidence=ISO

GO:0005737 "cytoplasm" evidence=IEA

GO:0005856 "cytoskeleton" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISO

GO:0006779 "porphyrin-containing compound biosynthetic process" evidence=IMP

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=ISO

GO:0007165 "signal transduction" evidence=IEA

GO:0008093 "cytoskeletal adaptor activity" evidence=ISO

GO:0010638 "positive regulation of organelle organization" evidence=ISO

GO:0014731 "spectrin-associated cytoskeleton" evidence=ISO;IMP

GO:0015672 "monovalent inorganic cation transport" evidence=IMP

GO:0016020 "membrane" evidence=IDA

GO:0016529 "sarcoplasmic reticulum" evidence=ISO

GO:0019899 "enzyme binding" evidence=ISO

GO:0030018 "Z disc" evidence=ISO

GO:0030507 "spectrin binding" evidence=ISO

GO:0030673 "axolemma" evidence=ISO

GO:0030863 "cortical cytoskeleton" evidence=IDA

GO:0031430 "M band" evidence=ISO

GO:0031672 "A band" evidence=ISO

GO:0042383 "sarcolemma" evidence=ISO

GO:0043005 "neuron projection" evidence=ISO

GO:0045211 "postsynaptic membrane" evidence=ISO

GO:0048821 "erythrocyte development" evidence=IMP

GO:0051117 "ATPase binding" evidence=ISO

GO:0072661 "protein targeting to plasma membrane" evidence=ISO

RGD|1309620 Ank1 "ankyrin 1, erythrocytic" [Rattus norvegicus (taxid:10116)]

 Score = 484 (175.4 bits), Expect = 1.4e-44, P = 1.4e-44
 Identities = 171/549 (31%), Positives = 258/549 (46%)

Query:    41 NIAARVKDGDRCALMLLKSGAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKN 100
             +IAAR  D  R A +LL++   P++ +  G TP+H AA Y NL   QLLL  G    +  
Sbjct:   174 HIAAR-NDDTRTAAVLLQNDPNPDVLSKTGFTPLHIAAHYENLNVAQLLLNRGASVNFTP 232

Query:   101 KIGETPLHLASRNCKAEVVDLLIQFVQNISQ--EKVLEYVNSVNEDGASAL------HYA 152
             + G TPLH+ASR     +V LL+     I    +  L  ++    +G   +      H A
Sbjct:   233 QNGITPLHIASRRGNVIMVRLLLDRGAQIETRTKDELTPLHCAARNGHVRISEILLDHGA 292

Query:   153 -CQV-TKAELIPI--TSKEDQ-KTVKLLLEAGADVSLQTKQNHETAFHYCAVAGNNDVLT 207
               Q  TK  L PI   ++ D    V+LLL+  A++   T  +H T  H  A  G++ V  
Sbjct:   293 PIQAKTKNGLSPIHMAAQGDHLDCVRLLLQYNAEIDDITL-DHLTPLHVAAHCGHHRVAK 351

Query:   208 GMLEQMSGTEISKALNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALH 267
              +L++ +    S+ALN     G+TPL IAC + H+ ++  +L   A +D   + G + LH
Sbjct:   352 VLLDKGAKPN-SRALN-----GFTPLHIACKKNHIRVMELLLKTGASIDAVTESGLTPLH 405

Query:   268 LAAEHGYLKV-----SSGKSLKHSVMSFRLPPHNIIPNGFL-----VHDHAAVIDILTLR 317
             +A+  G+L +       G S   S +    P H     G       +  + A  +     
Sbjct:   406 VASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKANAKAKD 465

Query:   318 KQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSL 377
              QTPLH AA  G   + KLLL+  AS +     G  P+H AA+    + A   L    S 
Sbjct:   466 DQTPLHCAARIGHTSMVKLLLENDASPNLATTAGHTPLHTAAREGHVDTALALLEKEASQ 525

Query:   378 VTATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVV 437
                 TK G T  H+AA  G V + E L++ D     + +N +T   PL +A    + ++V
Sbjct:   526 A-CMTKKGFTPLHVAAKYGKVRLAELLLEHDAHPNAAGKNGLT---PLHVAVHHNNLDIV 581

Query:   438 RVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEM-RSSKALNVYSKKLGVTALHVAAY 496
             ++L+  G S       G+T +H+AA+    +V   + +   + N  S + GVT LH+AA 
Sbjct:   582 QLLLPRGGSPHSPAWNGYTPLHIAAKQNQIEVARSLLQYGGSANAESVQ-GVTPLHLAAQ 640

Query:   497 FGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVRLLLNSA 556
              G  + V  LLS                 G LG++SG+TPLHL A  G+  V  +L+   
Sbjct:   641 EGHTEMVALLLSKQAN-------------GNLGNKSGLTPLHLVAQEGHVPVADVLIKH- 686

Query:   557 GVQVDAQTQ 565
             GV VDA T+
Sbjct:   687 GVTVDATTR 695

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0005886 "plasma membrane" evidence=ISO;IDA

GO:0006779 "porphyrin-containing compound biosynthetic process" evidence=ISO

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=ISO

GO:0007165 "signal transduction" evidence=IEA

GO:0008093 "cytoskeletal adaptor activity" evidence=ISO

GO:0010638 "positive regulation of organelle organization" evidence=IMP

GO:0014731 "spectrin-associated cytoskeleton" evidence=ISO

GO:0015672 "monovalent inorganic cation transport" evidence=ISO

GO:0016020 "membrane" evidence=ISO

GO:0016529 "sarcoplasmic reticulum" evidence=IDA

GO:0019899 "enzyme binding" evidence=ISO

GO:0030018 "Z disc" evidence=IDA

GO:0030507 "spectrin binding" evidence=ISO

GO:0030673 "axolemma" evidence=IDA

GO:0030863 "cortical cytoskeleton" evidence=ISO

GO:0031430 "M band" evidence=IDA

GO:0031672 "A band" evidence=IDA

GO:0042383 "sarcolemma" evidence=IDA

GO:0043005 "neuron projection" evidence=IDA

GO:0045211 "postsynaptic membrane" evidence=IDA

GO:0048821 "erythrocyte development" evidence=ISO

GO:0051117 "ATPase binding" evidence=ISO

GO:0072661 "protein targeting to plasma membrane" evidence=ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	567
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	5e-28
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	1e-25
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	5e-25
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	9e-25
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	9e-22
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	2e-21
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	3e-21
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	2e-18
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	2e-17
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	3e-16
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	9e-16
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	1e-14
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	1e-13
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	2e-13
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	2e-13
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	4e-13
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	5e-13
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	6e-13
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	2e-12
PHA02875	413	PHA02875, PHA02875, ankyrin repeat protein; Provis	3e-12
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	4e-12
PHA02878	477	PHA02878, PHA02878, ankyrin repeat protein; Provis	7e-12
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	8e-12
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	1e-11
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	2e-11
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	2e-11
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	2e-11
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	3e-11
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	5e-11
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	6e-11
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	1e-10
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	1e-10
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	2e-10
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	3e-10
PTZ00322	664	PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fruct	3e-10
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	5e-10
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	6e-10
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	6e-10
PHA02946	446	PHA02946, PHA02946, ankyin-like protein; Provision	1e-09
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	4e-09
PHA02878	477	PHA02878, PHA02878, ankyrin repeat protein; Provis	4e-09
PTZ00322	664	PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fruct	1e-08
PHA02875	413	PHA02875, PHA02875, ankyrin repeat protein; Provis	2e-08
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	2e-08
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	3e-08
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	4e-08
PHA02736	154	PHA02736, PHA02736, Viral ankyrin protein; Provisi	7e-08
PHA02875	413	PHA02875, PHA02875, ankyrin repeat protein; Provis	1e-07
PHA02878	477	PHA02878, PHA02878, ankyrin repeat protein; Provis	1e-07
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	1e-07
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	2e-07
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	3e-07
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	4e-07
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	6e-07
pfam00023	33	pfam00023, Ank, Ankyrin repeat	6e-07
TIGR00870	743	TIGR00870, trp, transient-receptor-potential calci	7e-07
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	1e-06
PLN03192	823	PLN03192, PLN03192, Voltage-dependent potassium ch	2e-06
PHA02878	477	PHA02878, PHA02878, ankyrin repeat protein; Provis	3e-06
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	3e-06
PHA02875	413	PHA02875, PHA02875, ankyrin repeat protein; Provis	1e-05
PHA02878	477	PHA02878, PHA02878, ankyrin repeat protein; Provis	1e-05
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	1e-05
PHA02875	413	PHA02875, PHA02875, ankyrin repeat protein; Provis	2e-05
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	2e-05
pfam00023	33	pfam00023, Ank, Ankyrin repeat	2e-05
PLN03192	823	PLN03192, PLN03192, Voltage-dependent potassium ch	3e-05
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	5e-05
PLN03192	823	PLN03192, PLN03192, Voltage-dependent potassium ch	5e-05
PHA02875	413	PHA02875, PHA02875, ankyrin repeat protein; Provis	6e-05
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	1e-04
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	1e-04
pfam00023	33	pfam00023, Ank, Ankyrin repeat	1e-04
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	3e-04
PTZ00322	664	PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fruct	4e-04
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	5e-04
smart00248	30	smart00248, ANK, ankyrin repeats	5e-04
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	7e-04
smart00248	30	smart00248, ANK, ankyrin repeats	7e-04
PTZ00322	664	PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fruct	0.001
PTZ00322	664	PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fruct	0.001
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	0.001
pfam00023	33	pfam00023, Ank, Ankyrin repeat	0.001
pfam13606	30	pfam13606, Ank_3, Ankyrin repeat	0.001
PHA02859	209	PHA02859, PHA02859, ankyrin repeat protein; Provis	0.001
PHA02859	209	PHA02859, PHA02859, ankyrin repeat protein; Provis	0.001
PHA02875	413	PHA02875, PHA02875, ankyrin repeat protein; Provis	0.002
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	0.002
TIGR00870	743	TIGR00870, trp, transient-receptor-potential calci	0.002
PTZ00322	664	PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fruct	0.003
TIGR00870	743	TIGR00870, trp, transient-receptor-potential calci	0.003
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	0.004
pfam00023	33	pfam00023, Ank, Ankyrin repeat	0.004
PHA02741	169	PHA02741, PHA02741, hypothetical protein; Provisio	0.004

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score =  108 bits (272), Expect = 5e-28
 Identities = 54/149 (36%), Positives = 81/149 (54%), Gaps = 23/149 (15%)

Query: 223 NKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVSSGKS 282
           N +   G TPL +A + GH+E+V  +L N A V+  D +GR+ LHLAA++G+L++     
Sbjct: 1   NARDEDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEI----- 55

Query: 283 LKHSVMSFRLPPHNIIPNGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGA 342
           +K                  L+ +  A ++       TPLHLAA  G L V KLLL  GA
Sbjct: 56  VK-----------------LLL-EKGADVNARDKDGNTPLHLAARNGNLDVVKLLLKHGA 97

Query: 343 SIDATDDQGQKPIHVAAQNNFPEVAQIFL 371
            ++A D  G+ P+H+AA+N   EV ++ L
Sbjct: 98  DVNARDKDGRTPLHLAAKNGHLEVVKLLL 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score =  101 bits (253), Expect = 1e-25
 Identities = 51/143 (35%), Positives = 76/143 (53%), Gaps = 21/143 (14%)

Query: 64  NLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVVDLLI 123
           N   +DG+TP+H AA  G+L  ++LLLE+G D   K+  G TPLHLA++N   E+V LL+
Sbjct: 1   NARDEDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLL 60

Query: 124 QFVQNISQEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGADVS 183
           +   +         VN+ ++DG + LH A               +   VKLLL+ GADV+
Sbjct: 61  EKGAD---------VNARDKDGNTPLHLAA-----------RNGNLDVVKLLLKHGADVN 100

Query: 184 LQTKQNHETAFHYCAVAGNNDVL 206
            + K    T  H  A  G+ +V+
Sbjct: 101 ARDKDGR-TPLHLAAKNGHLEVV 122

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score =  100 bits (250), Expect = 5e-25
 Identities = 52/131 (39%), Positives = 71/131 (54%), Gaps = 13/131 (9%)

Query: 423 TPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVY 482
           TPL LAA  GH  VV++L++ GA    ++  G T +HLAA+NGH ++++ +    A    
Sbjct: 9   TPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADVNA 68

Query: 483 SKKLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAY 542
             K G T LH+AA  G  D V+ LL H           GA        + G TPLHLAA 
Sbjct: 69  RDKDGNTPLHLAARNGNLDVVKLLLKH-----------GADV--NARDKDGRTPLHLAAK 115

Query: 543 SGNENVVRLLL 553
           +G+  VV+LLL
Sbjct: 116 NGHLEVVKLLL 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 99.4 bits (248), Expect = 9e-25
 Identities = 51/150 (34%), Positives = 83/150 (55%), Gaps = 24/150 (16%)

Query: 256 DVFDQEGRSALHLAAEHGYLKVSSGKSLKHSVMSFRLPPHNIIPNGFLVHDHAAVIDILT 315
           +  D++GR+ LHLAA +G+L+V                         L+ ++ A ++   
Sbjct: 1   NARDEDGRTPLHLAASNGHLEVVK----------------------LLL-ENGADVNAKD 37

Query: 316 LRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHP 375
              +TPLHLAA+ G L++ KLLL+ GA ++A D  G  P+H+AA+N   +V ++ L+ H 
Sbjct: 38  NDGRTPLHLAAKNGHLEIVKLLLEKGADVNARDKDGNTPLHLAARNGNLDVVKLLLK-HG 96

Query: 376 SLVTATTKDGNTCAHIAAMQGSVGVIEELM 405
           + V A  KDG T  H+AA  G + V++ L+
Sbjct: 97  ADVNARDKDGRTPLHLAAKNGHLEVVKLLL 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 90.9 bits (226), Expect = 9e-22
 Identities = 47/127 (37%), Positives = 76/127 (59%), Gaps = 4/127 (3%)

Query: 345 DATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIEEL 404
           +A D+ G+ P+H+AA N   EV ++ L      V A   DG T  H+AA  G + +++ L
Sbjct: 1   NARDEDGRTPLHLAASNGHLEVVKLLLENGAD-VNAKDNDGRTPLHLAAKNGHLEIVKLL 59

Query: 405 MKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQN 464
           ++      ++AR++    TPL LAA  G+ +VV++L+K GA     +K G T +HLAA+N
Sbjct: 60  LEKGAD--VNARDK-DGNTPLHLAARNGNLDVVKLLLKHGADVNARDKDGRTPLHLAAKN 116

Query: 465 GHNQVLE 471
           GH +V++
Sbjct: 117 GHLEVVK 123

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 89.8 bits (223), Expect = 2e-21
 Identities = 45/139 (32%), Positives = 74/139 (53%), Gaps = 18/139 (12%)

Query: 139 NSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGADVSLQTKQNHETAFHYCA 198
           N+ +EDG + LH A                 + VKLLLE GADV+ +      T  H  A
Sbjct: 1   NARDEDGRTPLHLAAS-----------NGHLEVVKLLLENGADVNAKDNDGR-TPLHLAA 48

Query: 199 VAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVF 258
             G+ +++  +LE+         +N +   G TPL +A   G++++V  +L + A V+  
Sbjct: 49  KNGHLEIVKLLLEKG------ADVNARDKDGNTPLHLAARNGNLDVVKLLLKHGADVNAR 102

Query: 259 DQEGRSALHLAAEHGYLKV 277
           D++GR+ LHLAA++G+L+V
Sbjct: 103 DKDGRTPLHLAAKNGHLEV 121

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 89.4 bits (222), Expect = 3e-21
 Identities = 52/166 (31%), Positives = 76/166 (45%), Gaps = 47/166 (28%)

Query: 11  ETPLHIAARVKDGDRCALMLLKSGAGPNLTNIAARVKDGDRCALMLLKSGAGPNLTTDDG 70
            TPLH+AA                                    +LL++GA  N   +DG
Sbjct: 8   RTPLHLAASNGH---------------------------LEVVKLLLENGADVNAKDNDG 40

Query: 71  QTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVVDLLIQFVQNIS 130
           +TP+H AAK G+L  ++LLLE G D   ++K G TPLHLA+RN   +VV LL++   ++ 
Sbjct: 41  RTPLHLAAKNGHLEIVKLLLEKGADVNARDKDGNTPLHLAARNGNLDVVKLLLKHGADV- 99

Query: 131 QEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLL 176
                   N+ ++DG + LH A +               + VKLLL
Sbjct: 100 --------NARDKDGRTPLHLAAK-----------NGHLEVVKLLL 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 87.8 bits (218), Expect = 2e-18
 Identities = 71/290 (24%), Positives = 112/290 (38%), Gaps = 66/290 (22%)

Query: 90  LEDGGDPMYKNKIGETPLHLASRNCKAEVVDLLIQFVQNISQEKVLEYVNSVNEDGASAL 149
            +D  D  YK  +   PL+LA      +VV +L+              +NS  ++ ++ L
Sbjct: 24  EDDLNDYSYKKPV--LPLYLAKEARNIDVVKILLD--NGA-------DINSSTKNNSTPL 72

Query: 150 HYACQVTKAELIPITSKEDQKTVKLLLEAGADVSLQTKQNHETAFHYCAVAGNNDVLTGM 209
           HY         I     + ++ VKLLLE GA+V                           
Sbjct: 73  HYLSN------IKYNLTDVKEIVKLLLEYGANV--------------------------- 99

Query: 210 LEQMSGTEISKALNKQTSIGWTPLLIACNR--GHMELVNTMLNNHARVDVFDQEGRSALH 267
                        N   + G TPLL A ++      +V  +L+N A V++ + +G + LH
Sbjct: 100 -------------NAPDNNGITPLLYAISKKSNSYSIVEYLLDNGANVNIKNSDGENLLH 146

Query: 268 LAAEHGYLKVSSGKSL-KHSVMSFRLPPHNIIPNGFLVHDHAAVIDILTLRKQTPLHLAA 326
           L  E   + +   K L    V        N       +  +   I+I  +   TPLH A 
Sbjct: 147 LYLESNKIDLKILKLLIDKGVDI------NAKNRVNYLLSYGVPINIKDVYGFTPLHYAV 200

Query: 327 EAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPS 376
                +  K LLDLGA+ +  +  G  P+H+A  NN  E+ ++ L   PS
Sbjct: 201 YNNNPEFVKYLLDLGANPNLVNKYGDTPLHIAILNNNKEIFKLLLNNGPS 250

Length = 422

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 78.6 bits (194), Expect = 2e-17
 Identities = 40/117 (34%), Positives = 59/117 (50%), Gaps = 14/117 (11%)

Query: 451 NKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLGVTALHVAAYFGQADTVRELLSHV 510
           ++ G T +HLAA NGH +V++ +  + A        G T LH+AA  G  + V+ LL   
Sbjct: 4   DEDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKG 63

Query: 511 PGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVRLLLNSAGVQVDAQTQEN 567
                 D             + G TPLHLAA +GN +VV+LLL   G  V+A+ ++ 
Sbjct: 64  ADVNARD-------------KDGNTPLHLAARNGNLDVVKLLLKH-GADVNARDKDG 106

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 81.2 bits (201), Expect = 3e-16
 Identities = 73/328 (22%), Positives = 124/328 (37%), Gaps = 82/328 (25%)

Query: 56  LLKSGAGPNLTTDDGQTPVHAAAKYGNLV-TLQLLLEDGGDPMYKNKIGETPLH--LASR 112
           LL++GA  N     G TP+H        +  ++LL++ G D   K+K+G TPLH  L+  
Sbjct: 69  LLEAGADVNAPERCGFTPLHLYLYNATTLDVIKLLIKAGADVNAKDKVGRTPLHVYLSGF 128

Query: 113 NCKAEVVDLLIQFVQNISQEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKE-DQKT 171
           N   +V+ LL++             VN+++  G + L           + + S+  + + 
Sbjct: 129 NINPKVIRLLLRK--GAD-------VNALDLYGMTPLA----------VLLKSRNANVEL 169

Query: 172 VKLLLEAGADVSLQTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWT 231
           ++LL++AGADV         +  H+   +                +    + +       
Sbjct: 170 LRLLIDAGADVY-AVDDRFRSLLHHHLQS---------------FKPRARIVR------- 206

Query: 232 PLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVSSGKSLKHSVMSFR 291
                      EL+    +  A     D  G + LH  A           S K S++   
Sbjct: 207 -----------ELIRAGCDPAAT----DMLGNTPLHSMATGS--------SCKRSLVL-- 241

Query: 292 LPPHNIIPNGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQG 351
                ++  G         I+      QTPLH AA     + C+ L+ LGA I+A    G
Sbjct: 242 ----PLLIAG-------ISINARNRYGQTPLHYAAVFNNPRACRRLIALGADINAVSSDG 290

Query: 352 QKPIHVAAQNNFPEVAQIFLRAHPSLVT 379
             P+ +  +NN     +  L  +PS  T
Sbjct: 291 NTPLSLMVRNNNGRAVRAALAKNPSAET 318

Length = 471

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 79.3 bits (196), Expect = 9e-16
 Identities = 60/255 (23%), Positives = 93/255 (36%), Gaps = 74/255 (29%)

Query: 29  MLLKSGAGPN------------LTNIAARVKDGDRCALMLLKSGAGPNLTTDDGQTPVHA 76
           +LL +GA  N            L+NI   + D      +LL+ GA  N   ++G TP+  
Sbjct: 53  ILLDNGADINSSTKNNSTPLHYLSNIKYNLTDVKEIVKLLLEYGANVNAPDNNGITPLLY 112

Query: 77  AA--KYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKA--EVVDLLIQFVQNISQE 132
           A   K  +   ++ LL++G +   KN  GE  LHL   + K   +++ LLI    +I+ +
Sbjct: 113 AISKKSNSYSIVEYLLDNGANVNIKNSDGENLLHLYLESNKIDLKILKLLIDKGVDINAK 172

Query: 133 KVLEY-------VNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGADVSLQ 185
             + Y       +N  +  G + LHYA      E            VK LL+ GA+    
Sbjct: 173 NRVNYLLSYGVPINIKDVYGFTPLHYAVYNNNPE-----------FVKYLLDLGANP--- 218

Query: 186 TKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIACNRGHMELV 245
                            N V                       G TPL IA    + E+ 
Sbjct: 219 -----------------NLV--------------------NKYGDTPLHIAILNNNKEIF 241

Query: 246 NTMLNNHARVDVFDQ 260
             +LNN   +    +
Sbjct: 242 KLLLNNGPSIKTIIE 256

Length = 422

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 69.6 bits (171), Expect = 1e-14
 Identities = 41/111 (36%), Positives = 61/111 (54%), Gaps = 22/111 (19%)

Query: 75  HAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVVDLLIQFVQNISQEKV 134
           H AAK GNL  ++LLLE G D    +   +T LHLA+RN   E+V LL++   ++     
Sbjct: 2   HLAAKNGNLELVKLLLEKGADVNLGDT--DTALHLAARNGNLEIVKLLLEHGADV----- 54

Query: 135 LEYVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGADVSLQ 185
               N+ ++DG +ALH A +             + + VKLLLE GAD++L+
Sbjct: 55  ----NAKDKDGNTALHLAAR-----------NGNLEIVKLLLEHGADINLK 90

Length = 91

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 73.6 bits (180), Expect = 1e-13
 Identities = 86/358 (24%), Positives = 146/358 (40%), Gaps = 75/358 (20%)

Query: 47  KDGDRCALMLLKSGAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETP 106
           +D    A MLL+ GA  N       TP+H AA+ GN   + LLL  G D         + 
Sbjct: 155 QDELLIAEMLLEGGADVNAKDIYCITPIHYAAERGNAKMVNLLLSYGADVNIIALDDLSV 214

Query: 107 LHLASRNCKAEVVDLLIQFVQNISQE---------------KVLEY-----VNSVNEDGA 146
           L  A  +   + +  +I    NI++                 +L Y     VNS+++   
Sbjct: 215 LECAVDSKNIDTIKAIIDNRSNINKNDLSLLKAIRNEDLETSLLLYDAGFSVNSIDDCKN 274

Query: 147 SALHYACQV-TKAELIP--------ITSKE---------------DQKTVKLLLEAGADV 182
           + LH+A Q  + + L+P        + +K                D + ++ L+  GADV
Sbjct: 275 TPLHHASQAPSLSRLVPKLLERGADVNAKNIKGETPLYLMAKNGYDTENIRTLIMLGADV 334

Query: 183 SLQTKQNHETAFHYCAVAG-NNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIACNRGH 241
           +    + + T  H  +    N D++  +L      E+   +N +     TP+  A  R +
Sbjct: 335 N-AADRLYITPLHQASTLDRNKDIVITLL------ELGANVNARDYCDKTPIHYAAVRNN 387

Query: 242 MELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVSSGKSLKHSVMSFRLPPHNIIPNG 301
           + ++NT+L+  A ++   Q+  +ALH A   G     S K+L                  
Sbjct: 388 VVIINTLLDYGADIEALSQKIGTALHFAL-CGTNPYMSVKTLI----------------- 429

Query: 302 FLVHDHAAVIDILTLRKQTPLHLAAEAG-QLQVCKLLLDLGASIDATDDQGQKPIHVA 358
               D  A ++       TPLH A +   +L V ++LLD GA ++A + Q Q P+ +A
Sbjct: 430 ----DRGANVNSKNKDLSTPLHYACKKNCKLDVIEMLLDNGADVNAINIQNQYPLLIA 483

Length = 682

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 66.1 bits (162), Expect = 2e-13
 Identities = 31/85 (36%), Positives = 50/85 (58%), Gaps = 2/85 (2%)

Query: 425 LQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSK 484
           L LAA+ G+  +V++L++ GA     +    TA+HLAA+NG+ ++++ +    A      
Sbjct: 1   LHLAAKNGNLELVKLLLEKGADVNLGDTD--TALHLAARNGNLEIVKLLLEHGADVNAKD 58

Query: 485 KLGVTALHVAAYFGQADTVRELLSH 509
           K G TALH+AA  G  + V+ LL H
Sbjct: 59  KDGNTALHLAARNGNLEIVKLLLEH 83

Length = 91

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 65.7 bits (161), Expect = 2e-13
 Identities = 33/112 (29%), Positives = 53/112 (47%), Gaps = 25/112 (22%)

Query: 266 LHLAAEHGYLKVSSGKSLKHSVMSFRLPPHNIIPNGFLVHDHAAVIDILTLRKQTPLHLA 325
           LHLAA++G L++             +L    ++  G          D+      T LHLA
Sbjct: 1   LHLAAKNGNLEL------------VKL----LLEKG---------ADVNLGDTDTALHLA 35

Query: 326 AEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSL 377
           A  G L++ KLLL+ GA ++A D  G   +H+AA+N   E+ ++ L     +
Sbjct: 36  ARNGNLEIVKLLLEHGADVNAKDKDGNTALHLAARNGNLEIVKLLLEHGADI 87

Length = 91

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 65.0 bits (159), Expect = 4e-13
 Identities = 37/91 (40%), Positives = 55/91 (60%), Gaps = 3/91 (3%)

Query: 42  IAARVKDGDRCALMLLKSGAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNK 101
           +AA+  + +    +LL+ GA  NL   D  T +H AA+ GNL  ++LLLE G D   K+K
Sbjct: 3   LAAKNGNLE-LVKLLLEKGADVNLGDTD--TALHLAARNGNLEIVKLLLEHGADVNAKDK 59

Query: 102 IGETPLHLASRNCKAEVVDLLIQFVQNISQE 132
            G T LHLA+RN   E+V LL++   +I+ +
Sbjct: 60  DGNTALHLAARNGNLEIVKLLLEHGADINLK 90

Length = 91

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 68.7 bits (167), Expect = 5e-13
 Identities = 43/162 (26%), Positives = 69/162 (42%), Gaps = 21/162 (12%)

Query: 222 LNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVSSGK 281
           L  +   G  PL  A ++G  ++V  +L + A V+  D +G + LHLAA +G     +  
Sbjct: 66  LAARDLDGRLPLHSAASKGDDKIVKLLLASGADVNAKDADGDTPLHLAALNGNPPEGN-- 123

Query: 282 SLKHSVMSFRLPPHNIIPNGFLVHDHAAVIDILTLRK---QTPLHLAAEAGQLQVCKLLL 338
                V    L             +  A +D+  LR     TPLH AA  G   + +LLL
Sbjct: 124 ---IEVAKLLL-------------EAGADLDVNNLRDEDGNTPLHWAALNGDADIVELLL 167

Query: 339 DLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTA 380
           + GA  ++ +  G   +  AA+N   E+ ++ L     L   
Sbjct: 168 EAGADPNSRNSYGVTALDPAAKNGRIELVKLLLDKGLHLSLL 209

Length = 235

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 64.2 bits (157), Expect = 6e-13
 Identities = 38/116 (32%), Positives = 58/116 (50%), Gaps = 25/116 (21%)

Query: 233 LLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVSSGKSLKHSVMSFRL 292
           L +A   G++ELV  +L   A V++ D +  +ALHLAA +G L++     +K        
Sbjct: 1   LHLAAKNGNLELVKLLLEKGADVNLGDTD--TALHLAARNGNLEI-----VK-------- 45

Query: 293 PPHNIIPNGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATD 348
                     L+ +H A ++       T LHLAA  G L++ KLLL+ GA I+  D
Sbjct: 46  ---------LLL-EHGADVNAKDKDGNTALHLAARNGNLEIVKLLLEHGADINLKD 91

Length = 91

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 63.0 bits (154), Expect = 2e-12
 Identities = 27/89 (30%), Positives = 51/89 (57%), Gaps = 5/89 (5%)

Query: 390 HIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTD 449
           H+AA  G++ +++ L++          N     T L LAA  G+  +V++L++ GA    
Sbjct: 2   HLAAKNGNLELVKLLLEKGAD-----VNLGDTDTALHLAARNGNLEIVKLLLEHGADVNA 56

Query: 450 ENKTGFTAVHLAAQNGHNQVLEEMRSSKA 478
           ++K G TA+HLAA+NG+ ++++ +    A
Sbjct: 57  KDKDGNTALHLAARNGNLEIVKLLLEHGA 85

Length = 91

>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional

 Score = 68.5 bits (167), Expect = 3e-12
 Identities = 50/212 (23%), Positives = 93/212 (43%), Gaps = 28/212 (13%)

Query: 56  LLKSGAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCK 115
           LL  G  PN    DG +P+  A K+ +   ++LL++ G  P  K    E+ LH A     
Sbjct: 21  LLDIGINPNFEIYDGISPIKLAMKFRDSEAIKLLMKHGAIPDVKYPDIESELHDAVEEGD 80

Query: 116 AEVVDLLIQFVQNISQEKVLEYVNSV-NEDGASALHYACQVTKAELIPITSKEDQKTVKL 174
            + V+ L+   +         + + V  +DG + LH A  + K +++           KL
Sbjct: 81  VKAVEELLDLGK---------FADDVFYKDGMTPLHLATILKKLDIM-----------KL 120

Query: 175 LLEAGADVSLQTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLL 234
           L+  GAD  +    +  +  H   + G+   +  +++  +  +I      +   G TPL+
Sbjct: 121 LIARGADPDI-PNTDKFSPLHLAVMMGDIKGIELLIDHKACLDI------EDCCGCTPLI 173

Query: 235 IACNRGHMELVNTMLNNHARVDVFDQEGRSAL 266
           IA  +G + +   +L++ A +D F + G  A 
Sbjct: 174 IAMAKGDIAICKMLLDSGANIDYFGKNGCVAA 205

Length = 413

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 66.0 bits (160), Expect = 4e-12
 Identities = 41/178 (23%), Positives = 67/178 (37%), Gaps = 14/178 (7%)

Query: 98  YKNKIGETPLHLASRNCKAEVVDLLIQFVQNISQEKVLEYVNSVNEDGASALHYACQVTK 157
             +     P            +       + + +  V  ++ + + DG   LH A     
Sbjct: 26  LLSLDLSNPSDKKLNLYLELALLPAASLSELLLKLIVDRHLAARDLDGRLPLHSAA---- 81

Query: 158 AELIPITSKEDQKTVKLLLEAGADVSLQTKQNHETAFHYCAVAGNNDVLTGML--EQMSG 215
                  SK D K VKLLL +GADV+ +   + +T  H  A+ GN       +    +  
Sbjct: 82  -------SKGDDKIVKLLLASGADVNAKDA-DGDTPLHLAALNGNPPEGNIEVAKLLLEA 133

Query: 216 TEISKALNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHG 273
                  N +   G TPL  A   G  ++V  +L   A  +  +  G +AL  AA++G
Sbjct: 134 GADLDVNNLRDEDGNTPLHWAALNGDADIVELLLEAGADPNSRNSYGVTALDPAAKNG 191

Length = 235

>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional

 Score = 67.2 bits (164), Expect = 7e-12
 Identities = 64/308 (20%), Positives = 118/308 (38%), Gaps = 62/308 (20%)

Query: 73  PVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKA-------EVVDLLIQ- 124
           P+H A +  NL  ++ LL  G +    +    TPLH+    CK        E++  + + 
Sbjct: 40  PLHQAVEARNLDVVKSLLTRGHNVNQPDHRDLTPLHII---CKEPNKLGMKEMIRSINKC 96

Query: 125 -------------FVQNISQEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQKT 171
                          +N+   K++   N         L Y  + +K ++I      + + 
Sbjct: 97  SVFYTLVAIKDAFNNRNVEIFKII-LTNRYKNIQTIDLVYIDKKSKDDII------EAEI 149

Query: 172 VKLLLEAGADVSLQTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWT 231
            KLLL  GAD++++ +    TA HY     +  +   +L   +   I    N       +
Sbjct: 150 TKLLLSYGADINMKDRHKGNTALHYATENKDQRLTELLLSYGANVNIPDKTNN------S 203

Query: 232 PLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVSSGKSLKHSVMSFR 291
           PL  A    +  +V+ +L N A  D  D+ G + LH         +S G    + ++   
Sbjct: 204 PLHHAVKHYNKPIVHILLENGASTDARDKCGNTPLH---------ISVGYCKDYDILKLL 254

Query: 292 LPPHNIIPNGFLVHDHAAVIDIL-TLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQ 350
           L             +H   ++    +   T LH + ++   +  KLLL+ GA I++ +  
Sbjct: 255 L-------------EHGVDVNAKSYILGLTALHSSIKSE--RKLKLLLEYGADINSLNSY 299

Query: 351 GQKPIHVA 358
              P+  A
Sbjct: 300 KLTPLSSA 307

Length = 477

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 67.4 bits (165), Expect = 8e-12
 Identities = 80/306 (26%), Positives = 131/306 (42%), Gaps = 40/306 (13%)

Query: 170 KTVKLLLEAGADVSLQTKQNHETAFHYC---AVAGNNDVLTGMLEQMSGTEISKALNKQT 226
           + V+ LL AGADV+    +  +T  H     +     D++  +LE  +G ++    N   
Sbjct: 28  EEVRRLLAAGADVN-FRGEYGKTPLHLYLHYSSEKVKDIVRLLLE--AGADV----NAPE 80

Query: 227 SIGWTPL-LIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVSSGKSLKH 285
             G+TPL L   N   ++++  ++   A V+  D+ GR+ LH+     YL   SG ++  
Sbjct: 81  RCGFTPLHLYLYNATTLDVIKLLIKAGADVNAKDKVGRTPLHV-----YL---SGFNINP 132

Query: 286 SVMSFRLPPHNIIPNGFLVHDHAAVIDILTLRKQTPLH--LAAEAGQLQVCKLLLDLGAS 343
            V+   L       N   ++              TPL   L +    +++ +LL+D GA 
Sbjct: 133 KVIRL-LLRKGADVNALDLYGM------------TPLAVLLKSRNANVELLRLLIDAGAD 179

Query: 344 IDATDDQGQKPIHVAAQNNFPEVAQIF--LRAHPSLVTATTKDGNTCAHIAAMQGSVGVI 401
           + A DD+ +  +H   Q+ F   A+I   L        AT   GNT  H  A   S    
Sbjct: 180 VYAVDDRFRSLLHHHLQS-FKPRARIVRELIRAGCDPAATDMLGNTPLHSMATGSSCKRS 238

Query: 402 EELMKFDRSGV-ISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHL 460
             ++    +G+ I+ARNR    TPL  AA   +    R L+  GA     +  G T + L
Sbjct: 239 L-VLPLLIAGISINARNRYG-QTPLHYAAVFNNPRACRRLIALGADINAVSSDGNTPLSL 296

Query: 461 AAQNGH 466
             +N +
Sbjct: 297 MVRNNN 302

Length = 471

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 66.6 bits (163), Expect = 1e-11
 Identities = 64/268 (23%), Positives = 107/268 (39%), Gaps = 55/268 (20%)

Query: 305 HDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNF- 363
                + D    +   PL+LA EA  + V K+LLD GA I+++      P+H  +   + 
Sbjct: 22  IMEDDLNDYSYKKPVLPLYLAKEARNIDVVKILLDNGADINSSTKNNSTPLHYLSNIKYN 81

Query: 364 ----PEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQ--GSVGVIEELMKFDRSGVISARN 417
                E+ ++ L  + + V A   +G T    A  +   S  ++E L   D    ++ +N
Sbjct: 82  LTDVKEIVKLLL-EYGANVNAPDNNGITPLLYAISKKSNSYSIVEYL--LDNGANVNIKN 138

Query: 418 RVTEATPLQLAAEGGHA--NVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRS 475
              E   L L  E       ++++L+  G             V + A+N  N +L     
Sbjct: 139 SDGE-NLLHLYLESNKIDLKILKLLIDKG-------------VDINAKNRVNYLLSYGVP 184

Query: 476 SKALNVYSKKLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELG------ 529
               +VY    G T LH A Y    + V+ LL                   +LG      
Sbjct: 185 INIKDVY----GFTPLHYAVYNNNPEFVKYLL-------------------DLGANPNLV 221

Query: 530 SESGMTPLHLAAYSGNENVVRLLLNSAG 557
           ++ G TPLH+A  + N+ + +LLLN+  
Sbjct: 222 NKYGDTPLHIAILNNNKEIFKLLLNNGP 249

Length = 422

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 65.5 bits (160), Expect = 2e-11
 Identities = 38/121 (31%), Positives = 52/121 (42%), Gaps = 11/121 (9%)

Query: 11  ETPLHIAARVKDGDRCAL-MLLKSGAGPNLTNIAARVKDGDRCALMLLKSGAGPNLTTDD 69
           E  LH+       D   L +L+  G   N  N   RV         LL  G   N+    
Sbjct: 142 ENLLHLYLESNKIDLKILKLLIDKGVDINAKN---RVN-------YLLSYGVPINIKDVY 191

Query: 70  GQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVVDLLIQFVQNI 129
           G TP+H A    N   ++ LL+ G +P   NK G+TPLH+A  N   E+  LL+    +I
Sbjct: 192 GFTPLHYAVYNNNPEFVKYLLDLGANPNLVNKYGDTPLHIAILNNNKEIFKLLLNNGPSI 251

Query: 130 S 130
            
Sbjct: 252 K 252

Length = 422

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 60.0 bits (146), Expect = 2e-11
 Identities = 35/106 (33%), Positives = 54/106 (50%), Gaps = 18/106 (16%)

Query: 459 HLAAQNGHNQVLEEMRSSKA-LNVYSKKLGVTALHVAAYFGQADTVRELLSHVPGTVKSD 517
           HLAA+NG+ ++++ +    A +N+       TALH+AA  G  + V+ LL H        
Sbjct: 2   HLAAKNGNLELVKLLLEKGADVNLGDTD---TALHLAARNGNLEIVKLLLEH-------- 50

Query: 518 PPTGASFLGELGSESGMTPLHLAAYSGNENVVRLLLNSAGVQVDAQ 563
              GA        + G T LHLAA +GN  +V+LLL   G  ++ +
Sbjct: 51  ---GADV--NAKDKDGNTALHLAARNGNLEIVKLLL-EHGADINLK 90

Length = 91

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 66.1 bits (161), Expect = 2e-11
 Identities = 61/198 (30%), Positives = 100/198 (50%), Gaps = 36/198 (18%)

Query: 11  ETPLHIAARVKDGDRCAL-MLLKSGAGPNLTN--------IAARVKDGDRCALMLLKSGA 61
           +T LH A  +K GD  ++ ML + GA  N+ +        IA +    D   L LL+ GA
Sbjct: 125 KTFLHYA--IKKGDLESIKMLFEYGADVNIEDDNGCYPIHIAIKHNFFDIIKL-LLEKGA 181

Query: 62  GPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVVDL 121
             N+  ++G++P+H AA+YG+   ++LL++ G   M K K G TPLH A  + ++  ++L
Sbjct: 182 YANVKDNNGESPLHNAAEYGDYACIKLLIDHGNHIMNKCKNGFTPLHNAIIHNRS-AIEL 240

Query: 122 LIQFVQNISQEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGAD 181
           LI    N S       +N  + DG++ LH+A         P    +    + +LL   AD
Sbjct: 241 LI---NNAS-------INDQDIDGSTPLHHAIN-------PPCDID---IIDILLYHKAD 280

Query: 182 VSLQTKQNH---ETAFHY 196
           +S++  +     +TAF Y
Sbjct: 281 ISIKDNKGENPIDTAFKY 298

Length = 434

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 63.7 bits (154), Expect = 3e-11
 Identities = 48/192 (25%), Positives = 73/192 (38%), Gaps = 34/192 (17%)

Query: 275 LKVSSGKSLKHSVMSFRLPPHNIIPNGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVC 334
                   L+ +++        ++      H  A  +D        PLH AA  G  ++ 
Sbjct: 35  SDKKLNLYLELALLPAASLSELLLKLIVDRHLAARDLDGRL-----PLHSAASKGDDKIV 89

Query: 335 KLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAM 394
           KLLL  GA ++A D  G  P+H+AA N  P    I                         
Sbjct: 90  KLLLASGADVNAKDADGDTPLHLAALNGNPPEGNIE------------------------ 125

Query: 395 QGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTG 454
                V + L++      ++        TPL  AA  G A++V +L++AGA     N  G
Sbjct: 126 -----VAKLLLEAGADLDVNNLRDEDGNTPLHWAALNGDADIVELLLEAGADPNSRNSYG 180

Query: 455 FTAVHLAAQNGH 466
            TA+  AA+NG 
Sbjct: 181 VTALDPAAKNGR 192

Length = 235

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 64.6 bits (157), Expect = 5e-11
 Identities = 72/309 (23%), Positives = 126/309 (40%), Gaps = 56/309 (18%)

Query: 64  NLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVVDLLI 123
           N++ D+  TP+  A + G+   ++L ++ G D  + N     PL  A +    +++ LLI
Sbjct: 29  NISVDETTTPLIDAIRSGDAKIVELFIKHGADINHINTKIPHPLLTAIKIGAHDIIKLLI 88

Query: 124 QFVQNISQEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGADVS 183
                          N V+             T    IP   K+    +K +L+ G DV+
Sbjct: 89  --------------DNGVD-------------TSILPIPCIEKD---MIKTILDCGIDVN 118

Query: 184 LQTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIACNRGHME 243
           ++  +  +T  HY    G+ + +  + E  +   I +  N     G  P+ IA      +
Sbjct: 119 IKDAEL-KTFLHYAIKKGDLESIKMLFEYGADVNI-EDDN-----GCYPIHIAIKHNFFD 171

Query: 244 LVNTMLNNHARVDVFDQEGRSALHLAAEHGYLK-----VSSGKSLKHSVMSFRLPPHNII 298
           ++  +L   A  +V D  G S LH AAE+G        +  G  + +   +   P HN I
Sbjct: 172 IIKLLLEKGAYANVKDNNGESPLHNAAEYGDYACIKLLIDHGNHIMNKCKNGFTPLHNAI 231

Query: 299 PNGFLVHDHAAV--------IDILTLRKQTPLHLAAE-AGQLQVCKLLLDLGASIDATDD 349
                +H+ +A+        I+   +   TPLH A      + +  +LL   A I   D+
Sbjct: 232 -----IHNRSAIELLINNASINDQDIDGSTPLHHAINPPCDIDIIDILLYHKADISIKDN 286

Query: 350 QGQKPIHVA 358
           +G+ PI  A
Sbjct: 287 KGENPIDTA 295

Length = 434

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 64.6 bits (157), Expect = 6e-11
 Identities = 53/218 (24%), Positives = 100/218 (45%), Gaps = 30/218 (13%)

Query: 56  LLKSGAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCK 115
           +L  G   N+   + +T +H A K G+L ++++L E G D   ++  G  P+H+A ++  
Sbjct: 110 ILDCGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGADVNIEDDNGCYPIHIAIKHNF 169

Query: 116 AEVVDLLIQFVQNISQEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLL 175
            +++ LL+        EK   Y N  + +G S LH A +             D   +KLL
Sbjct: 170 FDIIKLLL--------EKG-AYANVKDNNGESPLHNAAEYG-----------DYACIKLL 209

Query: 176 LEAGADVSLQTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLI 235
           ++ G  +  + K N  T  H  A+  N   +  ++   S       +N Q   G TPL  
Sbjct: 210 IDHGNHIMNKCK-NGFTPLH-NAIIHNRSAIELLINNAS-------INDQDIDGSTPLHH 260

Query: 236 ACNRG-HMELVNTMLNNHARVDVFDQEGRSALHLAAEH 272
           A N    +++++ +L + A + + D +G + +  A ++
Sbjct: 261 AINPPCDIDIIDILLYHKADISIKDNKGENPIDTAFKY 298

Length = 434

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 63.1 bits (154), Expect = 1e-10
 Identities = 63/285 (22%), Positives = 106/285 (37%), Gaps = 70/285 (24%)

Query: 72  TPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASR-----NCKAEVVDLLIQFV 126
            P++ A +  N+  +++LL++G D     K   TPLH  S          E+V LL+++ 
Sbjct: 37  LPLYLAKEARNIDVVKILLDNGADINSSTKNNSTPLHYLSNIKYNLTDVKEIVKLLLEYG 96

Query: 127 QNISQEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGADVSLQT 186
            N+         N+ + +G + L YA                   V+ LL+ GA+V+++ 
Sbjct: 97  ANV---------NAPDNNGITPLLYAI---------SKKSNSYSIVEYLLDNGANVNIKN 138

Query: 187 KQNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKAL-NKQTSIGWTPLLIACNRGHMELV 245
               E   H    +   D            +I K L +K   I       A NR     V
Sbjct: 139 SDG-ENLLHLYLESNKID-----------LKILKLLIDKGVDIN------AKNR-----V 175

Query: 246 NTMLNNHARVDVFDQEGRSALHLAAEHGYLKVSSGKSLKHSVMSFRLPPHNIIPNGFLVH 305
           N +L+    +++ D  G + LH A  +                         +    L  
Sbjct: 176 NYLLSYGVPINIKDVYGFTPLHYAVYNNNP--------------------EFV-KYLL-- 212

Query: 306 DHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQ 350
           D  A  +++     TPLH+A      ++ KLLL+ G SI    + 
Sbjct: 213 DLGANPNLVNKYGDTPLHIAILNNNKEIFKLLLNNGPSIKTIIET 257

Length = 422

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 57.7 bits (140), Expect = 1e-10
 Identities = 36/130 (27%), Positives = 56/130 (43%), Gaps = 39/130 (30%)

Query: 322 LHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTAT 381
           LHLAA+ G L++ KLLL+ GA ++  D      +H+AA+N   E+ ++ L      V A 
Sbjct: 1   LHLAAKNGNLELVKLLLEKGADVNLGDTDT--ALHLAARNGNLEIVKLLLEHGAD-VNAK 57

Query: 382 TKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLV 441
            KDGNT                                     L LAA  G+  +V++L+
Sbjct: 58  DKDGNT------------------------------------ALHLAARNGNLEIVKLLL 81

Query: 442 KAGASCTDEN 451
           + GA    ++
Sbjct: 82  EHGADINLKD 91

Length = 91

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 56.1 bits (136), Expect = 2e-10
 Identities = 22/52 (42%), Positives = 34/52 (65%)

Query: 320 TPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFL 371
           T LH AA +G+L++ K LL+ G  I+ TD+ G   +H+AA+N   EV ++ L
Sbjct: 3   TALHKAAISGRLELVKYLLEKGVDINRTDEDGNTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 62.3 bits (152), Expect = 3e-10
 Identities = 76/338 (22%), Positives = 119/338 (35%), Gaps = 76/338 (22%)

Query: 234 LIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVSSGKSLKHSVMSFRLP 293
           L+  +   +E V  +L   A V+   + G++ LHL     YL  SS K     ++   L 
Sbjct: 19  LLNASNVTVEEVRRLLAAGADVNFRGEYGKTPLHL-----YLHYSSEKVKD--IVRLLL- 70

Query: 294 PHNIIPNGFLVHDHAAVIDILTLRKQTPLHLAAEAGQ-LQVCKLLLDLGASIDATDDQGQ 352
                       +  A ++       TPLHL       L V KLL+  GA ++A D  G+
Sbjct: 71  ------------EAGADVNAPERCGFTPLHLYLYNATTLDVIKLLIKAGADVNAKDKVGR 118

Query: 353 KPIHVAAQNNF--PEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIEELMKFDRS 410
            P+HV        P+V ++ LR     V A    G T   +            L+K    
Sbjct: 119 TPLHVYLSGFNINPKVIRLLLRKGAD-VNALDLYGMTPLAV------------LLKS--- 162

Query: 411 GVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGH--NQ 468
                                    ++R+L+ AGA     +    + +H   Q+     +
Sbjct: 163 ------RNAN-------------VELLRLLIDAGADVYAVDDRFRSLLHHHLQSFKPRAR 203

Query: 469 VLEEMRSSKALNVYSKKLGVTALHVAAYFG--QADTVRELLSHVPGTVKSDPPTGASFLG 526
           ++ E+  +      +  LG T LH  A     +   V  LL             G S + 
Sbjct: 204 IVRELIRAGCDPAATDMLGNTPLHSMATGSSCKRSLVLPLLIA-----------GIS-IN 251

Query: 527 ELGSESGMTPLHLAAYSGNENVVRLLLNSAGVQVDAQT 564
                 G TPLH AA   N    R L+   G  ++A +
Sbjct: 252 ARNR-YGQTPLHYAAVFNNPRACRRLIA-LGADINAVS 287

Length = 471

>gnl|CDD|140343 PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

 Score = 62.6 bits (152), Expect = 3e-10
 Identities = 34/75 (45%), Positives = 45/75 (60%)

Query: 53  ALMLLKSGAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASR 112
           A +LL  GA PN    DG+TP+H A   G++  +++LLE G DP   +K G+TPL LA  
Sbjct: 98  ARILLTGGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDKDGKTPLELAEE 157

Query: 113 NCKAEVVDLLIQFVQ 127
           N   EVV LL +  Q
Sbjct: 158 NGFREVVQLLSRHSQ 172

Length = 664

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 56.1 bits (136), Expect = 5e-10
 Identities = 33/111 (29%), Positives = 54/111 (48%), Gaps = 20/111 (18%)

Query: 149 LHYACQVTKAELIPITSKEDQKTVKLLLEAGADVSLQTKQNHETAFHYCAVAGNNDVLTG 208
           LH A +             + + VKLLLE GADV+L      +TA H  A  GN +++  
Sbjct: 1   LHLAAK-----------NGNLELVKLLLEKGADVNLGDT---DTALHLAARNGNLEIVKL 46

Query: 209 MLEQMSGTEISKALNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFD 259
           +LE  +       +N +   G T L +A   G++E+V  +L + A +++ D
Sbjct: 47  LLEHGAD------VNAKDKDGNTALHLAARNGNLEIVKLLLEHGADINLKD 91

Length = 91

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 55.7 bits (135), Expect = 6e-10
 Identities = 34/93 (36%), Positives = 51/93 (54%), Gaps = 8/93 (8%)

Query: 14  LHIAARVKDGDRCALMLLKSGAGPNLTN------IAARVKDGDRCALMLLKSGAGPNLTT 67
           LH+AA+  + +    +LL+ GA  NL +      +AAR  + +    +LL+ GA  N   
Sbjct: 1   LHLAAKNGNLE-LVKLLLEKGADVNLGDTDTALHLAARNGNLE-IVKLLLEHGADVNAKD 58

Query: 68  DDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKN 100
            DG T +H AA+ GNL  ++LLLE G D   K+
Sbjct: 59  KDGNTALHLAARNGNLEIVKLLLEHGADINLKD 91

Length = 91

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 59.5 bits (143), Expect = 6e-10
 Identities = 60/243 (24%), Positives = 96/243 (39%), Gaps = 34/243 (13%)

Query: 8   KLRETPLHIAARVKDGDRCALMLLKSGAGPNLTNIAARVKDGDRCALMLLKSGAGPNLTT 67
           K     L +A  +      +    K         +       +   L+ L          
Sbjct: 13  KCFLDLLLVALLLLLSLDLSNPSDKKLNLYLELALLPAASLSEL--LLKLIVDRHLAARD 70

Query: 68  DDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCK-----AEVVDLL 122
            DG+ P+H+AA  G+   ++LLL  G D   K+  G+TPLHLA+ N        EV  LL
Sbjct: 71  LDGRLPLHSAASKGDDKIVKLLLASGADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLL 130

Query: 123 IQFVQNISQEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGADV 182
           ++          L+  N  +EDG + LH+A               D   V+LLLEAGAD 
Sbjct: 131 LEAG------ADLDVNNLRDEDGNTPLHWAAL-----------NGDADIVELLLEAGADP 173

Query: 183 SLQTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKA---------LNKQTSIGWTPL 233
           + +      TA    A  G  +++  +L++     + K          ++K+  +  T L
Sbjct: 174 NSRNS-YGVTALDPAAKNGRIELVKLLLDKGLHLSLLKFNLEGVANANVSKRNILNLTSL 232

Query: 234 LIA 236
           +IA
Sbjct: 233 IIA 235

Length = 235

>gnl|CDD|165256 PHA02946, PHA02946, ankyin-like protein; Provisional

 Score = 60.1 bits (145), Expect = 1e-09
 Identities = 78/294 (26%), Positives = 131/294 (44%), Gaps = 43/294 (14%)

Query: 56  LLKSGAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCK 115
           LL  G  PN T DDG  P+H A+K  N   + +LL  G DP   +K  +TPL+  S    
Sbjct: 58  LLHRGYSPNETDDDGNYPLHIASKINNNRIVAMLLTHGADPNACDKQHKTPLYYLSGTDD 117

Query: 116 A--EVVDLLIQFVQNISQEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVK 173
              E ++LL+Q+   I+        NSV+E+G   L  AC           +   ++  K
Sbjct: 118 EVIERINLLVQYGAKIN--------NSVDEEGCGPL-LAC-----------TDPSERVFK 157

Query: 174 LLLEAGADVSLQTK--QNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWT 231
            ++  G +  +  K  +NH    H   ++ N    T  +  M    IS +  K    G T
Sbjct: 158 KIMSIGFEARIVDKFGKNH---IHRHLMSDNPKAST--ISWMMKLGISPS--KPDHDGNT 210

Query: 232 PLLIACNR--GHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVSSGKSLKHSVMS 289
           PL I C++   +++++N +L +   V+  ++ G S L L      +K  S   L + ++S
Sbjct: 211 PLHIVCSKTVKNVDIINLLLPS-TDVNKQNKFGDSPLTL-----LIKTLSPAHLINKLLS 264

Query: 290 FRLPPHNIIPNGFLVHDHAAVIDILTLRKQ----TPLHLAAEAGQLQVCKLLLD 339
                 +   N  + +D   V++I+  + +    T   +A E G ++  K LLD
Sbjct: 265 TSNVITDQTVNICIFYDRDDVLEIINDKGKQYDSTDFKMAVEVGSIRCVKYLLD 318

Length = 446

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 57.1 bits (137), Expect = 4e-09
 Identities = 51/211 (24%), Positives = 82/211 (38%), Gaps = 23/211 (10%)

Query: 353 KPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGV 412
             + +        +  + L     L   + K  N    +A +  +      L       +
Sbjct: 7   ALLLINKCFLDLLLVALLLLLSLDLSNPSDKKLNLYLELALLPAASLSELLLKLIVDRHL 66

Query: 413 ISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGH------ 466
            +         PL  AA  G   +V++L+ +GA    ++  G T +HLAA NG+      
Sbjct: 67  AARDLDG--RLPLHSAASKGDDKIVKLLLASGADVNAKDADGDTPLHLAALNGNPPEGNI 124

Query: 467 --NQVLEEMRSSKALNVYSKKLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASF 524
              ++L E  +   +N    + G T LH AA  G AD V  LL        +DP +  S 
Sbjct: 125 EVAKLLLEAGADLDVNNLRDEDGNTPLHWAALNGDADIVELLLEA-----GADPNSRNS- 178

Query: 525 LGELGSESGMTPLHLAAYSGNENVVRLLLNS 555
                   G+T L  AA +G   +V+LLL+ 
Sbjct: 179 -------YGVTALDPAAKNGRIELVKLLLDK 202

Length = 235

>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional

 Score = 58.7 bits (142), Expect = 4e-09
 Identities = 45/146 (30%), Positives = 67/146 (45%), Gaps = 31/146 (21%)

Query: 43  AARVKDGDRCALMLLKSGAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKI 102
           A   KD     L+L   GA  N+      +P+H A K+ N   + +LLE+G     ++K 
Sbjct: 175 ATENKDQRLTELLLSY-GANVNIPDKTNNSPLHHAVKHYNKPIVHILLENGASTDARDKC 233

Query: 103 GETPLHLASRNCKA-EVVDLLIQFVQNISQEKVLEYVNSVNED----GASALHYACQVTK 157
           G TPLH++   CK  +++ LL            LE+   VN      G +ALH       
Sbjct: 234 GNTPLHISVGYCKDYDILKLL------------LEHGVDVNAKSYILGLTALH------- 274

Query: 158 AELIPITSKEDQKTVKLLLEAGADVS 183
                 + K ++K  KLLLE GAD++
Sbjct: 275 -----SSIKSERKL-KLLLEYGADIN 294

Length = 477

>gnl|CDD|140343 PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

 Score = 58.0 bits (140), Expect = 1e-08
 Identities = 22/54 (40%), Positives = 33/54 (61%)

Query: 319 QTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLR 372
           +TPLH+A   G +QV ++LL+ GA     D  G+ P+ +A +N F EV Q+  R
Sbjct: 116 RTPLHIACANGHVQVVRVLLEFGADPTLLDKDGKTPLELAEENGFREVVQLLSR 169

Length = 664

>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional

 Score = 56.2 bits (135), Expect = 2e-08
 Identities = 53/222 (23%), Positives = 91/222 (40%), Gaps = 30/222 (13%)

Query: 168 DQKTVKLLLEAGADVSLQTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTS 227
           D + +KLL++ GA   ++   + E+  H     G+   +  +L    G        K   
Sbjct: 47  DSEAIKLLMKHGAIPDVKYP-DIESELHDAVEEGDVKAVEELL--DLGKFADDVFYKD-- 101

Query: 228 IGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVSSGKSLKHSV 287
            G TPL +A     ++++  ++   A  D+ + +  S LHLA   G +K           
Sbjct: 102 -GMTPLHLATILKKLDIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIE-------- 152

Query: 288 MSFRLPPHNIIPNGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDAT 347
                          L+ DH A +DI      TPL +A   G + +CK+LLD GA+ID  
Sbjct: 153 ---------------LLIDHKACLDIEDCCGCTPLIIAMAKGDIAICKMLLDSGANIDYF 197

Query: 348 DDQGQ-KPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTC 388
              G    +  A +NN  ++ ++F++           +G  C
Sbjct: 198 GKNGCVAALCYAIENNKIDIVRLFIKRGADCNIMFMIEGEEC 239

Length = 413

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 56.1 bits (135), Expect = 2e-08
 Identities = 59/240 (24%), Positives = 102/240 (42%), Gaps = 20/240 (8%)

Query: 231 TPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVSSGKSLK----HS 286
           TPL+ A   G  ++V   + + A ++  + +    L  A     +K+ +   +K    + 
Sbjct: 37  TPLIDAIRSGDAKIVELFIKHGADINHINTKIPHPLLTA-----IKIGAHDIIKLLIDNG 91

Query: 287 VMSFRLP-P--HNIIPNGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGAS 343
           V +  LP P     +    L  D    ++I     +T LH A + G L+  K+L + GA 
Sbjct: 92  VDTSILPIPCIEKDMIKTIL--DCGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGAD 149

Query: 344 IDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIEE 403
           ++  DD G  PIH+A ++NF ++ ++ L    +       +G +  H AA  G    I+ 
Sbjct: 150 VNIEDDNGCYPIHIAIKHNFFDIIKLLLE-KGAYANVKDNNGESPLHNAAEYGDYACIKL 208

Query: 404 LMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQ 463
           L+      +   +N     TPL  A    H      L+   AS  D++  G T +H A  
Sbjct: 209 LIDHGNHIMNKCKNGF---TPLHNAII--HNRSAIELLINNASINDQDIDGSTPLHHAIN 263

Length = 434

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 51.1 bits (123), Expect = 3e-08
 Identities = 27/84 (32%), Positives = 47/84 (55%), Gaps = 8/84 (9%)

Query: 194 FHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIACNRGHMELVNTMLNNHA 253
            H  A  GN +++  +LE   G +++      T    T L +A   G++E+V  +L + A
Sbjct: 1   LHLAAKNGNLELVKLLLE--KGADVN---LGDTD---TALHLAARNGNLEIVKLLLEHGA 52

Query: 254 RVDVFDQEGRSALHLAAEHGYLKV 277
            V+  D++G +ALHLAA +G L++
Sbjct: 53  DVNAKDKDGNTALHLAARNGNLEI 76

Length = 91

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 54.1 bits (129), Expect = 4e-08
 Identities = 44/169 (26%), Positives = 73/169 (43%), Gaps = 15/169 (8%)

Query: 383 KDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHAN-----VV 437
            DG    H AA +G   +++ L        ++A++   + TPL LAA  G+       V 
Sbjct: 71  LDGRLPLHSAASKGDDKIVKLL--LASGADVNAKDADGD-TPLHLAALNGNPPEGNIEVA 127

Query: 438 RVLVKAGASCTD---ENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSK-KLGVTALHV 493
           ++L++AGA        ++ G T +H AA NG   ++E +  + A +  S+   GVTAL  
Sbjct: 128 KLLLEAGADLDVNNLRDEDGNTPLHWAALNGDADIVELLLEAGA-DPNSRNSYGVTALDP 186

Query: 494 AAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGS--ESGMTPLHLA 540
           AA  G+ + V+ LL                    +       +T L +A
Sbjct: 187 AAKNGRIELVKLLLDKGLHLSLLKFNLEGVANANVSKRNILNLTSLIIA 235

Length = 235

>gnl|CDD|165103 PHA02736, PHA02736, Viral ankyrin protein; Provisional

 Score = 51.8 bits (124), Expect = 7e-08
 Identities = 49/176 (27%), Positives = 68/176 (38%), Gaps = 33/176 (18%)

Query: 90  LEDGGDPMYKNKIGETPLHLASRNCKAEVVDLLIQFVQNISQEK---VLEYVNSVNEDGA 146
            E+       +  GE  LH   RN    V DLL  F   IS E    VLEY    N  G 
Sbjct: 4   PEEIIFASEPDIEGENILHYLCRN--GGVTDLL-AFKNAISDENRYLVLEY----NRHGK 56

Query: 147 SALHYACQVTKAELIPITSKED----QKTVKLLLEAGADVSLQTKQNHETAFHYCAVAGN 202
             +H            I S  D    Q+ +KLL+E GAD++ + +    T  H      N
Sbjct: 57  QCVH------------IVSNPDKADPQEKLKLLMEWGADINGKERVFGNTPLHIAVYTQN 104

Query: 203 NDVLTGMLEQMS-GTEISKALNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDV 257
            ++ T +  Q     EI     K      TP  +AC R   +++N +    A+  V
Sbjct: 105 YELATWLCNQPGVNMEILNYAFK------TPYYVACERHDAKMMNILRAKGAQCKV 154

Length = 154

>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional

 Score = 53.8 bits (129), Expect = 1e-07
 Identities = 42/190 (22%), Positives = 76/190 (40%), Gaps = 4/190 (2%)

Query: 320 TPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVT 379
           +P+ LA +    +  KLL+  GA  D      +  +H A +    +  +  L        
Sbjct: 37  SPIKLAMKFRDSEAIKLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVEELLDLGKFADD 96

Query: 380 ATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRV 439
              KDG T  H+A +   + +++ L+       I   ++ +   PL LA   G    + +
Sbjct: 97  VFYKDGMTPLHLATILKKLDIMKLLIARGADPDIPNTDKFS---PLHLAVMMGDIKGIEL 153

Query: 440 LVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKA-LNVYSKKLGVTALHVAAYFG 498
           L+   A    E+  G T + +A   G   + + +  S A ++ + K   V AL  A    
Sbjct: 154 LIDHKACLDIEDCCGCTPLIIAMAKGDIAICKMLLDSGANIDYFGKNGCVAALCYAIENN 213

Query: 499 QADTVRELLS 508
           + D VR  + 
Sbjct: 214 KIDIVRLFIK 223

Length = 413

>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional

 Score = 54.1 bits (130), Expect = 1e-07
 Identities = 35/142 (24%), Positives = 63/142 (44%), Gaps = 20/142 (14%)

Query: 55  MLLKSGAGPNLTTDD-GQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRN 113
           +LL  GA  N+     G T +H A +  +    +LLL  G +    +K   +PLH A ++
Sbjct: 152 LLLSYGADINMKDRHKGNTALHYATENKDQRLTELLLSYGANVNIPDKTNNSPLHHAVKH 211

Query: 114 CKAEVVDLLIQFVQNISQEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVK 173
               +V +L++   +          ++ ++ G + LH +          +   +D   +K
Sbjct: 212 YNKPIVHILLENGAST---------DARDKCGNTPLHIS----------VGYCKDYDILK 252

Query: 174 LLLEAGADVSLQTKQNHETAFH 195
           LLLE G DV+ ++     TA H
Sbjct: 253 LLLEHGVDVNAKSYILGLTALH 274

Length = 477

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 48.4 bits (116), Expect = 1e-07
 Identities = 21/52 (40%), Positives = 30/52 (57%)

Query: 72  TPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVVDLLI 123
           T +H AA  G L  ++ LLE G D    ++ G T LH+A+ N   EV+ LL+
Sbjct: 3   TALHKAAISGRLELVKYLLEKGVDINRTDEDGNTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 47.7 bits (114), Expect = 2e-07
 Identities = 16/56 (28%), Positives = 27/56 (48%)

Query: 303 LVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVA 358
           L+      ++       TPLHLAA+ G L++ + LL  G  ++  D  G   + +A
Sbjct: 1   LLEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLLKPGVDLNLRDSDGLTALDLA 56

Length = 56

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 48.0 bits (115), Expect = 3e-07
 Identities = 33/100 (33%), Positives = 50/100 (50%), Gaps = 23/100 (23%)

Query: 107 LHLASRNCKAEVVDLLIQFVQNISQEKVLEYVNSVNEDGASALHYACQVTKAELIPITSK 166
           LHLA++N   E+V LL++   +         VN  + D  +ALH A +            
Sbjct: 1   LHLAAKNGNLELVKLLLEKGAD---------VNLGDTD--TALHLAAR-----------N 38

Query: 167 EDQKTVKLLLEAGADVSLQTKQNHETAFHYCAVAGNNDVL 206
            + + VKLLLE GADV+ + K +  TA H  A  GN +++
Sbjct: 39  GNLEIVKLLLEHGADVNAKDK-DGNTALHLAARNGNLEIV 77

Length = 91

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 52.8 bits (126), Expect = 4e-07
 Identities = 71/308 (23%), Positives = 133/308 (43%), Gaps = 19/308 (6%)

Query: 166 KEDQKTVKLLLEAGADVSLQTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQ 225
           +++    ++LLE GADV+ +      T  HY A  GN  ++  +L    G ++    N  
Sbjct: 155 QDELLIAEMLLEGGADVNAKDIYC-ITPIHYAAERGNAKMVNLLLSY--GADV----NII 207

Query: 226 TSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSAL-HLAAEHGYLKVSSGKSLK 284
                + L  A +  +++ +  +++N + ++  D     A+ +   E   L   +G S+ 
Sbjct: 208 ALDDLSVLECAVDSKNIDTIKAIIDNRSNINKNDLSLLKAIRNEDLETSLLLYDAGFSVN 267

Query: 285 HSVMSFRLPPHNIIPNGFLVH------DHAAVIDILTLRKQTPLHLAAEAG-QLQVCKLL 337
                   P H+      L        +  A ++   ++ +TPL+L A+ G   +  + L
Sbjct: 268 SIDDCKNTPLHHASQAPSLSRLVPKLLERGADVNAKNIKGETPLYLMAKNGYDTENIRTL 327

Query: 338 LDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGS 397
           + LGA ++A D     P+H A+  +  +   I L    + V A      T  H AA++ +
Sbjct: 328 IMLGADVNAADRLYITPLHQASTLDRNKDIVITLLELGANVNARDYCDKTPIHYAAVRNN 387

Query: 398 VGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANV-VRVLVKAGASCTDENKTGFT 456
           V +I  L+  D    I A ++    T L  A  G +  + V+ L+  GA+   +NK   T
Sbjct: 388 VVIINTLL--DYGADIEALSQKI-GTALHFALCGTNPYMSVKTLIDRGANVNSKNKDLST 444

Query: 457 AVHLAAQN 464
            +H A + 
Sbjct: 445 PLHYACKK 452

Length = 682

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 46.2 bits (110), Expect = 6e-07
 Identities = 22/48 (45%), Positives = 28/48 (58%)

Query: 63  PNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLA 110
            N T  +G TP+H AAKYG L  +Q LL+ G D   ++  G T L LA
Sbjct: 9   LNATDGNGNTPLHLAAKYGALELVQWLLKPGVDLNLRDSDGLTALDLA 56

Length = 56

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 45.6 bits (109), Expect = 6e-07
 Identities = 18/31 (58%), Positives = 22/31 (70%)

Query: 319 QTPLHLAAEAGQLQVCKLLLDLGASIDATDD 349
            TPLHLAA  G L+V KLLL+ GA ++A D 
Sbjct: 3   NTPLHLAARNGHLEVVKLLLEAGADVNARDK 33

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|233161 TIGR00870, trp, transient-receptor-potential calcium channel protein

 Score = 52.0 bits (125), Expect = 7e-07
 Identities = 42/183 (22%), Positives = 68/183 (37%), Gaps = 30/183 (16%)

Query: 228 IGWTPLLIACNRG-HMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVSSGKSLKHS 286
           +G + L +A     ++EL   +LN   R  V    G + LH  +      V        +
Sbjct: 51  LGRSALFVAAIENENLELTELLLNLSCRGAV----GDTLLHAISLEYVDAV-------EA 99

Query: 287 VMSFRLPPHNIIPNGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDA 346
           ++   L          L +D        T    T LHLAA     ++ KLLL+ GAS+ A
Sbjct: 100 ILLHLLAAFRKSGPLELANDQY--TSEFT-PGITALHLAAHRQNYEIVKLLLERGASVPA 156

Query: 347 ---------TDDQ-----GQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIA 392
                    +        G+ P++ AA    P +  +     P+ +      GNT  H+ 
Sbjct: 157 RACGDFFVKSQGVDSFYHGESPLNAAACLGSPSIVALLSE-DPADILTADSLGNTLLHLL 215

Query: 393 AMQ 395
            M+
Sbjct: 216 VME 218

The Transient Receptor Potential Ca2+ Channel (TRP-CC) Family (TC. 1.A.4)The TRP-CC family has also been called the store-operated calcium channel (SOC) family. The prototypical members include the Drosophila retinal proteinsTRP and TRPL (Montell and Rubin, 1989; Hardie and Minke, 1993). SOC members of the family mediate the entry of extracellular Ca2+ into cells in responseto depletion of intracellular Ca2+ stores (Clapham, 1996) and agonist stimulated production of inositol-1,4,5 trisphosphate (IP3). One member of the TRP-CCfamily, mammalian Htrp3, has been shown to form a tight complex with the IP3 receptor (TC #1.A.3.2.1). This interaction is apparently required for IP3 tostimulate Ca2+ release via Htrp3. The vanilloid receptor subtype 1 (VR1), which is the receptor for capsaicin (the ?hot? ingredient in chili peppers) and servesas a heat-activated ion channel in the pain pathway (Caterina et al., 1997), is also a member of this family. The stretch-inhibitable non-selective cation channel(SIC) is identical to the vanilloid receptor throughout all of its first 700 residues, but it exhibits a different sequence in its last 100 residues. VR1 and SICtransport monovalent cations as well as Ca2+. VR1 is about 10x more permeable to Ca2+ than to monovalent ions. Ca2+ overload probably causes cell deathafter chronic exposure to capsaicin. (McCleskey and Gold, 1999) [Transport and binding proteins, Cations and iron carrying compounds]. Length = 743

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 45.3 bits (108), Expect = 1e-06
 Identities = 20/49 (40%), Positives = 30/49 (61%)

Query: 229 GWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKV 277
           G T L  A   G +ELV  +L     ++  D++G +ALH+AAE+G L+V
Sbjct: 1   GRTALHKAAISGRLELVKYLLEKGVDINRTDEDGNTALHIAAENGNLEV 49

Length = 54

>gnl|CDD|215625 PLN03192, PLN03192, Voltage-dependent potassium channel; Provisional

 Score = 50.3 bits (120), Expect = 2e-06
 Identities = 34/146 (23%), Positives = 57/146 (39%), Gaps = 35/146 (23%)

Query: 337 LLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNT--------- 387
           LL      D  D +G+ P+H+AA   + +   + L+ H   V     +GNT         
Sbjct: 544 LLKAKLDPDIGDSKGRTPLHIAASKGYEDCVLVLLK-HACNVHIRDANGNTALWNAISAK 602

Query: 388 ----------CAHI------------AAMQGSVGVIEELMKFDRSGVISARNRVTEATPL 425
                      A I            AA +  +  ++EL+K   +  + + +    AT L
Sbjct: 603 HHKIFRILYHFASISDPHAAGDLLCTAAKRNDLTAMKELLKQGLN--VDSEDH-QGATAL 659

Query: 426 QLAAEGGHANVVRVLVKAGASCTDEN 451
           Q+A    H ++VR+L+  GA     N
Sbjct: 660 QVAMAEDHVDMVRLLIMNGADVDKAN 685

Length = 823

>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional

 Score = 49.5 bits (118), Expect = 3e-06
 Identities = 58/263 (22%), Positives = 97/263 (36%), Gaps = 45/263 (17%)

Query: 321 PLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQN----NFPEVAQIFLRAHPS 376
           PLH A EA  L V K LL  G +++  D +   P+H+  +        E+ +   +    
Sbjct: 40  PLHQAVEARNLDVVKSLLTRGHNVNQPDHRDLTPLHIICKEPNKLGMKEMIRSINKCSVF 99

Query: 377 LVTATTKDG--NTCAHIAAM------QGSVGV-IEELMKFDRSGVISAR----------- 416
                 KD   N    I  +      +    + +  + K  +  +I A            
Sbjct: 100 YTLVAIKDAFNNRNVEIFKIILTNRYKNIQTIDLVYIDKKSKDDIIEAEITKLLLSYGAD 159

Query: 417 -NRVTE---ATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEE 472
            N        T L  A E     +  +L+  GA+    +KT  + +H A ++ +  ++  
Sbjct: 160 INMKDRHKGNTALHYATENKDQRLTELLLSYGANVNIPDKTNNSPLHHAVKHYNKPIVHI 219

Query: 473 MRSSKALNVYSKKLGVTALHVA-AYFGQADTVRELLSH-VPGTVKSDPPTGASFLGELGS 530
           +  + A      K G T LH++  Y    D ++ LL H V    KS              
Sbjct: 220 LLENGASTDARDKCGNTPLHISVGYCKDYDILKLLLEHGVDVNAKS-------------Y 266

Query: 531 ESGMTPLHLAAYSGNENVVRLLL 553
             G+T LH +  S  E  ++LLL
Sbjct: 267 ILGLTALHSSIKS--ERKLKLLL 287

Length = 477

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 44.2 bits (105), Expect = 3e-06
 Identities = 18/49 (36%), Positives = 30/49 (61%)

Query: 423 TPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLE 471
           T L  AA  G   +V+ L++ G      ++ G TA+H+AA+NG+ +VL+
Sbjct: 3   TALHKAAISGRLELVKYLLEKGVDINRTDEDGNTALHIAAENGNLEVLK 51

Length = 54

>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional

 Score = 47.3 bits (112), Expect = 1e-05
 Identities = 36/122 (29%), Positives = 56/122 (45%), Gaps = 11/122 (9%)

Query: 12  TPLHIAARVKDGDRCALMLLKSGAGPNLTN--------IAARVKDGDRCALMLLKSGAGP 63
           TPLH+A  +K  D   L L+  GA P++ N        +A  + D     L L+   A  
Sbjct: 104 TPLHLATILKKLDIMKL-LIARGADPDIPNTDKFSPLHLAVMMGDIKGIEL-LIDHKACL 161

Query: 64  NLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGE-TPLHLASRNCKAEVVDLL 122
           ++    G TP+  A   G++   ++LL+ G +  Y  K G    L  A  N K ++V L 
Sbjct: 162 DIEDCCGCTPLIIAMAKGDIAICKMLLDSGANIDYFGKNGCVAALCYAIENNKIDIVRLF 221

Query: 123 IQ 124
           I+
Sbjct: 222 IK 223

Length = 413

>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional

 Score = 47.6 bits (113), Expect = 1e-05
 Identities = 63/324 (19%), Positives = 117/324 (36%), Gaps = 52/324 (16%)

Query: 130 SQEKVLEYVNSVNEDGASALHYACQVTKAELIPI------TSKEDQKTVKLLLEAGADVS 183
           + E +L+Y+  ++       H     T A LIP           +   VK LL  G +V+
Sbjct: 12  NYETILKYIEYID-------HTENYSTSASLIPFIPLHQAVEARNLDVVKSLLTRGHNVN 64

Query: 184 LQTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIACNRGHME 243
            Q      T  H      N   +  M+  ++   +   L             A N  ++E
Sbjct: 65  -QPDHRDLTPLHIICKEPNKLGMKEMIRSINKCSVFYTLVAIKD--------AFNNRNVE 115

Query: 244 LVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVSSGKSLKHSVMSFRLPPHNIIPNGFL 303
           +   +L N      +       L    +     +   +  K                  L
Sbjct: 116 IFKIILTNR-----YKNIQTIDLVYIDKKSKDDIIEAEITK------------------L 152

Query: 304 VHDHAAVIDILTLRK-QTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNN 362
           +  + A I++    K  T LH A E    ++ +LLL  GA+++  D     P+H A ++ 
Sbjct: 153 LLSYGADINMKDRHKGNTALHYATENKDQRLTELLLSYGANVNIPDKTNNSPLHHAVKHY 212

Query: 363 FPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIEEL-MKFDRSGVISARNRVTE 421
              +  I L  + +   A  K GNT  HI+   G     + L +  +    ++A++ +  
Sbjct: 213 NKPIVHILLE-NGASTDARDKCGNTPLHISV--GYCKDYDILKLLLEHGVDVNAKSYILG 269

Query: 422 ATPLQLAAEGGHANVVRVLVKAGA 445
            T L  + +      +++L++ GA
Sbjct: 270 LTALHSSIKS--ERKLKLLLEYGA 291

Length = 477

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 42.6 bits (101), Expect = 1e-05
 Identities = 25/67 (37%), Positives = 32/67 (47%), Gaps = 13/67 (19%)

Query: 487 GVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNE 546
           G TALH AA  G+ + V+ LL             G         E G T LH+AA +GN 
Sbjct: 1   GRTALHKAAISGRLELVKYLLEK-----------GVDIN--RTDEDGNTALHIAAENGNL 47

Query: 547 NVVRLLL 553
            V++LLL
Sbjct: 48  EVLKLLL 54

Length = 54

>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional

 Score = 46.9 bits (111), Expect = 2e-05
 Identities = 56/259 (21%), Positives = 98/259 (37%), Gaps = 31/259 (11%)

Query: 189 NHETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIACNRGHMELVNTM 248
             + A     + G  D+   +L+      I    N +   G +P+ +A      E +  +
Sbjct: 1   MDQVALCDAILFGELDIARRLLD------IGINPNFEIYDGISPIKLAMKFRDSEAIKLL 54

Query: 249 LNNHARVDVFDQEGRSALHLAAEHGYLKVSSGKSLKHSVMSFRLPPHNIIPNGFLVHDHA 308
           + + A  DV   +  S LH A E G +K     +++  +              F      
Sbjct: 55  MKHGAIPDVKYPDIESELHDAVEEGDVK-----AVEELLDL----------GKF------ 93

Query: 309 AVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQ 368
              D+      TPLHLA    +L + KLL+  GA  D  +     P+H+A      +  +
Sbjct: 94  -ADDVFYKDGMTPLHLATILKKLDIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIE 152

Query: 369 IFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLA 428
           + +  H + +      G T   IA  +G + + + L+  D    I    +      L  A
Sbjct: 153 LLID-HKACLDIEDCCGCTPLIIAMAKGDIAICKMLL--DSGANIDYFGKNGCVAALCYA 209

Query: 429 AEGGHANVVRVLVKAGASC 447
            E    ++VR+ +K GA C
Sbjct: 210 IENNKIDIVRLFIKRGADC 228

Length = 413

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 47.3 bits (112), Expect = 2e-05
 Identities = 62/278 (22%), Positives = 110/278 (39%), Gaps = 50/278 (17%)

Query: 135 LEYVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGADVS-LQTKQNHE-- 191
           +E +  + ++  + ++ +   T   LI      D K V+L ++ GAD++ + TK  H   
Sbjct: 14  IEAIEKIIKNKGNCINISVDETTTPLIDAIRSGDAKIVELFIKHGADINHINTKIPHPLL 73

Query: 192 TAFHYCAVAGNNDVLTGMLEQMSGTEI--SKALNKQT---------------SIGWTPLL 234
           TA       G +D++  +++    T I     + K                 +   T L 
Sbjct: 74  TAIK----IGAHDIIKLLIDNGVDTSILPIPCIEKDMIKTILDCGIDVNIKDAELKTFLH 129

Query: 235 IACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVSSGKSLKHSVMSFRLPP 294
            A  +G +E +  +    A V++ D  G   +H+A +H +                    
Sbjct: 130 YAIKKGDLESIKMLFEYGADVNIEDDNGCYPIHIAIKHNF-------------------- 169

Query: 295 HNIIPNGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKP 354
            +II    L+ +  A  ++     ++PLH AAE G     KLL+D G  I      G  P
Sbjct: 170 FDIIK---LLLEKGAYANVKDNNGESPLHNAAEYGDYACIKLLIDHGNHIMNKCKNGFTP 226

Query: 355 IHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIA 392
           +H A  +N    + I L  + + +     DG+T  H A
Sbjct: 227 LHNAIIHN---RSAIELLINNASINDQDIDGSTPLHHA 261

Length = 434

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 41.0 bits (97), Expect = 2e-05
 Identities = 18/32 (56%), Positives = 23/32 (71%), Gaps = 1/32 (3%)

Query: 533 GMTPLHLAAYSGNENVVRLLLNSAGVQVDAQT 564
           G TPLHLAA +G+  VV+LLL  AG  V+A+ 
Sbjct: 2   GNTPLHLAARNGHLEVVKLLL-EAGADVNARD 32

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|215625 PLN03192, PLN03192, Voltage-dependent potassium channel; Provisional

 Score = 46.8 bits (111), Expect = 3e-05
 Identities = 39/160 (24%), Positives = 67/160 (41%), Gaps = 29/160 (18%)

Query: 227 SIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSAL--HLAAEHGYLKVSSGKSLK 284
           S G TPL IA ++G+ + V  +L +   V + D  G +AL   ++A+H            
Sbjct: 556 SKGRTPLHIAASKGYEDCVLVLLKHACNVHIRDANGNTALWNAISAKH------------ 603

Query: 285 HSVMSFRLPPHNIIPNGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASI 344
           H +         I+ +   + D  A  D+L          AA+   L   K LL  G ++
Sbjct: 604 HKIF-------RILYHFASISDPHAAGDLLCT--------AAKRNDLTAMKELLKQGLNV 648

Query: 345 DATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKD 384
           D+ D QG   + VA   +  ++ ++ +     +  A T D
Sbjct: 649 DSEDHQGATALQVAMAEDHVDMVRLLIMNGADVDKANTDD 688

Length = 823

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 45.3 bits (107), Expect = 5e-05
 Identities = 48/242 (19%), Positives = 100/242 (41%), Gaps = 30/242 (12%)

Query: 320 TPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVT 379
           TPL  A  +G  ++ +L +  GA I+          H+  +   P +  I + AH  ++ 
Sbjct: 37  TPLIDAIRSGDAKIVELFIKHGADIN----------HINTKIPHPLLTAIKIGAH-DIIK 85

Query: 380 ATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGV-ISARNRVTEATPLQLAAEGGHANVVR 438
               +G   + +        +I+ ++     G+ ++ ++   + T L  A + G    ++
Sbjct: 86  LLIDNGVDTSILPIPCIEKDMIKTILD---CGIDVNIKDAELK-TFLHYAIKKGDLESIK 141

Query: 439 VLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLGVTALHVAAYFG 498
           +L + GA    E+  G   +H+A ++    +++ +    A        G + LH AA +G
Sbjct: 142 MLFEYGADVNIEDDNGCYPIHIAIKHNFFDIIKLLLEKGAYANVKDNNGESPLHNAAEYG 201

Query: 499 QADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVRLLLNSAGV 558
               ++ L+ H    +                ++G TPLH A    N + + LL+N+A +
Sbjct: 202 DYACIKLLIDHGNHIMNK-------------CKNGFTPLHNAIIH-NRSAIELLINNASI 247

Query: 559 QV 560
             
Sbjct: 248 ND 249

Length = 434

>gnl|CDD|215625 PLN03192, PLN03192, Voltage-dependent potassium channel; Provisional

 Score = 46.0 bits (109), Expect = 5e-05
 Identities = 39/148 (26%), Positives = 59/148 (39%), Gaps = 36/148 (24%)

Query: 392 AAMQGSVGVIEELMKFDRSGVIS-ARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDE 450
            A  G+  ++EEL+K      I  ++ R    TPL +AA  G+ + V VL+K   +    
Sbjct: 532 VASTGNAALLEELLKAKLDPDIGDSKGR----TPLHIAASKGYEDCVLVLLKHACNVHIR 587

Query: 451 NKTGFTAVHLAAQNGHNQV----------------------------LEEMRS--SKALN 480
           +  G TA+  A    H+++                            L  M+    + LN
Sbjct: 588 DANGNTALWNAISAKHHKIFRILYHFASISDPHAAGDLLCTAAKRNDLTAMKELLKQGLN 647

Query: 481 VYSK-KLGVTALHVAAYFGQADTVRELL 507
           V S+   G TAL VA      D VR L+
Sbjct: 648 VDSEDHQGATALQVAMAEDHVDMVRLLI 675

Length = 823

>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional

 Score = 45.4 bits (107), Expect = 6e-05
 Identities = 47/182 (25%), Positives = 76/182 (41%), Gaps = 9/182 (4%)

Query: 329 GQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQI-FLRAHPSLVTATTKDGNT 387
           G+L + + LLD+G + +     G  PI +A +  F +   I  L  H ++      D  +
Sbjct: 13  GELDIARRLLDIGINPNFEIYDGISPIKLAMK--FRDSEAIKLLMKHGAIPDVKYPDIES 70

Query: 388 CAHIAAMQGSVGVIEELMKFDR--SGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGA 445
             H A  +G V  +EEL+   +    V          TPL LA      +++++L+  GA
Sbjct: 71  ELHDAVEEGDVKAVEELLDLGKFADDVFYKDGM----TPLHLATILKKLDIMKLLIARGA 126

Query: 446 SCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLGVTALHVAAYFGQADTVRE 505
                N   F+ +HLA   G  + +E +   KA        G T L +A   G     + 
Sbjct: 127 DPDIPNTDKFSPLHLAVMMGDIKGIELLIDHKACLDIEDCCGCTPLIIAMAKGDIAICKM 186

Query: 506 LL 507
           LL
Sbjct: 187 LL 188

Length = 413

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 42.0 bits (99), Expect = 1e-04
 Identities = 28/83 (33%), Positives = 36/83 (43%), Gaps = 27/83 (32%)

Query: 8   KLRETPLHIAARVKDGDRCALMLLKSGAGPNLTNIAARVKDGDRCALMLLKSGAGPNLTT 67
           K   TPLH+AAR  + D                              +LLK GA  N   
Sbjct: 71  KDGNTPLHLAARNGNLD---------------------------VVKLLLKHGADVNARD 103

Query: 68  DDGQTPVHAAAKYGNLVTLQLLL 90
            DG+TP+H AAK G+L  ++LLL
Sbjct: 104 KDGRTPLHLAAKNGHLEVVKLLL 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 40.0 bits (94), Expect = 1e-04
 Identities = 16/39 (41%), Positives = 22/39 (56%)

Query: 423 TPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLA 461
           TPL LAA+ G   +V+ L+K G      +  G TA+ LA
Sbjct: 18  TPLHLAAKYGALELVQWLLKPGVDLNLRDSDGLTALDLA 56

Length = 56

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 39.1 bits (92), Expect = 1e-04
 Identities = 16/33 (48%), Positives = 23/33 (69%)

Query: 69  DGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNK 101
           DG TP+H AA+ G+L  ++LLLE G D   ++K
Sbjct: 1   DGNTPLHLAARNGHLEVVKLLLEAGADVNARDK 33

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 38.8 bits (91), Expect = 3e-04
 Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 1/54 (1%)

Query: 38 NLTNIAARVKDGDRCAL-MLLKSGAGPNLTTDDGQTPVHAAAKYGNLVTLQLLL 90
            T +      G    +  LL+ G   N T +DG T +H AA+ GNL  L+LLL
Sbjct: 1  GRTALHKAAISGRLELVKYLLEKGVDINRTDEDGNTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|140343 PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

 Score = 43.0 bits (101), Expect = 4e-04
 Identities = 26/72 (36%), Positives = 38/72 (52%), Gaps = 11/72 (15%)

Query: 64  NLTTDDGQTPV----------HAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRN 113
           NLTT++   PV            AA  G+ V  ++LL  G DP  ++  G TPLH+A  N
Sbjct: 67  NLTTEEVIDPVVAHMLTVELCQLAAS-GDAVGARILLTGGADPNCRDYDGRTPLHIACAN 125

Query: 114 CKAEVVDLLIQF 125
              +VV +L++F
Sbjct: 126 GHVQVVRVLLEF 137

Length = 664

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 42.3 bits (100), Expect = 5e-04
 Identities = 33/115 (28%), Positives = 47/115 (40%), Gaps = 10/115 (8%)

Query: 10  RETPLHIAAR-VKDGDRCALMLLKSGAGPNLTNIAAR-----VKDGDRCA----LMLLKS 59
             + LH   +  K   R    L+++G  P  T++        +  G  C     L LL +
Sbjct: 187 FRSLLHHHLQSFKPRARIVRELIRAGCDPAATDMLGNTPLHSMATGSSCKRSLVLPLLIA 246

Query: 60  GAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNC 114
           G   N     GQTP+H AA + N    + L+  G D    +  G TPL L  RN 
Sbjct: 247 GISINARNRYGQTPLHYAAVFNNPRACRRLIALGADINAVSSDGNTPLSLMVRNN 301

Length = 471

>gnl|CDD|197603 smart00248, ANK, ankyrin repeats

 Score = 37.2 bits (87), Expect = 5e-04
 Identities = 20/27 (74%), Positives = 22/27 (81%)

Query: 320 TPLHLAAEAGQLQVCKLLLDLGASIDA 346
           TPLHLAAE G L+V KLLLD GA I+A
Sbjct: 4   TPLHLAAENGNLEVVKLLLDKGADINA 30

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure. Length = 30

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 37.7 bits (88), Expect = 7e-04
 Identities = 18/49 (36%), Positives = 26/49 (53%)

Query: 221 ALNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLA 269
            LN     G TPL +A   G +ELV  +L     +++ D +G +AL LA
Sbjct: 8   DLNATDGNGNTPLHLAAKYGALELVQWLLKPGVDLNLRDSDGLTALDLA 56

Length = 56

>gnl|CDD|197603 smart00248, ANK, ankyrin repeats

 Score = 36.8 bits (86), Expect = 7e-04
 Identities = 15/23 (65%), Positives = 18/23 (78%)

Query: 533 GMTPLHLAAYSGNENVVRLLLNS 555
           G TPLHLAA +GN  VV+LLL+ 
Sbjct: 2   GRTPLHLAAENGNLEVVKLLLDK 24

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure. Length = 30

>gnl|CDD|140343 PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

 Score = 41.0 bits (96), Expect = 0.001
 Identities = 32/116 (27%), Positives = 51/116 (43%), Gaps = 12/116 (10%)

Query: 293 PPHNIIPNGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQ 352
           P HN+     +      V  +LT+       LAA    +   ++LL  GA  +  D  G+
Sbjct: 64  PDHNLTTEEVI---DPVVAHMLTVEL---CQLAASGDAVGA-RILLTGGADPNCRDYDGR 116

Query: 353 KPIHVAAQNNFPEVAQIFLR--AHPSLVTATTKDGNTCAHIAAMQGSVGVIEELMK 406
            P+H+A  N   +V ++ L   A P+L     KDG T   +A   G   V++ L +
Sbjct: 117 TPLHIACANGHVQVVRVLLEFGADPTL---LDKDGKTPLELAEENGFREVVQLLSR 169

Length = 664

>gnl|CDD|140343 PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

 Score = 41.0 bits (96), Expect = 0.001
 Identities = 22/51 (43%), Positives = 31/51 (60%)

Query: 421 EATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLE 471
             TPL +A   GH  VVRVL++ GA  T  +K G T + LA +NG  +V++
Sbjct: 115 GRTPLHIACANGHVQVVRVLLEFGADPTLLDKDGKTPLELAEENGFREVVQ 165

Length = 664

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 36.9 bits (86), Expect = 0.001
 Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 2/57 (3%)

Query: 337 LLDLG-ASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIA 392
           LL+ G   ++ATD  G  P+H+AA+    E+ Q  L      +     DG T   +A
Sbjct: 1   LLEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLL-KPGVDLNLRDSDGLTALDLA 56

Length = 56

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 36.4 bits (85), Expect = 0.001
 Identities = 15/30 (50%), Positives = 20/30 (66%)

Query: 423 TPLQLAAEGGHANVVRVLVKAGASCTDENK 452
           TPL LAA  GH  VV++L++AGA     +K
Sbjct: 4   TPLHLAARNGHLEVVKLLLEAGADVNARDK 33

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|205784 pfam13606, Ank_3, Ankyrin repeat

 Score = 36.5 bits (85), Expect = 0.001
 Identities = 17/28 (60%), Positives = 21/28 (75%)

Query: 319 QTPLHLAAEAGQLQVCKLLLDLGASIDA 346
            TPLHLAA  G L++ KLLL+ GA I+A
Sbjct: 3   NTPLHLAARNGNLELVKLLLEHGADINA 30

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Length = 30

>gnl|CDD|165195 PHA02859, PHA02859, ankyrin repeat protein; Provisional

 Score = 40.2 bits (94), Expect = 0.001
 Identities = 28/135 (20%), Positives = 52/135 (38%), Gaps = 27/135 (20%)

Query: 55  MLLKSGAGPN-LTTDDGQTPVHAAAKYGNLVT---LQLLLEDGGDPMYKNKIGETPLHLA 110
            L+++GA  N  T D+  + +H    +   V    L++L++ G     +++ G+  LH+ 
Sbjct: 71  FLIENGADVNFKTRDNNLSALHHYLSFNKNVEPEILKILIDSGSSITEEDEDGKNLLHMY 130

Query: 111 SRNC--KAEVVDLLIQFVQNISQEKVLEYVNSVNEDGASALH-YACQVTKAELIPITSKE 167
             N   +  V+ LLI    +             + D  + L+ Y           I    
Sbjct: 131 MCNFNVRINVIKLLIDSGVSFLN---------KDFDNNNILYSY-----------ILFHS 170

Query: 168 DQKTVKLLLEAGADV 182
           D+K    L   G D+
Sbjct: 171 DKKIFDFLTSLGIDI 185

Length = 209

>gnl|CDD|165195 PHA02859, PHA02859, ankyrin repeat protein; Provisional

 Score = 39.8 bits (93), Expect = 0.001
 Identities = 42/192 (21%), Positives = 73/192 (38%), Gaps = 48/192 (25%)

Query: 64  NLTTDDGQTPVHAA--AKYGNLVTLQLLLEDGGDPMYKNK-IGETPLH---LASRNCKAE 117
           N   D  +TP+ +       N+  L+ L+E+G D  +K +    + LH     ++N + E
Sbjct: 45  NDCNDLYETPIFSCLEKDKVNVEILKFLIENGADVNFKTRDNNLSALHHYLSFNKNVEPE 104

Query: 118 VVDLLIQFVQNISQEKVLEYVNSVNEDGASALH-YACQVT-KAELIPITSKEDQKTVKLL 175
           ++ +LI    +I            +EDG + LH Y C    +  +I           KLL
Sbjct: 105 ILKILIDSGSSI---------TEEDEDGKNLLHMYMCNFNVRINVI-----------KLL 144

Query: 176 LEAGADVSLQTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKAL-------NKQTSI 228
           +++G  VS   K              NN++L   +   S  +I   L       N+    
Sbjct: 145 IDSG--VSFLNKDFD-----------NNNILYSYILFHSDKKIFDFLTSLGIDINETNKS 191

Query: 229 GWTPLLIACNRG 240
           G+    +   R 
Sbjct: 192 GYNCYDLIKFRN 203

Length = 209

>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional

 Score = 40.7 bits (95), Expect = 0.002
 Identities = 33/135 (24%), Positives = 65/135 (48%), Gaps = 18/135 (13%)

Query: 423 TPLQLAAEGGHANVVRVLVKAGASCTDENKTGF-TAVHLAAQNGHNQVLEE--MRSSKAL 479
           +P++LA +   +  +++L+K GA   D       + +H A + G  + +EE       A 
Sbjct: 37  SPIKLAMKFRDSEAIKLLMKHGA-IPDVKYPDIESELHDAVEEGDVKAVEELLDLGKFAD 95

Query: 480 NVYSKKLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHL 539
           +V+ K  G+T LH+A    + D ++ L++       +DP        ++ +    +PLHL
Sbjct: 96  DVFYKD-GMTPLHLATILKKLDIMKLLIAR-----GADP--------DIPNTDKFSPLHL 141

Query: 540 AAYSGNENVVRLLLN 554
           A   G+   + LL++
Sbjct: 142 AVMMGDIKGIELLID 156

Length = 413

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 36.6 bits (85), Expect = 0.002
 Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 9/65 (13%)

Query: 88  LLLEDGGDPMYKNKIGETPLHLASRNCKAEVVDLLIQFVQNISQEKVLEYVNSVNEDGAS 147
           LL     D    +  G TPLHLA++    E+V  L++   ++         N  + DG +
Sbjct: 1   LLEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLLKPGVDL---------NLRDSDGLT 51

Query: 148 ALHYA 152
           AL  A
Sbjct: 52  ALDLA 56

Length = 56

>gnl|CDD|233161 TIGR00870, trp, transient-receptor-potential calcium channel protein

 Score = 40.8 bits (96), Expect = 0.002
 Identities = 40/162 (24%), Positives = 63/162 (38%), Gaps = 32/162 (19%)

Query: 12  TPLHIAARVKDGDRCALMLLKSGAGPNLTNIAARVKDGDRCALMLLKSGAGPNLTTDDGQ 71
           T LH+AA  +       +LL+ GA     ++ AR   GD           G +     G+
Sbjct: 130 TALHLAA-HRQNYEIVKLLLERGA-----SVPARAC-GDFF-----VKSQGVDSFYH-GE 176

Query: 72  TPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLA-------------SRNCKAEV 118
           +P++AAA  G+   + LL ED  D +  + +G T LHL              S       
Sbjct: 177 SPLNAAACLGSPSIVALLSEDPADILTADSLGNTLLHLLVMENEFKAEYEELSCQMYNFA 236

Query: 119 VDLLIQFVQNISQEKVLEYVNSVNEDGASALHYACQVTKAEL 160
           + LL +   +   E +L      N  G + L  A +  +  L
Sbjct: 237 LSLLDKLRDSKELEVIL------NHQGLTPLKLAAKEGRIVL 272

The Transient Receptor Potential Ca2+ Channel (TRP-CC) Family (TC. 1.A.4)The TRP-CC family has also been called the store-operated calcium channel (SOC) family. The prototypical members include the Drosophila retinal proteinsTRP and TRPL (Montell and Rubin, 1989; Hardie and Minke, 1993). SOC members of the family mediate the entry of extracellular Ca2+ into cells in responseto depletion of intracellular Ca2+ stores (Clapham, 1996) and agonist stimulated production of inositol-1,4,5 trisphosphate (IP3). One member of the TRP-CCfamily, mammalian Htrp3, has been shown to form a tight complex with the IP3 receptor (TC #1.A.3.2.1). This interaction is apparently required for IP3 tostimulate Ca2+ release via Htrp3. The vanilloid receptor subtype 1 (VR1), which is the receptor for capsaicin (the ?hot? ingredient in chili peppers) and servesas a heat-activated ion channel in the pain pathway (Caterina et al., 1997), is also a member of this family. The stretch-inhibitable non-selective cation channel(SIC) is identical to the vanilloid receptor throughout all of its first 700 residues, but it exhibits a different sequence in its last 100 residues. VR1 and SICtransport monovalent cations as well as Ca2+. VR1 is about 10x more permeable to Ca2+ than to monovalent ions. Ca2+ overload probably causes cell deathafter chronic exposure to capsaicin. (McCleskey and Gold, 1999) [Transport and binding proteins, Cations and iron carrying compounds]. Length = 743

>gnl|CDD|140343 PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

 Score = 40.3 bits (94), Expect = 0.003
 Identities = 28/84 (33%), Positives = 38/84 (45%), Gaps = 1/84 (1%)

Query: 426 QLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKK 485
           QLAA G      R+L+  GA     +  G T +H+A  NGH QV+  +    A      K
Sbjct: 88  QLAASGDAVGA-RILLTGGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDK 146

Query: 486 LGVTALHVAAYFGQADTVRELLSH 509
            G T L +A   G  + V+ L  H
Sbjct: 147 DGKTPLELAEENGFREVVQLLSRH 170

Length = 664

>gnl|CDD|233161 TIGR00870, trp, transient-receptor-potential calcium channel protein

 Score = 40.1 bits (94), Expect = 0.003
 Identities = 34/113 (30%), Positives = 52/113 (46%), Gaps = 12/113 (10%)

Query: 454 GFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLGVTALHVAAYFGQADTVRELLSHVPGT 513
           G +A+ +AA    N  L E+  + +       +G T LH  +     D V  +L H+   
Sbjct: 52  GRSALFVAAIENENLELTELLLNLSCRGA---VGDTLLHAIS-LEYVDAVEAILLHL--- 104

Query: 514 VKSDPPTGASFL--GELGSE--SGMTPLHLAAYSGNENVVRLLLNSAGVQVDA 562
           + +   +G   L   +  SE   G+T LHLAA+  N  +V+LLL   G  V A
Sbjct: 105 LAAFRKSGPLELANDQYTSEFTPGITALHLAAHRQNYEIVKLLLER-GASVPA 156

The Transient Receptor Potential Ca2+ Channel (TRP-CC) Family (TC. 1.A.4)The TRP-CC family has also been called the store-operated calcium channel (SOC) family. The prototypical members include the Drosophila retinal proteinsTRP and TRPL (Montell and Rubin, 1989; Hardie and Minke, 1993). SOC members of the family mediate the entry of extracellular Ca2+ into cells in responseto depletion of intracellular Ca2+ stores (Clapham, 1996) and agonist stimulated production of inositol-1,4,5 trisphosphate (IP3). One member of the TRP-CCfamily, mammalian Htrp3, has been shown to form a tight complex with the IP3 receptor (TC #1.A.3.2.1). This interaction is apparently required for IP3 tostimulate Ca2+ release via Htrp3. The vanilloid receptor subtype 1 (VR1), which is the receptor for capsaicin (the ?hot? ingredient in chili peppers) and servesas a heat-activated ion channel in the pain pathway (Caterina et al., 1997), is also a member of this family. The stretch-inhibitable non-selective cation channel(SIC) is identical to the vanilloid receptor throughout all of its first 700 residues, but it exhibits a different sequence in its last 100 residues. VR1 and SICtransport monovalent cations as well as Ca2+. VR1 is about 10x more permeable to Ca2+ than to monovalent ions. Ca2+ overload probably causes cell deathafter chronic exposure to capsaicin. (McCleskey and Gold, 1999) [Transport and binding proteins, Cations and iron carrying compounds]. Length = 743

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 35.3 bits (82), Expect = 0.004
 Identities = 24/77 (31%), Positives = 33/77 (42%), Gaps = 23/77 (29%)

Query: 262 GRSALHLAAEHGYLKVSSGKSLKHSVMSFRLPPHNIIPNGFLVHDHAAVIDILTLRKQTP 321
           GR+ALH AA  G L++     +K                   + +    I+       T 
Sbjct: 1   GRTALHKAAISGRLEL-----VK------------------YLLEKGVDINRTDEDGNTA 37

Query: 322 LHLAAEAGQLQVCKLLL 338
           LH+AAE G L+V KLLL
Sbjct: 38  LHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 34.8 bits (81), Expect = 0.004
 Identities = 13/31 (41%), Positives = 18/31 (58%)

Query: 229 GWTPLLIACNRGHMELVNTMLNNHARVDVFD 259
           G TPL +A   GH+E+V  +L   A V+  D
Sbjct: 2   GNTPLHLAARNGHLEVVKLLLEAGADVNARD 32

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|165108 PHA02741, PHA02741, hypothetical protein; Provisional

 Score = 38.1 bits (88), Expect = 0.004
 Identities = 28/114 (24%), Positives = 51/114 (44%), Gaps = 10/114 (8%)

Query: 99  KNKIGETPLHLASRNCKAEVVDLLIQFVQNISQEKVLEYVNSVNEDGASALHYACQVTKA 158
           KN  GE   H A+R       D++ +F   I  +     +N+ ++ G   +H A +  +A
Sbjct: 17  KNSEGENFFHEAAR---CGCFDIIARFTPFIRGDCHAAALNATDDAGQMCIHIAAEKHEA 73

Query: 159 ELIPITSKEDQKTVKLLLEAGADVSLQTKQNHETAFHYCAVAGNNDVLTGMLEQ 212
           +L         + +  L+E GAD++ Q     +TA H  A   ++D+   +  Q
Sbjct: 74  QLAA-------EIIDHLIELGADINAQEMLEGDTALHLAAHRRDHDLAEWLCCQ 120

Length = 169

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	567
KOG4177|consensus	1143		100.0
KOG4177|consensus	1143		100.0
PHA02876	682	ankyrin repeat protein; Provisional	100.0
PHA02876	682	ankyrin repeat protein; Provisional	100.0
PHA02917	661	ankyrin-like protein; Provisional	100.0
PHA02946	446	ankyin-like protein; Provisional	100.0
PHA02917	661	ankyrin-like protein; Provisional	100.0
PHA02946	446	ankyin-like protein; Provisional	100.0
PHA02730	672	ankyrin-like protein; Provisional	100.0
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	100.0
PHA02730	672	ankyrin-like protein; Provisional	100.0
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	100.0
KOG0510|consensus	929		100.0
KOG0510|consensus	929		100.0
PHA02874	434	ankyrin repeat protein; Provisional	100.0
PHA02874	434	ankyrin repeat protein; Provisional	100.0
PHA03095	471	ankyrin-like protein; Provisional	100.0
PHA03100	480	ankyrin repeat protein; Provisional	100.0
PHA03095	471	ankyrin-like protein; Provisional	100.0
PHA03100	480	ankyrin repeat protein; Provisional	100.0
PHA02878	477	ankyrin repeat protein; Provisional	100.0
PHA02989	494	ankyrin repeat protein; Provisional	100.0
PHA02792	631	ankyrin-like protein; Provisional	100.0
PHA02878	477	ankyrin repeat protein; Provisional	100.0
PHA02791	284	ankyrin-like protein; Provisional	100.0
PHA02989	494	ankyrin repeat protein; Provisional	100.0
KOG0508|consensus	615		100.0
PHA02792	631	ankyrin-like protein; Provisional	100.0
PHA02791	284	ankyrin-like protein; Provisional	100.0
PHA02875	413	ankyrin repeat protein; Provisional	100.0
KOG4412|consensus	226		100.0
PHA02875	413	ankyrin repeat protein; Provisional	100.0
PHA02798	489	ankyrin-like protein; Provisional	100.0
KOG0508|consensus	615		100.0
PHA02798	489	ankyrin-like protein; Provisional	100.0
KOG4412|consensus	226		100.0
KOG0509|consensus	600		99.97
KOG0509|consensus	600		99.97
PHA02795	437	ankyrin-like protein; Provisional	99.97
PHA02795	437	ankyrin-like protein; Provisional	99.96
KOG4369|consensus	2131		99.96
KOG4369|consensus	2131		99.96
PHA02859	209	ankyrin repeat protein; Provisional	99.96
PHA02859	209	ankyrin repeat protein; Provisional	99.96
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.94
KOG0502|consensus	296		99.94
KOG0502|consensus	296		99.93
KOG0507|consensus	854		99.92
KOG0507|consensus	854		99.92
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.92
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.91
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.91
KOG0505|consensus	527		99.9
KOG0514|consensus	452		99.9
PHA02743	166	Viral ankyrin protein; Provisional	99.89
KOG0514|consensus	452		99.87
PHA02741	169	hypothetical protein; Provisional	99.87
PHA02743	166	Viral ankyrin protein; Provisional	99.86
KOG0505|consensus	527		99.86
PHA02884	300	ankyrin repeat protein; Provisional	99.86
PHA02884	300	ankyrin repeat protein; Provisional	99.86
PHA02741	169	hypothetical protein; Provisional	99.86
PHA02736	154	Viral ankyrin protein; Provisional	99.84
PHA02736	154	Viral ankyrin protein; Provisional	99.83
KOG0512|consensus	228		99.82
KOG3676|consensus	782		99.81
KOG0512|consensus	228		99.8
KOG0195|consensus	448		99.77
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.76
KOG3676|consensus	782		99.76
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.74
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.73
KOG0195|consensus	448		99.71
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.7
KOG4214|consensus	117		99.67
KOG4214|consensus	117		99.64
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.6
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.56
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.54
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.5
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.5
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.47
KOG0515|consensus	752		99.46
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.44
KOG0515|consensus	752		99.41
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.41
KOG1710|consensus	396		99.4
KOG1710|consensus	396		99.38
PF13606	30	Ank_3: Ankyrin repeat	99.07
PF13606	30	Ank_3: Ankyrin repeat	99.07
KOG0818|consensus	669		99.03
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.97
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.96
KOG0506|consensus	622		98.91
KOG0783|consensus	1267		98.85
KOG0506|consensus	622		98.84
KOG0783|consensus	1267		98.82
KOG0522|consensus	560		98.72
KOG0818|consensus	669		98.69
KOG0782|consensus	1004		98.64
KOG2384|consensus	223		98.62
KOG0782|consensus	1004		98.58
KOG3609|consensus	822		98.56
KOG0705|consensus	749		98.52
KOG2384|consensus	223		98.49
KOG0522|consensus	560		98.46
KOG0705|consensus	749		98.46
KOG0511|consensus	516		98.39
KOG3609|consensus	822		98.35
KOG0511|consensus	516		98.34
KOG0521|consensus	785		98.18
KOG0521|consensus	785		98.16
KOG0520|consensus	975		97.95
KOG0520|consensus	975		97.79
KOG2505|consensus	591		97.5
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	97.29
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	97.19
KOG2505|consensus	591		96.93
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	96.73
PF03158	192	DUF249: Multigene family 530 protein; InterPro: IP	96.64
PF03158	192	DUF249: Multigene family 530 protein; InterPro: IP	96.57
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	96.28
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	95.37
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	95.11
PLN03077	857	Protein ECB2; Provisional	93.79
PLN03218	1060	maturation of RBCL 1; Provisional	92.77
PLN03077	857	Protein ECB2; Provisional	91.95
PLN03218	1060	maturation of RBCL 1; Provisional	90.92
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	90.05

>KOG4177|consensus

Probab=100.00  E-value=3.2e-59  Score=463.24  Aligned_cols=486  Identities=31%  Similarity=0.441  Sum_probs=401.6

Q ss_pred             cCCCCCChhhHHhhcCChhHHHHHHhhcCCCCChhh------------------------------hHhhhcCchHHHHH
Q psy12891          6 SGKLRETPLHIAARVKDGDRCALMLLKSGAGPNLTN------------------------------IAARVKDGDRCALM   55 (567)
Q Consensus         6 ~~~~~~t~L~~A~~~g~~~~v~~~L~~~g~~~~~~~------------------------------~~a~~~~~~~~~~~   55 (567)
                      .+..|.||||.|++.|+.+ +..+|+..|++++...                              ..++.+.+.++.++
T Consensus       116 ~~~~~lTpLh~aa~~g~~~-~~~~ll~~~a~~~~k~~~g~t~l~~a~~~~~~~ll~~~~~~d~l~~~~~~~~~~~~~~~l  194 (1143)
T KOG4177|consen  116 RDRDGLTPLHCAARKGHVQ-VIELLLQHGAPINIKTKNGLSPLHMAAQVACARLLLEYKAPDYLRLHVAAHCGHARVAKL  194 (1143)
T ss_pred             cccCCCcchhhhcccccHH-HHHHHHHccCCCcccccCCCCchhhhcchhhhHHhhhcccchhhhhhHHhhcchHHHHhh
Confidence            4566777777777777766 4445666666555332                              24555666677777


Q ss_pred             HHhcCCCCCCCCCCCChHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCChhHHHHhcCchhHHHHHHHhhhhhhhhHHh
Q psy12891         56 LLKSGAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVVDLLIQFVQNISQEKVL  135 (567)
Q Consensus        56 Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~~~~~~~~~~~  135 (567)
                      |+...++++..+.+|.||||.||..+.++++++++.+|+++...|..|.||||.|+..|+.+++.+|+++|+.       
T Consensus       195 l~~~~~~~~a~~~~~~tpl~~a~~~nri~~~eLll~~gadv~a~d~~gl~~lh~a~~~g~~~i~~~l~~~ga~-------  267 (1143)
T KOG4177|consen  195 LLDKKADPNASALNGFTPLHIACKKNRIKVVELLLKHGADVSAKDESGLTPLHVAAFMGHLDIVKLLLQHGAS-------  267 (1143)
T ss_pred             hhcccCCccccccCCCCchhhhccccccceeeeeeeccCcCCcccccCccHHHHHHhccchhHHHHHHhcccc-------
Confidence            7777777777777777777777777777777777777777777777777777777777777777777777776       


Q ss_pred             hhhcccccccccHHHHHHHhCCcccccccccccHHHHHHHHHcCCCccccccCCCccHHHHHHhcCCHHHHHHHHHhccC
Q psy12891        136 EYVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGADVSLQTKQNHETAFHYCAVAGNNDVLTGMLEQMSG  215 (567)
Q Consensus       136 ~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~  215 (567)
                        ++..+..+.||+|.|+.           .+..++.++|+++|+++....... .+|+|.|...|..++++.+++.+..
T Consensus       268 --~~~~~vr~~tplh~AA~-----------~~~~e~~~~ll~~ga~~~~~~~~~-kt~l~~a~~~g~~~i~~~~l~~~~~  333 (1143)
T KOG4177|consen  268 --VNVSTVRGETPLHMAAR-----------AGQVEVCKLLLQNGADVLAKARDD-QTPLHIASRLGHEEIVHLLLQAGAT  333 (1143)
T ss_pred             --cCcccccccCcchhhhc-----------cchhhhHhhhhccCcccccccccc-cChhhhhcccchHHHHHHHhhccCC
Confidence              56667777777777776           344555777777777777666554 7777777777777777777776554


Q ss_pred             cchhhhhhcCCCCCChHHHHHHhcCcHHHHHHHHhCCCCCCccCCCCCCHHHHHHHcCCeeeeccccccccccccCCCCC
Q psy12891        216 TEISKALNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVSSGKSLKHSVMSFRLPPH  295 (567)
Q Consensus       216 ~~~~~~~~~~~~~~~~~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~  295 (567)
                      .      +..+..+.+|+|.++..++.++..++...+..-...+..+.+|++.|+.+|..++++                
T Consensus       334 ~------~aar~~g~t~lHlaa~~~~~~~~~~l~~~~~~~~~a~~k~~~pl~la~~~g~~~~v~----------------  391 (1143)
T KOG4177|consen  334 P------NAARTAGYTPLHLAAKEGQVEVAGALLEHGAQRRQAEEKGFTPLHLAVKSGRVSVVE----------------  391 (1143)
T ss_pred             c------cccCcCCcccccHhhhhhhHHHHHHhhccccccCcccccCCcchhhhcccCchhHHH----------------
Confidence            3      456667778888888888777777777777777777777788888888888777776                


Q ss_pred             CCCCCCccccchhhhhhhhhhcCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCcCCCCHHHHHHHcC-CHHHHHHHHHhC
Q psy12891        296 NIIPNGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNN-FPEVAQIFLRAH  374 (567)
Q Consensus       296 ~~~~~~~ll~~~~~~~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~-~~~~~~~Ll~~~  374 (567)
                             ++...+..++.....|.||||.|+..++.++++.++++|++++..+..|.|++|+|+..+ ..++...++..+
T Consensus       392 -------Lll~~ga~~~~~gk~gvTplh~aa~~~~~~~v~l~l~~gA~~~~~~~lG~T~lhvaa~~g~~~~~~~~l~~~g  464 (1143)
T KOG4177|consen  392 -------LLLEAGADPNSAGKNGVTPLHVAAHYGNPRVVKLLLKRGASPNAKAKLGYTPLHVAAKKGRYLQIARLLLQYG  464 (1143)
T ss_pred             -------hhhhccCCcccCCCCCcceeeehhhccCcceEEEEeccCCChhhHhhcCCChhhhhhhcccHhhhhhhHhhcC
Confidence                   888888889999999999999999999999999999999999999999999999999999 777887777776


Q ss_pred             CCCccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCccCcC
Q psy12891        375 PSLVTATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTG  454 (567)
Q Consensus       375 ~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g  454 (567)
                      .+ .+.....|.||||.|+..|+.+++..+++.+..   .......+.++||.|...+...+++.++++|++++.++..|
T Consensus       465 ~~-~n~~s~~G~T~Lhlaaq~Gh~~~~~llle~~~~---~~~~~~~~l~~lhla~~~~~v~~~~~l~~~ga~v~~~~~r~  540 (1143)
T KOG4177|consen  465 AD-PNAVSKQGFTPLHLAAQEGHTEVVQLLLEGGAN---DNLDAKKGLTPLHLAADEDTVKVAKILLEHGANVDLRTGRG  540 (1143)
T ss_pred             CC-cchhccccCcchhhhhccCCchHHHHhhhcCCc---cCccchhccchhhhhhhhhhHHHHHHHhhcCCceehhcccc
Confidence            66 788899999999999999999999999997633   33334478899999999999999999999999999999999


Q ss_pred             CcHHHHHHHcCcHHHHHHHHhcccccccccccCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcccccccCCCCCC
Q psy12891        455 FTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGM  534 (567)
Q Consensus       455 ~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~g~  534 (567)
                      .||||.|+.+|++++|++|+++|++.+.+++.|+||||.|+..|+.+++.+|++++++.             +..|.+|.
T Consensus       541 ~TpLh~A~~~g~v~~VkfLLe~gAdv~ak~~~G~TPLH~Aa~~G~~~i~~LLlk~GA~v-------------na~d~~g~  607 (1143)
T KOG4177|consen  541 YTPLHVAVHYGNVDLVKFLLEHGADVNAKDKLGYTPLHQAAQQGHNDIAELLLKHGASV-------------NAADLDGF  607 (1143)
T ss_pred             cchHHHHHhcCCchHHHHhhhCCccccccCCCCCChhhHHHHcChHHHHHHHHHcCCCC-------------CcccccCc
Confidence            99999999999999999999999999999999999999999999999999999998876             78899999


Q ss_pred             CHHHHHHHcCCHHHHHHHHhccCCcc
Q psy12891        535 TPLHLAAYSGNENVVRLLLNSAGVQV  560 (567)
Q Consensus       535 t~l~~A~~~~~~~~v~~Ll~~~g~~~  560 (567)
                      |||++|++.|+++++++|+.. |+++
T Consensus       608 TpL~iA~~lg~~~~~k~l~~~-~~~~  632 (1143)
T KOG4177|consen  608 TPLHIAVRLGYLSVVKLLKVV-TATP  632 (1143)
T ss_pred             chhHHHHHhcccchhhHHHhc-cCcc
Confidence            999999999999999999985 8885

>KOG4177|consensus

Probab=100.00  E-value=2.7e-58  Score=456.74  Aligned_cols=520  Identities=32%  Similarity=0.430  Sum_probs=430.5

Q ss_pred             CCCCChhhHHhhcCChhHHHHHHhhcCCCCChhh-------hHhhhcCchHHHHHHHhcCCCCCCCCCCCChHHHHHHHh
Q psy12891          8 KLRETPLHIAARVKDGDRCALMLLKSGAGPNLTN-------IAARVKDGDRCALMLLKSGAGPNLTTDDGQTPVHAAAKY   80 (567)
Q Consensus         8 ~~~~t~L~~A~~~g~~~~v~~~L~~~g~~~~~~~-------~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~   80 (567)
                      +.|-||||+|+-+|+.+ |..+|++.|+..+...       ..|...++.++++.|+..|+.++.++.+|.||||.|+..
T Consensus        52 k~~~~pl~~aa~~~~~~-v~~~ll~~~a~v~~~~~~~~~plh~a~~~~~a~~v~~ll~~ga~~~~~~~~~lTpLh~aa~~  130 (1143)
T KOG4177|consen   52 KSGFTPLHIAAHYGNEN-VAELLLNRGAIVNATARNGITPLHVASKRGDAEMVKLLLCRGAQIDARDRDGLTPLHCAARK  130 (1143)
T ss_pred             ccccCHHHHHhhhhhhh-hhhhhhccccccCcccccCccHHHHHHhhcchhHHHHHHhccCchhhcccCCCcchhhhccc
Confidence            38899999999999988 8888999999888665       578889999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHcCCCCCCCCCCCCChhHHHHhcCchhHHHHHHHhhhhhhh-----------------hHHhhhhccccc
Q psy12891         81 GNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVVDLLIQFVQNISQ-----------------EKVLEYVNSVNE  143 (567)
Q Consensus        81 g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~~~~~~~-----------------~~~~~~~~~~~~  143 (567)
                      |+.+++++|+..|++++.+|+.|.||+++|+.   ..-++++.++...---                 .....+.+..+.
T Consensus       131 g~~~~~~~ll~~~a~~~~k~~~g~t~l~~a~~---~~~~~ll~~~~~~d~l~~~~~~~~~~~~~~~ll~~~~~~~~a~~~  207 (1143)
T KOG4177|consen  131 GHVQVIELLLQHGAPINIKTKNGLSPLHMAAQ---VACARLLLEYKAPDYLRLHVAAHCGHARVAKLLLDKKADPNASAL  207 (1143)
T ss_pred             ccHHHHHHHHHccCCCcccccCCCCchhhhcc---hhhhHHhhhcccchhhhhhHHhhcchHHHHhhhhcccCCcccccc
Confidence            99999999999999999999999999988876   3333333332220000                 001122577788


Q ss_pred             ccccHHHHHHHhCCcccccccccccHHHHHHHHHcCCCccccccCCCccHHHHHHhcCCHHHHHHHHHhccCcchhhhhh
Q psy12891        144 DGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGADVSLQTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKALN  223 (567)
Q Consensus       144 ~~~t~L~~a~~~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~  223 (567)
                      .+.||+|.|+..+..           +++++++.+|+++...+.. +.+|+|.|+..|+.+++.+++.++...      +
T Consensus       208 ~~~tpl~~a~~~nri-----------~~~eLll~~gadv~a~d~~-gl~~lh~a~~~g~~~i~~~l~~~ga~~------~  269 (1143)
T KOG4177|consen  208 NGFTPLHIACKKNRI-----------KVVELLLKHGADVSAKDES-GLTPLHVAAFMGHLDIVKLLLQHGASV------N  269 (1143)
T ss_pred             CCCCchhhhcccccc-----------ceeeeeeeccCcCCccccc-CccHHHHHHhccchhHHHHHHhccccc------C
Confidence            899999999986554           4588899999999877665 489999999999999999999987765      5


Q ss_pred             cCCCCCChHHHHHHhcCcHHHHHHHHhCCCCCCccCCCCCCHHHHHHHcCCeeeeccccccccccc-----cCCCCCCCC
Q psy12891        224 KQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVSSGKSLKHSVMS-----FRLPPHNII  298 (567)
Q Consensus       224 ~~~~~~~~~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~  298 (567)
                      ..+..+.||+|.|+..+..++.++|+++|+++..+.....||++.+...+..++............     ...+.+...
T Consensus       270 ~~~vr~~tplh~AA~~~~~e~~~~ll~~ga~~~~~~~~~kt~l~~a~~~g~~~i~~~~l~~~~~~~aar~~g~t~lHlaa  349 (1143)
T KOG4177|consen  270 VSTVRGETPLHMAARAGQVEVCKLLLQNGADVLAKARDDQTPLHIASRLGHEEIVHLLLQAGATPNAARTAGYTPLHLAA  349 (1143)
T ss_pred             cccccccCcchhhhccchhhhHhhhhccCcccccccccccChhhhhcccchHHHHHHHhhccCCccccCcCCcccccHhh
Confidence            577788999999999999999999999999999988888999999888886665543221111110     001111100


Q ss_pred             CCC-----ccccchhhhhhhhhhcCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCcCCCCHHHHHHHcCCHHHHHHHHHh
Q psy12891        299 PNG-----FLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRA  373 (567)
Q Consensus       299 ~~~-----~ll~~~~~~~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~  373 (567)
                      ..+     ..+...+..-......+.+|++.|+..|..+.++++++.|++++.....|.||||.|..+++..+++.+++.
T Consensus       350 ~~~~~~~~~~l~~~~~~~~~a~~k~~~pl~la~~~g~~~~v~Lll~~ga~~~~~gk~gvTplh~aa~~~~~~~v~l~l~~  429 (1143)
T KOG4177|consen  350 KEGQVEVAGALLEHGAQRRQAEEKGFTPLHLAVKSGRVSVVELLLEAGADPNSAGKNGVTPLHVAAHYGNPRVVKLLLKR  429 (1143)
T ss_pred             hhhhHHHHHHhhccccccCcccccCCcchhhhcccCchhHHHhhhhccCCcccCCCCCcceeeehhhccCcceEEEEecc
Confidence            000     122223333444466788999999999999999999999999999999999999999999999999999998


Q ss_pred             CCCCccccCCCCCcHHHHHHHcC-CHHHHHHHHhcCCCcccccCCCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCccC
Q psy12891        374 HPSLVTATTKDGNTCAHIAAMQG-SVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENK  452 (567)
Q Consensus       374 ~~~~~~~~~~~~~~~l~~a~~~~-~~~~~~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~  452 (567)
                      ++. .+..+..|+|++|.|+..+ ..+....+++.+.+......   .|.||||.|...|+.++++.|++.++..+....
T Consensus       430 gA~-~~~~~~lG~T~lhvaa~~g~~~~~~~~l~~~g~~~n~~s~---~G~T~Lhlaaq~Gh~~~~~llle~~~~~~~~~~  505 (1143)
T KOG4177|consen  430 GAS-PNAKAKLGYTPLHVAAKKGRYLQIARLLLQYGADPNAVSK---QGFTPLHLAAQEGHTEVVQLLLEGGANDNLDAK  505 (1143)
T ss_pred             CCC-hhhHhhcCCChhhhhhhcccHhhhhhhHhhcCCCcchhcc---ccCcchhhhhccCCchHHHHhhhcCCccCccch
Confidence            887 6888889999999999999 78888888887776544443   789999999999999999999999999999999


Q ss_pred             cCCcHHHHHHHcCcHHHHHHHHhcccccccccccCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcccccccCCCC
Q psy12891        453 TGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSES  532 (567)
Q Consensus       453 ~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~  532 (567)
                      .|.|++|+|...+...+++.++++|++.+.++..|.||||+|+..|+.++|++|++++++.             +.+++.
T Consensus       506 ~~l~~lhla~~~~~v~~~~~l~~~ga~v~~~~~r~~TpLh~A~~~g~v~~VkfLLe~gAdv-------------~ak~~~  572 (1143)
T KOG4177|consen  506 KGLTPLHLAADEDTVKVAKILLEHGANVDLRTGRGYTPLHVAVHYGNVDLVKFLLEHGADV-------------NAKDKL  572 (1143)
T ss_pred             hccchhhhhhhhhhHHHHHHHhhcCCceehhcccccchHHHHHhcCCchHHHHhhhCCccc-------------cccCCC
Confidence            9999999999999999999999999999999999999999999999999999999998876             677899


Q ss_pred             CCCHHHHHHHcCCHHHHHHHHhccCCccccccccC
Q psy12891        533 GMTPLHLAAYSGNENVVRLLLNSAGVQVDAQTQEN  567 (567)
Q Consensus       533 g~t~l~~A~~~~~~~~v~~Ll~~~g~~~~~~~~~~  567 (567)
                      |+||||.|+..|+.+|+.+|+++ |++||+.+.+|
T Consensus       573 G~TPLH~Aa~~G~~~i~~LLlk~-GA~vna~d~~g  606 (1143)
T KOG4177|consen  573 GYTPLHQAAQQGHNDIAELLLKH-GASVNAADLDG  606 (1143)
T ss_pred             CCChhhHHHHcChHHHHHHHHHc-CCCCCcccccC
Confidence            99999999999999999999997 99999998765

>PHA02876 ankyrin repeat protein; Provisional

Probab=100.00  E-value=4.5e-55  Score=446.00  Aligned_cols=417  Identities=20%  Similarity=0.214  Sum_probs=219.3

Q ss_pred             hhHHhhcCChhHHHHHHhhcCCCCChhhhHhhhcCchHHHHHHHhcCCCCCCCCCCCChHHHHHHHhCCHHHHHHHHHcC
Q psy12891         14 LHIAARVKDGDRCALMLLKSGAGPNLTNIAARVKDGDRCALMLLKSGAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDG   93 (567)
Q Consensus        14 L~~A~~~g~~~~v~~~L~~~g~~~~~~~~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g   93 (567)
                      |+.|+..|+.+.+...+.+.                     .|+.+|++...++..+.||||.|+..|+.++|+.|++.+
T Consensus         6 l~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~t~LH~A~~~g~~e~V~~ll~~~   64 (682)
T PHA02876          6 LYRIMCRGNCIDILSAIDNY---------------------DLHKHGANQCENESIPFTAIHQALQLRQIDIVEEIIQQN   64 (682)
T ss_pred             HHHHHhcCchHHHHHHHHHH---------------------HHhhhhhhhcccccccchHHHHHHHHHhhhHHHHHHHhC
Confidence            67788888876544423211                     267788888888888999999999999999999999987


Q ss_pred             CC-CCCCCCCCCChhHHHHhc-----------------------------------------------------------
Q psy12891         94 GD-PMYKNKIGETPLHLASRN-----------------------------------------------------------  113 (567)
Q Consensus        94 a~-~~~~~~~g~t~L~~A~~~-----------------------------------------------------------  113 (567)
                      .+ ++..|..|.||||+|+..                                                           
T Consensus        65 ~~~~~~~~~~~~tpLh~a~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~  144 (682)
T PHA02876         65 PELIYITDHKCHSTLHTICIIPNVMDIVISLTLDCDIILDIKYASIILNKHKLDEACIHILKEAISGNDIHYDKINESIE  144 (682)
T ss_pred             cccchhhchhhccccccccCCCCccccccccccchhhcccccHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHhhccchh
Confidence            76 466778899999977743                                                           


Q ss_pred             -----------CchhHHHHHHHhhhhhhhhHHhhhhcccccccccHHHHHHHhCCcccccccccccHHHHHHHHHcCCCc
Q psy12891        114 -----------CKAEVVDLLIQFVQNISQEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGADV  182 (567)
Q Consensus       114 -----------~~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~~~v~~Ll~~g~~~  182 (567)
                                 ++.+++++|++.|++         ++.++..|.||||+|+.           .++.++|++|+++|+++
T Consensus       145 ~~~~l~~~i~~~~~~i~k~Ll~~Gad---------vn~~d~~G~TpLh~Aa~-----------~G~~~iv~~LL~~Gad~  204 (682)
T PHA02876        145 YMKLIKERIQQDELLIAEMLLEGGAD---------VNAKDIYCITPIHYAAE-----------RGNAKMVNLLLSYGADV  204 (682)
T ss_pred             hhHHHHHHHHCCcHHHHHHHHhCCCC---------CCCCCCCCCCHHHHHHH-----------CCCHHHHHHHHHCCCCc
Confidence                       334444444444444         34444445555555544           22333445555555444


Q ss_pred             cccccCCCccHHHHHHhcCCHHHHHHHHHhccCcchhhhhhcCCCCCChHHHHHHhcCcHHHHHHHHhCCCCCCccCCCC
Q psy12891        183 SLQTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEG  262 (567)
Q Consensus       183 ~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~  262 (567)
                      +..... +.+||++|+..++.+++++|++.++..          ..+.++++.|+..++.+++++|++.|++++..+..|
T Consensus       205 n~~~~~-g~t~L~~A~~~~~~~ivk~Ll~~~~~~----------~~~~~~L~~ai~~~~~~~~~~Ll~~g~~vn~~d~~g  273 (682)
T PHA02876        205 NIIALD-DLSVLECAVDSKNIDTIKAIIDNRSNI----------NKNDLSLLKAIRNEDLETSLLLYDAGFSVNSIDDCK  273 (682)
T ss_pred             CccCCC-CCCHHHHHHHcCCHHHHHHHHhcCCCC----------CCCcHHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCC
Confidence            433322 244555555555555555544433211          112244444555555555555555555555555555


Q ss_pred             CCHHHHHHHcCCee-eeccccccccccccCCCCCCCCCCCccccchhhhhhhhhhcCCCHHHHHHHcC-cHHHHHHHHHc
Q psy12891        263 RSALHLAAEHGYLK-VSSGKSLKHSVMSFRLPPHNIIPNGFLVHDHAAVIDILTLRKQTPLHLAAEAG-QLQVCKLLLDL  340 (567)
Q Consensus       263 ~t~l~~a~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~L~~a~~~~-~~~~v~~Ll~~  340 (567)
                      .||||+|+..+... +++                       ++...+.+++..+..|.||||+|+..| ..+++++|+..
T Consensus       274 ~TpLh~Aa~~~~~~~iv~-----------------------lLl~~gadin~~d~~g~TpLh~Aa~~g~~~~~v~~Ll~~  330 (682)
T PHA02876        274 NTPLHHASQAPSLSRLVP-----------------------KLLERGADVNAKNIKGETPLYLMAKNGYDTENIRTLIML  330 (682)
T ss_pred             CCHHHHHHhCCCHHHHHH-----------------------HHHHCCCCCCCcCCCCCCHHHHHHHhCCCHHHHHHHHHc
Confidence            55555555544432 222                       333444444444555555555555554 34555555555


Q ss_pred             CCCCCCcCcCCCCHHHHHHHc-CCHHHHHHHHHhCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccCCCC
Q psy12891        341 GASIDATDDQGQKPIHVAAQN-NFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRV  419 (567)
Q Consensus       341 g~~~~~~~~~g~t~L~~A~~~-~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~  419 (567)
                      |++++..+..|.||||+|+.. +..++++.|++.+.+ ++.++..|.||||+|+..++.+++++|++.+++...   .+.
T Consensus       331 gadin~~d~~g~TpLh~A~~~~~~~~iv~lLl~~gad-in~~d~~G~TpLh~Aa~~~~~~iv~~Ll~~gad~~~---~~~  406 (682)
T PHA02876        331 GADVNAADRLYITPLHQASTLDRNKDIVITLLELGAN-VNARDYCDKTPIHYAAVRNNVVIINTLLDYGADIEA---LSQ  406 (682)
T ss_pred             CCCCCCcccCCCcHHHHHHHhCCcHHHHHHHHHcCCC-CccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCccc---cCC
Confidence            555555555555555555543 234444444444443 344455555555555555555555555554443221   122


Q ss_pred             CCCCHHHHHHHcCc-HHHHHHHHHcCCCCCCccCcCCcHHHHHHHcC-cHHHHHHHHhcccccccccccCCcHHHHHHHc
Q psy12891        420 TEATPLQLAAEGGH-ANVVRVLVKAGASCTDENKTGFTAVHLAAQNG-HNQVLEEMRSSKALNVYSKKLGVTALHVAAYF  497 (567)
Q Consensus       420 ~~~t~L~~A~~~~~-~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~-~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~  497 (567)
                      .|.||||+|+..+. ..++++|+++|+++|.+|..|+||||+|+..+ +.+++++|++.|++++.+|..|.|||++|+..
T Consensus       407 ~g~T~Lh~A~~~~~~~~~vk~Ll~~gadin~~d~~G~TpLh~Aa~~~~~~~iv~lLl~~Gad~n~~d~~g~tpl~~a~~~  486 (682)
T PHA02876        407 KIGTALHFALCGTNPYMSVKTLIDRGANVNSKNKDLSTPLHYACKKNCKLDVIEMLLDNGADVNAINIQNQYPLLIALEY  486 (682)
T ss_pred             CCCchHHHHHHcCCHHHHHHHHHhCCCCCCcCCCCCChHHHHHHHhCCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHh
Confidence            34455555544332 23445555555555555555555555555443 34555555555555555555555555555543


Q ss_pred             CCHHHHHHHHhcCC
Q psy12891        498 GQADTVRELLSHVP  511 (567)
Q Consensus       498 ~~~~~~~~Ll~~~~  511 (567)
                      +  ++++.|+..++
T Consensus       487 ~--~~v~~Ll~~~a  498 (682)
T PHA02876        487 H--GIVNILLHYGA  498 (682)
T ss_pred             C--CHHHHHHHCCC
Confidence            3  24445544443

>PHA02876 ankyrin repeat protein; Provisional

Probab=100.00  E-value=1.2e-53  Score=435.62  Aligned_cols=454  Identities=21%  Similarity=0.225  Sum_probs=286.6

Q ss_pred             HHHHHHhCCH-HHHHH-----HHHcCCCCCCCCCCCCChhHHHHhcCchhHHHHHHHhhhhhhhhHHhhhhccccccccc
Q psy12891         74 VHAAAKYGNL-VTLQL-----LLEDGGDPMYKNKIGETPLHLASRNCKAEVVDLLIQFVQNISQEKVLEYVNSVNEDGAS  147 (567)
Q Consensus        74 L~~A~~~g~~-~~v~~-----Ll~~ga~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~t  147 (567)
                      |..++..|+. +++..     |+.+|++.+..+..+.||||.|+..||.|+|+.|++..+..        +...|..|.|
T Consensus         6 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~LH~A~~~g~~e~V~~ll~~~~~~--------~~~~~~~~~t   77 (682)
T PHA02876          6 LYRIMCRGNCIDILSAIDNYDLHKHGANQCENESIPFTAIHQALQLRQIDIVEEIIQQNPEL--------IYITDHKCHS   77 (682)
T ss_pred             HHHHHhcCchHHHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHhhhHHHHHHHhCccc--------chhhchhhcc
Confidence            5666777765 32322     44568888888889999999999999999999999987764        5677889999


Q ss_pred             HHHHHHHhCCccccccc--------------------ccccHHHHHHHHHc--CCCccccc---cCCCccHHHHHHhcCC
Q psy12891        148 ALHYACQVTKAELIPIT--------------------SKEDQKTVKLLLEA--GADVSLQT---KQNHETAFHYCAVAGN  202 (567)
Q Consensus       148 ~L~~a~~~~~~~~~~~~--------------------~~~~~~~v~~Ll~~--g~~~~~~~---~~~~~~~l~~a~~~~~  202 (567)
                      |||+|+..++..-....                    ......+++.|.+.  |.++....   .....++++.++..++
T Consensus        78 pLh~a~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~  157 (682)
T PHA02876         78 TLHTICIIPNVMDIVISLTLDCDIILDIKYASIILNKHKLDEACIHILKEAISGNDIHYDKINESIEYMKLIKERIQQDE  157 (682)
T ss_pred             ccccccCCCCccccccccccchhhcccccHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHhhccchhhhHHHHHHHHCCc
Confidence            99999976653210000                    00011112222221  22221110   1112456666777777


Q ss_pred             HHHHHHHHHhccCcchhhhhhcCCCCCChHHHHHHhcCcHHHHHHHHhCCCCCCccCCCCCCHHHHHHHcCCeeeecccc
Q psy12891        203 NDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVSSGKS  282 (567)
Q Consensus       203 ~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~  282 (567)
                      .+++++|++.+.+.      +.++..|.||||+|+..|+.++|++|+++|++++..+..|.|||++|+..++.++++...
T Consensus       158 ~~i~k~Ll~~Gadv------n~~d~~G~TpLh~Aa~~G~~~iv~~LL~~Gad~n~~~~~g~t~L~~A~~~~~~~ivk~Ll  231 (682)
T PHA02876        158 LLIAEMLLEGGADV------NAKDIYCITPIHYAAERGNAKMVNLLLSYGADVNIIALDDLSVLECAVDSKNIDTIKAII  231 (682)
T ss_pred             HHHHHHHHhCCCCC------CCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCccCCCCCCHHHHHHHcCCHHHHHHHH
Confidence            77777777765543      456666777777777777777777777777777777777777777777777666655321


Q ss_pred             ccccccccCC-CCC-----CCCCCCccccchhhhhhhhhhcCCCHHHHHHHcCcH-HHHHHHHHcCCCCCCcCcCCCCHH
Q psy12891        283 LKHSVMSFRL-PPH-----NIIPNGFLVHDHAAVIDILTLRKQTPLHLAAEAGQL-QVCKLLLDLGASIDATDDQGQKPI  355 (567)
Q Consensus       283 ~~~~~~~~~~-~~~-----~~~~~~~ll~~~~~~~~~~~~~~~t~L~~a~~~~~~-~~v~~Ll~~g~~~~~~~~~g~t~L  355 (567)
                      .......... +..     .......++.+.+.+++..+..|.||||+|+..++. +++++|++.|++++..+..|.|||
T Consensus       232 ~~~~~~~~~~~~L~~ai~~~~~~~~~~Ll~~g~~vn~~d~~g~TpLh~Aa~~~~~~~iv~lLl~~gadin~~d~~g~TpL  311 (682)
T PHA02876        232 DNRSNINKNDLSLLKAIRNEDLETSLLLYDAGFSVNSIDDCKNTPLHHASQAPSLSRLVPKLLERGADVNAKNIKGETPL  311 (682)
T ss_pred             hcCCCCCCCcHHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhCCCHHHHHHHHHHCCCCCCCcCCCCCCHH
Confidence            1110000000 000     000000144445555666666677777777777664 467777777777777777777777


Q ss_pred             HHHHHcC-CHHHHHHHHHhCCCCccccCCCCCcHHHHHHHc-CCHHHHHHHHhcCCCcccccCCCCCCCCHHHHHHHcCc
Q psy12891        356 HVAAQNN-FPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQ-GSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGH  433 (567)
Q Consensus       356 ~~A~~~~-~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~-~~~~~~~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~~~  433 (567)
                      |+|+..| ..++++.|+..+.+ .+..+..|.||||+|+.. +..++++.|++.+.+.   ...+..|.||||+|+..|+
T Consensus       312 h~Aa~~g~~~~~v~~Ll~~gad-in~~d~~g~TpLh~A~~~~~~~~iv~lLl~~gadi---n~~d~~G~TpLh~Aa~~~~  387 (682)
T PHA02876        312 YLMAKNGYDTENIRTLIMLGAD-VNAADRLYITPLHQASTLDRNKDIVITLLELGANV---NARDYCDKTPIHYAAVRNN  387 (682)
T ss_pred             HHHHHhCCCHHHHHHHHHcCCC-CCCcccCCCcHHHHHHHhCCcHHHHHHHHHcCCCC---ccCCCCCCCHHHHHHHcCC
Confidence            7777766 46777777766665 556666777777777664 3566667777665543   2334466777777777777


Q ss_pred             HHHHHHHHHcCCCCCCccCcCCcHHHHHHHcCc-HHHHHHHHhcccccccccccCCcHHHHHHHcC-CHHHHHHHHhcCC
Q psy12891        434 ANVVRVLVKAGASCTDENKTGFTAVHLAAQNGH-NQVLEEMRSSKALNVYSKKLGVTALHVAAYFG-QADTVRELLSHVP  511 (567)
Q Consensus       434 ~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~-~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~-~~~~~~~Ll~~~~  511 (567)
                      .+++++|+++|++++..+..|.||||+|+..++ ..++++|++.|++++.+|..|+||||+|+..+ +.+++++|+++++
T Consensus       388 ~~iv~~Ll~~gad~~~~~~~g~T~Lh~A~~~~~~~~~vk~Ll~~gadin~~d~~G~TpLh~Aa~~~~~~~iv~lLl~~Ga  467 (682)
T PHA02876        388 VVIINTLLDYGADIEALSQKIGTALHFALCGTNPYMSVKTLIDRGANVNSKNKDLSTPLHYACKKNCKLDVIEMLLDNGA  467 (682)
T ss_pred             HHHHHHHHHCCCCccccCCCCCchHHHHHHcCCHHHHHHHHHhCCCCCCcCCCCCChHHHHHHHhCCcHHHHHHHHHCCC
Confidence            777777777777777777777777777766544 34567777777777777777777777777655 5677777777765


Q ss_pred             CCCCCCCCCCcccccccCCCCCCCHHHHHHHcCCHHHHHHHHhccCCccc
Q psy12891        512 GTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVRLLLNSAGVQVD  561 (567)
Q Consensus       512 ~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~g~~~~  561 (567)
                      +.             +..|..|.|||++|+..+  .++++|++. |+++.
T Consensus       468 d~-------------n~~d~~g~tpl~~a~~~~--~~v~~Ll~~-~a~~~  501 (682)
T PHA02876        468 DV-------------NAINIQNQYPLLIALEYH--GIVNILLHY-GAELR  501 (682)
T ss_pred             CC-------------CCCCCCCCCHHHHHHHhC--CHHHHHHHC-CCCCC
Confidence            54             455677777777777654  467777663 66654

>PHA02917 ankyrin-like protein; Provisional

Probab=100.00  E-value=3.6e-52  Score=410.84  Aligned_cols=428  Identities=18%  Similarity=0.157  Sum_probs=315.8

Q ss_pred             HHHHHHHhcCCCCCCCCCCCChHHHHHHHh---CCHHHHHHHHHcCCCCCCCCCCCCChhHHHHhcCchh----HHHHHH
Q psy12891         51 RCALMLLKSGAGPNLTTDDGQTPVHAAAKY---GNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAE----VVDLLI  123 (567)
Q Consensus        51 ~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~---g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~~~~~----iv~~Ll  123 (567)
                      +.++.|+.+|..++.+|.+|+||||+|+..   |+.++|++|++.|++++.++..|+||||+|+..|+.+    +++.|+
T Consensus        13 ~~~~~l~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~~~v~~Ll~~ga~v~~~~~~g~TpL~~Aa~~g~~~v~~~~~~~Ll   92 (661)
T PHA02917         13 DELKQMLRDRDPNDTRNQFKNNALHAYLFNEHCNNVEVVKLLLDSGTNPLHKNWRQLTPLEEYTNSRHVKVNKDIAMALL   92 (661)
T ss_pred             HHHHHHHhccCcccccCCCCCcHHHHHHHhhhcCcHHHHHHHHHCCCCccccCCCCCCHHHHHHHcCChhHHHHHHHHHH
Confidence            567788889999999999999999998665   8899999999999999999999999999999999855    556777


Q ss_pred             HhhhhhhhhHHhhhhcccccccccHHHHHHHhCCcccccccccccHHHHHHHHHcCCCccccccCCCccHHHHH--HhcC
Q psy12891        124 QFVQNISQEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGADVSLQTKQNHETAFHYC--AVAG  201 (567)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~l~~a--~~~~  201 (567)
                      +.+..         .+..+  ..+++++|+.           .++.++|++|+++|++++..+.. |.|||+.+  +.+|
T Consensus        93 ~~~~~---------~n~~~--~~~~~~~a~~-----------~~~~e~vk~Ll~~Gadin~~d~~-g~T~L~~~~a~~~~  149 (661)
T PHA02917         93 EATGY---------SNIND--FNIFSYMKSK-----------NVDVDLIKVLVEHGFDLSVKCEN-HRSVIENYVMTDDP  149 (661)
T ss_pred             hccCC---------CCCCC--cchHHHHHhh-----------cCCHHHHHHHHHcCCCCCccCCC-CccHHHHHHHccCC
Confidence            65332         12212  2356677776           55678899999999999977655 59999965  4578


Q ss_pred             CHHHHHHHHHhccCcchhhh--------hhcCCCCCChHHHHHHh-----------cCcHHHHHHHHhCCCCCCccCCCC
Q psy12891        202 NNDVLTGMLEQMSGTEISKA--------LNKQTSIGWTPLLIACN-----------RGHMELVNTMLNNHARVDVFDQEG  262 (567)
Q Consensus       202 ~~~~~~~Ll~~~~~~~~~~~--------~~~~~~~~~~~L~~A~~-----------~~~~~~v~~Ll~~g~~~~~~~~~~  262 (567)
                      +.+++++|++++++......        .......+.||||+|+.           .++.+++++|+++|++++..+..|
T Consensus       150 ~~eivklLi~~Ga~vn~~d~~~~~g~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~eiv~~Li~~Gadvn~~d~~G  229 (661)
T PHA02917        150 VPEIIDLFIENGCSVLYEDEDDEYGYAYDDYQPRNCGTVLHLYIISHLYSESDTRAYVRPEVVKCLINHGIKPSSIDKNY  229 (661)
T ss_pred             CHHHHHHHHHcCCCccccccccccccccccccccccccHHHHHHhhcccccccccccCcHHHHHHHHHCCCCcccCCCCC
Confidence            99999999999887642110        01122344699999986           468999999999999999999999


Q ss_pred             CCHHHHHHHcCCe--eeeccccccccccccCCCCCCCCCCCccccchhhhhh----hhhhcCCCHHHHHHHc--------
Q psy12891        263 RSALHLAAEHGYL--KVSSGKSLKHSVMSFRLPPHNIIPNGFLVHDHAAVID----ILTLRKQTPLHLAAEA--------  328 (567)
Q Consensus       263 ~t~l~~a~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~----~~~~~~~t~L~~a~~~--------  328 (567)
                      .||||+|+.+|+.  ++++                       ++.. +.+.+    ..+..+.+|++.|+.-        
T Consensus       230 ~TpLh~A~~~g~~~~eivk-----------------------~Li~-g~d~~~~~~~~~~~~~~~~~~a~yl~~~~~~~~  285 (661)
T PHA02917        230 CTALQYYIKSSHIDIDIVK-----------------------LLMK-GIDNTAYSYIDDLTCCTRGIMADYLNSDYRYNK  285 (661)
T ss_pred             CcHHHHHHHcCCCcHHHHH-----------------------HHHh-CCcccccccccCcccccchHHHHHHHhhccccc
Confidence            9999999999986  4776                       3333 44443    3455677888888831        


Q ss_pred             -CcHHHHHHHHHcCCCCCCcCcCCCCHHHHHHHcCCHHHHHHHHHhCCCCccccCCCCCcHHHH---HHHcCC--HHHHH
Q psy12891        329 -GQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHI---AAMQGS--VGVIE  402 (567)
Q Consensus       329 -~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~---a~~~~~--~~~~~  402 (567)
                       .+.+++++|++.|++.      +.++++++...+..++++++++...         +.+++|.   ++..|.  .++++
T Consensus       286 ~v~~~iv~~Li~~Ga~~------~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~l~~~~~~g~~~~~~v~  350 (661)
T PHA02917        286 DVDLDLVKLFLENGKPH------GIMCSIVPLWRNDKETISLILKTMN---------SDVLQHILIEYMTFGDIDIPLVE  350 (661)
T ss_pred             cchHHHHHHHHhCCCCC------ceeEeeecccccchHHHHHHHHHhc---------hHHHHHHHHHHHHcCCCcHHHHH
Confidence             1789999999999863      4566777777777788877775321         1124333   333554  45788


Q ss_pred             HHHhcCCCcccccCCCCCCCCHHHHHHHcCcHHHHHHHHH-cCCCCCCccCcCCcHHHHHHHcC----------------
Q psy12891        403 ELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVK-AGASCTDENKTGFTAVHLAAQNG----------------  465 (567)
Q Consensus       403 ~ll~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~~~g~t~l~~A~~~~----------------  465 (567)
                      +|++.|++..   .++..|.++.    .....+++++|+. .|++++..+..|+||||.|++.+                
T Consensus       351 ~Ll~~GAdvn---~~~~~g~~~~----~~~~~~~i~~LL~~~ga~~~~~~~~G~TpL~~a~~~~~~~~~~~~~~~~~~~~  423 (661)
T PHA02917        351 CMLEYGAVVN---KEAIHGYFRN----INIDSYTMKYLLKKEGGDAVNHLDDGEIPIGHLCKSNYGCYNFYTYTYKKGLC  423 (661)
T ss_pred             HHHHcCCCCC---CCCccccchh----hcCCHHHHHHHHHhcCCCccccCCCCCChhHHHHHhcccchhhhhhhhhhccc
Confidence            8888777644   2334555533    3455667777775 57776666667888888776432                


Q ss_pred             -------cHHHHHHHHhcccccccccccCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcccccccCCCCCCCHHH
Q psy12891        466 -------HNQVLEEMRSSKALNVYSKKLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLH  538 (567)
Q Consensus       466 -------~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~  538 (567)
                             ..+++++|+++|++++.+|..|+||||+|+..++.+++++|++++.+.             +..|..|.|||+
T Consensus       424 ~~~~~~~~~~~v~~Ll~~GAdIN~kd~~G~TpLh~Aa~~~~~~~v~~Ll~~GAdi-------------n~~d~~G~T~L~  490 (661)
T PHA02917        424 DMSYACPILSTINICLPYLKDINMIDKRGETLLHKAVRYNKQSLVSLLLESGSDV-------------NIRSNNGYTCIA  490 (661)
T ss_pred             hhhhhhhhHHHHHHHHHCCCCCCCCCCCCcCHHHHHHHcCCHHHHHHHHHCcCCC-------------CCCCCCCCCHHH
Confidence                   245678888888888888888888888888888888888888877655             456677888888


Q ss_pred             HHHH-cCCHHHHHHHHhccCCccc
Q psy12891        539 LAAY-SGNENVVRLLLNSAGVQVD  561 (567)
Q Consensus       539 ~A~~-~~~~~~v~~Ll~~~g~~~~  561 (567)
                      +|+. .++.+++++|+.+ |++++
T Consensus       491 ~A~~~~~~~~iv~~LL~~-ga~i~  513 (661)
T PHA02917        491 IAINESRNIELLKMLLCH-KPTLD  513 (661)
T ss_pred             HHHHhCCCHHHHHHHHHc-CCChh
Confidence            8875 6778888888875 77775

>PHA02946 ankyin-like protein; Provisional

Probab=100.00  E-value=3e-51  Score=390.29  Aligned_cols=357  Identities=15%  Similarity=0.178  Sum_probs=219.9

Q ss_pred             hcCchHHHHHHHhcCCCCCCCCCCCChHHHHHHH--hCCHHHHHHHHHcCCCCCCCCCCCCChhHHHHhcCchhHHHHHH
Q psy12891         46 VKDGDRCALMLLKSGAGPNLTTDDGQTPVHAAAK--YGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVVDLLI  123 (567)
Q Consensus        46 ~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~--~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll  123 (567)
                      ..++.+.++.+++...     ...+.++||.++.  .++.++|++|+++|++++.+|..|.||||+|+..|+.++|++|+
T Consensus        18 ~~~n~~~~~~~l~~~~-----~~g~~~~Lh~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~G~TpLh~Aa~~g~~eiv~lLL   92 (446)
T PHA02946         18 NSKNLDVFRNMLQAIE-----PSGNYHILHAYCGIKGLDERFVEELLHRGYSPNETDDDGNYPLHIASKINNNRIVAMLL   92 (446)
T ss_pred             ccCcHHHHHHHHhccC-----CCCCChHHHHHHHhcCCCHHHHHHHHHCcCCCCccCCCCCCHHHHHHHcCCHHHHHHHH
Confidence            3344455555554321     1123577776653  33567777777777777777777777777777777777777777


Q ss_pred             HhhhhhhhhHHhhhhcccccccccHHHHHHHhCCcccccccccccHHHHHHHHHcCCCccccccCCCccHHHHHHhcCCH
Q psy12891        124 QFVQNISQEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGADVSLQTKQNHETAFHYCAVAGNN  203 (567)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~l~~a~~~~~~  203 (567)
                      ++|++         ++.+|..|.||||+|+..+         ....+++++|+++|++++...+..|.|||+ |+..++.
T Consensus        93 ~~GAd---------in~~d~~g~TpLh~A~~~~---------~~~~e~v~lLl~~Gadin~~~d~~g~tpL~-aa~~~~~  153 (446)
T PHA02946         93 THGAD---------PNACDKQHKTPLYYLSGTD---------DEVIERINLLVQYGAKINNSVDEEGCGPLL-ACTDPSE  153 (446)
T ss_pred             HCcCC---------CCCCCCCCCCHHHHHHHcC---------CchHHHHHHHHHcCCCcccccCCCCCcHHH-HHHCCCh
Confidence            77776         5667777777777776533         224567778888888777655556677776 5556777


Q ss_pred             HHHHHHHHhccCcchhhhhhcCCCCCChHHHHHHhcC--cHHHHHHHHhCCCCCCccCCCCCCHHHHHHHcCCeeeeccc
Q psy12891        204 DVLTGMLEQMSGTEISKALNKQTSIGWTPLLIACNRG--HMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVSSGK  281 (567)
Q Consensus       204 ~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~L~~A~~~~--~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~~  281 (567)
                      +++++|++.+.+.      +.++..|.||||.|+..+  +.+++++|+++|++++.+|..|.||||+|+..+.       
T Consensus       154 ~vv~~Ll~~gad~------~~~d~~G~t~Lh~A~~~~~~~~~~v~~Ll~~Gadin~~d~~G~TpLH~Aa~~~~-------  220 (446)
T PHA02946        154 RVFKKIMSIGFEA------RIVDKFGKNHIHRHLMSDNPKASTISWMMKLGISPSKPDHDGNTPLHIVCSKTV-------  220 (446)
T ss_pred             HHHHHHHhccccc------cccCCCCCCHHHHHHHhcCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCC-------
Confidence            8888888775443      556777888888877654  4578888888888888888877777777776541       


Q ss_pred             cccccccccCCCCCCCCCCCccccchhhhhhhhhhcCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCcCCCCHHHHHHHc
Q psy12891        282 SLKHSVMSFRLPPHNIIPNGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQN  361 (567)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~  361 (567)
                                                                     ++.+++++|++ |++++.+|..|.||||+|+..
T Consensus       221 -----------------------------------------------~~~~iv~lLl~-gadin~~d~~G~TpLh~A~~~  252 (446)
T PHA02946        221 -----------------------------------------------KNVDIINLLLP-STDVNKQNKFGDSPLTLLIKT  252 (446)
T ss_pred             -----------------------------------------------CcHHHHHHHHc-CCCCCCCCCCCCCHHHHHHHh
Confidence                                                           23455555553 555555555555555555555


Q ss_pred             CC-HHHHHHHHHhCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCCCCHHHHHHHcCcHHHHHHH
Q psy12891        362 NF-PEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVL  440 (567)
Q Consensus       362 ~~-~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~L  440 (567)
                      ++ .+++++|++.+...      .++ +++.++..+..++++.+.+.+..         .|.||||+|++.|+.+++++|
T Consensus       253 ~~~~~~~~~Ll~~g~~~------~~~-~~~~a~~~~~~~~~e~l~~~g~~---------~~~TpLh~Aa~~g~~eivk~L  316 (446)
T PHA02946        253 LSPAHLINKLLSTSNVI------TDQ-TVNICIFYDRDDVLEIINDKGKQ---------YDSTDFKMAVEVGSIRCVKYL  316 (446)
T ss_pred             CChHHHHHHHHhCCCCC------CCc-HHHHHHHcCchHHHHHHHHcCcc---------cCCCHHHHHHHcCCHHHHHHH
Confidence            44 34555555544321      112 24555555555555555544321         244555555555555555555


Q ss_pred             HHcCCCCCCccCcCCcHHHHHHHcCcHHHHHHHHhcccccccccccCCcHHHHHHHcCCHHHHHHHHhcCC
Q psy12891        441 VKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLGVTALHVAAYFGQADTVRELLSHVP  511 (567)
Q Consensus       441 l~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~  511 (567)
                      +++|+       .|+||||+|+..++.+++++|+.+|++++.. ..|.||||+|+..++.++++.|+.+.|
T Consensus       317 l~~~~-------~~~t~L~~A~~~~~~~~v~~Ll~~ga~~n~~-~~G~t~l~~a~~~~~~~~~~~ll~~~~  379 (446)
T PHA02946        317 LDNDI-------ICEDAMYYAVLSEYETMVDYLLFNHFSVDSV-VNGHTCMSECVRLNNPVILSKLMLHNP  379 (446)
T ss_pred             HHCCC-------ccccHHHHHHHhCHHHHHHHHHHCCCCCCCc-cccccHHHHHHHcCCHHHHHHHHhcCc
Confidence            55543       2455555555555555555555555555543 345555555555555555555555433

>PHA02917 ankyrin-like protein; Provisional

Probab=100.00  E-value=2e-50  Score=398.48  Aligned_cols=429  Identities=14%  Similarity=0.113  Sum_probs=311.3

Q ss_pred             cCCCCCChhhHHhhc---CChhHHHHHHhhcCCCCChhhhHhhhcCchHHHHHHHhcCCCCCCCCCCCChHHHHHHHhCC
Q psy12891          6 SGKLRETPLHIAARV---KDGDRCALMLLKSGAGPNLTNIAARVKDGDRCALMLLKSGAGPNLTTDDGQTPVHAAAKYGN   82 (567)
Q Consensus         6 ~~~~~~t~L~~A~~~---g~~~~v~~~L~~~g~~~~~~~~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~   82 (567)
                      ++..|+||||+||..   |+.+                           ++++|+++|++++.++..|+||||+|+..|+
T Consensus        28 ~d~~g~t~Lh~a~~~~~~~~~~---------------------------~v~~Ll~~ga~v~~~~~~g~TpL~~Aa~~g~   80 (661)
T PHA02917         28 RNQFKNNALHAYLFNEHCNNVE---------------------------VVKLLLDSGTNPLHKNWRQLTPLEEYTNSRH   80 (661)
T ss_pred             cCCCCCcHHHHHHHhhhcCcHH---------------------------HHHHHHHCCCCccccCCCCCCHHHHHHHcCC
Confidence            478899999998665   5555                           4556889999999999999999999999998


Q ss_pred             HH----HHHHHHHcCCCCCCCCCCCCChhHHHHhcCchhHHHHHHHhhhhhhhhHHhhhhcccccccccHHHHHHHhCCc
Q psy12891         83 LV----TLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVVDLLIQFVQNISQEKVLEYVNSVNEDGASALHYACQVTKA  158 (567)
Q Consensus        83 ~~----~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~  158 (567)
                      .+    +++.|++.+...+..+.  .+++++|+..++.++|++|+++|++         ++.++..|.|||+.++..+  
T Consensus        81 ~~v~~~~~~~Ll~~~~~~n~~~~--~~~~~~a~~~~~~e~vk~Ll~~Gad---------in~~d~~g~T~L~~~~a~~--  147 (661)
T PHA02917         81 VKVNKDIAMALLEATGYSNINDF--NIFSYMKSKNVDVDLIKVLVEHGFD---------LSVKCENHRSVIENYVMTD--  147 (661)
T ss_pred             hhHHHHHHHHHHhccCCCCCCCc--chHHHHHhhcCCHHHHHHHHHcCCC---------CCccCCCCccHHHHHHHcc--
Confidence            54    56788887554555443  3678889999999999999999999         7888999999999765422  


Q ss_pred             ccccccccccHHHHHHHHHcCCCcccccc--C-----------CCccHHHHHHh-----------cCCHHHHHHHHHhcc
Q psy12891        159 ELIPITSKEDQKTVKLLLEAGADVSLQTK--Q-----------NHETAFHYCAV-----------AGNNDVLTGMLEQMS  214 (567)
Q Consensus       159 ~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~--~-----------~~~~~l~~a~~-----------~~~~~~~~~Ll~~~~  214 (567)
                             .++.+++++|+++|++++..+.  .           .+.||||+|+.           .++.+++++|++.++
T Consensus       148 -------~~~~eivklLi~~Ga~vn~~d~~~~~g~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~eiv~~Li~~Ga  220 (661)
T PHA02917        148 -------DPVPEIIDLFIENGCSVLYEDEDDEYGYAYDDYQPRNCGTVLHLYIISHLYSESDTRAYVRPEVVKCLINHGI  220 (661)
T ss_pred             -------CCCHHHHHHHHHcCCCccccccccccccccccccccccccHHHHHHhhcccccccccccCcHHHHHHHHHCCC
Confidence                   5678899999999999985432  1           12599999986           468999999999987


Q ss_pred             CcchhhhhhcCCCCCChHHHHHHhcCcH--HHHHHHHhCCCCCC----ccCCCCCCHHHHHHHcC---------Ceeeec
Q psy12891        215 GTEISKALNKQTSIGWTPLLIACNRGHM--ELVNTMLNNHARVD----VFDQEGRSALHLAAEHG---------YLKVSS  279 (567)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~L~~A~~~~~~--~~v~~Ll~~g~~~~----~~~~~~~t~l~~a~~~~---------~~~~~~  279 (567)
                      +.      +.++..|.||||+|+..|+.  ++|++|++ |++++    ..+..+.+|+++++.-+         ..++++
T Consensus       221 dv------n~~d~~G~TpLh~A~~~g~~~~eivk~Li~-g~d~~~~~~~~~~~~~~~~~~a~yl~~~~~~~~~v~~~iv~  293 (661)
T PHA02917        221 KP------SSIDKNYCTALQYYIKSSHIDIDIVKLLMK-GIDNTAYSYIDDLTCCTRGIMADYLNSDYRYNKDVDLDLVK  293 (661)
T ss_pred             Cc------ccCCCCCCcHHHHHHHcCCCcHHHHHHHHh-CCcccccccccCcccccchHHHHHHHhhccccccchHHHHH
Confidence            64      77889999999999999985  79999985 87765    45667888888888432         223332


Q ss_pred             cccccccccccCCCCCCCCCCCccccchhhhhh--hhhhcCCCHHHH---HHHcCc--HHHHHHHHHcCCCCCCcCcCCC
Q psy12891        280 GKSLKHSVMSFRLPPHNIIPNGFLVHDHAAVID--ILTLRKQTPLHL---AAEAGQ--LQVCKLLLDLGASIDATDDQGQ  352 (567)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~--~~~~~~~t~L~~---a~~~~~--~~~v~~Ll~~g~~~~~~~~~g~  352 (567)
                      ........    .+........ .. .....+.  .....+.++++.   ++..|.  .+++++|++.||+++.++..|.
T Consensus       294 ~Li~~Ga~----~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~v~~Ll~~GAdvn~~~~~g~  367 (661)
T PHA02917        294 LFLENGKP----HGIMCSIVPL-WR-NDKETISLILKTMNSDVLQHILIEYMTFGDIDIPLVECMLEYGAVVNKEAIHGY  367 (661)
T ss_pred             HHHhCCCC----CceeEeeecc-cc-cchHHHHHHHHHhchHHHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCCCCcccc
Confidence            11110000    0000000000 00 0000000  001123334443   334665  5589999999999998888888


Q ss_pred             CHHHHHHHcCCHHHHHHHHHh-CCCCccccCCCCCcHHHHHHHcCCH--HHHHHHHhcCCCcccccCCCCCCCCHHHHHH
Q psy12891        353 KPIHVAAQNNFPEVAQIFLRA-HPSLVTATTKDGNTCAHIAAMQGSV--GVIEELMKFDRSGVISARNRVTEATPLQLAA  429 (567)
Q Consensus       353 t~L~~A~~~~~~~~~~~Ll~~-~~~~~~~~~~~~~~~l~~a~~~~~~--~~~~~ll~~~~~~~~~~~~~~~~~t~L~~A~  429 (567)
                      ++.    .....+++++|+.. ++.. ...+.+|+||||.|++.+..  +...+...             .|.+..  +.
T Consensus       368 ~~~----~~~~~~~i~~LL~~~ga~~-~~~~~~G~TpL~~a~~~~~~~~~~~~~~~~-------------~~~~~~--~~  427 (661)
T PHA02917        368 FRN----INIDSYTMKYLLKKEGGDA-VNHLDDGEIPIGHLCKSNYGCYNFYTYTYK-------------KGLCDM--SY  427 (661)
T ss_pred             chh----hcCCHHHHHHHHHhcCCCc-cccCCCCCChhHHHHHhcccchhhhhhhhh-------------hccchh--hh
Confidence            754    35677788888874 5443 34455699999988766543  32222111             122222  22


Q ss_pred             HcCcHHHHHHHHHcCCCCCCccCcCCcHHHHHHHcCcHHHHHHHHhcccccccccccCCcHHHHHHH-cCCHHHHHHHHh
Q psy12891        430 EGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLGVTALHVAAY-FGQADTVRELLS  508 (567)
Q Consensus       430 ~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~-~~~~~~~~~Ll~  508 (567)
                      ..+..+++++|+++|+++|.+|..|+||||+|+..++.+++++|+++|++++.+|..|+||||+|+. .++.+++++|++
T Consensus       428 ~~~~~~~v~~Ll~~GAdIN~kd~~G~TpLh~Aa~~~~~~~v~~Ll~~GAdin~~d~~G~T~L~~A~~~~~~~~iv~~LL~  507 (661)
T PHA02917        428 ACPILSTINICLPYLKDINMIDKRGETLLHKAVRYNKQSLVSLLLESGSDVNIRSNNGYTCIAIAINESRNIELLKMLLC  507 (661)
T ss_pred             hhhhHHHHHHHHHCCCCCCCCCCCCcCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHhCCCHHHHHHHHH
Confidence            2336889999999999999999999999999999999999999999999999999999999999996 689999999999


Q ss_pred             cCCCCC
Q psy12891        509 HVPGTV  514 (567)
Q Consensus       509 ~~~~~~  514 (567)
                      ++++..
T Consensus       508 ~ga~i~  513 (661)
T PHA02917        508 HKPTLD  513 (661)
T ss_pred             cCCChh
Confidence            988653

>PHA02946 ankyin-like protein; Provisional

Probab=100.00  E-value=1.4e-49  Score=378.97  Aligned_cols=358  Identities=22%  Similarity=0.271  Sum_probs=298.0

Q ss_pred             ChhhHHhhcCChhHHHHHHhhcCCCCC--hhh-hHhhhcCchHHHHHHHhcCCCCCCCCCCCChHHHHHHHhCCHHHHHH
Q psy12891         12 TPLHIAARVKDGDRCALMLLKSGAGPN--LTN-IAARVKDGDRCALMLLKSGAGPNLTTDDGQTPVHAAAKYGNLVTLQL   88 (567)
Q Consensus        12 t~L~~A~~~g~~~~v~~~L~~~g~~~~--~~~-~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~   88 (567)
                      -+|..+...++.+.+..+|......-+  ..+ ..+......+++++|+++|+++|.++.+|+||||+|+..|+.++|++
T Consensus        11 ~sl~~~~~~~n~~~~~~~l~~~~~~g~~~~Lh~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~G~TpLh~Aa~~g~~eiv~l   90 (446)
T PHA02946         11 LSLYAKYNSKNLDVFRNMLQAIEPSGNYHILHAYCGIKGLDERFVEELLHRGYSPNETDDDGNYPLHIASKINNNRIVAM   90 (446)
T ss_pred             HHHHHHHccCcHHHHHHHHhccCCCCCChHHHHHHHhcCCCHHHHHHHHHCcCCCCccCCCCCCHHHHHHHcCCHHHHHH
Confidence            457788888898865554433221111  112 22334456789999999999999999999999999999999999999


Q ss_pred             HHHcCCCCCCCCCCCCChhHHHHhcC--chhHHHHHHHhhhhhhhhHHhhhhc-ccccccccHHHHHHHhCCcccccccc
Q psy12891         89 LLEDGGDPMYKNKIGETPLHLASRNC--KAEVVDLLIQFVQNISQEKVLEYVN-SVNEDGASALHYACQVTKAELIPITS  165 (567)
Q Consensus        89 Ll~~ga~~~~~~~~g~t~L~~A~~~~--~~~iv~~Ll~~~~~~~~~~~~~~~~-~~~~~~~t~L~~a~~~~~~~~~~~~~  165 (567)
                      |+++|++++.+|..|.||||+|+..+  ..+++++|+++|++         ++ ..+..|.|||+.| .           
T Consensus        91 LL~~GAdin~~d~~g~TpLh~A~~~~~~~~e~v~lLl~~Gad---------in~~~d~~g~tpL~aa-~-----------  149 (446)
T PHA02946         91 LLTHGADPNACDKQHKTPLYYLSGTDDEVIERINLLVQYGAK---------INNSVDEEGCGPLLAC-T-----------  149 (446)
T ss_pred             HHHCcCCCCCCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCC---------cccccCCCCCcHHHHH-H-----------
Confidence            99999999999999999999998866  47999999999988         45 4688999999844 3           


Q ss_pred             cccHHHHHHHHHcCCCccccccCCCccHHHHHHhcCC--HHHHHHHHHhccCcchhhhhhcCCCCCChHHHHHHhcC--c
Q psy12891        166 KEDQKTVKLLLEAGADVSLQTKQNHETAFHYCAVAGN--NDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIACNRG--H  241 (567)
Q Consensus       166 ~~~~~~v~~Ll~~g~~~~~~~~~~~~~~l~~a~~~~~--~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~L~~A~~~~--~  241 (567)
                      .++.+++++|++.|++++..+.. |.||||+|+..++  .+++++|++.+.+.      +.++..|.||||+|+..+  +
T Consensus       150 ~~~~~vv~~Ll~~gad~~~~d~~-G~t~Lh~A~~~~~~~~~~v~~Ll~~Gadi------n~~d~~G~TpLH~Aa~~~~~~  222 (446)
T PHA02946        150 DPSERVFKKIMSIGFEARIVDKF-GKNHIHRHLMSDNPKASTISWMMKLGISP------SKPDHDGNTPLHIVCSKTVKN  222 (446)
T ss_pred             CCChHHHHHHHhccccccccCCC-CCCHHHHHHHhcCCCHHHHHHHHHcCCCC------cccCCCCCCHHHHHHHcCCCc
Confidence            45677899999999999877665 5999999987655  68999999997654      678899999999999986  8


Q ss_pred             HHHHHHHHhCCCCCCccCCCCCCHHHHHHHcCCeeeeccccccccccccCCCCCCCCCCCccccchhhhhhhhhhcCCCH
Q psy12891        242 MELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVSSGKSLKHSVMSFRLPPHNIIPNGFLVHDHAAVIDILTLRKQTP  321 (567)
Q Consensus       242 ~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~  321 (567)
                      .+++++|++ |++++.++..|.||||+|+.                                                  
T Consensus       223 ~~iv~lLl~-gadin~~d~~G~TpLh~A~~--------------------------------------------------  251 (446)
T PHA02946        223 VDIINLLLP-STDVNKQNKFGDSPLTLLIK--------------------------------------------------  251 (446)
T ss_pred             HHHHHHHHc-CCCCCCCCCCCCCHHHHHHH--------------------------------------------------
Confidence            899999985 89998888777766666554                                                  


Q ss_pred             HHHHHHcCc-HHHHHHHHHcCCCCCCcCcCCCCHHHHHHHcCCHHHHHHHHHhCCCCccccCCCCCcHHHHHHHcCCHHH
Q psy12891        322 LHLAAEAGQ-LQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGV  400 (567)
Q Consensus       322 L~~a~~~~~-~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~  400 (567)
                            .++ .+++++|+++|++++     ++ +++.|+..+..++++.+.+.+..       .|.||||+|+..|+.++
T Consensus       252 ------~~~~~~~~~~Ll~~g~~~~-----~~-~~~~a~~~~~~~~~e~l~~~g~~-------~~~TpLh~Aa~~g~~ei  312 (446)
T PHA02946        252 ------TLSPAHLINKLLSTSNVIT-----DQ-TVNICIFYDRDDVLEIINDKGKQ-------YDSTDFKMAVEVGSIRC  312 (446)
T ss_pred             ------hCChHHHHHHHHhCCCCCC-----Cc-HHHHHHHcCchHHHHHHHHcCcc-------cCCCHHHHHHHcCCHHH
Confidence                  444 478899999997764     22 48899999999999999887642       57899999999999999


Q ss_pred             HHHHHhcCCCcccccCCCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCccCcCCcHHHHHHHcCcHHHHHHHHhccc
Q psy12891        401 IEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKA  478 (567)
Q Consensus       401 ~~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~  478 (567)
                      +++|++++.          .+.||||+|+..++.+++++|+.+|+++|.. ..|.||||+|+..++.++++.|+.+..
T Consensus       313 vk~Ll~~~~----------~~~t~L~~A~~~~~~~~v~~Ll~~ga~~n~~-~~G~t~l~~a~~~~~~~~~~~ll~~~~  379 (446)
T PHA02946        313 VKYLLDNDI----------ICEDAMYYAVLSEYETMVDYLLFNHFSVDSV-VNGHTCMSECVRLNNPVILSKLMLHNP  379 (446)
T ss_pred             HHHHHHCCC----------ccccHHHHHHHhCHHHHHHHHHHCCCCCCCc-cccccHHHHHHHcCCHHHHHHHHhcCc
Confidence            999999753          4579999999999999999999999999985 589999999999999999999999753

>PHA02730 ankyrin-like protein; Provisional

Probab=100.00  E-value=2.2e-49  Score=378.92  Aligned_cols=425  Identities=14%  Similarity=0.085  Sum_probs=310.6

Q ss_pred             HHHHHHHhcCCCCC-CCCCCCChHHHHHHHhC---CHHHHHHHHHcCCCCCCCCCCCCChhHHHHhcC--chhHHHHHHH
Q psy12891         51 RCALMLLKSGAGPN-LTTDDGQTPVHAAAKYG---NLVTLQLLLEDGGDPMYKNKIGETPLHLASRNC--KAEVVDLLIQ  124 (567)
Q Consensus        51 ~~~~~Ll~~g~~~~-~~~~~g~t~L~~A~~~g---~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~~--~~~iv~~Ll~  124 (567)
                      ..+++.++.-+++| .+|.+|+||||+|+..|   +.++|++|+++||+++.+|..|.||||+|+..+  +.|+|++|++
T Consensus        21 ~~~~~~~~~~~~in~~kd~~G~TaLh~A~~~~~~~~~eivklLLs~GAdin~kD~~G~TPLh~Aa~~~~~~~eIv~~Ll~  100 (672)
T PHA02730         21 KKIKLEIETCHNLSKHIDRRGNNALHCYVSNKCDTDIKIVRLLLSRGVERLCRNNEGLTPLGVYSKRKYVKSQIVHLLIS  100 (672)
T ss_pred             HHHHHHHHHhcchhhhcCCCCCcHHHHHHHcCCcCcHHHHHHHHhCCCCCcccCCCCCChHHHHHHcCCCcHHHHHHHHh
Confidence            34666777777888 88889999999999997   599999999999999999999999999999977  7999999999


Q ss_pred             hhhhhhhhHHhhhhcccccccccHHHHHHHhCCcccccccccccHHHHHHHHH-cCCCcccccc----CCCccHHHHHHh
Q psy12891        125 FVQNISQEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLE-AGADVSLQTK----QNHETAFHYCAV  199 (567)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~~~v~~Ll~-~g~~~~~~~~----~~~~~~l~~a~~  199 (567)
                      .|++.+       .+..+..+.+||+.++...         +.+.+++++|++ .+++++....    ..+.+|++++..
T Consensus       101 ~~~~~~-------~~~~~~~~d~~l~~y~~s~---------n~~~~~vk~Li~~~~~~~~~~~~~~~~~~~~~~~yl~~~  164 (672)
T PHA02730        101 SYSNAS-------NELTSNINDFDLYSYMSSD---------NIDLRLLKYLIVDKRIRPSKNTNYYIHCLGLVDIYVTTP  164 (672)
T ss_pred             cCCCCC-------cccccccCCchHHHHHHhc---------CCcHHHHHHHHHhcCCChhhhhhhhccccchhhhhHhcC
Confidence            977632       3556777899999998833         567889999997 7788886643    356899999999


Q ss_pred             cCCHHHHHHHHHhccCcchh--hhhhcCCCCCChHHHHHH------hcCcHHHHHHHHhCCCCCCccCCCCCCHHHH--H
Q psy12891        200 AGNNDVLTGMLEQMSGTEIS--KALNKQTSIGWTPLLIAC------NRGHMELVNTMLNNHARVDVFDQEGRSALHL--A  269 (567)
Q Consensus       200 ~~~~~~~~~Ll~~~~~~~~~--~~~~~~~~~~~~~L~~A~------~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~--a  269 (567)
                      .++.+++++|+++++...--  +..........+.||+++      ..++.+++++|+++|++++.+|..|+||||+  +
T Consensus       165 ~~~~eIvklLi~~g~~v~g~~~~~~~~~~~~c~~~l~~~il~~~~~~~n~~eiv~lLIs~GadIN~kd~~G~TpLh~~~~  244 (672)
T PHA02730        165 NPRPEVLLWLLKSECYSTGYVFRSCMYDSDRCKNSLHYYILSHRESESLSKDVIKCLIDNNVSIHGRDEGGSLPIQYYWS  244 (672)
T ss_pred             CCchHHHHHHHHcCCcccccccccccccCCccchhHHHHHHhhhhhhccCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHH
Confidence            99999999999998876200  001122333445566443      4568999999999999999999999999996  4


Q ss_pred             HHcCCeeeeccccccccccccCCCCCCCCCCCccccchhhhhhhhhhcCCCHHH----HHHH----cCcHHHHHHHHHcC
Q psy12891        270 AEHGYLKVSSGKSLKHSVMSFRLPPHNIIPNGFLVHDHAAVIDILTLRKQTPLH----LAAE----AGQLQVCKLLLDLG  341 (567)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~L~----~a~~----~~~~~~v~~Ll~~g  341 (567)
                      ...++.++++.+........                 ...++..+  .-+..|+    .-.+    .-+.++|+.|++.+
T Consensus       245 ~~~~~~eiv~~Li~~~~~~~-----------------~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~  305 (672)
T PHA02730        245 CSTIDIEIVKLLIKDVDTCS-----------------VYDDISQP--YIRGVLADYLNKRFRVTPYNVDMEIVNLLIEGR  305 (672)
T ss_pred             cCcccHHHHHHHHhcccccc-----------------ccccccch--hhhhhHHHhhhhhhhcccCCcchHHHHHHhhcc
Confidence            44455777763221000000                 00000000  0000000    0001    11346777777754


Q ss_pred             CCC-------CCcCcCCCC---------------------HHHHHHHcC---CHHHHHHHHHhCCCCccccCCCCCcHHH
Q psy12891        342 ASI-------DATDDQGQK---------------------PIHVAAQNN---FPEVAQIFLRAHPSLVTATTKDGNTCAH  390 (567)
Q Consensus       342 ~~~-------~~~~~~g~t---------------------~L~~A~~~~---~~~~~~~Ll~~~~~~~~~~~~~~~~~l~  390 (567)
                      -..       -..+..|.+                     .|+.-.+++   +.+++++|++++++. +.. ..|.||||
T Consensus       306 ~~~~~~~~~~~~~~~~~~n~~~~~~i~~~~~~~~~~~~q~~l~~Y~~~~~~v~ieIvelLIs~GAdI-N~k-~~G~TpLH  383 (672)
T PHA02730        306 HTLIDVMRSITSYDSREYNHYIIDNILKRFRQQDESIVQAMLINYLHYGDMVSIPILRCMLDNGATM-DKT-TDNNYPLH  383 (672)
T ss_pred             CcchhhhhccccccccccchhHHHHHHHhhhccchhHHHHHHHHHHhcCCcCcHHHHHHHHHCCCCC-CcC-CCCCcHHH
Confidence            331       113444433                     556556644   588999999998874 443 68889999


Q ss_pred             HHHHcCC----HHHHHHHHhcCCCcccccCCCCCCCCHHHH---HHHcC---------cHHHHHHHHHcCCCCCCccCcC
Q psy12891        391 IAAMQGS----VGVIEELMKFDRSGVISARNRVTEATPLQL---AAEGG---------HANVVRVLVKAGASCTDENKTG  454 (567)
Q Consensus       391 ~a~~~~~----~~~~~~ll~~~~~~~~~~~~~~~~~t~L~~---A~~~~---------~~~~v~~Ll~~g~~~~~~~~~g  454 (567)
                      +|+..++    .+++++|+++|++... ...+..|.||||.   |...+         ..+++++|+++|+++|.+|..|
T Consensus       384 ~Aa~~nnn~i~~eIvelLIs~Ga~~dI-N~kd~~G~T~Lh~~i~a~~~n~~~~~~e~~~~~ivk~LIs~GADINakD~~G  462 (672)
T PHA02730        384 DYFVNNNNIVDVNVVRFIVENNGHMAI-NHVSNNGRLCMYGLILSRFNNCGYHCYETILIDVFDILSKYMDDIDMIDNEN  462 (672)
T ss_pred             HHHHHcCCcchHHHHHHHHHcCCCccc-cccccCCCchHhHHHHHHhccccccccchhHHHHHHHHHhcccchhccCCCC
Confidence            8888774    7999999988764323 2334478899984   33222         2357999999999999999999


Q ss_pred             CcHHHHHHHcCcHHHHHHHHhcccccccccc-cCCcHHHHHHH--cCCHHHHHHHHhcCCCC
Q psy12891        455 FTAVHLAAQNGHNQVLEEMRSSKALNVYSKK-LGVTALHVAAY--FGQADTVRELLSHVPGT  513 (567)
Q Consensus       455 ~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~-~g~t~l~~A~~--~~~~~~~~~Ll~~~~~~  513 (567)
                      +||||+|+..++.+++++|+++|++++.++. .|.||||+|+.  .++.+++++|+++++..
T Consensus       463 ~TPLh~Aa~~~~~eive~LI~~GAdIN~~d~~~g~TaL~~Aa~~~~~~~eIv~~LLs~ga~i  524 (672)
T PHA02730        463 KTLLYYAVDVNNIQFARRLLEYGASVNTTSRSIINTAIQKSSYRRENKTKLVDLLLSYHPTL  524 (672)
T ss_pred             CCHHHHHHHhCCHHHHHHHHHCCCCCCCCCCcCCcCHHHHHHHhhcCcHHHHHHHHHcCCCH
Confidence            9999999999999999999999999999986 58999999987  47899999999998765

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=100.00  E-value=1e-49  Score=389.25  Aligned_cols=405  Identities=16%  Similarity=0.133  Sum_probs=285.1

Q ss_pred             hcCchHHHHHHHhcC-CCCCCC-CCCCChHHHHHHH--hCCHHHHHHHHHcCCCCCCCCCCCCChhHHHHhcCch--hHH
Q psy12891         46 VKDGDRCALMLLKSG-AGPNLT-TDDGQTPVHAAAK--YGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKA--EVV  119 (567)
Q Consensus        46 ~~~~~~~~~~Ll~~g-~~~~~~-~~~g~t~L~~A~~--~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~~~~--~iv  119 (567)
                      ...+.+++++|+++| +|+|.+ +..|.||||+|+.  .++.+++++|+++|++++.+|..|.||||+|+..|+.  ++|
T Consensus       151 ~~v~leiVk~LLe~G~ADIN~~~d~~G~TpLH~A~~n~~~~~eIVklLLe~GADVN~kD~~G~TPLH~Aa~~g~~~~eIV  230 (764)
T PHA02716        151 RGIDLDLIKYMVDVGIVNLNYVCKKTGYGILHAYLGNMYVDIDILEWLCNNGVNVNLQNNHLITPLHTYLITGNVCASVI  230 (764)
T ss_pred             cCCCHHHHHHHHHCCCCCcccccCCCCCcHHHHHHHhccCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCHHHH
Confidence            357779999999999 999998 8999999999864  4679999999999999999999999999999999964  899


Q ss_pred             HHHHHhhhhhhhhHHhhhhcccccccccHHHHHHHhCCcccccccccccHHHHHHHHHcCCCccccccCCCccHH---HH
Q psy12891        120 DLLIQFVQNISQEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGADVSLQTKQNHETAF---HY  196 (567)
Q Consensus       120 ~~Ll~~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~l---~~  196 (567)
                      ++|+++|++         ++.++..|.||||+|+...        ...+.++++.|++.+......   ....++   ..
T Consensus       231 klLLe~GAD---------VN~kD~~G~TPLh~Ai~~a--------~n~~~EIvkiLie~~d~n~~~---~~~~~L~~~i~  290 (764)
T PHA02716        231 KKIIELGGD---------MDMKCVNGMSPIMTYIINI--------DNINPEITNIYIESLDGNKVK---NIPMILHSYIT  290 (764)
T ss_pred             HHHHHcCCC---------CCCCCCCCCCHHHHHHHhh--------hccCHHHHHHHHHhccccccc---cchhhhHHHHH
Confidence            999999998         7888999999999987521        145778899999875432211   112233   34


Q ss_pred             HHhcCCHHHHHHHHHhccCcchhhhhhcCCCCCChHHHHHHh--cCcHHHHHHHHhCCCCCCccCCCCCCHHHHHHHcCC
Q psy12891        197 CAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIACN--RGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGY  274 (567)
Q Consensus       197 a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~L~~A~~--~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~  274 (567)
                      |+..|+.+++++|++.++..      +.++..|.||||+|+.  .++.+++++|+++|++++.+|..|+||||+|+....
T Consensus       291 AA~~g~leiVklLLe~GAdI------N~kD~~G~TPLH~Aaa~~~~~~eIVklLLe~GADIN~kD~~G~TPLH~A~~~la  364 (764)
T PHA02716        291 LARNIDISVVYSFLQPGVKL------HYKDSAGRTCLHQYILRHNISTDIIKLLHEYGNDLNEPDNIGNTVLHTYLSMLS  364 (764)
T ss_pred             HHHcCCHHHHHHHHhCCCce------eccCCCCCCHHHHHHHHhCCCchHHHHHHHcCCCCccCCCCCCCHHHHHHHhhh
Confidence            78999999999999987653      6788999999999864  467899999999999999999999999999875321


Q ss_pred             eeeeccccccccccccCCCCCCCCCCCccccchhhhhhhhhhcCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCcCCCCH
Q psy12891        275 LKVSSGKSLKHSVMSFRLPPHNIIPNGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKP  354 (567)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~  354 (567)
                      .  ..                                 ..+..       +...++.+++++|+++|++++.++..|.||
T Consensus       365 v--~~---------------------------------~ld~~-------~~~~~~~eVVklLL~~GADIn~kn~~G~TP  402 (764)
T PHA02716        365 V--VN---------------------------------ILDPE-------TDNDIRLDVIQCLISLGADITAVNCLGYTP  402 (764)
T ss_pred             h--hc---------------------------------ccccc-------ccccChHHHHHHHHHCCCCCCCcCCCCCCh
Confidence            0  00                                 00000       012468899999999999999999999999


Q ss_pred             HHH----HHHcCCHHHHHHHHHhCCCCcc-------ccCCCCCc--HHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCC
Q psy12891        355 IHV----AAQNNFPEVAQIFLRAHPSLVT-------ATTKDGNT--CAHIAAMQGSVGVIEELMKFDRSGVISARNRVTE  421 (567)
Q Consensus       355 L~~----A~~~~~~~~~~~Ll~~~~~~~~-------~~~~~~~~--~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~  421 (567)
                      ||.    |...+..+++++|++.+.....       .....+.+  .+|.++..++.+...++.+.....          
T Consensus       403 Lh~y~~~a~n~~~~dIvklLis~~~~~~~~~~~~q~ll~~~d~~~~~lhh~~a~~~~~~~~~~~~~~~~~----------  472 (764)
T PHA02716        403 LTSYICTAQNYMYYDIIDCLISDKVLNMVKHRILQDLLIRVDDTPCIIHHIIAKYNIPTDLYTDEYEPYD----------  472 (764)
T ss_pred             HHHHHHHHHhcChHHHHHHHHhCcchhhhhhhhhhhhhhccCcchhhHHHHHHhcCcchhhhhhhhhhcc----------
Confidence            993    2335779999999987543110       00112222  355555555544433332211000          


Q ss_pred             CCHHHHHHHcCcHHHHHHHHHcCCCCCCccCcCCcHHHHHHHcCcH-----HHHHHHHhcccccccccccCCcHHHHHHH
Q psy12891        422 ATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHN-----QVLEEMRSSKALNVYSKKLGVTALHVAAY  496 (567)
Q Consensus       422 ~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~-----~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~  496 (567)
                              .....+++..++..+.++|..|..|+||||+|+..|+.     +++++|++.|++++.+|..|+||||+|++
T Consensus       473 --------~~~~~~v~~~~ii~~~nvN~~D~~G~TPLh~Aa~~g~~~~v~~e~~k~LL~~GADIN~~d~~G~TPLh~A~~  544 (764)
T PHA02716        473 --------STKIHDVYHCAIIERYNNAVCETSGMTPLHVSIISHTNANIVMDSFVYLLSIQYNINIPTKNGVTPLMLTMR  544 (764)
T ss_pred             --------ccccchhhHHHHHhhccccccCCCCCCHHHHHHHcCCccchhHHHHHHHHhCCCCCcccCCCCCCHHHHHHH
Confidence                    00111334444445556666666666666666666554     33466666666666666666666666666


Q ss_pred             cCCH-----HHHHHHHhcCCCCCCCCCCCCcccccccCCCCCCCHHHHHHHcCCHHHHHHHHhc
Q psy12891        497 FGQA-----DTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVRLLLNS  555 (567)
Q Consensus       497 ~~~~-----~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~  555 (567)
                      .|+.     ++++.|++++++..                   .+.|++|...++.+++.+|..+
T Consensus       545 ~g~~~~~~~eIvk~LL~~ga~~~-------------------~~~l~~~~~~~~~~~~~ll~~~  589 (764)
T PHA02716        545 NNRLSGHQWYIVKNILDKRPNVD-------------------IVIIFLDKCYANGKFPSLLLSE  589 (764)
T ss_pred             cCCccccHHHHHHHHHhcCCCcc-------------------hHHHHHHhhhhhhHHHHHHHHc
Confidence            6654     66666666655431                   1246666666666666666654

>PHA02730 ankyrin-like protein; Provisional

Probab=100.00  E-value=5.9e-48  Score=369.09  Aligned_cols=391  Identities=16%  Similarity=0.140  Sum_probs=295.8

Q ss_pred             HHHHHHHHHcCCCCC-CCCCCCCChhHHHHhcC---chhHHHHHHHhhhhhhhhHHhhhhcccccccccHHHHHHHhCCc
Q psy12891         83 LVTLQLLLEDGGDPM-YKNKIGETPLHLASRNC---KAEVVDLLIQFVQNISQEKVLEYVNSVNEDGASALHYACQVTKA  158 (567)
Q Consensus        83 ~~~v~~Ll~~ga~~~-~~~~~g~t~L~~A~~~~---~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~  158 (567)
                      ...+++.++.-+++| .+|..|+||||+|+..+   +.++|++|+++|++         ++.+|..|.||||+|+..+  
T Consensus        20 ~~~~~~~~~~~~~in~~kd~~G~TaLh~A~~~~~~~~~eivklLLs~GAd---------in~kD~~G~TPLh~Aa~~~--   88 (672)
T PHA02730         20 YKKIKLEIETCHNLSKHIDRRGNNALHCYVSNKCDTDIKIVRLLLSRGVE---------RLCRNNEGLTPLGVYSKRK--   88 (672)
T ss_pred             HHHHHHHHHHhcchhhhcCCCCCcHHHHHHHcCCcCcHHHHHHHHhCCCC---------CcccCCCCCChHHHHHHcC--
Confidence            467788888888888 88899999999999987   59999999999999         7899999999999998754  


Q ss_pred             ccccccccccHHHHHHHHHcCCCcccc-ccCCCccHHHHHHh--cCCHHHHHHHHHhc-cCcchhhhhhcCC-CCCChHH
Q psy12891        159 ELIPITSKEDQKTVKLLLEAGADVSLQ-TKQNHETAFHYCAV--AGNNDVLTGMLEQM-SGTEISKALNKQT-SIGWTPL  233 (567)
Q Consensus       159 ~~~~~~~~~~~~~v~~Ll~~g~~~~~~-~~~~~~~~l~~a~~--~~~~~~~~~Ll~~~-~~~~~~~~~~~~~-~~~~~~L  233 (567)
                             .++.+++++|++.|++.+.. .+..+.+|++.++.  +++.+++++|+..+ .+++.  ..+.++ ..|.+|+
T Consensus        89 -------~~~~eIv~~Ll~~~~~~~~~~~~~~~d~~l~~y~~s~n~~~~~vk~Li~~~~~~~~~--~~~~~~~~~~~~~~  159 (672)
T PHA02730         89 -------YVKSQIVHLLISSYSNASNELTSNINDFDLYSYMSSDNIDLRLLKYLIVDKRIRPSK--NTNYYIHCLGLVDI  159 (672)
T ss_pred             -------CCcHHHHHHHHhcCCCCCcccccccCCchHHHHHHhcCCcHHHHHHHHHhcCCChhh--hhhhhccccchhhh
Confidence                   23678899999997755332 23335889999888  88899999999733 23221  111222 3789999


Q ss_pred             HHHHhcCcHHHHHHHHhCCCCCCc-------cCCCCC-CHHHHHHHcCCeeeeccccccccccccCCCCCCCCCCCcccc
Q psy12891        234 LIACNRGHMELVNTMLNNHARVDV-------FDQEGR-SALHLAAEHGYLKVSSGKSLKHSVMSFRLPPHNIIPNGFLVH  305 (567)
Q Consensus       234 ~~A~~~~~~~~v~~Ll~~g~~~~~-------~~~~~~-t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~  305 (567)
                      +.+...++.++|++|+++|++++-       .+.... |.|++.+....                               
T Consensus       160 yl~~~~~~~eIvklLi~~g~~v~g~~~~~~~~~~~~c~~~l~~~il~~~-------------------------------  208 (672)
T PHA02730        160 YVTTPNPRPEVLLWLLKSECYSTGYVFRSCMYDSDRCKNSLHYYILSHR-------------------------------  208 (672)
T ss_pred             hHhcCCCchHHHHHHHHcCCcccccccccccccCCccchhHHHHHHhhh-------------------------------
Confidence            999999999999999999999851       222222 34443433221                               


Q ss_pred             chhhhhhhhhhcCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCcCCCCHHHH--HHHcCCHHHHHHHHH-----------
Q psy12891        306 DHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHV--AAQNNFPEVAQIFLR-----------  372 (567)
Q Consensus       306 ~~~~~~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~--A~~~~~~~~~~~Ll~-----------  372 (567)
                                         +..+++.+++++|+++|+++|.+|..|.||||+  +...++.|++++|++           
T Consensus       209 -------------------~~~~n~~eiv~lLIs~GadIN~kd~~G~TpLh~~~~~~~~~~eiv~~Li~~~~~~~~~~~~  269 (672)
T PHA02730        209 -------------------ESESLSKDVIKCLIDNNVSIHGRDEGGSLPIQYYWSCSTIDIEIVKLLIKDVDTCSVYDDI  269 (672)
T ss_pred             -------------------hhhccCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCcccHHHHHHHHhccccccccccc
Confidence                               123456677777777777777777777777764  333345777777776           


Q ss_pred             ---------------------hCCCCccc--------------------cCCCCCc---------------------HHH
Q psy12891        373 ---------------------AHPSLVTA--------------------TTKDGNT---------------------CAH  390 (567)
Q Consensus       373 ---------------------~~~~~~~~--------------------~~~~~~~---------------------~l~  390 (567)
                                           .+.+. ..                    .+..|.+                     .|+
T Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~d~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~i~~~~~~~~~~~~q~~l~  348 (672)
T PHA02730        270 SQPYIRGVLADYLNKRFRVTPYNVDM-EIVNLLIEGRHTLIDVMRSITSYDSREYNHYIIDNILKRFRQQDESIVQAMLI  348 (672)
T ss_pred             cchhhhhhHHHhhhhhhhcccCCcch-HHHHHHhhccCcchhhhhccccccccccchhHHHHHHHhhhccchhHHHHHHH
Confidence                                 22221 11                    3444543                     445


Q ss_pred             HHHHcC---CHHHHHHHHhcCCCcccccCCCCCCCCHHHHHHHcCc----HHHHHHHHHcCC--CCCCccCcCCcHHHH-
Q psy12891        391 IAAMQG---SVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGH----ANVVRVLVKAGA--SCTDENKTGFTAVHL-  460 (567)
Q Consensus       391 ~a~~~~---~~~~~~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~~~----~~~v~~Ll~~g~--~~~~~~~~g~t~l~~-  460 (567)
                      .=...+   +.+++++|+++|++...   . ..|.||||+|+..++    .+++++|+++|+  +++.++..|.||||. 
T Consensus       349 ~Y~~~~~~v~ieIvelLIs~GAdIN~---k-~~G~TpLH~Aa~~nnn~i~~eIvelLIs~Ga~~dIN~kd~~G~T~Lh~~  424 (672)
T PHA02730        349 NYLHYGDMVSIPILRCMLDNGATMDK---T-TDNNYPLHDYFVNNNNIVDVNVVRFIVENNGHMAINHVSNNGRLCMYGL  424 (672)
T ss_pred             HHHhcCCcCcHHHHHHHHHCCCCCCc---C-CCCCcHHHHHHHHcCCcchHHHHHHHHHcCCCccccccccCCCchHhHH
Confidence            444434   68999999999988552   2 478999999998875    899999999998  688999999999984 


Q ss_pred             --HHHcC---------cHHHHHHHHhcccccccccccCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcccccccC
Q psy12891        461 --AAQNG---------HNQVLEEMRSSKALNVYSKKLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELG  529 (567)
Q Consensus       461 --A~~~~---------~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~  529 (567)
                        |...+         ..+++++|+++|++++.+|..|+||||+|+..++.+++++|+++|++.             +..
T Consensus       425 i~a~~~n~~~~~~e~~~~~ivk~LIs~GADINakD~~G~TPLh~Aa~~~~~eive~LI~~GAdI-------------N~~  491 (672)
T PHA02730        425 ILSRFNNCGYHCYETILIDVFDILSKYMDDIDMIDNENKTLLYYAVDVNNIQFARRLLEYGASV-------------NTT  491 (672)
T ss_pred             HHHHhccccccccchhHHHHHHHHHhcccchhccCCCCCCHHHHHHHhCCHHHHHHHHHCCCCC-------------CCC
Confidence              33232         235799999999999999999999999999999999999999998876             445


Q ss_pred             CC-CCCCHHHHHHHc--CCHHHHHHHHhccCCcccc
Q psy12891        530 SE-SGMTPLHLAAYS--GNENVVRLLLNSAGVQVDA  562 (567)
Q Consensus       530 ~~-~g~t~l~~A~~~--~~~~~v~~Ll~~~g~~~~~  562 (567)
                      +. .|.||||+|+..  ++.+++++|+++ |++++.
T Consensus       492 d~~~g~TaL~~Aa~~~~~~~eIv~~LLs~-ga~i~~  526 (672)
T PHA02730        492 SRSIINTAIQKSSYRRENKTKLVDLLLSY-HPTLET  526 (672)
T ss_pred             CCcCCcCHHHHHHHhhcCcHHHHHHHHHc-CCCHHH
Confidence            54 589999999974  799999999997 877653

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=100.00  E-value=1.7e-46  Score=366.74  Aligned_cols=388  Identities=18%  Similarity=0.155  Sum_probs=282.7

Q ss_pred             CCCCCCChHHHHH-----HHhCCHHHHHHHHHcC-CCCCCC-CCCCCChhHHHHhc--CchhHHHHHHHhhhhhhhhHHh
Q psy12891         65 LTTDDGQTPVHAA-----AKYGNLVTLQLLLEDG-GDPMYK-NKIGETPLHLASRN--CKAEVVDLLIQFVQNISQEKVL  135 (567)
Q Consensus        65 ~~~~~g~t~L~~A-----~~~g~~~~v~~Ll~~g-a~~~~~-~~~g~t~L~~A~~~--~~~~iv~~Ll~~~~~~~~~~~~  135 (567)
                      ..++++..+++..     ...++.++|++|+++| +++|.+ +..|.||||+|+..  ++.+++++|++.|++       
T Consensus       132 ~~~~~d~~~~~~y~~al~~~~v~leiVk~LLe~G~ADIN~~~d~~G~TpLH~A~~n~~~~~eIVklLLe~GAD-------  204 (764)
T PHA02716        132 IPNNGDMDILYTYFNSPNTRGIDLDLIKYMVDVGIVNLNYVCKKTGYGILHAYLGNMYVDIDILEWLCNNGVN-------  204 (764)
T ss_pred             CCCcccchHHHHHHhhhcccCCCHHHHHHHHHCCCCCcccccCCCCCcHHHHHHHhccCCHHHHHHHHHcCCC-------
Confidence            3444455555543     3568899999999999 999998 89999999998753  578999999999988       


Q ss_pred             hhhcccccccccHHHHHHHhCCcccccccccccHHHHHHHHHcCCCccccccCCCccHHHHHH---hcCCHHHHHHHHHh
Q psy12891        136 EYVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGADVSLQTKQNHETAFHYCA---VAGNNDVLTGMLEQ  212 (567)
Q Consensus       136 ~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~l~~a~---~~~~~~~~~~Ll~~  212 (567)
                        ++.++..|.||||+|+..++         ...++|++|+++|++++..+.. |.||||+|+   .+++.++++.+++.
T Consensus       205 --VN~kD~~G~TPLH~Aa~~g~---------~~~eIVklLLe~GADVN~kD~~-G~TPLh~Ai~~a~n~~~EIvkiLie~  272 (764)
T PHA02716        205 --VNLQNNHLITPLHTYLITGN---------VCASVIKKIIELGGDMDMKCVN-GMSPIMTYIINIDNINPEITNIYIES  272 (764)
T ss_pred             --CCCCCCCCCCHHHHHHHcCC---------CCHHHHHHHHHcCCCCCCCCCC-CCCHHHHHHHhhhccCHHHHHHHHHh
Confidence              78899999999999998653         2357899999999999987654 599999885   56789999999886


Q ss_pred             ccCcchhhhhhcCCCCCChHH---HHHHhcCcHHHHHHHHhCCCCCCccCCCCCCHHHHHHHcCCeeeeccccccccccc
Q psy12891        213 MSGTEISKALNKQTSIGWTPL---LIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVSSGKSLKHSVMS  289 (567)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~~L---~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~~~~~~~  289 (567)
                      .....        ......++   ..|+..|+.+++++|+++|++++.+|..|+||||+|+..+                
T Consensus       273 ~d~n~--------~~~~~~~L~~~i~AA~~g~leiVklLLe~GAdIN~kD~~G~TPLH~Aaa~~----------------  328 (764)
T PHA02716        273 LDGNK--------VKNIPMILHSYITLARNIDISVVYSFLQPGVKLHYKDSAGRTCLHQYILRH----------------  328 (764)
T ss_pred             ccccc--------cccchhhhHHHHHHHHcCCHHHHHHHHhCCCceeccCCCCCCHHHHHHHHh----------------
Confidence            43211        01112233   3478899999999999999999999988888888765432                


Q ss_pred             cCCCCCCCCCCCccccchhhhhhhhhhcCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCcCCCCHHHHHHHc--------
Q psy12891        290 FRLPPHNIIPNGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQN--------  361 (567)
Q Consensus       290 ~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~--------  361 (567)
                                                            .++.+++++|+++|++++.+|..|.||||.|+..        
T Consensus       329 --------------------------------------~~~~eIVklLLe~GADIN~kD~~G~TPLH~A~~~lav~~~ld  370 (764)
T PHA02716        329 --------------------------------------NISTDIIKLLHEYGNDLNEPDNIGNTVLHTYLSMLSVVNILD  370 (764)
T ss_pred             --------------------------------------CCCchHHHHHHHcCCCCccCCCCCCCHHHHHHHhhhhhcccc
Confidence                                                  3467899999999999999999999999998752        


Q ss_pred             ------CCHHHHHHHHHhCCCCccccCCCCCcHHHH----HHHcCCHHHHHHHHhcCCCcccccCC-----CCCCCC--H
Q psy12891        362 ------NFPEVAQIFLRAHPSLVTATTKDGNTCAHI----AAMQGSVGVIEELMKFDRSGVISARN-----RVTEAT--P  424 (567)
Q Consensus       362 ------~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~----a~~~~~~~~~~~ll~~~~~~~~~~~~-----~~~~~t--~  424 (567)
                            ++.+++++|++++++ ++..+..|+||||.    |...+..+++++|++.+.........     ...+.+  +
T Consensus       371 ~~~~~~~~~eVVklLL~~GAD-In~kn~~G~TPLh~y~~~a~n~~~~dIvklLis~~~~~~~~~~~~q~ll~~~d~~~~~  449 (764)
T PHA02716        371 PETDNDIRLDVIQCLISLGAD-ITAVNCLGYTPLTSYICTAQNYMYYDIIDCLISDKVLNMVKHRILQDLLIRVDDTPCI  449 (764)
T ss_pred             ccccccChHHHHHHHHHCCCC-CCCcCCCCCChHHHHHHHHHhcChHHHHHHHHhCcchhhhhhhhhhhhhhccCcchhh
Confidence                  567777777777665 56677777777773    22235567777777654321110000     001111  2


Q ss_pred             HHHHHHcCcHHHHHHHHHcCCCCCCccCcCCcHHHHHHHcCcHHHHHHHHhcccccccccccCCcHHHHHHHcCCH----
Q psy12891        425 LQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLGVTALHVAAYFGQA----  500 (567)
Q Consensus       425 L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~----  500 (567)
                      +|.++..+..++..++.+...-               ......+++..++..+.+++..|..|+||||+|+..|+.    
T Consensus       450 lhh~~a~~~~~~~~~~~~~~~~---------------~~~~~~~v~~~~ii~~~nvN~~D~~G~TPLh~Aa~~g~~~~v~  514 (764)
T PHA02716        450 IHHIIAKYNIPTDLYTDEYEPY---------------DSTKIHDVYHCAIIERYNNAVCETSGMTPLHVSIISHTNANIV  514 (764)
T ss_pred             HHHHHHhcCcchhhhhhhhhhc---------------cccccchhhHHHHHhhccccccCCCCCCHHHHHHHcCCccchh
Confidence            3333333333332222211100               000122345555566677888899999999999999886    


Q ss_pred             -HHHHHHHhcCCCCCCCCCCCCcccccccCCCCCCCHHHHHHHcCCH-----HHHHHHHhccCCccccc
Q psy12891        501 -DTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNE-----NVVRLLLNSAGVQVDAQ  563 (567)
Q Consensus       501 -~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~-----~~v~~Ll~~~g~~~~~~  563 (567)
                       +++++|+++|++.             +.+|..|.||||+|+++|+.     ++|++||++ |++++++
T Consensus       515 ~e~~k~LL~~GADI-------------N~~d~~G~TPLh~A~~~g~~~~~~~eIvk~LL~~-ga~~~~~  569 (764)
T PHA02716        515 MDSFVYLLSIQYNI-------------NIPTKNGVTPLMLTMRNNRLSGHQWYIVKNILDK-RPNVDIV  569 (764)
T ss_pred             HHHHHHHHhCCCCC-------------cccCCCCCCHHHHHHHcCCccccHHHHHHHHHhc-CCCcchH
Confidence             4559999998876             67899999999999999976     999999997 9998875

>KOG0510|consensus

Probab=100.00  E-value=3e-47  Score=354.85  Aligned_cols=340  Identities=26%  Similarity=0.347  Sum_probs=295.3

Q ss_pred             hcCCCCCCCCCCCChHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCChhHHHHhcCchhHHHHHHHhhhhhhhhHHhhh
Q psy12891         58 KSGAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVVDLLIQFVQNISQEKVLEY  137 (567)
Q Consensus        58 ~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~~~~~~~~~~~~~  137 (567)
                      .+-+..+..|..+.||||+|+.....+.|++|++.|+++...+.++.+|+|+|+..++.+.++.|+++|.+         
T Consensus        76 ~~~~~~~a~D~~~n~~l~~a~~~~~~~~i~~Lls~gad~~~~n~~~~aplh~A~~~~~~s~L~~Ll~~~~d---------  146 (929)
T KOG0510|consen   76 SKLAISYAKDSADNTPLHAAVEYNQGDKIQVLLSYGADTPLRNLNKNAPLHLAADSGNYSCLKLLLDYGAD---------  146 (929)
T ss_pred             hhhhhhhhhhcccCchhHHHhhcchHHHHHHHHhcCCCCChhhhhccCchhhccccchHHHHHHHHHhcCC---------
Confidence            44455667888999999999999999999999999999999999999999999999999999999999977         


Q ss_pred             hcccccccccHHHHHHHhCCcccccccccccHHHHHHHHHcCCCccccccCCCccHHHHHHhcCCHHHHHHHHHhccCcc
Q psy12891        138 VNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGADVSLQTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTE  217 (567)
Q Consensus       138 ~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~  217 (567)
                      ++..+..+.||||.|+..+           +.+..+.|++.|+++...+.. +.+|+|.|+++|..++.+..+.+. +.+
T Consensus       147 vnl~de~~~TpLh~A~~~~-----------~~E~~k~Li~~~a~~~K~~~~-~~~~iH~aa~s~s~e~mEi~l~~~-g~~  213 (929)
T KOG0510|consen  147 VNLEDENGFTPLHLAARKN-----------KVEAKKELINKGADPCKSDID-GNFPIHEAARSGSKECMEIFLPEH-GYE  213 (929)
T ss_pred             ccccccCCCchhhHHHhcC-----------hHHHHHHHHhcCCCCCcccCc-CCchHHHHHHhcchhhhhhhhccc-cch
Confidence            7889999999999999844           455689999999999866554 489999999999999999999832 233


Q ss_pred             hhhhhhcCCCCCChHHHHHHhcCcHHHHHHHHhCCCCCCccCCCCCCHHHHHHHcCCeeeeccccccccccccCCCCCCC
Q psy12891        218 ISKALNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVSSGKSLKHSVMSFRLPPHNI  297 (567)
Q Consensus       218 ~~~~~~~~~~~~~~~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (567)
                      ....++..+..+.+|||.|+..|+.++++.+++.|........+       +                            
T Consensus       214 r~~~in~~~n~~~~pLhlAve~g~~e~lk~~L~n~~~~a~~~~~-------~----------------------------  258 (929)
T KOG0510|consen  214 RQTHINFDNNEKATPLHLAVEGGDIEMLKMCLQNGKKIADVQLD-------A----------------------------  258 (929)
T ss_pred             hhcccccccCCCCcchhhhhhcCCHHHHHHHHhCccccchhhhH-------H----------------------------
Confidence            34556778888999999999999999999999988655321110       1                            


Q ss_pred             CCCCccccchhhhhhhhhhcCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCcCCCCHHHHHHHcCCHHHHHHHHH-hCCC
Q psy12891        298 IPNGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLR-AHPS  376 (567)
Q Consensus       298 ~~~~~ll~~~~~~~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~-~~~~  376 (567)
                            ..+...-++..|.+|.||||+|++.|+++.++.|+..|++++.++.++.||||.|+++|+..+++.|++ .+..
T Consensus       259 ------~~q~kelv~~~d~dg~tpLH~a~r~G~~~svd~Ll~~Ga~I~~kn~d~~spLH~AA~yg~~ntv~rLL~~~~~r  332 (929)
T KOG0510|consen  259 ------MQQEKELVNDEDNDGCTPLHYAARQGGPESVDNLLGFGASINSKNKDEESPLHFAAIYGRINTVERLLQESDTR  332 (929)
T ss_pred             ------HHHHHHHhhcccccCCchHHHHHHcCChhHHHHHHHcCCcccccCCCCCCchHHHHHcccHHHHHHHHhCcCcc
Confidence                  112344567789999999999999999999999999999999999999999999999999999999999 7777


Q ss_pred             CccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCccCcCCc
Q psy12891        377 LVTATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFT  456 (567)
Q Consensus       377 ~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t  456 (567)
                      +.+..|-.|+||||.|+..|+..+++.|++.|+.-......+.+|.||||.|++.|+..+|++|+.+|+++..+|..|.+
T Consensus       333 llne~D~~g~tpLHlaa~~gH~~v~qlLl~~GA~~~~~~e~D~dg~TaLH~Aa~~g~~~av~~Li~~Ga~I~~~n~~g~S  412 (929)
T KOG0510|consen  333 LLNESDLHGMTPLHLAAKSGHDRVVQLLLNKGALFLNMSEADSDGNTALHLAAKYGNTSAVQKLISHGADIGVKNKKGKS  412 (929)
T ss_pred             ccccccccCCCchhhhhhcCHHHHHHHHHhcChhhhcccccccCCchhhhHHHHhccHHHHHHHHHcCCceeeccccccc
Confidence            78888899999999999999999999999998874432244789999999999999999999999999999999999999


Q ss_pred             HHHH
Q psy12891        457 AVHL  460 (567)
Q Consensus       457 ~l~~  460 (567)
                      ++++
T Consensus       413 A~~~  416 (929)
T KOG0510|consen  413 AFDT  416 (929)
T ss_pred             cccc
Confidence            9884

>KOG0510|consensus

Probab=100.00  E-value=4.8e-47  Score=353.50  Aligned_cols=376  Identities=27%  Similarity=0.362  Sum_probs=296.0

Q ss_pred             CCCCCCCCCChHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCChhHHHHhcCchhHHHHHHHhhhhhhhhHHhhhhccc
Q psy12891         62 GPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVVDLLIQFVQNISQEKVLEYVNSV  141 (567)
Q Consensus        62 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~~~~~~~~~~~~~~~~~  141 (567)
                      +++....+-.++.+.+...   |..+++++....+..++..|.|++|.|+..+..     +.+ -         ....+.
T Consensus        23 ~~~~~~~d~~~~~~~~~~d---D~~tli~~kns~~~~~~~~gd~~~~~~~~~~y~-----~~~-~---------~~~~a~   84 (929)
T KOG0510|consen   23 DIRQPVADLDSQALADTLD---DRHTLILEKNSSTPGKRAFGDTELHHASARNYI-----LSK-L---------AISYAK   84 (929)
T ss_pred             hhhhhhHHHhHHHHHhhHH---HHHHHHHHhccccchhhhhchhHHHHHHhhcch-----hhh-h---------hhhhhh
Confidence            3443443444444444433   666677777666667777777777777776655     111 1         114556


Q ss_pred             ccccccHHHHHHHhCCcccccccccccHHHHHHHHHcCCCccccccCCCccHHHHHHhcCCHHHHHHHHHhccCcchhhh
Q psy12891        142 NEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGADVSLQTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKA  221 (567)
Q Consensus       142 ~~~~~t~L~~a~~~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~  221 (567)
                      |..+++|||+|+..           ...+.++.|++.|++++..+... .+|+|+|+..++.++++.|++.+.+.     
T Consensus        85 D~~~n~~l~~a~~~-----------~~~~~i~~Lls~gad~~~~n~~~-~aplh~A~~~~~~s~L~~Ll~~~~dv-----  147 (929)
T KOG0510|consen   85 DSADNTPLHAAVEY-----------NQGDKIQVLLSYGADTPLRNLNK-NAPLHLAADSGNYSCLKLLLDYGADV-----  147 (929)
T ss_pred             hcccCchhHHHhhc-----------chHHHHHHHHhcCCCCChhhhhc-cCchhhccccchHHHHHHHHHhcCCc-----
Confidence            77777777777763           44555777777777777665554 77788888888888888888776443     


Q ss_pred             hhcCCCCCChHHHHHHhcCcHHHHHHHHhCCCCCCccCCCCCCHHHHHHHcCCeeeeccccccccccccCCCCCCCCCCC
Q psy12891        222 LNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVSSGKSLKHSVMSFRLPPHNIIPNG  301 (567)
Q Consensus       222 ~~~~~~~~~~~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  301 (567)
                       +..+..+.||||.|+..++.+..+.|++.|+++...+.+|++|+|.|+.+|..++.+.....                 
T Consensus       148 -nl~de~~~TpLh~A~~~~~~E~~k~Li~~~a~~~K~~~~~~~~iH~aa~s~s~e~mEi~l~~-----------------  209 (929)
T KOG0510|consen  148 -NLEDENGFTPLHLAARKNKVEAKKELINKGADPCKSDIDGNFPIHEAARSGSKECMEIFLPE-----------------  209 (929)
T ss_pred             -cccccCCCchhhHHHhcChHHHHHHHHhcCCCCCcccCcCCchHHHHHHhcchhhhhhhhcc-----------------
Confidence             56777788888888888888877888888888888888888888888888877776621110                 


Q ss_pred             ccccchhhhhhhhhhcCCCHHHHHHHcCcHHHHHHHHHcCCC---------------CCCcCcCCCCHHHHHHHcCCHHH
Q psy12891        302 FLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGAS---------------IDATDDQGQKPIHVAAQNNFPEV  366 (567)
Q Consensus       302 ~ll~~~~~~~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~~g~~---------------~~~~~~~g~t~L~~A~~~~~~~~  366 (567)
                       --......++..+..+.+|||.|+..|+.++++.+++.|..               ++..|..|.||||+|++.|+.+.
T Consensus       210 -~g~~r~~~in~~~n~~~~pLhlAve~g~~e~lk~~L~n~~~~a~~~~~~~~q~kelv~~~d~dg~tpLH~a~r~G~~~s  288 (929)
T KOG0510|consen  210 -HGYERQTHINFDNNEKATPLHLAVEGGDIEMLKMCLQNGKKIADVQLDAMQQEKELVNDEDNDGCTPLHYAARQGGPES  288 (929)
T ss_pred             -ccchhhcccccccCCCCcchhhhhhcCCHHHHHHHHhCccccchhhhHHHHHHHHHhhcccccCCchHHHHHHcCChhH
Confidence             00124566777888899999999999999999999988754               34568899999999999999999


Q ss_pred             HHHHHHhCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCCCCHHHHHHHcCcHHHHHHHHHcCCC
Q psy12891        367 AQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGAS  446 (567)
Q Consensus       367 ~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~  446 (567)
                      ++.|+..+.+ ++.++.++.||||.|+..|+.+.++.|++ ..+....+..+..|.||||.|+++|+..+++.|++.|+.
T Consensus       289 vd~Ll~~Ga~-I~~kn~d~~spLH~AA~yg~~ntv~rLL~-~~~~rllne~D~~g~tpLHlaa~~gH~~v~qlLl~~GA~  366 (929)
T KOG0510|consen  289 VDNLLGFGAS-INSKNKDEESPLHFAAIYGRINTVERLLQ-ESDTRLLNESDLHGMTPLHLAAKSGHDRVVQLLLNKGAL  366 (929)
T ss_pred             HHHHHHcCCc-ccccCCCCCCchHHHHHcccHHHHHHHHh-CcCccccccccccCCCchhhhhhcCHHHHHHHHHhcChh
Confidence            9999999998 68889999999999999999999999999 566667888888999999999999999999999999999


Q ss_pred             CC---CccCcCCcHHHHHHHcCcHHHHHHHHhcccccccccccCCcHHHH
Q psy12891        447 CT---DENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLGVTALHV  493 (567)
Q Consensus       447 ~~---~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~  493 (567)
                      ..   ..|.+|.||||+|+..|+..+|++|+.+|+++..+++.|.|+|++
T Consensus       367 ~~~~~e~D~dg~TaLH~Aa~~g~~~av~~Li~~Ga~I~~~n~~g~SA~~~  416 (929)
T KOG0510|consen  367 FLNMSEADSDGNTALHLAAKYGNTSAVQKLISHGADIGVKNKKGKSAFDT  416 (929)
T ss_pred             hhcccccccCCchhhhHHHHhccHHHHHHHHHcCCceeeccccccccccc
Confidence            88   469999999999999999999999999999999999999999985

>PHA02874 ankyrin repeat protein; Provisional

Probab=100.00  E-value=4.4e-43  Score=338.96  Aligned_cols=337  Identities=21%  Similarity=0.280  Sum_probs=218.8

Q ss_pred             hHhhhcCchHHHHHHHh-cCCCCCCCCCCCChHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCChhHHHHhcCchhHHH
Q psy12891         42 IAARVKDGDRCALMLLK-SGAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVVD  120 (567)
Q Consensus        42 ~~a~~~~~~~~~~~Ll~-~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~~~~~iv~  120 (567)
                      ..|+..++.+.++.|++ .+..++..+.+|.||||.|+..|+.++|++|++.|++++..+..|.||||+|+..|+.++++
T Consensus         6 ~~ai~~gd~~~v~~ll~~~~~~~n~~~~~~~tpL~~A~~~g~~~iv~~Ll~~Ga~~n~~~~~~~t~L~~A~~~~~~~iv~   85 (434)
T PHA02874          6 RMCIYSGDIEAIEKIIKNKGNCINISVDETTTPLIDAIRSGDAKIVELFIKHGADINHINTKIPHPLLTAIKIGAHDIIK   85 (434)
T ss_pred             HHHHhcCCHHHHHHHHHcCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHH
Confidence            45667777777777775 34556667777777777777777777777777777777777777777777777777777777


Q ss_pred             HHHHhhhhhhhhHHhhhhcccccccccHHHHHHHhCCcccccccccccHHHHHHHHHcCCCccccccCCCccHHHHHHhc
Q psy12891        121 LLIQFVQNISQEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGADVSLQTKQNHETAFHYCAVA  200 (567)
Q Consensus       121 ~Ll~~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~l~~a~~~  200 (567)
                      +|+++|++..                 .+..  .           ....+++++|++.|++++.                
T Consensus        86 ~Ll~~g~~~~-----------------~~~~--~-----------~~~~~~i~~ll~~g~d~n~----------------  119 (434)
T PHA02874         86 LLIDNGVDTS-----------------ILPI--P-----------CIEKDMIKTILDCGIDVNI----------------  119 (434)
T ss_pred             HHHHCCCCCC-----------------cchh--c-----------cCCHHHHHHHHHCcCCCCC----------------
Confidence            7777665421                 0000  0           1234455666666655543                


Q ss_pred             CCHHHHHHHHHhccCcchhhhhhcCCCCCChHHHHHHhcCcHHHHHHHHhCCCCCCccCCCCCCHHHHHHHcCCeeeecc
Q psy12891        201 GNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVSSG  280 (567)
Q Consensus       201 ~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~  280 (567)
                                              ++..|.||||+|+..|+.+++++|+++|++++..+..|.|                
T Consensus       120 ------------------------~~~~g~T~Lh~A~~~~~~~~v~~Ll~~gad~n~~d~~g~t----------------  159 (434)
T PHA02874        120 ------------------------KDAELKTFLHYAIKKGDLESIKMLFEYGADVNIEDDNGCY----------------  159 (434)
T ss_pred             ------------------------CCCCCccHHHHHHHCCCHHHHHHHHhCCCCCCCcCCCCCC----------------
Confidence                                    3444555555565556666666666666555554443333                


Q ss_pred             ccccccccccCCCCCCCCCCCccccchhhhhhhhhhcCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCcCCCCHHHHHHH
Q psy12891        281 KSLKHSVMSFRLPPHNIIPNGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQ  360 (567)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~  360 (567)
                                                              |||+|+..|+.+++++|+++|++++..+..|.||||+|+.
T Consensus       160 ----------------------------------------pLh~A~~~~~~~iv~~Ll~~g~~~n~~~~~g~tpL~~A~~  199 (434)
T PHA02874        160 ----------------------------------------PIHIAIKHNFFDIIKLLLEKGAYANVKDNNGESPLHNAAE  199 (434)
T ss_pred             ----------------------------------------HHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHHH
Confidence                                                    3333334445566666666666666666666666666666


Q ss_pred             cCCHHHHHHHHHhCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCCCCHHHHHHHcC-cHHHHHH
Q psy12891        361 NNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGG-HANVVRV  439 (567)
Q Consensus       361 ~~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~~-~~~~v~~  439 (567)
                      .|+.+++++|++.+++ ....+..|.||||.|+..+. +.+++|+. +.+   ....+..|.||||+|+..+ +.+++++
T Consensus       200 ~g~~~iv~~Ll~~g~~-i~~~~~~g~TpL~~A~~~~~-~~i~~Ll~-~~~---in~~d~~G~TpLh~A~~~~~~~~iv~~  273 (434)
T PHA02874        200 YGDYACIKLLIDHGNH-IMNKCKNGFTPLHNAIIHNR-SAIELLIN-NAS---INDQDIDGSTPLHHAINPPCDIDIIDI  273 (434)
T ss_pred             cCCHHHHHHHHhCCCC-CcCCCCCCCCHHHHHHHCCh-HHHHHHHc-CCC---CCCcCCCCCCHHHHHHhcCCcHHHHHH
Confidence            6666666666665554 34555566666666665543 44455543 222   3345557889999998865 7899999


Q ss_pred             HHHcCCCCCCccCcCCcHHHHHHHcC-cHHHHHHHHhcccccccccccC-CcHHHHHHHcCCHHHHHHHHhcC
Q psy12891        440 LVKAGASCTDENKTGFTAVHLAAQNG-HNQVLEEMRSSKALNVYSKKLG-VTALHVAAYFGQADTVRELLSHV  510 (567)
Q Consensus       440 Ll~~g~~~~~~~~~g~t~l~~A~~~~-~~~~v~~Ll~~~~~~~~~~~~g-~t~l~~A~~~~~~~~~~~Ll~~~  510 (567)
                      |+++|++++.+|..|+|||++|+..+ ..++++.|++.+......+..+ .+++..+....+.++.+++.+..
T Consensus       274 Ll~~gad~n~~d~~g~TpL~~A~~~~~~~~~ik~ll~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~c~  346 (434)
T PHA02874        274 LLYHKADISIKDNKGENPIDTAFKYINKDPVIKDIIANAVLIKEADKLKDSDFLEHIEIKDNKEFSDFIKECN  346 (434)
T ss_pred             HHHCcCCCCCCCCCCCCHHHHHHHhCCccHHHHHHHHhcCchhhccccchhHHHHHHHHhccchHHHHHHHHH
Confidence            99999999999999999999999887 6778999999887665544433 45677777667766666666543

>PHA02874 ankyrin repeat protein; Provisional

Probab=100.00  E-value=4.1e-42  Score=332.21  Aligned_cols=337  Identities=20%  Similarity=0.290  Sum_probs=272.0

Q ss_pred             hhHHHHhcCchhHHHHHHHhhhhhhhhHHhhhhcccccccccHHHHHHHhCCcccccccccccHHHHHHHHHcCCCcccc
Q psy12891        106 PLHLASRNCKAEVVDLLIQFVQNISQEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGADVSLQ  185 (567)
Q Consensus       106 ~L~~A~~~~~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~  185 (567)
                      .|..|+..|+.++++.|++.+...        ++..+..+.|||+.|+.           .++.++|++|++.|++++..
T Consensus         4 ~l~~ai~~gd~~~v~~ll~~~~~~--------~n~~~~~~~tpL~~A~~-----------~g~~~iv~~Ll~~Ga~~n~~   64 (434)
T PHA02874          4 DLRMCIYSGDIEAIEKIIKNKGNC--------INISVDETTTPLIDAIR-----------SGDAKIVELFIKHGADINHI   64 (434)
T ss_pred             HHHHHHhcCCHHHHHHHHHcCCCC--------CCCcCCCCCCHHHHHHH-----------cCCHHHHHHHHHCCCCCCCC
Confidence            567788888888888888754432        56667789999999998           45667799999999999876


Q ss_pred             ccCCCccHHHHHHhcCCHHHHHHHHHhccCcchhhhhhcCCCCCChHHHHHHhcCcHHHHHHHHhCCCCCCccCCCCCCH
Q psy12891        186 TKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSA  265 (567)
Q Consensus       186 ~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~  265 (567)
                      ... +.+||+.|+..|+.+++++|++.+.+...                .+......+++++|++.|++++..+..|.  
T Consensus        65 ~~~-~~t~L~~A~~~~~~~iv~~Ll~~g~~~~~----------------~~~~~~~~~~i~~ll~~g~d~n~~~~~g~--  125 (434)
T PHA02874         65 NTK-IPHPLLTAIKIGAHDIIKLLIDNGVDTSI----------------LPIPCIEKDMIKTILDCGIDVNIKDAELK--  125 (434)
T ss_pred             CCC-CCCHHHHHHHcCCHHHHHHHHHCCCCCCc----------------chhccCCHHHHHHHHHCcCCCCCCCCCCc--
Confidence            544 48999999999999999999998754321                12233467889999999988877665544  


Q ss_pred             HHHHHHcCCeeeeccccccccccccCCCCCCCCCCCccccchhhhhhhhhhcCCCHHHHHHHcCcHHHHHHHHHcCCCCC
Q psy12891        266 LHLAAEHGYLKVSSGKSLKHSVMSFRLPPHNIIPNGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASID  345 (567)
Q Consensus       266 l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~~g~~~~  345 (567)
                                                                            ||||+|+..|+.+++++|+++|++++
T Consensus       126 ------------------------------------------------------T~Lh~A~~~~~~~~v~~Ll~~gad~n  151 (434)
T PHA02874        126 ------------------------------------------------------TFLHYAIKKGDLESIKMLFEYGADVN  151 (434)
T ss_pred             ------------------------------------------------------cHHHHHHHCCCHHHHHHHHhCCCCCC
Confidence                                                                  55566666788999999999999999


Q ss_pred             CcCcCCCCHHHHHHHcCCHHHHHHHHHhCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCCCCHH
Q psy12891        346 ATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPL  425 (567)
Q Consensus       346 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~t~L  425 (567)
                      .++..|.||||+|+..++.+++++|++.++. .+..+..|.||||+|+..|+.+++++|++.+.+.   ...+..|.|||
T Consensus       152 ~~d~~g~tpLh~A~~~~~~~iv~~Ll~~g~~-~n~~~~~g~tpL~~A~~~g~~~iv~~Ll~~g~~i---~~~~~~g~TpL  227 (434)
T PHA02874        152 IEDDNGCYPIHIAIKHNFFDIIKLLLEKGAY-ANVKDNNGESPLHNAAEYGDYACIKLLIDHGNHI---MNKCKNGFTPL  227 (434)
T ss_pred             CcCCCCCCHHHHHHHCCcHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCC---cCCCCCCCCHH
Confidence            9999999999999999999999999999877 6778899999999999999999999999988763   33445799999


Q ss_pred             HHHHHcCcHHHHHHHHHcCCCCCCccCcCCcHHHHHHHcC-cHHHHHHHHhcccccccccccCCcHHHHHHHcC-CHHHH
Q psy12891        426 QLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNG-HNQVLEEMRSSKALNVYSKKLGVTALHVAAYFG-QADTV  503 (567)
Q Consensus       426 ~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~-~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~-~~~~~  503 (567)
                      |.|+..+. +.+++|+ .|++++.++..|+||||+|+..+ +.+++++|+++|++++.+|..|+|||++|+..+ ..+++
T Consensus       228 ~~A~~~~~-~~i~~Ll-~~~~in~~d~~G~TpLh~A~~~~~~~~iv~~Ll~~gad~n~~d~~g~TpL~~A~~~~~~~~~i  305 (434)
T PHA02874        228 HNAIIHNR-SAIELLI-NNASINDQDIDGSTPLHHAINPPCDIDIIDILLYHKADISIKDNKGENPIDTAFKYINKDPVI  305 (434)
T ss_pred             HHHHHCCh-HHHHHHH-cCCCCCCcCCCCCCHHHHHHhcCCcHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHhCCccHHH
Confidence            99999876 5666666 69999999999999999999876 789999999999999999999999999999987 78899


Q ss_pred             HHHHhcCCCCCCCCCCCCcccccccCCCCCCCHHHHHHHcCCHHHHHHH
Q psy12891        504 RELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVRLL  552 (567)
Q Consensus       504 ~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~L  552 (567)
                      +.|++++.....            .......+++..+...++....+++
T Consensus       306 k~ll~~~~~~~~------------~~~~~~~~~~~~~~i~~~~~~~~~~  342 (434)
T PHA02874        306 KDIIANAVLIKE------------ADKLKDSDFLEHIEIKDNKEFSDFI  342 (434)
T ss_pred             HHHHHhcCchhh------------ccccchhHHHHHHHHhccchHHHHH
Confidence            999988653321            1112224456666655555554444

>PHA03095 ankyrin-like protein; Provisional

Probab=100.00  E-value=1.8e-42  Score=341.13  Aligned_cols=288  Identities=27%  Similarity=0.318  Sum_probs=189.1

Q ss_pred             hhhcCchHHHHHHHhcCCCCCCCCCCCChHHHHHHHhC---CHHHHHHHHHcCCCCCCCCCCCCChhHHHHhcCc-hhHH
Q psy12891         44 ARVKDGDRCALMLLKSGAGPNLTTDDGQTPVHAAAKYG---NLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCK-AEVV  119 (567)
Q Consensus        44 a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g---~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~~~-~~iv  119 (567)
                      +......++++.|+++|+++|.++..|.||||+|+..|   +.+++++|+++|++++.++..|.||||+|+..|+ .+++
T Consensus        21 ~~~~~~~~~v~~Ll~~ga~vn~~~~~g~t~Lh~a~~~~~~~~~~iv~~Ll~~Gadin~~~~~g~TpLh~A~~~~~~~~iv  100 (471)
T PHA03095         21 NASNVTVEEVRRLLAAGADVNFRGEYGKTPLHLYLHYSSEKVKDIVRLLLEAGADVNAPERCGFTPLHLYLYNATTLDVI  100 (471)
T ss_pred             cCCCCCHHHHHHHHHcCCCcccCCCCCCCHHHHHHHhcCCChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCcHHHH
Confidence            33444556666677777777777767777777777666   6777777777777777666666677777666663 4444


Q ss_pred             HHHHHhhhhhhhhHHhhhhcccccccccHHHHHHHhCCcccccccccccHHHHHHHHHcCCCccccccCCCccHHHHHHh
Q psy12891        120 DLLIQFVQNISQEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGADVSLQTKQNHETAFHYCAV  199 (567)
Q Consensus       120 ~~Ll~~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~l~~a~~  199 (567)
                      ++|+                                                     ++|++++.               
T Consensus       101 ~lLl-----------------------------------------------------~~ga~in~---------------  112 (471)
T PHA03095        101 KLLI-----------------------------------------------------KAGADVNA---------------  112 (471)
T ss_pred             HHHH-----------------------------------------------------HcCCCCCC---------------
Confidence            4444                                                     44444432               


Q ss_pred             cCCHHHHHHHHHhccCcchhhhhhcCCCCCChHHHHHH--hcCcHHHHHHHHhCCCCCCccCCCCCCHHHHHHHcCCeee
Q psy12891        200 AGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIAC--NRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKV  277 (567)
Q Consensus       200 ~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~L~~A~--~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~  277 (567)
                                               ++..|.||||+|+  ..++.+++++|+++|++++..+..|.||||+++..+    
T Consensus       113 -------------------------~~~~g~tpLh~a~~~~~~~~~iv~~Ll~~gad~~~~d~~g~tpL~~a~~~~----  163 (471)
T PHA03095        113 -------------------------KDKVGRTPLHVYLSGFNINPKVIRLLLRKGADVNALDLYGMTPLAVLLKSR----  163 (471)
T ss_pred             -------------------------CCCCCCCHHHHHhhCCcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcC----
Confidence                                     2223444444444  334678999999999999998888888888776543    


Q ss_pred             eccccccccccccCCCCCCCCCCCccccchhhhhhhhhhcCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCcCCCCHHHH
Q psy12891        278 SSGKSLKHSVMSFRLPPHNIIPNGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHV  357 (567)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~  357 (567)
                                                                        .+..+++++|+++|++++..+..|.||||+
T Consensus       164 --------------------------------------------------~~~~~iv~~Ll~~g~~~~~~d~~g~t~Lh~  193 (471)
T PHA03095        164 --------------------------------------------------NANVELLRLLIDAGADVYAVDDRFRSLLHH  193 (471)
T ss_pred             --------------------------------------------------CCCHHHHHHHHHcCCCCcccCCCCCCHHHH
Confidence                                                              235789999999999999999999999999


Q ss_pred             HHHc--CCHHHHHHHHHhCCCCccccCCCCCcHHHHHHHcCCH--HHHHHHHhcCCCcccccCCCCCCCCHHHHHHHcCc
Q psy12891        358 AAQN--NFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSV--GVIEELMKFDRSGVISARNRVTEATPLQLAAEGGH  433 (567)
Q Consensus       358 A~~~--~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~--~~~~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~~~  433 (567)
                      ++..  +..++++.|++.+.+ .+..+..|.||||+|+..++.  .+++.+++.+.+.   +..+..|.||||+|+..|+
T Consensus       194 ~~~~~~~~~~i~~~Ll~~g~~-~~~~d~~g~tpLh~Aa~~~~~~~~~v~~ll~~g~di---n~~d~~g~TpLh~A~~~~~  269 (471)
T PHA03095        194 HLQSFKPRARIVRELIRAGCD-PAATDMLGNTPLHSMATGSSCKRSLVLPLLIAGISI---NARNRYGQTPLHYAAVFNN  269 (471)
T ss_pred             HHHHCCCcHHHHHHHHHcCCC-CcccCCCCCCHHHHHHhcCCchHHHHHHHHHcCCCC---CCcCCCCCCHHHHHHHcCC
Confidence            8865  667888888887766 566677777777777766643  3455555544332   2222355566666666666


Q ss_pred             HHHHHHHHHcCCCCCCccCcCCcHHHHHHHcCcHHHHHHHHhccccccc
Q psy12891        434 ANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVY  482 (567)
Q Consensus       434 ~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~  482 (567)
                      .+++++|+++|++++.++..|+|||++|+..|+.+++++|++.+++++.
T Consensus       270 ~~~v~~LL~~gad~n~~~~~g~tpl~~A~~~~~~~~v~~LL~~~~~~~~  318 (471)
T PHA03095        270 PRACRRLIALGADINAVSSDGNTPLSLMVRNNNGRAVRAALAKNPSAET  318 (471)
T ss_pred             HHHHHHHHHcCCCCcccCCCCCCHHHHHHHhCCHHHHHHHHHhCCCHHH
Confidence            6666666666666665555666666666666666666666655554443

>PHA03100 ankyrin repeat protein; Provisional

Probab=100.00  E-value=6.1e-42  Score=337.86  Aligned_cols=288  Identities=25%  Similarity=0.344  Sum_probs=207.6

Q ss_pred             chHHHHHHHhcCCCCCCCCCCCChHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCChhHH-----HHhcCchhHHHHHH
Q psy12891         49 GDRCALMLLKSGAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHL-----ASRNCKAEVVDLLI  123 (567)
Q Consensus        49 ~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~-----A~~~~~~~iv~~Ll  123 (567)
                      ...+++.+++.+...+..+..+.||||.|+..|+.++|++|+++|++++..+..+.||||+     |+..++.+++++|+
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~ivk~Ll~~g~~~~~~~~~~~t~L~~~~~~~a~~~~~~~iv~~Ll   93 (480)
T PHA03100         14 KVKNIKYIIMEDDLNDYSYKKPVLPLYLAKEARNIDVVKILLDNGADINSSTKNNSTPLHYLSNIKYNLTDVKEIVKLLL   93 (480)
T ss_pred             HHHHHHHHHhcCccchhhhcccchhhhhhhccCCHHHHHHHHHcCCCCCCccccCcCHHHHHHHHHHHhhchHHHHHHHH
Confidence            3467888888887777888899999999999999999999999999999999999999999     88888888888888


Q ss_pred             HhhhhhhhhHHhhhhcccccccccHHHHHH--HhCCcccccccccccHHHHHHHHHcCCCccccccCCCccHHHHHHhcC
Q psy12891        124 QFVQNISQEKVLEYVNSVNEDGASALHYAC--QVTKAELIPITSKEDQKTVKLLLEAGADVSLQTKQNHETAFHYCAVAG  201 (567)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~t~L~~a~--~~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~l~~a~~~~  201 (567)
                      +.|++         ++..+..|.||||+|+  .           .++.+++++|+++|++++.                 
T Consensus        94 ~~ga~---------i~~~d~~g~tpL~~A~~~~-----------~~~~~iv~~Ll~~g~~~~~-----------------  136 (480)
T PHA03100         94 EYGAN---------VNAPDNNGITPLLYAISKK-----------SNSYSIVEYLLDNGANVNI-----------------  136 (480)
T ss_pred             HCCCC---------CCCCCCCCCchhhHHHhcc-----------cChHHHHHHHHHcCCCCCc-----------------
Confidence            88776         4566667777777776  4           3455556666666665542                 


Q ss_pred             CHHHHHHHHHhccCcchhhhhhcCCCCCChHHHHHHhcC--cHHHHHHHHhCCCCCCccCCCCCCHHHHHHHcCCeeeec
Q psy12891        202 NNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIACNRG--HMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVSS  279 (567)
Q Consensus       202 ~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~L~~A~~~~--~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~  279 (567)
                                             .+..|.||||+|+..+  +.+++++|+++|++++..+..|.                
T Consensus       137 -----------------------~~~~g~t~L~~A~~~~~~~~~iv~~Ll~~g~din~~d~~g~----------------  177 (480)
T PHA03100        137 -----------------------KNSDGENLLHLYLESNKIDLKILKLLIDKGVDINAKNRYGY----------------  177 (480)
T ss_pred             -----------------------cCCCCCcHHHHHHHcCCChHHHHHHHHHCCCCcccccCCCC----------------
Confidence                                   3445667777777777  78888888888887776654444                


Q ss_pred             cccccccccccCCCCCCCCCCCccccchhhhhhhhhhcCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCcCCCCHHHHHH
Q psy12891        280 GKSLKHSVMSFRLPPHNIIPNGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAA  359 (567)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~  359 (567)
                                                              ||||.|+..|+.+++++|+++|++++..+..|.++++.  
T Consensus       178 ----------------------------------------tpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~--  215 (480)
T PHA03100        178 ----------------------------------------TPLHIAVEKGNIDVIKFLLDNGADINAGDIETLLFTIF--  215 (480)
T ss_pred             ----------------------------------------CHHHHHHHhCCHHHHHHHHHcCCCccCCCCCCCcHHHH--
Confidence                                                    45555556667888888888888888888888777766  


Q ss_pred             HcCCHHHHHHHHHhCCCCccccCCCCCcHHHHHHHcCC--HHHHHHHHhcCCCcccccCCCCCCCCHHHHHHHcCcHHHH
Q psy12891        360 QNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGS--VGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVV  437 (567)
Q Consensus       360 ~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~--~~~~~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v  437 (567)
                                                .||+|.|+..++  .+++++|++.|.+.   +..+..|.||||+|+..|+.+++
T Consensus       216 --------------------------~t~l~~a~~~~~~~~~iv~~Ll~~g~di---n~~d~~g~TpL~~A~~~~~~~iv  266 (480)
T PHA03100        216 --------------------------ETPLHIAACYNEITLEVVNYLLSYGVPI---NIKDVYGFTPLHYAVYNNNPEFV  266 (480)
T ss_pred             --------------------------HhHHHHHHHhCcCcHHHHHHHHHcCCCC---CCCCCCCCCHHHHHHHcCCHHHH
Confidence                                      456666666666  66666666654432   22234566666666666666666


Q ss_pred             HHHHHcCCCCCCccCcCCcHHHHHHHcCcHHHHHHHHhcccccccc
Q psy12891        438 RVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYS  483 (567)
Q Consensus       438 ~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~  483 (567)
                      ++|+++|++++.++..|.||+++|+..++.+++++|+++|++++..
T Consensus       267 ~~Ll~~gad~n~~d~~g~tpl~~A~~~~~~~iv~~Ll~~g~~i~~i  312 (480)
T PHA03100        267 KYLLDLGANPNLVNKYGDTPLHIAILNNNKEIFKLLLNNGPSIKTI  312 (480)
T ss_pred             HHHHHcCCCCCccCCCCCcHHHHHHHhCCHHHHHHHHhcCCCHHHH
Confidence            6666666666666666666666666666666666666666655543

>PHA03095 ankyrin-like protein; Provisional

Probab=100.00  E-value=6.6e-42  Score=337.06  Aligned_cols=286  Identities=22%  Similarity=0.232  Sum_probs=221.3

Q ss_pred             HHHHhcCCHHHHHHHHHhccCcchhhhhhcCCCCCChHHHHHHhcC---cHHHHHHHHhCCCCCCccCCCCCCHHHHHHH
Q psy12891        195 HYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIACNRG---HMELVNTMLNNHARVDVFDQEGRSALHLAAE  271 (567)
Q Consensus       195 ~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~L~~A~~~~---~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~  271 (567)
                      ..++..++.+++++|++.+.+.      +.++..|.||||+|+..+   +.+++++|+++|++++..+..|.||||+|+.
T Consensus        19 ~~~~~~~~~~~v~~Ll~~ga~v------n~~~~~g~t~Lh~a~~~~~~~~~~iv~~Ll~~Gadin~~~~~g~TpLh~A~~   92 (471)
T PHA03095         19 LLNASNVTVEEVRRLLAAGADV------NFRGEYGKTPLHLYLHYSSEKVKDIVRLLLEAGADVNAPERCGFTPLHLYLY   92 (471)
T ss_pred             HHcCCCCCHHHHHHHHHcCCCc------ccCCCCCCCHHHHHHHhcCCChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHH
Confidence            5567788899999999987654      667888999999999988   8999999999999999999899999998888


Q ss_pred             cC-CeeeeccccccccccccCCCCCCCCCCCccccchhhhhhhhhhcCCCHHHHHH--HcCcHHHHHHHHHcCCCCCCcC
Q psy12891        272 HG-YLKVSSGKSLKHSVMSFRLPPHNIIPNGFLVHDHAAVIDILTLRKQTPLHLAA--EAGQLQVCKLLLDLGASIDATD  348 (567)
Q Consensus       272 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~L~~a~--~~~~~~~v~~Ll~~g~~~~~~~  348 (567)
                      .+ ..++++                       ++.+.+.+++..+..|.||||.|+  ..++.+++++|+++|++++..+
T Consensus        93 ~~~~~~iv~-----------------------lLl~~ga~in~~~~~g~tpLh~a~~~~~~~~~iv~~Ll~~gad~~~~d  149 (471)
T PHA03095         93 NATTLDVIK-----------------------LLIKAGADVNAKDKVGRTPLHVYLSGFNINPKVIRLLLRKGADVNALD  149 (471)
T ss_pred             cCCcHHHHH-----------------------HHHHcCCCCCCCCCCCCCHHHHHhhCCcCCHHHHHHHHHcCCCCCccC
Confidence            88 466665                       666777777777777888888877  4456778888888888888777


Q ss_pred             cCCCCHHHHHHHcC--CHHHHHHHHHhCCCCccccCCCCCcHHHHHHHc--CCHHHHHHHHhcCCCcccccCCCCCCCCH
Q psy12891        349 DQGQKPIHVAAQNN--FPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQ--GSVGVIEELMKFDRSGVISARNRVTEATP  424 (567)
Q Consensus       349 ~~g~t~L~~A~~~~--~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~--~~~~~~~~ll~~~~~~~~~~~~~~~~~t~  424 (567)
                      ..|.||||+|+..+  ..+++++|++.+++.. ..+..|.||||.++..  ++.++++.|++.+.+..   ..+..|.||
T Consensus       150 ~~g~tpL~~a~~~~~~~~~iv~~Ll~~g~~~~-~~d~~g~t~Lh~~~~~~~~~~~i~~~Ll~~g~~~~---~~d~~g~tp  225 (471)
T PHA03095        150 LYGMTPLAVLLKSRNANVELLRLLIDAGADVY-AVDDRFRSLLHHHLQSFKPRARIVRELIRAGCDPA---ATDMLGNTP  225 (471)
T ss_pred             CCCCCHHHHHHHcCCCCHHHHHHHHHcCCCCc-ccCCCCCCHHHHHHHHCCCcHHHHHHHHHcCCCCc---ccCCCCCCH
Confidence            78888888777654  5677888887777643 3377777888777754  56777777777766533   344567788


Q ss_pred             HHHHHHcCcH--HHHHHHHHcCCCCCCccCcCCcHHHHHHHcCcHHHHHHHHhcccccccccccCCcHHHHHHHcCCHHH
Q psy12891        425 LQLAAEGGHA--NVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLGVTALHVAAYFGQADT  502 (567)
Q Consensus       425 L~~A~~~~~~--~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~  502 (567)
                      ||+|+..|+.  .+++.|++.|+++|.+|..|+||||+|+..|+.+++++|++.|++++.+|..|+||||+|+..++.++
T Consensus       226 Lh~Aa~~~~~~~~~v~~ll~~g~din~~d~~g~TpLh~A~~~~~~~~v~~LL~~gad~n~~~~~g~tpl~~A~~~~~~~~  305 (471)
T PHA03095        226 LHSMATGSSCKRSLVLPLLIAGISINARNRYGQTPLHYAAVFNNPRACRRLIALGADINAVSSDGNTPLSLMVRNNNGRA  305 (471)
T ss_pred             HHHHHhcCCchHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHhCCHHH
Confidence            8888777764  46777777788888777778888888888888888888888888777777778888888888888888


Q ss_pred             HHHHHhcCCCC
Q psy12891        503 VRELLSHVPGT  513 (567)
Q Consensus       503 ~~~Ll~~~~~~  513 (567)
                      +++|++++++.
T Consensus       306 v~~LL~~~~~~  316 (471)
T PHA03095        306 VRAALAKNPSA  316 (471)
T ss_pred             HHHHHHhCCCH
Confidence            88887776643

>PHA03100 ankyrin repeat protein; Provisional

Probab=100.00  E-value=9.7e-41  Score=329.33  Aligned_cols=288  Identities=23%  Similarity=0.316  Sum_probs=234.9

Q ss_pred             CHHHHHHHHHhccCcchhhhhhcCCCCCChHHHHHHhcCcHHHHHHHHhCCCCCCccCCCCCCHHHHHHHcCCeeeeccc
Q psy12891        202 NNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVSSGK  281 (567)
Q Consensus       202 ~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~~  281 (567)
                      ..++++++++.+.      ..+..+..+.||||.|+..++.+++++|+++|++++..+..+.||||++...         
T Consensus        14 ~~~~~~~~~~~~~------~~~~~~~~~~t~L~~A~~~~~~~ivk~Ll~~g~~~~~~~~~~~t~L~~~~~~---------   78 (480)
T PHA03100         14 KVKNIKYIIMEDD------LNDYSYKKPVLPLYLAKEARNIDVVKILLDNGADINSSTKNNSTPLHYLSNI---------   78 (480)
T ss_pred             HHHHHHHHHhcCc------cchhhhcccchhhhhhhccCCHHHHHHHHHcCCCCCCccccCcCHHHHHHHH---------
Confidence            4567777776642      2355677899999999999999999999999999988777777766663221         


Q ss_pred             cccccccccCCCCCCCCCCCccccchhhhhhhhhhcCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCcCCCCHHHHHH--
Q psy12891        282 SLKHSVMSFRLPPHNIIPNGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAA--  359 (567)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~--  359 (567)
                                                                .|+..++.+++++|+++|++++..+..|.||||+|+  
T Consensus        79 ------------------------------------------~a~~~~~~~iv~~Ll~~ga~i~~~d~~g~tpL~~A~~~  116 (480)
T PHA03100         79 ------------------------------------------KYNLTDVKEIVKLLLEYGANVNAPDNNGITPLLYAISK  116 (480)
T ss_pred             ------------------------------------------HHHhhchHHHHHHHHHCCCCCCCCCCCCCchhhHHHhc
Confidence                                                      066677888888888888888888888888888888  


Q ss_pred             HcCCHHHHHHHHHhCCCCccccCCCCCcHHHHHHHcC--CHHHHHHHHhcCCCcccccCCCCCCCCHHHHHHHcCcHHHH
Q psy12891        360 QNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQG--SVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVV  437 (567)
Q Consensus       360 ~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~--~~~~~~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v  437 (567)
                      ..++.+++++|++.+++ .+..+..|.||||.|+..+  +.+++++|++.+.+..   ..+..|.||||+|+..|+.+++
T Consensus       117 ~~~~~~iv~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~~iv~~Ll~~g~din---~~d~~g~tpL~~A~~~~~~~iv  192 (480)
T PHA03100        117 KSNSYSIVEYLLDNGAN-VNIKNSDGENLLHLYLESNKIDLKILKLLIDKGVDIN---AKNRYGYTPLHIAVEKGNIDVI  192 (480)
T ss_pred             ccChHHHHHHHHHcCCC-CCccCCCCCcHHHHHHHcCCChHHHHHHHHHCCCCcc---cccCCCCCHHHHHHHhCCHHHH
Confidence            88888888888888776 5677888888888888888  8888888888876633   2233788888888888888888


Q ss_pred             HHHHHcCCCCCCccCcC------CcHHHHHHHcCc--HHHHHHHHhcccccccccccCCcHHHHHHHcCCHHHHHHHHhc
Q psy12891        438 RVLVKAGASCTDENKTG------FTAVHLAAQNGH--NQVLEEMRSSKALNVYSKKLGVTALHVAAYFGQADTVRELLSH  509 (567)
Q Consensus       438 ~~Ll~~g~~~~~~~~~g------~t~l~~A~~~~~--~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~  509 (567)
                      ++|+++|++++..+..|      .||||.|+..++  .+++++|++.|++++.+|..|.||||+|+..++.+++++|+++
T Consensus       193 ~~Ll~~ga~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~iv~~Ll~~g~din~~d~~g~TpL~~A~~~~~~~iv~~Ll~~  272 (480)
T PHA03100        193 KFLLDNGADINAGDIETLLFTIFETPLHIAACYNEITLEVVNYLLSYGVPINIKDVYGFTPLHYAVYNNNPEFVKYLLDL  272 (480)
T ss_pred             HHHHHcCCCccCCCCCCCcHHHHHhHHHHHHHhCcCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence            88888888888888888      888888888888  8888888888888888888888888888888888888888888


Q ss_pred             CCCCCCCCCCCCcccccccCCCCCCCHHHHHHHcCCHHHHHHHHhccCCcccccc
Q psy12891        510 VPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVRLLLNSAGVQVDAQT  564 (567)
Q Consensus       510 ~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~g~~~~~~~  564 (567)
                      +++.             +.+|..|.|||++|+++++.+++++|+++ |++++..+
T Consensus       273 gad~-------------n~~d~~g~tpl~~A~~~~~~~iv~~Ll~~-g~~i~~i~  313 (480)
T PHA03100        273 GANP-------------NLVNKYGDTPLHIAILNNNKEIFKLLLNN-GPSIKTII  313 (480)
T ss_pred             CCCC-------------CccCCCCCcHHHHHHHhCCHHHHHHHHhc-CCCHHHHH
Confidence            7744             56678888888888888888888888886 88887643

>PHA02878 ankyrin repeat protein; Provisional

Probab=100.00  E-value=5.4e-39  Score=314.14  Aligned_cols=309  Identities=19%  Similarity=0.199  Sum_probs=228.7

Q ss_pred             CCCCCCCCChHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCChhHHHHhcCchhHHHHHHHhhhhhhhhHHhhhhcccc
Q psy12891         63 PNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVVDLLIQFVQNISQEKVLEYVNSVN  142 (567)
Q Consensus        63 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~~~~~~~~~~~~~~~~~~  142 (567)
                      .+..+..+.||||+|+..|+.++|++|+++|++++.+|..|.||||+|+..|+.++++.|++.+...         .  .
T Consensus        30 ~~~~~~~~~tPLh~A~~~g~~e~vk~Ll~~gadvn~~d~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~---------~--~   98 (477)
T PHA02878         30 STSASLIPFIPLHQAVEARNLDVVKSLLTRGHNVNQPDHRDLTPLHIICKEPNKLGMKEMIRSINKC---------S--V   98 (477)
T ss_pred             cCcccccCcchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCccHhHHHHHHHHHhcc---------c--c
Confidence            3445567899999999999999999999999999999999999999999999999999999876442         1  1


Q ss_pred             cccccHHHHHHHhCCcccccccccccHHHHHHHHHcCCCccccccCCCccHHHHHHhcCCHHHHHHHHHhccCcchhhhh
Q psy12891        143 EDGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGADVSLQTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKAL  222 (567)
Q Consensus       143 ~~~~t~L~~a~~~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~  222 (567)
                      ..+.+|++.|+.           .++.+++++|+..+.+......      +..                          
T Consensus        99 ~~~~~~l~~a~~-----------~~~~ei~~~Ll~~~~~~~~~~~------~~~--------------------------  135 (477)
T PHA02878         99 FYTLVAIKDAFN-----------NRNVEIFKIILTNRYKNIQTID------LVY--------------------------  135 (477)
T ss_pred             ccchhhHHHHHH-----------cCCHHHHHHHHhCcccCcccCc------HHH--------------------------
Confidence            345667777766           3345556777666543221100      000                          


Q ss_pred             hcCCCCCChHHHHHH--hcCcHHHHHHHHhCCCCCCccCCCCCCHHHHHHHcCCeeeeccccccccccccCCCCCCCCCC
Q psy12891        223 NKQTSIGWTPLLIAC--NRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVSSGKSLKHSVMSFRLPPHNIIPN  300 (567)
Q Consensus       223 ~~~~~~~~~~L~~A~--~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (567)
                                +....  ...+.+++++|+++|++++..+..                                       
T Consensus       136 ----------~~~~~~~~~~~~~iv~~Ll~~gadin~~~~~---------------------------------------  166 (477)
T PHA02878        136 ----------IDKKSKDDIIEAEITKLLLSYGADINMKDRH---------------------------------------  166 (477)
T ss_pred             ----------HhhccchhhHHHHHHHHHHHcCCCCCccCCC---------------------------------------
Confidence                      00000  011346888888888888776654                                       


Q ss_pred             CccccchhhhhhhhhhcCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCcCCCCHHHHHHHcCCHHHHHHHHHhCCCCccc
Q psy12891        301 GFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTA  380 (567)
Q Consensus       301 ~~ll~~~~~~~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~  380 (567)
                                      .|.||||+|+.+|+.+++++|+++|++++..+..|.||||.|+..++.+++++|++.+++ ++.
T Consensus       167 ----------------~g~tpLh~A~~~~~~~iv~~Ll~~gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~ga~-in~  229 (477)
T PHA02878        167 ----------------KGNTALHYATENKDQRLTELLLSYGANVNIPDKTNNSPLHHAVKHYNKPIVHILLENGAS-TDA  229 (477)
T ss_pred             ----------------CCCCHHHHHHhCCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCCHHHHHHHHHcCCC-CCC
Confidence                            133455555666778888888888888888888888888888888888888888888776 677


Q ss_pred             cCCCCCcHHHHHHHc-CCHHHHHHHHhcCCCcccccCCCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCccCcCCcHHH
Q psy12891        381 TTKDGNTCAHIAAMQ-GSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVH  459 (567)
Q Consensus       381 ~~~~~~~~l~~a~~~-~~~~~~~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~  459 (567)
                      .+..|.||||+|+.. ++.+++++|+++|.+..  ......|.||||+|  .++.+++++|+++|+++|..|..|.||||
T Consensus       230 ~d~~g~TpLh~A~~~~~~~~iv~~Ll~~gadvn--~~~~~~g~TpLh~A--~~~~~~v~~Ll~~gadin~~d~~g~TpL~  305 (477)
T PHA02878        230 RDKCGNTPLHISVGYCKDYDILKLLLEHGVDVN--AKSYILGLTALHSS--IKSERKLKLLLEYGADINSLNSYKLTPLS  305 (477)
T ss_pred             CCCCCCCHHHHHHHhcCCHHHHHHHHHcCCCCC--ccCCCCCCCHHHHH--ccCHHHHHHHHHCCCCCCCcCCCCCCHHH
Confidence            788888888888865 67888888888877633  23334688999999  56789999999999999999999999999


Q ss_pred             HHHHcC-cHHHHHHHHhcc-----cccccccccCCcHHHHHH
Q psy12891        460 LAAQNG-HNQVLEEMRSSK-----ALNVYSKKLGVTALHVAA  495 (567)
Q Consensus       460 ~A~~~~-~~~~v~~Ll~~~-----~~~~~~~~~g~t~l~~A~  495 (567)
                      +|+..+ ..+++++|+...     .++..++..|..+-..++
T Consensus       306 ~A~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~g~~~n~~~i  347 (477)
T PHA02878        306 SAVKQYLCINIGRILISNICLLKRIKPDIKNSEGFIDNMDCI  347 (477)
T ss_pred             HHHHHcCccchHHHHHHHHHHHHhccCcccCcHHHHHHHHHH
Confidence            999754 456777776553     456666666766544444

>PHA02989 ankyrin repeat protein; Provisional

Probab=100.00  E-value=3e-39  Score=316.65  Aligned_cols=293  Identities=21%  Similarity=0.266  Sum_probs=181.4

Q ss_pred             cCchHHHHHHHhcCCCCCCCCCCCChHHHHHHHhC--CHHHHHHHHHcCCCCCCCCCCCCChhHHHHhcCchhHHHHHHH
Q psy12891         47 KDGDRCALMLLKSGAGPNLTTDDGQTPVHAAAKYG--NLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVVDLLIQ  124 (567)
Q Consensus        47 ~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g--~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~  124 (567)
                      ....+++++|+++|+|+|.+ .+|.||||.++..+  +.++|++|+++||++|.++ .+.||||.|+..+...       
T Consensus        13 ~~~~~~v~~LL~~GadvN~~-~~g~t~l~~~~~~~~~~~~iv~~Ll~~GAdvn~~~-~~~tpL~~a~~~~~~~-------   83 (494)
T PHA02989         13 TVDKNALEFLLRTGFDVNEE-YRGNSILLLYLKRKDVKIKIVKLLIDNGADVNYKG-YIETPLCAVLRNREIT-------   83 (494)
T ss_pred             cCcHHHHHHHHHcCCCcccc-cCCCCHHHHHHhcCCCChHHHHHHHHcCCCccCCC-CCCCcHHHHHhccCcc-------
Confidence            34556777777777777766 45666665544332  5677777777777776654 4466776665543210       


Q ss_pred             hhhhhhhhHHhhhhcccccccccHHHHHHHhCCcccccccccccHHHHHHHHHcCCCccccccCCCccHHHHHHhc---C
Q psy12891        125 FVQNISQEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGADVSLQTKQNHETAFHYCAVA---G  201 (567)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~l~~a~~~---~  201 (567)
                                                              ..+..+++++|+++|++++..+.. |.|||+.|+..   +
T Consensus        84 ----------------------------------------~~~~~~iv~~Ll~~Gadin~~d~~-g~tpL~~a~~~~~~~  122 (494)
T PHA02989         84 ----------------------------------------SNKIKKIVKLLLKFGADINLKTFN-GVSPIVCFIYNSNIN  122 (494)
T ss_pred             ----------------------------------------hhhHHHHHHHHHHCCCCCCCCCCC-CCcHHHHHHHhcccC
Confidence                                                    022345566666666666654433 35555555433   3


Q ss_pred             CHHHHHHHHHhccCcchhhhhhcCCCCCChHHHHHHhc--CcHHHHHHHHhCCCCCCc-cCCCCCCHHHHHHHcCCeeee
Q psy12891        202 NNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIACNR--GHMELVNTMLNNHARVDV-FDQEGRSALHLAAEHGYLKVS  278 (567)
Q Consensus       202 ~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~L~~A~~~--~~~~~v~~Ll~~g~~~~~-~~~~~~t~l~~a~~~~~~~~~  278 (567)
                      +.+++++|+++|++..     +.++..|.||||+|+..  ++.+++++|+++|++++. .+..|.|||++++..+     
T Consensus       123 ~~eiv~~Ll~~Gadin-----~~~d~~g~tpLh~a~~~~~~~~~iv~~Ll~~Gadi~~~~~~~g~tpL~~a~~~~-----  192 (494)
T PHA02989        123 NCDMLRFLLSKGINVN-----DVKNSRGYNLLHMYLESFSVKKDVIKILLSFGVNLFEKTSLYGLTPMNIYLRND-----  192 (494)
T ss_pred             cHHHHHHHHHCCCCcc-----cccCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCccccccccCCChHHHHHhcc-----
Confidence            4555555555544321     23566777777777653  467777777777777765 3455555555544322     


Q ss_pred             ccccccccccccCCCCCCCCCCCccccchhhhhhhhhhcCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCcCCCCHHHHH
Q psy12891        279 SGKSLKHSVMSFRLPPHNIIPNGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVA  358 (567)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A  358 (567)
                                                                     +..++.+++++|+++|++++..+..+.|+|+.+
T Consensus       193 -----------------------------------------------~~~~~~~iv~~Ll~~Ga~vn~~~~~~~t~l~~~  225 (494)
T PHA02989        193 -----------------------------------------------IDVISIKVIKYLIKKGVNIETNNNGSESVLESF  225 (494)
T ss_pred             -----------------------------------------------cccccHHHHHHHHhCCCCccccCCccccHHHHH
Confidence                                                           123577777777777777777777777777765


Q ss_pred             HHcCCHHHHHHHHHhCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCCCCHHHHHHHcCcHHHHH
Q psy12891        359 AQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVR  438 (567)
Q Consensus       359 ~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~  438 (567)
                      +..+.                            +...+..+++++++.. .   ..+..+..|.||||+|+..|+.++++
T Consensus       226 ~~~~~----------------------------~~~~~~~~il~~l~~~-a---dvn~~d~~G~TpL~~Aa~~~~~~~v~  273 (494)
T PHA02989        226 LDNNK----------------------------ILSKKEFKVLNFILKY-I---KINKKDKKGFNPLLISAKVDNYEAFN  273 (494)
T ss_pred             HHhch----------------------------hhcccchHHHHHHHhC-C---CCCCCCCCCCCHHHHHHHhcCHHHHH
Confidence            54321                            1122334555655542 2   23444556778888888888888888


Q ss_pred             HHHHcCCCCCCccCcCCcHHHHHHHcCcHHHHHHHHhccc
Q psy12891        439 VLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKA  478 (567)
Q Consensus       439 ~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~  478 (567)
                      +|+++|+|++.+|..|+||||+|+..|+.+++++|++.+.
T Consensus       274 ~LL~~Gadin~~d~~G~TpL~~A~~~~~~~iv~~LL~~~p  313 (494)
T PHA02989        274 YLLKLGDDIYNVSKDGDTVLTYAIKHGNIDMLNRILQLKP  313 (494)
T ss_pred             HHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHhcCC
Confidence            8888888888888888888888888888888888877764

>PHA02792 ankyrin-like protein; Provisional

Probab=100.00  E-value=1.5e-38  Score=301.07  Aligned_cols=279  Identities=9%  Similarity=0.040  Sum_probs=182.9

Q ss_pred             hhcCCCCCChHHHHHHhcC-------cHHHHHHHHhCCCCCCccCCCCCCHHHHHHHcC--CeeeeccccccccccccCC
Q psy12891        222 LNKQTSIGWTPLLIACNRG-------HMELVNTMLNNHARVDVFDQEGRSALHLAAEHG--YLKVSSGKSLKHSVMSFRL  292 (567)
Q Consensus       222 ~~~~~~~~~~~L~~A~~~~-------~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~--~~~~~~~~~~~~~~~~~~~  292 (567)
                      ++..+..|.||||+|+..+       +.+++++|+++|++++..|..|.||||+|+.+.  ..++++..           
T Consensus       168 i~~~~~~g~t~L~~~i~~~s~~~~~~~~~v~k~Li~~g~~~~~~d~~g~t~l~~~~~~~~i~~ei~~~L-----------  236 (631)
T PHA02792        168 TDYDDRMGKTVLYYYIITRSQDGYATSLDVINYLISHEKEMRYYTYREHTTLYYYVDKCDIKREIFDAL-----------  236 (631)
T ss_pred             cccCCCCCCchHHHHHhhCCcccccCCHHHHHHHHhCCCCcCccCCCCChHHHHHHHcccchHHHHHHH-----------
Confidence            3556666777777777777       677777777777777777777777777777766  33333311           


Q ss_pred             CCCCCCCCCccccchhhhhhhhhhcCCCHHHHHHH------c--CcHHHHHHHHHcCCCCCCcCcCCCCHHHHHHHcCCH
Q psy12891        293 PPHNIIPNGFLVHDHAAVIDILTLRKQTPLHLAAE------A--GQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFP  364 (567)
Q Consensus       293 ~~~~~~~~~~ll~~~~~~~~~~~~~~~t~L~~a~~------~--~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~  364 (567)
                                  .+.....    ......|.--.+      .  =+..+|..|++.+-.-+        .+.......+.
T Consensus       237 ------------~~~~~~~----~~~~~~l~~y~~~~~~~~~~~id~~iv~~ll~~~~~~~--------i~~~~~~~~~~  292 (631)
T PHA02792        237 ------------FDSNYSG----NELMNILSNYLRKQYRNKNHKIDNYIVDKLLSGHDTFY--------ILELCNSLRNN  292 (631)
T ss_pred             ------------Hhccccc----cchHhHHHHHHHHHhccCccCccHHHHHHHHhCCCccc--------hhhhhhhhhhh
Confidence                        1000000    000011111110      1  12448888888653211        11111111222


Q ss_pred             HHHHHHHHhCCCCccccCCCCCcHHHHHHHcC--CHHHHHHHHhcCCCcccccCCCCCCCCHHHHHHHcCcHHHHHHHHH
Q psy12891        365 EVAQIFLRAHPSLVTATTKDGNTCAHIAAMQG--SVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVK  442 (567)
Q Consensus       365 ~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~--~~~~~~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~  442 (567)
                      +++..++.....       .-+..||.=...+  +.+++++|++.|....     +.....+++.|+..|+.+++++|++
T Consensus       293 ~~~~~~~~~~~~-------~~q~~l~~Yl~~~~v~ieiIK~LId~Ga~~~-----r~~~~n~~~~Aa~~gn~eIVelLIs  360 (631)
T PHA02792        293 IIISSILKRYTD-------SIQDLLSEYVSYHTVYINVIKCMIDEGATLY-----RFKHINKYFQKFDNRDPKVVEYILK  360 (631)
T ss_pred             hHHHHHHHHHhH-------HHHHHHHHHHhcCCccHHHHHHHHHCCCccc-----cCCcchHHHHHHHcCCHHHHHHHHH
Confidence            233333222111       1112344434444  6789999999988742     1234567899999999999999999


Q ss_pred             cCCCCCCccCcC--CcHHHHHHHcCcH---HHHHHHHhcccccccccccCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCC
Q psy12891        443 AGASCTDENKTG--FTAVHLAAQNGHN---QVLEEMRSSKALNVYSKKLGVTALHVAAYFGQADTVRELLSHVPGTVKSD  517 (567)
Q Consensus       443 ~g~~~~~~~~~g--~t~l~~A~~~~~~---~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~  517 (567)
                      +||+++.+|..|  .||||+|+.....   +++++|+++|++++.+|..|+||||+|+..++.+++++|++++++.    
T Consensus       361 ~GADIN~kD~~g~~~TpLh~A~~n~~~~v~~IlklLIs~GADIN~kD~~G~TPLh~Aa~~~n~eivelLLs~GADI----  436 (631)
T PHA02792        361 NGNVVVEDDDNIINIMPLFPTLSIHESDVLSILKLCKPYIDDINKIDKHGRSILYYCIESHSVSLVEWLIDNGADI----  436 (631)
T ss_pred             cCCchhhhcCCCCChhHHHHHHHhccHhHHHHHHHHHhcCCccccccccCcchHHHHHHcCCHHHHHHHHHCCCCC----
Confidence            999999988775  6999998877654   4689999999999999999999999999999999999999998765    


Q ss_pred             CCCCcccccccCCCCCCCHHHHHHH----------cCCHHHHHHHHhccCCccc
Q psy12891        518 PPTGASFLGELGSESGMTPLHLAAY----------SGNENVVRLLLNSAGVQVD  561 (567)
Q Consensus       518 ~~~~~~~~~~~~~~~g~t~l~~A~~----------~~~~~~v~~Ll~~~g~~~~  561 (567)
                               +..|..|.|||++|+.          ....++++.|+++ |.++.
T Consensus       437 ---------N~kD~~G~TpL~~A~~~~~~~~~~i~~~~~~il~lLLs~-~p~i~  480 (631)
T PHA02792        437 ---------NITTKYGSTCIGICVILAHACIPEIAELYIKILEIILSK-LPTIE  480 (631)
T ss_pred             ---------CCcCCCCCCHHHHHHHHHhcccHHHHHHHHHHHHHHHhc-CCChh
Confidence                     5678999999999976          2236679999986 76654

>PHA02878 ankyrin repeat protein; Provisional

Probab=100.00  E-value=4.7e-39  Score=314.54  Aligned_cols=297  Identities=19%  Similarity=0.230  Sum_probs=217.4

Q ss_pred             CCCCCChHHHHHHhcCcHHHHHHHHhCCCCCCccCCCCCCHHHHHHHcCCeeeeccccccccccccCCCCCCCCCCCccc
Q psy12891        225 QTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVSSGKSLKHSVMSFRLPPHNIIPNGFLV  304 (567)
Q Consensus       225 ~~~~~~~~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll  304 (567)
                      ....+.||||.|+..|+.++|++|++.|++++..+..|.||||+|+..|+.+.++                       .+
T Consensus        33 ~~~~~~tPLh~A~~~g~~e~vk~Ll~~gadvn~~d~~g~TpLh~A~~~g~~~~v~-----------------------~L   89 (477)
T PHA02878         33 ASLIPFIPLHQAVEARNLDVVKSLLTRGHNVNQPDHRDLTPLHIICKEPNKLGMK-----------------------EM   89 (477)
T ss_pred             ccccCcchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCccHhHHH-----------------------HH
Confidence            3445778888888888888888888888888888888888888888888776665                       22


Q ss_pred             cchhhhhhhhhhcCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCcCCCCHHHHHHHcC--CHHHHHHHHHhCCCCccccC
Q psy12891        305 HDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNN--FPEVAQIFLRAHPSLVTATT  382 (567)
Q Consensus       305 ~~~~~~~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~--~~~~~~~Ll~~~~~~~~~~~  382 (567)
                      ...+...+.  ..+.++++.|+..++.+++++|+..+++......  ...+......+  ..+++++|++.+++ ++..+
T Consensus        90 l~~~~~~~~--~~~~~~l~~a~~~~~~ei~~~Ll~~~~~~~~~~~--~~~~~~~~~~~~~~~~iv~~Ll~~gad-in~~~  164 (477)
T PHA02878         90 IRSINKCSV--FYTLVAIKDAFNNRNVEIFKIILTNRYKNIQTID--LVYIDKKSKDDIIEAEITKLLLSYGAD-INMKD  164 (477)
T ss_pred             HHHHhcccc--ccchhhHHHHHHcCCHHHHHHHHhCcccCcccCc--HHHHhhccchhhHHHHHHHHHHHcCCC-CCccC
Confidence            222222211  3456788888888888888888887654322111  01111111112  24588888888777 56666


Q ss_pred             CC-CCcHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCccCcCCcHHHHH
Q psy12891        383 KD-GNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLA  461 (567)
Q Consensus       383 ~~-~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A  461 (567)
                      .. |.||||+|+..|+.+++++|++.+++.   ...+..|.||||.|+..|+.+++++|+++|++++.+|..|+||||+|
T Consensus       165 ~~~g~tpLh~A~~~~~~~iv~~Ll~~gad~---n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~ga~in~~d~~g~TpLh~A  241 (477)
T PHA02878        165 RHKGNTALHYATENKDQRLTELLLSYGANV---NIPDKTNNSPLHHAVKHYNKPIVHILLENGASTDARDKCGNTPLHIS  241 (477)
T ss_pred             CCCCCCHHHHHHhCCCHHHHHHHHHCCCCC---CCcCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCHHHHH
Confidence            66 888888888888888888888877653   33445788889988888888888888888888888888888999888


Q ss_pred             HHc-CcHHHHHHHHhcccccccccc-cCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcccccccCCCCCCCHHHH
Q psy12891        462 AQN-GHNQVLEEMRSSKALNVYSKK-LGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHL  539 (567)
Q Consensus       462 ~~~-~~~~~v~~Ll~~~~~~~~~~~-~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~  539 (567)
                      +.. ++.+++++|+++|++++.++. .|.||||+|  .++.+++++|++++++.             +..|..|.|||++
T Consensus       242 ~~~~~~~~iv~~Ll~~gadvn~~~~~~g~TpLh~A--~~~~~~v~~Ll~~gadi-------------n~~d~~g~TpL~~  306 (477)
T PHA02878        242 VGYCKDYDILKLLLEHGVDVNAKSYILGLTALHSS--IKSERKLKLLLEYGADI-------------NSLNSYKLTPLSS  306 (477)
T ss_pred             HHhcCCHHHHHHHHHcCCCCCccCCCCCCCHHHHH--ccCHHHHHHHHHCCCCC-------------CCcCCCCCCHHHH
Confidence            865 688888888888888887775 688899888  56788888888887765             5667888889988


Q ss_pred             HHHcC-CHHHHHHHHhc----cCCccccccccC
Q psy12891        540 AAYSG-NENVVRLLLNS----AGVQVDAQTQEN  567 (567)
Q Consensus       540 A~~~~-~~~~v~~Ll~~----~g~~~~~~~~~~  567 (567)
                      |++.+ ..+++++|+.+    .+.+++.++.+|
T Consensus       307 A~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~g  339 (477)
T PHA02878        307 AVKQYLCINIGRILISNICLLKRIKPDIKNSEG  339 (477)
T ss_pred             HHHHcCccchHHHHHHHHHHHHhccCcccCcHH
Confidence            88753 46677777653    246777777654

>PHA02791 ankyrin-like protein; Provisional

Probab=100.00  E-value=5.8e-39  Score=283.42  Aligned_cols=237  Identities=18%  Similarity=0.230  Sum_probs=206.3

Q ss_pred             cCchHHHHHHHhcCCCCCCCCCCCChHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCChhHHHHhcCchhHHHHHHHhh
Q psy12891         47 KDGDRCALMLLKSGAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVVDLLIQFV  126 (567)
Q Consensus        47 ~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~~  126 (567)
                      .+..+++++|+++|++  ..|.+|+||||+|+..|+.+++++|+++|++++..+  +.||||+|+..|+.+++++|++.|
T Consensus         9 ~~~~~~~~~Lis~~a~--~~D~~G~TpLh~Aa~~g~~eiv~~Ll~~ga~~n~~d--~~TpLh~Aa~~g~~eiV~lLL~~G   84 (284)
T PHA02791          9 WKSKQLKSFLSSKDAF--KADVHGHSALYYAIADNNVRLVCTLLNAGALKNLLE--NEFPLHQAATLEDTKIVKILLFSG   84 (284)
T ss_pred             cCHHHHHHHHHhCCCC--CCCCCCCcHHHHHHHcCCHHHHHHHHHCcCCCcCCC--CCCHHHHHHHCCCHHHHHHHHHCC
Confidence            4567899999999884  678999999999999999999999999999998765  689999999999999999999999


Q ss_pred             hhhhhhHHhhhhcccccccccHHHHHHHhCCcccccccccccHHHHHHHHHcCCCccccccCCCccHHHHHHhcCCHHHH
Q psy12891        127 QNISQEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGADVSLQTKQNHETAFHYCAVAGNNDVL  206 (567)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~l~~a~~~~~~~~~  206 (567)
                      ++         ++.++..|.||||+|+.           .++.+++++|+++|++++.....++.||||+|+..|+.+++
T Consensus        85 ad---------vn~~d~~G~TpLh~Aa~-----------~g~~eivk~Ll~~gadin~~~~~g~~TpL~~Aa~~g~~eiv  144 (284)
T PHA02791         85 MD---------DSQFDDKGNTALYYAVD-----------SGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIV  144 (284)
T ss_pred             CC---------CCCCCCCCCCHHHHHHH-----------cCCHHHHHHHHHCCCCcCccCCCCCcHHHHHHHHcCCHHHH
Confidence            87         68889999999999998           45667799999999999877666556999999999999999


Q ss_pred             HHHHHhccCcchhhhhhcCC-CCCChHHHHHHhcCcHHHHHHHHhCCCCCCccCCCCCCHHHHHHHcCCeeeeccccccc
Q psy12891        207 TGMLEQMSGTEISKALNKQT-SIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVSSGKSLKH  285 (567)
Q Consensus       207 ~~Ll~~~~~~~~~~~~~~~~-~~~~~~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~~~  285 (567)
                      ++|+++++..        .+ ..|.||||+|+..|+.+++++|+++|++++..+..|.||                    
T Consensus       145 k~LL~~~~~~--------~d~~~g~TpLh~Aa~~g~~eiv~lLL~~gAd~n~~d~~g~t~--------------------  196 (284)
T PHA02791        145 SYFLSEIPST--------FDLAILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIP--------------------  196 (284)
T ss_pred             HHHHhcCCcc--------cccccCccHHHHHHHcCCHHHHHHHHHCCCCCCcccCCCCCh--------------------
Confidence            9999975422        12 247999999999999999999999999998776555432                    


Q ss_pred             cccccCCCCCCCCCCCccccchhhhhhhhhhcCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCcCCCCHHHHHHHcCCHH
Q psy12891        286 SVMSFRLPPHNIIPNGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPE  365 (567)
Q Consensus       286 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~  365 (567)
                                                         |||+|+..|+.+++++|+++|++++.+|..+ ++|      +..|
T Consensus       197 -----------------------------------~L~~Aa~~~~~e~v~lLl~~Ga~in~~~~~~-~~l------~~~e  234 (284)
T PHA02791        197 -----------------------------------DIKLAIDNKDLEMLQALFKYDINIYSVNLEN-VLL------DDAE  234 (284)
T ss_pred             -----------------------------------HHHHHHHcCCHHHHHHHHHCCCCCccCcccC-ccC------CCHH
Confidence                                               3777788889999999999999999999854 555      8899


Q ss_pred             HHHHHHHhCCCC
Q psy12891        366 VAQIFLRAHPSL  377 (567)
Q Consensus       366 ~~~~Ll~~~~~~  377 (567)
                      ++++|++++.+.
T Consensus       235 ~~~~ll~~~~~~  246 (284)
T PHA02791        235 IAKMIIEKHVEY  246 (284)
T ss_pred             HHHHHHHhhhhh
Confidence            999999987663

>PHA02989 ankyrin repeat protein; Provisional

Probab=100.00  E-value=4.2e-39  Score=315.62  Aligned_cols=284  Identities=18%  Similarity=0.204  Sum_probs=203.9

Q ss_pred             cCChhHHHHHHhhcCCCCChhh-------hHhhhc-CchHHHHHHHhcCCCCCCCCCCCChHHHHHHHhC------CHHH
Q psy12891         20 VKDGDRCALMLLKSGAGPNLTN-------IAARVK-DGDRCALMLLKSGAGPNLTTDDGQTPVHAAAKYG------NLVT   85 (567)
Q Consensus        20 ~g~~~~v~~~L~~~g~~~~~~~-------~~a~~~-~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g------~~~~   85 (567)
                      ..+.+ ++++|+++|+++|...       ..++.. ++.+++++|+++|+|+|.++ .+.||||.|+..+      +.++
T Consensus        13 ~~~~~-~v~~LL~~GadvN~~~~g~t~l~~~~~~~~~~~~iv~~Ll~~GAdvn~~~-~~~tpL~~a~~~~~~~~~~~~~i   90 (494)
T PHA02989         13 TVDKN-ALEFLLRTGFDVNEEYRGNSILLLYLKRKDVKIKIVKLLIDNGADVNYKG-YIETPLCAVLRNREITSNKIKKI   90 (494)
T ss_pred             cCcHH-HHHHHHHcCCCcccccCCCCHHHHHHhcCCCChHHHHHHHHcCCCccCCC-CCCCcHHHHHhccCcchhhHHHH
Confidence            46667 6677999999999642       223333 36899999999999999887 5799999998654      5789


Q ss_pred             HHHHHHcCCCCCCCCCCCCChhHHHHhcCc---hhHHHHHHHhhhhhhhhHHhhhh-cccccccccHHHHHHHhCCcccc
Q psy12891         86 LQLLLEDGGDPMYKNKIGETPLHLASRNCK---AEVVDLLIQFVQNISQEKVLEYV-NSVNEDGASALHYACQVTKAELI  161 (567)
Q Consensus        86 v~~Ll~~ga~~~~~~~~g~t~L~~A~~~~~---~~iv~~Ll~~~~~~~~~~~~~~~-~~~~~~~~t~L~~a~~~~~~~~~  161 (567)
                      +++|+++||+++.++..|.||||.|+..++   .+++++|+++|++         + +.++..|.||||+|+..+     
T Consensus        91 v~~Ll~~Gadin~~d~~g~tpL~~a~~~~~~~~~eiv~~Ll~~Gad---------in~~~d~~g~tpLh~a~~~~-----  156 (494)
T PHA02989         91 VKLLLKFGADINLKTFNGVSPIVCFIYNSNINNCDMLRFLLSKGIN---------VNDVKNSRGYNLLHMYLESF-----  156 (494)
T ss_pred             HHHHHHCCCCCCCCCCCCCcHHHHHHHhcccCcHHHHHHHHHCCCC---------cccccCCCCCCHHHHHHHhc-----
Confidence            999999999999999999999999998777   4788888888877         5 567778888888877533     


Q ss_pred             cccccccHHHHHHHHHcCCCccccccCCCccHHHHHHhcCCHHHHHHHHHhccCcchhhhhhcCCCCCChHHHHHHhcCc
Q psy12891        162 PITSKEDQKTVKLLLEAGADVSLQTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIACNRGH  241 (567)
Q Consensus       162 ~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~L~~A~~~~~  241 (567)
                          .++.+++++|+++|++++......|.||||+|+..+                                   +..++
T Consensus       157 ----~~~~~iv~~Ll~~Gadi~~~~~~~g~tpL~~a~~~~-----------------------------------~~~~~  197 (494)
T PHA02989        157 ----SVKKDVIKILLSFGVNLFEKTSLYGLTPMNIYLRND-----------------------------------IDVIS  197 (494)
T ss_pred             ----cCCHHHHHHHHHcCCCccccccccCCChHHHHHhcc-----------------------------------ccccc
Confidence                346778888888888776533334456665554332                                   01135


Q ss_pred             HHHHHHHHhCCCCCCccCCCCCCHHHHHHHcCCeeeeccccccccccccCCCCCCCCCCCccccchhhhhhhhhhcCCCH
Q psy12891        242 MELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVSSGKSLKHSVMSFRLPPHNIIPNGFLVHDHAAVIDILTLRKQTP  321 (567)
Q Consensus       242 ~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~  321 (567)
                      .+++++|+++|++++..+..+.++++.++..+.......                 .....++ ..+++++..|..|.||
T Consensus       198 ~~iv~~Ll~~Ga~vn~~~~~~~t~l~~~~~~~~~~~~~~-----------------~~il~~l-~~~advn~~d~~G~Tp  259 (494)
T PHA02989        198 IKVIKYLIKKGVNIETNNNGSESVLESFLDNNKILSKKE-----------------FKVLNFI-LKYIKINKKDKKGFNP  259 (494)
T ss_pred             HHHHHHHHhCCCCccccCCccccHHHHHHHhchhhcccc-----------------hHHHHHH-HhCCCCCCCCCCCCCH
Confidence            566666666666666666666666665554332100000                 0000011 2235566666677778


Q ss_pred             HHHHHHcCcHHHHHHHHHcCCCCCCcCcCCCCHHHHHHHcCCHHHHHHHHHhCCC
Q psy12891        322 LHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPS  376 (567)
Q Consensus       322 L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~  376 (567)
                      ||+|+..|+.+++++|+++|+|++.++..|.||||+|+..++.++++.|++..+.
T Consensus       260 L~~Aa~~~~~~~v~~LL~~Gadin~~d~~G~TpL~~A~~~~~~~iv~~LL~~~p~  314 (494)
T PHA02989        260 LLISAKVDNYEAFNYLLKLGDDIYNVSKDGDTVLTYAIKHGNIDMLNRILQLKPG  314 (494)
T ss_pred             HHHHHHhcCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHhcCCC
Confidence            8888888889999999999999999999999999999999999999999987654

>KOG0508|consensus

Probab=100.00  E-value=4.7e-39  Score=281.51  Aligned_cols=186  Identities=30%  Similarity=0.389  Sum_probs=169.0

Q ss_pred             cCCCCCChhhHHhhcCChhHHHHHHhhcCCCCChhh---------------hHhhhcCchHHHHHHHhcCCCCCCCCCCC
Q psy12891          6 SGKLRETPLHIAARVKDGDRCALMLLKSGAGPNLTN---------------IAARVKDGDRCALMLLKSGAGPNLTTDDG   70 (567)
Q Consensus         6 ~~~~~~t~L~~A~~~g~~~~v~~~L~~~g~~~~~~~---------------~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g   70 (567)
                      ....|.|||.+||++|+.++|..+|...|++|...-               .+|+.-++.++|++|+++|+++|......
T Consensus        38 ~~~~g~tPL~iaaRnGH~~vVeyLle~~~a~~e~~GsV~FDge~IegappLWaAsaAGHl~vVk~L~~~ga~VN~tT~TN  117 (615)
T KOG0508|consen   38 EVQNGGTPLLIAARNGHADVVEYLLEHCRASPEQGGSVRFDGETIEGAPPLWAASAAGHLEVVKLLLRRGASVNDTTRTN  117 (615)
T ss_pred             cccCCCCceeeehhcCcHHHHHHHHHHhcCCccCCceEEeCCcccCCCchhhHHhccCcHHHHHHHHHhcCccccccccC
Confidence            456788999999999999977777776888877442               57888899999999999999999999999


Q ss_pred             ChHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCChhHHHHhcCchhHHHHHHHhhhhhhhhHHhhhhcccccccccHHH
Q psy12891         71 QTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVVDLLIQFVQNISQEKVLEYVNSVNEDGASALH  150 (567)
Q Consensus        71 ~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~t~L~  150 (567)
                      .|||--||..|++++||||+++|+|++..|+.|.|.||+|+..||.+|+++|++.|++         +|.++..|+|+||
T Consensus       118 StPLraACfDG~leivKyLvE~gad~~IanrhGhTcLmIa~ykGh~~I~qyLle~gAD---------vn~ks~kGNTALH  188 (615)
T KOG0508|consen  118 STPLRAACFDGHLEIVKYLVEHGADPEIANRHGHTCLMIACYKGHVDIAQYLLEQGAD---------VNAKSYKGNTALH  188 (615)
T ss_pred             CccHHHHHhcchhHHHHHHHHcCCCCcccccCCCeeEEeeeccCchHHHHHHHHhCCC---------cchhcccCchHHH
Confidence            9999999999999999999999999999999999999999999999999999999999         8999999999999


Q ss_pred             HHHHhCCcccccccccccHHHHHHHHHcCCCccccccCCCccHHHHHHhcCCHHHHHHHHHhc
Q psy12891        151 YACQVTKAELIPITSKEDQKTVKLLLEAGADVSLQTKQNHETAFHYCAVAGNNDVLTGMLEQM  213 (567)
Q Consensus       151 ~a~~~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~  213 (567)
                      .+++           .++.+++++|+.+|+.+...  ..|.|||..|+..|..+++++|++..
T Consensus       189 ~caE-----------sG~vdivq~Ll~~ga~i~~d--~~GmtPL~~Aa~tG~~~iVe~L~~~~  238 (615)
T KOG0508|consen  189 DCAE-----------SGSVDIVQLLLKHGAKIDVD--GHGMTPLLLAAVTGHTDIVERLLQCE  238 (615)
T ss_pred             hhhh-----------cccHHHHHHHHhCCceeeec--CCCCchHHHHhhhcchHHHHHHhcCC
Confidence            9998           55677899999999988643  33799999999999999999999743

>PHA02792 ankyrin-like protein; Provisional

Probab=100.00  E-value=2.8e-38  Score=299.30  Aligned_cols=372  Identities=12%  Similarity=0.061  Sum_probs=210.4

Q ss_pred             HHHHHhcCCCCCCCCCCCChHHHHH-HHhCCHHHHHHHHHcCCCCCCCCCCCCChhHHHHh-cCchhHHHHHHHhhhhhh
Q psy12891         53 ALMLLKSGAGPNLTTDDGQTPVHAA-AKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASR-NCKAEVVDLLIQFVQNIS  130 (567)
Q Consensus        53 ~~~Ll~~g~~~~~~~~~g~t~L~~A-~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~-~~~~~iv~~Ll~~~~~~~  130 (567)
                      ++.++.-|.+++..+.+|.+++|+- ...|++++|++|+++||++|.++..+.+|+++|+. .++.|++++|++.|++..
T Consensus        54 ~~~~~~~~~~~~~~n~~~~~~~~~~~s~n~~lElvk~LI~~GAdvN~~~n~~~~~l~ya~~~~~~~eivk~Ll~~Gad~~  133 (631)
T PHA02792         54 NDVVILLLSSVDYKNINDFDIFEYLCSDNIDIELLKLLISKGLEINSIKNGINIVEKYATTSNPNVDVFKLLLDKGIPTC  133 (631)
T ss_pred             HHHHHHHHhCCCcCccCCccHHHHHHHhcccHHHHHHHHHcCCCcccccCCCCcceeEeecCCCChHHHHHHHHCCCCcc
Confidence            3444444555555555555555533 23445555555555555555555555555555533 355555555555555421


Q ss_pred             hh---------------------------HHhhhhcccccccccHHHHHHHhCCcccccccccccHHHHHHHHHcCCCcc
Q psy12891        131 QE---------------------------KVLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGADVS  183 (567)
Q Consensus       131 ~~---------------------------~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~  183 (567)
                      ..                           +-...++..+..|.||||+|+..+..+-    ...++++++.|+++|++++
T Consensus       134 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~~i~~~s~~~----~~~~~~v~k~Li~~g~~~~  209 (631)
T PHA02792        134 SNIQYGYKIIIEQITRAEYYNWDDELDDYDYDYTTDYDDRMGKTVLYYYIITRSQDG----YATSLDVINYLISHEKEMR  209 (631)
T ss_pred             cccccCcchhhhhcccccccchhhhccccccccccccCCCCCCchHHHHHhhCCccc----ccCCHHHHHHHHhCCCCcC
Confidence            10                           0001246778889999999998652110    0116888999999999998


Q ss_pred             ccccCCCccHHHHHHhcC--CHHHHHHHHHhccCcchhhhhhcCCCCCChHHHHHHh--c------CcHHHHHHHHhCCC
Q psy12891        184 LQTKQNHETAFHYCAVAG--NNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIACN--R------GHMELVNTMLNNHA  253 (567)
Q Consensus       184 ~~~~~~~~~~l~~a~~~~--~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~L~~A~~--~------~~~~~v~~Ll~~g~  253 (567)
                      ..+.. |.||||+|+.+.  +.|+++.|++....-          ......|..-..  .      =+..+|..|++.+-
T Consensus       210 ~~d~~-g~t~l~~~~~~~~i~~ei~~~L~~~~~~~----------~~~~~~l~~y~~~~~~~~~~~id~~iv~~ll~~~~  278 (631)
T PHA02792        210 YYTYR-EHTTLYYYVDKCDIKREIFDALFDSNYSG----------NELMNILSNYLRKQYRNKNHKIDNYIVDKLLSGHD  278 (631)
T ss_pred             ccCCC-CChHHHHHHHcccchHHHHHHHHhccccc----------cchHhHHHHHHHHHhccCccCccHHHHHHHHhCCC
Confidence            87664 699999999999  889999998742110          111122222111  1      13447888887654


Q ss_pred             CCCccCCCCCCHHHHHHHcCCeeeeccccccccccccCCCCCCCCCCCccccchhhhhhhhhhcCCCHHHHHHHcC--cH
Q psy12891        254 RVDVFDQEGRSALHLAAEHGYLKVSSGKSLKHSVMSFRLPPHNIIPNGFLVHDHAAVIDILTLRKQTPLHLAAEAG--QL  331 (567)
Q Consensus       254 ~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~L~~a~~~~--~~  331 (567)
                      ......        ........+...                       .+....      +..-+..|+.-..++  +.
T Consensus       279 ~~~i~~--------~~~~~~~~~~~~-----------------------~~~~~~------~~~~q~~l~~Yl~~~~v~i  321 (631)
T PHA02792        279 TFYILE--------LCNSLRNNIIIS-----------------------SILKRY------TDSIQDLLSEYVSYHTVYI  321 (631)
T ss_pred             ccchhh--------hhhhhhhhhHHH-----------------------HHHHHH------hHHHHHHHHHHHhcCCccH
Confidence            222110        000000000000                       000000      000011233333333  45


Q ss_pred             HHHHHHHHcCCCCCCcCcCCCCHHHHHHHcCCHHHHHHHHHhCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCc
Q psy12891        332 QVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIEELMKFDRSG  411 (567)
Q Consensus       332 ~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~  411 (567)
                      +++++|+++|++...  .                                  ....+++.|+..++.+++++|+++|++.
T Consensus       322 eiIK~LId~Ga~~~r--~----------------------------------~~~n~~~~Aa~~gn~eIVelLIs~GADI  365 (631)
T PHA02792        322 NVIKCMIDEGATLYR--F----------------------------------KHINKYFQKFDNRDPKVVEYILKNGNVV  365 (631)
T ss_pred             HHHHHHHHCCCcccc--C----------------------------------CcchHHHHHHHcCCHHHHHHHHHcCCch
Confidence            556666666655431  1                                  1223344555555555555555554442


Q ss_pred             ccccCCCCCCCCHHHHHHHcCcH---HHHHHHHHcCCCCCCccCcCCcHHHHHHHcCcHHHHHHHHhcccccccccccCC
Q psy12891        412 VISARNRVTEATPLQLAAEGGHA---NVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLGV  488 (567)
Q Consensus       412 ~~~~~~~~~~~t~L~~A~~~~~~---~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~  488 (567)
                      ..... ...+.||||+|+.....   +++++|+++|+++|.+|..|+||||+|+..++.+++++|+++|++++.+|..|.
T Consensus       366 N~kD~-~g~~~TpLh~A~~n~~~~v~~IlklLIs~GADIN~kD~~G~TPLh~Aa~~~n~eivelLLs~GADIN~kD~~G~  444 (631)
T PHA02792        366 VEDDD-NIINIMPLFPTLSIHESDVLSILKLCKPYIDDINKIDKHGRSILYYCIESHSVSLVEWLIDNGADINITTKYGS  444 (631)
T ss_pred             hhhcC-CCCChhHHHHHHHhccHhHHHHHHHHHhcCCccccccccCcchHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCC
Confidence            21111 11234677766555443   467888889999998888899999999999999999999999998888888899


Q ss_pred             cHHHHHHH--cC--------CHHHHHHHHhcCCCC
Q psy12891        489 TALHVAAY--FG--------QADTVRELLSHVPGT  513 (567)
Q Consensus       489 t~l~~A~~--~~--------~~~~~~~Ll~~~~~~  513 (567)
                      |||++|+.  .+        ..++++.|++++|..
T Consensus       445 TpL~~A~~~~~~~~~~i~~~~~~il~lLLs~~p~i  479 (631)
T PHA02792        445 TCIGICVILAHACIPEIAELYIKILEIILSKLPTI  479 (631)
T ss_pred             CHHHHHHHHHhcccHHHHHHHHHHHHHHHhcCCCh
Confidence            99998875  22        256788888887654

>PHA02791 ankyrin-like protein; Provisional

Probab=100.00  E-value=5.2e-38  Score=277.37  Aligned_cols=236  Identities=18%  Similarity=0.206  Sum_probs=199.9

Q ss_pred             CCHHHHHHHHHhccCcchhhhhhcCCCCCChHHHHHHhcCcHHHHHHHHhCCCCCCccCCCCCCHHHHHHHcCCeeeecc
Q psy12891        201 GNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVSSG  280 (567)
Q Consensus       201 ~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~  280 (567)
                      ++.+++++|+++++        +.++..|.||||+|+..|+.+++++|++.|++++..+                     
T Consensus        10 ~~~~~~~~Lis~~a--------~~~D~~G~TpLh~Aa~~g~~eiv~~Ll~~ga~~n~~d---------------------   60 (284)
T PHA02791         10 KSKQLKSFLSSKDA--------FKADVHGHSALYYAIADNNVRLVCTLLNAGALKNLLE---------------------   60 (284)
T ss_pred             CHHHHHHHHHhCCC--------CCCCCCCCcHHHHHHHcCCHHHHHHHHHCcCCCcCCC---------------------
Confidence            56677777777654        3467788999999999999999999999888765432                     


Q ss_pred             ccccccccccCCCCCCCCCCCccccchhhhhhhhhhcCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCcCCCCHHHHHHH
Q psy12891        281 KSLKHSVMSFRLPPHNIIPNGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQ  360 (567)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~  360 (567)
                                                           +.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+.
T Consensus        61 -------------------------------------~~TpLh~Aa~~g~~eiV~lLL~~Gadvn~~d~~G~TpLh~Aa~  103 (284)
T PHA02791         61 -------------------------------------NEFPLHQAATLEDTKIVKILLFSGMDDSQFDDKGNTALYYAVD  103 (284)
T ss_pred             -------------------------------------CCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHH
Confidence                                                 3477777888889999999999999999999999999999999


Q ss_pred             cCCHHHHHHHHHhCCCCccccCCCCC-cHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCCCCHHHHHHHcCcHHHHHH
Q psy12891        361 NNFPEVAQIFLRAHPSLVTATTKDGN-TCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRV  439 (567)
Q Consensus       361 ~~~~~~~~~Ll~~~~~~~~~~~~~~~-~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~  439 (567)
                      .++.+++++|++.+++ ++..+..|+ ||||+|+..++.+++++|++.+....    ....|.||||+|++.|+.+++++
T Consensus       104 ~g~~eivk~Ll~~gad-in~~~~~g~~TpL~~Aa~~g~~eivk~LL~~~~~~~----d~~~g~TpLh~Aa~~g~~eiv~l  178 (284)
T PHA02791        104 SGNMQTVKLFVKKNWR-LMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTF----DLAILLSCIHITIKNGHVDMMIL  178 (284)
T ss_pred             cCCHHHHHHHHHCCCC-cCccCCCCCcHHHHHHHHcCCHHHHHHHHhcCCccc----ccccCccHHHHHHHcCCHHHHHH
Confidence            9999999999998877 466677774 89999999999999999998754321    11247899999999999999999


Q ss_pred             HHHcCCCCCCccCcCCcH-HHHHHHcCcHHHHHHHHhcccccccccccCCcHHHHHHHcCCHHHHHHHHhcCCCCC
Q psy12891        440 LVKAGASCTDENKTGFTA-VHLAAQNGHNQVLEEMRSSKALNVYSKKLGVTALHVAAYFGQADTVRELLSHVPGTV  514 (567)
Q Consensus       440 Ll~~g~~~~~~~~~g~t~-l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~  514 (567)
                      |+++|++++.++..|.|| ||+|+..|+.+++++|+++|++++.+|..| ++|      ++.|++++|+++..+..
T Consensus       179 LL~~gAd~n~~d~~g~t~~L~~Aa~~~~~e~v~lLl~~Ga~in~~~~~~-~~l------~~~e~~~~ll~~~~~~~  247 (284)
T PHA02791        179 LLDYMTSTNTNNSLLFIPDIKLAIDNKDLEMLQALFKYDINIYSVNLEN-VLL------DDAEIAKMIIEKHVEYK  247 (284)
T ss_pred             HHHCCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCccCcccC-ccC------CCHHHHHHHHHhhhhhc
Confidence            999999999999999987 999999999999999999999999998854 555      89999999999866543

>PHA02875 ankyrin repeat protein; Provisional

Probab=100.00  E-value=3.1e-37  Score=297.42  Aligned_cols=229  Identities=23%  Similarity=0.275  Sum_probs=210.2

Q ss_pred             CCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCcCCCCHHHHHHHcCCHHHHHHHHHhCCCCccccCCCCCcHHHHHHHcCC
Q psy12891        318 KQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGS  397 (567)
Q Consensus       318 ~~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~  397 (567)
                      .+++|+.|+..|+.+++++|+++|++++..+..|.||||+|+..++.+++++|++.++. .+..+..+.+|||.|+..|+
T Consensus         2 ~~~~L~~A~~~g~~~iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~~~t~L~~A~~~g~   80 (413)
T PHA02875          2 DQVALCDAILFGELDIARRLLDIGINPNFEIYDGISPIKLAMKFRDSEAIKLLMKHGAI-PDVKYPDIESELHDAVEEGD   80 (413)
T ss_pred             CchHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCC-ccccCCCcccHHHHHHHCCC
Confidence            46899999999999999999999999999999999999999999999999999999876 56667889999999999999


Q ss_pred             HHHHHHHHhcCCCcccccCCCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCccCcCCcHHHHHHHcCcHHHHHHHHhcc
Q psy12891        398 VGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSK  477 (567)
Q Consensus       398 ~~~~~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~  477 (567)
                      .+++++|++.+...  ....+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|+++|
T Consensus        81 ~~~v~~Ll~~~~~~--~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~g  158 (413)
T PHA02875         81 VKAVEELLDLGKFA--DDVFYKDGMTPLHLATILKKLDIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLIDHK  158 (413)
T ss_pred             HHHHHHHHHcCCcc--cccccCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcC
Confidence            99999999987653  2333446899999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccccccCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcccccccCCCCC-CCHHHHHHHcCCHHHHHHHHhcc
Q psy12891        478 ALNVYSKKLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESG-MTPLHLAAYSGNENVVRLLLNSA  556 (567)
Q Consensus       478 ~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~g-~t~l~~A~~~~~~~~v~~Ll~~~  556 (567)
                      ++++.+|..|+||||+|+..|+.+++++|++++++..             ..+..| .||+++|+..|+.++|++|+++ 
T Consensus       159 ~~~~~~d~~g~TpL~~A~~~g~~eiv~~Ll~~ga~~n-------------~~~~~~~~t~l~~A~~~~~~~iv~~Ll~~-  224 (413)
T PHA02875        159 ACLDIEDCCGCTPLIIAMAKGDIAICKMLLDSGANID-------------YFGKNGCVAALCYAIENNKIDIVRLFIKR-  224 (413)
T ss_pred             CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCC-------------cCCCCCCchHHHHHHHcCCHHHHHHHHHC-
Confidence            9999999999999999999999999999999988763             334455 5799999999999999999996 


Q ss_pred             CCccccc
Q psy12891        557 GVQVDAQ  563 (567)
Q Consensus       557 g~~~~~~  563 (567)
                      |+|+|+.
T Consensus       225 gad~n~~  231 (413)
T PHA02875        225 GADCNIM  231 (413)
T ss_pred             CcCcchH
Confidence            9999976

>KOG4412|consensus

Probab=100.00  E-value=5.9e-38  Score=238.45  Aligned_cols=201  Identities=27%  Similarity=0.335  Sum_probs=163.4

Q ss_pred             CCCHHHHHHHcCCHHHHHHHHHhCCCCccccCC-CCCcHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCCCCHHHHHH
Q psy12891        351 GQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTK-DGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAA  429 (567)
Q Consensus       351 g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~-~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~t~L~~A~  429 (567)
                      +.++.+.+++.....-++.+.+..+..++.++. +|+||||+||+-|+.+++++|++. . ....+..+..|+||||.|+
T Consensus         3 ~~~~~~~~~~~~~~~kveel~~s~~kSL~~r~dqD~Rt~LHwa~S~g~~eiv~fLlsq-~-nv~~ddkDdaGWtPlhia~   80 (226)
T KOG4412|consen    3 YASLGKAICENCEEFKVEELIQSDPKSLNARDDQDGRTPLHWACSFGHVEIVYFLLSQ-P-NVKPDDKDDAGWTPLHIAA   80 (226)
T ss_pred             ccchHHHHHhhchHHHHHHHHhcChhhhhccccccCCceeeeeeecCchhHHHHHHhc-C-CCCCCCccccCCchhhhhh
Confidence            345666777777777777777776644555555 888888888888888888888872 2 2233444668889999999


Q ss_pred             HcCcHHHHHHHHHc-CCCCCCccCcCCcHHHHHHHcCcHHHHHHHHhcccccccccccCCcHHHHHHHcCCHHHHHHHHh
Q psy12891        430 EGGHANVVRVLVKA-GASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLGVTALHVAAYFGQADTVRELLS  508 (567)
Q Consensus       430 ~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~  508 (567)
                      ..|+.++|+.|+.+ |+|+|.++..|.|+||+|+..|+.+|+++|+++|+.++.+|..|.||||.|+.-|+.+++++|+.
T Consensus        81 s~g~~evVk~Ll~r~~advna~tn~G~T~LHyAagK~r~eIaqlLle~ga~i~~kD~~~qtplHRAAavGklkvie~Li~  160 (226)
T KOG4412|consen   81 SNGNDEVVKELLNRSGADVNATTNGGQTCLHYAAGKGRLEIAQLLLEKGALIRIKDKQGQTPLHRAAAVGKLKVIEYLIS  160 (226)
T ss_pred             hcCcHHHHHHHhcCCCCCcceecCCCcceehhhhcCChhhHHHHHHhcCCCCcccccccCchhHHHHhccchhhHHHHHh
Confidence            99999999988887 89999988899999999999999999999999999888899999999999999999999999988


Q ss_pred             cCCCCCCCCCCCCcccccccCCCCCCCHHHHHHHcCCHHHHHHHHhccCCccccccccC
Q psy12891        509 HVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVRLLLNSAGVQVDAQTQEN  567 (567)
Q Consensus       509 ~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~g~~~~~~~~~~  567 (567)
                      .++..             +..|+.|.||||.|.-.|+.++..+|+++ |+|++.+|+||
T Consensus       161 ~~a~~-------------n~qDk~G~TpL~~al~e~~~d~a~lLV~~-gAd~~~edke~  205 (226)
T KOG4412|consen  161 QGAPL-------------NTQDKYGFTPLHHALAEGHPDVAVLLVRA-GADTDREDKEG  205 (226)
T ss_pred             cCCCC-------------CcccccCccHHHHHHhccCchHHHHHHHh-ccceeeccccC
Confidence            87543             56688899999999888899999888886 89999888886

>PHA02875 ankyrin repeat protein; Provisional

Probab=100.00  E-value=5.5e-36  Score=288.79  Aligned_cols=256  Identities=20%  Similarity=0.167  Sum_probs=219.0

Q ss_pred             CChHHHHHHhcCcHHHHHHHHhCCCCCCccCCCCCCHHHHHHHcCCeeeeccccccccccccCCCCCCCCCCCccccchh
Q psy12891        229 GWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVSSGKSLKHSVMSFRLPPHNIIPNGFLVHDHA  308 (567)
Q Consensus       229 ~~~~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~  308 (567)
                      ..++|+.|+..|+.+++++|+++|++++..+..|.                                             
T Consensus         2 ~~~~L~~A~~~g~~~iv~~Ll~~g~~~n~~~~~g~---------------------------------------------   36 (413)
T PHA02875          2 DQVALCDAILFGELDIARRLLDIGINPNFEIYDGI---------------------------------------------   36 (413)
T ss_pred             CchHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCC---------------------------------------------
Confidence            46889999999999999999999998887665544                                             


Q ss_pred             hhhhhhhhcCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCcCCCCHHHHHHHcCCHHHHHHHHHhCCCCccccCCCCCcH
Q psy12891        309 AVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTC  388 (567)
Q Consensus       309 ~~~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~  388 (567)
                                 ||||+|+..|+.+++++|+++|++++..+..+.||||.|+..|+.+++++|++.+.......+..|.||
T Consensus        37 -----------tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tp  105 (413)
T PHA02875         37 -----------SPIKLAMKFRDSEAIKLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVEELLDLGKFADDVFYKDGMTP  105 (413)
T ss_pred             -----------CHHHHHHHcCCHHHHHHHHhCCCCccccCCCcccHHHHHHHCCCHHHHHHHHHcCCcccccccCCCCCH
Confidence                       555566667788999999999999998888899999999999999999999998887666677789999


Q ss_pred             HHHHHHcCCHHHHHHHHhcCCCcccccCCCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCccCcCCcHHHHHHHcCcHH
Q psy12891        389 AHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQ  468 (567)
Q Consensus       389 l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~  468 (567)
                      ||+|+..++.+++++|++.|++..   ..+..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+
T Consensus       106 L~~A~~~~~~~iv~~Ll~~gad~~---~~~~~g~tpLh~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~TpL~~A~~~g~~e  182 (413)
T PHA02875        106 LHLATILKKLDIMKLLIARGADPD---IPNTDKFSPLHLAVMMGDIKGIELLIDHKACLDIEDCCGCTPLIIAMAKGDIA  182 (413)
T ss_pred             HHHHHHhCCHHHHHHHHhCCCCCC---CCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHH
Confidence            999999999999999999887643   33447899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcccccccccccCC-cHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcccccccCCCCCCCHHHHHHH---cC
Q psy12891        469 VLEEMRSSKALNVYSKKLGV-TALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAY---SG  544 (567)
Q Consensus       469 ~v~~Ll~~~~~~~~~~~~g~-t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~---~~  544 (567)
                      ++++|++.|++++..+..|. ||+|+|+..++.+++++|++++++....          ...+..+.||++.+..   +.
T Consensus       183 iv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~iv~~Ll~~gad~n~~----------~~~~~~~~t~l~~~~~~~~~~  252 (413)
T PHA02875        183 ICKMLLDSGANIDYFGKNGCVAALCYAIENNKIDIVRLFIKRGADCNIM----------FMIEGEECTILDMICNMCTNL  252 (413)
T ss_pred             HHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHHHHHHHHHCCcCcchH----------hhcCCCchHHHHHHHhhcCCc
Confidence            99999999999998887774 7899999999999999999998876321          2235678899987754   34


Q ss_pred             CHHHHHHHH
Q psy12891        545 NENVVRLLL  553 (567)
Q Consensus       545 ~~~~v~~Ll  553 (567)
                      ..++++.|+
T Consensus       253 ~~~~~~~li  261 (413)
T PHA02875        253 ESEAIDALI  261 (413)
T ss_pred             ccHHHHHHH
Confidence            566676666

>PHA02798 ankyrin-like protein; Provisional

Probab=100.00  E-value=5.1e-36  Score=293.45  Aligned_cols=283  Identities=16%  Similarity=0.152  Sum_probs=192.9

Q ss_pred             HHHHHHHHHhccCcchhhhhhcCCCCCChHHHHHHh--cCcHHHHHHHHhCCCCCCccCCCCCCHHHHHHHcCCeeeecc
Q psy12891        203 NDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIACN--RGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVSSG  280 (567)
Q Consensus       203 ~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~L~~A~~--~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~  280 (567)
                      .+.++.|++.+...       .. ..+.|+++.+..  .++.+++++|+++|++++..+..|.|||+.++...       
T Consensus        18 ~~~v~~ll~~~~~~-------~~-~~~~~~~~~yl~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpL~~~~~n~-------   82 (489)
T PHA02798         18 LSTVKLLIKSCNPN-------EI-VNEYSIFQKYLQRDSPSTDIVKLFINLGANVNGLDNEYSTPLCTILSNI-------   82 (489)
T ss_pred             HHHHHHHHhcCChh-------hh-cccchHHHHHHhCCCCCHHHHHHHHHCCCCCCCCCCCCCChHHHHHHhH-------
Confidence            56677777643211       11 235566654433  34788899999999999888888888888775420       


Q ss_pred             ccccccccccCCCCCCCCCCCccccchhhhhhhhhhcCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCcCCCCHHHHHHH
Q psy12891        281 KSLKHSVMSFRLPPHNIIPNGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQ  360 (567)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~  360 (567)
                                                                  +...+..+++++|+++|+|+|..+..|.||||+|+.
T Consensus        83 --------------------------------------------~~~~~~~~iv~~Ll~~GadiN~~d~~G~TpLh~a~~  118 (489)
T PHA02798         83 --------------------------------------------KDYKHMLDIVKILIENGADINKKNSDGETPLYCLLS  118 (489)
T ss_pred             --------------------------------------------HhHHhHHHHHHHHHHCCCCCCCCCCCcCcHHHHHHH
Confidence                                                        111234677777777777777777777777777776


Q ss_pred             cC---CHHHHHHHHHhCCCCccccCCCCCcHHHHHHHcCC---HHHHHHHHhcCCCcccccCCCCCCCCHHHHHHHc---
Q psy12891        361 NN---FPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGS---VGVIEELMKFDRSGVISARNRVTEATPLQLAAEG---  431 (567)
Q Consensus       361 ~~---~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~---~~~~~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~---  431 (567)
                      ++   +.+++++|++++++ ++..+..|.||||+|+..++   .+++++|++.|.+..  ...+..|.||||.++..   
T Consensus       119 ~~~~~~~~iv~~Ll~~Gad-vn~~d~~g~tpL~~a~~~~~~~~~~vv~~Ll~~gadin--~~~~~~~~t~Lh~~~~~~~~  195 (489)
T PHA02798        119 NGYINNLEILLFMIENGAD-TTLLDKDGFTMLQVYLQSNHHIDIEIIKLLLEKGVDIN--THNNKEKYDTLHCYFKYNID  195 (489)
T ss_pred             cCCcChHHHHHHHHHcCCC-ccccCCCCCcHHHHHHHcCCcchHHHHHHHHHhCCCcc--cccCcCCCcHHHHHHHhccc
Confidence            64   56777777777766 56777777777777777766   777777777765532  22233566777777653   


Q ss_pred             -CcHHHHHHHHHcCCCCCCccCcCCcHHH-------HHHHcCcHHHHHHHHhcccccccccccCCcHHHHHHHcCCHHHH
Q psy12891        432 -GHANVVRVLVKAGASCTDENKTGFTAVH-------LAAQNGHNQVLEEMRSSKALNVYSKKLGVTALHVAAYFGQADTV  503 (567)
Q Consensus       432 -~~~~~v~~Ll~~g~~~~~~~~~g~t~l~-------~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~  503 (567)
                       ++.+++++|+++|++++..+..|.++++       .+...+..+++++|+. +++++.+|..|+||||+|+..++.+++
T Consensus       196 ~~~~~ivk~Li~~Ga~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~i~~~l~~-~~dvN~~d~~G~TPL~~A~~~~~~~~v  274 (489)
T PHA02798        196 RIDADILKLFVDNGFIINKENKSHKKKFMEYLNSLLYDNKRFKKNILDFIFS-YIDINQVDELGFNPLYYSVSHNNRKIF  274 (489)
T ss_pred             cCCHHHHHHHHHCCCCcccCCccccchHHHHHHHHHhhcccchHHHHHHHHh-cCCCCCcCcCCccHHHHHHHcCcHHHH
Confidence             3677777777777777777777777765       2334455667776655 477777777777777777777777777


Q ss_pred             HHHHhcCCCCCCCCCCCCcccccccCCCCCCCHHHHHHHcCCHHHHHHHHhccCCcccc
Q psy12891        504 RELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVRLLLNSAGVQVDA  562 (567)
Q Consensus       504 ~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~g~~~~~  562 (567)
                      ++|+++|++.             +..|..|.|||++|+++++.++++.|+++ |++++.
T Consensus       275 ~~LL~~GAdi-------------n~~d~~G~TpL~~A~~~~~~~iv~~lL~~-~~~~~~  319 (489)
T PHA02798        275 EYLLQLGGDI-------------NIITELGNTCLFTAFENESKFIFNSILNK-KPNKNT  319 (489)
T ss_pred             HHHHHcCCcc-------------cccCCCCCcHHHHHHHcCcHHHHHHHHcc-CCCHHH
Confidence            7777776654             55667777777777777777777777775 776664

>KOG0508|consensus

Probab=100.00  E-value=1.6e-35  Score=259.53  Aligned_cols=207  Identities=29%  Similarity=0.402  Sum_probs=175.5

Q ss_pred             HHhhcCChhHHHHHHhhcC---------CCCC--hhhhHhhhcCchHHHHHHHh-cCCCCCCC--------CCCCChHHH
Q psy12891         16 IAARVKDGDRCALMLLKSG---------AGPN--LTNIAARVKDGDRCALMLLK-SGAGPNLT--------TDDGQTPVH   75 (567)
Q Consensus        16 ~A~~~g~~~~v~~~L~~~g---------~~~~--~~~~~a~~~~~~~~~~~Ll~-~g~~~~~~--------~~~g~t~L~   75 (567)
                      -|++.|.....+.+|+++.         ..++  ...+-++..++.++|++|++ .++++...        ..+|-+||.
T Consensus        10 naa~~g~l~~l~~ll~~~s~~ei~~l~~~~~~g~tPL~iaaRnGH~~vVeyLle~~~a~~e~~GsV~FDge~IegappLW   89 (615)
T KOG0508|consen   10 NAARDGKLQLLAKLLINSSNEEIISLIGEVQNGGTPLLIAARNGHADVVEYLLEHCRASPEQGGSVRFDGETIEGAPPLW   89 (615)
T ss_pred             HHhhhhhHHHHHHHHhCCchHHHHHHhccccCCCCceeeehhcCcHHHHHHHHHHhcCCccCCceEEeCCcccCCCchhh
Confidence            5777788887777666632         2222  12256788899999999998 68887654        336779999


Q ss_pred             HHHHhCCHHHHHHHHHcCCCCCCCCCCCCChhHHHHhcCchhHHHHHHHhhhhhhhhHHhhhhcccccccccHHHHHHHh
Q psy12891         76 AAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVVDLLIQFVQNISQEKVLEYVNSVNEDGASALHYACQV  155 (567)
Q Consensus        76 ~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~  155 (567)
                      .|+..|++++||.|+++|+++|.......|||-.||..|+.++|++|+++|++         ++..|+.|.|.|++||. 
T Consensus        90 aAsaAGHl~vVk~L~~~ga~VN~tT~TNStPLraACfDG~leivKyLvE~gad---------~~IanrhGhTcLmIa~y-  159 (615)
T KOG0508|consen   90 AASAAGHLEVVKLLLRRGASVNDTTRTNSTPLRAACFDGHLEIVKYLVEHGAD---------PEIANRHGHTCLMIACY-  159 (615)
T ss_pred             HHhccCcHHHHHHHHHhcCccccccccCCccHHHHHhcchhHHHHHHHHcCCC---------CcccccCCCeeEEeeec-
Confidence            99999999999999999999998888888999999999999999999999998         68889999999999998 


Q ss_pred             CCcccccccccccHHHHHHHHHcCCCccccccCCCccHHHHHHhcCCHHHHHHHHHhccCcchhhhhhcCCCCCChHHHH
Q psy12891        156 TKAELIPITSKEDQKTVKLLLEAGADVSLQTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLI  235 (567)
Q Consensus       156 ~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~L~~  235 (567)
                                +++.+|+++|++.|+|++..+.. |.|+||.++.+|+.++++.|+.++...       ..+..|.|||..
T Consensus       160 ----------kGh~~I~qyLle~gADvn~ks~k-GNTALH~caEsG~vdivq~Ll~~ga~i-------~~d~~GmtPL~~  221 (615)
T KOG0508|consen  160 ----------KGHVDIAQYLLEQGADVNAKSYK-GNTALHDCAESGSVDIVQLLLKHGAKI-------DVDGHGMTPLLL  221 (615)
T ss_pred             ----------cCchHHHHHHHHhCCCcchhccc-CchHHHhhhhcccHHHHHHHHhCCcee-------eecCCCCchHHH
Confidence                      56777899999999999977655 599999999999999999999987754       356679999999


Q ss_pred             HHhcCcHHHHHHHHh
Q psy12891        236 ACNRGHMELVNTMLN  250 (567)
Q Consensus       236 A~~~~~~~~v~~Ll~  250 (567)
                      |...|+.++|.+|++
T Consensus       222 Aa~tG~~~iVe~L~~  236 (615)
T KOG0508|consen  222 AAVTGHTDIVERLLQ  236 (615)
T ss_pred             HhhhcchHHHHHHhc
Confidence            999999999999996

>PHA02798 ankyrin-like protein; Provisional

Probab=100.00  E-value=1.1e-34  Score=283.96  Aligned_cols=283  Identities=15%  Similarity=0.177  Sum_probs=220.8

Q ss_pred             cccHHHHHHHHHcCCCccccccCCCccHHHHHH--hcCCHHHHHHHHHhccCcchhhhhhcCCCCCChHHHHHHhc----
Q psy12891        166 KEDQKTVKLLLEAGADVSLQTKQNHETAFHYCA--VAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIACNR----  239 (567)
Q Consensus       166 ~~~~~~v~~Ll~~g~~~~~~~~~~~~~~l~~a~--~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~L~~A~~~----  239 (567)
                      .-..++|++|++.+. ++...  .+.++++...  ..++.+++++|+++|++.      +..+..|.||||.++..    
T Consensus        15 ~~~~~~v~~ll~~~~-~~~~~--~~~~~~~~yl~~~~~~~~iv~~Ll~~Gadv------n~~d~~g~TpL~~~~~n~~~~   85 (489)
T PHA02798         15 NVKLSTVKLLIKSCN-PNEIV--NEYSIFQKYLQRDSPSTDIVKLFINLGANV------NGLDNEYSTPLCTILSNIKDY   85 (489)
T ss_pred             cccHHHHHHHHhcCC-hhhhc--ccchHHHHHHhCCCCCHHHHHHHHHCCCCC------CCCCCCCCChHHHHHHhHHhH
Confidence            457789999998753 43332  2356666443  344799999999998764      67889999999998864    


Q ss_pred             -CcHHHHHHHHhCCCCCCccCCCCCCHHHHHHHcCCeeeeccccccccccccCCCCCCCCCCCccccchhhhhhhhhhcC
Q psy12891        240 -GHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVSSGKSLKHSVMSFRLPPHNIIPNGFLVHDHAAVIDILTLRK  318 (567)
Q Consensus       240 -~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~  318 (567)
                       +..+++++|+++|++++..+..|.||||+|+..+.                                            
T Consensus        86 ~~~~~iv~~Ll~~GadiN~~d~~G~TpLh~a~~~~~--------------------------------------------  121 (489)
T PHA02798         86 KHMLDIVKILIENGADINKKNSDGETPLYCLLSNGY--------------------------------------------  121 (489)
T ss_pred             HhHHHHHHHHHHCCCCCCCCCCCcCcHHHHHHHcCC--------------------------------------------
Confidence             67899999999999999999999988888877642                                            


Q ss_pred             CCHHHHHHHcCcHHHHHHHHHcCCCCCCcCcCCCCHHHHHHHcCC---HHHHHHHHHhCCCCccccCCCCCcHHHHHHHc
Q psy12891        319 QTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNF---PEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQ  395 (567)
Q Consensus       319 ~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~---~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~  395 (567)
                               .++.+++++|+++|++++..|..|.||||+|++.++   .+++++|++.+.+.....+..|.||+|.++..
T Consensus       122 ---------~~~~~iv~~Ll~~Gadvn~~d~~g~tpL~~a~~~~~~~~~~vv~~Ll~~gadin~~~~~~~~t~Lh~~~~~  192 (489)
T PHA02798        122 ---------INNLEILLFMIENGADTTLLDKDGFTMLQVYLQSNHHIDIEIIKLLLEKGVDINTHNNKEKYDTLHCYFKY  192 (489)
T ss_pred             ---------cChHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCCcchHHHHHHHHHhCCCcccccCcCCCcHHHHHHHh
Confidence                     135788888888888888888888888888888876   88888888887774333345678888877654


Q ss_pred             ----CCHHHHHHHHhcCCCcccccCCCCCCCCHHH-------HHHHcCcHHHHHHHHHcCCCCCCccCcCCcHHHHHHHc
Q psy12891        396 ----GSVGVIEELMKFDRSGVISARNRVTEATPLQ-------LAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQN  464 (567)
Q Consensus       396 ----~~~~~~~~ll~~~~~~~~~~~~~~~~~t~L~-------~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~  464 (567)
                          ++.+++++|+++|.....   .+..+.++++       .+...+..+++++|+. |+|+|.+|..|+||||+|+..
T Consensus       193 ~~~~~~~~ivk~Li~~Ga~i~~---~~~~~~~~~~~~l~~l~~~~~~~~~~i~~~l~~-~~dvN~~d~~G~TPL~~A~~~  268 (489)
T PHA02798        193 NIDRIDADILKLFVDNGFIINK---ENKSHKKKFMEYLNSLLYDNKRFKKNILDFIFS-YIDINQVDELGFNPLYYSVSH  268 (489)
T ss_pred             ccccCCHHHHHHHHHCCCCccc---CCccccchHHHHHHHHHhhcccchHHHHHHHHh-cCCCCCcCcCCccHHHHHHHc
Confidence                478888888888765332   2334556655       2344566778877665 589999999999999999999


Q ss_pred             CcHHHHHHHHhcccccccccccCCcHHHHHHHcCCHHHHHHHHhcCCCCC
Q psy12891        465 GHNQVLEEMRSSKALNVYSKKLGVTALHVAAYFGQADTVRELLSHVPGTV  514 (567)
Q Consensus       465 ~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~  514 (567)
                      |+.+++++|++.|++++.+|..|+|||++|+..++.++++.|++++++..
T Consensus       269 ~~~~~v~~LL~~GAdin~~d~~G~TpL~~A~~~~~~~iv~~lL~~~~~~~  318 (489)
T PHA02798        269 NNRKIFEYLLQLGGDINIITELGNTCLFTAFENESKFIFNSILNKKPNKN  318 (489)
T ss_pred             CcHHHHHHHHHcCCcccccCCCCCcHHHHHHHcCcHHHHHHHHccCCCHH
Confidence            99999999999999999999999999999999999999999998877653

>KOG4412|consensus

Probab=100.00  E-value=3e-35  Score=223.77  Aligned_cols=215  Identities=26%  Similarity=0.268  Sum_probs=177.5

Q ss_pred             CCHHHHHHHcCcHHHHHHHHHcCC-CCCCcCc-CCCCHHHHHHHcCCHHHHHHHHHhCCCCccccCCCCCcHHHHHHHcC
Q psy12891        319 QTPLHLAAEAGQLQVCKLLLDLGA-SIDATDD-QGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQG  396 (567)
Q Consensus       319 ~t~L~~a~~~~~~~~v~~Ll~~g~-~~~~~~~-~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~  396 (567)
                      .++.+.+++.....-++-+++... +.+.++. +|+||||.||..|+.+++.+|++.....++..|..|+||||.|+..|
T Consensus         4 ~~~~~~~~~~~~~~kveel~~s~~kSL~~r~dqD~Rt~LHwa~S~g~~eiv~fLlsq~nv~~ddkDdaGWtPlhia~s~g   83 (226)
T KOG4412|consen    4 ASLGKAICENCEEFKVEELIQSDPKSLNARDDQDGRTPLHWACSFGHVEIVYFLLSQPNVKPDDKDDAGWTPLHIAASNG   83 (226)
T ss_pred             cchHHHHHhhchHHHHHHHHhcChhhhhccccccCCceeeeeeecCchhHHHHHHhcCCCCCCCccccCCchhhhhhhcC
Confidence            456677777776667777776544 5566655 89999999999999999999998766667788899999999999999


Q ss_pred             CHHHHHHHHhc-CCCcccccCCCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCccCcCCcHHHHHHHcCcHHHHHHHHh
Q psy12891        397 SVGVIEELMKF-DRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRS  475 (567)
Q Consensus       397 ~~~~~~~ll~~-~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~  475 (567)
                      +.++|+.|+.. +++   .+.....|.|+||+|+..|+.+++++|+++|+.++.+|..|.||||.|+.-|+++++++|+.
T Consensus        84 ~~evVk~Ll~r~~ad---vna~tn~G~T~LHyAagK~r~eIaqlLle~ga~i~~kD~~~qtplHRAAavGklkvie~Li~  160 (226)
T KOG4412|consen   84 NDEVVKELLNRSGAD---VNATTNGGQTCLHYAAGKGRLEIAQLLLEKGALIRIKDKQGQTPLHRAAAVGKLKVIEYLIS  160 (226)
T ss_pred             cHHHHHHHhcCCCCC---cceecCCCcceehhhhcCChhhHHHHHHhcCCCCcccccccCchhHHHHhccchhhHHHHHh
Confidence            99999999987 333   34444578899999999999999999999999999999999999999999999999999999


Q ss_pred             cccccccccccCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcccccccCCCCCCCHHHHHHHcCCHHHHH
Q psy12891        476 SKALNVYSKKLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVR  550 (567)
Q Consensus       476 ~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~  550 (567)
                      .|+..+..|+.|+||||.|...|+.+....|++++++.             ...|+.| ||+-.|.-.=...+.+
T Consensus       161 ~~a~~n~qDk~G~TpL~~al~e~~~d~a~lLV~~gAd~-------------~~edke~-t~~~~a~~~l~~alk~  221 (226)
T KOG4412|consen  161 QGAPLNTQDKYGFTPLHHALAEGHPDVAVLLVRAGADT-------------DREDKEG-TALRIACNELLEALKE  221 (226)
T ss_pred             cCCCCCcccccCccHHHHHHhccCchHHHHHHHhccce-------------eeccccC-chHHHHHHHHHHHHHH
Confidence            99999999999999999998888999999999998765             4556777 8877776544444444

>KOG0509|consensus

Probab=99.97  E-value=3.9e-31  Score=242.75  Aligned_cols=205  Identities=28%  Similarity=0.359  Sum_probs=186.4

Q ss_pred             hHhhhcCchHHHHHHHhc-CCCCCCCCCCCChHHHHHHHhCCHHHHHHHHHcCCCCCCCC-CCCCChhHHHHhcCchhHH
Q psy12891         42 IAARVKDGDRCALMLLKS-GAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKN-KIGETPLHLASRNCKAEVV  119 (567)
Q Consensus        42 ~~a~~~~~~~~~~~Ll~~-g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~-~~g~t~L~~A~~~~~~~iv  119 (567)
                      +.|++.+..+.++.|++. |.+++..|.+|.|+||+||..++++++++|+++||++|..+ ..+.||||||+++|+..+|
T Consensus        49 v~A~q~G~l~~v~~lve~~g~~v~~~D~~g~tlLHWAAiNNrl~v~r~li~~gadvn~~gG~l~stPLHWAar~G~~~vv  128 (600)
T KOG0509|consen   49 VKATQYGELETVKELVESEGESVNNPDREGVTLLHWAAINNRLDVARYLISHGADVNAIGGVLGSTPLHWAARNGHISVV  128 (600)
T ss_pred             hhHhhcchHHHHHHHHhhcCcCCCCCCcCCccceeHHHHcCcHHHHHHHHHcCCCccccCCCCCCCcchHHHHcCcHHHH
Confidence            578888888999999999 99999999999999999999999999999999999999988 5678999999999999999


Q ss_pred             HHHHHhhhhhhhhHHhhhhcccccccccHHHHHHHhCCcccccccccccHHHHHHHHHcCCCccccccCCCccHHHHHHh
Q psy12891        120 DLLIQFVQNISQEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGADVSLQTKQNHETAFHYCAV  199 (567)
Q Consensus       120 ~~Ll~~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~l~~a~~  199 (567)
                      ++|+++|++         ++.+|.+|.+|+|.|++.++..           +|-+|+.+|++++.++..+ .|||++|+.
T Consensus       129 ~lLlqhGAd---------pt~~D~~G~~~lHla~~~~~~~-----------~vayll~~~~d~d~~D~~g-rTpLmwAay  187 (600)
T KOG0509|consen  129 DLLLQHGAD---------PTLKDKQGLTPLHLAAQFGHTA-----------LVAYLLSKGADIDLRDNNG-RTPLMWAAY  187 (600)
T ss_pred             HHHHHcCCC---------CceecCCCCcHHHHHHHhCchH-----------HHHHHHHhcccCCCcCCCC-CCHHHHHHH
Confidence            999999999         7899999999999999977655           4999999999999877654 999999999


Q ss_pred             cCCHHHHHHHHHhccCcchhhhhhcCCCCCChHHHHHHhcCcHHHHHHHHhCCCCCCccCCCCCCHHHHHHHc
Q psy12891        200 AGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEH  272 (567)
Q Consensus       200 ~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~  272 (567)
                      .|....++.|+..++...     -..+..|.||||+|+..|+..+++++++.|++.+..+.+|.||+..|.+.
T Consensus       188 kg~~~~v~~LL~f~a~~~-----~~d~~~g~TpLHwa~~~gN~~~v~Ll~~g~~~~d~~~~~g~tp~~LA~~~  255 (600)
T KOG0509|consen  188 KGFALFVRRLLKFGASLL-----LTDDNHGNTPLHWAVVGGNLTAVKLLLEGGADLDKTNTNGKTPFDLAQER  255 (600)
T ss_pred             hcccHHHHHHHHhccccc-----ccccccCCchHHHHHhcCCcceEehhhhcCCcccccccCCCCHHHHHHHh
Confidence            999888999999876553     23348899999999999999999988888899999999999999999776

>KOG0509|consensus

Probab=99.97  E-value=4.5e-31  Score=242.34  Aligned_cols=208  Identities=27%  Similarity=0.338  Sum_probs=183.1

Q ss_pred             CCHHHHHHHcCcHHHHHHHHHc-CCCCCCcCcCCCCHHHHHHHcCCHHHHHHHHHhCCCCccccC-CCCCcHHHHHHHcC
Q psy12891        319 QTPLHLAAEAGQLQVCKLLLDL-GASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATT-KDGNTCAHIAAMQG  396 (567)
Q Consensus       319 ~t~L~~a~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~-~~~~~~l~~a~~~~  396 (567)
                      ...+..|+.+|.++-|+.|++. |.+++..|.+|.|+||.|+.+++.+++++|++++++. +... .-+.||||+|+++|
T Consensus        45 ~~~~v~A~q~G~l~~v~~lve~~g~~v~~~D~~g~tlLHWAAiNNrl~v~r~li~~gadv-n~~gG~l~stPLHWAar~G  123 (600)
T KOG0509|consen   45 LDDIVKATQYGELETVKELVESEGESVNNPDREGVTLLHWAAINNRLDVARYLISHGADV-NAIGGVLGSTPLHWAARNG  123 (600)
T ss_pred             hhhhhhHhhcchHHHHHHHHhhcCcCCCCCCcCCccceeHHHHcCcHHHHHHHHHcCCCc-cccCCCCCCCcchHHHHcC
Confidence            4568889999999999999999 9999999999999999999999999999999999984 4444 67889999999999


Q ss_pred             CHHHHHHHHhcCCCcccccCCCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCccCcCCcHHHHHHHcCcHHHHHHHHhc
Q psy12891        397 SVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSS  476 (567)
Q Consensus       397 ~~~~~~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~  476 (567)
                      +..++..|+++|+++..   .+..|.+|||.|++.+++.+|-+|+.+|+++|.+|.+|+||||+|+.+|....+..|+..
T Consensus       124 ~~~vv~lLlqhGAdpt~---~D~~G~~~lHla~~~~~~~~vayll~~~~d~d~~D~~grTpLmwAaykg~~~~v~~LL~f  200 (600)
T KOG0509|consen  124 HISVVDLLLQHGADPTL---KDKQGLTPLHLAAQFGHTALVAYLLSKGADIDLRDNNGRTPLMWAAYKGFALFVRRLLKF  200 (600)
T ss_pred             cHHHHHHHHHcCCCCce---ecCCCCcHHHHHHHhCchHHHHHHHHhcccCCCcCCCCCCHHHHHHHhcccHHHHHHHHh
Confidence            99999999999888544   445889999999999999999999999999999999999999999999988889999999


Q ss_pred             cccccccc-ccCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcccccccCCCCCCCHHHHHHHc
Q psy12891        477 KALNVYSK-KLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYS  543 (567)
Q Consensus       477 ~~~~~~~~-~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~  543 (567)
                      |+.....| ..|.||||.|+..|+.++++.|++.+...             +..|.+|.||+..|.+.
T Consensus       201 ~a~~~~~d~~~g~TpLHwa~~~gN~~~v~Ll~~g~~~~-------------d~~~~~g~tp~~LA~~~  255 (600)
T KOG0509|consen  201 GASLLLTDDNHGNTPLHWAVVGGNLTAVKLLLEGGADL-------------DKTNTNGKTPFDLAQER  255 (600)
T ss_pred             cccccccccccCCchHHHHHhcCCcceEehhhhcCCcc-------------cccccCCCCHHHHHHHh
Confidence            99998887 89999999999999999999444443333             45577899999999877

>PHA02795 ankyrin-like protein; Provisional

Probab=99.97  E-value=3.2e-29  Score=229.33  Aligned_cols=234  Identities=14%  Similarity=0.041  Sum_probs=193.6

Q ss_pred             cccchhhhhhhhhhcCCCHHHHHHHcCcHHHHHHHHHcCCCCC------CcCcCCCCHHHHHHH--cCCHHHHHHHHHhC
Q psy12891        303 LVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASID------ATDDQGQKPIHVAAQ--NNFPEVAQIFLRAH  374 (567)
Q Consensus       303 ll~~~~~~~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~~g~~~~------~~~~~g~t~L~~A~~--~~~~~~~~~Ll~~~  374 (567)
                      ++...+.+++.....+     +|+..+..+++++|+.+|++++      .++..++|+||+++.  .++.+++++|+++|
T Consensus        67 ~~~~~~~~i~~~~~~~-----~~~~~~~k~~~~~l~s~~~~~~~~~~~~~~~~~~~~~L~~~~~n~~n~~eiV~~LI~~G  141 (437)
T PHA02795         67 YFRIHRDNIDQYIVDR-----LFAYITYKDIISALVSKNYMEDIFSIIIKNCNSVQDLLLYYLSNAYVEIDIVDFMVDHG  141 (437)
T ss_pred             HHHHcCcchhhhhhhh-----HHhhcchHHHHHHHHhcccccchhhhhhhccccccHHHHHHHHhcCCCHHHHHHHHHCC
Confidence            4445666777766666     8889999999999999999998      788889999999999  89999999999999


Q ss_pred             CCCccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccCC---CCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcc
Q psy12891        375 PSLVTATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARN---RVTEATPLQLAAEGGHANVVRVLVKAGASCTDEN  451 (567)
Q Consensus       375 ~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~---~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~  451 (567)
                      ++. +.  .++.||+|.|+..++.+++++|+++|.........   +..+.+++|.|...++.+++++|+++|+++|.+|
T Consensus       142 ADI-n~--~~~~t~lh~A~~~~~~eIVk~Lls~Ga~~~n~~~~~l~~~~~~t~l~~a~~~~~~eIve~LIs~GADIN~kD  218 (437)
T PHA02795        142 AVI-YK--IECLNAYFRGICKKESSVVEFILNCGIPDENDVKLDLYKIIQYTRGFLVDEPTVLEIYKLCIPYIEDINQLD  218 (437)
T ss_pred             CCC-CC--CCCCCHHHHHHHcCcHHHHHHHHhcCCcccccccchhhhhhccchhHHHHhcCHHHHHHHHHhCcCCcCcCC
Confidence            984 33  35589999999999999999999998743211111   1347799999999999999999999999999999


Q ss_pred             CcCCcHHHHHHHcCcHHHHHHHHhcccccccccccCCcHHHHHHHcCC--------HHHHHHHHhcCCCCCCCCCCCCcc
Q psy12891        452 KTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLGVTALHVAAYFGQ--------ADTVRELLSHVPGTVKSDPPTGAS  523 (567)
Q Consensus       452 ~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~--------~~~~~~Ll~~~~~~~~~~~~~~~~  523 (567)
                      ..|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+        .+++++|++++++...        
T Consensus       219 ~~G~TpLh~Aa~~g~~eiVelLL~~GAdIN~~d~~G~TpLh~Aa~~g~~~~~~~~~~eIvelLL~~gadI~~--------  290 (437)
T PHA02795        219 AGGRTLLYRAIYAGYIDLVSWLLENGANVNAVMSNGYTCLDVAVDRGSVIARRETHLKILEILLREPLSIDC--------  290 (437)
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCcccccccHHHHHHHHHhCCCCCCc--------
Confidence            999999999999999999999999999999999999999999999984        6999999998775421        


Q ss_pred             cccccCCCCCCCHHHHHHHcCCHHHHHHHHhccCCccccc
Q psy12891        524 FLGELGSESGMTPLHLAAYSGNENVVRLLLNSAGVQVDAQ  563 (567)
Q Consensus       524 ~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~g~~~~~~  563 (567)
                              -+.|.+...  ..+.++++.|+.. ++.++..
T Consensus       291 --------~~~~~~~~~--~~n~~~ik~lI~y-~~~ldy~  319 (437)
T PHA02795        291 --------IKLAILNNT--IENHDVIKLCIKY-FMMVDYS  319 (437)
T ss_pred             --------hhHHhhhcc--cchHHHHHHHHHH-HHhcccc
Confidence                    112222211  1278899999875 6655443

>PHA02795 ankyrin-like protein; Provisional

Probab=99.96  E-value=7.7e-29  Score=226.83  Aligned_cols=208  Identities=13%  Similarity=0.056  Sum_probs=183.7

Q ss_pred             HHHHHHHcCCCCCCcCcCCCCHHHHHHHcCCHHHHHHHHHhCCCCc-----cccCCCCCcHHHHHHH--cCCHHHHHHHH
Q psy12891        333 VCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLV-----TATTKDGNTCAHIAAM--QGSVGVIEELM  405 (567)
Q Consensus       333 ~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~-----~~~~~~~~~~l~~a~~--~~~~~~~~~ll  405 (567)
                      +.++++.+|+++|.....+     +|+..+..+++++|+.++....     -..+..++|+||.++.  .++.+++++|+
T Consensus        64 ~~~~~~~~~~~i~~~~~~~-----~~~~~~~k~~~~~l~s~~~~~~~~~~~~~~~~~~~~~L~~~~~n~~n~~eiV~~LI  138 (437)
T PHA02795         64 LYDYFRIHRDNIDQYIVDR-----LFAYITYKDIISALVSKNYMEDIFSIIIKNCNSVQDLLLYYLSNAYVEIDIVDFMV  138 (437)
T ss_pred             HHHHHHHcCcchhhhhhhh-----HHhhcchHHHHHHHHhcccccchhhhhhhccccccHHHHHHHHhcCCCHHHHHHHH
Confidence            5689999999999888776     8999999999999999998732     1467779999999999  89999999999


Q ss_pred             hcCCCcccccCCCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcc------CcCCcHHHHHHHcCcHHHHHHHHhcccc
Q psy12891        406 KFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDEN------KTGFTAVHLAAQNGHNQVLEEMRSSKAL  479 (567)
Q Consensus       406 ~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~------~~g~t~l~~A~~~~~~~~v~~Ll~~~~~  479 (567)
                      ++|++...     ..+.||||.|+..++.+++++|+++|++.....      ..+.|++|.|...++.+++++|+++|++
T Consensus       139 ~~GADIn~-----~~~~t~lh~A~~~~~~eIVk~Lls~Ga~~~n~~~~~l~~~~~~t~l~~a~~~~~~eIve~LIs~GAD  213 (437)
T PHA02795        139 DHGAVIYK-----IECLNAYFRGICKKESSVVEFILNCGIPDENDVKLDLYKIIQYTRGFLVDEPTVLEIYKLCIPYIED  213 (437)
T ss_pred             HCCCCCCC-----CCCCCHHHHHHHcCcHHHHHHHHhcCCcccccccchhhhhhccchhHHHHhcCHHHHHHHHHhCcCC
Confidence            99998543     144799999999999999999999998543221      3478999999999999999999999999


Q ss_pred             cccccccCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcccccccCCCCCCCHHHHHHHcCC--------HHHHHH
Q psy12891        480 NVYSKKLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGN--------ENVVRL  551 (567)
Q Consensus       480 ~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~--------~~~v~~  551 (567)
                      ++.+|..|+||||+|+..|+.+++++|++++++.             +..|..|.||||+|+..|+        .+++++
T Consensus       214 IN~kD~~G~TpLh~Aa~~g~~eiVelLL~~GAdI-------------N~~d~~G~TpLh~Aa~~g~~~~~~~~~~eIvel  280 (437)
T PHA02795        214 INQLDAGGRTLLYRAIYAGYIDLVSWLLENGANV-------------NAVMSNGYTCLDVAVDRGSVIARRETHLKILEI  280 (437)
T ss_pred             cCcCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-------------CCcCCCCCCHHHHHHHcCCcccccccHHHHHHH
Confidence            9999999999999999999999999999998866             6678999999999999984        699999


Q ss_pred             HHhccCCcccccc
Q psy12891        552 LLNSAGVQVDAQT  564 (567)
Q Consensus       552 Ll~~~g~~~~~~~  564 (567)
                      |+++ |++++...
T Consensus       281 LL~~-gadI~~~~  292 (437)
T PHA02795        281 LLRE-PLSIDCIK  292 (437)
T ss_pred             HHhC-CCCCCchh
Confidence            9986 99998754

>KOG4369|consensus

Probab=99.96  E-value=6.6e-30  Score=245.73  Aligned_cols=326  Identities=20%  Similarity=0.234  Sum_probs=285.3

Q ss_pred             cCCCCCChhhHHhhcCChhHHHHHHhhcCCCCChhhhHhhhcCchHHHHHHHhcCCCCCCCCCCCChHHHHHHHhCCHHH
Q psy12891          6 SGKLRETPLHIAARVKDGDRCALMLLKSGAGPNLTNIAARVKDGDRCALMLLKSGAGPNLTTDDGQTPVHAAAKYGNLVT   85 (567)
Q Consensus         6 ~~~~~~t~L~~A~~~g~~~~v~~~L~~~g~~~~~~~~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~   85 (567)
                      +...-.|+|..||+.|+.|+|                           ++|+.+|+++..+|+.|++||..|+-.||..+
T Consensus       753 Te~n~~t~LT~acaggh~e~v---------------------------ellv~rganiehrdkkgf~plImaatagh~tv  805 (2131)
T KOG4369|consen  753 TEPNIKTNLTSACAGGHREEV---------------------------ELLVVRGANIEHRDKKGFVPLIMAATAGHITV  805 (2131)
T ss_pred             cCccccccccccccCccHHHH---------------------------HHHHHhcccccccccccchhhhhhcccCchHH
Confidence            444556777777777776644                           45889999999999999999999999999999


Q ss_pred             HHHHHHcCCCCCC-CCCCCCChhHHHHhcCchhHHHHHHHhhhhhhhhHHhhhhcccccccccHHHHHHHhCCccccccc
Q psy12891         86 LQLLLEDGGDPMY-KNKIGETPLHLASRNCKAEVVDLLIQFVQNISQEKVLEYVNSVNEDGASALHYACQVTKAELIPIT  164 (567)
Q Consensus        86 v~~Ll~~ga~~~~-~~~~g~t~L~~A~~~~~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~  164 (567)
                      |+.|+++-+++.. .|+.+.|+|.+||..|+.++|++||..|++         -..++-...|||..|..          
T Consensus       806 V~~llk~ha~veaQsdrtkdt~lSlacsggr~~vvelLl~~gan---------kehrnvsDytPlsla~S----------  866 (2131)
T KOG4369|consen  806 VQDLLKAHADVEAQSDRTKDTMLSLACSGGRTRVVELLLNAGAN---------KEHRNVSDYTPLSLARS----------  866 (2131)
T ss_pred             HHHHHhhhhhhhhhcccccCceEEEecCCCcchHHHHHHHhhcc---------ccccchhhcCchhhhcC----------
Confidence            9999999999874 577889999999999999999999999988         46677888999999986          


Q ss_pred             ccccHHHHHHHHHcCCCccccccC-CCccHHHHHHhcCCHHHHHHHHHhccCcchhhhhhcCCCCCChHHHHHHhcCcHH
Q psy12891        165 SKEDQKTVKLLLEAGADVSLQTKQ-NHETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIACNRGHME  243 (567)
Q Consensus       165 ~~~~~~~v~~Ll~~g~~~~~~~~~-~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~L~~A~~~~~~~  243 (567)
                       .+..+++..|+..|..++.+... .|.+||++|..+|+.+.++.|++.+.+.+.     ....+..|+|-.|+..|..+
T Consensus       867 -ggy~~iI~~llS~GseInSrtgSklgisPLmlatmngh~~at~~ll~~gsdiNa-----qIeTNrnTaltla~fqgr~e  940 (2131)
T KOG4369|consen  867 -GGYTKIIHALLSSGSEINSRTGSKLGISPLMLATMNGHQAATLSLLQPGSDINA-----QIETNRNTALTLALFQGRPE  940 (2131)
T ss_pred             -cchHHHHHHHhhcccccccccccccCcchhhhhhhccccHHHHHHhcccchhcc-----ccccccccceeeccccCcch
Confidence             55677899999999999887653 468999999999999999999999876643     22345679999999999999


Q ss_pred             HHHHHHhCCCCCCccCCCCCCHHHHHHHcCCeeeeccccccccccccCCCCCCCCCCCccccchhhhhhhhh--hcCCCH
Q psy12891        244 LVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVSSGKSLKHSVMSFRLPPHNIIPNGFLVHDHAAVIDILT--LRKQTP  321 (567)
Q Consensus       244 ~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~--~~~~t~  321 (567)
                      ++.+||.+.+++..+-+-|.|||.-++..|+.++-.                       ++...+++.+.-.  ....|+
T Consensus       941 vv~lLLa~~anvehRaktgltplme~AsgGyvdvg~-----------------------~li~~gad~nasPvp~T~dta  997 (2131)
T KOG4369|consen  941 VVFLLLAAQANVEHRAKTGLTPLMEMASGGYVDVGN-----------------------LLIAAGADTNASPVPNTWDTA  997 (2131)
T ss_pred             HHHHHHHHhhhhhhhcccCCcccchhhcCCccccch-----------------------hhhhcccccccCCCCCcCCcc
Confidence            999999999999999999999999999999999987                       7788888877643  345689


Q ss_pred             HHHHHHcCcHHHHHHHHHcCCCCCCcCcCCCCHHHHHHHcCCHHHHHHHHHhCCCCccccCCCCCcHHHHHHHcCCHHHH
Q psy12891        322 LHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVI  401 (567)
Q Consensus       322 L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~  401 (567)
                      |.+++..|+.+.++.|+...+.++.+++.|.|+|..|+..|....+..|+++..+ .+..+....++++.|.++|+++||
T Consensus       998 lti~a~kGh~kfv~~lln~~atv~v~NkkG~T~Lwla~~Gg~lss~~il~~~~ad-~d~qdnr~~S~~maafRKgh~~iV 1076 (2131)
T KOG4369|consen  998 LTIPANKGHTKFVPKLLNGDATVRVPNKKGCTVLWLASAGGALSSCPILVSSVAD-ADQQDNRTNSRTMAAFRKGHFAIV 1076 (2131)
T ss_pred             ceeecCCCchhhhHHhhCCccceecccCCCCcccchhccCCccccchHHhhcccC-hhhhhcccccccHHHHHhchhhee
Confidence            9999999999999999999999999999999999999999999999999999887 677888888999999999999999


Q ss_pred             HHHHhc
Q psy12891        402 EELMKF  407 (567)
Q Consensus       402 ~~ll~~  407 (567)
                      ++++..
T Consensus      1077 k~mv~~ 1082 (2131)
T KOG4369|consen 1077 KKMVPP 1082 (2131)
T ss_pred             ccccCc
Confidence            999864

>KOG4369|consensus

Probab=99.96  E-value=9e-30  Score=244.80  Aligned_cols=325  Identities=24%  Similarity=0.247  Sum_probs=288.8

Q ss_pred             CCChhHHHHhcCchhHHHHHHHhhhhhhhhHHhhhhcccccccccHHHHHHHhCCcccccccccccHHHHHHHHHcCCCc
Q psy12891        103 GETPLHLASRNCKAEVVDLLIQFVQNISQEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGADV  182 (567)
Q Consensus       103 g~t~L~~A~~~~~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~~~v~~Ll~~g~~~  182 (567)
                      -.|+|-.||..||.|+|++|+..|++         +..+|..|.+||-+|+.           .++..+|+.|+.+.+++
T Consensus       757 ~~t~LT~acaggh~e~vellv~rgan---------iehrdkkgf~plImaat-----------agh~tvV~~llk~ha~v  816 (2131)
T KOG4369|consen  757 IKTNLTSACAGGHREEVELLVVRGAN---------IEHRDKKGFVPLIMAAT-----------AGHITVVQDLLKAHADV  816 (2131)
T ss_pred             ccccccccccCccHHHHHHHHHhccc---------ccccccccchhhhhhcc-----------cCchHHHHHHHhhhhhh
Confidence            45899999999999999999999998         68889999999999987           45666799999999999


Q ss_pred             cccccCCCccHHHHHHhcCCHHHHHHHHHhccCcchhhhhhcCCCCCChHHHHHHhcCcHHHHHHHHhCCCCCCccCCCC
Q psy12891        183 SLQTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEG  262 (567)
Q Consensus       183 ~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~  262 (567)
                      ....+.++.|+|-+||..|..++++.||..+..-+      .++-...|||..|...|..+++..|+..|++++.+... 
T Consensus       817 eaQsdrtkdt~lSlacsggr~~vvelLl~~ganke------hrnvsDytPlsla~Sggy~~iI~~llS~GseInSrtgS-  889 (2131)
T KOG4369|consen  817 EAQSDRTKDTMLSLACSGGRTRVVELLLNAGANKE------HRNVSDYTPLSLARSGGYTKIIHALLSSGSEINSRTGS-  889 (2131)
T ss_pred             hhhcccccCceEEEecCCCcchHHHHHHHhhcccc------ccchhhcCchhhhcCcchHHHHHHHhhccccccccccc-
Confidence            99999889999999999999999999999876543      35556789999999999999999999999988865421 


Q ss_pred             CCHHHHHHHcCCeeeeccccccccccccCCCCCCCCCCCccccchhhhhhhhhhcCCCHHHHHHHcCcHHHHHHHHHcCC
Q psy12891        263 RSALHLAAEHGYLKVSSGKSLKHSVMSFRLPPHNIIPNGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGA  342 (567)
Q Consensus       263 ~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~~g~  342 (567)
                                                                           ..|..||+.|..+|+.+.++.|++.|.
T Consensus       890 -----------------------------------------------------klgisPLmlatmngh~~at~~ll~~gs  916 (2131)
T KOG4369|consen  890 -----------------------------------------------------KLGISPLMLATMNGHQAATLSLLQPGS  916 (2131)
T ss_pred             -----------------------------------------------------ccCcchhhhhhhccccHHHHHHhcccc
Confidence                                                                 235578999999999999999999999


Q ss_pred             CCCCcC-cCCCCHHHHHHHcCCHHHHHHHHHhCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCC
Q psy12891        343 SIDATD-DQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTE  421 (567)
Q Consensus       343 ~~~~~~-~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~  421 (567)
                      |+|..- .+-+|+|.+|+..|+.+++.+|+...+. +..+-..|.|||+.++..|.+++-+.|+..|++........ ..
T Consensus       917 diNaqIeTNrnTaltla~fqgr~evv~lLLa~~an-vehRaktgltplme~AsgGyvdvg~~li~~gad~nasPvp~-T~  994 (2131)
T KOG4369|consen  917 DINAQIETNRNTALTLALFQGRPEVVFLLLAAQAN-VEHRAKTGLTPLMEMASGGYVDVGNLLIAAGADTNASPVPN-TW  994 (2131)
T ss_pred             hhccccccccccceeeccccCcchHHHHHHHHhhh-hhhhcccCCcccchhhcCCccccchhhhhcccccccCCCCC-cC
Confidence            998753 4667899999999999999999998777 78888999999999999999999999999998876555544 33


Q ss_pred             CCHHHHHHHcCcHHHHHHHHHcCCCCCCccCcCCcHHHHHHHcCcHHHHHHHHhcccccccccccCCcHHHHHHHcCCHH
Q psy12891        422 ATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLGVTALHVAAYFGQAD  501 (567)
Q Consensus       422 ~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~  501 (567)
                      .|+|..++..|+...++.|+...+.+..+|.+|.|+|++|+..|+...++.|++++++.+..|+.-.++++.|.++|+++
T Consensus       995 dtalti~a~kGh~kfv~~lln~~atv~v~NkkG~T~Lwla~~Gg~lss~~il~~~~ad~d~qdnr~~S~~maafRKgh~~ 1074 (2131)
T KOG4369|consen  995 DTALTIPANKGHTKFVPKLLNGDATVRVPNKKGCTVLWLASAGGALSSCPILVSSVADADQQDNRTNSRTMAAFRKGHFA 1074 (2131)
T ss_pred             CccceeecCCCchhhhHHhhCCccceecccCCCCcccchhccCCccccchHHhhcccChhhhhcccccccHHHHHhchhh
Confidence            49999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhc
Q psy12891        502 TVRELLSH  509 (567)
Q Consensus       502 ~~~~Ll~~  509 (567)
                      ||+|....
T Consensus      1075 iVk~mv~~ 1082 (2131)
T KOG4369|consen 1075 IVKKMVPP 1082 (2131)
T ss_pred             eeccccCc
Confidence            99998853

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.96  E-value=1.5e-27  Score=204.14  Aligned_cols=183  Identities=16%  Similarity=0.199  Sum_probs=98.4

Q ss_pred             hhhhhhcCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCcCCCCHHHHHHHcC--CHHHHHHHHHhCCCCccccC-CCCCc
Q psy12891        311 IDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNN--FPEVAQIFLRAHPSLVTATT-KDGNT  387 (567)
Q Consensus       311 ~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~--~~~~~~~Ll~~~~~~~~~~~-~~~~~  387 (567)
                      .+.....+.+||+.|+..|+.+.|+.|++.   ++..+..|.||||+|+..+  +.+++++|++.+++ ++..+ ..|.|
T Consensus        14 ~~~~~~~~~~pL~~A~~~~~~~~vk~Li~~---~n~~~~~g~TpLh~a~~~~~~~~eiv~~Ll~~gad-vn~~~~~~g~T   89 (209)
T PHA02859         14 TDYLFYRYCNPLFYYVEKDDIEGVKKWIKF---VNDCNDLYETPIFSCLEKDKVNVEILKFLIENGAD-VNFKTRDNNLS   89 (209)
T ss_pred             HHHHhhccCcHHHHHHHhCcHHHHHHHHHh---hhccCccCCCHHHHHHHcCCCCHHHHHHHHHCCCC-CCccCCCCCCC
Confidence            334445556677777777777777766654   3445566666666666543  56666666666555 23332 34555


Q ss_pred             HHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCccCcCCcHHHHHHH--cC
Q psy12891        388 CAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQ--NG  465 (567)
Q Consensus       388 ~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~--~~  465 (567)
                      |||+|+..+                                 ..++.+++++|+++|+++|.+|..|.||||+|+.  .+
T Consensus        90 pLh~a~~~~---------------------------------~~~~~eiv~~Ll~~gadin~~d~~G~TpLh~a~~~~~~  136 (209)
T PHA02859         90 ALHHYLSFN---------------------------------KNVEPEILKILIDSGSSITEEDEDGKNLLHMYMCNFNV  136 (209)
T ss_pred             HHHHHHHhC---------------------------------ccccHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhccC
Confidence            555444321                                 0124455555555555555555555555555543  23


Q ss_pred             cHHHHHHHHhcccccccccccCCcHHHH-HHHcCCHHHHHHHHhcCCCCCCCCCCCCcccccccCCCCCCCHHHHHHHc
Q psy12891        466 HNQVLEEMRSSKALNVYSKKLGVTALHV-AAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYS  543 (567)
Q Consensus       466 ~~~~v~~Ll~~~~~~~~~~~~g~t~l~~-A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~  543 (567)
                      +.+++++|++.|++++.+|..|.||||. |+..++.+++++|++++.+.             +.+|..|.|||++|+.+
T Consensus       137 ~~~iv~~Li~~gadin~~d~~g~t~Lh~~a~~~~~~~iv~~Ll~~Gadi-------------~~~d~~g~tpl~la~~~  202 (209)
T PHA02859        137 RINVIKLLIDSGVSFLNKDFDNNNILYSYILFHSDKKIFDFLTSLGIDI-------------NETNKSGYNCYDLIKFR  202 (209)
T ss_pred             CHHHHHHHHHcCCCcccccCCCCcHHHHHHHhcCCHHHHHHHHHcCCCC-------------CCCCCCCCCHHHHHhhh
Confidence            4555555555555555555555555553 33445555555555554433             33445555555555543

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.96  E-value=2.3e-27  Score=202.98  Aligned_cols=154  Identities=16%  Similarity=0.239  Sum_probs=121.0

Q ss_pred             hhhhhhhcCCCHHHHHHHcC--cHHHHHHHHHcCCCCCCcC-cCCCCHHHHHHHc---CCHHHHHHHHHhCCCCccccCC
Q psy12891        310 VIDILTLRKQTPLHLAAEAG--QLQVCKLLLDLGASIDATD-DQGQKPIHVAAQN---NFPEVAQIFLRAHPSLVTATTK  383 (567)
Q Consensus       310 ~~~~~~~~~~t~L~~a~~~~--~~~~v~~Ll~~g~~~~~~~-~~g~t~L~~A~~~---~~~~~~~~Ll~~~~~~~~~~~~  383 (567)
                      .++..+..|.||||.|+.++  +.+++++|+++|++++.++ ..|.||||+|+..   ++.+++++|++++++ ++..+.
T Consensus        43 ~~n~~~~~g~TpLh~a~~~~~~~~eiv~~Ll~~gadvn~~~~~~g~TpLh~a~~~~~~~~~eiv~~Ll~~gad-in~~d~  121 (209)
T PHA02859         43 FVNDCNDLYETPIFSCLEKDKVNVEILKFLIENGADVNFKTRDNNLSALHHYLSFNKNVEPEILKILIDSGSS-ITEEDE  121 (209)
T ss_pred             hhhccCccCCCHHHHHHHcCCCCHHHHHHHHHCCCCCCccCCCCCCCHHHHHHHhCccccHHHHHHHHHCCCC-CCCcCC
Confidence            36677889999999999865  8999999999999999997 5899999998754   367888888877666 455555


Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCccCcCCcHHHH-HH
Q psy12891        384 DGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHL-AA  462 (567)
Q Consensus       384 ~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~-A~  462 (567)
                      .|.||||.|+..                                  ..++.+++++|+++|++++.+|..|.||||. |+
T Consensus       122 ~G~TpLh~a~~~----------------------------------~~~~~~iv~~Li~~gadin~~d~~g~t~Lh~~a~  167 (209)
T PHA02859        122 DGKNLLHMYMCN----------------------------------FNVRINVIKLLIDSGVSFLNKDFDNNNILYSYIL  167 (209)
T ss_pred             CCCCHHHHHHHh----------------------------------ccCCHHHHHHHHHcCCCcccccCCCCcHHHHHHH
Confidence            555555544321                                  1346788888888888888888888888885 45


Q ss_pred             HcCcHHHHHHHHhcccccccccccCCcHHHHHHHcC
Q psy12891        463 QNGHNQVLEEMRSSKALNVYSKKLGVTALHVAAYFG  498 (567)
Q Consensus       463 ~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~  498 (567)
                      ..++.+++++|+++|++++.+|..|+|||++|+..+
T Consensus       168 ~~~~~~iv~~Ll~~Gadi~~~d~~g~tpl~la~~~~  203 (209)
T PHA02859        168 FHSDKKIFDFLTSLGIDINETNKSGYNCYDLIKFRN  203 (209)
T ss_pred             hcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHhhhh
Confidence            677888888888888888888888888888887543

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.94  E-value=3.7e-26  Score=235.65  Aligned_cols=226  Identities=23%  Similarity=0.249  Sum_probs=183.3

Q ss_pred             CCCHHHHHHHcCcHHHHHHHHHc--CCCCCCcCcCCCCHHH-HHHHcCCHHHHHHHHHhCCCCccccCCCCCcHHHHHHH
Q psy12891        318 KQTPLHLAAEAGQLQVCKLLLDL--GASIDATDDQGQKPIH-VAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAM  394 (567)
Q Consensus       318 ~~t~L~~a~~~~~~~~v~~Ll~~--g~~~~~~~~~g~t~L~-~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~  394 (567)
                      +...++.|++.|+.+.++.+++.  +.++|..|..|.|||| .|+.+++.++++.|++.+.     .+..|.||||.|+.
T Consensus        17 ~~~~~l~A~~~g~~~~v~~lL~~~~~~~in~~d~~G~t~Lh~~A~~~~~~eiv~lLl~~g~-----~~~~G~T~Lh~A~~   91 (743)
T TIGR00870        17 EEKAFLPAAERGDLASVYRDLEEPKKLNINCPDRLGRSALFVAAIENENLELTELLLNLSC-----RGAVGDTLLHAISL   91 (743)
T ss_pred             HHHHHHHHHHcCCHHHHHHHhccccccCCCCcCccchhHHHHHHHhcChHHHHHHHHhCCC-----CCCcChHHHHHHHh
Confidence            45789999999999999999999  9999999999999999 8999999999999999875     56789999999987


Q ss_pred             cC---CHHHHHHHHhcCCCcc-------cccCCCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcc-------------
Q psy12891        395 QG---SVGVIEELMKFDRSGV-------ISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDEN-------------  451 (567)
Q Consensus       395 ~~---~~~~~~~ll~~~~~~~-------~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~-------------  451 (567)
                      .+   ...++..+........       ........|.||||+|+..|+.+++++|+++|++++.++             
T Consensus        92 ~~~~~v~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~G~TpLhlAa~~~~~eiVklLL~~GAdv~~~~~~~~~~~~~~~~~  171 (743)
T TIGR00870        92 EYVDAVEAILLHLLAAFRKSGPLELANDQYTSEFTPGITALHLAAHRQNYEIVKLLLERGASVPARACGDFFVKSQGVDS  171 (743)
T ss_pred             ccHHHHHHHHHHHhhcccccCchhhhccccccccCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCcCCchhhcCCCCCc
Confidence            22   2233344443332210       111123468999999999999999999999999999653             


Q ss_pred             -CcCCcHHHHHHHcCcHHHHHHHHhcccccccccccCCcHHHHHHHcC---------CHHHHHHHHhcCCCCCCCCCCCC
Q psy12891        452 -KTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLGVTALHVAAYFG---------QADTVRELLSHVPGTVKSDPPTG  521 (567)
Q Consensus       452 -~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~---------~~~~~~~Ll~~~~~~~~~~~~~~  521 (567)
                       ..|+||||.|+..|+.+++++|+++|++++..|..|+||||+|+..+         ...+.+++++.+.......    
T Consensus       172 ~~~g~tpL~~Aa~~~~~~iv~lLl~~gadin~~d~~g~T~Lh~A~~~~~~~~~~~~l~~~~~~~l~~ll~~~~~~~----  247 (743)
T TIGR00870       172 FYHGESPLNAAACLGSPSIVALLSEDPADILTADSLGNTLLHLLVMENEFKAEYEELSCQMYNFALSLLDKLRDSK----  247 (743)
T ss_pred             ccccccHHHHHHHhCCHHHHHHHhcCCcchhhHhhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCChH----
Confidence             35899999999999999999999999999999999999999999886         2346666766654432211    


Q ss_pred             cccccccCCCCCCCHHHHHHHcCCHHHHHHHHh
Q psy12891        522 ASFLGELGSESGMTPLHLAAYSGNENVVRLLLN  554 (567)
Q Consensus       522 ~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~  554 (567)
                        -+..+.|..|.|||++|+..|+.+++++|++
T Consensus       248 --el~~i~N~~g~TPL~~A~~~g~~~l~~lLL~  278 (743)
T TIGR00870       248 --ELEVILNHQGLTPLKLAAKEGRIVLFRLKLA  278 (743)
T ss_pred             --hhhhhcCCCCCCchhhhhhcCCccHHHHHHH
Confidence              1124568899999999999999999999998

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>KOG0502|consensus

Probab=99.94  E-value=1e-26  Score=183.35  Aligned_cols=187  Identities=28%  Similarity=0.359  Sum_probs=170.4

Q ss_pred             CCCCCCCCChHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCChhHHHHhcCchhHHHHHHHhhhhhhhhHHhhhhcccc
Q psy12891         63 PNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVVDLLIQFVQNISQEKVLEYVNSVN  142 (567)
Q Consensus        63 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~~~~~~~~~~~~~~~~~~  142 (567)
                      +...+++|+.+++.|+-.|+.+.+..++.+|+..|..+..+++|+.+++...+.+++..+.+.           .+|..|
T Consensus        89 ~~~t~p~g~~~~~v~ap~~s~~k~sttltN~~rgnevs~~p~s~~slsVhql~L~~~~~~~~n-----------~VN~~D  157 (296)
T KOG0502|consen   89 IDETDPEGWSALLVAAPCGSVDKVSTTLTNGARGNEVSLMPWSPLSLSVHQLHLDVVDLLVNN-----------KVNACD  157 (296)
T ss_pred             CCCCCchhhhhhhhcCCCCCcceeeeeecccccCCccccccCChhhHHHHHHHHHHHHHHhhc-----------cccCcc
Confidence            445677899999999999999999999999999999999999999999999999888887763           378899


Q ss_pred             cccccHHHHHHHhCCcccccccccccHHHHHHHHHcCCCccccccCCCccHHHHHHhcCCHHHHHHHHHhccCcchhhhh
Q psy12891        143 EDGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGADVSLQTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKAL  222 (567)
Q Consensus       143 ~~~~t~L~~a~~~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~  222 (567)
                      ..|.|||.||+.           +++..+|++|++.|++++....+. .++|.+|+..|..++++.|+.+..+      +
T Consensus       158 e~GfTpLiWAaa-----------~G~i~vV~fLL~~GAdp~~lgk~r-esALsLAt~ggytdiV~lLL~r~vd------V  219 (296)
T KOG0502|consen  158 EFGFTPLIWAAA-----------KGHIPVVQFLLNSGADPDALGKYR-ESALSLATRGGYTDIVELLLTREVD------V  219 (296)
T ss_pred             ccCchHhHHHHh-----------cCchHHHHHHHHcCCChhhhhhhh-hhhHhHHhcCChHHHHHHHHhcCCC------c
Confidence            999999999998           556677999999999999887766 8999999999999999999999665      4


Q ss_pred             hcCCCCCChHHHHHHhcCcHHHHHHHHhCCCCCCccCCCCCCHHHHHHHcCCeeeec
Q psy12891        223 NKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVSS  279 (567)
Q Consensus       223 ~~~~~~~~~~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~  279 (567)
                      +..|.+|.|||.+|++.++.++++.|++.|++++..+..|++++..|+..|+. +++
T Consensus       220 NvyDwNGgTpLlyAvrgnhvkcve~Ll~sGAd~t~e~dsGy~~mdlAValGyr-~Vq  275 (296)
T KOG0502|consen  220 NVYDWNGGTPLLYAVRGNHVKCVESLLNSGADVTQEDDSGYWIMDLAVALGYR-IVQ  275 (296)
T ss_pred             ceeccCCCceeeeeecCChHHHHHHHHhcCCCcccccccCCcHHHHHHHhhhH-HHH
Confidence            78999999999999999999999999999999999999999999999999987 444

>KOG0502|consensus

Probab=99.93  E-value=4.6e-27  Score=185.24  Aligned_cols=194  Identities=20%  Similarity=0.222  Sum_probs=177.4

Q ss_pred             hhhhhhcCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCcCCCCHHHHHHHcCCHHHHHHHHHhCCCCccccCCCCCcHHH
Q psy12891        311 IDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAH  390 (567)
Q Consensus       311 ~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~  390 (567)
                      ++..+.+|.+.++.++..++...++.++.+|+..|..+..+.+|+..++...+.+.+..+.+..   ++..|..|.|||.
T Consensus        89 ~~~t~p~g~~~~~v~ap~~s~~k~sttltN~~rgnevs~~p~s~~slsVhql~L~~~~~~~~n~---VN~~De~GfTpLi  165 (296)
T KOG0502|consen   89 IDETDPEGWSALLVAAPCGSVDKVSTTLTNGARGNEVSLMPWSPLSLSVHQLHLDVVDLLVNNK---VNACDEFGFTPLI  165 (296)
T ss_pred             CCCCCchhhhhhhhcCCCCCcceeeeeecccccCCccccccCChhhHHHHHHHHHHHHHHhhcc---ccCccccCchHhH
Confidence            4455667999999999999999999999999999999999999999999998888887766643   7788999999999


Q ss_pred             HHHHcCCHHHHHHHHhcCCCcccccCCCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCccCcCCcHHHHHHHcCcHHHH
Q psy12891        391 IAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVL  470 (567)
Q Consensus       391 ~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v  470 (567)
                      +|+..|+..++++|++.|+++....+   ...++|.+|+..|..++|++|++++.|+|..|-+|-|||-+|++.++.+++
T Consensus       166 WAaa~G~i~vV~fLL~~GAdp~~lgk---~resALsLAt~ggytdiV~lLL~r~vdVNvyDwNGgTpLlyAvrgnhvkcv  242 (296)
T KOG0502|consen  166 WAAAKGHIPVVQFLLNSGADPDALGK---YRESALSLATRGGYTDIVELLLTREVDVNVYDWNGGTPLLYAVRGNHVKCV  242 (296)
T ss_pred             HHHhcCchHHHHHHHHcCCChhhhhh---hhhhhHhHHhcCChHHHHHHHHhcCCCcceeccCCCceeeeeecCChHHHH
Confidence            99999999999999999998766655   456999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhcccccccccccCCcHHHHHHHcCCHHHHHHHHhcCC
Q psy12891        471 EEMRSSKALNVYSKKLGVTALHVAAYFGQADTVRELLSHVP  511 (567)
Q Consensus       471 ~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~  511 (567)
                      +.|++.|+++...+..|++++..|+..|+. +|+..+++..
T Consensus       243 e~Ll~sGAd~t~e~dsGy~~mdlAValGyr-~Vqqvie~h~  282 (296)
T KOG0502|consen  243 ESLLNSGADVTQEDDSGYWIMDLAVALGYR-IVQQVIEKHA  282 (296)
T ss_pred             HHHHhcCCCcccccccCCcHHHHHHHhhhH-HHHHHHHHHH
Confidence            999999999999999999999999999998 8888777643

>KOG0507|consensus

Probab=99.92  E-value=1.1e-24  Score=203.17  Aligned_cols=252  Identities=25%  Similarity=0.346  Sum_probs=216.3

Q ss_pred             HHHHHhcCcHHHHHHHHhC-------------CCCCCccCCCCCCHHHHHHHcCCeeeeccccccccccccCCCCCCCCC
Q psy12891        233 LLIACNRGHMELVNTMLNN-------------HARVDVFDQEGRSALHLAAEHGYLKVSSGKSLKHSVMSFRLPPHNIIP  299 (567)
Q Consensus       233 L~~A~~~~~~~~v~~Ll~~-------------g~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (567)
                      +..|++.|+++.+..|++.             ..+.+..|.+|.|+||.|+.+|+..+++                    
T Consensus         7 l~~a~ka~d~~tva~ll~~~~~r~~~l~~~trsds~n~qd~~gfTalhha~Lng~~~is~--------------------   66 (854)
T KOG0507|consen    7 LIDACKAGDYDTVALLLSSKKGRSGLLFFTTRSDSHNLQDYSGFTLLHHAVLNGQNQISK--------------------   66 (854)
T ss_pred             HHHhhhcccHHHHHHhccCCCCCCCCCCCCCCCccccccCccchhHHHHHHhcCchHHHH--------------------
Confidence            4456666666666666653             1245667889999999999999999998                    


Q ss_pred             CCccccchhhhhhhhhhcCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCcCCCCHHHHHHHcCCHHHHHHHHHhCCCCcc
Q psy12891        300 NGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVT  379 (567)
Q Consensus       300 ~~~ll~~~~~~~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~  379 (567)
                         ++.+....++..+..|.+|||+|+.+|+.+++++++.++..+|..+..|.||||.|++.++.+++.+|+.++.+ ..
T Consensus        67 ---llle~ea~ldl~d~kg~~plhlaaw~g~~e~vkmll~q~d~~na~~~e~~tplhlaaqhgh~dvv~~Ll~~~ad-p~  142 (854)
T KOG0507|consen   67 ---LLLDYEALLDLCDTKGILPLHLAAWNGNLEIVKMLLLQTDILNAVNIENETPLHLAAQHGHLEVVFYLLKKNAD-PF  142 (854)
T ss_pred             ---HHhcchhhhhhhhccCcceEEehhhcCcchHHHHHHhcccCCCcccccCcCccchhhhhcchHHHHHHHhcCCC-cc
Confidence               88899999999999999999999999999999999999999999999999999999999999999999999888 67


Q ss_pred             ccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcc-----cccCCCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCccCcC
Q psy12891        380 ATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGV-----ISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTG  454 (567)
Q Consensus       380 ~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~-----~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g  454 (567)
                      .++..+.|++..|++-|..++++.|++......     ........+.+|||.|+++|+.++++.|++.|.++|.....|
T Consensus       143 i~nns~~t~ldlA~qfgr~~Vvq~ll~~~~~~~~~~~~~~~~~~~~~~~plHlaakngh~~~~~~ll~ag~din~~t~~g  222 (854)
T KOG0507|consen  143 IRNNSKETVLDLASRFGRAEVVQMLLQKKFPVQSSLRVGDIKRPFPAIYPLHLAAKNGHVECMQALLEAGFDINYTTEDG  222 (854)
T ss_pred             ccCcccccHHHHHHHhhhhHHHHHHhhhccchhhcccCCCCCCCCCCcCCcchhhhcchHHHHHHHHhcCCCcccccccc
Confidence            889999999999999999999999988632211     123344567799999999999999999999999999876655


Q ss_pred             CcHHHHHHHcCcHHHHHHHHhcccccccccccCCcHHHHHHHc---CCHHHHHHHHhc
Q psy12891        455 FTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLGVTALHVAAYF---GQADTVRELLSH  509 (567)
Q Consensus       455 ~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~---~~~~~~~~Ll~~  509 (567)
                       |+||.|+.+|..++|.+|++.|.....++.+|.|+|++-...   ...+++-++...
T Consensus       223 -talheaalcgk~evvr~ll~~gin~h~~n~~~qtaldil~d~~~~~~~ei~ga~~~~  279 (854)
T KOG0507|consen  223 -TALHEAALCGKAEVVRFLLEIGINTHIKNQHGQTALDIIIDLQENRRYEIAGAVKNF  279 (854)
T ss_pred             -hhhhhHhhcCcchhhhHHHhhccccccccccchHHHHHHHhcchhhhhhhhhhhhcc
Confidence             899999999999999999999999999999999999987744   456777766654

>KOG0507|consensus

Probab=99.92  E-value=1.5e-24  Score=202.30  Aligned_cols=259  Identities=26%  Similarity=0.333  Sum_probs=207.6

Q ss_pred             CChhhHHhhcCChhHHHHHHhhcCCCCChhhhHhhhcCchHHHHHHHhcCCCCCCCCCCCChHHHHHHHhCCHHHHHHHH
Q psy12891         11 ETPLHIAARVKDGDRCALMLLKSGAGPNLTNIAARVKDGDRCALMLLKSGAGPNLTTDDGQTPVHAAAKYGNLVTLQLLL   90 (567)
Q Consensus        11 ~t~L~~A~~~g~~~~v~~~L~~~g~~~~~~~~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll   90 (567)
                      .+-|.-|+..|+.+.++++|-.++..--..              ..-.+...+|..|.+|+|+||.|+..|+.+++++|+
T Consensus         4 ~qel~~a~ka~d~~tva~ll~~~~~r~~~l--------------~~~trsds~n~qd~~gfTalhha~Lng~~~is~lll   69 (854)
T KOG0507|consen    4 KQELIDACKAGDYDTVALLLSSKKGRSGLL--------------FFTTRSDSHNLQDYSGFTLLHHAVLNGQNQISKLLL   69 (854)
T ss_pred             hhhHHHhhhcccHHHHHHhccCCCCCCCCC--------------CCCCCCccccccCccchhHHHHHHhcCchHHHHHHh
Confidence            345778999999998888665554411100              011234557778889999999999999999999999


Q ss_pred             HcCCCCCCCCCCCCChhHHHHhcCchhHHHHHHHhhhhhhhhHHhhhhcccccccccHHHHHHHhCCcccccccccccHH
Q psy12891         91 EDGGDPMYKNKIGETPLHLASRNCKAEVVDLLIQFVQNISQEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQK  170 (567)
Q Consensus        91 ~~ga~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~~  170 (567)
                      +..+-++.++..|.+|||+|+..|+.+++++|+.++..         +|..+.+|.||||.|++.           ++.+
T Consensus        70 e~ea~ldl~d~kg~~plhlaaw~g~~e~vkmll~q~d~---------~na~~~e~~tplhlaaqh-----------gh~d  129 (854)
T KOG0507|consen   70 DYEALLDLCDTKGILPLHLAAWNGNLEIVKMLLLQTDI---------LNAVNIENETPLHLAAQH-----------GHLE  129 (854)
T ss_pred             cchhhhhhhhccCcceEEehhhcCcchHHHHHHhcccC---------CCcccccCcCccchhhhh-----------cchH
Confidence            99999999999999999999999999999999998844         789999999999999994           5666


Q ss_pred             HHHHHHHcCCCccccccCCCccHHHHHHhcCCHHHHHHHHHhccCcchh--hhhhcCCCCCChHHHHHHhcCcHHHHHHH
Q psy12891        171 TVKLLLEAGADVSLQTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEIS--KALNKQTSIGWTPLLIACNRGHMELVNTM  248 (567)
Q Consensus       171 ~v~~Ll~~g~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~--~~~~~~~~~~~~~L~~A~~~~~~~~v~~L  248 (567)
                      ++.+|+++|+++...+.+. .|++..|++.|..+++..|++..-.....  .....++..+.+|||.|+++|+.++++.|
T Consensus       130 vv~~Ll~~~adp~i~nns~-~t~ldlA~qfgr~~Vvq~ll~~~~~~~~~~~~~~~~~~~~~~~plHlaakngh~~~~~~l  208 (854)
T KOG0507|consen  130 VVFYLLKKNADPFIRNNSK-ETVLDLASRFGRAEVVQMLLQKKFPVQSSLRVGDIKRPFPAIYPLHLAAKNGHVECMQAL  208 (854)
T ss_pred             HHHHHHhcCCCccccCccc-ccHHHHHHHhhhhHHHHHHhhhccchhhcccCCCCCCCCCCcCCcchhhhcchHHHHHHH
Confidence            7999999999998877765 99999999999999999999872111110  11233456678999999999999999999


Q ss_pred             HhCCCCCCccCCCCCCHHHHHHHcCCeeeeccccccccccccCCCCCCCCCCCccccchhhhhhhhhhcCCCHHHHHHHc
Q psy12891        249 LNNHARVDVFDQEGRSALHLAAEHGYLKVSSGKSLKHSVMSFRLPPHNIIPNGFLVHDHAAVIDILTLRKQTPLHLAAEA  328 (567)
Q Consensus       249 l~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~L~~a~~~  328 (567)
                      ++.|.++|.....|                                                         |+||.|+..
T Consensus       209 l~ag~din~~t~~g---------------------------------------------------------talheaalc  231 (854)
T KOG0507|consen  209 LEAGFDINYTTEDG---------------------------------------------------------TALHEAALC  231 (854)
T ss_pred             HhcCCCcccccccc---------------------------------------------------------hhhhhHhhc
Confidence            99999998755433                                                         566667777


Q ss_pred             CcHHHHHHHHHcCCCCCCcCcCCCCHHHHHHHc
Q psy12891        329 GQLQVCKLLLDLGASIDATDDQGQKPIHVAAQN  361 (567)
Q Consensus       329 ~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~  361 (567)
                      |..++|++|++.|.+...++.+|+|+|.+-...
T Consensus       232 gk~evvr~ll~~gin~h~~n~~~qtaldil~d~  264 (854)
T KOG0507|consen  232 GKAEVVRFLLEIGINTHIKNQHGQTALDIIIDL  264 (854)
T ss_pred             CcchhhhHHHhhccccccccccchHHHHHHHhc
Confidence            777888888888888888888888887766543

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.92  E-value=8.2e-24  Score=219.06  Aligned_cols=176  Identities=19%  Similarity=0.236  Sum_probs=162.0

Q ss_pred             cCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCcCCCCHHHHHHHcCCHHHHHHHHHhCCCCccccCCCCCcHHHHHHHcC
Q psy12891        317 RKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQG  396 (567)
Q Consensus       317 ~~~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~  396 (567)
                      .+.++|+.|+..|+.++++.|++.|+++|..|..|.||||+|+..|+.+++++|++++++ ++..+.+|.||||.|+..|
T Consensus       524 ~~~~~L~~Aa~~g~~~~l~~Ll~~G~d~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gad-in~~d~~G~TpL~~A~~~g  602 (823)
T PLN03192        524 NMASNLLTVASTGNAALLEELLKAKLDPDIGDSKGRTPLHIAASKGYEDCVLVLLKHACN-VHIRDANGNTALWNAISAK  602 (823)
T ss_pred             cchhHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcChHHHHHHHHhcCCC-CCCcCCCCCCHHHHHHHhC
Confidence            346899999999999999999999999999999999999999999999999999998877 7889999999999999999


Q ss_pred             CHHHHHHHHhcCCCcccccCCCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCccCcCCcHHHHHHHcCcHHHHHHHHhc
Q psy12891        397 SVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSS  476 (567)
Q Consensus       397 ~~~~~~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~  476 (567)
                      +.+++++|++.+....     ...+.++||.|+..|+.+++++|+++|+++|.+|..|+||||+|+..|+.+++++|+++
T Consensus       603 ~~~iv~~L~~~~~~~~-----~~~~~~~L~~Aa~~g~~~~v~~Ll~~Gadin~~d~~G~TpLh~A~~~g~~~iv~~Ll~~  677 (823)
T PLN03192        603 HHKIFRILYHFASISD-----PHAAGDLLCTAAKRNDLTAMKELLKQGLNVDSEDHQGATALQVAMAEDHVDMVRLLIMN  677 (823)
T ss_pred             CHHHHHHHHhcCcccC-----cccCchHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCcHHHHHHHHHc
Confidence            9999999998654422     23566999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccccccccC-CcHHHHHHHcC
Q psy12891        477 KALNVYSKKLG-VTALHVAAYFG  498 (567)
Q Consensus       477 ~~~~~~~~~~g-~t~l~~A~~~~  498 (567)
                      |++++..+..| .||.+.+....
T Consensus       678 GAdv~~~~~~g~~t~~~l~~~~~  700 (823)
T PLN03192        678 GADVDKANTDDDFSPTELRELLQ  700 (823)
T ss_pred             CCCCCCCCCCCCCCHHHHHHHHH
Confidence            99999999888 99998876543

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.91  E-value=2.3e-23  Score=215.72  Aligned_cols=167  Identities=23%  Similarity=0.280  Sum_probs=128.7

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCccCcCCcHHHHH
Q psy12891        382 TKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLA  461 (567)
Q Consensus       382 ~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A  461 (567)
                      +..+.++|+.|+..|+.++++.|++.+.+.   +..+..|.||||+|+..|+.+++++|+++|+++|.+|..|+||||+|
T Consensus       522 ~~~~~~~L~~Aa~~g~~~~l~~Ll~~G~d~---n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadin~~d~~G~TpL~~A  598 (823)
T PLN03192        522 DPNMASNLLTVASTGNAALLEELLKAKLDP---DIGDSKGRTPLHIAASKGYEDCVLVLLKHACNVHIRDANGNTALWNA  598 (823)
T ss_pred             CccchhHHHHHHHcCCHHHHHHHHHCCCCC---CCCCCCCCCHHHHHHHcChHHHHHHHHhcCCCCCCcCCCCCCHHHHH
Confidence            345667788888888888888888776653   34455788888888888888888888888888888888888888888


Q ss_pred             HHcCcHHHHHHHHhcccccccccccCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcccccccCCCCCCCHHHHHH
Q psy12891        462 AQNGHNQVLEEMRSSKALNVYSKKLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAA  541 (567)
Q Consensus       462 ~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~  541 (567)
                      +..|+.+++++|++.++..+.  ..|.++||.|+..|+.+++++|++++++.             +.+|..|.||||+|+
T Consensus       599 ~~~g~~~iv~~L~~~~~~~~~--~~~~~~L~~Aa~~g~~~~v~~Ll~~Gadi-------------n~~d~~G~TpLh~A~  663 (823)
T PLN03192        599 ISAKHHKIFRILYHFASISDP--HAAGDLLCTAAKRNDLTAMKELLKQGLNV-------------DSEDHQGATALQVAM  663 (823)
T ss_pred             HHhCCHHHHHHHHhcCcccCc--ccCchHHHHHHHhCCHHHHHHHHHCCCCC-------------CCCCCCCCCHHHHHH
Confidence            888888888888877764443  34667888888888888888888877654             556778888888888


Q ss_pred             HcCCHHHHHHHHhccCCccccccccC
Q psy12891        542 YSGNENVVRLLLNSAGVQVDAQTQEN  567 (567)
Q Consensus       542 ~~~~~~~v~~Ll~~~g~~~~~~~~~~  567 (567)
                      ..|+.+++++|+++ |+|++.++.+|
T Consensus       664 ~~g~~~iv~~Ll~~-GAdv~~~~~~g  688 (823)
T PLN03192        664 AEDHVDMVRLLIMN-GADVDKANTDD  688 (823)
T ss_pred             HCCcHHHHHHHHHc-CCCCCCCCCCC
Confidence            88888888888875 88888877654

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.91  E-value=1.2e-23  Score=217.09  Aligned_cols=127  Identities=24%  Similarity=0.201  Sum_probs=100.4

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHhcCCCccccc-----------CCCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcc
Q psy12891        383 KDGNTCAHIAAMQGSVGVIEELMKFDRSGVISA-----------RNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDEN  451 (567)
Q Consensus       383 ~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~-----------~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~  451 (567)
                      ..|.||||.|+.+++.++++.|+++|++.....           .....|.||||.|+..|+.+++++|+++|+|++..|
T Consensus       126 ~~G~TpLhlAa~~~~~eiVklLL~~GAdv~~~~~~~~~~~~~~~~~~~~g~tpL~~Aa~~~~~~iv~lLl~~gadin~~d  205 (743)
T TIGR00870       126 TPGITALHLAAHRQNYEIVKLLLERGASVPARACGDFFVKSQGVDSFYHGESPLNAAACLGSPSIVALLSEDPADILTAD  205 (743)
T ss_pred             CCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCcCCchhhcCCCCCcccccccHHHHHHHhCCHHHHHHHhcCCcchhhHh
Confidence            346677777777777777777776665543211           112358899999999999999999999999999999


Q ss_pred             CcCCcHHHHHHHcC---------cHHHHHHHHhccccc-------ccccccCCcHHHHHHHcCCHHHHHHHHhc
Q psy12891        452 KTGFTAVHLAAQNG---------HNQVLEEMRSSKALN-------VYSKKLGVTALHVAAYFGQADTVRELLSH  509 (567)
Q Consensus       452 ~~g~t~l~~A~~~~---------~~~~v~~Ll~~~~~~-------~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~  509 (567)
                      ..|+||||+|+..+         ...+.+++++.++..       ...|..|.||||+|+..|+.+++++|++.
T Consensus       206 ~~g~T~Lh~A~~~~~~~~~~~~l~~~~~~~l~~ll~~~~~~~el~~i~N~~g~TPL~~A~~~g~~~l~~lLL~~  279 (743)
T TIGR00870       206 SLGNTLLHLLVMENEFKAEYEELSCQMYNFALSLLDKLRDSKELEVILNHQGLTPLKLAAKEGRIVLFRLKLAI  279 (743)
T ss_pred             hhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCChHhhhhhcCCCCCCchhhhhhcCCccHHHHHHHH
Confidence            99999999999987         234566666665543       56788999999999999999999999984

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>KOG0505|consensus

Probab=99.90  E-value=1.4e-23  Score=188.89  Aligned_cols=214  Identities=28%  Similarity=0.382  Sum_probs=178.7

Q ss_pred             hHhhhcCchHHHHHHHhcCCCCCCCCCCCChHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCChhHHHHhcCchhHHHH
Q psy12891         42 IAARVKDGDRCALMLLKSGAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVVDL  121 (567)
Q Consensus        42 ~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~~~~~iv~~  121 (567)
                      +.|...+..+-+..|+..|+++|..+.+|.|+||-+|...+.+||++|+++|++||..|..++||||.|+.+|+..++++
T Consensus        45 l~A~~~~d~~ev~~ll~~ga~~~~~n~DglTalhq~~id~~~e~v~~l~e~ga~Vn~~d~e~wtPlhaaascg~~~i~~~  124 (527)
T KOG0505|consen   45 LEACSRGDLEEVRKLLNRGASPNLCNVDGLTALHQACIDDNLEMVKFLVENGANVNAQDNEGWTPLHAAASCGYLNIVEY  124 (527)
T ss_pred             HhccccccHHHHHHHhccCCCccccCCccchhHHHHHhcccHHHHHHHHHhcCCccccccccCCcchhhcccccHHHHHH
Confidence            56777777788888999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhhhhhhhHHhhhhcccccccccHHHHHHHhCCcccc-----------cccc----cccHHHHHHHHHcCCCccccc
Q psy12891        122 LIQFVQNISQEKVLEYVNSVNEDGASALHYACQVTKAELI-----------PITS----KEDQKTVKLLLEAGADVSLQT  186 (567)
Q Consensus       122 Ll~~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~-----------~~~~----~~~~~~v~~Ll~~g~~~~~~~  186 (567)
                      |+++|++         +-..+.+|..|+..+......++.           +...    ..-.+-+...+..|...+...
T Consensus       125 li~~gA~---------~~avNsdg~~P~dl~e~ea~~~~l~~~~~r~gi~iea~R~~~e~~ml~D~~q~l~~G~~~d~~~  195 (527)
T KOG0505|consen  125 LIQHGAN---------LLAVNSDGNMPYDLAEDEATLDVLETEMARQGIDIEAARKAEEQTMLDDARQWLNAGAELDARH  195 (527)
T ss_pred             HHHhhhh---------hhhccCCCCCccccccCcchhHHHHHHHHHhcccHHHHhhhhHHHHHHHHHHHHhccccccccc
Confidence            9999998         445566666555544332222211           1111    112233445555888888888


Q ss_pred             cCCCccHHHHHHhcCCHHHHHHHHHhccCcchhhhhhcCCCCCChHHHHHHhcCcHHHHHHHHhCCCCCCccCCCCCCHH
Q psy12891        187 KQNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSAL  266 (567)
Q Consensus       187 ~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l  266 (567)
                      .. |.|.||.|+.+|..++.++|++.+...      +.+|..|++|||.|+..|..++.++|+++|++.+.....|.+|+
T Consensus       196 ~r-G~T~lHvAaa~Gy~e~~~lLl~ag~~~------~~~D~dgWtPlHAAA~Wg~~~~~elL~~~ga~~d~~t~~g~~p~  268 (527)
T KOG0505|consen  196 AR-GATALHVAAANGYTEVAALLLQAGYSV------NIKDYDGWTPLHAAAHWGQEDACELLVEHGADMDAKTKMGETPL  268 (527)
T ss_pred             cc-cchHHHHHHhhhHHHHHHHHHHhccCc------ccccccCCCcccHHHHhhhHhHHHHHHHhhcccchhhhcCCCCc
Confidence            77 799999999999999999999997665      67899999999999999999999999999999999999999999


Q ss_pred             HHHHH
Q psy12891        267 HLAAE  271 (567)
Q Consensus       267 ~~a~~  271 (567)
                      .+|..
T Consensus       269 dv~de  273 (527)
T KOG0505|consen  269 DVADE  273 (527)
T ss_pred             cchhh
Confidence            88765

>KOG0514|consensus

Probab=99.90  E-value=1.9e-23  Score=178.02  Aligned_cols=164  Identities=25%  Similarity=0.360  Sum_probs=147.9

Q ss_pred             CCCcCcCCCCHHHHHHHcCCHHHHHHHHHhCCCCccccCCCCCcHHHHHHHc-----CCHHHHHHHHhcCCCcccccCCC
Q psy12891        344 IDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQ-----GSVGVIEELMKFDRSGVISARNR  418 (567)
Q Consensus       344 ~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~-----~~~~~~~~ll~~~~~~~~~~~~~  418 (567)
                      +|..|.+|+|+|||++.+.++++|+.|+..+...++..++.|+||+++++..     ...++|..|+..+.   ++.+-.
T Consensus       261 VNlaDsNGNTALHYsVSHaNF~VV~~LLDSgvC~VD~qNrAGYtpiMLaALA~lk~~~d~~vV~~LF~mgn---VNaKAs  337 (452)
T KOG0514|consen  261 VNLADSNGNTALHYAVSHANFDVVSILLDSGVCDVDQQNRAGYTPVMLAALAKLKQPADRTVVERLFKMGD---VNAKAS  337 (452)
T ss_pred             hhhhcCCCCeeeeeeecccchHHHHHHhccCcccccccccccccHHHHHHHHhhcchhhHHHHHHHHhccC---cchhhh
Confidence            4668999999999999999999999999999999999999999999988753     46678899988754   344555


Q ss_pred             CCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCccCcCCcHHHHHHHcCcHHHHHHHHhcc-cccccccccCCcHHHHHHHc
Q psy12891        419 VTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSK-ALNVYSKKLGVTALHVAAYF  497 (567)
Q Consensus       419 ~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~-~~~~~~~~~g~t~l~~A~~~  497 (567)
                      .-|.|+|++|+.+|+.++|+.||..|+|+|.+|.+|-|+||.|+++|+.+|+++||... .+....|.+|-|+|.+|...
T Consensus       338 Q~gQTALMLAVSHGr~d~vk~LLacgAdVNiQDdDGSTALMCA~EHGhkEivklLLA~p~cd~sLtD~DgSTAl~IAlea  417 (452)
T KOG0514|consen  338 QHGQTALMLAVSHGRVDMVKALLACGADVNIQDDDGSTALMCAAEHGHKEIVKLLLAVPSCDISLTDVDGSTALSIALEA  417 (452)
T ss_pred             hhcchhhhhhhhcCcHHHHHHHHHccCCCccccCCccHHHhhhhhhChHHHHHHHhccCcccceeecCCCchhhhhHHhc
Confidence            57999999999999999999999999999999999999999999999999999999875 47788999999999999999


Q ss_pred             CCHHHHHHHHhcC
Q psy12891        498 GQADTVRELLSHV  510 (567)
Q Consensus       498 ~~~~~~~~Ll~~~  510 (567)
                      |+.||.-+|..+-
T Consensus       418 gh~eIa~mlYa~~  430 (452)
T KOG0514|consen  418 GHREIAVMLYAHM  430 (452)
T ss_pred             CchHHHHHHHHHH
Confidence            9999999998763

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.89  E-value=2.3e-22  Score=165.40  Aligned_cols=135  Identities=16%  Similarity=0.094  Sum_probs=115.1

Q ss_pred             CCCCCHHHHHHHcCcH----HHHHHHHHcCCCCCCccCcCCcHHHHHHHcCcHH---HHHHHHhccccccccc-ccCCcH
Q psy12891        419 VTEATPLQLAAEGGHA----NVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQ---VLEEMRSSKALNVYSK-KLGVTA  490 (567)
Q Consensus       419 ~~~~t~L~~A~~~~~~----~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~---~v~~Ll~~~~~~~~~~-~~g~t~  490 (567)
                      ..+.++||.|++.|+.    +++++|++.|++++.+|..|+||||+|+..|+.+   ++++|++.|++++.++ ..|.||
T Consensus        18 ~~~~~~l~~a~~~g~~~~l~~~~~~l~~~g~~~~~~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~Gadin~~d~~~g~Tp   97 (166)
T PHA02743         18 EDEQNTFLRICRTGNIYELMEVAPFISGDGHLLHRYDHHGRQCTHMVAWYDRANAVMKIELLVNMGADINARELGTGNTL   97 (166)
T ss_pred             cCCCcHHHHHHHcCCHHHHHHHHHHHhhcchhhhccCCCCCcHHHHHHHhCccCHHHHHHHHHHcCCCCCCCCCCCCCcH
Confidence            3566889999998887    5667788899999999999999999999988754   4889999999999888 589999


Q ss_pred             HHHHHHcCCHHHHHHHHh-cCCCCCCCCCCCCcccccccCCCCCCCHHHHHHHcCCHHHHHHHHhccCCccccccccC
Q psy12891        491 LHVAAYFGQADTVRELLS-HVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVRLLLNSAGVQVDAQTQEN  567 (567)
Q Consensus       491 l~~A~~~~~~~~~~~Ll~-~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~g~~~~~~~~~~  567 (567)
                      ||+|+..++.+++++|++ .+.+.             +..+..|.||||+|+..++.+++++|+++ |++++.++-+|
T Consensus        98 Lh~A~~~g~~~iv~~Ll~~~gad~-------------~~~d~~g~tpL~~A~~~~~~~iv~~Ll~~-ga~~~~~~~~~  161 (166)
T PHA02743         98 LHIAASTKNYELAEWLCRQLGVNL-------------GAINYQHETAYHIAYKMRDRRMMEILRAN-GAVCDDPLSIG  161 (166)
T ss_pred             HHHHHHhCCHHHHHHHHhccCCCc-------------cCcCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCCcccCC
Confidence            999999999999999995 55443             45678899999999999999999999986 99999887665

>KOG0514|consensus

Probab=99.87  E-value=5.9e-22  Score=168.94  Aligned_cols=163  Identities=26%  Similarity=0.295  Sum_probs=143.3

Q ss_pred             ccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCCCCHHHHHHHc-----CcHHHHHHHHHcCCCCCCc-c
Q psy12891        378 VTATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEG-----GHANVVRVLVKAGASCTDE-N  451 (567)
Q Consensus       378 ~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~-----~~~~~v~~Ll~~g~~~~~~-~  451 (567)
                      ++..|.+|.|+|||++...++++|+.|++.+..  ..++.+.-|+||+++++..     ...++|..|.+.| |+|.+ .
T Consensus       261 VNlaDsNGNTALHYsVSHaNF~VV~~LLDSgvC--~VD~qNrAGYtpiMLaALA~lk~~~d~~vV~~LF~mg-nVNaKAs  337 (452)
T KOG0514|consen  261 VNLADSNGNTALHYAVSHANFDVVSILLDSGVC--DVDQQNRAGYTPVMLAALAKLKQPADRTVVERLFKMG-DVNAKAS  337 (452)
T ss_pred             hhhhcCCCCeeeeeeecccchHHHHHHhccCcc--cccccccccccHHHHHHHHhhcchhhHHHHHHHHhcc-Ccchhhh
Confidence            466788999999999999999999999997654  5566667899999998853     4678999999876 67764 4


Q ss_pred             CcCCcHHHHHHHcCcHHHHHHHHhcccccccccccCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcccccccCCC
Q psy12891        452 KTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSE  531 (567)
Q Consensus       452 ~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~  531 (567)
                      ..|+|+||+|+.+|+.++|+.||..|++++..|.+|-|+|+.|+++||.|++++|+....            ++..+.|.
T Consensus       338 Q~gQTALMLAVSHGr~d~vk~LLacgAdVNiQDdDGSTALMCA~EHGhkEivklLLA~p~------------cd~sLtD~  405 (452)
T KOG0514|consen  338 QHGQTALMLAVSHGRVDMVKALLACGADVNIQDDDGSTALMCAAEHGHKEIVKLLLAVPS------------CDISLTDV  405 (452)
T ss_pred             hhcchhhhhhhhcCcHHHHHHHHHccCCCccccCCccHHHhhhhhhChHHHHHHHhccCc------------ccceeecC
Confidence            579999999999999999999999999999999999999999999999999999998632            33467799


Q ss_pred             CCCCHHHHHHHcCCHHHHHHHHhc
Q psy12891        532 SGMTPLHLAAYSGNENVVRLLLNS  555 (567)
Q Consensus       532 ~g~t~l~~A~~~~~~~~v~~Ll~~  555 (567)
                      +|.|+|.+|...||.+|.-+|..+
T Consensus       406 DgSTAl~IAleagh~eIa~mlYa~  429 (452)
T KOG0514|consen  406 DGSTALSIALEAGHREIAVMLYAH  429 (452)
T ss_pred             CCchhhhhHHhcCchHHHHHHHHH
Confidence            999999999999999999988764

>PHA02741 hypothetical protein; Provisional

Probab=99.87  E-value=1.8e-21  Score=161.18  Aligned_cols=127  Identities=17%  Similarity=0.179  Sum_probs=86.9

Q ss_pred             CCCCHHHHHHHcCcHHHHHHHHH------cCCCCCCccCcCCcHHHHHHHcCc----HHHHHHHHhcccccccccc-cCC
Q psy12891        420 TEATPLQLAAEGGHANVVRVLVK------AGASCTDENKTGFTAVHLAAQNGH----NQVLEEMRSSKALNVYSKK-LGV  488 (567)
Q Consensus       420 ~~~t~L~~A~~~~~~~~v~~Ll~------~g~~~~~~~~~g~t~l~~A~~~~~----~~~v~~Ll~~~~~~~~~~~-~g~  488 (567)
                      .|.||||+|++.|+.+++++|+.      .|++++.+|..|+||||+|+..|+    .+++++|++.|++++.++. .|+
T Consensus        20 ~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~in~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~gadin~~~~~~g~   99 (169)
T PHA02741         20 EGENFFHEAARCGCFDIIARFTPFIRGDCHAAALNATDDAGQMCIHIAAEKHEAQLAAEIIDHLIELGADINAQEMLEGD   99 (169)
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHHhccchhhhhhhccCCCCCcHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCCcCCCC
Confidence            56677777777777777776643      356677777777777777777776    4677777777777776663 677


Q ss_pred             cHHHHHHHcCCHHHHHHHHhc-CCCCCCCCCCCCcccccccCCCCCCCHHHHHHHcCCHHHHHHHHhccCCcc
Q psy12891        489 TALHVAAYFGQADTVRELLSH-VPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVRLLLNSAGVQV  560 (567)
Q Consensus       489 t~l~~A~~~~~~~~~~~Ll~~-~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~g~~~  560 (567)
                      ||||+|+..++.+++++|++. +.+.             +..|..|.|||++|+..++.+++++|++. ++..
T Consensus       100 TpLh~A~~~~~~~iv~~Ll~~~g~~~-------------~~~n~~g~tpL~~A~~~~~~~iv~~L~~~-~~~~  158 (169)
T PHA02741        100 TALHLAAHRRDHDLAEWLCCQPGIDL-------------HFCNADNKSPFELAIDNEDVAMMQILREI-VATS  158 (169)
T ss_pred             CHHHHHHHcCCHHHHHHHHhCCCCCC-------------CcCCCCCCCHHHHHHHCCCHHHHHHHHHH-HHHh
Confidence            777777777777777777763 3322             44566777777777777777777777763 4443

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.86  E-value=5.5e-21  Score=157.25  Aligned_cols=144  Identities=21%  Similarity=0.199  Sum_probs=65.9

Q ss_pred             CCCCCCcCcCCCCHHHHHHHcCCH----HHHHHHHHhCCCCccccCCCCCcHHHHHHHcCCHH---HHHHHHhcCCCccc
Q psy12891        341 GASIDATDDQGQKPIHVAAQNNFP----EVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVG---VIEELMKFDRSGVI  413 (567)
Q Consensus       341 g~~~~~~~~~g~t~L~~A~~~~~~----~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~---~~~~ll~~~~~~~~  413 (567)
                      |++++..+..+.+++|.|++.++.    +++++|.+.+.. ++..+..|+||||+|+..++.+   ++++|++.+.+.. 
T Consensus        10 ~~~~~~~~~~~~~~l~~a~~~g~~~~l~~~~~~l~~~g~~-~~~~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~Gadin-   87 (166)
T PHA02743         10 NLGAVEIDEDEQNTFLRICRTGNIYELMEVAPFISGDGHL-LHRYDHHGRQCTHMVAWYDRANAVMKIELLVNMGADIN-   87 (166)
T ss_pred             chHHhhhccCCCcHHHHHHHcCCHHHHHHHHHHHhhcchh-hhccCCCCCcHHHHHHHhCccCHHHHHHHHHHcCCCCC-
Confidence            444444444455555555555554    223333333222 2333444444444444443322   1334444333211 


Q ss_pred             ccCCCCCCCCHHHHHHHcCcHHHHHHHHH-cCCCCCCccCcCCcHHHHHHHcCcHHHHHHHHhcccccccccccC
Q psy12891        414 SARNRVTEATPLQLAAEGGHANVVRVLVK-AGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLG  487 (567)
Q Consensus       414 ~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g  487 (567)
                       ......|.||||+|+..++.+++++|++ .|++++.++..|.||||+|+..++.+++++|+++|++.+.++..|
T Consensus        88 -~~d~~~g~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~  161 (166)
T PHA02743         88 -ARELGTGNTLLHIAASTKNYELAEWLCRQLGVNLGAINYQHETAYHIAYKMRDRRMMEILRANGAVCDDPLSIG  161 (166)
T ss_pred             -CCCCCCCCcHHHHHHHhCCHHHHHHHHhccCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcccCC
Confidence             1111234455555555555555555553 455555555555555555555555555555555555555444333

>KOG0505|consensus

Probab=99.86  E-value=9.2e-22  Score=177.26  Aligned_cols=229  Identities=25%  Similarity=0.312  Sum_probs=172.5

Q ss_pred             cHHHHHHhcCCHHHHHHHHHhccCcchhhhhhcCCCCCChHHHHHHhcCcHHHHHHHHhCCCCCCccCCCCCCHHHHHHH
Q psy12891        192 TAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAE  271 (567)
Q Consensus       192 ~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~  271 (567)
                      -.+.-|+..+..+-++.|+..+.++      +..+.+|.|+||.+|...+.+||++|+++|++++..|..++||+|.|+.
T Consensus        42 a~~l~A~~~~d~~ev~~ll~~ga~~------~~~n~DglTalhq~~id~~~e~v~~l~e~ga~Vn~~d~e~wtPlhaaas  115 (527)
T KOG0505|consen   42 AVFLEACSRGDLEEVRKLLNRGASP------NLCNVDGLTALHQACIDDNLEMVKFLVENGANVNAQDNEGWTPLHAAAS  115 (527)
T ss_pred             HHHHhccccccHHHHHHHhccCCCc------cccCCccchhHHHHHhcccHHHHHHHHHhcCCccccccccCCcchhhcc
Confidence            3566678888888888888887554      6777888888888888888888888888888888887776666655544


Q ss_pred             cCCeeeeccccccccccccCCCCCCCCCCCccccchhhhhhhhhhcCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCcCC
Q psy12891        272 HGYLKVSSGKSLKHSVMSFRLPPHNIIPNGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQG  351 (567)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~g  351 (567)
                                                                              .|+..++++|+.+|+++...+..|
T Consensus       116 --------------------------------------------------------cg~~~i~~~li~~gA~~~avNsdg  139 (527)
T KOG0505|consen  116 --------------------------------------------------------CGYLNIVEYLIQHGANLLAVNSDG  139 (527)
T ss_pred             --------------------------------------------------------cccHHHHHHHHHhhhhhhhccCCC
Confidence                                                                    456788889999999988888888


Q ss_pred             CCHHHHHHHcCCHHHHHHHHHhCCCCccccCCCCCcHHHHHHHcCC---HHHHHHHHhcCCCcccccCCCCCCCCHHHHH
Q psy12891        352 QKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGS---VGVIEELMKFDRSGVISARNRVTEATPLQLA  428 (567)
Q Consensus       352 ~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~---~~~~~~ll~~~~~~~~~~~~~~~~~t~L~~A  428 (567)
                      ..|+..+...-..+++..-......          + +..+-....   .+=+...+..+......   ...|.|.||.|
T Consensus       140 ~~P~dl~e~ea~~~~l~~~~~r~gi----------~-iea~R~~~e~~ml~D~~q~l~~G~~~d~~---~~rG~T~lHvA  205 (527)
T KOG0505|consen  140 NMPYDLAEDEATLDVLETEMARQGI----------D-IEAARKAEEQTMLDDARQWLNAGAELDAR---HARGATALHVA  205 (527)
T ss_pred             CCccccccCcchhHHHHHHHHHhcc----------c-HHHHhhhhHHHHHHHHHHHHhcccccccc---ccccchHHHHH
Confidence            8888877655555554433332221          1 111111111   11122333344443322   22488999999


Q ss_pred             HHcCcHHHHHHHHHcCCCCCCccCcCCcHHHHHHHcCcHHHHHHHHhcccccccccccCCcHHHHHHH
Q psy12891        429 AEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLGVTALHVAAY  496 (567)
Q Consensus       429 ~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~  496 (567)
                      +..|..++.++|+++|.+++.+|.+|+||||.|+..|..++.++|+++|++.+.....|.|||.+|..
T Consensus       206 aa~Gy~e~~~lLl~ag~~~~~~D~dgWtPlHAAA~Wg~~~~~elL~~~ga~~d~~t~~g~~p~dv~de  273 (527)
T KOG0505|consen  206 AANGYTEVAALLLQAGYSVNIKDYDGWTPLHAAAHWGQEDACELLVEHGADMDAKTKMGETPLDVADE  273 (527)
T ss_pred             HhhhHHHHHHHHHHhccCcccccccCCCcccHHHHhhhHhHHHHHHHhhcccchhhhcCCCCccchhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999874

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.86  E-value=1.6e-20  Score=165.94  Aligned_cols=156  Identities=14%  Similarity=0.107  Sum_probs=117.3

Q ss_pred             cCCCCCc-HHHHHHHcCCHHHHHHHHhcCCCcccccC-CCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCc-cCcCCcH
Q psy12891        381 TTKDGNT-CAHIAAMQGSVGVIEELMKFDRSGVISAR-NRVTEATPLQLAAEGGHANVVRVLVKAGASCTDE-NKTGFTA  457 (567)
Q Consensus       381 ~~~~~~~-~l~~a~~~~~~~~~~~ll~~~~~~~~~~~-~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~~g~t~  457 (567)
                      .+..+++ +|+.|+..++.+++++|+++|++...... .+..|.||||+|+..++.+++++|+++|+++|.. +..|.||
T Consensus        28 ~d~~~~~~lL~~A~~~~~~eivk~LL~~GAdiN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~GADVN~~~~~~g~Tp  107 (300)
T PHA02884         28 KNKICIANILYSSIKFHYTDIIDAILKLGADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGADVNRYAEEAKITP  107 (300)
T ss_pred             cCcCCCCHHHHHHHHcCCHHHHHHHHHCCCCccccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcCcccCCCCCCH
Confidence            4445554 45555666778888888887776443221 2346888999998888899999999999988875 4578899


Q ss_pred             HHHHHHcCcHHHHHHHHhcccccccccccCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcccccccCCCCCCCHH
Q psy12891        458 VHLAAQNGHNQVLEEMRSSKALNVYSKKLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPL  537 (567)
Q Consensus       458 l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l  537 (567)
                      ||+|+..++.+++++|++.|++++.+|..|+||||+|+..++.+++..+....                  .+..+.+|+
T Consensus       108 Lh~Aa~~~~~eivklLL~~GAdin~kd~~G~TpL~~A~~~~~~~~~~~~~~~~------------------~~~~~~~~~  169 (300)
T PHA02884        108 LYISVLHGCLKCLEILLSYGADINIQTNDMVTPIELALMICNNFLAFMICDNE------------------ISNFYKHPK  169 (300)
T ss_pred             HHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHhCChhHHHHhcCCc------------------ccccccChh
Confidence            99999889999999999999888888888889999988888888776664321                  245567787


Q ss_pred             HHHHHcCCHHHHHHHHhccCC
Q psy12891        538 HLAAYSGNENVVRLLLNSAGV  558 (567)
Q Consensus       538 ~~A~~~~~~~~v~~Ll~~~g~  558 (567)
                      +++   ++.+++++|+.+ ++
T Consensus       170 ~~~---~n~ei~~~Lish-~v  186 (300)
T PHA02884        170 KIL---INFDILKILVSH-FI  186 (300)
T ss_pred             hhh---ccHHHHHHHHHH-HH
Confidence            765   478888888886 55

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.86  E-value=1e-20  Score=167.10  Aligned_cols=132  Identities=17%  Similarity=0.206  Sum_probs=102.3

Q ss_pred             HHHHHhcCCCCCCC----CCCCChHHHHHHHhCCHHHHHHHHHcCCCCCCC-CCCCCChhHHHHhcCchhHHHHHHHhhh
Q psy12891         53 ALMLLKSGAGPNLT----TDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYK-NKIGETPLHLASRNCKAEVVDLLIQFVQ  127 (567)
Q Consensus        53 ~~~Ll~~g~~~~~~----~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~-~~~g~t~L~~A~~~~~~~iv~~Ll~~~~  127 (567)
                      +++|+++|+|+|.+    +..|.||||+|+..|+.+++++|+++||+++.+ +..|.||||+|+..++.+++++|+++|+
T Consensus        49 vk~LL~~GAdiN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~GADVN~~~~~~g~TpLh~Aa~~~~~eivklLL~~GA  128 (300)
T PHA02884         49 IDAILKLGADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGADVNRYAEEAKITPLYISVLHGCLKCLEILLSYGA  128 (300)
T ss_pred             HHHHHHCCCCccccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCC
Confidence            33577778888776    358999999999999999999999999999986 4679999999999999999999999998


Q ss_pred             hhhhhHHhhhhcccccccccHHHHHHHhCCcccccccccccHHHHHHHHHcCCCccccccCCCccHHHHHHhcCCHHHHH
Q psy12891        128 NISQEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGADVSLQTKQNHETAFHYCAVAGNNDVLT  207 (567)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~l~~a~~~~~~~~~~  207 (567)
                      +         ++.++..|.|||++|+..++.+           ++.++.  |...    ...+.+|++++   ++.++++
T Consensus       129 d---------in~kd~~G~TpL~~A~~~~~~~-----------~~~~~~--~~~~----~~~~~~~~~~~---~n~ei~~  179 (300)
T PHA02884        129 D---------INIQTNDMVTPIELALMICNNF-----------LAFMIC--DNEI----SNFYKHPKKIL---INFDILK  179 (300)
T ss_pred             C---------CCCCCCCCCCHHHHHHHhCChh-----------HHHHhc--CCcc----cccccChhhhh---ccHHHHH
Confidence            8         6788899999999998855443           344443  3322    12235676654   3678888


Q ss_pred             HHHHhc
Q psy12891        208 GMLEQM  213 (567)
Q Consensus       208 ~Ll~~~  213 (567)
                      .|+.+.
T Consensus       180 ~Lish~  185 (300)
T PHA02884        180 ILVSHF  185 (300)
T ss_pred             HHHHHH
Confidence            888764

>PHA02741 hypothetical protein; Provisional

Probab=99.86  E-value=1.2e-20  Score=156.38  Aligned_cols=132  Identities=19%  Similarity=0.194  Sum_probs=105.0

Q ss_pred             cCCCCCcHHHHHHHcCCHHHHHHHHhcC---CCcccccCCCCCCCCHHHHHHHcCc----HHHHHHHHHcCCCCCCccC-
Q psy12891        381 TTKDGNTCAHIAAMQGSVGVIEELMKFD---RSGVISARNRVTEATPLQLAAEGGH----ANVVRVLVKAGASCTDENK-  452 (567)
Q Consensus       381 ~~~~~~~~l~~a~~~~~~~~~~~ll~~~---~~~~~~~~~~~~~~t~L~~A~~~~~----~~~v~~Ll~~g~~~~~~~~-  452 (567)
                      .+..|.||||+|+..|+.++++.|+...   ..+......+..|.||||+|+..|+    .+++++|+++|++++.++. 
T Consensus        17 ~~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~in~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~gadin~~~~~   96 (169)
T PHA02741         17 KNSEGENFFHEAARCGCFDIIARFTPFIRGDCHAAALNATDDAGQMCIHIAAEKHEAQLAAEIIDHLIELGADINAQEML   96 (169)
T ss_pred             cccCCCCHHHHHHHcCCHHHHHHHHHHhccchhhhhhhccCCCCCcHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCCcC
Confidence            4556667777777777777776664321   1112234455578899999999888    5889999999999999885 


Q ss_pred             cCCcHHHHHHHcCcHHHHHHHHh-cccccccccccCCcHHHHHHHcCCHHHHHHHHhcCCC
Q psy12891        453 TGFTAVHLAAQNGHNQVLEEMRS-SKALNVYSKKLGVTALHVAAYFGQADTVRELLSHVPG  512 (567)
Q Consensus       453 ~g~t~l~~A~~~~~~~~v~~Ll~-~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~  512 (567)
                      .|+||||+|+..++.+++++|++ .|++++.+|..|+||||+|+..++.+++++|++....
T Consensus        97 ~g~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~n~~g~tpL~~A~~~~~~~iv~~L~~~~~~  157 (169)
T PHA02741         97 EGDTALHLAAHRRDHDLAEWLCCQPGIDLHFCNADNKSPFELAIDNEDVAMMQILREIVAT  157 (169)
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCCHHHHHHHCCCHHHHHHHHHHHHH
Confidence            89999999999999999999997 5899999999999999999999999999999987543

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.84  E-value=6.6e-21  Score=155.90  Aligned_cols=129  Identities=19%  Similarity=0.191  Sum_probs=87.3

Q ss_pred             CCCCCCCHHHHHHHcCcHHHHHHHHHcCC--C-----CCCccCcCCcHHHHHHHcCcH---HHHHHHHhccccccccc-c
Q psy12891        417 NRVTEATPLQLAAEGGHANVVRVLVKAGA--S-----CTDENKTGFTAVHLAAQNGHN---QVLEEMRSSKALNVYSK-K  485 (567)
Q Consensus       417 ~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~--~-----~~~~~~~g~t~l~~A~~~~~~---~~v~~Ll~~~~~~~~~~-~  485 (567)
                      .+..|.||||+|++.|+.  ++++...+.  +     ++..|..|+||||+|+..++.   +++++|++.|++++.++ .
T Consensus        13 ~d~~g~tpLh~A~~~g~~--~~l~~~~~~~~~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~gadin~~~~~   90 (154)
T PHA02736         13 PDIEGENILHYLCRNGGV--TDLLAFKNAISDENRYLVLEYNRHGKQCVHIVSNPDKADPQEKLKLLMEWGADINGKERV   90 (154)
T ss_pred             cCCCCCCHHHHHHHhCCH--HHHHHHHHHhcchhHHHHHHhcCCCCEEEEeecccCchhHHHHHHHHHHcCCCccccCCC
Confidence            344677777777777763  233322221  1     223567778888888877765   35777778888777776 4


Q ss_pred             cCCcHHHHHHHcCCHHHHHHHHhc-CCCCCCCCCCCCcccccccCCCCCCCHHHHHHHcCCHHHHHHHHhccCCccc
Q psy12891        486 LGVTALHVAAYFGQADTVRELLSH-VPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVRLLLNSAGVQVD  561 (567)
Q Consensus       486 ~g~t~l~~A~~~~~~~~~~~Ll~~-~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~g~~~~  561 (567)
                      .|+||||+|+..++.+++++|+++ +.+.             +..+..|.||||+|+..|+.+++++|+++ |++++
T Consensus        91 ~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d~-------------n~~~~~g~tpL~~A~~~~~~~i~~~Ll~~-ga~~~  153 (154)
T PHA02736         91 FGNTPLHIAVYTQNYELATWLCNQPGVNM-------------EILNYAFKTPYYVACERHDAKMMNILRAK-GAQCK  153 (154)
T ss_pred             CCCcHHHHHHHhCCHHHHHHHHhCCCCCC-------------ccccCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCC
Confidence            778888888888888888887764 3332             45567788888888888888888888875 77765

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.83  E-value=3.3e-20  Score=151.76  Aligned_cols=134  Identities=13%  Similarity=0.070  Sum_probs=100.8

Q ss_pred             ccCCCCCcHHHHHHHcCCHHHHHHHHhcC--CCcccccCCCCCCCCHHHHHHHcCcH---HHHHHHHHcCCCCCCcc-Cc
Q psy12891        380 ATTKDGNTCAHIAAMQGSVGVIEELMKFD--RSGVISARNRVTEATPLQLAAEGGHA---NVVRVLVKAGASCTDEN-KT  453 (567)
Q Consensus       380 ~~~~~~~~~l~~a~~~~~~~~~~~ll~~~--~~~~~~~~~~~~~~t~L~~A~~~~~~---~~v~~Ll~~g~~~~~~~-~~  453 (567)
                      ..+..|.||||+|+..|+...+.......  .........+..|.||||+|+..|+.   +++++|+++|++++.++ ..
T Consensus        12 ~~d~~g~tpLh~A~~~g~~~~l~~~~~~~~~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~gadin~~~~~~   91 (154)
T PHA02736         12 EPDIEGENILHYLCRNGGVTDLLAFKNAISDENRYLVLEYNRHGKQCVHIVSNPDKADPQEKLKLLMEWGADINGKERVF   91 (154)
T ss_pred             hcCCCCCCHHHHHHHhCCHHHHHHHHHHhcchhHHHHHHhcCCCCEEEEeecccCchhHHHHHHHHHHcCCCccccCCCC
Confidence            34555666666666666522111111100  01111223345788999999999886   46889999999999988 48


Q ss_pred             CCcHHHHHHHcCcHHHHHHHHh-cccccccccccCCcHHHHHHHcCCHHHHHHHHhcCCCC
Q psy12891        454 GFTAVHLAAQNGHNQVLEEMRS-SKALNVYSKKLGVTALHVAAYFGQADTVRELLSHVPGT  513 (567)
Q Consensus       454 g~t~l~~A~~~~~~~~v~~Ll~-~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~  513 (567)
                      |+||||+|+..++.+++++|++ .|++++.+|..|+||||+|+..++.+++++|++++++.
T Consensus        92 g~T~Lh~A~~~~~~~i~~~Ll~~~g~d~n~~~~~g~tpL~~A~~~~~~~i~~~Ll~~ga~~  152 (154)
T PHA02736         92 GNTPLHIAVYTQNYELATWLCNQPGVNMEILNYAFKTPYYVACERHDAKMMNILRAKGAQC  152 (154)
T ss_pred             CCcHHHHHHHhCCHHHHHHHHhCCCCCCccccCCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            9999999999999999999998 48999999999999999999999999999999987653

>KOG0512|consensus

Probab=99.82  E-value=3e-19  Score=135.81  Aligned_cols=141  Identities=25%  Similarity=0.237  Sum_probs=121.4

Q ss_pred             HHHHHHcCCHHHHHHHHHhCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCCCCHHHHHHHcCcH
Q psy12891        355 IHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHA  434 (567)
Q Consensus       355 L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~~~~  434 (567)
                      +..|+..+....|+.|++..+..++.+|.++.||||.|+++|+.++++.|+..+++..   .....|.||||.||++++.
T Consensus        67 ~lwaae~nrl~eV~~lL~e~an~vNtrD~D~YTpLHRAaYn~h~div~~ll~~gAn~~---a~T~~GWTPLhSAckWnN~  143 (228)
T KOG0512|consen   67 LLWAAEKNRLTEVQRLLSEKANHVNTRDEDEYTPLHRAAYNGHLDIVHELLLSGANKE---AKTNEGWTPLHSACKWNNF  143 (228)
T ss_pred             HHHHHhhccHHHHHHHHHhccccccccccccccHHHHHHhcCchHHHHHHHHccCCcc---cccccCccchhhhhcccch
Confidence            5567888899999999999999999999999999999999999999999998877643   3344899999999999999


Q ss_pred             HHHHHHHHcCCCCCCccCcCCcHHHHHHHcCcHH-HHHHHH-hcccccccccccCCcHHHHHHHcC
Q psy12891        435 NVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQ-VLEEMR-SSKALNVYSKKLGVTALHVAAYFG  498 (567)
Q Consensus       435 ~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~-~v~~Ll-~~~~~~~~~~~~g~t~l~~A~~~~  498 (567)
                      +++.+|+++|+|+|+......||||+|+...+.. .+.+|+ ..+..+..++..+.||+.+|-+.+
T Consensus       144 ~va~~LLqhgaDVnA~t~g~ltpLhlaa~~rn~r~t~~~Ll~dryi~pg~~nn~eeta~~iARRT~  209 (228)
T KOG0512|consen  144 EVAGRLLQHGADVNAQTKGLLTPLHLAAGNRNSRDTLELLLHDRYIHPGLKNNLEETAFDIARRTS  209 (228)
T ss_pred             hHHHHHHhccCcccccccccchhhHHhhcccchHHHHHHHhhccccChhhhcCccchHHHHHHHhh
Confidence            9999999999999999999999999999887654 456555 445567778888999999998654

>KOG3676|consensus

Probab=99.81  E-value=1e-18  Score=166.03  Aligned_cols=193  Identities=21%  Similarity=0.285  Sum_probs=163.4

Q ss_pred             CCCHHHHHHHcCcHHHHHHHHHcC---------CCCCCcCcCCCCHHHHHHHc---CCHHHHHHHHHhCCCCccc----c
Q psy12891        318 KQTPLHLAAEAGQLQVCKLLLDLG---------ASIDATDDQGQKPIHVAAQN---NFPEVAQIFLRAHPSLVTA----T  381 (567)
Q Consensus       318 ~~t~L~~a~~~~~~~~v~~Ll~~g---------~~~~~~~~~g~t~L~~A~~~---~~~~~~~~Ll~~~~~~~~~----~  381 (567)
                      .+.++..+...+.++...-++..+         .+++.+...|.|.||.|..+   ++.++++.|++..+.+++.    .
T Consensus       101 d~~~~~~~~~~~~l~~l~~l~~~~~~~k~r~~~w~~~~RGa~GET~Lh~~lL~~~~~~n~la~~LL~~~p~lind~~~~e  180 (782)
T KOG3676|consen  101 DRDALFIADSEGALSDLDGLLKFLRKSKYRLTDWKLNERGATGETLLHKALLNLSDGHNELARVLLEIFPKLINDIYTSE  180 (782)
T ss_pred             chhhhhhccccccHHHHhccchhhhhhhhhhhhhccccccchhhhHHHHHHhcCchhHHHHHHHHHHHhHHHhhhhhhhH
Confidence            336677777777777777776655         66777888999999999974   4568999999887765443    2


Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHhcCCCccc-----------ccCC---------CCCCCCHHHHHHHcCcHHHHHHHH
Q psy12891        382 TKDGNTCAHIAAMQGSVGVIEELMKFDRSGVI-----------SARN---------RVTEATPLQLAAEGGHANVVRVLV  441 (567)
Q Consensus       382 ~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~-----------~~~~---------~~~~~t~L~~A~~~~~~~~v~~Ll  441 (567)
                      ...|.||||.|+.+.+.++|++|++.+++-.-           ....         -..|..||.+|+-.++.+++++|+
T Consensus       181 eY~GqSaLHiAIv~~~~~~V~lLl~~gADV~aRa~G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrlLl  260 (782)
T KOG3676|consen  181 EYYGQSALHIAIVNRDAELVRLLLAAGADVHARACGAFFCPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVRLLL  260 (782)
T ss_pred             hhcCcchHHHHHHhccHHHHHHHHHcCCchhhHhhccccCcccccccccccCCcceeeeccCchHHHHHcCCHHHHHHHH
Confidence            34699999999999999999999998876321           1011         246789999999999999999999


Q ss_pred             HcCCCCCCccCcCCcHHHHHHHcCcHHHHHHHHhcccc--cccccccCCcHHHHHHHcCCHHHHHHHHhcC
Q psy12891        442 KAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKAL--NVYSKKLGVTALHVAAYFGQADTVRELLSHV  510 (567)
Q Consensus       442 ~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~--~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~  510 (567)
                      ++|||++.+|+.|+|.||+.+..-..+|..+++++|+.  ...++..|.|||.+|++-|+.+|.+.+++..
T Consensus       261 ~~gAd~~aqDS~GNTVLH~lVi~~~~~My~~~L~~ga~~l~~v~N~qgLTPLtLAaklGk~emf~~ile~~  331 (782)
T KOG3676|consen  261 AHGADPNAQDSNGNTVLHMLVIHFVTEMYDLALELGANALEHVRNNQGLTPLTLAAKLGKKEMFQHILERR  331 (782)
T ss_pred             hcCCCCCccccCCChHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCChHHHHHHhhhHHHHHHHHHhh
Confidence            99999999999999999999999999999999999998  8899999999999999999999999999984

>KOG0512|consensus

Probab=99.80  E-value=7.4e-19  Score=133.68  Aligned_cols=146  Identities=22%  Similarity=0.179  Sum_probs=124.1

Q ss_pred             cHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCccCcCCcHHHHHHHcCc
Q psy12891        387 TCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGH  466 (567)
Q Consensus       387 ~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~  466 (567)
                      ..+.+|+..+....|+.|++-.++  ..+..+.+|.||||-|+.+|+.++|+.|+..||+++.+...|+||||-||..++
T Consensus        65 rl~lwaae~nrl~eV~~lL~e~an--~vNtrD~D~YTpLHRAaYn~h~div~~ll~~gAn~~a~T~~GWTPLhSAckWnN  142 (228)
T KOG0512|consen   65 RLLLWAAEKNRLTEVQRLLSEKAN--HVNTRDEDEYTPLHRAAYNGHLDIVHELLLSGANKEAKTNEGWTPLHSACKWNN  142 (228)
T ss_pred             HHHHHHHhhccHHHHHHHHHhccc--cccccccccccHHHHHHhcCchHHHHHHHHccCCcccccccCccchhhhhcccc
Confidence            356789999999999999987655  566777799999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcccccccccccCCcHHHHHHHcCCHHH-HHHHHhcCCCCCCCCCCCCcccccccCCCCCCCHHHHHHHcCC
Q psy12891        467 NQVLEEMRSSKALNVYSKKLGVTALHVAAYFGQADT-VRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGN  545 (567)
Q Consensus       467 ~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~-~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~  545 (567)
                      .+++-.||++|++++.......||||+|+.+.+..+ +.+|+.. +.+           .+......+.||+.+|-+-+.
T Consensus       143 ~~va~~LLqhgaDVnA~t~g~ltpLhlaa~~rn~r~t~~~Ll~d-ryi-----------~pg~~nn~eeta~~iARRT~~  210 (228)
T KOG0512|consen  143 FEVAGRLLQHGADVNAQTKGLLTPLHLAAGNRNSRDTLELLLHD-RYI-----------HPGLKNNLEETAFDIARRTSM  210 (228)
T ss_pred             hhHHHHHHhccCcccccccccchhhHHhhcccchHHHHHHHhhc-ccc-----------ChhhhcCccchHHHHHHHhhh
Confidence            999999999999999998889999999999877544 4554432 221           124457788999999988765


Q ss_pred             H
Q psy12891        546 E  546 (567)
Q Consensus       546 ~  546 (567)
                      .
T Consensus       211 s  211 (228)
T KOG0512|consen  211 S  211 (228)
T ss_pred             h
Confidence            3

>KOG0195|consensus

Probab=99.77  E-value=1.3e-18  Score=143.97  Aligned_cols=135  Identities=27%  Similarity=0.370  Sum_probs=85.0

Q ss_pred             cCCCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCccCcCCcHHHHHHHcCcHHHHHHHHhcccccccccccCCcHHHHH
Q psy12891        415 ARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLGVTALHVA  494 (567)
Q Consensus       415 ~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A  494 (567)
                      +..+..|.+|||+|++.|+..+++.|+..|+.+|..+....||||+|+..|+.++|+.|++..++++..+..|+||||||
T Consensus        28 n~gddhgfsplhwaakegh~aivemll~rgarvn~tnmgddtplhlaaahghrdivqkll~~kadvnavnehgntplhya  107 (448)
T KOG0195|consen   28 NVGDDHGFSPLHWAAKEGHVAIVEMLLSRGARVNSTNMGDDTPLHLAAAHGHRDIVQKLLSRKADVNAVNEHGNTPLHYA  107 (448)
T ss_pred             ccccccCcchhhhhhhcccHHHHHHHHhcccccccccCCCCcchhhhhhcccHHHHHHHHHHhcccchhhccCCCchhhh
Confidence            33444666777777777777777777777777777666666777777777777777777777777777777777777777


Q ss_pred             HHcCCHHHHHHHHhcCCCCCCCCCCCCcccccccCCCCCCCHHHHHHHcCCHHHHHHHHhccCCccccc
Q psy12891        495 AYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVRLLLNSAGVQVDAQ  563 (567)
Q Consensus       495 ~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~g~~~~~~  563 (567)
                      |..|...+.+-|+..++..             ++.++.|.|||+.|--.-. +.+.-+.++.|-+||.+
T Consensus       108 cfwgydqiaedli~~ga~v-------------~icnk~g~tpldkakp~l~-~~l~e~aek~gq~~nri  162 (448)
T KOG0195|consen  108 CFWGYDQIAEDLISCGAAV-------------NICNKKGMTPLDKAKPMLK-NTLLEIAEKHGQSPNRI  162 (448)
T ss_pred             hhhcHHHHHHHHHhcccee-------------eecccCCCCchhhhchHHH-HHHHHHHHHhCCCCCcc
Confidence            7777777777777665533             5566667777666632211 22222333446666543

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.76  E-value=4.5e-18  Score=124.79  Aligned_cols=89  Identities=37%  Similarity=0.473  Sum_probs=46.3

Q ss_pred             HHHHHHcCcHHHHHHHHhcccccccccccCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcccccccCCCCCCCHH
Q psy12891        458 VHLAAQNGHNQVLEEMRSSKALNVYSKKLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPL  537 (567)
Q Consensus       458 l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l  537 (567)
                      ||+|++.|+.+++++|++.+.+.+.    |.||||+|+..|+.+++++|++++++.             +..|..|.|||
T Consensus         1 L~~A~~~~~~~~~~~ll~~~~~~~~----~~~~l~~A~~~~~~~~~~~Ll~~g~~~-------------~~~~~~g~t~L   63 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEKGADINL----GNTALHYAAENGNLEIVKLLLENGADI-------------NSQDKNGNTAL   63 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHTTSTTTS----SSBHHHHHHHTTTHHHHHHHHHTTTCT-------------T-BSTTSSBHH
T ss_pred             CHHHHHcCCHHHHHHHHHCcCCCCC----CCCHHHHHHHcCCHHHHHHHHHhcccc-------------cccCCCCCCHH
Confidence            3455555555555555555443333    445555555555555555555554433             23345555666


Q ss_pred             HHHHHcCCHHHHHHHHhccCCcccccc
Q psy12891        538 HLAAYSGNENVVRLLLNSAGVQVDAQT  564 (567)
Q Consensus       538 ~~A~~~~~~~~v~~Ll~~~g~~~~~~~  564 (567)
                      |+|+.+|+.+++++|+++ |++||.+|
T Consensus        64 ~~A~~~~~~~~~~~Ll~~-g~~~~~~n   89 (89)
T PF12796_consen   64 HYAAENGNLEIVKLLLEH-GADVNIRN   89 (89)
T ss_dssp             HHHHHTTHHHHHHHHHHT-TT-TTSS-
T ss_pred             HHHHHcCCHHHHHHHHHc-CCCCCCcC
Confidence            666666666666666654 66666554

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>KOG3676|consensus

Probab=99.76  E-value=5.4e-18  Score=161.23  Aligned_cols=192  Identities=19%  Similarity=0.208  Sum_probs=157.8

Q ss_pred             CHHHHHHHcCCHHHHHHHHHhC--------CCCccccCCCCCcHHHHHHHc---CCHHHHHHHHhcCCCcc--cccCCCC
Q psy12891        353 KPIHVAAQNNFPEVAQIFLRAH--------PSLVTATTKDGNTCAHIAAMQ---GSVGVIEELMKFDRSGV--ISARNRV  419 (567)
Q Consensus       353 t~L~~A~~~~~~~~~~~Ll~~~--------~~~~~~~~~~~~~~l~~a~~~---~~~~~~~~ll~~~~~~~--~~~~~~~  419 (567)
                      .++..+...+..+....++...        ....+.+..-|.|.||.|..+   ++.++++.|++..+.-.  +......
T Consensus       103 ~~~~~~~~~~~l~~l~~l~~~~~~~k~r~~~w~~~~RGa~GET~Lh~~lL~~~~~~n~la~~LL~~~p~lind~~~~eeY  182 (782)
T KOG3676|consen  103 DALFIADSEGALSDLDGLLKFLRKSKYRLTDWKLNERGATGETLLHKALLNLSDGHNELARVLLEIFPKLINDIYTSEEY  182 (782)
T ss_pred             hhhhhccccccHHHHhccchhhhhhhhhhhhhccccccchhhhHHHHHHhcCchhHHHHHHHHHHHhHHHhhhhhhhHhh
Confidence            5666666666666666555443        122455667899999999873   45588999988655322  2233456


Q ss_pred             CCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcc-----------------------CcCCcHHHHHHHcCcHHHHHHHHhc
Q psy12891        420 TEATPLQLAAEGGHANVVRVLVKAGASCTDEN-----------------------KTGFTAVHLAAQNGHNQVLEEMRSS  476 (567)
Q Consensus       420 ~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~-----------------------~~g~t~l~~A~~~~~~~~v~~Ll~~  476 (567)
                      .|.||||.|+.+.+.++|++|++.|||++++-                       ..|..||-+|+..++.+++++|+++
T Consensus       183 ~GqSaLHiAIv~~~~~~V~lLl~~gADV~aRa~G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrlLl~~  262 (782)
T KOG3676|consen  183 YGQSALHIAIVNRDAELVRLLLAAGADVHARACGAFFCPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVRLLLAH  262 (782)
T ss_pred             cCcchHHHHHHhccHHHHHHHHHcCCchhhHhhccccCcccccccccccCCcceeeeccCchHHHHHcCCHHHHHHHHhc
Confidence            89999999999999999999999999998631                       1478999999999999999999999


Q ss_pred             ccccccccccCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcccccccCCCCCCCHHHHHHHcCCHHHHHHHHhc
Q psy12891        477 KALNVYSKKLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVRLLLNS  555 (567)
Q Consensus       477 ~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~  555 (567)
                      |||++..|+.|+|.||..+..-..+|..++++++++.           +.++++..|.|||..|++.|..+|.+.+++.
T Consensus       263 gAd~~aqDS~GNTVLH~lVi~~~~~My~~~L~~ga~~-----------l~~v~N~qgLTPLtLAaklGk~emf~~ile~  330 (782)
T KOG3676|consen  263 GADPNAQDSNGNTVLHMLVIHFVTEMYDLALELGANA-----------LEHVRNNQGLTPLTLAAKLGKKEMFQHILER  330 (782)
T ss_pred             CCCCCccccCCChHHHHHHHHHHHHHHHHHHhcCCCc-----------cccccccCCCChHHHHHHhhhHHHHHHHHHh
Confidence            9999999999999999999999999999999998871           2378899999999999999999999999986

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.74  E-value=2.2e-17  Score=121.08  Aligned_cols=87  Identities=30%  Similarity=0.433  Sum_probs=42.8

Q ss_pred             HHHHHHcCCHHHHHHHHhcCCCcccccCCCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCccCcCCcHHHHHHHcCcHH
Q psy12891        389 AHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQ  468 (567)
Q Consensus       389 l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~  468 (567)
                      ||.|++.++.+++++|++.+.+...       |.||||+|+..|+.+++++|+++|++++.++..|+||||+|+..|+.+
T Consensus         1 L~~A~~~~~~~~~~~ll~~~~~~~~-------~~~~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~   73 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEKGADINL-------GNTALHYAAENGNLEIVKLLLENGADINSQDKNGNTALHYAAENGNLE   73 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHTTSTTTS-------SSBHHHHHHHTTTHHHHHHHHHTTTCTT-BSTTSSBHHHHHHHTTHHH
T ss_pred             CHHHHHcCCHHHHHHHHHCcCCCCC-------CCCHHHHHHHcCCHHHHHHHHHhcccccccCCCCCCHHHHHHHcCCHH
Confidence            3445555555555555543322111       345555555555555555555555555555555555555555555555


Q ss_pred             HHHHHHhccccccc
Q psy12891        469 VLEEMRSSKALNVY  482 (567)
Q Consensus       469 ~v~~Ll~~~~~~~~  482 (567)
                      ++++|+++|++++.
T Consensus        74 ~~~~Ll~~g~~~~~   87 (89)
T PF12796_consen   74 IVKLLLEHGADVNI   87 (89)
T ss_dssp             HHHHHHHTTT-TTS
T ss_pred             HHHHHHHcCCCCCC
Confidence            55555555554443

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.73  E-value=1.3e-16  Score=126.86  Aligned_cols=122  Identities=41%  Similarity=0.559  Sum_probs=104.5

Q ss_pred             CCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCccCcCCcHHHHHHHcCcHHHHHHHHhcccccccccccCCcHHHHHHHcC
Q psy12891        419 VTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLGVTALHVAAYFG  498 (567)
Q Consensus       419 ~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~  498 (567)
                      ..|.|||++|++.++.+++++|++.|.+.+..+..|.||+++|+..++.+++++|++.++.++..+..|.||+|+|+..+
T Consensus         5 ~~g~t~l~~a~~~~~~~~i~~li~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~   84 (126)
T cd00204           5 EDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADVNARDKDGNTPLHLAARNG   84 (126)
T ss_pred             cCCCCHHHHHHHcCcHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcC
Confidence            46789999999999999999999999888888888999999999999999999999998877877888889999999999


Q ss_pred             CHHHHHHHHhcCCCCCCCCCCCCcccccccCCCCCCCHHHHHHHcCCHHHHHHHH
Q psy12891        499 QADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVRLLL  553 (567)
Q Consensus       499 ~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll  553 (567)
                      +.+++++|++++...             ...+..|.||+++|+..++.+++++|+
T Consensus        85 ~~~~~~~L~~~~~~~-------------~~~~~~~~~~l~~~~~~~~~~~~~~Ll  126 (126)
T cd00204          85 NLDVVKLLLKHGADV-------------NARDKDGRTPLHLAAKNGHLEVVKLLL  126 (126)
T ss_pred             cHHHHHHHHHcCCCC-------------cccCCCCCCHHHHHHhcCCHHHHHHhC
Confidence            999999998876332             445677889999999999999998885

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>KOG0195|consensus

Probab=99.71  E-value=1e-17  Score=138.70  Aligned_cols=123  Identities=28%  Similarity=0.333  Sum_probs=106.9

Q ss_pred             HHhCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCc
Q psy12891        371 LRAHPSLVTATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDE  450 (567)
Q Consensus       371 l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~  450 (567)
                      +.....+.+.-|..|.+|||+|++.|+..+++.|+..|+.....+   ....||||+|+..|+-++|+.|++..+|+|..
T Consensus        20 ld~tehdln~gddhgfsplhwaakegh~aivemll~rgarvn~tn---mgddtplhlaaahghrdivqkll~~kadvnav   96 (448)
T KOG0195|consen   20 LDDTEHDLNVGDDHGFSPLHWAAKEGHVAIVEMLLSRGARVNSTN---MGDDTPLHLAAAHGHRDIVQKLLSRKADVNAV   96 (448)
T ss_pred             ecCcccccccccccCcchhhhhhhcccHHHHHHHHhccccccccc---CCCCcchhhhhhcccHHHHHHHHHHhcccchh
Confidence            333444567778888899999999999999999998776643333   34569999999999999999999999999999


Q ss_pred             cCcCCcHHHHHHHcCcHHHHHHHHhcccccccccccCCcHHHHHHH
Q psy12891        451 NKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLGVTALHVAAY  496 (567)
Q Consensus       451 ~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~  496 (567)
                      +..|.|||||||..|+..+.+-|++.|+.++.++++|.|||..|.-
T Consensus        97 nehgntplhyacfwgydqiaedli~~ga~v~icnk~g~tpldkakp  142 (448)
T KOG0195|consen   97 NEHGNTPLHYACFWGYDQIAEDLISCGAAVNICNKKGMTPLDKAKP  142 (448)
T ss_pred             hccCCCchhhhhhhcHHHHHHHHHhccceeeecccCCCCchhhhch
Confidence            9999999999999999999999999999999999999999998753

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.70  E-value=5.6e-16  Score=123.19  Aligned_cols=123  Identities=35%  Similarity=0.468  Sum_probs=100.4

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCccCcCCcHHHHH
Q psy12891        382 TKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLA  461 (567)
Q Consensus       382 ~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A  461 (567)
                      +..|.|||+.|+..++.+++++|++.+...   ...+..|.+||+.|+..++.+++++|++.|++++..+..|.||+|+|
T Consensus         4 ~~~g~t~l~~a~~~~~~~~i~~li~~~~~~---~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a   80 (126)
T cd00204           4 DEDGRTPLHLAASNGHLEVVKLLLENGADV---NAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADVNARDKDGNTPLHLA   80 (126)
T ss_pred             CcCCCCHHHHHHHcCcHHHHHHHHHcCCCC---CccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHH
Confidence            456777888888888778888887766543   34445777888888888888888888888888888888888999999


Q ss_pred             HHcCcHHHHHHHHhcccccccccccCCcHHHHHHHcCCHHHHHHHH
Q psy12891        462 AQNGHNQVLEEMRSSKALNVYSKKLGVTALHVAAYFGQADTVRELL  507 (567)
Q Consensus       462 ~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll  507 (567)
                      +..++.+++++|++.+.+.+..+..|.||+++|...++.+++++|+
T Consensus        81 ~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~Ll  126 (126)
T cd00204          81 ARNGNLDVVKLLLKHGADVNARDKDGRTPLHLAAKNGHLEVVKLLL  126 (126)
T ss_pred             HHcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHhcCCHHHHHHhC
Confidence            9888888999998888878888888889999988888888888874

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>KOG4214|consensus

Probab=99.67  E-value=1.6e-16  Score=107.09  Aligned_cols=103  Identities=27%  Similarity=0.348  Sum_probs=84.8

Q ss_pred             hhhHHhhcCChhHHHHHHhhcCCCCChhhhHhhhcCchHHHHHHHhcCCCCCCCCCCCChHHHHHHHhCCHHHHHHHHHc
Q psy12891         13 PLHIAARVKDGDRCALMLLKSGAGPNLTNIAARVKDGDRCALMLLKSGAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLED   92 (567)
Q Consensus        13 ~L~~A~~~g~~~~v~~~L~~~g~~~~~~~~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~   92 (567)
                      -..|++++|..+.|.+                           ....|.++|..- .|++|||+|+-.|+.+++++|+..
T Consensus         5 ~~~W~vkNG~~DeVk~---------------------------~v~~g~nVn~~~-ggR~plhyAAD~GQl~ilefli~i   56 (117)
T KOG4214|consen    5 SVAWNVKNGEIDEVKQ---------------------------SVNEGLNVNEIY-GGRTPLHYAADYGQLSILEFLISI   56 (117)
T ss_pred             hHhhhhccCcHHHHHH---------------------------HHHccccHHHHh-CCcccchHhhhcchHHHHHHHHHh
Confidence            3466777777776665                           556677777555 899999999999999999999999


Q ss_pred             CCCCCCCCCCCCChhHHHHhcCchhHHHHHHHhhhhhhhhHHhhhhcccccccccHHHHH
Q psy12891         93 GGDPMYKNKIGETPLHLASRNCKAEVVDLLIQFVQNISQEKVLEYVNSVNEDGASALHYA  152 (567)
Q Consensus        93 ga~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~t~L~~a  152 (567)
                      ||+++.+|++|.|||-.|+..||.++|++|++.|++-         .....+|.+.+..+
T Consensus        57 GA~i~~kDKygITPLLsAvwEGH~~cVklLL~~GAdr---------t~~~PdG~~~~eat  107 (117)
T KOG4214|consen   57 GANIQDKDKYGITPLLSAVWEGHRDCVKLLLQNGADR---------TIHAPDGTALIEAT  107 (117)
T ss_pred             ccccCCccccCCcHHHHHHHHhhHHHHHHHHHcCccc---------ceeCCCchhHHhhc
Confidence            9999999999999999999999999999999999983         33445565555443

>KOG4214|consensus

Probab=99.64  E-value=2e-15  Score=101.80  Aligned_cols=89  Identities=27%  Similarity=0.314  Sum_probs=65.1

Q ss_pred             HHHHHHHcCcHHHHHHHHHcCCCCCCccCcCCcHHHHHHHcCcHHHHHHHHhcccccccccccCCcHHHHHHHcCCHHHH
Q psy12891        424 PLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLGVTALHVAAYFGQADTV  503 (567)
Q Consensus       424 ~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~  503 (567)
                      -+.|++++|.++-|+..+..|.++|..- .|++|||+|+-.|+.+++++|+..|++++.+|+.|.|||--|+..||.++|
T Consensus         5 ~~~W~vkNG~~DeVk~~v~~g~nVn~~~-ggR~plhyAAD~GQl~ilefli~iGA~i~~kDKygITPLLsAvwEGH~~cV   83 (117)
T KOG4214|consen    5 SVAWNVKNGEIDEVKQSVNEGLNVNEIY-GGRTPLHYAADYGQLSILEFLISIGANIQDKDKYGITPLLSAVWEGHRDCV   83 (117)
T ss_pred             hHhhhhccCcHHHHHHHHHccccHHHHh-CCcccchHhhhcchHHHHHHHHHhccccCCccccCCcHHHHHHHHhhHHHH
Confidence            4566777777777777777776666533 677777777777777777777777777777777777777777777777777


Q ss_pred             HHHHhcCCCC
Q psy12891        504 RELLSHVPGT  513 (567)
Q Consensus       504 ~~Ll~~~~~~  513 (567)
                      ++|++.+++-
T Consensus        84 klLL~~GAdr   93 (117)
T KOG4214|consen   84 KLLLQNGADR   93 (117)
T ss_pred             HHHHHcCccc
Confidence            7777776654

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.60  E-value=1.2e-15  Score=98.98  Aligned_cols=55  Identities=49%  Similarity=0.770  Sum_probs=33.7

Q ss_pred             HHhcC-CCCCCCCCCCChHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCChhHHH
Q psy12891         56 LLKSG-AGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLA  110 (567)
Q Consensus        56 Ll~~g-~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A  110 (567)
                      |+++| +++|.+|..|+||||+||..|+.+++++|++.|++++.+|..|+||||+|
T Consensus         1 LL~~~~~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g~d~~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    1 LLEHGPADVNAQDKYGNTPLHWAARYGHSEVVRLLLQNGADPNAKDKDGQTPLHYA   56 (56)
T ss_dssp             -----T--TT---TTS--HHHHHHHHT-HHHHHHHHHCT--TT---TTS--HHHH-
T ss_pred             CCccCcCCCcCcCCCCCcHHHHHHHcCcHHHHHHHHHCcCCCCCCcCCCCCHHHhC
Confidence            56778 99999999999999999999999999999999999999999999999997

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.56  E-value=8.8e-15  Score=94.70  Aligned_cols=54  Identities=44%  Similarity=0.733  Sum_probs=46.7

Q ss_pred             CChHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCChhHHHHhcCchhHHHHHH
Q psy12891         70 GQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVVDLLI  123 (567)
Q Consensus        70 g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll  123 (567)
                      |+||||+||..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~~~din~~d~~g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEHGADINAQDEDGRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHTTSGTT-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence            689999999999999999999999999999999999999999999999999986

...

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.54  E-value=3.8e-13  Score=119.98  Aligned_cols=123  Identities=34%  Similarity=0.439  Sum_probs=99.7

Q ss_pred             CCCCHHHHHHHcCcHHHHHHHHHcCCCCCCccCcCCcHHHHHHHcCc-----HHHHHHHHhccc---ccccccccCCcHH
Q psy12891        420 TEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGH-----NQVLEEMRSSKA---LNVYSKKLGVTAL  491 (567)
Q Consensus       420 ~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~-----~~~v~~Ll~~~~---~~~~~~~~g~t~l  491 (567)
                      .+.++++.++..+..+++++|+..|++++..+..|.||||+|+..++     .++++.|++.|+   .....|..|.|||
T Consensus        72 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~g~tpl  151 (235)
T COG0666          72 DGRLPLHSAASKGDDKIVKLLLASGADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDEDGNTPL  151 (235)
T ss_pred             cccCHHHHHHHcCcHHHHHHHHHcCCCcccccCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCCccccCCCCCchh
Confidence            46688888888888888888888888888888888888888888888     888888888888   5555688888888


Q ss_pred             HHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcccccccCCCCCCCHHHHHHHcCCHHHHHHHHhc
Q psy12891        492 HVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVRLLLNS  555 (567)
Q Consensus       492 ~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~  555 (567)
                      |+|+..|+.++++.|++.++..             ..++..|.|++++|+..++.++++.|++.
T Consensus       152 ~~A~~~~~~~~~~~ll~~~~~~-------------~~~~~~g~t~l~~a~~~~~~~~~~~l~~~  202 (235)
T COG0666         152 HWAALNGDADIVELLLEAGADP-------------NSRNSYGVTALDPAAKNGRIELVKLLLDK  202 (235)
T ss_pred             HHHHHcCchHHHHHHHhcCCCC-------------cccccCCCcchhhhcccchHHHHHHHHhc
Confidence            8888888888888888886654             34467888888888888888888888874

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.50  E-value=5.6e-14  Score=90.90  Aligned_cols=54  Identities=31%  Similarity=0.556  Sum_probs=28.8

Q ss_pred             CCCHHHHHHHcCcHHHHHHHHHcCCCCCCccCcCCcHHHHHHHcCcHHHHHHHH
Q psy12891        421 EATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMR  474 (567)
Q Consensus       421 ~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll  474 (567)
                      |.||||+|++.|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~~~din~~d~~g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEHGADINAQDEDGRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHTTSGTT-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence            345666666666666666666666666666666666666666666666666554

...

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.50  E-value=2.1e-14  Score=93.17  Aligned_cols=55  Identities=35%  Similarity=0.426  Sum_probs=31.0

Q ss_pred             HHHcC-CCCCCccCcCCcHHHHHHHcCcHHHHHHHHhcccccccccccCCcHHHHH
Q psy12891        440 LVKAG-ASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLGVTALHVA  494 (567)
Q Consensus       440 Ll~~g-~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A  494 (567)
                      |+++| ++++..|..|.||||+|+..|+.+++++|++.|++++.+|..|+||||+|
T Consensus         1 LL~~~~~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g~d~~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    1 LLEHGPADVNAQDKYGNTPLHWAARYGHSEVVRLLLQNGADPNAKDKDGQTPLHYA   56 (56)
T ss_dssp             -----T--TT---TTS--HHHHHHHHT-HHHHHHHHHCT--TT---TTS--HHHH-
T ss_pred             CCccCcCCCcCcCCCCCcHHHHHHHcCcHHHHHHHHHCcCCCCCCcCCCCCHHHhC
Confidence            57777 88888999999999999999999999999999999999999999999887

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.47  E-value=2.6e-12  Score=114.55  Aligned_cols=130  Identities=31%  Similarity=0.363  Sum_probs=114.2

Q ss_pred             ccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCCCCHHHHHHHcCc-----HHHHHHHHHcCC---CCCC
Q psy12891        378 VTATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGH-----ANVVRVLVKAGA---SCTD  449 (567)
Q Consensus       378 ~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~~~-----~~~v~~Ll~~g~---~~~~  449 (567)
                      ....+..+.++++.++..+..+++++++..+.+.   ...+..|.||||+|+..++     .+++++|++.|+   ..+.
T Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~~~~  142 (235)
T COG0666          66 LAARDLDGRLPLHSAASKGDDKIVKLLLASGADV---NAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNL  142 (235)
T ss_pred             cccCCccccCHHHHHHHcCcHHHHHHHHHcCCCc---ccccCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCCccc
Confidence            3445566888999999999999998888877663   5556688899999999999     999999999999   5666


Q ss_pred             ccCcCCcHHHHHHHcCcHHHHHHHHhcccccccccccCCcHHHHHHHcCCHHHHHHHHhcC
Q psy12891        450 ENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLGVTALHVAAYFGQADTVRELLSHV  510 (567)
Q Consensus       450 ~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~  510 (567)
                      .+..|.||||+|+..|+.+++++|++.|+++..++..|.|+++.|+..++.++++.+++.+
T Consensus       143 ~~~~g~tpl~~A~~~~~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~l~~~~  203 (235)
T COG0666         143 RDEDGNTPLHWAALNGDADIVELLLEAGADPNSRNSYGVTALDPAAKNGRIELVKLLLDKG  203 (235)
T ss_pred             cCCCCCchhHHHHHcCchHHHHHHHhcCCCCcccccCCCcchhhhcccchHHHHHHHHhcC
Confidence            7999999999999999999999999999999999999999999999999999999999874

>KOG0515|consensus

Probab=99.46  E-value=1.8e-13  Score=123.29  Aligned_cols=120  Identities=18%  Similarity=0.203  Sum_probs=102.2

Q ss_pred             hhHhhhcCchHHHHHHHhcCCCCCCCCCCCChHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCChhHHHHhcCchhHHH
Q psy12891         41 NIAARVKDGDRCALMLLKSGAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVVD  120 (567)
Q Consensus        41 ~~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~~~~~iv~  120 (567)
                      .+.|+..+..++|+-.+..--|+...+..|-|+||-|+..||.+||++|++.|+++|..|.+||||||+|+.+++.-+++
T Consensus       554 LLDaaLeGEldlVq~~i~ev~DpSqpNdEGITaLHNAiCaghyeIVkFLi~~ganVNa~DSdGWTPLHCAASCNnv~~ck  633 (752)
T KOG0515|consen  554 LLDAALEGELDLVQRIIYEVTDPSQPNDEGITALHNAICAGHYEIVKFLIEFGANVNAADSDGWTPLHCAASCNNVPMCK  633 (752)
T ss_pred             HHhhhhcchHHHHHHHHHhhcCCCCCCccchhHHhhhhhcchhHHHHHHHhcCCcccCccCCCCchhhhhhhcCchHHHH
Confidence            36788899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhhhhhhhHHhhhhcccccccccHHHHHHHhCCcccccccccccHHHHHHHHH
Q psy12891        121 LLIQFVQNISQEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLE  177 (567)
Q Consensus       121 ~Ll~~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~~~v~~Ll~  177 (567)
                      .|++.|+.+        +-.+-.++.|+..-+-..         +.+-..|.++|..
T Consensus       634 qLVe~Gaav--------fAsTlSDmeTa~eKCee~---------eeGY~~CsqyL~~  673 (752)
T KOG0515|consen  634 QLVESGAAV--------FASTLSDMETAAEKCEEM---------EEGYDQCSQYLYG  673 (752)
T ss_pred             HHHhccceE--------Eeeecccccchhhhcchh---------hhhHHHHHHHHHH
Confidence            999999875        444455666766554321         2455566777754

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.44  E-value=2.9e-13  Score=136.39  Aligned_cols=102  Identities=34%  Similarity=0.435  Sum_probs=88.3

Q ss_pred             HhhhcCchHHHHHHHhcCCCCCCCCCCCChHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCChhHHHHhcCchhHHHHH
Q psy12891         43 AARVKDGDRCALMLLKSGAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVVDLL  122 (567)
Q Consensus        43 ~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~~~~~iv~~L  122 (567)
                      .++..++.+++++|++.|+++|.+|.+|+||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|
T Consensus        88 ~aa~~G~~~~vk~LL~~Gadin~~d~~G~TpLh~Aa~~g~~eiv~~LL~~Gadvn~~d~~G~TpLh~A~~~g~~~iv~~L  167 (664)
T PTZ00322         88 QLAASGDAVGARILLTGGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDKDGKTPLELAEENGFREVVQLL  167 (664)
T ss_pred             HHHHcCCHHHHHHHHHCCCCCCCcCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCcHHHHHHH
Confidence            45556667778889999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHh-------hhhhhhhHHhhhhcccccccccHHHHHH
Q psy12891        123 IQF-------VQNISQEKVLEYVNSVNEDGASALHYAC  153 (567)
Q Consensus       123 l~~-------~~~~~~~~~~~~~~~~~~~~~t~L~~a~  153 (567)
                      +++       +++         .+..+..|.+|+..+.
T Consensus       168 l~~~~~~~~~ga~---------~~~~~~~g~~~~~~~~  196 (664)
T PTZ00322        168 SRHSQCHFELGAN---------AKPDSFTGKPPSLEDS  196 (664)
T ss_pred             HhCCCcccccCCC---------CCccccCCCCccchhh
Confidence            998       544         4555666666655544

>KOG0515|consensus

Probab=99.41  E-value=7.4e-13  Score=119.47  Aligned_cols=116  Identities=21%  Similarity=0.184  Sum_probs=68.9

Q ss_pred             HHHHHcCcHHHHHHHHHcCCCCCCccCcCCcHHHHHHHcCcHHHHHHHHhcccccccccccCCcHHHHHHHcCCHHHHHH
Q psy12891        426 QLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLGVTALHVAAYFGQADTVRE  505 (567)
Q Consensus       426 ~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~  505 (567)
                      .-|+..|..++|+..+..--|+...|.+|.|+||-|+..|+.+||++|++.|++++..|.+||||||.|+.++++-|++.
T Consensus       555 LDaaLeGEldlVq~~i~ev~DpSqpNdEGITaLHNAiCaghyeIVkFLi~~ganVNa~DSdGWTPLHCAASCNnv~~ckq  634 (752)
T KOG0515|consen  555 LDAALEGELDLVQRIIYEVTDPSQPNDEGITALHNAICAGHYEIVKFLIEFGANVNAADSDGWTPLHCAASCNNVPMCKQ  634 (752)
T ss_pred             HhhhhcchHHHHHHHHHhhcCCCCCCccchhHHhhhhhcchhHHHHHHHhcCCcccCccCCCCchhhhhhhcCchHHHHH
Confidence            33555666666666665555555666666666666666666666666666666666666666666666666666666666


Q ss_pred             HHhcCCCCCCCCCCCCcccccccCCCCCCCHHHHH--HHcCCHHHHHHHH
Q psy12891        506 LLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLA--AYSGNENVVRLLL  553 (567)
Q Consensus       506 Ll~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A--~~~~~~~~v~~Ll  553 (567)
                      |+++|+-.+..+            -.++.||.+-+  .+.|-..|.+||.
T Consensus       635 LVe~GaavfAsT------------lSDmeTa~eKCee~eeGY~~CsqyL~  672 (752)
T KOG0515|consen  635 LVESGAAVFAST------------LSDMETAAEKCEEMEEGYDQCSQYLY  672 (752)
T ss_pred             HHhccceEEeee------------cccccchhhhcchhhhhHHHHHHHHH
Confidence            666665544322            23445555444  3345556666654

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.41  E-value=1e-12  Score=132.47  Aligned_cols=86  Identities=31%  Similarity=0.319  Sum_probs=56.6

Q ss_pred             HHHHHHHcCcHHHHHHHHHcCCCCCCccCcCCcHHHHHHHcCcHHHHHHHHhcccccccccccCCcHHHHHHHcCCHHHH
Q psy12891        424 PLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLGVTALHVAAYFGQADTV  503 (567)
Q Consensus       424 ~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~  503 (567)
                      .|+.|+..|+.+.+++|+++|+++|..|..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..++.+++
T Consensus        85 ~L~~aa~~G~~~~vk~LL~~Gadin~~d~~G~TpLh~Aa~~g~~eiv~~LL~~Gadvn~~d~~G~TpLh~A~~~g~~~iv  164 (664)
T PTZ00322         85 ELCQLAASGDAVGARILLTGGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDKDGKTPLELAEENGFREVV  164 (664)
T ss_pred             HHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCcHHHH
Confidence            45666666666666666666666666666666666666666666666666666666666666666666666666666666


Q ss_pred             HHHHhc
Q psy12891        504 RELLSH  509 (567)
Q Consensus       504 ~~Ll~~  509 (567)
                      ++|+++
T Consensus       165 ~~Ll~~  170 (664)
T PTZ00322        165 QLLSRH  170 (664)
T ss_pred             HHHHhC
Confidence            666665

>KOG1710|consensus

Probab=99.40  E-value=3e-12  Score=106.54  Aligned_cols=119  Identities=29%  Similarity=0.379  Sum_probs=73.7

Q ss_pred             CCHHHHHHHcCCHHHHHHHHHhCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCCCCHHHHHHHc
Q psy12891        352 QKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEG  431 (567)
Q Consensus       352 ~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~  431 (567)
                      .+||.-++..+..+-...|++.-.. ++.+|..|+++|..|+.+|+.++++.+++.+++  .+......+.||||+|+.+
T Consensus        13 ~~~Lle~i~Kndt~~a~~LLs~vr~-vn~~D~sGMs~LahAaykGnl~~v~lll~~gaD--vN~~qhg~~YTpLmFAALS   89 (396)
T KOG1710|consen   13 KSPLLEAIDKNDTEAALALLSTVRQ-VNQRDPSGMSVLAHAAYKGNLTLVELLLELGAD--VNDKQHGTLYTPLMFAALS   89 (396)
T ss_pred             hhHHHHHHccCcHHHHHHHHHHhhh-hhccCCCcccHHHHHHhcCcHHHHHHHHHhCCC--cCcccccccccHHHHHHHc
Confidence            3566666666666666666654222 556666666666666666666666666666655  3333444556666666666


Q ss_pred             CcHHHHHHHHHcCCCCCCccCcCCcHHHHHHHcCcHHHHHHH
Q psy12891        432 GHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEM  473 (567)
Q Consensus       432 ~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~L  473 (567)
                      |+.++.++|++.|+.+...|+-|+|+-.+|+--|+.++|..+
T Consensus        90 Gn~dvcrllldaGa~~~~vNsvgrTAaqmAAFVG~H~CV~iI  131 (396)
T KOG1710|consen   90 GNQDVCRLLLDAGARMYLVNSVGRTAAQMAAFVGHHECVAII  131 (396)
T ss_pred             CCchHHHHHHhccCccccccchhhhHHHHHHHhcchHHHHHH
Confidence            666666666666666666666666666666666666666554

>KOG1710|consensus

Probab=99.38  E-value=4.4e-12  Score=105.62  Aligned_cols=121  Identities=22%  Similarity=0.252  Sum_probs=81.4

Q ss_pred             CcHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCC-ccCcCCcHHHHHHHc
Q psy12891        386 NTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTD-ENKTGFTAVHLAAQN  464 (567)
Q Consensus       386 ~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~-~~~~g~t~l~~A~~~  464 (567)
                      ..||..++.++..+....|++-..   ..+..+..|.++|..|+..|+.+++++|++.|+|+|. .+..+.||||+|+.+
T Consensus        13 ~~~Lle~i~Kndt~~a~~LLs~vr---~vn~~D~sGMs~LahAaykGnl~~v~lll~~gaDvN~~qhg~~YTpLmFAALS   89 (396)
T KOG1710|consen   13 KSPLLEAIDKNDTEAALALLSTVR---QVNQRDPSGMSVLAHAAYKGNLTLVELLLELGADVNDKQHGTLYTPLMFAALS   89 (396)
T ss_pred             hhHHHHHHccCcHHHHHHHHHHhh---hhhccCCCcccHHHHHHhcCcHHHHHHHHHhCCCcCcccccccccHHHHHHHc
Confidence            456666777777776666665321   2334445677777777777777777777777777774 455666777777777


Q ss_pred             CcHHHHHHHHhcccccccccccCCcHHHHHHHcCCHHHHHHHHhc
Q psy12891        465 GHNQVLEEMRSSKALNVYSKKLGVTALHVAAYFGQADTVRELLSH  509 (567)
Q Consensus       465 ~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~  509 (567)
                      |+.++.++|++.|+.....+.-|+|+-++|+.-|+.++|..+-.+
T Consensus        90 Gn~dvcrllldaGa~~~~vNsvgrTAaqmAAFVG~H~CV~iINN~  134 (396)
T KOG1710|consen   90 GNQDVCRLLLDAGARMYLVNSVGRTAAQMAAFVGHHECVAIINNH  134 (396)
T ss_pred             CCchHHHHHHhccCccccccchhhhHHHHHHHhcchHHHHHHhcc
Confidence            777777777777777777777777777777777777666665544

>PF13606 Ank_3: Ankyrin repeat

Probab=99.07  E-value=1.7e-10  Score=62.91  Aligned_cols=30  Identities=53%  Similarity=0.836  Sum_probs=28.2

Q ss_pred             CCCCHHHHHHHcCCHHHHHHHHhccCCcccc
Q psy12891        532 SGMTPLHLAAYSGNENVVRLLLNSAGVQVDA  562 (567)
Q Consensus       532 ~g~t~l~~A~~~~~~~~v~~Ll~~~g~~~~~  562 (567)
                      +|.||||+|+++|+.++|++||++ |+|||+
T Consensus         1 ~G~T~Lh~A~~~g~~e~v~~Ll~~-gadvn~   30 (30)
T PF13606_consen    1 NGNTPLHLAASNGNIEIVKYLLEH-GADVNA   30 (30)
T ss_pred             CCCCHHHHHHHhCCHHHHHHHHHc-CCCCCC
Confidence            489999999999999999999997 999985

>PF13606 Ank_3: Ankyrin repeat

Probab=99.07  E-value=2.2e-10  Score=62.47  Aligned_cols=30  Identities=43%  Similarity=0.681  Sum_probs=27.7

Q ss_pred             CCChHHHHHHHhCCHHHHHHHHHcCCCCCC
Q psy12891         69 DGQTPVHAAAKYGNLVTLQLLLEDGGDPMY   98 (567)
Q Consensus        69 ~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~   98 (567)
                      +|+||||+||+.|+.++|++|+++|+|+|.
T Consensus         1 ~G~T~Lh~A~~~g~~e~v~~Ll~~gadvn~   30 (30)
T PF13606_consen    1 NGNTPLHLAASNGNIEIVKYLLEHGADVNA   30 (30)
T ss_pred             CCCCHHHHHHHhCCHHHHHHHHHcCCCCCC
Confidence            589999999999999999999999999873

>KOG0818|consensus

Probab=99.03  E-value=9.3e-10  Score=98.98  Aligned_cols=74  Identities=32%  Similarity=0.513  Sum_probs=67.2

Q ss_pred             HHhcCCCCCCCCC-CCChHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCChhHHHHhcCchhHHHHHHHhhhhh
Q psy12891         56 LLKSGAGPNLTTD-DGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVVDLLIQFVQNI  129 (567)
Q Consensus        56 Ll~~g~~~~~~~~-~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~~~~~  129 (567)
                      |+..|+++|..+. .|.||||+|++.|+...+++|+-.|||+...|..|.||+.+|-..||.++.+.|++..-..
T Consensus       152 ll~lGA~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vYGAD~~a~d~~GmtP~~~AR~~gH~~laeRl~e~~y~v  226 (669)
T KOG0818|consen  152 LLSLGAQANFFHPEKGNTPLHVAAKAGQILQAELLAVYGADPGAQDSSGMTPVDYARQGGHHELAERLVEIQYEL  226 (669)
T ss_pred             HHHcccccCCCCcccCCchhHHHHhccchhhhhHHhhccCCCCCCCCCCCcHHHHHHhcCchHHHHHHHHHHHHH
Confidence            6778888887765 6999999999999999999999999999999999999999999999999999999865443

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.97  E-value=1.1e-09  Score=61.98  Aligned_cols=33  Identities=39%  Similarity=0.623  Sum_probs=30.7

Q ss_pred             CCChHHHHHHHhCCHHHHHHHHHcCCCCCCCCC
Q psy12891         69 DGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNK  101 (567)
Q Consensus        69 ~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~  101 (567)
                      +|+||||+|+..|+.+++++|+++|++++.+|.
T Consensus         1 dG~TpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~   33 (33)
T PF00023_consen    1 DGNTPLHYAAQRGHPDIVKLLLKHGADINARDN   33 (33)
T ss_dssp             TSBBHHHHHHHTTCHHHHHHHHHTTSCTTCBCT
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHCcCCCCCCCC
Confidence            589999999999999999999999999998763

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.96  E-value=8.6e-10  Score=62.46  Aligned_cols=33  Identities=42%  Similarity=0.775  Sum_probs=30.8

Q ss_pred             CCCCHHHHHHHcCCHHHHHHHHhccCCccccccc
Q psy12891        532 SGMTPLHLAAYSGNENVVRLLLNSAGVQVDAQTQ  565 (567)
Q Consensus       532 ~g~t~l~~A~~~~~~~~v~~Ll~~~g~~~~~~~~  565 (567)
                      +|.||||+|++.|+.+++++||++ |+||+++|+
T Consensus         1 dG~TpLh~A~~~~~~~~v~~Ll~~-ga~~~~~d~   33 (33)
T PF00023_consen    1 DGNTPLHYAAQRGHPDIVKLLLKH-GADINARDN   33 (33)
T ss_dssp             TSBBHHHHHHHTTCHHHHHHHHHT-TSCTTCBCT
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHC-cCCCCCCCC
Confidence            488999999999999999999995 999999985

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG0506|consensus

Probab=98.91  E-value=1.7e-09  Score=96.90  Aligned_cols=91  Identities=27%  Similarity=0.264  Sum_probs=79.1

Q ss_pred             CCChhhHHhhcCChhHHHHHHhhcCCCCChhhhHhhhcCchHHHHHHHhcCCCCCCCCCCCChHHHHHHHhCCHHHHHHH
Q psy12891         10 RETPLHIAARVKDGDRCALMLLKSGAGPNLTNIAARVKDGDRCALMLLKSGAGPNLTTDDGQTPVHAAAKYGNLVTLQLL   89 (567)
Q Consensus        10 ~~t~L~~A~~~g~~~~v~~~L~~~g~~~~~~~~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~L   89 (567)
                      +.-++++||..|+...+.+                           +.-.|.|++.+|.+.+|+||.||..|+++++|+|
T Consensus       506 ~~i~~~~aa~~GD~~alrR---------------------------f~l~g~D~~~~DyD~RTaLHvAAaEG~v~v~kfl  558 (622)
T KOG0506|consen  506 TVINVMYAAKNGDLSALRR---------------------------FALQGMDLETKDYDDRTALHVAAAEGHVEVVKFL  558 (622)
T ss_pred             chhhhhhhhhcCCHHHHHH---------------------------HHHhcccccccccccchhheeecccCceeHHHHH
Confidence            3446677777777665554                           5568999999999999999999999999999999


Q ss_pred             HHc-CCCCCCCCCCCCChhHHHHhcCchhHHHHHHHhhh
Q psy12891         90 LED-GGDPMYKNKIGETPLHLASRNCKAEVVDLLIQFVQ  127 (567)
Q Consensus        90 l~~-ga~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~~~  127 (567)
                      ++. +.+++.+|.+|+|||.-|...+|.+++++|-++..
T Consensus       559 ~~~~kv~~~~kDRw~rtPlDdA~~F~h~~v~k~L~~~~~  597 (622)
T KOG0506|consen  559 LNACKVDPDPKDRWGRTPLDDAKHFKHKEVVKLLEEAQY  597 (622)
T ss_pred             HHHHcCCCChhhccCCCcchHhHhcCcHHHHHHHHHHhc
Confidence            996 88999999999999999999999999999988644

>KOG0783|consensus

Probab=98.85  E-value=2.2e-09  Score=102.95  Aligned_cols=88  Identities=24%  Similarity=0.330  Sum_probs=81.0

Q ss_pred             CCCCCCCCChHHHHHHHhCCHHHHHHHHHcCCCCCCCCC-CCCChhHHHHhcCchhHHHHHHHhhhhhhhhHHhhhhccc
Q psy12891         63 PNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNK-IGETPLHLASRNCKAEVVDLLIQFVQNISQEKVLEYVNSV  141 (567)
Q Consensus        63 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~-~g~t~L~~A~~~~~~~iv~~Ll~~~~~~~~~~~~~~~~~~  141 (567)
                      .|.+|..|+|+||.|+..|...++++|+++|++++.+|. .|+||||-|+..|++|++-.|+++|..         +..+
T Consensus        45 anikD~~GR~alH~~~S~~k~~~l~wLlqhGidv~vqD~ESG~taLHRaiyyG~idca~lLL~~g~S---------L~i~  115 (1267)
T KOG0783|consen   45 ANIKDRYGRTALHIAVSENKNSFLRWLLQHGIDVFVQDEESGYTALHRAIYYGNIDCASLLLSKGRS---------LRIK  115 (1267)
T ss_pred             hhHHHhhccceeeeeeccchhHHHHHHHhcCceeeeccccccchHhhHhhhhchHHHHHHHHhcCCc---------eEEe
Confidence            678899999999999999999999999999999999886 799999999999999999999999988         7889


Q ss_pred             ccccccHHHHHHHhCCcc
Q psy12891        142 NEDGASALHYACQVTKAE  159 (567)
Q Consensus       142 ~~~~~t~L~~a~~~~~~~  159 (567)
                      |.+|.+||+..++.....
T Consensus       116 Dkeglsplq~~~r~~~~~  133 (1267)
T KOG0783|consen  116 DKEGLSPLQFLSRVLSST  133 (1267)
T ss_pred             cccCCCHHHHHhhccccc
Confidence            999999999999854433

>KOG0506|consensus

Probab=98.84  E-value=3.6e-09  Score=94.86  Aligned_cols=91  Identities=29%  Similarity=0.216  Sum_probs=69.7

Q ss_pred             CcCCcHHHHHHHcCcHHHHHHHHhcccccccccccCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcccccccCCC
Q psy12891        452 KTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSE  531 (567)
Q Consensus       452 ~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~  531 (567)
                      .++..++++|+..|.+..++.+.-.|.|...+|.+.+|+||.|+..|+++++++|++......            +.+|.
T Consensus       504 ~~~~i~~~~aa~~GD~~alrRf~l~g~D~~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~~------------~~kDR  571 (622)
T KOG0506|consen  504 NDTVINVMYAAKNGDLSALRRFALQGMDLETKDYDDRTALHVAAAEGHVEVVKFLLNACKVDP------------DPKDR  571 (622)
T ss_pred             ccchhhhhhhhhcCCHHHHHHHHHhcccccccccccchhheeecccCceeHHHHHHHHHcCCC------------Chhhc
Confidence            345567788888888888887777788888888888888888888888888888887644433            55678


Q ss_pred             CCCCHHHHHHHcCCHHHHHHHHh
Q psy12891        532 SGMTPLHLAAYSGNENVVRLLLN  554 (567)
Q Consensus       532 ~g~t~l~~A~~~~~~~~v~~Ll~  554 (567)
                      +|+|||+.|...+|.+++++|-+
T Consensus       572 w~rtPlDdA~~F~h~~v~k~L~~  594 (622)
T KOG0506|consen  572 WGRTPLDDAKHFKHKEVVKLLEE  594 (622)
T ss_pred             cCCCcchHhHhcCcHHHHHHHHH
Confidence            88888888888888888888765

>KOG0783|consensus

Probab=98.82  E-value=3.4e-09  Score=101.75  Aligned_cols=85  Identities=19%  Similarity=0.209  Sum_probs=76.0

Q ss_pred             ccCCCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCccC-cCCcHHHHHHHcCcHHHHHHHHhcccccccccccCCcHHH
Q psy12891        414 SARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENK-TGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLGVTALH  492 (567)
Q Consensus       414 ~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~-~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~  492 (567)
                      .+..+..|+|+||+|+..+..+++++|+++|++++.+|. .|+||||-|+..|+++++-.||.+|+.....|++|.+||+
T Consensus        45 anikD~~GR~alH~~~S~~k~~~l~wLlqhGidv~vqD~ESG~taLHRaiyyG~idca~lLL~~g~SL~i~Dkeglsplq  124 (1267)
T KOG0783|consen   45 ANIKDRYGRTALHIAVSENKNSFLRWLLQHGIDVFVQDEESGYTALHRAIYYGNIDCASLLLSKGRSLRIKDKEGLSPLQ  124 (1267)
T ss_pred             hhHHHhhccceeeeeeccchhHHHHHHHhcCceeeeccccccchHhhHhhhhchHHHHHHHHhcCCceEEecccCCCHHH
Confidence            455566899999999999999999999999999998876 5899999999999999999999999999999999999999


Q ss_pred             HHHHcC
Q psy12891        493 VAAYFG  498 (567)
Q Consensus       493 ~A~~~~  498 (567)
                      +-++-.
T Consensus       125 ~~~r~~  130 (1267)
T KOG0783|consen  125 FLSRVL  130 (1267)
T ss_pred             HHhhcc
Confidence            887643

>KOG0522|consensus

Probab=98.72  E-value=4.1e-08  Score=89.93  Aligned_cols=92  Identities=28%  Similarity=0.422  Sum_probs=78.6

Q ss_pred             ChhhHHhhcCChhHHHHHHhhcCCCCChhhhHhhhcCchHHHHHHHhcCCCCCCCCCCCChHHHHHHHhCCHHHHHHHHH
Q psy12891         12 TPLHIAARVKDGDRCALMLLKSGAGPNLTNIAARVKDGDRCALMLLKSGAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLE   91 (567)
Q Consensus        12 t~L~~A~~~g~~~~v~~~L~~~g~~~~~~~~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~   91 (567)
                      -|||+++...+.+...+.|                         +.+.+..++.+|..|.||||.|+..|+.+.++.|+.
T Consensus        22 ~~lh~~~~~~~~~sl~~el-------------------------~~~~~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~   76 (560)
T KOG0522|consen   22 KPLHWAVVTTDSDSLEQEL-------------------------LAKVSLVIDRRDPPGRTPLHLAVRLGHVEAARILLS   76 (560)
T ss_pred             cccchhhhccchhhHHHHH-------------------------hhhhhceeccccCCCCccHHHHHHhcCHHHHHHHHh
Confidence            4588888877777655533                         334566788899999999999999999999999999


Q ss_pred             cCCCCCCCCCCCCChhHHHHhcCchhHHHHHHHhhhh
Q psy12891         92 DGGDPMYKNKIGETPLHLASRNCKAEVVDLLIQFVQN  128 (567)
Q Consensus        92 ~ga~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~~~~  128 (567)
                      .||++..++..|++|||-|+..|+.+++..++.+...
T Consensus        77 a~Adv~~kN~~gWs~L~EAv~~g~~q~i~~vlr~~~~  113 (560)
T KOG0522|consen   77 AGADVSIKNNEGWSPLHEAVSTGNEQIITEVLRHLKY  113 (560)
T ss_pred             cCCCccccccccccHHHHHHHcCCHHHHHHHHHHhHH
Confidence            9999999999999999999999999999999886544

>KOG0818|consensus

Probab=98.69  E-value=7.6e-08  Score=87.02  Aligned_cols=89  Identities=22%  Similarity=0.323  Sum_probs=73.9

Q ss_pred             HHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCccCcCCcHHHHHHHcCcH
Q psy12891        388 CAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHN  467 (567)
Q Consensus       388 ~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~  467 (567)
                      -||..++.++.+..-.|+..|++..+....  .|.||||.|++.|+.--+++|+-+|||++..|.+|+||+.+|-..|+-
T Consensus       136 QLhasvRt~nlet~LRll~lGA~~N~~hpe--kg~TpLHvAAk~Gq~~Q~ElL~vYGAD~~a~d~~GmtP~~~AR~~gH~  213 (669)
T KOG0818|consen  136 QLHSSVRTGNLETCLRLLSLGAQANFFHPE--KGNTPLHVAAKAGQILQAELLAVYGADPGAQDSSGMTPVDYARQGGHH  213 (669)
T ss_pred             HHHHHhhcccHHHHHHHHHcccccCCCCcc--cCCchhHHHHhccchhhhhHHhhccCCCCCCCCCCCcHHHHHHhcCch
Confidence            478888888888888888888886544433  688999999999988888888889999998899999999999888888


Q ss_pred             HHHHHHHhccc
Q psy12891        468 QVLEEMRSSKA  478 (567)
Q Consensus       468 ~~v~~Ll~~~~  478 (567)
                      ++.+.|++.-.
T Consensus       214 ~laeRl~e~~y  224 (669)
T KOG0818|consen  214 ELAERLVEIQY  224 (669)
T ss_pred             HHHHHHHHHHH
Confidence            88888887643

>KOG0782|consensus

Probab=98.64  E-value=1.5e-07  Score=86.61  Aligned_cols=117  Identities=18%  Similarity=0.160  Sum_probs=92.4

Q ss_pred             HHHHHHcCcHHHHHHHHHcCCCCCCccCcCCcHHHHHHHcCcHHHHHHHHhcccc--cccccccCCcHHHHHHHcCCHHH
Q psy12891        425 LQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKAL--NVYSKKLGVTALHVAAYFGQADT  502 (567)
Q Consensus       425 L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~--~~~~~~~g~t~l~~A~~~~~~~~  502 (567)
                      +.-|+..+..--+.-+..+|.++-.++....|.||+|+..|+-++|+|+|++|..  .+..|..|.|+||.|+..++..+
T Consensus       870 il~av~~~D~~klqE~h~~gg~ll~~~~~~~sllh~a~~tg~~eivkyildh~p~elld~~de~get~lhkaa~~~~r~v  949 (1004)
T KOG0782|consen  870 ILRAVLSSDLMKLQETHLNGGSLLIQGPDHCSLLHYAAKTGNGEIVKYILDHGPSELLDMADETGETALHKAACQRNRAV  949 (1004)
T ss_pred             HHHHHHhccHHHHHHHHhcCCceEeeCcchhhHHHHHHhcCChHHHHHHHhcCCHHHHHHHhhhhhHHHHHHHHhcchHH
Confidence            3445555544444445567778888888888999999999999999999999862  34567889999999999999999


Q ss_pred             HHHHHhcCCCCCCCCCCCCcccccccCCCCCCCHHHHHHHcCCHHHHHHHHh
Q psy12891        503 VRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVRLLLN  554 (567)
Q Consensus       503 ~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~  554 (567)
                      .++|++.+++..             ..|..|.||-..|-+.|..+..-||-.
T Consensus       950 c~~lvdagasl~-------------ktd~kg~tp~eraqqa~d~dlaayle~  988 (1004)
T KOG0782|consen  950 CQLLVDAGASLR-------------KTDSKGKTPQERAQQAGDPDLAAYLES  988 (1004)
T ss_pred             HHHHHhcchhhe-------------ecccCCCChHHHHHhcCCchHHHHHhh
Confidence            999999887653             347889999999999999999988854

>KOG2384|consensus

Probab=98.62  E-value=1.4e-07  Score=74.24  Aligned_cols=69  Identities=19%  Similarity=0.115  Sum_probs=65.3

Q ss_pred             CCCCCCCCCCCChHHHHHHHhCCHHHHHHHHHcC-CCCCCCCCCCCChhHHHHhcCchhHHHHHHHhhhh
Q psy12891         60 GAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDG-GDPMYKNKIGETPLHLASRNCKAEVVDLLIQFVQN  128 (567)
Q Consensus        60 g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g-a~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~~~~  128 (567)
                      +.++|.+|..|||||+.|+..|+.+.+.||+.+| +.+-..|..+.+++.+|-+.|..++++.|.++..+
T Consensus         2 e~~in~rD~fgWTalmcaa~eg~~eavsyllgrg~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~~~e   71 (223)
T KOG2384|consen    2 EGNINARDAFGWTALMCAAMEGSNEAVSYLLGRGVAFVGVTDESSLDAAQLAEKGGAQAFVHSLFENDRE   71 (223)
T ss_pred             CCCccchhhhcchHHHHHhhhcchhHHHHHhccCcccccccccccchHHHHHHhcChHHHHHHHHHHhcc
Confidence            5689999999999999999999999999999999 88999999999999999999999999999997554

>KOG0782|consensus

Probab=98.58  E-value=2e-07  Score=85.84  Aligned_cols=90  Identities=26%  Similarity=0.257  Sum_probs=75.1

Q ss_pred             CCCCHHHHHHHcCcHHHHHHHHHcCCC--CCCccCcCCcHHHHHHHcCcHHHHHHHHhcccccccccccCCcHHHHHHHc
Q psy12891        420 TEATPLQLAAEGGHANVVRVLVKAGAS--CTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLGVTALHVAAYF  497 (567)
Q Consensus       420 ~~~t~L~~A~~~~~~~~v~~Ll~~g~~--~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~  497 (567)
                      +..+.||+|++.|+-++|+|++++|..  ++..+..|.|+||.|+..++..+.++|.+.|+..-..|..|.||-..|-..
T Consensus       898 ~~~sllh~a~~tg~~eivkyildh~p~elld~~de~get~lhkaa~~~~r~vc~~lvdagasl~ktd~kg~tp~eraqqa  977 (1004)
T KOG0782|consen  898 DHCSLLHYAAKTGNGEIVKYILDHGPSELLDMADETGETALHKAACQRNRAVCQLLVDAGASLRKTDSKGKTPQERAQQA  977 (1004)
T ss_pred             chhhHHHHHHhcCChHHHHHHHhcCCHHHHHHHhhhhhHHHHHHHHhcchHHHHHHHhcchhheecccCCCChHHHHHhc
Confidence            455788888888888888888888754  344677889999999999999999999999998888889999999999999


Q ss_pred             CCHHHHHHHHhc
Q psy12891        498 GQADTVRELLSH  509 (567)
Q Consensus       498 ~~~~~~~~Ll~~  509 (567)
                      |+.+++.||-++
T Consensus       978 ~d~dlaayle~r  989 (1004)
T KOG0782|consen  978 GDPDLAAYLESR  989 (1004)
T ss_pred             CCchHHHHHhhh
Confidence            999999998765

>KOG3609|consensus

Probab=98.56  E-value=2.9e-07  Score=89.83  Aligned_cols=128  Identities=23%  Similarity=0.214  Sum_probs=96.1

Q ss_pred             CHHHHHHHcCcHHHHHHHHHcC----CCCCCccCcCCcHHHHHHHcCcHHHHHHHHhcccccccccccCCcHHHHHHHcC
Q psy12891        423 TPLQLAAEGGHANVVRVLVKAG----ASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLGVTALHVAAYFG  498 (567)
Q Consensus       423 t~L~~A~~~~~~~~v~~Ll~~g----~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~  498 (567)
                      --...|++.|+...|+..++..    .++|..|.-|+++|++|+.+.+.+++++|++++...       ..+|-.|+..|
T Consensus        27 ~~fL~a~E~gd~~~V~k~l~~~~~~~lninc~d~lGr~al~iai~nenle~~eLLl~~~~~~-------gdALL~aI~~~   99 (822)
T KOG3609|consen   27 KGFLLAHENGDVPLVAKALEYKAVSKLNINCRDPLGRLALHIAIDNENLELQELLLDTSSEE-------GDALLLAIAVG   99 (822)
T ss_pred             HHHHHHHHcCChHHHHHHHHhccccccchhccChHhhhceecccccccHHHHHHHhcCcccc-------chHHHHHHHHH
Confidence            3456778888888888777642    456778888999999999999999999999987544       26889999999


Q ss_pred             CHHHHHHHHhcCCCCCCCCCCCCcccccccCCCCCCCHHHHHHHcCCHHHHHHHHhccCCccc
Q psy12891        499 QADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVRLLLNSAGVQVD  561 (567)
Q Consensus       499 ~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~g~~~~  561 (567)
                      ..++|+.++.+.........   ..-.....-..+.|||..|+..+|.+|++.||++ |+++-
T Consensus       100 ~v~~VE~ll~~~~~~~~~~~---~~d~~~~~ft~ditPliLAAh~NnyEil~~Ll~k-g~~i~  158 (822)
T KOG3609|consen  100 SVPLVELLLVHFVDAPYLER---SGDANSPHFTPDITPLMLAAHLNNFEILQCLLTR-GHCIP  158 (822)
T ss_pred             HHHHHHHHHhcccccchhcc---ccccCcccCCCCccHHHHHHHhcchHHHHHHHHc-CCCCC
Confidence            99999999987554322111   0011123345678999999999999999999997 88763

>KOG0705|consensus

Probab=98.52  E-value=2.9e-07  Score=85.07  Aligned_cols=90  Identities=22%  Similarity=0.153  Sum_probs=79.2

Q ss_pred             HHHHHHHcCcHHHHHHHHHcCCCCCC----ccCcCCcHHHHHHHcCcHHHHHHHHhcccccccccccCCcHHHHHHHcCC
Q psy12891        424 PLQLAAEGGHANVVRVLVKAGASCTD----ENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLGVTALHVAAYFGQ  499 (567)
Q Consensus       424 ~L~~A~~~~~~~~v~~Ll~~g~~~~~----~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~  499 (567)
                      -|.-|+....+..+-+||.+|.....    .+..|+|+||+|+..|++.+.++|+-+|+|+-.+|..|+|+|.||-..|.
T Consensus       627 qLl~A~~~~Dl~t~~lLLAhg~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiWyg~dv~~rda~g~t~l~yar~a~s  706 (749)
T KOG0705|consen  627 QLLRAVAAEDLQTAILLLAHGSREEVNETCGEGDGRTALHLAARKGNVVLAQLLIWYGVDVMARDAHGRTALFYARQAGS  706 (749)
T ss_pred             HHHHHHHHHHHHHHHHHHhccCchhhhccccCCCCcchhhhhhhhcchhHHHHHHHhCccceecccCCchhhhhHhhccc
Confidence            46678888888889999999865432    45678999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCCC
Q psy12891        500 ADTVRELLSHVPGT  513 (567)
Q Consensus       500 ~~~~~~Ll~~~~~~  513 (567)
                      -+++..|++++...
T Consensus       707 qec~d~llq~gcp~  720 (749)
T KOG0705|consen  707 QECIDVLLQYGCPD  720 (749)
T ss_pred             HHHHHHHHHcCCCc
Confidence            99999999986543

>KOG2384|consensus

Probab=98.49  E-value=4.4e-07  Score=71.45  Aligned_cols=70  Identities=20%  Similarity=0.207  Sum_probs=63.0

Q ss_pred             CCCCCCccCcCCcHHHHHHHcCcHHHHHHHHhcc-cccccccccCCcHHHHHHHcCCHHHHHHHHhcCCCC
Q psy12891        444 GASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSK-ALNVYSKKLGVTALHVAAYFGQADTVRELLSHVPGT  513 (567)
Q Consensus       444 g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~-~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~  513 (567)
                      +.++|.+|..|+||++.|++.|+.+.+.||+.+| +.+..+|..|.++..+|-+.|+.+.++.|.+...+.
T Consensus         2 e~~in~rD~fgWTalmcaa~eg~~eavsyllgrg~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~~~et   72 (223)
T KOG2384|consen    2 EGNINARDAFGWTALMCAAMEGSNEAVSYLLGRGVAFVGVTDESSLDAAQLAEKGGAQAFVHSLFENDRET   72 (223)
T ss_pred             CCCccchhhhcchHHHHHhhhcchhHHHHHhccCcccccccccccchHHHHHHhcChHHHHHHHHHHhccC
Confidence            5688999999999999999999999999999999 788899999999999999999999999999875443

>KOG0522|consensus

Probab=98.46  E-value=4.5e-07  Score=83.35  Aligned_cols=89  Identities=26%  Similarity=0.414  Sum_probs=55.9

Q ss_pred             cHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCccCcCCcHHHHHHHcCc
Q psy12891        387 TCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGH  466 (567)
Q Consensus       387 ~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~  466 (567)
                      .|+|+++.....+-+...+... ........+..|.||||.|+..|+.+.++.|+.+|+++..+|..|++|||.|+..|+
T Consensus        22 ~~lh~~~~~~~~~sl~~el~~~-~~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Adv~~kN~~gWs~L~EAv~~g~  100 (560)
T KOG0522|consen   22 KPLHWAVVTTDSDSLEQELLAK-VSLVIDRRDPPGRTPLHLAVRLGHVEAARILLSAGADVSIKNNEGWSPLHEAVSTGN  100 (560)
T ss_pred             cccchhhhccchhhHHHHHhhh-hhceeccccCCCCccHHHHHHhcCHHHHHHHHhcCCCccccccccccHHHHHHHcCC
Confidence            3466666665555554444333 223444555566777777777777777777777777777777777777777777777


Q ss_pred             HHHHHHHHhc
Q psy12891        467 NQVLEEMRSS  476 (567)
Q Consensus       467 ~~~v~~Ll~~  476 (567)
                      ..++..++.+
T Consensus       101 ~q~i~~vlr~  110 (560)
T KOG0522|consen  101 EQIITEVLRH  110 (560)
T ss_pred             HHHHHHHHHH
Confidence            6666655554

>KOG0705|consensus

Probab=98.46  E-value=6.4e-07  Score=82.87  Aligned_cols=93  Identities=17%  Similarity=0.187  Sum_probs=80.6

Q ss_pred             HHHHHHcCCHHHHHHHHhcCCCcccc-cCCCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCccCcCCcHHHHHHHcCcH
Q psy12891        389 AHIAAMQGSVGVIEELMKFDRSGVIS-ARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHN  467 (567)
Q Consensus       389 l~~a~~~~~~~~~~~ll~~~~~~~~~-~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~  467 (567)
                      |..|+....+..+-.|+.++...... ...+.+|.|+||+||+.|++.+.++|+=+|+|+-.+|..|+|+|.||-+.|..
T Consensus       628 Ll~A~~~~Dl~t~~lLLAhg~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiWyg~dv~~rda~g~t~l~yar~a~sq  707 (749)
T KOG0705|consen  628 LLRAVAAEDLQTAILLLAHGSREEVNETCGEGDGRTALHLAARKGNVVLAQLLIWYGVDVMARDAHGRTALFYARQAGSQ  707 (749)
T ss_pred             HHHHHHHHHHHHHHHHHhccCchhhhccccCCCCcchhhhhhhhcchhHHHHHHHhCccceecccCCchhhhhHhhcccH
Confidence            44567777888888889888765543 34556779999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcccccc
Q psy12891        468 QVLEEMRSSKALNV  481 (567)
Q Consensus       468 ~~v~~Ll~~~~~~~  481 (567)
                      +++..|+.+|....
T Consensus       708 ec~d~llq~gcp~e  721 (749)
T KOG0705|consen  708 ECIDVLLQYGCPDE  721 (749)
T ss_pred             HHHHHHHHcCCCcc
Confidence            99999999998554

>KOG0511|consensus

Probab=98.39  E-value=4.4e-07  Score=79.46  Aligned_cols=58  Identities=24%  Similarity=0.294  Sum_probs=43.1

Q ss_pred             ChHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCChhHHHHhcCchhHHHHHHHhhhh
Q psy12891         71 QTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVVDLLIQFVQN  128 (567)
Q Consensus        71 ~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~~~~  128 (567)
                      +--|.+||+.|+++.|++|++.|.++|..|+...+||.+|+.+||.++|++|+++|+-
T Consensus        37 f~elceacR~GD~d~v~~LVetgvnVN~vD~fD~spL~lAsLcGHe~vvklLLenGAi   94 (516)
T KOG0511|consen   37 FGELCEACRAGDVDRVRYLVETGVNVNAVDRFDSSPLYLASLCGHEDVVKLLLENGAI   94 (516)
T ss_pred             hHHHHHHhhcccHHHHHHHHHhCCCcchhhcccccHHHHHHHcCcHHHHHHHHHcCCc
Confidence            3457777777777777777777777777777777777777777777777777777764

>KOG3609|consensus

Probab=98.35  E-value=1.9e-06  Score=84.30  Aligned_cols=122  Identities=22%  Similarity=0.293  Sum_probs=100.6

Q ss_pred             CHHHHHHHcCcHHHHHHHHHcC----CCCCCcCcCCCCHHHHHHHcCCHHHHHHHHHhCCCCccccCCCCCcHHHHHHHc
Q psy12891        320 TPLHLAAEAGQLQVCKLLLDLG----ASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQ  395 (567)
Q Consensus       320 t~L~~a~~~~~~~~v~~Ll~~g----~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~  395 (567)
                      .-...|+.+|+.-.|+..++..    .++|..|.-|+++|+.|+.+.+.+++++|+++....        ..+|.+|+..
T Consensus        27 ~~fL~a~E~gd~~~V~k~l~~~~~~~lninc~d~lGr~al~iai~nenle~~eLLl~~~~~~--------gdALL~aI~~   98 (822)
T KOG3609|consen   27 KGFLLAHENGDVPLVAKALEYKAVSKLNINCRDPLGRLALHIAIDNENLELQELLLDTSSEE--------GDALLLAIAV   98 (822)
T ss_pred             HHHHHHHHcCChHHHHHHHHhccccccchhccChHhhhceecccccccHHHHHHHhcCcccc--------chHHHHHHHH
Confidence            4466799999999999888753    467889999999999999999999999999875432        4689999999


Q ss_pred             CCHHHHHHHHhcCCCc-------ccccCCCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCC
Q psy12891        396 GSVGVIEELMKFDRSG-------VISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTD  449 (567)
Q Consensus       396 ~~~~~~~~ll~~~~~~-------~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~  449 (567)
                      +.+++++.++.+....       .........+.|||.+||..++.||+++|++.|+.+-.
T Consensus        99 ~~v~~VE~ll~~~~~~~~~~~~~d~~~~~ft~ditPliLAAh~NnyEil~~Ll~kg~~i~~  159 (822)
T KOG3609|consen   99 GSVPLVELLLVHFVDAPYLERSGDANSPHFTPDITPLMLAAHLNNFEILQCLLTRGHCIPI  159 (822)
T ss_pred             HHHHHHHHHHhcccccchhccccccCcccCCCCccHHHHHHHhcchHHHHHHHHcCCCCCC
Confidence            9999999999875432       12223334677999999999999999999999998764

>KOG0511|consensus

Probab=98.34  E-value=2.1e-06  Score=75.29  Aligned_cols=75  Identities=23%  Similarity=0.245  Sum_probs=63.2

Q ss_pred             CCHHHHHHHcCcHHHHHHHHHcCCCCCCccCcCCcHHHHHHHcCcHHHHHHHHhcccccccccccCCcHHHHHHHc
Q psy12891        422 ATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLGVTALHVAAYF  497 (567)
Q Consensus       422 ~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~  497 (567)
                      ..-|..||+.|.++.|++|++.|.++|..|....+||.+|+..|+.++|++|+++||--..-...|... ||++.+
T Consensus        37 f~elceacR~GD~d~v~~LVetgvnVN~vD~fD~spL~lAsLcGHe~vvklLLenGAiC~rdtf~G~RC-~YgaLn  111 (516)
T KOG0511|consen   37 FGELCEACRAGDVDRVRYLVETGVNVNAVDRFDSSPLYLASLCGHEDVVKLLLENGAICSRDTFDGDRC-HYGALN  111 (516)
T ss_pred             hHHHHHHhhcccHHHHHHHHHhCCCcchhhcccccHHHHHHHcCcHHHHHHHHHcCCcccccccCcchh-hhhhhh
Confidence            356889999999999999999999999999999999999999999999999999998444333445544 555544

>KOG0521|consensus

Probab=98.18  E-value=1.5e-06  Score=87.68  Aligned_cols=88  Identities=24%  Similarity=0.241  Sum_probs=81.7

Q ss_pred             CCCCHHHHHHHcCcHHHHHHHHHcCCCCCCccCcCCcHHHHHHHcCcHHHHHHHHhcccccccccccCCcHHHHHHHcCC
Q psy12891        420 TEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLGVTALHVAAYFGQ  499 (567)
Q Consensus       420 ~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~  499 (567)
                      .|.|+||.|+..+..-++++|+++|+++|..+..|+||+|.+...|+...+..|++.|++++..+..|++++++|....+
T Consensus       655 ~~~s~lh~a~~~~~~~~~e~ll~~ga~vn~~d~~g~~plh~~~~~g~~~~~~~ll~~~a~~~a~~~~~~~~l~~a~~~~~  734 (785)
T KOG0521|consen  655 IGCSLLHVAVGTGDSGAVELLLQNGADVNALDSKGRTPLHHATASGHTSIACLLLKRGADPNAFDPDGKLPLDIAMEAAN  734 (785)
T ss_pred             cccchhhhhhccchHHHHHHHHhcCCcchhhhccCCCcchhhhhhcccchhhhhccccccccccCccCcchhhHHhhhcc
Confidence            46799999999999999999999999999999999999999999999999999999999999999999999999988777


Q ss_pred             HHHHHHHH
Q psy12891        500 ADTVRELL  507 (567)
Q Consensus       500 ~~~~~~Ll  507 (567)
                      .+++-++.
T Consensus       735 ~d~~~l~~  742 (785)
T KOG0521|consen  735 ADIVLLLR  742 (785)
T ss_pred             ccHHHHHh
Confidence            66666544

>KOG0521|consensus

Probab=98.16  E-value=2e-06  Score=86.88  Aligned_cols=90  Identities=32%  Similarity=0.439  Sum_probs=76.5

Q ss_pred             CCCCChhhHHhhcCChhHHHHHHhhcCCCCChhhhHhhhcCchHHHHHHHhcCCCCCCCCCCCChHHHHHHHhCCHHHHH
Q psy12891          8 KLRETPLHIAARVKDGDRCALMLLKSGAGPNLTNIAARVKDGDRCALMLLKSGAGPNLTTDDGQTPVHAAAKYGNLVTLQ   87 (567)
Q Consensus         8 ~~~~t~L~~A~~~g~~~~v~~~L~~~g~~~~~~~~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~   87 (567)
                      ..|.|+||.|+..|..-.                           +++|++.|+++|.++..|+||||.+...|+...+.
T Consensus       654 ~~~~s~lh~a~~~~~~~~---------------------------~e~ll~~ga~vn~~d~~g~~plh~~~~~g~~~~~~  706 (785)
T KOG0521|consen  654 CIGCSLLHVAVGTGDSGA---------------------------VELLLQNGADVNALDSKGRTPLHHATASGHTSIAC  706 (785)
T ss_pred             hcccchhhhhhccchHHH---------------------------HHHHHhcCCcchhhhccCCCcchhhhhhcccchhh
Confidence            346788888888877553                           34588999999999999999999999999999999


Q ss_pred             HHHHcCCCCCCCCCCCCChhHHHHhcCchhHHHHHHH
Q psy12891         88 LLLEDGGDPMYKNKIGETPLHLASRNCKAEVVDLLIQ  124 (567)
Q Consensus        88 ~Ll~~ga~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~  124 (567)
                      .|+++|++.+..+..|.+|+++|....+.+++-++.-
T Consensus       707 ~ll~~~a~~~a~~~~~~~~l~~a~~~~~~d~~~l~~l  743 (785)
T KOG0521|consen  707 LLLKRGADPNAFDPDGKLPLDIAMEAANADIVLLLRL  743 (785)
T ss_pred             hhccccccccccCccCcchhhHHhhhccccHHHHHhh
Confidence            9999999999999999999999988866666655543

>KOG0520|consensus

Probab=97.95  E-value=2.9e-05  Score=78.13  Aligned_cols=132  Identities=20%  Similarity=0.212  Sum_probs=91.6

Q ss_pred             CCCCCCCCHHHHHHHcCcHHHHHHHHHc-CCCCCCccCcCCcHHHHHHHcCcHHHHHHHHhcccccccccccCCcHHHHH
Q psy12891        416 RNRVTEATPLQLAAEGGHANVVRVLVKA-GASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLGVTALHVA  494 (567)
Q Consensus       416 ~~~~~~~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A  494 (567)
                      .....|.+.+|+++..+..-+++.+++- |-.....+..|.-.+|+++..|..-.+....-.|..++.+|..|+||||+|
T Consensus       569 ~~~~r~~lllhL~a~~lyawLie~~~e~~~~~~~eld~d~qgV~hfca~lg~ewA~ll~~~~~~ai~i~D~~G~tpL~wA  648 (975)
T KOG0520|consen  569 SVNFRDMLLLHLLAELLYAWLIEKVIEWAGSGDLELDRDGQGVIHFCAALGYEWAFLPISADGVAIDIRDRNGWTPLHWA  648 (975)
T ss_pred             cCCCcchHHHHHHHHHhHHHHHHHHhcccccCchhhcccCCChhhHhhhcCCceeEEEEeecccccccccCCCCcccchH
Confidence            3344677888888888888888888774 555555666666677776555554444445566677788888888888888


Q ss_pred             HHcCCHHHHHHHHhcCCCCCCCCCCCCcccccccCCCCCCCHHHHHHHcCCHHHHHHHHh
Q psy12891        495 AYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVRLLLN  554 (567)
Q Consensus       495 ~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~  554 (567)
                      +..|+..++..|.+-+...-...++       ...+..|.|+-..|..+|+..+.-||=+
T Consensus       649 a~~G~e~l~a~l~~lga~~~~~tdp-------s~~~p~g~ta~~la~s~g~~gia~~lse  701 (975)
T KOG0520|consen  649 AFRGREKLVASLIELGADPGAVTDP-------SPETPGGKTAADLARANGHKGIAGYLSE  701 (975)
T ss_pred             hhcCHHHHHHHHHHhccccccccCC-------CCCCCCCCchhhhhhcccccchHHHHhh
Confidence            8888888888888666554433322       2334567888888888888877777754

>KOG0520|consensus

Probab=97.79  E-value=2.9e-05  Score=78.13  Aligned_cols=128  Identities=14%  Similarity=0.087  Sum_probs=100.2

Q ss_pred             ccccCCCCCcHHHHHHHcCCHHHHHHHHhc-CCCcccccCCCCCCCCHHHHHHHcCcHHHHHHHHH-cCCCCCCccCcCC
Q psy12891        378 VTATTKDGNTCAHIAAMQGSVGVIEELMKF-DRSGVISARNRVTEATPLQLAAEGGHANVVRVLVK-AGASCTDENKTGF  455 (567)
Q Consensus       378 ~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~-~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~~~g~  455 (567)
                      .......|++.+|+++..+...+++.+++. +.   ....-+.+|...+|+ |..+..+.+-+|+. .|..++.+|..|+
T Consensus       567 ~~~~~~r~~lllhL~a~~lyawLie~~~e~~~~---~~~eld~d~qgV~hf-ca~lg~ewA~ll~~~~~~ai~i~D~~G~  642 (975)
T KOG0520|consen  567 SSSVNFRDMLLLHLLAELLYAWLIEKVIEWAGS---GDLELDRDGQGVIHF-CAALGYEWAFLPISADGVAIDIRDRNGW  642 (975)
T ss_pred             cccCCCcchHHHHHHHHHhHHHHHHHHhccccc---CchhhcccCCChhhH-hhhcCCceeEEEEeecccccccccCCCC
Confidence            344556789999999999999999999985 22   223333456667777 55666666666654 7899999999999


Q ss_pred             cHHHHHHHcCcHHHHHHHHhcccccc------cccccCCcHHHHHHHcCCHHHHHHHHhc
Q psy12891        456 TAVHLAAQNGHNQVLEEMRSSKALNV------YSKKLGVTALHVAAYFGQADTVRELLSH  509 (567)
Q Consensus       456 t~l~~A~~~~~~~~v~~Ll~~~~~~~------~~~~~g~t~l~~A~~~~~~~~~~~Ll~~  509 (567)
                      ||||+|+.+|+..++..|.+.|++..      ...-.|.|+-..|..+|+..+..+|-+.
T Consensus       643 tpL~wAa~~G~e~l~a~l~~lga~~~~~tdps~~~p~g~ta~~la~s~g~~gia~~lse~  702 (975)
T KOG0520|consen  643 TPLHWAAFRGREKLVASLIELGADPGAVTDPSPETPGGKTAADLARANGHKGIAGYLSEK  702 (975)
T ss_pred             cccchHhhcCHHHHHHHHHHhccccccccCCCCCCCCCCchhhhhhcccccchHHHHhhh
Confidence            99999999999999999998887443      3345589999999999999888888764

>KOG2505|consensus

Probab=97.50  E-value=0.00027  Score=65.05  Aligned_cols=72  Identities=26%  Similarity=0.317  Sum_probs=59.0

Q ss_pred             chHHHHHHHhcCCCCCCC------CCCCChHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCChhHHHHhcCchhHHHHH
Q psy12891         49 GDRCALMLLKSGAGPNLT------TDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVVDLL  122 (567)
Q Consensus        49 ~~~~~~~Ll~~g~~~~~~------~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~~~~~iv~~L  122 (567)
                      .+..|++|.+++++.|-.      +.---|+||+|+..|..++|.+||+.|+|+..+|..|+||...+.   +.|+-..+
T Consensus       403 ~p~~ie~lken~lsgnf~~~pe~~~~ltsT~LH~aa~qg~~k~v~~~Leeg~Dp~~kd~~Grtpy~ls~---nkdVk~~F  479 (591)
T KOG2505|consen  403 EPDSIEALKENLLSGNFDVTPEANDYLTSTFLHYAAAQGARKCVKYFLEEGCDPSTKDGAGRTPYSLSA---NKDVKSIF  479 (591)
T ss_pred             chhHHHHHHhcCCcccccccccccccccchHHHHHHhcchHHHHHHHHHhcCCchhcccCCCCcccccc---cHHHHHHH
Confidence            356788999999887632      223559999999999999999999999999999999999999986   45554444


Q ss_pred             H
Q psy12891        123 I  123 (567)
Q Consensus       123 l  123 (567)
                      +
T Consensus       480 ~  480 (591)
T KOG2505|consen  480 I  480 (591)
T ss_pred             H
Confidence            4

>smart00248 ANK ankyrin repeats

Probab=97.29  E-value=0.0005  Score=37.21  Aligned_cols=29  Identities=52%  Similarity=0.829  Sum_probs=24.1

Q ss_pred             CCChHHHHHHHhCCHHHHHHHHHcCCCCC
Q psy12891         69 DGQTPVHAAAKYGNLVTLQLLLEDGGDPM   97 (567)
Q Consensus        69 ~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~   97 (567)
                      +|.||+|+|+..|+.+++++|++.|.+++
T Consensus         1 ~~~~~l~~~~~~~~~~~~~~ll~~~~~~~   29 (30)
T smart00248        1 DGRTPLHLAAENGNLEVVKLLLDKGADIN   29 (30)
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence            36789999999999999999998887653

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>smart00248 ANK ankyrin repeats

Probab=97.19  E-value=0.00064  Score=36.76  Aligned_cols=29  Identities=55%  Similarity=0.893  Sum_probs=25.9

Q ss_pred             CCCCHHHHHHHcCCHHHHHHHHhccCCccc
Q psy12891        532 SGMTPLHLAAYSGNENVVRLLLNSAGVQVD  561 (567)
Q Consensus       532 ~g~t~l~~A~~~~~~~~v~~Ll~~~g~~~~  561 (567)
                      .|.||+++|+..++.+++++|+++ |.+++
T Consensus         1 ~~~~~l~~~~~~~~~~~~~~ll~~-~~~~~   29 (30)
T smart00248        1 DGRTPLHLAAENGNLEVVKLLLDK-GADIN   29 (30)
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHc-CCCCC
Confidence            368999999999999999999986 87775

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>KOG2505|consensus

Probab=96.93  E-value=0.0016  Score=60.17  Aligned_cols=62  Identities=16%  Similarity=0.100  Sum_probs=48.7

Q ss_pred             HHHHHHHHHcCCCCCC------ccCcCCcHHHHHHHcCcHHHHHHHHhcccccccccccCCcHHHHHH
Q psy12891        434 ANVVRVLVKAGASCTD------ENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLGVTALHVAA  495 (567)
Q Consensus       434 ~~~v~~Ll~~g~~~~~------~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~  495 (567)
                      ...+++|.+++++.|.      .+...-|+||+|+..|..++|.+||+.|+|+..+|..|+||..++.
T Consensus       404 p~~ie~lken~lsgnf~~~pe~~~~ltsT~LH~aa~qg~~k~v~~~Leeg~Dp~~kd~~Grtpy~ls~  471 (591)
T KOG2505|consen  404 PDSIEALKENLLSGNFDVTPEANDYLTSTFLHYAAAQGARKCVKYFLEEGCDPSTKDGAGRTPYSLSA  471 (591)
T ss_pred             hhHHHHHHhcCCcccccccccccccccchHHHHHHhcchHHHHHHHHHhcCCchhcccCCCCcccccc
Confidence            5677888888777653      2334568888888888888888888888888888888888888776

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=96.73  E-value=0.018  Score=47.68  Aligned_cols=50  Identities=20%  Similarity=0.149  Sum_probs=32.7

Q ss_pred             CHHHHHHHHhcCCCCCCCCCCCCcccccccCCCCCCCHHHHHHHcCCHHHHHHHHhccCC
Q psy12891        499 QADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVRLLLNSAGV  558 (567)
Q Consensus       499 ~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~g~  558 (567)
                      +..++++++++|-..++..         -.+..+|.|.|+-|++.++.+++.+||++ |+
T Consensus       229 ~~kvL~~Fi~~Glv~vN~~---------F~~~NSGdtMLDNA~Ky~~~emi~~Llk~-GA  278 (284)
T PF06128_consen  229 SYKVLEYFINRGLVDVNKK---------FQKVNSGDTMLDNAMKYKNSEMIAFLLKY-GA  278 (284)
T ss_pred             cHHHHHHHHhccccccchh---------hhccCCcchHHHhHHhcCcHHHHHHHHHc-Cc
Confidence            4556666666655444333         23356777778888888888888888775 65

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses

Probab=96.64  E-value=0.012  Score=47.18  Aligned_cols=47  Identities=9%  Similarity=0.043  Sum_probs=22.1

Q ss_pred             HHHHHHcCCHHHHHHHHHhCCCCccccCCCCCcHHHHHHHcCCHHHHHHHH
Q psy12891        355 IHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIEELM  405 (567)
Q Consensus       355 L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll  405 (567)
                      +.-|+.++...+++..-+.-..    .-...++.+..||+..+.++|+|+-
T Consensus        50 l~HAVk~nmL~ILqkyke~L~~----~~~~~q~LFElAC~~qkydiV~WI~   96 (192)
T PF03158_consen   50 LYHAVKYNMLSILQKYKEDLEN----ERYLNQELFELACEEQKYDIVKWIG   96 (192)
T ss_pred             HHHHHHcCcHHHHHHHHHHhhc----chhHHHHHHHHHHHHccccHHHHHh
Confidence            3445555555555555543221    1123344445555555555555553

These proteins may be involved in promoting survival of infected macrophages [].

>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses

Probab=96.57  E-value=0.03  Score=44.98  Aligned_cols=73  Identities=10%  Similarity=-0.008  Sum_probs=53.5

Q ss_pred             CHHHHHHHcCcHHHHHHHHHcCCCCCCcCcCCCCHHHHHHHcCCHHHHHHHHHhCCCCccccCCCCCcHHHHHHHcCCHH
Q psy12891        320 TPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVG  399 (567)
Q Consensus       320 t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~  399 (567)
                      ..+.-|++.+.+.+++..-+...+-   -...++.+..||+..+.++++|+-..-.      -.+-.+.+..|....+++
T Consensus        48 CLl~HAVk~nmL~ILqkyke~L~~~---~~~~q~LFElAC~~qkydiV~WI~qnL~------i~~~~~iFdIA~~~kDls  118 (192)
T PF03158_consen   48 CLLYHAVKYNMLSILQKYKEDLENE---RYLNQELFELACEEQKYDIVKWIGQNLH------IYNPEDIFDIAFAKKDLS  118 (192)
T ss_pred             HHHHHHHHcCcHHHHHHHHHHhhcc---hhHHHHHHHHHHHHccccHHHHHhhccC------CCCchhhhhhhhhccchh
Confidence            3567799999999999888764321   2346678899999999999999965422      224456778888888877


Q ss_pred             HH
Q psy12891        400 VI  401 (567)
Q Consensus       400 ~~  401 (567)
                      +.
T Consensus       119 Ly  120 (192)
T PF03158_consen  119 LY  120 (192)
T ss_pred             HH
Confidence            63

These proteins may be involved in promoting survival of infected macrophages [].

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=96.28  E-value=0.03  Score=46.43  Aligned_cols=45  Identities=13%  Similarity=0.195  Sum_probs=23.8

Q ss_pred             HHHHHHHHHcC-CCCCC---ccCcCCcHHHHHHHcCcHHHHHHHHhccc
Q psy12891        434 ANVVRVLVKAG-ASCTD---ENKTGFTAVHLAAQNGHNQVLEEMRSSKA  478 (567)
Q Consensus       434 ~~~v~~Ll~~g-~~~~~---~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~  478 (567)
                      ..++++++++| +++|.   +-..|.|-|.-|+..++.+++..|+++||
T Consensus       230 ~kvL~~Fi~~Glv~vN~~F~~~NSGdtMLDNA~Ky~~~emi~~Llk~GA  278 (284)
T PF06128_consen  230 YKVLEYFINRGLVDVNKKFQKVNSGDTMLDNAMKYKNSEMIAFLLKYGA  278 (284)
T ss_pred             HHHHHHHHhccccccchhhhccCCcchHHHhHHhcCcHHHHHHHHHcCc
Confidence            34555555555 34442   23445555555555555555555555555

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=95.37  E-value=0.032  Score=38.65  Aligned_cols=53  Identities=17%  Similarity=0.174  Sum_probs=43.7

Q ss_pred             cHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcccccccCCCCCCCHHHHHHHcCCHHHHHHHHhccCCccc
Q psy12891        489 TALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVRLLLNSAGVQVD  561 (567)
Q Consensus       489 t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~g~~~~  561 (567)
                      ..+..|+..|+.|+++..++....                    -...+..|+..-+.+++++|+++...+++
T Consensus         8 ~tl~~Ai~GGN~eII~~c~~~~~~--------------------~~~~l~~AI~~H~n~i~~~l~~~y~~~i~   60 (76)
T PF11929_consen    8 KTLEYAIIGGNFEIINICLKKNKP--------------------DNDCLEYAIKSHNNEIADWLIENYNLKIS   60 (76)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHhcc--------------------HHHHHHHHHHHhhHHHHHHHHHhcCCCcC
Confidence            568999999999999999975321                    13579999999999999999998777654

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=95.11  E-value=0.096  Score=36.29  Aligned_cols=48  Identities=10%  Similarity=0.066  Sum_probs=34.5

Q ss_pred             cHHHHHHHcCcHHHHHHHHhcccccccccccCCcHHHHHHHcCCHHHHHHHHhcC
Q psy12891        456 TAVHLAAQNGHNQVLEEMRSSKALNVYSKKLGVTALHVAAYFGQADTVRELLSHV  510 (567)
Q Consensus       456 t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~  510 (567)
                      ..+..|+..|+.++++.+++.+. ++      ...+..|+..-+.++++||++..
T Consensus         8 ~tl~~Ai~GGN~eII~~c~~~~~-~~------~~~l~~AI~~H~n~i~~~l~~~y   55 (76)
T PF11929_consen    8 KTLEYAIIGGNFEIINICLKKNK-PD------NDCLEYAIKSHNNEIADWLIENY   55 (76)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHhc-cH------HHHHHHHHHHhhHHHHHHHHHhc
Confidence            45778888888888888876652 21      24678888888888888888763

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

>PLN03077 Protein ECB2; Provisional

Probab=93.79  E-value=12  Score=40.68  Aligned_cols=214  Identities=13%  Similarity=0.005  Sum_probs=101.1

Q ss_pred             HHHcCcHH----HHHHHHHcCCCCCCcCcCCCCHHHHHHHcCCHHHHHHHHHhCCCCccccCCCCCcHHHH-HHHcCCHH
Q psy12891        325 AAEAGQLQ----VCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHI-AAMQGSVG  399 (567)
Q Consensus       325 a~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~-a~~~~~~~  399 (567)
                      .+..|..+    +.+.+++.|..++..-  ..+.+...++.|..+-+..+++.-..    .+...++.+.. .+..+..+
T Consensus       399 ~~~~g~~~~a~~l~~~~~~~g~~~~~~~--~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~vs~~~mi~~~~~~g~~~  472 (857)
T PLN03077        399 CACLGDLDVGVKLHELAERKGLISYVVV--ANALIEMYSKCKCIDKALEVFHNIPE----KDVISWTSIIAGLRLNNRCF  472 (857)
T ss_pred             HhccchHHHHHHHHHHHHHhCCCcchHH--HHHHHHHHHHcCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHCCCHH
Confidence            34445544    4455555666543221  22344555677887777777765432    22233344433 23444443


Q ss_pred             H-HHHHHhcCCCcccccCCCCCCCCHHHHHHHcCcHH----HHHHHHHcCCCCCCccCcCCcHHHHHHHcCcHHHHHHHH
Q psy12891        400 V-IEELMKFDRSGVISARNRVTEATPLQLAAEGGHAN----VVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMR  474 (567)
Q Consensus       400 ~-~~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll  474 (567)
                      - ++.+-+.. ...  ......-.+.|...+..|..+    +....++.|...+...  +...+..-++.|+.+-+..+.
T Consensus       473 eA~~lf~~m~-~~~--~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~--~naLi~~y~k~G~~~~A~~~f  547 (857)
T PLN03077        473 EALIFFRQML-LTL--KPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFL--PNALLDLYVRCGRMNYAWNQF  547 (857)
T ss_pred             HHHHHHHHHH-hCC--CCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCcccee--chHHHHHHHHcCCHHHHHHHH
Confidence            2 22222211 110  000001113344445556654    4445556676665432  345566667788887665555


Q ss_pred             hcccccccccccCCcHHH-HHHHcCCHHHHHHHHhcCCCCCCCCCCCCcccccccCCCCCCCHH-HHHHHcCCHHHHHHH
Q psy12891        475 SSKALNVYSKKLGVTALH-VAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPL-HLAAYSGNENVVRLL  552 (567)
Q Consensus       475 ~~~~~~~~~~~~g~t~l~-~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l-~~A~~~~~~~~v~~L  552 (567)
                      +.-    .+|...++.+. .-+..|+.+-+..+++.-...-            ..+|..-.+.+ ......|..+-..-+
T Consensus       548 ~~~----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g------------~~Pd~~T~~~ll~a~~~~g~v~ea~~~  611 (857)
T PLN03077        548 NSH----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESG------------VNPDEVTFISLLCACSRSGMVTQGLEY  611 (857)
T ss_pred             Hhc----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcC------------CCCCcccHHHHHHHHhhcChHHHHHHH
Confidence            443    23333444443 3446677766666655311110            11122233343 444556776554443


Q ss_pred             ----HhccCCccccccc
Q psy12891        553 ----LNSAGVQVDAQTQ  565 (567)
Q Consensus       553 ----l~~~g~~~~~~~~  565 (567)
                          .+..|+.|+...+
T Consensus       612 f~~M~~~~gi~P~~~~y  628 (857)
T PLN03077        612 FHSMEEKYSITPNLKHY  628 (857)
T ss_pred             HHHHHHHhCCCCchHHH
Confidence                3346888876543

>PLN03218 maturation of RBCL 1; Provisional

Probab=92.77  E-value=5.4  Score=43.72  Aligned_cols=109  Identities=9%  Similarity=0.087  Sum_probs=55.7

Q ss_pred             ChhhHHhhcCChhHHHH---HHhhcCCCCChhhh-----HhhhcCch----HHHHHHHhcCCCCCCCCCCCChHHHHHHH
Q psy12891         12 TPLHIAARVKDGDRCAL---MLLKSGAGPNLTNI-----AARVKDGD----RCALMLLKSGAGPNLTTDDGQTPVHAAAK   79 (567)
Q Consensus        12 t~L~~A~~~g~~~~v~~---~L~~~g~~~~~~~~-----~a~~~~~~----~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~   79 (567)
                      +.|...+..|+.+....   .+.+.|..|+...+     ..+..+..    ++.+.+.+.|..+|...  ..+.+...++
T Consensus       442 ~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvT--ynaLI~gy~k  519 (1060)
T PLN03218        442 MLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHT--FGALIDGCAR  519 (1060)
T ss_pred             HHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHH--HHHHHHHHHH
Confidence            45555666677665444   34567777775442     11222222    34555556676665432  1234445566


Q ss_pred             hCCHH----HHHHHHHcCCCCCCCCCCCCChhHHHHhcCchhHHHHHHH
Q psy12891         80 YGNLV----TLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVVDLLIQ  124 (567)
Q Consensus        80 ~g~~~----~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~  124 (567)
                      .|+.+    +++.+.+.|..++....  .+.+...++.|..+-+..+++
T Consensus       520 ~G~~eeAl~lf~~M~~~Gv~PD~vTY--nsLI~a~~k~G~~deA~~lf~  566 (1060)
T PLN03218        520 AGQVAKAFGAYGIMRSKNVKPDRVVF--NALISACGQSGAVDRAFDVLA  566 (1060)
T ss_pred             CcCHHHHHHHHHHHHHcCCCCCHHHH--HHHHHHHHHCCCHHHHHHHHH
Confidence            67654    33444456665543221  244555566666655555544

>PLN03077 Protein ECB2; Provisional

Probab=91.95  E-value=22  Score=38.77  Aligned_cols=76  Identities=12%  Similarity=0.194  Sum_probs=41.1

Q ss_pred             HHHHHHHHHcCCCccccccCCCccHHHHHHhcCCHHHHHHHHHhccCcchhhhhhcCCCCCChHH-HHHHhcCcHH----
Q psy12891        169 QKTVKLLLEAGADVSLQTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPL-LIACNRGHME----  243 (567)
Q Consensus       169 ~~~v~~Ll~~g~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~L-~~A~~~~~~~----  243 (567)
                      .++.....+.|..++....   .+.+...++.|+.+-+..+++....         ++...++.+ ...++.|+.+    
T Consensus       308 ~~l~~~~~~~g~~~d~~~~---n~Li~~y~k~g~~~~A~~vf~~m~~---------~d~~s~n~li~~~~~~g~~~~A~~  375 (857)
T PLN03077        308 REMHGYVVKTGFAVDVSVC---NSLIQMYLSLGSWGEAEKVFSRMET---------KDAVSWTAMISGYEKNGLPDKALE  375 (857)
T ss_pred             HHHHHHHHHhCCccchHHH---HHHHHHHHhcCCHHHHHHHHhhCCC---------CCeeeHHHHHHHHHhCCCHHHHHH
Confidence            3455666666766553321   4556666777888777777776432         222233443 3335555544    


Q ss_pred             HHHHHHhCCCCCC
Q psy12891        244 LVNTMLNNHARVD  256 (567)
Q Consensus       244 ~v~~Ll~~g~~~~  256 (567)
                      +++.+.+.|..++
T Consensus       376 lf~~M~~~g~~Pd  388 (857)
T PLN03077        376 TYALMEQDNVSPD  388 (857)
T ss_pred             HHHHHHHhCCCCC
Confidence            4444445565554

>PLN03218 maturation of RBCL 1; Provisional

Probab=90.92  E-value=14  Score=40.71  Aligned_cols=39  Identities=21%  Similarity=0.283  Sum_probs=18.6

Q ss_pred             HHHHHHHHHcCCCccccccCCCccHHHHHHhcCCHHHHHHHH
Q psy12891        169 QKTVKLLLEAGADVSLQTKQNHETAFHYCAVAGNNDVLTGML  210 (567)
Q Consensus       169 ~~~v~~Ll~~g~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll  210 (567)
                      .++++.+.+.|..++....   .+.+...++.|+.+-+..++
T Consensus       492 ~~vf~eM~~~Gv~PdvvTy---naLI~gy~k~G~~eeAl~lf  530 (1060)
T PLN03218        492 FEVFHEMVNAGVEANVHTF---GALIDGCARAGQVAKAFGAY  530 (1060)
T ss_pred             HHHHHHHHHcCCCCCHHHH---HHHHHHHHHCcCHHHHHHHH
Confidence            3445555555555443221   33445555666654443333

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=90.05  E-value=28  Score=36.77  Aligned_cols=147  Identities=8%  Similarity=0.078  Sum_probs=68.3

Q ss_pred             HHHcCc----HHHHHHHHHcCCCCCCcCcCCCCHHHHHHHcCCHHHHHHHHHhCCCC-ccccCC-CCCcHHHHHHHcCCH
Q psy12891        325 AAEAGQ----LQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSL-VTATTK-DGNTCAHIAAMQGSV  398 (567)
Q Consensus       325 a~~~~~----~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~-~~~~~~-~~~~~l~~a~~~~~~  398 (567)
                      .++.|.    .++++.+.+.|..++....  .+.|...+..|..+-...+++..... ....+. .....+...++.|..
T Consensus       401 y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~--~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~  478 (697)
T PLN03081        401 YGNHGRGTKAVEMFERMIAEGVAPNHVTF--LAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLL  478 (697)
T ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCCHHHH--HHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCH
Confidence            344554    3466666677877764431  22344444556666555554432110 001111 112334455677777


Q ss_pred             HHHHHHHhcCCCcccccCCCCCCC-CHHHHHHHcCcHHHHHHHHHcCCCCCCccCcCC-cHHHHHHHcCcHH----HHHH
Q psy12891        399 GVIEELMKFDRSGVISARNRVTEA-TPLQLAAEGGHANVVRVLVKAGASCTDENKTGF-TAVHLAAQNGHNQ----VLEE  472 (567)
Q Consensus       399 ~~~~~ll~~~~~~~~~~~~~~~~~-t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~-t~l~~A~~~~~~~----~v~~  472 (567)
                      +-...+++....     ..+..-. +.|..++..|+.+..+...+.-..+...+.... .....-+..|..+    +.+.
T Consensus       479 ~eA~~~~~~~~~-----~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~  553 (697)
T PLN03081        479 DEAYAMIRRAPF-----KPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVET  553 (697)
T ss_pred             HHHHHHHHHCCC-----CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHH
Confidence            766666653211     0000111 334444567888876666554222222222222 2333445666664    4455


Q ss_pred             HHhccc
Q psy12891        473 MRSSKA  478 (567)
Q Consensus       473 Ll~~~~  478 (567)
                      +.+.|.
T Consensus       554 m~~~g~  559 (697)
T PLN03081        554 LKRKGL  559 (697)
T ss_pred             HHHcCC
Confidence            555554

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	567
1n11_A	437	D34 Region Of Human Ankyrin-R And Linker Length = 4		1e-32
1n11_A	437	D34 Region Of Human Ankyrin-R And Linker Length = 4		2e-30
1n11_A	437	D34 Region Of Human Ankyrin-R And Linker Length = 4		1e-20
1n11_A	437	D34 Region Of Human Ankyrin-R And Linker Length = 4		3e-08
1n0r_A	126	4ank: A Designed Ankyrin Repeat Protein With Four I		3e-19
1n0r_A	126	4ank: A Designed Ankyrin Repeat Protein With Four I		2e-14
3zu7_B	169	Crystal Structure Of A Designed Selected Ankyrin Re		6e-19
3zu7_B	169	Crystal Structure Of A Designed Selected Ankyrin Re		8e-08
2xeh_A	157	Structural Determinants For Improved Thermal Stabil		1e-18
2xeh_A	157	Structural Determinants For Improved Thermal Stabil		9e-13
2xee_A	157	Structural Determinants For Improved Thermal Stabil		2e-18
2xee_A	157	Structural Determinants For Improved Thermal Stabil		3e-13
2qyj_A	166	Crystal Structure Of A Designed Full Consensus Anky		5e-18
2qyj_A	166	Crystal Structure Of A Designed Full Consensus Anky		3e-11
3b7b_A	237	Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Le		4e-17
3b7b_A	237	Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Le		5e-07
2v5q_C	167	Crystal Structure Of Wild-type Plk-1 Kinase Domain		7e-17
2v5q_C	167	Crystal Structure Of Wild-type Plk-1 Kinase Domain		4e-09
2bkk_B	169	Crystal Structure Of Aminoglycoside Phosphotransfer		2e-16
2bkk_B	169	Crystal Structure Of Aminoglycoside Phosphotransfer		2e-10
2bkg_A	166	Crystal Structure Of E3_19 An Designed Ankyrin Repe		9e-16
2bkg_A	166	Crystal Structure Of E3_19 An Designed Ankyrin Repe		2e-08
3utm_A	351	Crystal Structure Of A Mouse Tankyrase-Axin Complex		1e-15
3utm_A	351	Crystal Structure Of A Mouse Tankyrase-Axin Complex		5e-05
4gmr_A	169	Crystal Structure Of Engineered Protein. Northeast		1e-15
1mj0_A	166	Sank E3_5: An Artificial Ankyrin Repeat Protein Len		2e-15
1mj0_A	166	Sank E3_5: An Artificial Ankyrin Repeat Protein Len		7e-11
4hb5_A	169	Crystal Structure Of Engineered Protein. Northeast		2e-15
4hb5_A	169	Crystal Structure Of Engineered Protein. Northeast		7e-14
2p2c_P	169	Inhibition Of Caspase-2 By A Designed Ankyrin Repea		4e-15
2p2c_P	169	Inhibition Of Caspase-2 By A Designed Ankyrin Repea		2e-10
4dui_A	169	Darpin D1 Binding To Tubulin Beta Chain (not In Com		7e-15
4dui_A	169	Darpin D1 Binding To Tubulin Beta Chain (not In Com		1e-08
4drx_E	169	Gtp-Tubulin In Complex With A Darpin Length = 169		1e-14
4drx_E	169	Gtp-Tubulin In Complex With A Darpin Length = 169		4e-09
3q9u_C	158	In Silico And In Vitro Co-Evolution Of A High Affin		1e-14
3q9u_C	158	In Silico And In Vitro Co-Evolution Of A High Affin		7e-12
4atz_D	154	Ad5 Knob In Complex With A Designed Ankyrin Repeat		3e-14
4atz_D	154	Ad5 Knob In Complex With A Designed Ankyrin Repeat		8e-09
4hqd_A	169	Crystal Structure Of Engineered Protein. Northeast		7e-14
4hqd_A	169	Crystal Structure Of Engineered Protein. Northeast		4e-13
4hqd_A	169	Crystal Structure Of Engineered Protein. Northeast		6e-12
3nog_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		7e-14
3nog_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		6e-10
2j8s_D	169	Drug Export Pathway Of Multidrug Exporter Acrb Reve		8e-14
2j8s_D	169	Drug Export Pathway Of Multidrug Exporter Acrb Reve		7e-13
2j8s_D	169	Drug Export Pathway Of Multidrug Exporter Acrb Reve		2e-11
2y1l_E	169	Caspase-8 In Complex With Darpin-8.4 Length = 169		9e-14
2y1l_E	169	Caspase-8 In Complex With Darpin-8.4 Length = 169		1e-10
1n0q_A	93	3ank: A Designed Ankyrin Repeat Protein With Three		1e-13
1n0q_A	93	3ank: A Designed Ankyrin Repeat Protein With Three		4e-10
1n0q_A	93	3ank: A Designed Ankyrin Repeat Protein With Three		7e-06
4gpm_A	169	Crystal Structure Of Engineered Protein. Northeast		1e-13
4gpm_A	169	Crystal Structure Of Engineered Protein. Northeast		7e-13
3noc_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		2e-13
3noc_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		2e-11
1svx_A	169	Crystal Structure Of A Designed Selected Ankyrin Re		2e-13
1svx_A	169	Crystal Structure Of A Designed Selected Ankyrin Re		1e-11
1qym_A	227	X-Ray Structure Of Human Gankyrin Length = 227		1e-12
1qym_A	227	X-Ray Structure Of Human Gankyrin Length = 227		2e-04
1uoh_A	226	Human Gankyrin Length = 226		2e-12
1uoh_A	226	Human Gankyrin Length = 226		2e-04
4f6r_D	169	Tubulin:stathmin-Like Domain Complex Length = 169		9e-12
4f6r_D	169	Tubulin:stathmin-Like Domain Complex Length = 169		3e-11
4f6r_D	169	Tubulin:stathmin-Like Domain Complex Length = 169		8e-11
1awc_B	153	Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA Length = 1		7e-11
1awc_B	153	Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA Length = 1		4e-10
1awc_B	153	Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA Length = 1		2e-05
2dvw_A	231	Structure Of The Oncoprotein Gankyrin In Complex Wi		7e-11
2dvw_A	231	Structure Of The Oncoprotein Gankyrin In Complex Wi		1e-04
3aji_A	231	Structure Of Gankyrin-S6atpase Photo-Cross-Linked S		1e-10
3aji_A	231	Structure Of Gankyrin-S6atpase Photo-Cross-Linked S		2e-10
3aji_A	231	Structure Of Gankyrin-S6atpase Photo-Cross-Linked S		1e-04
1nfi_E	213	I-Kappa-B-AlphaNF-Kappa-B Complex Length = 213		3e-10
1wdy_A	285	Crystal Structure Of Ribonuclease Length = 285		3e-10
1wdy_A	285	Crystal Structure Of Ribonuclease Length = 285		5e-04
2dzn_A	228	Crystal Structure Analysis Of Yeast Nas6p Complexed		4e-10
1ixv_A	231	Crystal Structure Analysis Of Homolog Of Oncoprotei		4e-10
1wg0_A	243	Structural Comparison Of Nas6p Protein Structures I		4e-10
1ikn_D	236	IkappabalphaNF-Kappab Complex Length = 236		5e-10
2l6b_A	115	Nrc Consensus Ankyrin Repeat Protein Solution Struc		7e-10
2l6b_A	115	Nrc Consensus Ankyrin Repeat Protein Solution Struc		5e-06
4g8k_A	337	Intact Sensor Domain Of Human Rnase L In The Inacti		9e-10
4g8k_A	337	Intact Sensor Domain Of Human Rnase L In The Inacti		7e-04
3eu9_A	240	The Ankyrin Repeat Domain Of Huntingtin Interacting		2e-09
3eu9_A	240	The Ankyrin Repeat Domain Of Huntingtin Interacting		2e-07
1s70_B	299	Complex Between Protein Ser/thr Phosphatase-1 (delt		3e-09
2v4h_C	136	Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 13		3e-09
2v4h_C	136	Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 13		1e-05
2he0_A	253	Crystal Structure Of A Human Notch1 Ankyrin Domain		4e-09
2he0_A	253	Crystal Structure Of A Human Notch1 Ankyrin Domain		1e-04
2f8y_A	223	Crystal Structure Of Human Notch1 Ankyrin Repeats T		6e-09
2f8y_A	223	Crystal Structure Of Human Notch1 Ankyrin Repeats T		3e-05
2f8x_K	256	Crystal Structure Of Activated Notch, Csl And Maml		6e-09
2f8x_K	256	Crystal Structure Of Activated Notch, Csl And Maml		4e-05
1k1b_A	241	Crystal Structure Of The Ankyrin Repeat Domain Of B		6e-09
1yyh_A	253	Crystal Structure Of The Human Notch 1 Ankyrin Doma		7e-09
1yyh_A	253	Crystal Structure Of The Human Notch 1 Ankyrin Doma		4e-05
4grg_A	135	Crystal Structure Of Ige Complexed With E2_79, An A		1e-08
4grg_A	135	Crystal Structure Of Ige Complexed With E2_79, An A		2e-07
4grg_A	135	Crystal Structure Of Ige Complexed With E2_79, An A		4e-05
3zuv_B	136	Crystal Structure Of A Designed Selected Ankyrin Re		1e-08
3zuv_B	136	Crystal Structure Of A Designed Selected Ankyrin Re		3e-08
3zuv_B	136	Crystal Structure Of A Designed Selected Ankyrin Re		3e-07
2y0b_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4_		1e-08
2y0b_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4_		1e-07
2y0b_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4_		6e-07
2y0b_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4_		7e-06
1ap7_A	168	P19-Ink4d From Mouse, Nmr, 20 Structures Length = 1		1e-08
1ap7_A	168	P19-Ink4d From Mouse, Nmr, 20 Structures Length = 1		6e-04
2xzd_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4		1e-08
2xzd_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4		8e-08
2xzd_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4		3e-06
2xzd_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4		8e-06
1blx_B	166	P19ink4dCDK6 COMPLEX Length = 166		1e-08
1blx_B	166	P19ink4dCDK6 COMPLEX Length = 166		5e-04
2qc9_A	210	Mouse Notch 1 Ankyrin Repeat Intracellular Domain L		2e-08
2qc9_A	210	Mouse Notch 1 Ankyrin Repeat Intracellular Domain L		4e-05
2rfm_A	192	Structure Of A Thermophilic Ankyrin Repeat Protein		2e-08
2xzt_G	136	Caspase-3 In Complex With Darpin-3.4_i78s Length =		4e-08
2xzt_G	136	Caspase-3 In Complex With Darpin-3.4_i78s Length =		4e-08
2xzt_G	136	Caspase-3 In Complex With Darpin-3.4_i78s Length =		4e-06
1bd8_A	156	Structure Of Cdk Inhibitor P19ink4d Length = 156		5e-08
1bd8_A	156	Structure Of Cdk Inhibitor P19ink4d Length = 156		1e-05
1bi8_B	166	Mechanism Of G1 Cyclin Dependent Kinase Inhibition		5e-08
1bi8_B	166	Mechanism Of G1 Cyclin Dependent Kinase Inhibition		1e-05
4b93_B	269	Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyri		7e-08
4b93_B	269	Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyri		4e-05
2rfa_A	232	Crystal Structure Of The Mouse Trpv6 Ankyrin Repeat		7e-08
3twq_A	175	Crystal Structure Of Arc4 From Human Tankyrase 2 (A		1e-07
3hg0_D	136	Crystal Structure Of A Darpin In Complex With Orf49		1e-07
3twr_A	165	Crystal Structure Of Arc4 From Human Tankyrase 2 In		2e-07
3twu_A	167	Crystal Structure Of Arc4 From Human Tankyrase 2 In		2e-07
3f6q_A	179	Crystal Structure Of Integrin-Linked Kinase Ankyrin		2e-07
3f6q_A	179	Crystal Structure Of Integrin-Linked Kinase Ankyrin		1e-05
3f6q_A	179	Crystal Structure Of Integrin-Linked Kinase Ankyrin		2e-05
2kbx_A	171	Solution Structure Of Ilk-Pinch Complex Length = 17		2e-07
2kbx_A	171	Solution Structure Of Ilk-Pinch Complex Length = 17		2e-05
3c5r_A	137	Crystal Structure Of The Bard1 Ankyrin Repeat Domai		4e-07
3c5r_A	137	Crystal Structure Of The Bard1 Ankyrin Repeat Domai		1e-04
2fo1_E	373	Crystal Structure Of The Csl-Notch-Mastermind Terna		6e-07
2jab_A	136	A Designed Ankyrin Repeat Protein Evolved To Picomo		1e-06
2jab_A	136	A Designed Ankyrin Repeat Protein Evolved To Picomo		2e-05
3v2x_A	167	Crystal Structure Of The Peptide Bound Complex Of T		2e-06
3v2x_A	167	Crystal Structure Of The Peptide Bound Complex Of T		7e-05
3so8_A	162	Crystal Structure Of Ankra Length = 162		2e-06
3so8_A	162	Crystal Structure Of Ankra Length = 162		6e-05
3v2o_A	183	Crystal Structure Of The Peptide Bound Complex Of T		2e-06
3v2o_A	183	Crystal Structure Of The Peptide Bound Complex Of T		7e-05
1ot8_A	239	Structure Of The Ankyrin Domain Of The Drosophila N		2e-06
1mx6_A	168	Structure Of P18ink4c (F92n) Length = 168		6e-06
1mx2_A	168	Structure Of F71n Mutant Of P18ink4c Length = 168		9e-06
1mx4_A	168	Structure Of P18ink4c (F82q) Length = 168		1e-05
1mx4_A	168	Structure Of P18ink4c (F82q) Length = 168		1e-04
3ehq_A	222	Crystal Structure Of Human Osteoclast Stimulating F		1e-05
1ihb_A	162	Crystal Structure Of P18-Ink4c(Ink6) Length = 162		1e-05
3zkj_A	261	Crystal Structure Of Ankyrin Repeat And Socs Box-co		2e-05
1bu9_A	168	Solution Structure Of P18-Ink4c, 21 Structures Leng		2e-05
3d9h_A	285	Crystal Structure Of The Splice Variant Of Human As		2e-05
2zgg_A	92	Asn-Hydroxylation Stabilises The Ankyrin Repeat Dom		5e-05
2zgg_A	92	Asn-Hydroxylation Stabilises The Ankyrin Repeat Dom		3e-04
1ymp_A	135	The Crystal Structure Of A Partial Mouse Notch-1 An		8e-05
3hra_A	201	Crystal Structure Of Ef0377 An Ankyrin Repeat Prote		8e-05
2xen_A	91	Structural Determinants For Improved Thermal Stabil		1e-04
2zgd_A	110	Asn-Hydroxylation Stabilises The Ankyrin Repeat Dom		1e-04
2zgd_A	110	Asn-Hydroxylation Stabilises The Ankyrin Repeat Dom		1e-04
3v30_A	172	Crystal Structure Of The Peptide Bound Complex Of T		3e-04
4a63_B	239	Crystal Structure Of The P73-Aspp2 Complex At 2.6a		4e-04
1ycs_B	239	P53-53bp2 Complex Length = 239		4e-04
3ljn_A	364	Ankyrin Repeat Protein From Leishmania Major Length		5e-04
3uxg_A	172	Crystal Structure Of Rfxank Length = 172		5e-04

>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker Length = 437

Iteration: 1
 Score =  137 bits (346), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 127/433 (29%), Positives = 199/433 (45%), Gaps = 66/433 (15%)
Query: 72  TPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVVDLLIQFVQNISQ 131
           TP+H A+  G+L  ++ LL+ G  P   N   ETPLH+A+R    EV   L+Q     ++
Sbjct: 16  TPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQ-----NK 70
Query: 132 EKVLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGADVSLQTKQNHE 191
            K    VN+  +D  + LH A ++    +           VKLLLE  A+ +L T   H 
Sbjct: 71  AK----VNAKAKDDQTPLHCAARIGHTNM-----------VKLLLENNANPNLATTAGH- 114
Query: 192 TAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIACNRGHMELVNTMLNN 251
           T  H  A  G+ + +  +LE+    E S+A    T  G+TPL +A   G + +   +L  
Sbjct: 115 TPLHIAAREGHVETVLALLEK----EASQAC--MTKKGFTPLHVAAKYGKVRVAELLLER 168
Query: 252 HARVDVFDQEGRSALHLAAEHGYLKVSSGKSLKHSVMSFRLP----PHNIIPNGFLVHDH 307
            A  +   + G + LH+A  H  L           ++   LP    PH+   NG+     
Sbjct: 169 DAHPNAAGKNGLTPLHVAVHHNNL----------DIVKLLLPRGGSPHSPAWNGY----- 213
Query: 308 AAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVA 367
                       TPLH+AA+  Q++V + LL  G S +A   QG  P+H+AAQ    E+ 
Sbjct: 214 ------------TPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMV 261
Query: 368 QIFL--RAHPSLVTATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPL 425
            + L  +A+ +L     K G T  H+ A +G V V + L+K    GV+         TPL
Sbjct: 262 ALLLSKQANGNL---GNKSGLTPLHLVAQEGHVPVADVLIKH---GVMVDATTRMGYTPL 315
Query: 426 QLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKK 485
            +A+  G+  +V+ L++  A    + K G++ +H AAQ GH  ++  +  + A       
Sbjct: 316 HVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSS 375
Query: 486 LGVTALHVAAYFG 498
            G T L +A   G
Sbjct: 376 DGTTPLAIAKRLG 388

>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker Length = 437

Iteration: 1
 Score =  130 bits (327), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 115/384 (29%), Positives = 188/384 (48%), Gaps = 47/384 (12%)
Query: 172 VKLLLEAGADVSLQTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWT 231
           VK LL+ GA  ++   +  ET  H  A AG+ +V   +L+  +    +KA + QT     
Sbjct: 30  VKNLLQRGASPNVSNVKV-ETPLHMAARAGHTEVAKYLLQNKAKVN-AKAKDDQT----- 82
Query: 232 PLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVSSGKSLKHSVMSFR 291
           PL  A   GH  +V  +L N+A  ++    G + LH+AA  G+++         +V++  
Sbjct: 83  PLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVE---------TVLALL 133
Query: 292 LPPHNIIPNGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQG 351
                         +  A    +T +  TPLH+AA+ G+++V +LLL+  A  +A    G
Sbjct: 134 --------------EKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNG 179
Query: 352 QKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIEELMKFDRSG 411
             P+HVA  +N  ++ ++ L    S   +   +G T  HIAA Q  V V   L+++  S 
Sbjct: 180 LTPLHVAVHHNNLDIVKLLLPRGGS-PHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGS- 237
Query: 412 VISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLE 471
             +    V   TPL LAA+ GHA +V +L+   A+    NK+G T +HL AQ GH  V +
Sbjct: 238 --ANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVAD 295
Query: 472 EMRSSKALNVYSKKLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSE 531
            +     +   + ++G T LHVA+++G    V+ LL H     ++D            ++
Sbjct: 296 VLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQH-----QADV--------NAKTK 342
Query: 532 SGMTPLHLAAYSGNENVVRLLLNS 555
            G +PLH AA  G+ ++V LLL +
Sbjct: 343 LGYSPLHQAAQQGHTDIVTLLLKN 366

>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker Length = 437

Iteration: 1
 Score = 97.8 bits (242), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 82/240 (34%), Positives = 119/240 (49%), Gaps = 21/240 (8%)
Query: 320 TPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVT 379
           TPLH+A+  G L + K LL  GAS + ++ + + P+H+AA+    EVA+  L+ + + V 
Sbjct: 16  TPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQ-NKAKVN 74
Query: 380 ATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEA--TPLQLAAEGGHANVV 437
           A  KD  T  H AA  G   +++ L++ + +      N  T A  TPL +AA  GH   V
Sbjct: 75  AKAKDDQTPLHCAARIGHTNMVKLLLENNAN-----PNLATTAGHTPLHIAAREGHVETV 129
Query: 438 RVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLGVTALHVAAYF 497
             L++  AS     K GFT +H+AA+ G  +V E +    A    + K G+T LHVA + 
Sbjct: 130 LALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHH 189
Query: 498 GQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVRLLLNSAG 557
              D V+ LL           P G S      + +G TPLH+AA      V R LL   G
Sbjct: 190 NNLDIVKLLL-----------PRGGS--PHSPAWNGYTPLHIAAKQNQVEVARSLLQYGG 236

>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker Length = 437

Iteration: 1
 Score = 57.0 bits (136), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 45/137 (32%), Positives = 67/137 (48%), Gaps = 13/137 (9%)
Query: 423 TPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVY 482
           TPL +A+  GH  +V+ L++ GAS    N    T +H+AA+ GH +V + +  +KA    
Sbjct: 16  TPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNA 75
Query: 483 SKKLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAY 542
             K   T LH AA  G  + V+ LL +      ++P         L + +G TPLH+AA 
Sbjct: 76  KAKDDQTPLHCAARIGHTNMVKLLLEN-----NANP--------NLATTAGHTPLHIAAR 122
Query: 543 SGNENVVRLLLNSAGVQ 559
            G+   V  LL     Q
Sbjct: 123 EGHVETVLALLEKEASQ 139

>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four Identical Consensus Repeats Length = 126

Iteration: 1
 Score = 93.2 bits (230), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 54/127 (42%), Positives = 81/127 (63%), Gaps = 4/127 (3%)
Query: 319 QTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLV 378
           +TPLHLAA  G L+V KLLL+ GA ++A D  G+ P+H+AA+N   EV ++ L A    V
Sbjct: 3   RTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD-V 61
Query: 379 TATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVR 438
            A  K+G T  H+AA  G + V++ L+  +    ++A+++    TPL LAA  GH  VV+
Sbjct: 62  NAKDKNGRTPLHLAARNGHLEVVKLLL--EAGADVNAKDK-NGRTPLHLAARNGHLEVVK 118
Query: 439 VLVKAGA 445
           +L++AGA
Sbjct: 119 LLLEAGA 125

>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four Identical Consensus Repeats Length = 126

Iteration: 1
 Score = 77.4 bits (189), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 53/133 (39%), Positives = 76/133 (57%), Gaps = 13/133 (9%)
Query: 423 TPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVY 482
           TPL LAA  GH  VV++L++AGA    ++K G T +HLAA+NGH +V++ +  + A    
Sbjct: 4   TPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNA 63
Query: 483 SKKLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAY 542
             K G T LH+AA  G  + V+ LL             GA    +   ++G TPLHLAA 
Sbjct: 64  KDKNGRTPLHLAARNGHLEVVKLLLE-----------AGADVNAK--DKNGRTPLHLAAR 110
Query: 543 SGNENVVRLLLNS 555
           +G+  VV+LLL +
Sbjct: 111 NGHLEVVKLLLEA 123

>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Map Kinase Erk2 Length = 169

Iteration: 1
 Score = 92.4 bits (228), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 55/147 (37%), Positives = 86/147 (58%), Gaps = 4/147 (2%)
Query: 325 AAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKD 384
           AA AGQ    ++L+  GA ++A DDQG  P+H+AA    PE+ ++ L+ H + V A   D
Sbjct: 21  AARAGQDDEVRILMANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLK-HGADVNARDTD 79
Query: 385 GNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAG 444
           G T  H+AA  G + ++E L+K+     ++A++     TPL LAA+ GH  +V VL+K G
Sbjct: 80  GWTPLHLAADNGHLEIVEVLLKY--GADVNAQDAYG-LTPLHLAADRGHLEIVEVLLKHG 136
Query: 445 ASCTDENKTGFTAVHLAAQNGHNQVLE 471
           A    ++K G TA  ++  NG+  + E
Sbjct: 137 ADVNAQDKFGKTAFDISIDNGNEDLAE 163

>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Map Kinase Erk2 Length = 169

Iteration: 1
 Score = 55.5 bits (132), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 45/138 (32%), Positives = 63/138 (45%), Gaps = 14/138 (10%)
Query: 428 AAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLG 487
           AA  G  + VR+L+  GA     +  G T +HLAA  GH +++E +    A        G
Sbjct: 21  AARAGQDDEVRILMANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADVNARDTDG 80
Query: 488 VTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNEN 547
            T LH+AA  G  + V  LL +       D               G+TPLHLAA  G+  
Sbjct: 81  WTPLHLAADNGHLEIVEVLLKYGADVNAQDA-------------YGLTPLHLAADRGHLE 127
Query: 548 VVRLLLNSAGVQVDAQTQ 565
           +V +LL   G  V+AQ +
Sbjct: 128 IVEVLLKH-GADVNAQDK 144

>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 91.7 bits (226), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 55/152 (36%), Positives = 87/152 (57%), Gaps = 4/152 (2%)
Query: 325 AAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKD 384
           AA AGQ    ++L+  GA ++A D  G  P+H+AA+    E+ ++ L+A    V A  KD
Sbjct: 9   AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD-VNAKDKD 67
Query: 385 GNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAG 444
           G T  H+AA +G + ++E L+K      ++A+++    TPL LAA  GH  +V VL+KAG
Sbjct: 68  GYTPLHLAAREGHLEIVEVLLKA--GADVNAKDK-DGYTPLHLAAREGHLEIVEVLLKAG 124
Query: 445 ASCTDENKTGFTAVHLAAQNGHNQVLEEMRSS 476
           A    ++K G T   LA + GH  + E ++ +
Sbjct: 125 ADVNAQDKFGKTPFDLAIREGHEDIAEVLQKA 156

>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 72.0 bits (175), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 48/134 (35%), Positives = 69/134 (51%), Gaps = 13/134 (9%)
Query: 423 TPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVY 482
           TPL LAA  GH  +V VL+KAGA    ++K G+T +HLAA+ GH +++E +  + A    
Sbjct: 37  TPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNA 96
Query: 483 SKKLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAY 542
             K G T LH+AA  G  + V  LL             GA    +   + G TP  LA  
Sbjct: 97  KDKDGYTPLHLAAREGHLEIVEVLLK-----------AGADVNAQ--DKFGKTPFDLAIR 143
Query: 543 SGNENVVRLLLNSA 556
            G+E++  +L  +A
Sbjct: 144 EGHEDIAEVLQKAA 157

>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 90.5 bits (223), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 55/152 (36%), Positives = 87/152 (57%), Gaps = 4/152 (2%)
Query: 325 AAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKD 384
           AA AGQ    ++L+  GA ++A D  G  P+H+AA+    E+ ++ L+A    V A  KD
Sbjct: 9   AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD-VNAKDKD 67
Query: 385 GNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAG 444
           G T  H+AA +G + ++E L+K      ++A+++    TPL LAA  GH  +V VL+KAG
Sbjct: 68  GYTPLHLAAREGHLEIVEVLLK--AGADVNAKDK-DGYTPLHLAAREGHLEIVEVLLKAG 124
Query: 445 ASCTDENKTGFTAVHLAAQNGHNQVLEEMRSS 476
           A    ++K G T   LA  NG+  + E ++ +
Sbjct: 125 ADVNAQDKFGKTPFDLAIDNGNEDIAEVLQKA 156

>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 73.6 bits (179), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 49/134 (36%), Positives = 70/134 (52%), Gaps = 13/134 (9%)
Query: 423 TPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVY 482
           TPL LAA  GH  +V VL+KAGA    ++K G+T +HLAA+ GH +++E +  + A    
Sbjct: 37  TPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNA 96
Query: 483 SKKLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAY 542
             K G T LH+AA  G  + V  LL             GA    +   + G TP  LA  
Sbjct: 97  KDKDGYTPLHLAAREGHLEIVEVLLK-----------AGADVNAQ--DKFGKTPFDLAID 143
Query: 543 SGNENVVRLLLNSA 556
           +GNE++  +L  +A
Sbjct: 144 NGNEDIAEVLQKAA 157

>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin Length = 166

Iteration: 1
 Score = 89.4 bits (220), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 54/147 (36%), Positives = 85/147 (57%), Gaps = 4/147 (2%)
Query: 325 AAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKD 384
           AA AGQ    ++L+  GA ++A D  G  P+H+AA+    E+ ++ L+A    V A  KD
Sbjct: 21  AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD-VNAKDKD 79
Query: 385 GNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAG 444
           G T  H+AA +G + ++E L+K      ++A+++    TPL LAA  GH  +V VL+KAG
Sbjct: 80  GYTPLHLAAREGHLEIVEVLLK--AGADVNAKDK-DGYTPLHLAAREGHLEIVEVLLKAG 136
Query: 445 ASCTDENKTGFTAVHLAAQNGHNQVLE 471
           A    ++K G TA  ++  NG+  + E
Sbjct: 137 ADVNAQDKFGKTAFDISIDNGNEDLAE 163

>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin Length = 166

Iteration: 1
 Score = 67.0 bits (162), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 49/138 (35%), Positives = 71/138 (51%), Gaps = 14/138 (10%)
Query: 428 AAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLG 487
           AA  G  + VR+L+  GA    ++K G+T +HLAA+ GH +++E +  + A      K G
Sbjct: 21  AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDG 80
Query: 488 VTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNEN 547
            T LH+AA  G  + V  LL             GA    +   + G TPLHLAA  G+  
Sbjct: 81  YTPLHLAAREGHLEIVEVLLK-----------AGADVNAK--DKDGYTPLHLAAREGHLE 127
Query: 548 VVRLLLNSAGVQVDAQTQ 565
           +V +LL  AG  V+AQ +
Sbjct: 128 IVEVLL-KAGADVNAQDK 144

>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Length = 237

Iteration: 1
 Score = 86.3 bits (212), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 71/246 (28%), Positives = 118/246 (47%), Gaps = 26/246 (10%)
Query: 318 KQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSL 377
           K++PLH AAEAG + +C +L+  GA+ID   +  + P+  AA+NN  E  +  ++A  +L
Sbjct: 11  KRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKA-GAL 69
Query: 378 VTATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVV 437
           V     +G+TC H+AA +G   V++ L+   +  V    +     TP+  A E  H ++V
Sbjct: 70  VDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDD--GGWTPMIWATEYKHVDLV 127
Query: 438 RVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSK----ALNVYSKKLGVTALHV 493
           ++L+  G+     +      +H AA +G   + E + ++K    A+N++    G + LH+
Sbjct: 128 KLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIH----GDSPLHI 183
Query: 494 AAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVRLLL 553
           AA   + D V   LS                   L ++ G TPL  A  S N  V   L 
Sbjct: 184 AARENRYDCVVLFLSRDSDVT-------------LKNKEGETPLQCA--SLNSQVWSALQ 228
Query: 554 NSAGVQ 559
            S  +Q
Sbjct: 229 MSKALQ 234

>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Length = 237

Iteration: 1
 Score = 52.8 bits (125), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 43/147 (29%), Positives = 72/147 (48%), Gaps = 19/147 (12%)
Query: 423 TPLQLAAEGGHANVVRVLVKAGA---SCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKAL 479
           +PL  AAE GH ++  +LV+AGA   +C+++ +T       AA+N H + ++ +  + AL
Sbjct: 13  SPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLME---AAENNHLEAVKYLIKAGAL 69
Query: 480 NVYSKKLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHL 539
                  G T LH+AA  G  + V+ LLS+    V                + G TP+  
Sbjct: 70  VDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQ------------DDGGWTPMIW 117
Query: 540 AAYSGNENVVRLLLNSAGVQVDAQTQE 566
           A    + ++V+LLL S G  ++ +  E
Sbjct: 118 ATEYKHVDLVKLLL-SKGSDINIRDNE 143

>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In Complex With A Selective Darpin Length = 167

Iteration: 1
 Score = 85.5 bits (210), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 53/151 (35%), Positives = 86/151 (56%), Gaps = 4/151 (2%)
Query: 325 AAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKD 384
           AA AGQ    ++L+  GA ++A D+ G  P+H+AA +   E+ ++ L+ H + V A    
Sbjct: 21  AARAGQDDEVRILIANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLK-HGADVDAADVY 79
Query: 385 GNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAG 444
           G T  H+AAM G + ++E L+K+   G       +T +TPL LAA+ GH  +V VL+K G
Sbjct: 80  GFTPLHLAAMTGHLEIVEVLLKY---GADVNAFDMTGSTPLHLAADEGHLEIVEVLLKYG 136
Query: 445 ASCTDENKTGFTAVHLAAQNGHNQVLEEMRS 475
           A    ++K G TA  ++  NG+  + +  R+
Sbjct: 137 ADVNAQDKFGKTAFDISIDNGNEDLAKSCRN 167

>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In Complex With A Selective Darpin Length = 167

Iteration: 1
 Score = 59.7 bits (143), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 46/138 (33%), Positives = 66/138 (47%), Gaps = 14/138 (10%)
Query: 428 AAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLG 487
           AA  G  + VR+L+  GA     + TG T +HLAA +GH +++E +    A    +   G
Sbjct: 21  AARAGQDDEVRILIANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGADVDAADVYG 80
Query: 488 VTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNEN 547
            T LH+AA  G  + V  LL +       D              +G TPLHLAA  G+  
Sbjct: 81  FTPLHLAAMTGHLEIVEVLLKYGADVNAFDM-------------TGSTPLHLAADEGHLE 127
Query: 548 VVRLLLNSAGVQVDAQTQ 565
           +V +LL   G  V+AQ +
Sbjct: 128 IVEVLLKY-GADVNAQDK 144

>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph (3')-Iiia In Complex With The Inhibitor Ar_3a Length = 169

Iteration: 1
 Score = 84.0 bits (206), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 51/147 (34%), Positives = 80/147 (54%), Gaps = 4/147 (2%)
Query: 325 AAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKD 384
           AA AGQ    ++L+  GA ++A D  G  P+H+   N   E+ ++ L+ + + V A+ K 
Sbjct: 21  AARAGQDDEVRILMANGADVNANDWFGITPLHLVVNNGHLEIIEVLLK-YAADVNASDKS 79
Query: 385 GNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAG 444
           G T  H+AA +G + ++E L+K+   G           TPL LAAE GH  +V VL+K G
Sbjct: 80  GWTPLHLAAYRGHLEIVEVLLKY---GADVNAMDYQGYTPLHLAAEDGHLEIVEVLLKYG 136
Query: 445 ASCTDENKTGFTAVHLAAQNGHNQVLE 471
           A    ++K G TA  ++  NG+  + E
Sbjct: 137 ADVNAQDKFGKTAFDISIDNGNEDLAE 163

>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph (3')-Iiia In Complex With The Inhibitor Ar_3a Length = 169

Iteration: 1
 Score = 64.3 bits (155), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 47/138 (34%), Positives = 64/138 (46%), Gaps = 14/138 (10%)
Query: 428 AAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLG 487
           AA  G  + VR+L+  GA     +  G T +HL   NGH +++E +    A    S K G
Sbjct: 21  AARAGQDDEVRILMANGADVNANDWFGITPLHLVVNNGHLEIIEVLLKYAADVNASDKSG 80
Query: 488 VTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNEN 547
            T LH+AAY G  + V  LL +       D               G TPLHLAA  G+  
Sbjct: 81  WTPLHLAAYRGHLEIVEVLLKYGADVNAMDY-------------QGYTPLHLAAEDGHLE 127
Query: 548 VVRLLLNSAGVQVDAQTQ 565
           +V +LL   G  V+AQ +
Sbjct: 128 IVEVLL-KYGADVNAQDK 144

>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 81.6 bits (200), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 50/147 (34%), Positives = 83/147 (56%), Gaps = 4/147 (2%)
Query: 325 AAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKD 384
           AA AGQ    ++L+  GA ++A D  G  P+H+AA+    E+ ++ L+ + + V A    
Sbjct: 21  AARAGQDDEVRILMANGADVNAEDTYGDTPLHLAARVGHLEIVEVLLK-NGADVNALDFS 79
Query: 385 GNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAG 444
           G+T  H+AA +G + ++E L+K+   G     +    +TPL LAA+ GH  +V VL+K G
Sbjct: 80  GSTPLHLAAKRGHLEIVEVLLKY---GADVNADDTIGSTPLHLAADTGHLEIVEVLLKYG 136
Query: 445 ASCTDENKTGFTAVHLAAQNGHNQVLE 471
           A    ++K G TA  ++  NG+  + E
Sbjct: 137 ADVNAQDKFGKTAFDISIDNGNEDLAE 163

>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 47/138 (34%), Positives = 69/138 (50%), Gaps = 14/138 (10%)
Query: 428 AAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLG 487
           AA  G  + VR+L+  GA    E+  G T +HLAA+ GH +++E +  + A        G
Sbjct: 21  AARAGQDDEVRILMANGADVNAEDTYGDTPLHLAARVGHLEIVEVLLKNGADVNALDFSG 80
Query: 488 VTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNEN 547
            T LH+AA  G  + V  LL +    V +D   G+            TPLHLAA +G+  
Sbjct: 81  STPLHLAAKRGHLEIVEVLLKY-GADVNADDTIGS------------TPLHLAADTGHLE 127
Query: 548 VVRLLLNSAGVQVDAQTQ 565
           +V +LL   G  V+AQ +
Sbjct: 128 IVEVLLKY-GADVNAQDK 144

>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex Length = 351

Iteration: 1
 Score = 81.6 bits (200), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 96/363 (26%), Positives = 150/363 (41%), Gaps = 68/363 (18%)
Query: 198 AVAGNNDVLTGMLEQMSGTEISKALNKQTSIGW--TPLLIACNRGHMELVNTMLNNHARV 255
           A +GN + L  +L  ++       +N   S G   TPL +A     + +V  +L + A V
Sbjct: 32  ARSGNEEKLMALLTPLN-------VNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADV 84
Query: 256 DVFDQEGRSALHLAAEHGYLKVSSGKSLKHSVMSFRLPPHNIIPNGFLVHDHAAVIDILT 315
              D+ G   LH A  +G+ +V+                        L+  H A ++ + 
Sbjct: 85  HAKDKGGLVPLHNACSYGHYEVTE-----------------------LLLKHGACVNAMD 121
Query: 316 LRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHP 375
           L + TPLH AA   +++VC LLL  GA     +  G+  + +A      E      + H 
Sbjct: 122 LWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHS 181
Query: 376 SLVTATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHAN 435
            L  A   D      +A ++ ++ +           +I+ +   +  T L  A    H  
Sbjct: 182 LLQAAREAD------LAKVKKTLAL----------EIINFKQPQSHETALHCAVASLHPK 225
Query: 436 ---VVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLGVTALH 492
              V  +L++ GA+  ++NK   T +H+AA+  HN V+E +    A       LG TALH
Sbjct: 226 RKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALH 285
Query: 493 VAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVRLL 552
            AA  G   T R LLS+      SDP         + S  G T    AA  GNE V ++L
Sbjct: 286 RAALAGHLQTCRLLLSY-----GSDP--------SIISLQGFT----AAQMGNEAVQQIL 328
Query: 553 LNS 555
             S
Sbjct: 329 SES 331

>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex Length = 351

Iteration: 1
 Score = 46.2 bits (108), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 69/259 (26%), Positives = 109/259 (42%), Gaps = 39/259 (15%)
Query: 317 RKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPS 376
           +K   L  A    + ++  LL  L  +  A+D +   P+H+AA  N   + Q+ L+ H +
Sbjct: 24  KKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQ-HGA 82
Query: 377 LVTATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANV 436
            V A  K G    H A   G   V E L+K      ++A + + + TPL  AA      V
Sbjct: 83  DVHAKDKGGLVPLHNACSYGHYEVTELLLK--HGACVNAMD-LWQFTPLHEAASKNRVEV 139
Query: 437 VRVLVKAGASCTDENKTGFTAVHLAAQ-----------NGHNQV-------LEEMRSSKA 478
             +L+  GA  T  N  G +AV +A              GH+ +       L +++ + A
Sbjct: 140 CSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLA 199
Query: 479 LNVYSKKLGV---TALH--VAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESG 533
           L + + K      TALH  VA+   +   V ELL      V               ++  
Sbjct: 200 LEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEK------------NKDF 247
Query: 534 MTPLHLAAYSGNENVVRLL 552
           MTPLH+AA   + +V+ +L
Sbjct: 248 MTPLHVAAERAHNDVMEVL 266

>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or266. Length = 169

Iteration: 1
 Score = 81.3 bits (199), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 55/135 (40%), Positives = 71/135 (52%), Gaps = 13/135 (9%)
Query: 423 TPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVY 482
           TPL LAAE GH  VV++L+  GA    ++  G T +HLAA+NGH +V++ + S  A    
Sbjct: 39  TPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADPNA 98
Query: 483 SKKLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAY 542
               G T LH+AA  G  + V+ LLS       +DP T  S         G TPL LA  
Sbjct: 99  KDSDGKTPLHLAAENGHKEVVKLLLSQ-----GADPNTSDS--------DGRTPLDLARE 145
Query: 543 SGNENVVRLLLNSAG 557
            GNE VV+LL    G
Sbjct: 146 HGNEEVVKLLEKQGG 160

>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 80.9 bits (198), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 53/157 (33%), Positives = 85/157 (54%), Gaps = 18/157 (11%)
Query: 325 AAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKD 384
           AA AGQ    ++L+  GA ++ATD+ G  P+H+AA N   E+ ++ L+ + + V A+   
Sbjct: 21  AARAGQDDEVRILMANGADVNATDNDGYTPLHLAASNGHLEIVEVLLK-NGADVNASDLT 79
Query: 385 GNTCAHIAAMQGSVGVIEELMK-------FDRSGVISARNRVTEATPLQLAAEGGHANVV 437
           G T  H+AA  G + ++E L+K       +D  G           TPL LAA+ GH  +V
Sbjct: 80  GITPLHLAAATGHLEIVEVLLKHGADVNAYDNDG----------HTPLHLAAKYGHLEIV 129
Query: 438 RVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMR 474
            VL+K GA    ++K G TA  ++  NG+  + E ++
Sbjct: 130 EVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQ 166

>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 65.9 bits (159), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 48/138 (34%), Positives = 67/138 (48%), Gaps = 14/138 (10%)
Query: 428 AAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLG 487
           AA  G  + VR+L+  GA     +  G+T +HLAA NGH +++E +  + A    S   G
Sbjct: 21  AARAGQDDEVRILMANGADVNATDNDGYTPLHLAASNGHLEIVEVLLKNGADVNASDLTG 80
Query: 488 VTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNEN 547
           +T LH+AA  G  + V  LL H       D               G TPLHLAA  G+  
Sbjct: 81  ITPLHLAAATGHLEIVEVLLKHGADVNAYD-------------NDGHTPLHLAAKYGHLE 127
Query: 548 VVRLLLNSAGVQVDAQTQ 565
           +V +LL   G  V+AQ +
Sbjct: 128 IVEVLLKH-GADVNAQDK 144

>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or267. Length = 169

Iteration: 1
 Score = 80.5 bits (197), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 58/171 (33%), Positives = 85/171 (49%), Gaps = 29/171 (16%)
Query: 45  RVKDGDRCALMLLKSGAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGE 104
           RVKD       LL++GA PN +  DG+TP+H AA+ G+   ++LLL  G DP  K+  G 
Sbjct: 19  RVKD-------LLENGADPNASDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGR 71
Query: 105 TPLHLASRNCKAEVVDLLIQFVQNISQEKVLEYVNSVNEDGASALHYACQVTKAELIPIT 164
           TPLH A+ N   E+V LL+    +          N+ + DG + LHYA +    E+    
Sbjct: 72  TPLHYAAENGHKEIVKLLLSKGAD---------PNAKDSDGRTPLHYAAENGHKEI---- 118
Query: 165 SKEDQKTVKLLLEAGADVSLQTKQNHETAFHYCAVAGNNDVLTGMLEQMSG 215
                  VKLLL  GAD +  +  +  T        GN +++  +LE+  G
Sbjct: 119 -------VKLLLSKGADPN-TSDSDGRTPLDLAREHGNEEIVK-LLEKQGG 160

>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or267. Length = 169

Iteration: 1
 Score = 75.5 bits (184), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 50/135 (37%), Positives = 68/135 (50%), Gaps = 13/135 (9%)
Query: 423 TPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVY 482
           TPL  AAE GH  +V++L+  GA    ++  G T +H AA+NGH ++++ + S  A    
Sbjct: 39  TPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGADPNA 98
Query: 483 SKKLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAY 542
               G T LH AA  G  + V+ LLS       +DP T  S         G TPL LA  
Sbjct: 99  KDSDGRTPLHYAAENGHKEIVKLLLSK-----GADPNTSDS--------DGRTPLDLARE 145
Query: 543 SGNENVVRLLLNSAG 557
            GNE +V+LL    G
Sbjct: 146 HGNEEIVKLLEKQGG 160

>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat Protein (Darpin) Length = 169

Iteration: 1
 Score = 79.7 bits (195), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 51/150 (34%), Positives = 84/150 (56%), Gaps = 4/150 (2%)
Query: 325 AAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKD 384
           AA AGQ    ++L+  GA ++ATD  G  P+H+AA+    E+ ++ L+ + + V A    
Sbjct: 21  AARAGQDDEVRILMANGADVNATDWLGHTPLHLAAKTGHLEIVEVLLK-YGADVNAWDNY 79
Query: 385 GNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAG 444
           G T  H+AA  G + ++E L+K      ++A++     TPL LAA  GH  +V VL+K G
Sbjct: 80  GATPLHLAADNGHLEIVEVLLK--HGADVNAKD-YEGFTPLHLAAYDGHLEIVEVLLKYG 136
Query: 445 ASCTDENKTGFTAVHLAAQNGHNQVLEEMR 474
           A    ++K G TA  ++  NG+  + E ++
Sbjct: 137 ADVNAQDKFGKTAFDISIDNGNEDLAEILQ 166

>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat Protein (Darpin) Length = 169

Iteration: 1
 Score = 63.9 bits (154), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 48/139 (34%), Positives = 67/139 (48%), Gaps = 16/139 (11%)
Query: 428 AAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKA-LNVYSKKL 486
           AA  G  + VR+L+  GA     +  G T +HLAA+ GH +++E +    A +N +    
Sbjct: 21  AARAGQDDEVRILMANGADVNATDWLGHTPLHLAAKTGHLEIVEVLLKYGADVNAWDN-Y 79
Query: 487 GVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNE 546
           G T LH+AA  G  + V  LL H       D               G TPLHLAAY G+ 
Sbjct: 80  GATPLHLAADNGHLEIVEVLLKHGADVNAKDY-------------EGFTPLHLAAYDGHL 126
Query: 547 NVVRLLLNSAGVQVDAQTQ 565
            +V +LL   G  V+AQ +
Sbjct: 127 EIVEVLL-KYGADVNAQDK 144

>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex) Length = 169

Iteration: 1
 Score = 79.0 bits (193), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 52/150 (34%), Positives = 85/150 (56%), Gaps = 4/150 (2%)
Query: 325 AAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKD 384
           AA AGQ    ++L+  GA ++ATD  G  P+H+AA     E+ ++ L+ H + V A    
Sbjct: 21  AARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLK-HGADVNAIDIX 79
Query: 385 GNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAG 444
           G+T  H+AA+ G + ++E L+K      ++A +   + TPL LAA  GH  +V VL+K G
Sbjct: 80  GSTPLHLAALIGHLEIVEVLLK--HGADVNAVDTWGD-TPLHLAAIMGHLEIVEVLLKHG 136
Query: 445 ASCTDENKTGFTAVHLAAQNGHNQVLEEMR 474
           A    ++K G TA  ++  NG+  + E ++
Sbjct: 137 ADVNAQDKFGKTAFDISIDNGNEDLAEILQ 166

>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex) Length = 169

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 46/138 (33%), Positives = 63/138 (45%), Gaps = 14/138 (10%)
Query: 428 AAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLG 487
           AA  G  + VR+L+  GA     + +G T +HLAA  GH +++E +    A        G
Sbjct: 21  AARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIXG 80
Query: 488 VTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNEN 547
            T LH+AA  G  + V  LL H       D               G TPLHLAA  G+  
Sbjct: 81  STPLHLAALIGHLEIVEVLLKHGADVNAVDT-------------WGDTPLHLAAIMGHLE 127
Query: 548 VVRLLLNSAGVQVDAQTQ 565
           +V +LL   G  V+AQ +
Sbjct: 128 IVEVLLKH-GADVNAQDK 144

>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin Length = 169

Iteration: 1
 Score = 78.2 bits (191), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 52/150 (34%), Positives = 85/150 (56%), Gaps = 4/150 (2%)
Query: 325 AAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKD 384
           AA AGQ    ++L+  GA ++ATD  G  P+H+AA     E+ ++ L+ H + V A    
Sbjct: 21  AARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLK-HGADVNAIDIM 79
Query: 385 GNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAG 444
           G+T  H+AA+ G + ++E L+K      ++A +   + TPL LAA  GH  +V VL+K G
Sbjct: 80  GSTPLHLAALIGHLEIVEVLLK--HGADVNAVDTWGD-TPLHLAAIMGHLEIVEVLLKHG 136
Query: 445 ASCTDENKTGFTAVHLAAQNGHNQVLEEMR 474
           A    ++K G TA  ++  NG+  + E ++
Sbjct: 137 ADVNAQDKFGKTAFDISIDNGNEDLAEILQ 166

>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin Length = 169

Iteration: 1
 Score = 59.7 bits (143), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 46/138 (33%), Positives = 64/138 (46%), Gaps = 14/138 (10%)
Query: 428 AAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLG 487
           AA  G  + VR+L+  GA     + +G T +HLAA  GH +++E +    A       +G
Sbjct: 21  AARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIMG 80
Query: 488 VTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNEN 547
            T LH+AA  G  + V  LL H       D               G TPLHLAA  G+  
Sbjct: 81  STPLHLAALIGHLEIVEVLLKHGADVNAVDT-------------WGDTPLHLAAIMGHLE 127
Query: 548 VVRLLLNSAGVQVDAQTQ 565
           +V +LL   G  V+AQ +
Sbjct: 128 IVEVLLKH-GADVNAQDK 144

>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity Complementary Protein-Protein Interface Length = 158

Iteration: 1
 Score = 78.2 bits (191), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 52/157 (33%), Positives = 82/157 (52%), Gaps = 18/157 (11%)
Query: 325 AAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKD 384
           AA AGQ    ++L+  GA ++ATDD G  P+H+AA N   E+ ++ L+ + + V A+   
Sbjct: 13  AAAAGQDDEVRILMANGADVNATDDNGLTPLHLAAANGQLEIVEVLLK-NGADVNASDSA 71
Query: 385 GNTCAHIAAMQGSVGVIEELMK-------FDRSGVISARNRVTEATPLQLAAEGGHANVV 437
           G T  H+AA  G + ++E L+K       +DR+G           TPL LAA  G   +V
Sbjct: 72  GITPLHLAAYDGHLEIVEVLLKHGADVNAYDRAGW----------TPLHLAALSGQLEIV 121
Query: 438 RVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMR 474
            VL+K GA    ++  G TA  ++   G   + E ++
Sbjct: 122 EVLLKHGADVNAQDALGLTAFDISINQGQEDLAEILQ 158

>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity Complementary Protein-Protein Interface Length = 158

Iteration: 1
 Score = 68.9 bits (167), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 49/136 (36%), Positives = 66/136 (48%), Gaps = 14/136 (10%)
Query: 428 AAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLG 487
           AA  G  + VR+L+  GA     +  G T +HLAA NG  +++E +  + A    S   G
Sbjct: 13  AAAAGQDDEVRILMANGADVNATDDNGLTPLHLAAANGQLEIVEVLLKNGADVNASDSAG 72
Query: 488 VTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNEN 547
           +T LH+AAY G  + V  LL H       D              +G TPLHLAA SG   
Sbjct: 73  ITPLHLAAYDGHLEIVEVLLKHGADVNAYD-------------RAGWTPLHLAALSGQLE 119
Query: 548 VVRLLLNSAGVQVDAQ 563
           +V +LL   G  V+AQ
Sbjct: 120 IVEVLLKH-GADVNAQ 134

>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein Length = 154

Iteration: 1
 Score = 76.6 bits (187), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 51/150 (34%), Positives = 84/150 (56%), Gaps = 4/150 (2%)
Query: 325 AAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKD 384
           AA AGQ    ++L+  GA  +A D  G+ P+H+AA     E+ ++ LR + + V A   +
Sbjct: 9   AARAGQDDEVRILMANGADANAYDHYGRTPLHMAAAVGHLEIVEVLLR-NGADVNAVDTN 67
Query: 385 GNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAG 444
           G T  H+AA  G + ++E L+K+     ++A++  T  TPL LAA  GH  +V VL+K G
Sbjct: 68  GTTPLHLAASLGHLEIVEVLLKYGAD--VNAKD-ATGITPLYLAAYWGHLEIVEVLLKHG 124
Query: 445 ASCTDENKTGFTAVHLAAQNGHNQVLEEMR 474
           A    ++K G TA  ++   G+  + E ++
Sbjct: 125 ADVNAQDKFGKTAFDISIDIGNEDLAEILQ 154

>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein Length = 154

Iteration: 1
 Score = 58.5 bits (140), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 45/139 (32%), Positives = 68/139 (48%), Gaps = 16/139 (11%)
Query: 428 AAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEM-RSSKALNVYSKKL 486
           AA  G  + VR+L+  GA     +  G T +H+AA  GH +++E + R+   +N      
Sbjct: 9   AARAGQDDEVRILMANGADANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGADVNAVDTN- 67
Query: 487 GVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNE 546
           G T LH+AA  G  + V  LL +       D              +G+TPL+LAAY G+ 
Sbjct: 68  GTTPLHLAASLGHLEIVEVLLKYGADVNAKDA-------------TGITPLYLAAYWGHL 114
Query: 547 NVVRLLLNSAGVQVDAQTQ 565
            +V +LL   G  V+AQ +
Sbjct: 115 EIVEVLLKH-GADVNAQDK 132

>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or265. Length = 169

Iteration: 1
 Score = 75.5 bits (184), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 56/171 (32%), Positives = 85/171 (49%), Gaps = 29/171 (16%)
Query: 45  RVKDGDRCALMLLKSGAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGE 104
           RVKD       L+++GA  N +  DG+TP+H AAK G+   ++LL+  G D   K+  G 
Sbjct: 19  RVKD-------LIENGADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGR 71
Query: 105 TPLHLASRNCKAEVVDLLIQFVQNISQEKVLEYVNSVNEDGASALHYACQVTKAELIPIT 164
           TPLH A++    E+V LLI    +         VN+ + DG + LHYA +    E+    
Sbjct: 72  TPLHYAAKEGHKEIVKLLISKGAD---------VNAKDSDGRTPLHYAAKEGHKEI---- 118
Query: 165 SKEDQKTVKLLLEAGADVSLQTKQNHETAFHYCAVAGNNDVLTGMLEQMSG 215
                  VKLL+  GADV+  +  +  T        GN +++  +LE+  G
Sbjct: 119 -------VKLLISKGADVN-TSDSDGRTPLDLAREHGNEEIVK-LLEKQGG 160

>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or265. Length = 169

Iteration: 1
 Score = 72.8 bits (177), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 43/147 (29%), Positives = 81/147 (55%), Gaps = 4/147 (2%)
Query: 325 AAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKD 384
           AAE G     K L++ GA ++A+D  G+ P+H AA+    E+ ++ + +  + V A   D
Sbjct: 11  AAENGNKDRVKDLIENGADVNASDSDGRTPLHYAAKEGHKEIVKLLI-SKGADVNAKDSD 69
Query: 385 GNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAG 444
           G T  H AA +G   +++ L+   +   ++A++     TPL  AA+ GH  +V++L+  G
Sbjct: 70  GRTPLHYAAKEGHKEIVKLLIS--KGADVNAKDSDGR-TPLHYAAKEGHKEIVKLLISKG 126
Query: 445 ASCTDENKTGFTAVHLAAQNGHNQVLE 471
           A     +  G T + LA ++G+ ++++
Sbjct: 127 ADVNTSDSDGRTPLDLAREHGNEEIVK 153

>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or265. Length = 169

Iteration: 1
 Score = 68.9 bits (167), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 47/136 (34%), Positives = 68/136 (50%), Gaps = 15/136 (11%)
Query: 423 TPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVY 482
           TPL  AA+ GH  +V++L+  GA    ++  G T +H AA+ GH ++++ +  SK  +V 
Sbjct: 39  TPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVK-LLISKGADVN 97
Query: 483 SKKL-GVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAA 541
           +K   G T LH AA  G  + V+ L+S       SD               G TPL LA 
Sbjct: 98  AKDSDGRTPLHYAAKEGHKEIVKLLISKGADVNTSDS-------------DGRTPLDLAR 144
Query: 542 YSGNENVVRLLLNSAG 557
             GNE +V+LL    G
Sbjct: 145 EHGNEEIVKLLEKQGG 160

>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 75.5 bits (184), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 52/150 (34%), Positives = 82/150 (54%), Gaps = 4/150 (2%)
Query: 325 AAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKD 384
           AA AGQ    ++L+  GA ++A+D  G  P+H+AA     E+ ++ L+ + + V A    
Sbjct: 21  AARAGQDDEVRILMANGADVNASDHVGWTPLHLAAYFGHLEIVEVLLK-NGADVNADDSL 79
Query: 385 GNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAG 444
           G T  H+AA +G + V+E L+K   +G     N     TPL LAA  GH  +V VL+K G
Sbjct: 80  GVTPLHLAADRGHLEVVEVLLK---NGADVNANDHNGFTPLHLAANIGHLEIVEVLLKHG 136
Query: 445 ASCTDENKTGFTAVHLAAQNGHNQVLEEMR 474
           A    ++K G TA  ++  NG+  + E ++
Sbjct: 137 ADVNAQDKFGKTAFDISIDNGNEDLAEILQ 166

>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 62.4 bits (150), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 47/138 (34%), Positives = 68/138 (49%), Gaps = 14/138 (10%)
Query: 428 AAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLG 487
           AA  G  + VR+L+  GA     +  G+T +HLAA  GH +++E +  + A       LG
Sbjct: 21  AARAGQDDEVRILMANGADVNASDHVGWTPLHLAAYFGHLEIVEVLLKNGADVNADDSLG 80
Query: 488 VTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNEN 547
           VT LH+AA  G  + V  LL +      +D              +G TPLHLAA  G+  
Sbjct: 81  VTPLHLAADRGHLEVVEVLLKNGADVNAND-------------HNGFTPLHLAANIGHLE 127
Query: 548 VVRLLLNSAGVQVDAQTQ 565
           +V +LL   G  V+AQ +
Sbjct: 128 IVEVLLKH-GADVNAQDK 144

>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By Darpin Inhibitors Length = 169

Iteration: 1
 Score = 75.5 bits (184), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 46/149 (30%), Positives = 74/149 (49%), Gaps = 23/149 (15%)
Query: 222 LNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVSSGK 281
           +N    +GWTPL +A   GH+E+V  +L N A V+ +D  G + LHLAA  G+L++    
Sbjct: 40  VNAADVVGWTPLHLAAYWGHLEIVEVLLKNGADVNAYDTLGSTPLHLAAHFGHLEIVE-- 97
Query: 282 SLKHSVMSFRLPPHNIIPNGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLG 341
                          ++ NG       A ++       TPLHLAA  G L++ ++LL  G
Sbjct: 98  --------------VLLKNG-------ADVNAKDDNGITPLHLAANRGHLEIVEVLLKYG 136
Query: 342 ASIDATDDQGQKPIHVAAQNNFPEVAQIF 370
           A ++A D  G+    ++  N   ++A+I 
Sbjct: 137 ADVNAQDKFGKTAFDISINNGNEDLAEIL 165

>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By Darpin Inhibitors Length = 169

Iteration: 1
 Score = 72.4 bits (176), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 49/147 (33%), Positives = 81/147 (55%), Gaps = 4/147 (2%)
Query: 325 AAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKD 384
           AA AG+    ++L+  GA ++A D  G  P+H+AA     E+ ++ L+ + + V A    
Sbjct: 21  AARAGRDDEVRILMANGADVNAADVVGWTPLHLAAYWGHLEIVEVLLK-NGADVNAYDTL 79
Query: 385 GNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAG 444
           G+T  H+AA  G + ++E L+K      ++A++     TPL LAA  GH  +V VL+K G
Sbjct: 80  GSTPLHLAAHFGHLEIVEVLLK--NGADVNAKDD-NGITPLHLAANRGHLEIVEVLLKYG 136
Query: 445 ASCTDENKTGFTAVHLAAQNGHNQVLE 471
           A    ++K G TA  ++  NG+  + E
Sbjct: 137 ADVNAQDKFGKTAFDISINNGNEDLAE 163

>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By Darpin Inhibitors Length = 169

Iteration: 1
 Score = 67.8 bits (164), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 49/139 (35%), Positives = 73/139 (52%), Gaps = 16/139 (11%)
Query: 428 AAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKA-LNVYSKKL 486
           AA  G  + VR+L+  GA     +  G+T +HLAA  GH +++E +  + A +N Y   L
Sbjct: 21  AARAGRDDEVRILMANGADVNAADVVGWTPLHLAAYWGHLEIVEVLLKNGADVNAYDT-L 79
Query: 487 GVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNE 546
           G T LH+AA+FG  + V  LL +       D             ++G+TPLHLAA  G+ 
Sbjct: 80  GSTPLHLAAHFGHLEIVEVLLKNGADVNAKD-------------DNGITPLHLAANRGHL 126
Query: 547 NVVRLLLNSAGVQVDAQTQ 565
            +V +LL   G  V+AQ +
Sbjct: 127 EIVEVLL-KYGADVNAQDK 144

>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4 Length = 169

Iteration: 1
 Score = 75.1 bits (183), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 50/147 (34%), Positives = 80/147 (54%), Gaps = 4/147 (2%)
Query: 325 AAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKD 384
           AA AG+    ++L+  GA ++A D  G  P+H+AA N   E+ ++ L+ + + V A    
Sbjct: 21  AARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLK-NGADVNAVDHA 79
Query: 385 GNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAG 444
           G T   +AA+ G + ++E L+K   +G     N +   TPL LAA  GH  +V VL+K G
Sbjct: 80  GMTPLRLAALFGHLEIVEVLLK---NGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNG 136
Query: 445 ASCTDENKTGFTAVHLAAQNGHNQVLE 471
           A    ++K G TA  ++  NG+  + E
Sbjct: 137 ADVNAQDKFGKTAFDISIDNGNEDLAE 163

>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4 Length = 169

Iteration: 1
 Score = 64.7 bits (156), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 47/138 (34%), Positives = 70/138 (50%), Gaps = 14/138 (10%)
Query: 428 AAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLG 487
           AA  G  + VR+L+  GA    E+ +G+T +HLAA NGH +++E +  + A        G
Sbjct: 21  AARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAG 80
Query: 488 VTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNEN 547
           +T L +AA FG  + V  LL +      +D               G TPLHLAA  G+  
Sbjct: 81  MTPLRLAALFGHLEIVEVLLKNGADVNANDM-------------EGHTPLHLAAMFGHLE 127
Query: 548 VVRLLLNSAGVQVDAQTQ 565
           +V +LL + G  V+AQ +
Sbjct: 128 IVEVLLKN-GADVNAQDK 144

>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three Identical Consensus Repeats Length = 93

Iteration: 1
 Score = 75.1 bits (183), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 39/88 (44%), Positives = 57/88 (64%), Gaps = 1/88 (1%)
Query: 319 QTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLV 378
           +TPLHLAA  G L+V KLLL+ GA ++A D  G+ P+H+AA+N   EV ++ L A    V
Sbjct: 3   RTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD-V 61
Query: 379 TATTKDGNTCAHIAAMQGSVGVIEELMK 406
            A  K+G T  H+AA  G + V++ L++
Sbjct: 62  NAKDKNGRTPLHLAARNGHLEVVKLLLE 89

>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three Identical Consensus Repeats Length = 93

Iteration: 1
 Score = 63.2 bits (152), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 37/86 (43%), Positives = 53/86 (61%)
Query: 423 TPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVY 482
           TPL LAA  GH  VV++L++AGA    ++K G T +HLAA+NGH +V++ +  + A    
Sbjct: 4   TPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNA 63
Query: 483 SKKLGVTALHVAAYFGQADTVRELLS 508
             K G T LH+AA  G  + V+ LL 
Sbjct: 64  KDKNGRTPLHLAARNGHLEVVKLLLE 89

>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three Identical Consensus Repeats Length = 93

Iteration: 1
 Score = 48.9 bits (115), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 38/103 (36%), Positives = 55/103 (53%), Gaps = 13/103 (12%)
Query: 453 TGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLGVTALHVAAYFGQADTVRELLSHVPG 512
            G T +HLAA+NGH +V++ +  + A      K G T LH+AA  G  + V+ LL     
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLE---- 56
Query: 513 TVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVRLLLNS 555
                   GA    +   ++G TPLHLAA +G+  VV+LLL +
Sbjct: 57  -------AGADVNAK--DKNGRTPLHLAARNGHLEVVKLLLEA 90

>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or264. Length = 169

Iteration: 1
 Score = 75.1 bits (183), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 49/147 (33%), Positives = 81/147 (55%), Gaps = 4/147 (2%)
Query: 325 AAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKD 384
           AAE G     K L++ GA ++A+D  G+ P+H AA+N   EV ++ + +  + V A   D
Sbjct: 11  AAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLI-SKGADVNAKDSD 69
Query: 385 GNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAG 444
           G T  H AA  G   V++ L+   +   ++A++     TPL  AAE GH  VV++L+  G
Sbjct: 70  GRTPLHHAAENGHKEVVKLLIS--KGADVNAKDSDGR-TPLHHAAENGHKEVVKLLISKG 126
Query: 445 ASCTDENKTGFTAVHLAAQNGHNQVLE 471
           A     +  G T + LA ++G+ +V++
Sbjct: 127 ADVNTSDSDGRTPLDLAREHGNEEVVK 153

>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or264. Length = 169

Iteration: 1
 Score = 72.4 bits (176), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 52/136 (38%), Positives = 69/136 (50%), Gaps = 15/136 (11%)
Query: 423 TPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVY 482
           TPL  AAE GH  VV++L+  GA    ++  G T +H AA+NGH +V++ +  SK  +V 
Sbjct: 39  TPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVK-LLISKGADVN 97
Query: 483 SKKL-GVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAA 541
           +K   G T LH AA  G  + V+ L+S       SD               G TPL LA 
Sbjct: 98  AKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTSDS-------------DGRTPLDLAR 144
Query: 542 YSGNENVVRLLLNSAG 557
             GNE VV+LL    G
Sbjct: 145 EHGNEEVVKLLEKQGG 160

>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 73.9 bits (180), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 50/147 (34%), Positives = 80/147 (54%), Gaps = 4/147 (2%)
Query: 325 AAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKD 384
           AA AGQ    ++L+  GA ++A D  G  P+H+AA     E+ ++ L+ + + V A    
Sbjct: 21  AARAGQDDEVRILMANGADVNARDFTGWTPLHLAAHFGHLEIVEVLLK-NGADVNAKDSL 79
Query: 385 GNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAG 444
           G T  H+AA +G + ++E L+K   +G     +     TPL LAA+ GH  +V VL+K G
Sbjct: 80  GVTPLHLAARRGHLEIVEVLLK---NGADVNASDSHGFTPLHLAAKRGHLEIVEVLLKNG 136
Query: 445 ASCTDENKTGFTAVHLAAQNGHNQVLE 471
           A    ++K G TA  ++  NG+  + E
Sbjct: 137 ADVNAQDKFGKTAFDISIDNGNEDLAE 163

>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 67.4 bits (163), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 49/138 (35%), Positives = 69/138 (50%), Gaps = 14/138 (10%)
Query: 428 AAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLG 487
           AA  G  + VR+L+  GA     + TG+T +HLAA  GH +++E +  + A       LG
Sbjct: 21  AARAGQDDEVRILMANGADVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGADVNAKDSLG 80
Query: 488 VTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNEN 547
           VT LH+AA  G  + V  LL +      SD               G TPLHLAA  G+  
Sbjct: 81  VTPLHLAARRGHLEIVEVLLKNGADVNASDS-------------HGFTPLHLAAKRGHLE 127
Query: 548 VVRLLLNSAGVQVDAQTQ 565
           +V +LL + G  V+AQ +
Sbjct: 128 IVEVLLKN-GADVNAQDK 144

>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Maltose Binding Protein Length = 169

Iteration: 1
 Score = 73.9 bits (180), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 53/176 (30%), Positives = 84/176 (47%), Gaps = 24/176 (13%)
Query: 233 LLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVSSGKSLKHSVMSFRL 292
           LL A   G  + V  ++ N A V+  D  G + LHLAA  G+L++               
Sbjct: 18  LLEAARAGQDDEVRILMANGADVNAADNTGTTPLHLAAYSGHLEIVE------------- 64
Query: 293 PPHNIIPNGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQ 352
                     ++  H A +D   +   TPLHLAA  G L++ ++LL  GA ++A D  G 
Sbjct: 65  ----------VLLKHGADVDASDVFGYTPLHLAAYWGHLEIVEVLLKNGADVNAMDSDGM 114
Query: 353 KPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIEELMKFD 408
            P+H+AA+  + E+ ++ L+ H + V A  K G T   I+   G+  + E L K +
Sbjct: 115 TPLHLAAKWGYLEIVEVLLK-HGADVNAQDKFGKTAFDISIDNGNEDLAEILQKLN 169

>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Maltose Binding Protein Length = 169

Iteration: 1
 Score = 67.8 bits (164), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 49/138 (35%), Positives = 67/138 (48%), Gaps = 14/138 (10%)
Query: 428 AAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLG 487
           AA  G  + VR+L+  GA     + TG T +HLAA +GH +++E +    A    S   G
Sbjct: 21  AARAGQDDEVRILMANGADVNAADNTGTTPLHLAAYSGHLEIVEVLLKHGADVDASDVFG 80
Query: 488 VTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNEN 547
            T LH+AAY+G  + V  LL +       D               GMTPLHLAA  G   
Sbjct: 81  YTPLHLAAYWGHLEIVEVLLKNGADVNAMDS-------------DGMTPLHLAAKWGYLE 127
Query: 548 VVRLLLNSAGVQVDAQTQ 565
           +V +LL   G  V+AQ +
Sbjct: 128 IVEVLLKH-GADVNAQDK 144

>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin Length = 227

Iteration: 1
 Score = 71.2 bits (173), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 70/247 (28%), Positives = 114/247 (46%), Gaps = 38/247 (15%)
Query: 234 LIACNRGHM----ELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVSSGKSLKHSVMS 289
           L+ CN  +     EL  ++L + +     DQ+ R+ALH A   G+ ++         ++ 
Sbjct: 9   LMVCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVE------FLLQ 62
Query: 290 FRLPPHNIIPNGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDD 349
             +P ++    G+                 +PLH+AA AG+ ++ K LL  GA ++A + 
Sbjct: 63  LGVPVNDKDDAGW-----------------SPLHIAASAGRDEIVKALLGKGAQVNAVNQ 105
Query: 350 QGQKPIHVAAQNNFPEVAQIFLR--AHPSLVTATTKDGNTCAHIAAMQGSVGVIEELMKF 407
            G  P+H AA  N  E+A + L   A+P    A      T  H AA +G++ +I  L+ +
Sbjct: 106 NGCTPLHYAASKNRHEIAVMLLEGGANPD---AKDHYEATAMHRAAAKGNLKMIHILLYY 162
Query: 408 DRSGVISARNRVTEA-TPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGH 466
             S  I    + TE  TPL LA +       ++LV  GAS   ENK   T + + A+ G 
Sbjct: 163 KASTNI----QDTEGNTPLHLACDEERVEEAKLLVSQGASIYIENKEEKTPLQV-AKGGL 217
Query: 467 NQVLEEM 473
             +L+ M
Sbjct: 218 GLILKRM 224

>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin Length = 227

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/161 (24%), Positives = 68/161 (42%), Gaps = 15/161 (9%)
Query: 393 AMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENK 452
           A  G +  ++E +  D+S  ++ R      T L  A   GH  +V  L++ G    D++ 
Sbjct: 15  AYSGKLEELKESILADKS--LATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDD 72
Query: 453 TGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLGVTALHVAAYFGQADTVRELLSHVPG 512
            G++ +H+AA  G +++++ +    A      + G T LH AA   + +    LL    G
Sbjct: 73  AGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLE---G 129
Query: 513 TVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVRLLL 553
               D                 T +H AA  GN  ++ +LL
Sbjct: 130 GANPDAK----------DHYEATAMHRAAAKGNLKMIHILL 160

>pdb|1UOH|A Chain A, Human Gankyrin Length = 226

Iteration: 1
 Score = 70.9 bits (172), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 70/247 (28%), Positives = 114/247 (46%), Gaps = 38/247 (15%)
Query: 234 LIACNRGHM----ELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVSSGKSLKHSVMS 289
           L+ CN  +     EL  ++L + +     DQ+ R+ALH A   G+ ++         ++ 
Sbjct: 8   LMVCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVE------FLLQ 61
Query: 290 FRLPPHNIIPNGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDD 349
             +P ++    G+                 +PLH+AA AG+ ++ K LL  GA ++A + 
Sbjct: 62  LGVPVNDKDDAGW-----------------SPLHIAASAGRDEIVKALLGKGAQVNAVNQ 104
Query: 350 QGQKPIHVAAQNNFPEVAQIFLR--AHPSLVTATTKDGNTCAHIAAMQGSVGVIEELMKF 407
            G  P+H AA  N  E+A + L   A+P    A      T  H AA +G++ +I  L+ +
Sbjct: 105 NGCTPLHYAASKNRHEIAVMLLEGGANPD---AKDHYEATAMHRAAAKGNLKMIHILLYY 161
Query: 408 DRSGVISARNRVTEA-TPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGH 466
             S  I    + TE  TPL LA +       ++LV  GAS   ENK   T + + A+ G 
Sbjct: 162 KASTNI----QDTEGNTPLHLACDEERVEEAKLLVSQGASIYIENKEEKTPLQV-AKGGL 216
Query: 467 NQVLEEM 473
             +L+ M
Sbjct: 217 GLILKRM 223

>pdb|1UOH|A Chain A, Human Gankyrin Length = 226

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/161 (24%), Positives = 68/161 (42%), Gaps = 15/161 (9%)
Query: 393 AMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENK 452
           A  G +  ++E +  D+S  ++ R      T L  A   GH  +V  L++ G    D++ 
Sbjct: 14  AYSGKLEELKESILADKS--LATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDD 71
Query: 453 TGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLGVTALHVAAYFGQADTVRELLSHVPG 512
            G++ +H+AA  G +++++ +    A      + G T LH AA   + +    LL    G
Sbjct: 72  AGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLE---G 128
Query: 513 TVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVRLLL 553
               D                 T +H AA  GN  ++ +LL
Sbjct: 129 GANPDAK----------DHYEATAMHRAAAKGNLKMIHILL 159

>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex Length = 169

Iteration: 1
 Score = 68.6 bits (166), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 54/163 (33%), Positives = 84/163 (51%), Gaps = 22/163 (13%)
Query: 43  AARVKDGDRCALMLLKSGAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKI 102
           AAR    D   + L+ +GA  N   D G+TP+H AA  G+L  +++LL+ G D    +K+
Sbjct: 21  AARAGQDDEVRI-LMANGADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGADVNAADKM 79
Query: 103 GETPLHLASRNCKAEVVDLLIQFVQNISQEKVLEYVNSVNEDGASALHYACQVTKAELIP 162
           G+TPLHLA+     E+V++L++   +         VN+ +  G + LH A      E+  
Sbjct: 80  GDTPLHLAALYGHLEIVEVLLKNGAD---------VNATDTYGFTPLHLAADAGHLEI-- 128
Query: 163 ITSKEDQKTVKLLLEAGADVSLQTKQNHETAFHYCAVAGNNDV 205
                    V++LL+ GADV+ Q K   +TAF      GN D+
Sbjct: 129 ---------VEVLLKYGADVNAQDKFG-KTAFDISIDNGNEDL 161

>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex Length = 169

Iteration: 1
 Score = 67.0 bits (162), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 52/176 (29%), Positives = 83/176 (47%), Gaps = 24/176 (13%)
Query: 233 LLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVSSGKSLKHSVMSFRL 292
           LL A   G  + V  ++ N A V+  D  G++ LHLAA  G+L++               
Sbjct: 18  LLEAARAGQDDEVRILMANGADVNAEDDSGKTPLHLAAIKGHLEIVE------------- 64
Query: 293 PPHNIIPNGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQ 352
                     ++  H A ++       TPLHLAA  G L++ ++LL  GA ++ATD  G 
Sbjct: 65  ----------VLLKHGADVNAADKMGDTPLHLAALYGHLEIVEVLLKNGADVNATDTYGF 114
Query: 353 KPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIEELMKFD 408
            P+H+AA     E+ ++ L+ + + V A  K G T   I+   G+  + E L K +
Sbjct: 115 TPLHLAADAGHLEIVEVLLK-YGADVNAQDKFGKTAFDISIDNGNEDLAEILQKLN 169

>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex Length = 169

Iteration: 1
 Score = 65.5 bits (158), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 47/138 (34%), Positives = 70/138 (50%), Gaps = 14/138 (10%)
Query: 428 AAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLG 487
           AA  G  + VR+L+  GA    E+ +G T +HLAA  GH +++E +    A    + K+G
Sbjct: 21  AARAGQDDEVRILMANGADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGADVNAADKMG 80
Query: 488 VTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNEN 547
            T LH+AA +G  + V  LL +      +D               G TPLHLAA +G+  
Sbjct: 81  DTPLHLAALYGHLEIVEVLLKNGADVNATDT-------------YGFTPLHLAADAGHLE 127
Query: 548 VVRLLLNSAGVQVDAQTQ 565
           +V +LL   G  V+AQ +
Sbjct: 128 IVEVLLKY-GADVNAQDK 144

>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA Length = 153

Iteration: 1
 Score = 65.5 bits (158), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 50/164 (30%), Positives = 83/164 (50%), Gaps = 25/164 (15%)
Query: 43  AARVKDGDRCALMLLKSGAGPNLTTDD-GQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNK 101
           AAR    D   +++     G   TTD  G +P+H AA+YG+  T ++LL  G     + K
Sbjct: 9   AARAGQDDEVRILM---ANGAPFTTDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTK 65
Query: 102 IGETPLHLASRNCKAEVVDLLIQFVQNISQEKVLEYVNSVNEDGASALHYACQVTKAELI 161
           +  TPLH+A+    A +V++L++   +++ + +L+          +ALH+A         
Sbjct: 66  VDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKM---------TALHWA--------- 107
Query: 162 PITSKEDQKTVKLLLEAGADVSLQTKQNHETAFHYCAVAGNNDV 205
             T    Q+ V+LL++ GADV  Q+K   +TAF      GN D+
Sbjct: 108 --TEHNHQEVVELLIKYGADVHTQSKFC-KTAFDISIDNGNEDL 148

>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA Length = 153

Iteration: 1
 Score = 62.8 bits (151), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 49/147 (33%), Positives = 75/147 (51%), Gaps = 5/147 (3%)
Query: 325 AAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKD 384
           AA AGQ    ++L+  GA    TD  G  P+H+AAQ       ++ LRA  S   A TK 
Sbjct: 9   AARAGQDDEVRILMANGAPF-TTDWLGTSPLHLAAQYGHFSTTEVLLRAGVSR-DARTKV 66
Query: 385 GNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAG 444
             T  H+AA +G   ++E L+K      ++A++ + + T L  A E  H  VV +L+K G
Sbjct: 67  DRTPLHMAASEGHANIVEVLLK--HGADVNAKDML-KMTALHWATEHNHQEVVELLIKYG 123
Query: 445 ASCTDENKTGFTAVHLAAQNGHNQVLE 471
           A    ++K   TA  ++  NG+  + E
Sbjct: 124 ADVHTQSKFCKTAFDISIDNGNEDLAE 150

>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA Length = 153

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 37/130 (28%), Positives = 59/130 (45%), Gaps = 13/130 (10%)
Query: 423 TPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVY 482
           +PL LAA+ GH +   VL++AG S     K   T +H+AA  GH  ++E +    A    
Sbjct: 36  SPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNA 95
Query: 483 SKKLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAY 542
              L +TALH A      + V  L+ +      +D  T + F          T   ++  
Sbjct: 96  KDMLKMTALHWATEHNHQEVVELLIKY-----GADVHTQSKFC--------KTAFDISID 142
Query: 543 SGNENVVRLL 552
           +GNE++  +L
Sbjct: 143 NGNEDLAEIL 152

>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6 Atpase Of The 26s Proteasome Length = 231

Iteration: 1
 Score = 65.5 bits (158), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 65/235 (27%), Positives = 106/235 (45%), Gaps = 37/235 (15%)
Query: 234 LIACNRGHM----ELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVSSGKSLKHSVMS 289
           ++ CN  +     EL   +L + +     DQ+ R+ALH A   G+ ++         ++ 
Sbjct: 8   IMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVE------FLLQ 61
Query: 290 FRLPPHNIIPNGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDD 349
             +P ++    G+                 +PLH+AA AG+ ++ K LL  GA ++A + 
Sbjct: 62  LGVPVNDKDDAGW-----------------SPLHIAASAGRDEIVKALLVKGAHVNAVNQ 104
Query: 350 QGQKPIHVAAQNNFPEVAQIFLR--AHPSLVTATTKDGNTCAHIAAMQGSVGVIEELMKF 407
            G  P+H AA  N  E+A + L   A+P    A      T  H AA +G++ ++  L+ +
Sbjct: 105 NGCTPLHYAASKNRHEIAVMLLEGGANPD---AKDHYDATAMHRAAAKGNLKMVHILLFY 161
Query: 408 DRSGVISARNRVTEA-TPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLA 461
             S  I    + TE  TPL LA +       + LV  GAS   ENK   T + +A
Sbjct: 162 KASTNI----QDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVA 212

>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6 Atpase Of The 26s Proteasome Length = 231

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 40/161 (24%), Positives = 68/161 (42%), Gaps = 15/161 (9%)
Query: 393 AMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENK 452
           A  G +  ++E +  D+S  ++ R      T L  A   GH  +V  L++ G    D++ 
Sbjct: 14  AYSGKLDELKERILADKS--LATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDD 71
Query: 453 TGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLGVTALHVAAYFGQADTVRELLSHVPG 512
            G++ +H+AA  G +++++ +    A      + G T LH AA   + +    LL    G
Sbjct: 72  AGWSPLHIAASAGRDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLE---G 128
Query: 513 TVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVRLLL 553
               D                 T +H AA  GN  +V +LL
Sbjct: 129 GANPDAK----------DHYDATAMHRAAAKGNLKMVHILL 159

>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked Site-Specifically, And Incoporated By Genetic Code Expansion Length = 231

Iteration: 1
 Score = 64.7 bits (156), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 60/224 (26%), Positives = 98/224 (43%), Gaps = 34/224 (15%)
Query: 180 ADVSLQTK--QNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIAC 237
           AD SL T+  Q+  TA H+   AG+ +++  +L      ++   +N +   GW+PL IA 
Sbjct: 28  ADKSLATRTDQDSRTALHWACSAGHTEIVEFLL------QLGVPVNDKDDAGWSPLHIAA 81
Query: 238 NRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVSSGKSLKHSVMSFRLPPHNI 297
           + G  E+V  +L   A V+  +Q G + LH AA             +H +    L     
Sbjct: 82  SAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKN----------RHEIAVMLL----- 126
Query: 298 IPNGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHV 357
                   +  A  D       T +H AA  G L++  +LL   AS +  D +G  P+H+
Sbjct: 127 --------EGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHL 178
Query: 358 AAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVI 401
           A      E A+ FL    + +    K+  T   +A  +G +G+I
Sbjct: 179 ACDEERVEEAK-FLVTQGASIYIENKEEKTPLQVA--KGGLGLI 219

>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked Site-Specifically, And Incoporated By Genetic Code Expansion Length = 231

Iteration: 1
 Score = 64.3 bits (155), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 65/235 (27%), Positives = 105/235 (44%), Gaps = 37/235 (15%)
Query: 234 LIACNRGHM----ELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVSSGKSLKHSVMS 289
           ++ CN  +     EL   +L + +     DQ+ R+ALH A   G+ ++         ++ 
Sbjct: 8   IMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVE------FLLQ 61
Query: 290 FRLPPHNIIPNGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDD 349
             +P ++    G+                 +PLH+AA AG  ++ K LL  GA ++A + 
Sbjct: 62  LGVPVNDKDDAGW-----------------SPLHIAASAGXDEIVKALLVKGAHVNAVNQ 104
Query: 350 QGQKPIHVAAQNNFPEVAQIFLR--AHPSLVTATTKDGNTCAHIAAMQGSVGVIEELMKF 407
            G  P+H AA  N  E+A + L   A+P    A      T  H AA +G++ ++  L+ +
Sbjct: 105 NGCTPLHYAASKNRHEIAVMLLEGGANPD---AKDHYDATAMHRAAAKGNLKMVHILLFY 161
Query: 408 DRSGVISARNRVTEA-TPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLA 461
             S  I    + TE  TPL LA +       + LV  GAS   ENK   T + +A
Sbjct: 162 KASTNI----QDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVA 212

>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked Site-Specifically, And Incoporated By Genetic Code Expansion Length = 231

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 40/161 (24%), Positives = 68/161 (42%), Gaps = 15/161 (9%)
Query: 393 AMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENK 452
           A  G +  ++E +  D+S  ++ R      T L  A   GH  +V  L++ G    D++ 
Sbjct: 14  AYSGKLDELKERILADKS--LATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDD 71
Query: 453 TGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLGVTALHVAAYFGQADTVRELLSHVPG 512
            G++ +H+AA  G +++++ +    A      + G T LH AA   + +    LL    G
Sbjct: 72  AGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLE---G 128
Query: 513 TVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVRLLL 553
               D                 T +H AA  GN  +V +LL
Sbjct: 129 GANPDAK----------DHYDATAMHRAAAKGNLKMVHILL 159

>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex Length = 213

Iteration: 1
 Score = 63.5 bits (153), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 40/148 (27%), Positives = 74/148 (50%), Gaps = 7/148 (4%)
Query: 318 KQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHP-- 375
           +QTPLHLA    Q ++ + LL  G   +  D +G  P+H+A +        +  ++    
Sbjct: 42  QQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTP 101
Query: 376 ---SLVTATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGG 432
              S++ AT  +G+TC H+A++ G +G++E L+       ++A+      T L LA +  
Sbjct: 102 HLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGAD--VNAQEPCNGRTALHLAVDLQ 159
Query: 433 HANVVRVLVKAGASCTDENKTGFTAVHL 460
           + ++V +L+K GA        G++   L
Sbjct: 160 NPDLVSLLLKCGADVNRVTYQGYSPYQL 187

>pdb|1WDY|A Chain A, Crystal Structure Of Ribonuclease Length = 285

Iteration: 1
 Score = 63.5 bits (153), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 80/299 (26%), Positives = 130/299 (43%), Gaps = 33/299 (11%)
Query: 160 LIPITSKEDQKTVKLLLEAGADVSLQTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEIS 219
           LI     ED   V+ LLE GA+V+ Q ++   T  H        D++  +L   +   + 
Sbjct: 9   LIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLR 68
Query: 220 KALNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVSS 279
           K        G TP L+A   G ++L+   L+  A V+  D  G +A   AA +G +K   
Sbjct: 69  K------KNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALK 122
Query: 280 GKSLKHSVMSFRLPPHNIIPNGFLVHDHAAVIDILTLRK--QTPLHLAAEAGQLQVCKLL 337
               + + ++ R                    D   LRK   T L  AAE G ++V K+L
Sbjct: 123 FLYKRGANVNLRRKTKE---------------DQERLRKGGATALMDAAEKGHVEVLKIL 167
Query: 338 LD-LGASIDATDDQGQKP-IHVAAQNNFPEVAQI--FLRAHPSLVTATTKDGNTCAHIAA 393
           LD +GA ++A D+ G+   IH    ++  +V  I   L  H + V    + G T   +A 
Sbjct: 168 LDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAV 227
Query: 394 MQGSVGVIEELMKFDRSGVISARNRVTEA-TPLQLAAEGGHANVVRVLVKAGAS--CTD 449
            +  +G+++ L++ +    I   +  ++  T L LA E     +  +L K GAS  C D
Sbjct: 228 EKKHLGLVQRLLEQEH---IEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCGD 283

>pdb|1WDY|A Chain A, Crystal Structure Of Ribonuclease Length = 285

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 45/178 (25%), Positives = 74/178 (41%), Gaps = 13/178 (7%)
Query: 358 AAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARN 417
           A QN   ++ Q  L    ++     + G T  H A       ++E L++     V+  +N
Sbjct: 12  AVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKN 71
Query: 418 RVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEM---- 473
               ATP  LAA  G   ++++ +  GA   + +  GFTA   AA  G  + L+ +    
Sbjct: 72  G---ATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRG 128
Query: 474 ------RSSKALNVYSKKLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFL 525
                 R +K      +K G TAL  AA  G  + ++ LL  +   V +    G + L
Sbjct: 129 ANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNAL 186

>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With The Proteasome Subunit, Rpt3 Length = 228

Iteration: 1
 Score = 63.2 bits (152), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 49/187 (26%), Positives = 84/187 (44%), Gaps = 29/187 (15%)
Query: 172 VKLLLEAGADVSLQTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWT 231
           V+ LL +   + LQ  Q+     H+      +++ + +L +M    +    +     GWT
Sbjct: 18  VQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLD---DYPDDSGWT 74
Query: 232 PLLIACNRGHMELVNTMLNNHARVDV--FDQEGRSALHLAAEHGYLKVSSGKSLKHSVMS 289
           P  IAC+ G++E+V ++ +   + D+     +G + LHLA    + +VS           
Sbjct: 75  PFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQ---------- 124
Query: 290 FRLPPHNIIPNGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGAS-IDATD 348
                       FL+ + A+V  I     Q PLH AA  G L++ +LL  LG S ++  D
Sbjct: 125 ------------FLIENGASV-RIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQD 171
Query: 349 DQGQKPI 355
            QG  P+
Sbjct: 172 KQGWTPL 178

>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein Gankyrin, An Interactor Of Rb And Cdk46 Length = 231

Iteration: 1
 Score = 63.2 bits (152), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 49/187 (26%), Positives = 84/187 (44%), Gaps = 29/187 (15%)
Query: 172 VKLLLEAGADVSLQTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWT 231
           V+ LL +   + LQ  Q+     H+      +++ + +L +M    +    +     GWT
Sbjct: 18  VQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLD---DYPDDSGWT 74
Query: 232 PLLIACNRGHMELVNTMLNNHARVDV--FDQEGRSALHLAAEHGYLKVSSGKSLKHSVMS 289
           P  IAC+ G++E+V ++ +   + D+     +G + LHLA    + +VS           
Sbjct: 75  PFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQ---------- 124
Query: 290 FRLPPHNIIPNGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGAS-IDATD 348
                       FL+ + A+V  I     Q PLH AA  G L++ +LL  LG S ++  D
Sbjct: 125 ------------FLIENGASV-RIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQD 171
Query: 349 DQGQKPI 355
            QG  P+
Sbjct: 172 KQGWTPL 178

>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two Different Crystal Forms Length = 243

Iteration: 1
 Score = 63.2 bits (152), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 49/187 (26%), Positives = 84/187 (44%), Gaps = 29/187 (15%)
Query: 172 VKLLLEAGADVSLQTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWT 231
           V+ LL +   + LQ  Q+     H+      +++ + +L +M    +    +     GWT
Sbjct: 18  VQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLD---DYPDDSGWT 74
Query: 232 PLLIACNRGHMELVNTMLNNHARVDV--FDQEGRSALHLAAEHGYLKVSSGKSLKHSVMS 289
           P  IAC+ G++E+V ++ +   + D+     +G + LHLA    + +VS           
Sbjct: 75  PFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQ---------- 124
Query: 290 FRLPPHNIIPNGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGAS-IDATD 348
                       FL+ + A+V  I     Q PLH AA  G L++ +LL  LG S ++  D
Sbjct: 125 ------------FLIENGASV-RIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQD 171
Query: 349 DQGQKPI 355
            QG  P+
Sbjct: 172 KQGWTPL 178

>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex Length = 236

Iteration: 1
 Score = 62.8 bits (151), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 40/148 (27%), Positives = 74/148 (50%), Gaps = 7/148 (4%)
Query: 318 KQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHP-- 375
           +QTPLHLA    Q ++ + LL  G   +  D +G  P+H+A +        +  ++    
Sbjct: 45  QQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTP 104
Query: 376 ---SLVTATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGG 432
              S++ AT  +G+TC H+A++ G +G++E L+       ++A+      T L LA +  
Sbjct: 105 HLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGAD--VNAQEPCNGRTALHLAVDLQ 162
Query: 433 HANVVRVLVKAGASCTDENKTGFTAVHL 460
           + ++V +L+K GA        G++   L
Sbjct: 163 NPDLVSLLLKCGADVNRVTYQGYSPYQL 190

>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure Length = 115

Iteration: 1
 Score = 62.4 bits (150), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 37/108 (34%), Positives = 65/108 (60%), Gaps = 4/108 (3%)
Query: 382 TKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLV 441
           +KDGNT  H AA  G    +++L+   +   ++AR++    TPL LAA+ GHA +V++L+
Sbjct: 6   SKDGNTPLHNAAKNGHAEEVKKLL--SKGADVNARSKDGN-TPLHLAAKNGHAEIVKLLL 62
Query: 442 KAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLGVT 489
             GA     +K G T  HLA +NGH++++ ++  +K  +V ++  G +
Sbjct: 63  AKGADVNARSKDGNTPEHLAKKNGHHEIV-KLLDAKGADVNARSWGSS 109

>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure Length = 115

Iteration: 1
 Score = 49.3 bits (116), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 41/114 (35%), Positives = 63/114 (55%), Gaps = 16/114 (14%)
Query: 452 KTGFTAVHLAAQNGHNQVLEEMRSSKA-LNVYSKKLGVTALHVAAYFGQADTVRELLSHV 510
           K G T +H AA+NGH + ++++ S  A +N  SK  G T LH+AA  G A+ V+ LL+  
Sbjct: 7   KDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKD-GNTPLHLAAKNGHAEIVKLLLA-- 63
Query: 511 PGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVRLLLNSAGVQVDAQT 564
                     GA       S+ G TP HLA  +G+  +V+ LL++ G  V+A++
Sbjct: 64  ---------KGADVNAR--SKDGNTPEHLAKKNGHHEIVK-LLDAKGADVNARS 105

>pdb|4G8K|A Chain A, Intact Sensor Domain Of Human Rnase L In The Inactive Signaling State Length = 337

Iteration: 1
 Score = 62.0 bits (149), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 79/299 (26%), Positives = 130/299 (43%), Gaps = 33/299 (11%)
Query: 160 LIPITSKEDQKTVKLLLEAGADVSLQTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEIS 219
           LI     ED   V+ LLE GA+V+ Q ++   T  H        D++  +L   +   + 
Sbjct: 29  LIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLR 88
Query: 220 KALNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVSS 279
           K        G TP ++A   G ++L+   L+  A V+  D  G +A   AA +G +K   
Sbjct: 89  K------KNGATPFILAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALK 142
Query: 280 GKSLKHSVMSFRLPPHNIIPNGFLVHDHAAVIDILTLRK--QTPLHLAAEAGQLQVCKLL 337
               + + ++ R                    D   LRK   T L  AAE G ++V K+L
Sbjct: 143 FLYKRGANVNLRRKTKE---------------DQERLRKGGATALMDAAEKGHVEVLKIL 187
Query: 338 LD-LGASIDATDDQGQKP-IHVAAQNNFPEVAQI--FLRAHPSLVTATTKDGNTCAHIAA 393
           LD +GA ++A D+ G+   IH    ++  +V  I   L  H + V    + G T   +A 
Sbjct: 188 LDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAV 247
Query: 394 MQGSVGVIEELMKFDRSGVISARNRVTEA-TPLQLAAEGGHANVVRVLVKAGAS--CTD 449
            +  +G+++ L++ +    I   +  ++  T L LA E     +  +L K GAS  C D
Sbjct: 248 EKKHLGLVQRLLEQEH---IEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCGD 303

>pdb|4G8K|A Chain A, Intact Sensor Domain Of Human Rnase L In The Inactive Signaling State Length = 337

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 43/169 (25%), Positives = 71/169 (42%), Gaps = 13/169 (7%)
Query: 358 AAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARN 417
           A QN   ++ Q  L    ++     + G T  H A       ++E L++     V+  +N
Sbjct: 32  AVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKN 91
Query: 418 RVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEM---- 473
               ATP  LAA  G   ++++ +  GA   + +  GFTA   AA  G  + L+ +    
Sbjct: 92  G---ATPFILAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRG 148
Query: 474 ------RSSKALNVYSKKLGVTALHVAAYFGQADTVRELLSHVPGTVKS 516
                 R +K      +K G TAL  AA  G  + ++ LL  +   V +
Sbjct: 149 ANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNA 197

>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting Protein 14 Length = 240

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 57/204 (27%), Positives = 94/204 (46%), Gaps = 30/204 (14%)
Query: 175 LLEAGADVSLQTKQNHETAFHYCAVAGNNDVLT------GMLEQMSGTEISKALNKQTSI 228
           L+EAG DV    K+N  T  H+ A+    D++        +++Q+ G      LN     
Sbjct: 28  LVEAGYDVRQPDKEN-VTLLHWAAINNRIDLVKYYISKGAIVDQLGGD-----LNS---- 77
Query: 229 GWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKV-----SSGKSL 283
             TPL  A  +GH+ +V  ++   A   + D EG S +HLAA+ G+  +     + G+ +
Sbjct: 78  --TPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDV 135
Query: 284 KH-------SVMSFRLPPHNIIPNGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKL 336
                     +M      H++ P   L+  + +V       K T LH A  AG   V  L
Sbjct: 136 DMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISL 195
Query: 337 LLDLGASIDATDDQGQKPIHVAAQ 360
           LL+ GA++DA + +G+  + +A Q
Sbjct: 196 LLEAGANVDAQNIKGESALDLAKQ 219

>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting Protein 14 Length = 240

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 52/182 (28%), Positives = 80/182 (43%), Gaps = 16/182 (8%)
Query: 383 KDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVK 442
           K+  T  H AA+   + +++  +   +  ++        +TPL  A   GH ++V  L+K
Sbjct: 40  KENVTLLHWAAINNRIDLVKYYIS--KGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMK 97
Query: 443 AGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLGVTALHVAAYFGQA-D 501
            GA  +  +  G + +HLAAQ GH  ++  + +         + G+T L  AAY   + D
Sbjct: 98  YGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVD 157
Query: 502 TVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVRLLLNSAGVQVD 561
             R LL     T       G  +          T LH A  +GN  V+ LLL  AG  VD
Sbjct: 158 PTRLLL-----TFNVSVNLGDKYHKN-------TALHWAVLAGNTTVISLLL-EAGANVD 204
Query: 562 AQ 563
           AQ
Sbjct: 205 AQ 206

>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And The Myosin Phosphatase Targeting Subunit 1 (mypt1) Length = 299

Iteration: 1
 Score = 60.5 bits (145), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 55/195 (28%), Positives = 98/195 (50%), Gaps = 18/195 (9%)
Query: 320 TPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVT 379
           T LH A     + + K L++ GA+I+  D++G  P+H AA   + ++A+ +L +  + V 
Sbjct: 75  TALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAE-YLISQGAHVG 133
Query: 380 ATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGV-ISARNRVTEATPLQLAAE---GGHAN 435
           A   +G+T   IA  +    +++   + +R GV I A  +  E   L+ A +    GH N
Sbjct: 134 AVNSEGDTPLDIAEEEAMEELLQN--EVNRQGVDIEAARKEEERIMLRDARQWLNSGHIN 191
Query: 436 VVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLGVTALHVAA 495
            VR             K+G TA+H+AA  G+ +VL+ +  ++         G T LH AA
Sbjct: 192 DVR-----------HAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAA 240
Query: 496 YFGQADTVRELLSHV 510
           ++G+ +  R L+ ++
Sbjct: 241 HWGKEEACRILVENL 255

>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 136

Iteration: 1
 Score = 60.1 bits (144), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 35/118 (29%), Positives = 69/118 (58%), Gaps = 4/118 (3%)
Query: 325 AAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKD 384
           AA AGQ    ++L+  GA ++A D +G  P+H+AA  +  E+ ++ L+ H + V A   D
Sbjct: 21  AARAGQDDEVRILMANGADVNANDRKGNTPLHLAADYDHLEIVEVLLK-HGADVNAHDND 79
Query: 385 GNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVK 442
           G+T  H+AA+ G + ++E L+K      ++A+++  + T   ++ + G+ ++  +L K
Sbjct: 80  GSTPLHLAALFGHLEIVEVLLK--HGADVNAQDKFGK-TAFDISIDNGNEDLAEILQK 134

>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 136

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/126 (29%), Positives = 58/126 (46%), Gaps = 15/126 (11%)
Query: 428 AAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKA-LNVYSKKL 486
           AA  G  + VR+L+  GA     ++ G T +HLAA   H +++E +    A +N +    
Sbjct: 21  AARAGQDDEVRILMANGADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGADVNAHDND- 79
Query: 487 GVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNE 546
           G T LH+AA FG  + V  LL H       D             + G T   ++  +GNE
Sbjct: 80  GSTPLHLAALFGHLEIVEVLLKHGADVNAQD-------------KFGKTAFDISIDNGNE 126
Query: 547 NVVRLL 552
           ++  +L
Sbjct: 127 DLAEIL 132

>pdb|2HE0|A Chain A, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant Length = 253

Iteration: 1
 Score = 59.7 bits (143), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 60/232 (25%), Positives = 103/232 (44%), Gaps = 40/232 (17%)
Query: 139 NSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGADVSLQTKQNHETAFHYCA 198
           N  +  GA+ALH A   ++++             K LLEA AD ++Q      T  H  A
Sbjct: 51  NQTDRTGATALHLAAAYSRSD-----------AAKRLLEASADANIQDNMG-RTPLH-AA 97
Query: 199 VAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVF 258
           V+ +   +  +L +   T++   ++     G TPL++A       ++  ++N+HA V+  
Sbjct: 98  VSADAQGVFQILIRNRATDLDARMHD----GTTPLILAARLAVEGMLEDLINSHADVNAV 153
Query: 259 DQEGRSALHLAAEHGYLKVSSGKSLKHSVMSFRLPPHNIIPNGFLVHDHAAVIDILTLRK 318
           D  G+SALH AA    +  +                  ++ NG       A  D+   R+
Sbjct: 154 DDLGKSALHWAAAVNNVDAAV----------------VLLKNG-------ANKDMQNNRE 190
Query: 319 QTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIF 370
           +TPL LAA  G  +  K+LLD  A+ D TD   + P  +A +    ++ ++ 
Sbjct: 191 ETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLL 242

>pdb|2HE0|A Chain A, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant Length = 253

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 43/86 (50%)
Query: 320 TPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVT 379
           T LHLAA   +    K LL+  A  +  D+ G+ P+H A   +   V QI +R   + + 
Sbjct: 59  TALHLAAAYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLD 118
Query: 380 ATTKDGNTCAHIAAMQGSVGVIEELM 405
           A   DG T   +AA     G++E+L+
Sbjct: 119 ARMHDGTTPLILAARLAVEGMLEDLI 144

>pdb|2F8Y|A Chain A, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a Resolution. Length = 223

Iteration: 1
 Score = 59.3 bits (142), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 59/232 (25%), Positives = 103/232 (44%), Gaps = 40/232 (17%)
Query: 139 NSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGADVSLQTKQNHETAFHYCA 198
           N  +  G +ALH A + ++++             K LLEA AD ++Q      T  H  A
Sbjct: 19  NQTDRTGETALHLAARYSRSD-----------AAKRLLEASADANIQDNMG-RTPLH-AA 65
Query: 199 VAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVF 258
           V+ +   +  +L +   T++   ++     G TPL++A       ++  ++N+HA V+  
Sbjct: 66  VSADAQGVFQILIRNRATDLDARMHD----GTTPLILAARLAVEGMLEDLINSHADVNAV 121
Query: 259 DQEGRSALHLAAEHGYLKVSSGKSLKHSVMSFRLPPHNIIPNGFLVHDHAAVIDILTLRK 318
           D  G+SALH AA    +  +                  ++ NG       A  D+   R+
Sbjct: 122 DDLGKSALHWAAAVNNVDAAVV----------------LLKNG-------ANKDMQNNRE 158
Query: 319 QTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIF 370
           +TPL LAA  G  +  K+LLD  A+ D TD   + P  +A +    ++ ++ 
Sbjct: 159 ETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLL 210

>pdb|2F8Y|A Chain A, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a Resolution. Length = 223

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 28/87 (32%), Positives = 44/87 (50%)
Query: 319 QTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLV 378
           +T LHLAA   +    K LL+  A  +  D+ G+ P+H A   +   V QI +R   + +
Sbjct: 26  ETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDL 85
Query: 379 TATTKDGNTCAHIAAMQGSVGVIEELM 405
            A   DG T   +AA     G++E+L+
Sbjct: 86  DARMHDGTTPLILAARLAVEGMLEDLI 112

>pdb|2F8X|K Chain K, Crystal Structure Of Activated Notch, Csl And Maml On Hes-1 Promoter Dna Sequence Length = 256

Iteration: 1
 Score = 59.3 bits (142), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 59/232 (25%), Positives = 103/232 (44%), Gaps = 40/232 (17%)
Query: 139 NSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGADVSLQTKQNHETAFHYCA 198
           N  +  G +ALH A + ++++             K LLEA AD ++Q      T  H  A
Sbjct: 52  NQTDRTGETALHLAARYSRSD-----------AAKRLLEASADANIQDNMG-RTPLH-AA 98
Query: 199 VAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVF 258
           V+ +   +  +L +   T++   ++     G TPL++A       ++  ++N+HA V+  
Sbjct: 99  VSADAQGVFQILIRNRATDLDARMHD----GTTPLILAARLAVEGMLEDLINSHADVNAV 154
Query: 259 DQEGRSALHLAAEHGYLKVSSGKSLKHSVMSFRLPPHNIIPNGFLVHDHAAVIDILTLRK 318
           D  G+SALH AA    +  +                  ++ NG       A  D+   R+
Sbjct: 155 DDLGKSALHWAAAVNNVDAAV----------------VLLKNG-------ANKDMQNNRE 191
Query: 319 QTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIF 370
           +TPL LAA  G  +  K+LLD  A+ D TD   + P  +A +    ++ ++ 
Sbjct: 192 ETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLL 243

>pdb|2F8X|K Chain K, Crystal Structure Of Activated Notch, Csl And Maml On Hes-1 Promoter Dna Sequence Length = 256

Iteration: 1
 Score = 46.6 bits (109), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 28/87 (32%), Positives = 44/87 (50%)
Query: 319 QTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLV 378
           +T LHLAA   +    K LL+  A  +  D+ G+ P+H A   +   V QI +R   + +
Sbjct: 59  ETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDL 118
Query: 379 TATTKDGNTCAHIAAMQGSVGVIEELM 405
            A   DG T   +AA     G++E+L+
Sbjct: 119 DARMHDGTTPLILAARLAVEGMLEDLI 145

>pdb|1K1B|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A Unique Member Of The Ikappab Protein Family Length = 241

Iteration: 1
 Score = 59.3 bits (142), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 62/193 (32%), Positives = 98/193 (50%), Gaps = 20/193 (10%)
Query: 377 LVTATTKDGNTCAHIAAMQGSVGVIEELMKFDRSG--VISARNRVTEATPLQLAAEGGHA 434
           + T   +DG+T  HIA +QG++  +  L+   + G   +   N + + TPL LA      
Sbjct: 1   MATRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQ-TPLHLAVITTLP 59
Query: 435 NVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKA---LNVYSKKL-GVTA 490
           +VVR+LV AGAS    ++ G TA HLA ++     L  +  S A   L++ ++   G+TA
Sbjct: 60  SVVRLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTA 119
Query: 491 LHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVR 550
           LHVA      +TV+ LL             GA  +  +  +SG +PL  A  + + ++V+
Sbjct: 120 LHVAVNTECQETVQLLLER-----------GAD-IDAVDIKSGRSPLIHAVENNSLSMVQ 167
Query: 551 LLLNSAGVQVDAQ 563
           LLL   G  V+AQ
Sbjct: 168 LLLQH-GANVNAQ 179

>pdb|1YYH|A Chain A, Crystal Structure Of The Human Notch 1 Ankyrin Domain Length = 253

Iteration: 1
 Score = 58.9 bits (141), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 59/232 (25%), Positives = 103/232 (44%), Gaps = 40/232 (17%)
Query: 139 NSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGADVSLQTKQNHETAFHYCA 198
           N  +  G +ALH A + ++++             K LLEA AD ++Q      T  H  A
Sbjct: 51  NQTDRTGETALHLAARYSRSD-----------AAKRLLEASADANIQDNMG-RTPLH-AA 97
Query: 199 VAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVF 258
           V+ +   +  +L +   T++   ++     G TPL++A       ++  ++N+HA V+  
Sbjct: 98  VSADAQGVFQILIRNRATDLDARMHD----GTTPLILAARLAVEGMLEDLINSHADVNAV 153
Query: 259 DQEGRSALHLAAEHGYLKVSSGKSLKHSVMSFRLPPHNIIPNGFLVHDHAAVIDILTLRK 318
           D  G+SALH AA    +  +                  ++ NG       A  D+   R+
Sbjct: 154 DDLGKSALHWAAAVNNVDAAV----------------VLLKNG-------ANKDMQNNRE 190
Query: 319 QTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIF 370
           +TPL LAA  G  +  K+LLD  A+ D TD   + P  +A +    ++ ++ 
Sbjct: 191 ETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLL 242

>pdb|1YYH|A Chain A, Crystal Structure Of The Human Notch 1 Ankyrin Domain Length = 253

Iteration: 1
 Score = 46.6 bits (109), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 28/87 (32%), Positives = 44/87 (50%)
Query: 319 QTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLV 378
           +T LHLAA   +    K LL+  A  +  D+ G+ P+H A   +   V QI +R   + +
Sbjct: 58  ETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDL 117
Query: 379 TATTKDGNTCAHIAAMQGSVGVIEELM 405
            A   DG T   +AA     G++E+L+
Sbjct: 118 DARMHDGTTPLILAARLAVEGMLEDLI 144

>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige Inhibitor Length = 135

Iteration: 1
 Score = 58.5 bits (140), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 33/89 (37%), Positives = 52/89 (58%), Gaps = 1/89 (1%)
Query: 319 QTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLV 378
            TPLHLAA  G L++ ++LL  GA ++AT + G+ P+H+AA  +  E+ ++ L+ H + V
Sbjct: 48  HTPLHLAAMLGHLEIVEVLLKNGADVNATGNTGRTPLHLAAWADHLEIVEVLLK-HGADV 106
Query: 379 TATTKDGNTCAHIAAMQGSVGVIEELMKF 407
            A  K G T   I+   G+  + E L K 
Sbjct: 107 NAQDKFGKTAFDISIDNGNEDLAEILQKL 135

>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige Inhibitor Length = 135

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 42/123 (34%), Positives = 61/123 (49%), Gaps = 5/123 (4%)
Query: 349 DQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIEELMKFD 408
           D G+K +  A      EV    L A+ + V A    G+T  H+AAM G + ++E L+K  
Sbjct: 13  DLGKKLLEAARAGQDDEVR--ILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLK-- 68
Query: 409 RSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQ 468
            +G        T  TPL LAA   H  +V VL+K GA    ++K G TA  ++  NG+  
Sbjct: 69  -NGADVNATGNTGRTPLHLAAWADHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNED 127
Query: 469 VLE 471
           + E
Sbjct: 128 LAE 130

>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige Inhibitor Length = 135

Iteration: 1
 Score = 46.6 bits (109), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 30/79 (37%), Positives = 39/79 (49%)
Query: 423 TPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVY 482
           TPL LAA  GH  +V VL+K GA       TG T +HLAA   H +++E +    A    
Sbjct: 49  TPLHLAAMLGHLEIVEVLLKNGADVNATGNTGRTPLHLAAWADHLEIVEVLLKHGADVNA 108
Query: 483 SKKLGVTALHVAAYFGQAD 501
             K G TA  ++   G  D
Sbjct: 109 QDKFGKTAFDISIDNGNED 127

>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Phosphorylated Map Kinase Erk2 Length = 136

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 33/89 (37%), Positives = 52/89 (58%), Gaps = 1/89 (1%)
Query: 320 TPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVT 379
           TPLHLAA+ G L++ ++LL  GA ++A D+ G  P+H+AA     E+ ++ L+ H + V 
Sbjct: 49  TPLHLAAQLGHLEIVEVLLKYGADVNAEDNFGITPLHLAAIRGHLEIVEVLLK-HGADVN 107
Query: 380 ATTKDGNTCAHIAAMQGSVGVIEELMKFD 408
           A  K G T   I+   G+  + E L K +
Sbjct: 108 AQDKFGKTAFDISIDNGNEDLAEILQKLN 136

>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Phosphorylated Map Kinase Erk2 Length = 136

Iteration: 1
 Score = 56.6 bits (135), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 42/123 (34%), Positives = 64/123 (52%), Gaps = 5/123 (4%)
Query: 349 DQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIEELMKFD 408
           D G+K +  A      EV    L A+ + V A  +DG T  H+AA  G + ++E L+K+ 
Sbjct: 13  DLGKKLLEAARAGQDDEVR--ILMANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYG 70
Query: 409 RSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQ 468
               ++A +     TPL LAA  GH  +V VL+K GA    ++K G TA  ++  NG+  
Sbjct: 71  AD--VNAEDNFG-ITPLHLAAIRGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNED 127
Query: 469 VLE 471
           + E
Sbjct: 128 LAE 130

>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Phosphorylated Map Kinase Erk2 Length = 136

Iteration: 1
 Score = 53.5 bits (127), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 31/79 (39%), Positives = 42/79 (53%)
Query: 423 TPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVY 482
           TPL LAA+ GH  +V VL+K GA    E+  G T +HLAA  GH +++E +    A    
Sbjct: 49  TPLHLAAQLGHLEIVEVLLKYGADVNAEDNFGITPLHLAAIRGHLEIVEVLLKHGADVNA 108
Query: 483 SKKLGVTALHVAAYFGQAD 501
             K G TA  ++   G  D
Sbjct: 109 QDKFGKTAFDISIDNGNED 127

>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r Length = 136

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 38/138 (27%), Positives = 66/138 (47%), Gaps = 23/138 (16%)
Query: 233 LLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVSSGKSLKHSVMSFRL 292
           LL A   G  + V  ++ N A V+  D  G + LHLAA+ G+L++               
Sbjct: 18  LLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVE------------- 64
Query: 293 PPHNIIPNGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQ 352
                     ++  H A ++   +  +TPLHLAA  G L++ ++LL+ GA ++A D  G+
Sbjct: 65  ----------VLLKHGADVNARDIWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGK 114
Query: 353 KPIHVAAQNNFPEVAQIF 370
               ++  N   ++A+I 
Sbjct: 115 TAFDISIDNGNEDLAEIL 132

>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r Length = 136

Iteration: 1
 Score = 54.7 bits (130), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 32/89 (35%), Positives = 51/89 (57%), Gaps = 1/89 (1%)
Query: 320 TPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVT 379
           TPLHLAA+ G L++ ++LL  GA ++A D  G+ P+H+AA     E+ ++ L  + + V 
Sbjct: 49  TPLHLAAKRGHLEIVEVLLKHGADVNARDIWGRTPLHLAATVGHLEIVEVLLE-YGADVN 107
Query: 380 ATTKDGNTCAHIAAMQGSVGVIEELMKFD 408
           A  K G T   I+   G+  + E L K +
Sbjct: 108 AQDKFGKTAFDISIDNGNEDLAEILQKLN 136

>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r Length = 136

Iteration: 1
 Score = 52.4 bits (124), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 40/123 (32%), Positives = 63/123 (51%), Gaps = 5/123 (4%)
Query: 349 DQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIEELMKFD 408
           D G+K +         EV    L A+ + V A    G T  H+AA +G + ++E L+K  
Sbjct: 13  DLGKKLLEATRAGQDDEVR--ILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLK-- 68
Query: 409 RSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQ 468
               ++AR+ +   TPL LAA  GH  +V VL++ GA    ++K G TA  ++  NG+  
Sbjct: 69  HGADVNARD-IWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNED 127
Query: 469 VLE 471
           + E
Sbjct: 128 LAE 130

>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r Length = 136

Iteration: 1
 Score = 48.9 bits (115), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 30/79 (37%), Positives = 41/79 (51%)
Query: 423 TPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVY 482
           TPL LAA+ GH  +V VL+K GA     +  G T +HLAA  GH +++E +    A    
Sbjct: 49  TPLHLAAKRGHLEIVEVLLKHGADVNARDIWGRTPLHLAATVGHLEIVEVLLEYGADVNA 108
Query: 483 SKKLGVTALHVAAYFGQAD 501
             K G TA  ++   G  D
Sbjct: 109 QDKFGKTAFDISIDNGNED 127

>pdb|1AP7|A Chain A, P19-Ink4d From Mouse, Nmr, 20 Structures Length = 168

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 32/71 (45%), Positives = 41/71 (57%)
Query: 52  CALMLLKSGAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLAS 111
            AL LLK GA PN+    G +PVH AA+ G L TL++L+E G D    +  G  P+HLA 
Sbjct: 58  VALELLKQGASPNVQDASGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAI 117
Query: 112 RNCKAEVVDLL 122
           R   + VV  L
Sbjct: 118 REGHSSVVSFL 128

>pdb|1AP7|A Chain A, P19-Ink4d From Mouse, Nmr, 20 Structures Length = 168

Iteration: 1
 Score = 42.7 bits (99), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 43/155 (27%), Positives = 70/155 (45%), Gaps = 10/155 (6%)
Query: 358 AAQNNFPEVAQIFLR--AHPSLVTATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISA 415
           AA+ +  EV ++  R   HP    A  + G T   +  M GS  V  EL+K    G    
Sbjct: 18  AARGDVQEVRRLLHRELVHPD---ALNRFGKTALQVM-MFGSPAVALELLK---QGASPN 70
Query: 416 RNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRS 475
               +  +P+  AA  G  + ++VLV+ GA     + TG   +HLA + GH+ V+  +  
Sbjct: 71  VQDASGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIREGHSSVVSFLAP 130
Query: 476 SKALNVYSKKLGVTALHVAAYFGQADTVRELLSHV 510
              L+ +    G+T L +A   G  + +  L  H+
Sbjct: 131 ESDLH-HRDASGLTPLELARQRGAQNLMDILQGHM 164

>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4 Length = 136

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 38/138 (27%), Positives = 66/138 (47%), Gaps = 23/138 (16%)
Query: 233 LLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVSSGKSLKHSVMSFRL 292
           LL A   G  + V  ++ N A V+  D  G + LHLAA+ G+L++               
Sbjct: 18  LLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVE------------- 64
Query: 293 PPHNIIPNGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQ 352
                     ++  H A ++   +  +TPLHLAA  G L++ ++LL+ GA ++A D  G+
Sbjct: 65  ----------VLLKHGADVNASDIWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGK 114
Query: 353 KPIHVAAQNNFPEVAQIF 370
               ++  N   ++A+I 
Sbjct: 115 TAFDISIDNGNEDLAEIL 132

>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4 Length = 136

Iteration: 1
 Score = 55.5 bits (132), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 32/89 (35%), Positives = 52/89 (58%), Gaps = 1/89 (1%)
Query: 320 TPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVT 379
           TPLHLAA+ G L++ ++LL  GA ++A+D  G+ P+H+AA     E+ ++ L  + + V 
Sbjct: 49  TPLHLAAKRGHLEIVEVLLKHGADVNASDIWGRTPLHLAATVGHLEIVEVLLE-YGADVN 107
Query: 380 ATTKDGNTCAHIAAMQGSVGVIEELMKFD 408
           A  K G T   I+   G+  + E L K +
Sbjct: 108 AQDKFGKTAFDISIDNGNEDLAEILQKLN 136

>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4 Length = 136

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 39/123 (31%), Positives = 60/123 (48%), Gaps = 5/123 (4%)
Query: 349 DQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIEELMKFD 408
           D G+K +         EV    L A+ + V A    G T  H+AA +G + ++E L+K  
Sbjct: 13  DLGKKLLEATRAGQDDEVR--ILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKH- 69
Query: 409 RSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQ 468
             G     + +   TPL LAA  GH  +V VL++ GA    ++K G TA  ++  NG+  
Sbjct: 70  --GADVNASDIWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNED 127
Query: 469 VLE 471
           + E
Sbjct: 128 LAE 130

>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4 Length = 136

Iteration: 1
 Score = 48.9 bits (115), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 30/79 (37%), Positives = 41/79 (51%)
Query: 423 TPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVY 482
           TPL LAA+ GH  +V VL+K GA     +  G T +HLAA  GH +++E +    A    
Sbjct: 49  TPLHLAAKRGHLEIVEVLLKHGADVNASDIWGRTPLHLAATVGHLEIVEVLLEYGADVNA 108
Query: 483 SKKLGVTALHVAAYFGQAD 501
             K G TA  ++   G  D
Sbjct: 109 QDKFGKTAFDISIDNGNED 127

>pdb|1BLX|B Chain B, P19ink4dCDK6 COMPLEX Length = 166

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 32/71 (45%), Positives = 41/71 (57%)
Query: 52  CALMLLKSGAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLAS 111
            AL LLK GA PN+    G +PVH AA+ G L TL++L+E G D    +  G  P+HLA 
Sbjct: 56  VALELLKQGASPNVQDASGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAI 115
Query: 112 RNCKAEVVDLL 122
           R   + VV  L
Sbjct: 116 REGHSSVVSFL 126

>pdb|1BLX|B Chain B, P19ink4dCDK6 COMPLEX Length = 166

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 43/155 (27%), Positives = 70/155 (45%), Gaps = 10/155 (6%)
Query: 358 AAQNNFPEVAQIFLR--AHPSLVTATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISA 415
           AA+ +  EV ++  R   HP    A  + G T   +  M GS  V  EL+K    G    
Sbjct: 16  AARGDVQEVRRLLHRELVHPD---ALNRFGKTALQVM-MFGSPAVALELLK---QGASPN 68
Query: 416 RNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRS 475
               +  +P+  AA  G  + ++VLV+ GA     + TG   +HLA + GH+ V+  +  
Sbjct: 69  VQDASGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIREGHSSVVSFLAP 128
Query: 476 SKALNVYSKKLGVTALHVAAYFGQADTVRELLSHV 510
              L+ +    G+T L +A   G  + +  L  H+
Sbjct: 129 ESDLH-HRDASGLTPLELARQRGAQNLMDILQGHM 162

>pdb|2QC9|A Chain A, Mouse Notch 1 Ankyrin Repeat Intracellular Domain Length = 210

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 58/232 (25%), Positives = 97/232 (41%), Gaps = 40/232 (17%)
Query: 139 NSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGADVSLQTKQNHETAFHYCA 198
           N  +  G +ALH A + ++++             K LLEA AD  +Q      T  H   
Sbjct: 16  NQTDRTGETALHLAARYSRSD-----------AAKRLLEASADAXIQDNMG-RTPLHAAV 63
Query: 199 VAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVF 258
            A    V   +L   +       L+ +   G TPL++A       ++  ++N+HA V+  
Sbjct: 64  SADAQGVFQILLRNRATD-----LDARMHDGTTPLILAARLALEGMLEDLINSHADVNAV 118
Query: 259 DQEGRSALHLAAEHGYLKVSSGKSLKHSVMSFRLPPHNIIPNGFLVHDHAAVIDILTLRK 318
           D  G+SALH AA    +  +                  ++ NG       A  D+   ++
Sbjct: 119 DDLGKSALHWAAAVNNVDAAV----------------VLLKNG-------ANKDMQNNKE 155
Query: 319 QTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIF 370
           +TPL LAA  G  +  K+LLD  A+ D TD   + P  +A +    ++ ++ 
Sbjct: 156 ETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLL 207

>pdb|2QC9|A Chain A, Mouse Notch 1 Ankyrin Repeat Intracellular Domain Length = 210

Iteration: 1
 Score = 46.6 bits (109), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 29/87 (33%), Positives = 43/87 (49%)
Query: 319 QTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLV 378
           +T LHLAA   +    K LL+  A     D+ G+ P+H A   +   V QI LR   + +
Sbjct: 23  ETALHLAARYSRSDAAKRLLEASADAXIQDNMGRTPLHAAVSADAQGVFQILLRNRATDL 82
Query: 379 TATTKDGNTCAHIAAMQGSVGVIEELM 405
            A   DG T   +AA     G++E+L+
Sbjct: 83  DARMHDGTTPLILAARLALEGMLEDLI 109

>pdb|2RFM|A Chain A, Structure Of A Thermophilic Ankyrin Repeat Protein Length = 192

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 45/158 (28%), Positives = 76/158 (48%), Gaps = 10/158 (6%)
Query: 223 NKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKV----- 277
           N + S   TPL++AC  G    ++ ++ N  +++  D EG +AL  A ++  L +     
Sbjct: 29  NYRDSYNRTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLL 88
Query: 278 SSGKSLKHSVMSFRLPPHNIIPNGF-----LVHDHAAVIDILTLRKQTPLHLAAEAGQLQ 332
           S G ++     S + P    I  G+      + +H A ++   L  +TPL +A++ G+ +
Sbjct: 89  SKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSE 148
Query: 333 VCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIF 370
           + K LL+LGA I A D  G      A      EV +IF
Sbjct: 149 IVKKLLELGADISARDLTGLTAEASARIFGRQEVIKIF 186

>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s Length = 136

Iteration: 1
 Score = 56.6 bits (135), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 38/138 (27%), Positives = 65/138 (47%), Gaps = 23/138 (16%)
Query: 233 LLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVSSGKSLKHSVMSFRL 292
           LL A   G  + V  ++ N A V+  D  G + LHLAA+ G+L++               
Sbjct: 18  LLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVE------------- 64
Query: 293 PPHNIIPNGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQ 352
                     ++  H A ++      +TPLHLAA  G L++ ++LL+ GA ++A D  G+
Sbjct: 65  ----------VLLKHGADVNASDSWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGK 114
Query: 353 KPIHVAAQNNFPEVAQIF 370
               ++  N   ++A+I 
Sbjct: 115 TAFDISIDNGNEDLAEIL 132

>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s Length = 136

Iteration: 1
 Score = 56.6 bits (135), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 32/89 (35%), Positives = 52/89 (58%), Gaps = 1/89 (1%)
Query: 320 TPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVT 379
           TPLHLAA+ G L++ ++LL  GA ++A+D  G+ P+H+AA     E+ ++ L  + + V 
Sbjct: 49  TPLHLAAKRGHLEIVEVLLKHGADVNASDSWGRTPLHLAATVGHLEIVEVLLE-YGADVN 107
Query: 380 ATTKDGNTCAHIAAMQGSVGVIEELMKFD 408
           A  K G T   I+   G+  + E L K +
Sbjct: 108 AQDKFGKTAFDISIDNGNEDLAEILQKLN 136

>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s Length = 136

Iteration: 1
 Score = 49.7 bits (117), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 30/79 (37%), Positives = 41/79 (51%)
Query: 423 TPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVY 482
           TPL LAA+ GH  +V VL+K GA     +  G T +HLAA  GH +++E +    A    
Sbjct: 49  TPLHLAAKRGHLEIVEVLLKHGADVNASDSWGRTPLHLAATVGHLEIVEVLLEYGADVNA 108
Query: 483 SKKLGVTALHVAAYFGQAD 501
             K G TA  ++   G  D
Sbjct: 109 QDKFGKTAFDISIDNGNED 127

>pdb|1BD8|A Chain A, Structure Of Cdk Inhibitor P19ink4d Length = 156

Iteration: 1
 Score = 56.2 bits (134), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 31/71 (43%), Positives = 40/71 (56%)
Query: 52  CALMLLKSGAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLAS 111
            AL LLK GA PN+    G +PVH AA+ G L TL++L+E G D    +  G  P+HLA 
Sbjct: 50  IALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAV 109
Query: 112 RNCKAEVVDLL 122
           +     VV  L
Sbjct: 110 QEGHTAVVSFL 120

>pdb|1BD8|A Chain A, Structure Of Cdk Inhibitor P19ink4d Length = 156

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 45/155 (29%), Positives = 70/155 (45%), Gaps = 10/155 (6%)
Query: 358 AAQNNFPEVAQIFLR--AHPSLVTATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISA 415
           AA+ +  EV ++  R   HP    A  + G T   +  M GS  +  EL+K    G    
Sbjct: 10  AARGDVQEVRRLLHRELVHPD---ALNRFGKTALQVM-MFGSTAIALELLK---QGASPN 62
Query: 416 RNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRS 475
               +  +P+  AA  G  + ++VLV+ GA     + TG   +HLA Q GH  V+  + +
Sbjct: 63  VQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAA 122
Query: 476 SKALNVYSKKLGVTALHVAAYFGQADTVRELLSHV 510
              L+    + G+T L +A   G  D V  L  H+
Sbjct: 123 ESDLHRRDAR-GLTPLELALQRGAQDLVDILQGHM 156

>pdb|1BI8|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From The Structures Cdk6-P19ink4d Inhibitor Complex Length = 166

Iteration: 1
 Score = 56.2 bits (134), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 31/71 (43%), Positives = 40/71 (56%)
Query: 52  CALMLLKSGAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLAS 111
            AL LLK GA PN+    G +PVH AA+ G L TL++L+E G D    +  G  P+HLA 
Sbjct: 56  IALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAV 115
Query: 112 RNCKAEVVDLL 122
           +     VV  L
Sbjct: 116 QEGHTAVVSFL 126

>pdb|1BI8|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From The Structures Cdk6-P19ink4d Inhibitor Complex Length = 166

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 45/155 (29%), Positives = 70/155 (45%), Gaps = 10/155 (6%)
Query: 358 AAQNNFPEVAQIFLR--AHPSLVTATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISA 415
           AA+ +  EV ++  R   HP    A  + G T   +  M GS  +  EL+K    G    
Sbjct: 16  AARGDVQEVRRLLHRELVHPD---ALNRFGKTALQVM-MFGSTAIALELLK---QGASPN 68
Query: 416 RNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRS 475
               +  +P+  AA  G  + ++VLV+ GA     + TG   +HLA Q GH  V+  + +
Sbjct: 69  VQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAA 128
Query: 476 SKALNVYSKKLGVTALHVAAYFGQADTVRELLSHV 510
              L+    + G+T L +A   G  D V  L  H+
Sbjct: 129 ESDLHRRDAR-GLTPLELALQRGAQDLVDILQGHM 162

>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin Repeat Domain Of Varp Length = 269

Iteration: 1
 Score = 55.8 bits (133), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 53/176 (30%), Positives = 78/176 (44%), Gaps = 7/176 (3%)
Query: 341 GASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGV 400
           G  ++ T   G  P+HVAA +   ++  + L+ H +   A   D     H+A  QG   V
Sbjct: 76  GLGVNVTSQDGSSPLHVAALHGRADLIPLLLK-HGANAGARNADQAVPLHLACQQGHFQV 134
Query: 401 IEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHL 460
           ++ L+    S     +  ++  TPL  A  GGH  +V +L++ GAS    N  G TA+H 
Sbjct: 135 VKCLLD---SNAKPNKKDLSGNTPLIYACSGGHHELVALLLQHGASINASNNKGNTALHE 191
Query: 461 AAQNGHNQVLEEMRSSKALNVYSKKLGVTALHVAAYFGQADTVRELLSHVPGTVKS 516
           A    H  V+E +    A      K   TA+  A    Q   + ELL  VP  V S
Sbjct: 192 AVIEKHVFVVELLLLHGASVQVLNKRQRTAVDCAE---QNSKIMELLQVVPSCVAS 244

>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin Repeat Domain Of Varp Length = 269

Iteration: 1
 Score = 46.6 bits (109), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 54/183 (29%), Positives = 75/183 (40%), Gaps = 14/183 (7%)
Query: 379 TATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVR 438
           T +  D   C  +          + L K   SG+         ++PL +AA  G A+++ 
Sbjct: 44  TVSAADPEFCHPLCQCPKCAPAQKRLAKVPASGLGVNVTSQDGSSPLHVAALHGRADLIP 103
Query: 439 VLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLGVTALHVAAYFG 498
           +L+K GA+    N      +HLA Q GH QV++ +  S A        G T L  A   G
Sbjct: 104 LLLKHGANAGARNADQAVPLHLACQQGHFQVVKCLLDSNAKPNKKDLSGNTPLIYACSGG 163
Query: 499 QADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVR-LLLNSAG 557
             + V  LL H           GAS      +  G T LH A    +  VV  LLL+ A 
Sbjct: 164 HHELVALLLQH-----------GASI--NASNNKGNTALHEAVIEKHVFVVELLLLHGAS 210
Query: 558 VQV 560
           VQV
Sbjct: 211 VQV 213

>pdb|2RFA|A Chain A, Crystal Structure Of The Mouse Trpv6 Ankyrin Repeat Domain Length = 232

Iteration: 1
 Score = 55.5 bits (132), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 46/159 (28%), Positives = 75/159 (47%), Gaps = 19/159 (11%)
Query: 319 QTPLHLAAEAGQLQ-VCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSL 377
           ++PL LAA+   +Q + KLL   G  +      G+  +H+AA  +  E A + + A P L
Sbjct: 4   ESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPEL 63
Query: 378 V----TATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISAR-----------NRVTEA 422
           V    T+   +G T  HIA +  +V ++  L+   R   +SAR           N +   
Sbjct: 64  VFEPMTSELYEGQTALHIAVINQNVNLVRALLA--RGASVSARATGSVFHYRPHNLIYYG 121
Query: 423 T-PLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHL 460
             PL  AA  G   +VR+L++ GA    ++  G T +H+
Sbjct: 122 EHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHI 160

>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo Form) Length = 175

Iteration: 1
 Score = 55.1 bits (131), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 46/169 (27%), Positives = 73/169 (43%), Gaps = 38/169 (22%)
Query: 317 RKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPS 376
           R+ TPLH AA   ++ V + LL  GA + A D  G  P+H A      EVA++ ++    
Sbjct: 45  RQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVK---- 100
Query: 377 LVTATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANV 436
                              G+V  + +L KF               TPL  AA  G   +
Sbjct: 101 ------------------HGAVVNVADLWKF---------------TPLHEAAAKGKYEI 127
Query: 437 VRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKK 485
            ++L++ GA  T +N+ G T + L  ++G   + + +R   AL   +KK
Sbjct: 128 CKLLLQHGADPTKKNRDGNTPLDL-VKDGDTDIQDLLRGDAALLDAAKK 175

>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From Lactococcal Phage Tp901-1 Length = 136

Iteration: 1
 Score = 54.7 bits (130), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 38/125 (30%), Positives = 59/125 (47%), Gaps = 13/125 (10%)
Query: 428 AAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLG 487
           AA  G  + VR+L+  GA    E+K G T +HLAA N H +++E +  + A       +G
Sbjct: 21  AARAGQDDEVRILMANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADVNAIDAIG 80
Query: 488 VTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNEN 547
            T LH+ A +G  + V  LL H      +D      F        G T   ++  +GNE+
Sbjct: 81  ETPLHLVAMYGHLEIVEVLLKH-----GADVNAQDKF--------GKTAFDISIDNGNED 127
Query: 548 VVRLL 552
           +  +L
Sbjct: 128 LAEIL 132

>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In Complex With Peptide From Human 3bp2 Length = 165

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 44/163 (26%), Positives = 70/163 (42%), Gaps = 38/163 (23%)
Query: 317 RKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPS 376
           R+ TPLH AA   ++ V + LL  GA + A D  G  P+H A      EVA++ ++    
Sbjct: 41  RQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVK---- 96
Query: 377 LVTATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANV 436
                              G+V  + +L KF               TPL  AA  G   +
Sbjct: 97  ------------------HGAVVNVADLWKF---------------TPLHEAAAKGKYEI 123
Query: 437 VRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKAL 479
            ++L++ GA  T +N+ G T + L  ++G   + + +R   AL
Sbjct: 124 CKLLLQHGADPTKKNRDGNTPLDL-VKDGDTDIQDLLRGDAAL 165

>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In Complex With Peptide From Human Mcl1 Length = 167

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 44/163 (26%), Positives = 70/163 (42%), Gaps = 38/163 (23%)
Query: 317 RKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPS 376
           R+ TPLH AA   ++ V + LL  GA + A D  G  P+H A      EVA++ ++    
Sbjct: 43  RQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVK---- 98
Query: 377 LVTATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANV 436
                              G+V  + +L KF               TPL  AA  G   +
Sbjct: 99  ------------------HGAVVNVADLWKF---------------TPLHEAAAKGKYEI 125
Query: 437 VRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKAL 479
            ++L++ GA  T +N+ G T + L  ++G   + + +R   AL
Sbjct: 126 CKLLLQHGADPTKKNRDGNTPLDL-VKDGDTDIQDLLRGDAAL 167

>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat Domain In Complex With Pinch1 Lim1 Domain Length = 179

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 35/122 (28%), Positives = 61/122 (50%), Gaps = 11/122 (9%)
Query: 34  GAGPNLTNIAARVKDGDRCALMLLKSGAGPNLT--TDDGQTPVHAAAKYGNLVTLQLLLE 91
           G+   + +I  + ++G+  A+ L       +L    D G +P+H A + G    +++L+ 
Sbjct: 1   GSPEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIM 60
Query: 92  DGGDPMYKNKIGETPLHLASRNCKAEVVDLLIQFVQNISQEKVLEYVNSVNEDGASALHY 151
            G      N+  +TPLHLA+ +   ++V  L+Q+  +I         N+VNE G   LHY
Sbjct: 61  RGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADI---------NAVNEHGNVPLHY 111
Query: 152 AC 153
           AC
Sbjct: 112 AC 113

>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat Domain In Complex With Pinch1 Lim1 Domain Length = 179

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 35/137 (25%), Positives = 61/137 (44%), Gaps = 23/137 (16%)
Query: 222 LNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVSSGK 281
           LN+    G++PL  AC  G   +V  ++   AR++V ++   + LHLAA HG+      +
Sbjct: 32  LNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGH------R 85
Query: 282 SLKHSVMSFRLPPHNIIPNGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLG 341
            +   ++ ++                 A I+ +      PLH A   GQ QV + L+  G
Sbjct: 86  DIVQKLLQYK-----------------ADINAVNEHGNVPLHYACFWGQDQVAEDLVANG 128
Query: 342 ASIDATDDQGQKPIHVA 358
           A +   +  G+ P+  A
Sbjct: 129 ALVSICNKYGEMPVDKA 145

>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat Domain In Complex With Pinch1 Lim1 Domain Length = 179

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/98 (33%), Positives = 50/98 (51%), Gaps = 3/98 (3%)
Query: 390 HIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTD 449
           H A  +G   V+E L+   R   I+  NR  + TPL LAA  GH ++V+ L++  A    
Sbjct: 44  HWACREGRSAVVEMLIM--RGARINVMNR-GDDTPLHLAASHGHRDIVQKLLQYKADINA 100
Query: 450 ENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLG 487
            N+ G   +H A   G +QV E++ ++ AL     K G
Sbjct: 101 VNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYG 138

>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex Length = 171

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 34/117 (29%), Positives = 59/117 (50%), Gaps = 11/117 (9%)
Query: 39  LTNIAARVKDGDRCALMLLKSGAGPNLT--TDDGQTPVHAAAKYGNLVTLQLLLEDGGDP 96
           + +I  + ++G+  A+ L       +L    D G +P+H A + G    +++L+  G   
Sbjct: 1   MDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARI 60
Query: 97  MYKNKIGETPLHLASRNCKAEVVDLLIQFVQNISQEKVLEYVNSVNEDGASALHYAC 153
              N+  +TPLHLA+ +   ++V  L+Q+  +I         N+VNE G   LHYAC
Sbjct: 61  NVMNRGDDTPLHLAASHGHRDIVQKLLQYKADI---------NAVNEHGNVPLHYAC 108

>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex Length = 171

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/98 (33%), Positives = 50/98 (51%), Gaps = 3/98 (3%)
Query: 390 HIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTD 449
           H A  +G   V+E L+   R   I+  NR  + TPL LAA  GH ++V+ L++  A    
Sbjct: 39  HWACREGRSAVVEMLIM--RGARINVMNR-GDDTPLHLAASHGHRDIVQKLLQYKADINA 95
Query: 450 ENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLG 487
            N+ G   +H A   G +QV E++ ++ AL     K G
Sbjct: 96  VNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYG 133

>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And Its Functional Consequences Length = 137

Iteration: 1
 Score = 53.1 bits (126), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 39/127 (30%), Positives = 59/127 (46%), Gaps = 23/127 (18%)
Query: 229 GWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVSSGKSLKHSVM 288
           G T L IA  +G +  V  +L N +  +V D  G + LH A  HG+LKV           
Sbjct: 10  GETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVE--------- 60
Query: 289 SFRLPPHNIIPNGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATD 348
                         L+  H A+++    +  +PLH AA+ G + + KLLL  GAS +A +
Sbjct: 61  --------------LLLQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVN 106
Query: 349 DQGQKPI 355
             G +P+
Sbjct: 107 IFGLRPV 113

>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And Its Functional Consequences Length = 137

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 27/94 (28%), Positives = 48/94 (51%), Gaps = 1/94 (1%)
Query: 317 RKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPS 376
           R +T LH+A+  G +   + LL  G+  +  D  G  P+H A  +   +V ++ L+ H +
Sbjct: 9   RGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQ-HKA 67
Query: 377 LVTATTKDGNTCAHIAAMQGSVGVIEELMKFDRS 410
           LV  T    ++  H AA  G V +++ L+ +  S
Sbjct: 68  LVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGAS 101

>pdb|2FO1|E Chain E, Crystal Structure Of The Csl-Notch-Mastermind Ternary Complex Bound To Dna Length = 373

Iteration: 1
 Score = 52.4 bits (124), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 55/218 (25%), Positives = 94/218 (43%), Gaps = 37/218 (16%)
Query: 169 QKTVKLLLEAGADVSLQTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSI 228
           ++ V  L +AGAD ++  K +  +A H  A    N      +  ++ T++   + +    
Sbjct: 179 RRLVAYLXKAGADPTIYNK-SERSALHQAAA---NRDFGXXVYXLNSTKLKGDIEELDRN 234
Query: 229 GWTPL-LIACNRGHMELVNTML----------NNHARVDVFDQEGRSALHLAAEHGYLKV 277
           G T L ++A N G  ++ +  L          +  AR D    +GR+ALH AA+     V
Sbjct: 235 GXTALXIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQ-----V 289
Query: 278 SSGKSLKHSVMSFRLPPHNIIPNGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLL 337
           S+   +K                 +LV +  +  D      +TP+ LAA+ G+++V   L
Sbjct: 290 SNXPIVK-----------------YLVGEKGSNKDKQDEDGKTPIXLAAQEGRIEVVXYL 332
Query: 338 LDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHP 375
           +  GAS++A D        +A  NN   +  IF R  P
Sbjct: 333 IQQGASVEAVDATDHTARQLAQANNHHNIVDIFDRCRP 370

>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar Affinity To Her2 Length = 136

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/89 (35%), Positives = 50/89 (56%), Gaps = 1/89 (1%)
Query: 320 TPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVT 379
           TPL+LA   G L++ ++LL  GA ++A D  G  P+H+AA     E+A++ L+ H + V 
Sbjct: 49  TPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLK-HGADVN 107
Query: 380 ATTKDGNTCAHIAAMQGSVGVIEELMKFD 408
           A  K G T   I+   G+  + E L K +
Sbjct: 108 AQDKFGKTAFDISIGNGNEDLAEILQKLN 136

>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar Affinity To Her2 Length = 136

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/125 (26%), Positives = 58/125 (46%), Gaps = 13/125 (10%)
Query: 428 AAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLG 487
           AA  G  + VR+L+  GA    +++ G T ++LA  +GH +++E +  + A       +G
Sbjct: 21  AARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIG 80
Query: 488 VTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNEN 547
            T LH+AA+ G  +    LL H       D             + G T   ++  +GNE+
Sbjct: 81  FTPLHLAAFIGHLEIAEVLLKHGADVNAQD-------------KFGKTAFDISIGNGNED 127
Query: 548 VVRLL 552
           +  +L
Sbjct: 128 LAEIL 132

>pdb|3V2X|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The Ankyrin Repeat Domains Of Human Ankra2 Length = 167

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 36/129 (27%), Positives = 61/129 (47%), Gaps = 20/129 (15%)
Query: 64  NLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVVDLLI 123
           N T ++G TP+  AA +G +  ++ LL++G DP    K  E+ L LA      ++V +L+
Sbjct: 30  NHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLL 89
Query: 124 QFVQNISQEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGADVS 183
               +         VN  + +G + L YA                 K VK+LLE+GAD +
Sbjct: 90  DCGVD---------VNEYDWNGGTPLLYAVHGNHV-----------KCVKMLLESGADPT 129
Query: 184 LQTKQNHET 192
           ++T   + +
Sbjct: 130 IETDSGYNS 138

>pdb|3V2X|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The Ankyrin Repeat Domains Of Human Ankra2 Length = 167

Iteration: 1
 Score = 45.8 bits (107), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 36/134 (26%), Positives = 63/134 (47%), Gaps = 8/134 (5%)
Query: 344 IDATDDQGQKPIHVAAQNNFPEVAQIFLR--AHPSLVTATTKDGNTCAHIAAMQGSVGVI 401
           I+ TD++G  P+  AA +    V +  L+  A P L+    K   +   +A  +G   ++
Sbjct: 29  INHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLG---KGRESALSLACSKGYTDIV 85
Query: 402 EELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLA 461
           + L+     GV          TPL  A  G H   V++L+++GA  T E  +G+ ++ LA
Sbjct: 86  KMLLD---CGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLA 142
Query: 462 AQNGHNQVLEEMRS 475
              G+  V + + S
Sbjct: 143 VALGYRSVQQVIES 156

>pdb|3SO8|A Chain A, Crystal Structure Of Ankra Length = 162

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 36/129 (27%), Positives = 61/129 (47%), Gaps = 20/129 (15%)
Query: 64  NLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVVDLLI 123
           N T ++G TP+  AA +G +  ++ LL++G DP    K  E+ L LA      ++V +L+
Sbjct: 28  NHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLL 87
Query: 124 QFVQNISQEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGADVS 183
               +         VN  + +G + L YA                 K VK+LLE+GAD +
Sbjct: 88  DCGVD---------VNEYDWNGGTPLLYAVHGNHV-----------KCVKMLLESGADPT 127
Query: 184 LQTKQNHET 192
           ++T   + +
Sbjct: 128 IETDSGYNS 136

>pdb|3SO8|A Chain A, Crystal Structure Of Ankra Length = 162

Iteration: 1
 Score = 45.8 bits (107), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 36/134 (26%), Positives = 63/134 (47%), Gaps = 8/134 (5%)
Query: 344 IDATDDQGQKPIHVAAQNNFPEVAQIFLR--AHPSLVTATTKDGNTCAHIAAMQGSVGVI 401
           I+ TD++G  P+  AA +    V +  L+  A P L+    K   +   +A  +G   ++
Sbjct: 27  INHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLG---KGRESALSLACSKGYTDIV 83
Query: 402 EELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLA 461
           + L+     GV          TPL  A  G H   V++L+++GA  T E  +G+ ++ LA
Sbjct: 84  KMLLD---CGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLA 140
Query: 462 AQNGHNQVLEEMRS 475
              G+  V + + S
Sbjct: 141 VALGYRSVQQVIES 154

>pdb|3V2O|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The Ankyrin Repeat Domains Of Human Ankra2 Length = 183

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 36/129 (27%), Positives = 61/129 (47%), Gaps = 20/129 (15%)
Query: 64  NLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVVDLLI 123
           N T ++G TP+  AA +G +  ++ LL++G DP    K  E+ L LA      ++V +L+
Sbjct: 46  NHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLL 105
Query: 124 QFVQNISQEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGADVS 183
               +         VN  + +G + L YA                 K VK+LLE+GAD +
Sbjct: 106 DCGVD---------VNEYDWNGGTPLLYAVHGNHV-----------KCVKMLLESGADPT 145
Query: 184 LQTKQNHET 192
           ++T   + +
Sbjct: 146 IETDSGYNS 154

>pdb|3V2O|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The Ankyrin Repeat Domains Of Human Ankra2 Length = 183

Iteration: 1
 Score = 45.8 bits (107), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 36/134 (26%), Positives = 63/134 (47%), Gaps = 8/134 (5%)
Query: 344 IDATDDQGQKPIHVAAQNNFPEVAQIFLR--AHPSLVTATTKDGNTCAHIAAMQGSVGVI 401
           I+ TD++G  P+  AA +    V +  L+  A P L+    K   +   +A  +G   ++
Sbjct: 45  INHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLG---KGRESALSLACSKGYTDIV 101
Query: 402 EELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLA 461
           + L+     GV          TPL  A  G H   V++L+++GA  T E  +G+ ++ LA
Sbjct: 102 KMLLD---CGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLA 158
Query: 462 AQNGHNQVLEEMRS 475
              G+  V + + S
Sbjct: 159 VALGYRSVQQVIES 172

>pdb|1OT8|A Chain A, Structure Of The Ankyrin Domain Of The Drosophila Notch Receptor Length = 239

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 46/147 (31%), Positives = 73/147 (49%), Gaps = 3/147 (2%)
Query: 319 QTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLV 378
           +T LHLAA   +    K LLD GA  ++ D+ G+ P+H A   +   V QI LR   + +
Sbjct: 52  ETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHAAVAADAMGVFQILLRNRATNL 111
Query: 379 TATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVR 438
            A   DG T   +AA     G++E+L+  D + + +A N  +  T L  AA   +   V 
Sbjct: 112 NARMHDGTTPLILAARLAIEGMVEDLITAD-ADINAADN--SGKTALHWAAAVNNTEAVN 168
Query: 439 VLVKAGASCTDENKTGFTAVHLAAQNG 465
           +L+   A+   ++    T + LAA+ G
Sbjct: 169 ILLMHHANRDAQDDKDETPLFLAAREG 195

>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n) Length = 168

Iteration: 1
 Score = 49.3 bits (116), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 29/72 (40%), Positives = 40/72 (55%)
Query: 53  ALMLLKSGAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASR 112
           A  LL  GA P+L    G   +H AA+ G L TLQ LLE+  D   ++  G  PLHLA++
Sbjct: 53  ARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLENQADVNIEDNEGNLPLHLAAK 112
Query: 113 NCKAEVVDLLIQ 124
                VV+ L++
Sbjct: 113 EGHLRVVEFLVK 124

>pdb|1MX2|A Chain A, Structure Of F71n Mutant Of P18ink4c Length = 168

Iteration: 1
 Score = 48.5 bits (114), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 29/72 (40%), Positives = 39/72 (54%)
Query: 53  ALMLLKSGAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASR 112
           A  LL  GA P+L    G   +H AA+ G L TLQ LLE   D   ++  G  PLHLA++
Sbjct: 53  ARRLLLRGANPDLKDRTGNAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAK 112
Query: 113 NCKAEVVDLLIQ 124
                VV+ L++
Sbjct: 113 EGHLRVVEFLVK 124

>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q) Length = 168

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 29/72 (40%), Positives = 39/72 (54%)
Query: 53  ALMLLKSGAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASR 112
           A  LL  GA P+L    G   +H AA+ G L TLQ LLE   D   ++  G  PLHLA++
Sbjct: 53  ARRLLLRGANPDLKDRTGFAVIHDAARAGQLDTLQTLLEFQADVNIEDNEGNLPLHLAAK 112
Query: 113 NCKAEVVDLLIQ 124
                VV+ L++
Sbjct: 113 EGHLRVVEFLVK 124

>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q) Length = 168

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 47/90 (52%), Gaps = 1/90 (1%)
Query: 322 LHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTAT 381
           +H AA AGQL   + LL+  A ++  D++G  P+H+AA+     V +  ++   S V   
Sbjct: 74  IHDAARAGQLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHR 133
Query: 382 TKDGNTCAHIAAMQGSVGVIEELMKFDRSG 411
              G+T   +A + G   V+  LM+ + +G
Sbjct: 134 NHKGDTACDLARLYGRNEVV-SLMQANGAG 162

>pdb|3EHQ|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor Length = 222

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 35/106 (33%), Positives = 56/106 (52%), Gaps = 7/106 (6%)
Query: 409 RSGVISARNRVTEA-----TPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQ 463
           R+G+I + N V E       PL  AA+ G+ + +R  +         +K G TA++ A  
Sbjct: 57  RTGLIPS-NYVAEQAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACH 115
Query: 464 NGHNQVLEEMRSSKALNVYSK-KLGVTALHVAAYFGQADTVRELLS 508
            GH  ++E + +   + +  + KLG TALH AA+ G AD V+ LL+
Sbjct: 116 GGHKDIVEXLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLA 161

>pdb|1IHB|A Chain A, Crystal Structure Of P18-Ink4c(Ink6) Length = 162

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 29/72 (40%), Positives = 39/72 (54%)
Query: 53  ALMLLKSGAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASR 112
           A  LL  GA P+L    G   +H AA+ G L TLQ LLE   D   ++  G  PLHLA++
Sbjct: 53  ARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAK 112
Query: 113 NCKAEVVDLLIQ 124
                VV+ L++
Sbjct: 113 EGHLRVVEFLVK 124

>pdb|3ZKJ|A Chain A, Crystal Structure Of Ankyrin Repeat And Socs Box-containing Protein 9 (asb9) In Complex With Elonginb And Elonginc Length = 261

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 59/243 (24%), Positives = 100/243 (41%), Gaps = 47/243 (19%)
Query: 138 VNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGADVSLQTKQNHETAFHYC 197
           VN +  D  S LH AC                  VK+LL+ GA V+  T   H   F+ C
Sbjct: 29  VNIITADHVSPLHEACLGGHL-----------SCVKILLKHGAQVNGVTADWHTPLFNAC 77
Query: 198 AVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDV 257
            V+G+ D +  +L+  +  +    L        +P+  A  RGH+E VN+++     +D 
Sbjct: 78  -VSGSWDCVNLLLQHGASVQPESDLA-------SPIHEAARRGHVECVNSLIAYGGNIDH 129
Query: 258 FDQEGRSALHLAAEHGYLKVSSGKSLKHSVMSFRLPPHNIIPNGFLVHDHAAVIDILTLR 317
                 + L+LA E+                  R     ++ +G  V+            
Sbjct: 130 KISHLGTPLYLACENQQ----------------RACVKKLLESGADVNQGKG-------- 165
Query: 318 KQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAH--P 375
           + +PLH  A     ++  LL+D GA   A + +G++P+ +    +   +AQ+FL     P
Sbjct: 166 QDSPLHAVARTASEELACLLMDFGADTQAKNAEGKRPVELVPPES--PLAQLFLEREGPP 223
Query: 376 SLV 378
           SL+
Sbjct: 224 SLM 226

>pdb|1BU9|A Chain A, Solution Structure Of P18-Ink4c, 21 Structures Length = 168

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 29/72 (40%), Positives = 39/72 (54%)
Query: 53  ALMLLKSGAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASR 112
           A  LL  GA P+L    G   +H AA+ G L TLQ LLE   D   ++  G  PLHLA++
Sbjct: 53  ARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAK 112
Query: 113 NCKAEVVDLLIQ 124
                VV+ L++
Sbjct: 113 EGHLRVVEFLVK 124

>pdb|3D9H|A Chain A, Crystal Structure Of The Splice Variant Of Human Asb9 (Hasb9-2), An Ankyrin Repeat Protein Length = 285

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 55/235 (23%), Positives = 95/235 (40%), Gaps = 45/235 (19%)
Query: 138 VNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGADVSLQTKQNHETAFHYC 197
           VN +  D  S LH AC                  VK+LL+ GA V+  T   H   F+ C
Sbjct: 85  VNIITADHVSPLHEACLGGHL-----------SCVKILLKHGAQVNGVTADWHTPLFNAC 133
Query: 198 AVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDV 257
            V+G+ D +  +L+  +  +    L        +P+  A  RGH+E VN+++     +D 
Sbjct: 134 -VSGSWDCVNLLLQHGASVQPESDLA-------SPIHEAARRGHVECVNSLIAYGGNIDH 185
Query: 258 FDQEGRSALHLAAEHGYLKVSSGKSLKHSVMSFRLPPHNIIPNGFLVHDHAAVIDILTLR 317
                 + L+LA E+                  R     ++ +G  V+            
Sbjct: 186 KISHLGTPLYLACEN----------------QQRACVKKLLESGADVNQGKG-------- 221
Query: 318 KQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLR 372
           + +PLH        ++  LL+D GA   A + +G++P+ +    +   +AQ+FL 
Sbjct: 222 QDSPLHAVVRTASEELACLLMDFGADTQAKNAEGKRPVELVPPES--PLAQLFLE 274

>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain Fold Length = 92

Iteration: 1
 Score = 46.2 bits (108), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 22/51 (43%), Positives = 32/51 (62%)
Query: 320 TPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIF 370
           TPLHLAA  G L+V KLLL+ GA ++A D  G+    ++  N   ++A+I 
Sbjct: 41  TPLHLAARNGHLEVVKLLLEAGADVNAQDKFGKTAFDISIDNGNEDLAEIL 91

>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain Fold Length = 92

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 26/74 (35%), Positives = 40/74 (54%)
Query: 428 AAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLG 487
           AA  G  + VR+L+  GA    ++K G T +HLAA+NGH +V++ +  + A      K G
Sbjct: 13  AARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVNAQDKFG 72
Query: 488 VTALHVAAYFGQAD 501
            TA  ++   G  D
Sbjct: 73  KTAFDISIDNGNED 86

>pdb|1YMP|A Chain A, The Crystal Structure Of A Partial Mouse Notch-1 Ankyrin Domain: Repeats 4 Through 7 Preserve An Ankyrin Fold Length = 135

Iteration: 1
 Score = 45.4 bits (106), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 39/149 (26%), Positives = 68/149 (45%), Gaps = 23/149 (15%)
Query: 222 LNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVSSGK 281
           L+ +   G TPL++A       ++  ++N+HA V+  D  G+SALH AA    +  +   
Sbjct: 8   LDARMHDGTTPLILAARLALEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVV- 66
Query: 282 SLKHSVMSFRLPPHNIIPNGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLG 341
                          ++ NG       A  D+   +++TPL LAA  G  +  K+LLD  
Sbjct: 67  ---------------LLKNG-------ANKDMQNNKEETPLFLAAREGSYETAKVLLDHF 104
Query: 342 ASIDATDDQGQKPIHVAAQNNFPEVAQIF 370
           A+ D TD   + P  +A +    ++ ++ 
Sbjct: 105 ANRDITDHMDRLPRDIAQERMHHDIVRLL 133

>pdb|3HRA|A Chain A, Crystal Structure Of Ef0377 An Ankyrin Repeat Protein Length = 201

Iteration: 1
 Score = 45.4 bits (106), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 41/174 (23%), Positives = 82/174 (47%), Gaps = 11/174 (6%)
Query: 303 LVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKP-IHVAAQN 361
           ++ D    +D +     TPL++A     +++ K L+D GA I+  +     P ++  AQ 
Sbjct: 24  ILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGAQG 83
Query: 362 NFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARN---- 417
               +A +   A P L       GN     AA +G +  ++ L++  R  +    +    
Sbjct: 84  RTEILAYMLKHATPDLNKHNRYGGNALIP-AAEKGHIDNVKLLLEDGREDIDFQNDFGYT 142
Query: 418 RVTEATPLQLAAEGG--HANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQV 469
            + EA  L+   EG   + ++V++L++ GA  + ++ +G TA+  A Q G+ ++
Sbjct: 143 ALIEAVGLR---EGNQLYQDIVKLLMENGADQSIKDNSGRTAMDYANQKGYTEI 193

>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module Length = 91

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 25/74 (33%), Positives = 40/74 (54%)
Query: 428 AAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLG 487
           AA  G  + VR+L+  GA    ++K G+T +HLAA+ GH +++E +  + A      K G
Sbjct: 9   AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFG 68
Query: 488 VTALHVAAYFGQAD 501
            TA  ++   G  D
Sbjct: 69  KTAFDISIDNGNED 82

>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain Fold Length = 110

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 22/51 (43%), Positives = 31/51 (60%)
Query: 320 TPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIF 370
           TPLHLAA  G L+V KLLL+ GA + A D  G+    ++  N   ++A+I 
Sbjct: 59  TPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISIDNGNEDLAEIL 109

>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain Fold Length = 110

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 26/74 (35%), Positives = 40/74 (54%)
Query: 428 AAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLG 487
           AA  G  + VR+L+  GA    ++K G T +HLAA+NGH +V++ +  + A      K G
Sbjct: 31  AARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFG 90
Query: 488 VTALHVAAYFGQAD 501
            TA  ++   G  D
Sbjct: 91  KTAFDISIDNGNED 104

>pdb|3V30|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The Ankyrin Repeat Domains Of Human Rfxank Length = 172

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 37/149 (24%), Positives = 58/149 (38%), Gaps = 23/149 (15%)
Query: 222 LNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVSSGK 281
           +NK    G+TPL+ A   G +E V  +L   A   +  +E  SAL LA+  GY  +    
Sbjct: 29  VNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVG-- 86
Query: 282 SLKHSVMSFRLPPHNIIPNGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLG 341
                                L+ +    I+I      TPL  A     ++  + LL  G
Sbjct: 87  ---------------------LLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARG 125
Query: 342 ASIDATDDQGQKPIHVAAQNNFPEVAQIF 370
           A +    D G  P+ +A    + +V Q+ 
Sbjct: 126 ADLTTEADSGYTPMDLAVALGYRKVQQVI 154

>pdb|4A63|B Chain B, Crystal Structure Of The P73-Aspp2 Complex At 2.6a Resolution Length = 239

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 22/70 (31%), Positives = 35/70 (50%)
Query: 320 TPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVT 379
           T LH A  AG  ++ K L+  G +++A D  G  P+H AA  N  +V +  + +  ++  
Sbjct: 72  TALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFA 131
Query: 380 ATTKDGNTCA 389
            T  D  T A
Sbjct: 132 MTYSDMQTAA 141

>pdb|1YCS|B Chain B, P53-53bp2 Complex Length = 239

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 22/70 (31%), Positives = 35/70 (50%)
Query: 320 TPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVT 379
           T LH A  AG  ++ K L+  G +++A D  G  P+H AA  N  +V +  + +  ++  
Sbjct: 72  TALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFA 131
Query: 380 ATTKDGNTCA 389
            T  D  T A
Sbjct: 132 MTYSDMQTAA 141

>pdb|3LJN|A Chain A, Ankyrin Repeat Protein From Leishmania Major Length = 364

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 56/224 (25%), Positives = 93/224 (41%), Gaps = 41/224 (18%)
Query: 66  TTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVVDLLIQF 125
           + D+    +H AA+ G    ++ L+E G  P  +N+ G T LHLA   CK   VD     
Sbjct: 16  SDDENXEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLA---CKFGCVD----- 67
Query: 126 VQNISQEKVLEYVNSVNE-----DGASALHYACQVTKAELIPIT---SKEDQKTVKLLLE 177
                     +Y+ SV E      G   +H A    K +L+      +KE  +  + LL 
Sbjct: 68  --------TAKYLASVGEVHSLWHGQKPIHLAVXANKTDLVVALVEGAKERGQXPESLLN 119
Query: 178 AGADVSLQTKQNH------ETAFHYCAVAGNNDV-LTGMLEQMSGTEISKALNKQTSIGW 230
              +  +    +H      +TA H+C   G   +    +L Q+  +  +K    +     
Sbjct: 120 ECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEXIKILVQLGASPTAKDKADE----- 174
Query: 231 TPLLIAC---NRGHMELVNTMLNNHA--RVDVFDQEGRSALHLA 269
           TPL  A    NR  ++L    + + +  R+D  +++G S LH A
Sbjct: 175 TPLXRAXEFRNREALDLXXDTVPSKSSLRLDYANKQGNSHLHWA 218

>pdb|3UXG|A Chain A, Crystal Structure Of Rfxank Length = 172

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 37/149 (24%), Positives = 58/149 (38%), Gaps = 23/149 (15%)
Query: 222 LNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVSSGK 281
           +NK    G+TPL+ A   G +E V  +L   A   +  +E  SAL LA+  GY  +    
Sbjct: 29  VNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVG-- 86
Query: 282 SLKHSVMSFRLPPHNIIPNGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLG 341
                                L+ +    I+I      TPL  A     ++  + LL  G
Sbjct: 87  ---------------------LLLERDVDINIYDWNGGTPLLYAVHGNHVKCVEALLARG 125
Query: 342 ASIDATDDQGQKPIHVAAQNNFPEVAQIF 370
           A +    D G  P+ +A    + +V Q+ 
Sbjct: 126 ADLTTEADSGYTPMDLAVALGYRKVQQVI 154

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	567
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	7e-88
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	7e-84
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	8e-68
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	7e-67
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-55
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-50
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	3e-40
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	2e-65
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	5e-60
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	1e-56
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	4e-48
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	3e-41
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	2e-08
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	2e-58
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	6e-58
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	5e-54
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	4e-23
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	1e-13
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	2e-04
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	4e-53
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	1e-45
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	4e-45
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	9e-45
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	7e-44
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	8e-36
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	2e-35
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	2e-18
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	2e-52
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	6e-43
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	4e-42
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	9e-42
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	9e-40
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	2e-32
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	2e-25
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	3e-20
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	5e-18
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	2e-51
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	2e-48
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	3e-48
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	2e-44
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	3e-41
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	6e-29
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	2e-50
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	2e-48
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	6e-48
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	5e-47
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	1e-40
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	2e-25
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	3e-24
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	1e-10
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	3e-48
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	1e-47
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	5e-45
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	4e-43
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	8e-25
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	8e-16
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	6e-05
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	5e-48
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	7e-39
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	2e-34
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	3e-31
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	1e-23
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	3e-47
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	8e-46
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	1e-43
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	4e-43
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	1e-40
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	3e-34
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	4e-31
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	2e-30
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	1e-08
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	6e-46
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	1e-44
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	5e-43
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	8e-39
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	1e-37
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	2e-36
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	1e-26
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	2e-20
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	1e-10
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	2e-09
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	8e-04
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	2e-45
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	1e-43
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	2e-43
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	8e-42
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	6e-37
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	2e-34
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	6e-31
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	3e-19
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	8e-08
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	3e-43
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	5e-41
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	7e-36
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	9e-36
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	2e-34
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	3e-34
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	6e-08
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	6e-43
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	7e-39
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	3e-32
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	2e-31
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	1e-23
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	2e-09
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	3e-42
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	9e-42
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	1e-36
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	1e-35
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	2e-32
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	1e-30
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	1e-08
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	9e-42
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	7e-41
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	9e-38
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	3e-37
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	2e-28
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	5e-22
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	2e-13
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	2e-09
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	1e-41
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	8e-41
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	3e-40
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	9e-39
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	1e-33
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	3e-31
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	2e-15
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	6e-13
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	2e-38
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	3e-38
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	1e-36
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	2e-33
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	5e-33
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	4e-30
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	1e-24
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	3e-20
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	2e-08
2pnn_A	273	Transient receptor potential cation channel subfa	1e-37
2pnn_A	273	Transient receptor potential cation channel subfa	2e-27
2pnn_A	273	Transient receptor potential cation channel subfa	6e-27
2pnn_A	273	Transient receptor potential cation channel subfa	1e-24
2pnn_A	273	Transient receptor potential cation channel subfa	4e-20
2pnn_A	273	Transient receptor potential cation channel subfa	2e-15
2rfa_A	232	Transient receptor potential cation channel subfa	1e-36
2rfa_A	232	Transient receptor potential cation channel subfa	1e-36
2rfa_A	232	Transient receptor potential cation channel subfa	5e-30
2rfa_A	232	Transient receptor potential cation channel subfa	8e-29
2rfa_A	232	Transient receptor potential cation channel subfa	7e-28
2rfa_A	232	Transient receptor potential cation channel subfa	4e-20
2rfa_A	232	Transient receptor potential cation channel subfa	5e-07
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	6e-35
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	1e-33
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	4e-33
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	9e-31
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	1e-30
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	9e-29
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	6e-21
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	3e-19
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	9e-12
2etb_A	256	Transient receptor potential cation channel subfam	2e-34
2etb_A	256	Transient receptor potential cation channel subfam	4e-28
2etb_A	256	Transient receptor potential cation channel subfam	3e-27
2etb_A	256	Transient receptor potential cation channel subfam	1e-20
2etb_A	256	Transient receptor potential cation channel subfam	4e-16
2etb_A	256	Transient receptor potential cation channel subfam	3e-14
3hra_A	201	Ankyrin repeat family protein; structural protein;	3e-34
3hra_A	201	Ankyrin repeat family protein; structural protein;	1e-32
3hra_A	201	Ankyrin repeat family protein; structural protein;	5e-31
3hra_A	201	Ankyrin repeat family protein; structural protein;	1e-29
3hra_A	201	Ankyrin repeat family protein; structural protein;	2e-23
3hra_A	201	Ankyrin repeat family protein; structural protein;	8e-17
3hra_A	201	Ankyrin repeat family protein; structural protein;	2e-15
3hra_A	201	Ankyrin repeat family protein; structural protein;	1e-04
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	2e-33
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	2e-31
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	2e-31
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	2e-30
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	5e-28
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	7e-28
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	1e-19
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	8e-10
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	3e-33
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	3e-33
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	8e-32
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	5e-28
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	2e-23
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	6e-23
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	5e-06
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	2e-32
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	1e-24
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	5e-23
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	2e-19
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	4e-17
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	1e-05
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	7e-32
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	2e-29
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	3e-29
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	2e-27
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	5e-26
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	4e-25
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	9e-25
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	3e-21
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	6e-18
3v30_A	172	DNA-binding protein rfxank; structural genomics co	2e-31
3v30_A	172	DNA-binding protein rfxank; structural genomics co	2e-31
3v30_A	172	DNA-binding protein rfxank; structural genomics co	1e-30
3v30_A	172	DNA-binding protein rfxank; structural genomics co	2e-30
3v30_A	172	DNA-binding protein rfxank; structural genomics co	2e-28
3v30_A	172	DNA-binding protein rfxank; structural genomics co	2e-28
3v30_A	172	DNA-binding protein rfxank; structural genomics co	4e-28
3v30_A	172	DNA-binding protein rfxank; structural genomics co	1e-19
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	2e-31
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	3e-30
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	1e-27
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	4e-27
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	1e-24
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	2e-24
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	3e-22
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	4e-18
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	2e-31
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	2e-28
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	5e-26
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	6e-25
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	8e-24
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	3e-23
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	3e-21
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	3e-31
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	5e-30
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	8e-30
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	3e-28
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	7e-28
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	5e-27
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	2e-26
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	9e-25
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	1e-20
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	7e-17
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	5e-05
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	3e-31
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	2e-28
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	2e-25
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	2e-24
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	9e-24
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	2e-19
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	2e-16
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	5e-16
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	1e-12
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	6e-31
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	5e-30
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	1e-28
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	1e-27
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	5e-27
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	7e-25
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	1e-24
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	6e-23
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	3e-17
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	8e-14
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	3e-05
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	5e-30
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	6e-26
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	3e-25
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	1e-23
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	2e-21
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	2e-19
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	5e-19
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	8e-16
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	7e-10
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	3e-29
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	4e-29
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	2e-27
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	1e-24
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	1e-23
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	2e-23
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	4e-23
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	3e-21
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	7e-19
3jxi_A	260	Vanilloid receptor-related osmotically activated p	1e-28
3jxi_A	260	Vanilloid receptor-related osmotically activated p	7e-20
3jxi_A	260	Vanilloid receptor-related osmotically activated p	2e-19
3jxi_A	260	Vanilloid receptor-related osmotically activated p	9e-19
3jxi_A	260	Vanilloid receptor-related osmotically activated p	2e-16
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	2e-28
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	5e-28
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	3e-27
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	2e-26
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	3e-23
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	3e-21
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	2e-20
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	5e-18
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	2e-14
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	3e-28
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	3e-28
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	2e-27
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	3e-27
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	1e-24
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	2e-24
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	4e-24
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	8e-22
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	1e-20
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	8e-15
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	2e-04
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	2e-27
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	7e-26
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	1e-24
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	2e-12
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	2e-11
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	6e-06
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	1e-26
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	5e-26
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	2e-25
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	8e-25
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	1e-22
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	5e-22
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	5e-22
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	7e-17
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	4e-26
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	1e-25
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	1e-24
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	3e-24
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	5e-21
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	1e-19
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	2e-19
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	5e-18
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	4e-17
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	4e-11
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	2e-08
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	1e-25
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	4e-25
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	7e-25
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	1e-23
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	2e-20
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	2e-19
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	4e-17
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	1e-11
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	4e-08
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	4e-05
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	2e-25
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	7e-24
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	1e-22
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	2e-22
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	2e-20
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	1e-19
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	2e-19
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	6e-19
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	5e-18
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	2e-15
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	2e-11
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	5e-25
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	4e-23
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	6e-22
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	9e-22
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	2e-20
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	1e-18
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	2e-17
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	3e-17
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	3e-17
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	9e-13
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	2e-05
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	5e-24
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	8e-21
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	8e-21
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	1e-20
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	5e-20
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	5e-15
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	2e-09
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	3e-23
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	5e-19
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	7e-19
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	3e-18
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	7e-18
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	6e-17
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	1e-16
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	2e-15
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	6e-12
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	5e-10
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	6e-05
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	2e-22
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	7e-22
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	3e-21
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	5e-20
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	1e-19
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	1e-17
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	5e-17
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	6e-16
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	6e-13
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	9e-13
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	7e-06
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	8e-19
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	1e-16
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	1e-15
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	1e-15
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	4e-15
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	3e-14
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	4e-13
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	1e-12
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	5e-12
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	1e-18
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	3e-18
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	4e-18
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	2e-16
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	5e-16
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	1e-15
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	8e-15
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	7e-13
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	5e-12
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	3e-11
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	9e-09
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	5e-05
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	9e-14
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	1e-13
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	6e-09
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	1e-08
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	3e-08
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	1e-07
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	2e-07
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	7e-12
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	8e-11
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	3e-08
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	2e-07
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	9e-06
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	2e-04
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	9e-11
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	1e-09
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	1e-09
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	6e-09
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	3e-08
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	3e-04
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	1e-09
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	4e-09
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	4e-08
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	6e-05
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	8e-05
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	3e-04

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  277 bits (712), Expect = 7e-88
 Identities = 130/507 (25%), Positives = 195/507 (38%), Gaps = 104/507 (20%)

Query: 60  GAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVV 119
           G       + G TP+H A+  G+L  ++ LL+ G  P   N   ETPLH+A+R    EV 
Sbjct: 4   GISGGGGGESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVA 63

Query: 120 DLLIQFVQNISQEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEAG 179
             L+Q             VN+  +D  + LH A +                 VKLLLE  
Sbjct: 64  KYLLQ--NKAK-------VNAKAKDDQTPLHCAAR-----------IGHTNMVKLLLENN 103

Query: 180 ADVSLQTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIACNR 239
           A+ +L T     T  H  A  G+ + +  +LE+             T  G+TPL +A   
Sbjct: 104 ANPNLATT-AGHTPLHIAAREGHVETVLALLEK--EASQ----ACMTKKGFTPLHVAAKY 156

Query: 240 GHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVSSGKSLKHSVMSFRLPPHNIIP 299
           G + +   +L   A  +   + G + LH+A  H  L +                      
Sbjct: 157 GKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVK-------------------- 196

Query: 300 NGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAA 359
              L+               TPLH+AA+  Q++V + LL  G S +A   QG  P+H+AA
Sbjct: 197 --LLL-PRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAA 253

Query: 360 QNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRV 419
           Q    E+  + L +  +      K G T                                
Sbjct: 254 QEGHAEMVALLL-SKQANGNLGNKSGLT-------------------------------- 280

Query: 420 TEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKAL 479
               PL L A+ GH  V  VL+K G       + G+T +H+A+  G+ ++++ +   +A 
Sbjct: 281 ----PLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQA- 335

Query: 480 NVYSK-KLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLH 538
           +V +K KLG + LH AA  G  D V  LL +           GAS      S  G TPL 
Sbjct: 336 DVNAKTKLGYSPLHQAAQQGHTDIVTLLLKN-----------GASP--NEVSSDGTTPLA 382

Query: 539 LAAYSGNENVVRLLLN--SAGVQVDAQ 563
           +A   G  +V  +L         V   
Sbjct: 383 IAKRLGYISVTDVLKVVTDETSFVLVS 409

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  267 bits (684), Expect = 7e-84
 Identities = 114/458 (24%), Positives = 200/458 (43%), Gaps = 68/458 (14%)

Query: 56  LLKSGAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCK 115
           LL+ GA PN++    +TP+H AA+ G+    + LL++      K K  +TPLH A+R   
Sbjct: 33  LLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGH 92

Query: 116 AEVVDLLIQFVQNISQEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLL 175
             +V LL++   N          N     G + LH A +           +   +TV  L
Sbjct: 93  TNMVKLLLENNANP---------NLATTAGHTPLHIAAR-----------EGHVETVLAL 132

Query: 176 LEAGADVSLQTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLI 235
           LE  A  +  TK    T  H  A  G   V   +LE+          N     G TPL +
Sbjct: 133 LEKEASQACMTK-KGFTPLHVAAKYGKVRVAELLLER--DAHP----NAAGKNGLTPLHV 185

Query: 236 ACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVSSGKSLKHSVMSFRLPPH 295
           A +  ++++V  +L            G + LH+AA+   ++V+                 
Sbjct: 186 AVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVAR---------------- 229

Query: 296 NIIPNGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPI 355
                  L+  +    +  +++  TPLHLAA+ G  ++  LLL   A+ +  +  G  P+
Sbjct: 230 ------SLL-QYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPL 282

Query: 356 HVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGV-IS 414
           H+ AQ     VA + ++     V ATT+ G T  H+A+  G++ +++ L++       ++
Sbjct: 283 HLVAQEGHVPVADVLIKHGVM-VDATTRMGYTPLHVASHYGNIKLVKFLLQ---HQADVN 338

Query: 415 ARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLE--E 472
           A+ +    +PL  AA+ GH ++V +L+K GAS  + +  G T + +A + G+  V +  +
Sbjct: 339 AKTK-LGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYISVTDVLK 397

Query: 473 MRSSKALNVYSK-KLGVTALHVAAYFGQADTVRELLSH 509
           + + +   V    K  ++            TV E+L  
Sbjct: 398 VVTDETSFVLVSDKHRMSFPE---------TVDEILDV 426

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  225 bits (575), Expect = 8e-68
 Identities = 100/392 (25%), Positives = 160/392 (40%), Gaps = 62/392 (15%)

Query: 11  ETPLHIAARVKDGDRCALMLLKSGAGPNLTN--------IAARVKDGDRCALMLLKSGAG 62
           +TPLH AAR         +LL++ A PNL          IAAR    +   L LL+  A 
Sbjct: 81  QTPLHCAAR-IGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVE-TVLALLEKEAS 138

Query: 63  PNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVVDLL 122
               T  G TP+H AAKYG +   +LLLE    P    K G TPLH+A  +   ++V LL
Sbjct: 139 QACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLL 198

Query: 123 IQFVQNISQEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGADV 182
           +   +  S        +S   +G + LH A +           +   +  + LL+ G   
Sbjct: 199 LP--RGGS-------PHSPAWNGYTPLHIAAK-----------QNQVEVARSLLQYGGSA 238

Query: 183 SLQTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIACNRGHM 242
           + ++ Q   T  H  A  G+ +++  +L +          N     G TPL +    GH+
Sbjct: 239 NAESVQG-VTPLHLAAQEGHAEMVALLLSK--QANG----NLGNKSGLTPLHLVAQEGHV 291

Query: 243 ELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVSSGKSLKHSVMSFRLPPHNIIPNGF 302
            + + ++ +   VD   + G + LH+A+ +G +K+                        F
Sbjct: 292 PVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVK----------------------F 329

Query: 303 LVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNN 362
           L+  H A ++  T    +PLH AA+ G   +  LLL  GAS +     G  P+ +A +  
Sbjct: 330 LL-QHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLG 388

Query: 363 FPEVAQIFLR--AHPSLVTATTKDGNTCAHIA 392
           +  V  +        S V  + K   +     
Sbjct: 389 YISVTDVLKVVTDETSFVLVSDKHRMSFPETV 420

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  222 bits (569), Expect = 7e-67
 Identities = 100/346 (28%), Positives = 155/346 (44%), Gaps = 45/346 (13%)

Query: 223 NKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVSSGKS 282
                 G TPL +A   GH+ +V  +L   A  +V + +  + LH+AA  G+ +V+    
Sbjct: 8   GGGGESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAK--- 64

Query: 283 LKHSVMSFRLPPHNIIPNGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGA 342
                              +L+  + A ++      QTPLH AA  G   + KLLL+  A
Sbjct: 65  -------------------YLL-QNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNA 104

Query: 343 SIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIE 402
           + +     G  P+H+AA+    E     L    S     TK G T  H+AA  G V V E
Sbjct: 105 NPNLATTAGHTPLHIAAREGHVETVLALLEKEAS-QACMTKKGFTPLHVAAKYGKVRVAE 163

Query: 403 ELMKFDRSGV-ISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLA 461
            L++        +A  +    TPL +A    + ++V++L+  G S       G+T +H+A
Sbjct: 164 LLLE---RDAHPNAAGK-NGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIA 219

Query: 462 AQNGHNQVLEEMRSSKALNVYSK-KLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPT 520
           A+    +V   +      +  ++   GVT LH+AA  G A+ V  LLS            
Sbjct: 220 AKQNQVEVARSLLQYGG-SANAESVQGVTPLHLAAQEGHAEMVALLLSK----------- 267

Query: 521 GASFLGELGSESGMTPLHLAAYSGNENVVRLLLNSAGVQVDAQTQE 566
            A+    LG++SG+TPLHL A  G+  V  +L+   GV VDA T+ 
Sbjct: 268 QANG--NLGNKSGLTPLHLVAQEGHVPVADVLI-KHGVMVDATTRM 310

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  192 bits (490), Expect = 2e-55
 Identities = 80/316 (25%), Positives = 133/316 (42%), Gaps = 45/316 (14%)

Query: 253 ARVDVFDQEGRSALHLAAEHGYLKVSSGKSLKHSVMSFRLPPHNIIPNGFLVHDHAAVID 312
                  + G + LH+A+  G+L +                         L+    A  +
Sbjct: 5   ISGGGGGESGLTPLHVASFMGHLPIVK----------------------NLL-QRGASPN 41

Query: 313 ILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLR 372
           +  ++ +TPLH+AA AG  +V K LL   A ++A     Q P+H AA+     + ++ L 
Sbjct: 42  VSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLL- 100

Query: 373 AHPSLVTATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGV-ISARNRVTEATPLQLAAEG 431
            + +     T  G+T  HIAA +G V  +  L++        +   +    TPL +AA+ 
Sbjct: 101 ENNANPNLATTAGHTPLHIAAREGHVETVLALLE---KEASQACMTK-KGFTPLHVAAKY 156

Query: 432 GHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSK-KLGVTA 490
           G   V  +L++  A      K G T +H+A  + +  +++ +      + +S    G T 
Sbjct: 157 GKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGG-SPHSPAWNGYTP 215

Query: 491 LHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVR 550
           LH+AA   Q +  R LL +           G S      S  G+TPLHLAA  G+  +V 
Sbjct: 216 LHIAAKQNQVEVARSLLQY-----------GGSA--NAESVQGVTPLHLAAQEGHAEMVA 262

Query: 551 LLLNSAGVQVDAQTQE 566
           LLL S     +   + 
Sbjct: 263 LLL-SKQANGNLGNKS 277

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  179 bits (456), Expect = 1e-50
 Identities = 79/262 (30%), Positives = 119/262 (45%), Gaps = 22/262 (8%)

Query: 307 HAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEV 366
                        TPLH+A+  G L + K LL  GAS + ++ + + P+H+AA+    EV
Sbjct: 3   PGISGGGGGESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEV 62

Query: 367 AQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGV-ISARNRVTEATPL 425
           A+  L+     V A  KD  T  H AA  G   +++ L++   +    +        TPL
Sbjct: 63  AKYLLQNKAK-VNAKAKDDQTPLHCAARIGHTNMVKLLLE---NNANPNLATT-AGHTPL 117

Query: 426 QLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSK- 484
            +AA  GH   V  L++  AS     K GFT +H+AA+ G  +V E +    A +  +  
Sbjct: 118 HIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDA-HPNAAG 176

Query: 485 KLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSG 544
           K G+T LHVA +    D V+ LL             G S      + +G TPLH+AA   
Sbjct: 177 KNGLTPLHVAVHHNNLDIVKLLLPR-----------GGSP--HSPAWNGYTPLHIAAKQN 223

Query: 545 NENVVRLLLNSAGVQVDAQTQE 566
              V R LL   G   +A++ +
Sbjct: 224 QVEVARSLL-QYGGSANAESVQ 244

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  150 bits (382), Expect = 3e-40
 Identities = 76/291 (26%), Positives = 121/291 (41%), Gaps = 44/291 (15%)

Query: 11  ETPLHIAARVKDGDRCALMLLKSGAGPNLTN--------IAARVKDGDRCALMLLKSGAG 62
            TPLH+A    +      +LL  G  P+           IAA+ ++    A  LL+ G  
Sbjct: 180 LTPLHVAVH-HNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAK-QNQVEVARSLLQYGGS 237

Query: 63  PNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVVDLL 122
            N  +  G TP+H AA+ G+   + LLL    +    NK G TPLHL ++     V D+L
Sbjct: 238 ANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVL 297

Query: 123 IQFVQNISQEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGADV 182
           I+    +         ++    G + LH A               + K VK LL+  ADV
Sbjct: 298 IKHGVMV---------DATTRMGYTPLHVASH-----------YGNIKLVKFLLQHQADV 337

Query: 183 SLQTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIACNRGHM 242
           + +TK    +  H  A  G+ D++T +L+   G       N+ +S G TPL IA   G++
Sbjct: 338 NAKTK-LGYSPLHQAAQQGHTDIVTLLLKN--GASP----NEVSSDGTTPLAIAKRLGYI 390

Query: 243 ELV---NTMLNNHARVDVFDQEGRSALHLAAEHGYLKVSSGKSLKHSVMSF 290
            +      + +  + V V D+   S      E     +   +     ++SF
Sbjct: 391 SVTDVLKVVTDETSFVLVSDKHRMSFPETVDEI----LDVSEDEGEELISF 437

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  216 bits (553), Expect = 2e-65
 Identities = 62/445 (13%), Positives = 126/445 (28%), Gaps = 91/445 (20%)

Query: 55  MLLKSGAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNC 114
           M          + D+    +H AA+ G    ++ L+E G  P  +N+ G T LHLA +  
Sbjct: 5   MTDFPKLNRIKSDDENMEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFG 64

Query: 115 KAEVVDLLIQFVQNISQEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKL 174
             +    L    +  S              G   +H A    K +            V  
Sbjct: 65  CVDTAKYLASVGEVHS-----------LWHGQKPIHLAVMANKTD-----------LVVA 102

Query: 175 LLEAGADVSLQTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLL 234
           L+E   +         +            +V           EI    + +   G T L 
Sbjct: 103 LVEGAKE-------RGQMPESLLNECDEREV----------NEIG--SHVKHCKGQTALH 143

Query: 235 IACNRG--HMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVSSGKSLKHSVMSFRL 292
                G  ++E++  ++   A     D+   + L  A E    +      +         
Sbjct: 144 WCVGLGPEYLEMIKILVQLGASPTAKDKADETPLMRAMEFRNREAL--DLM--------- 192

Query: 293 PPHNIIPNGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQ 352
                +         +  +D    +  + LH A       V    +++G  ++  D++  
Sbjct: 193 -----MDTV--PSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGIDVNMEDNEHT 245

Query: 353 KPIHVAAQNNFPEVAQIFL--RAHPSLVTATTKDGNTCAHIAAMQGSVGVIEELMKFDRS 410
            P++++ +     + +  L       +      +G T                       
Sbjct: 246 VPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLP-------------------- 285

Query: 411 GVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVL 470
                 +RV     +  AA+     V+++L +          TG        +     V 
Sbjct: 286 ------DRVVWLDFVPAAADPSKQEVLQLLQEKLDEVVRSLNTGAGGAVKRKKKAAPAVK 339

Query: 471 EEMRSSKA-LNVYSKKLGVTALHVA 494
               +  A +   S+     +  V+
Sbjct: 340 RMKLAPSAPVRTRSRS-RARSSAVS 363

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  202 bits (516), Expect = 5e-60
 Identities = 59/397 (14%), Positives = 129/397 (32%), Gaps = 69/397 (17%)

Query: 11  ETPLHIAARVKDGDRCALMLLKSGAGPNLTNIAARVKDGDRCALMLLKSGAGPNLTTDDG 70
              +H+AAR                    T+              L+++G  P +    G
Sbjct: 21  MEKIHVAARK-----------------GQTDEVR----------RLIETGVSPTIQNRFG 53

Query: 71  QTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVVDLLIQF----- 125
            T +H A K+G + T + L   G      +  G+ P+HLA    K ++V  L++      
Sbjct: 54  CTALHLACKFGCVDTAKYLASVGEVHSLWH--GQKPIHLAVMANKTDLVVALVEGAKERG 111

Query: 126 -------VQNISQEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEA 178
                   +   +E      +  +  G +ALH+   +    L         + +K+L++ 
Sbjct: 112 QMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYL---------EMIKILVQL 162

Query: 179 GADVSLQTKQNHETAFHYCAVAGNNDV---LTGMLEQMSGTEISKALNKQTSIGWTPLLI 235
           GA  + + K   ET         N +    +   +   S   +    +     G + L  
Sbjct: 163 GASPTAKDK-ADETPLMRAMEFRNREALDLMMDTVPSKSSLRL----DYANKQGNSHLHW 217

Query: 236 ACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVSSGKSLKHSVMSFRLPPH 295
           A      ++    +     V++ D E    L+L+     +           +    L   
Sbjct: 218 AILINWEDVAMRFVEMGIDVNMEDNEHTVPLYLSVRAAMVL----------LTKELLQKT 267

Query: 296 NIIPNGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPI 355
           ++       + +   +    +     +  AA+  + +V +LL +    +  + + G    
Sbjct: 268 DVFLIQACPYHNGTTVLPDRVVWLDFVPAAADPSKQEVLQLLQEKLDEVVRSLNTGAGGA 327

Query: 356 HVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIA 392
               +   P V +    A  + V   ++     + ++
Sbjct: 328 VKRKKKAAPAVKR-MKLAPSAPVRTRSRSRARSSAVS 363

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  193 bits (492), Expect = 1e-56
 Identities = 62/446 (13%), Positives = 114/446 (25%), Gaps = 124/446 (27%)

Query: 138 VNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGADVSLQTKQNHETAFHYC 197
               +++    +H A +           K     V+ L+E G   ++Q +    TA H  
Sbjct: 13  RIKSDDENMEKIHVAAR-----------KGQTDEVRRLIETGVSPTIQNR-FGCTALHLA 60

Query: 198 AVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDV 257
              G  D     L        S         G  P+ +A      +LV  ++        
Sbjct: 61  CKFGCVDT-AKYL-------ASVGEVHSLWHGQKPIHLAVMANKTDLVVALVEGAKER-- 110

Query: 258 FDQEGRSALHLAAEHGYLKVSSGKSLKHSVMSFRLPPHNIIPNGFLVHDHAAVIDILTLR 317
               G+    L  E    +V                             +     +   +
Sbjct: 111 ----GQMPESLLNECDEREV-----------------------------NEIGSHVKHCK 137

Query: 318 KQTPLHLAAEAGQ--LQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHP 375
            QT LH     G   L++ K+L+ LGAS  A D   + P+  A +    E   + +   P
Sbjct: 138 GQTALHWCVGLGPEYLEMIKILVQLGASPTAKDKADETPLMRAMEFRNREALDLMMDTVP 197

Query: 376 SL----VTATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEG 431
           S     +    K GN+                                     L  A   
Sbjct: 198 SKSSLRLDYANKQGNS------------------------------------HLHWAILI 221

Query: 432 GHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLE------------EMRSSKAL 479
              +V    V+ G     E+      ++L+ +     + +                    
Sbjct: 222 NWEDVAMRFVEMGIDVNMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGT 281

Query: 480 NVYSK-KLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLH 538
            V     + +  +  AA   + + ++ L                         +G     
Sbjct: 282 TVLPDRVVWLDFVPAAADPSKQEVLQLLQEK-----------LDEV--VRSLNTGAGGAV 328

Query: 539 LAAYSGNENVVRLLLNSAGVQVDAQT 564
                    V R+ L +    V  ++
Sbjct: 329 KRKKKAAPAVKRMKL-APSAPVRTRS 353

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  170 bits (433), Expect = 4e-48
 Identities = 57/328 (17%), Positives = 103/328 (31%), Gaps = 63/328 (19%)

Query: 249 LNNHARVDV--FDQEGRSALHLAAEHGYLKVSSGKSLKHSVMSFRLPPHNIIPNGFLVHD 306
           + +  +++    D E    +H+AA  G                             L+ +
Sbjct: 5   MTDFPKLNRIKSDDENMEKIHVAARKGQTDEVR----------------------RLI-E 41

Query: 307 HAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEV 366
                 I      T LHLA + G +   K L  +G         GQKPIH+A   N  ++
Sbjct: 42  TGVSPTIQNRFGCTALHLACKFGCVDTAKYLASVGEVHSLWH--GQKPIHLAVMANKTDL 99

Query: 367 AQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQ 426
                     LV    + G     +        V E             ++     T L 
Sbjct: 100 VVA-------LVEGAKERGQMPESLLNECDEREVNEIG--------SHVKHC-KGQTALH 143

Query: 427 LAAEGG--HANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQV----LEEMRSSKALN 480
                G  +  ++++LV+ GAS T ++K   T +  A +  + +     ++ + S  +L 
Sbjct: 144 WCVGLGPEYLEMIKILVQLGASPTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLR 203

Query: 481 VYSK-KLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHL 539
           +    K G + LH A      D     +             G      +       PL+L
Sbjct: 204 LDYANKQGNSHLHWAILINWEDVAMRFVEM-----------GIDV--NMEDNEHTVPLYL 250

Query: 540 AAYSGNENVVRLLLNSAGVQVDAQTQEN 567
           +  +    + + LL    V +      +
Sbjct: 251 SVRAAMVLLTKELLQKTDVFLIQACPYH 278

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  151 bits (385), Expect = 3e-41
 Identities = 44/267 (16%), Positives = 86/267 (32%), Gaps = 31/267 (11%)

Query: 301 GFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQ 360
           G +                  +H+AA  GQ    + L++ G S    +  G   +H+A +
Sbjct: 3   GSMTDFPKLNRIKSDDENMEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACK 62

Query: 361 NNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVT 420
               + A+        + +     G    H+A M     ++  L        +       
Sbjct: 63  FGCVDTAKYLAS-VGEVHSL--WHGQKPIHLAVMANKTDLVVAL--------VEGAKER- 110

Query: 421 EATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHN--QVLEEMRSSKA 478
              P  L  E     V  +          ++  G TA+H     G    ++++ +    A
Sbjct: 111 GQMPESLLNECDEREVNEIGSHV------KHCKGQTALHWCVGLGPEYLEMIKILVQLGA 164

Query: 479 LNVYSK-KLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPL 537
            +  +K K   T L  A  F   + +  ++  VP               +  ++ G + L
Sbjct: 165 -SPTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRL--------DYANKQGNSHL 215

Query: 538 HLAAYSGNENVVRLLLNSAGVQVDAQT 564
           H A     E+V    +   G+ V+ + 
Sbjct: 216 HWAILINWEDVAMRFV-EMGIDVNMED 241

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 55.3 bits (134), Expect = 2e-08
 Identities = 6/103 (5%), Positives = 19/103 (18%), Gaps = 27/103 (26%)

Query: 8   KLRETPLHIAARVKDGDRCALMLLKSGAGPNLTNIAARVKDGDRCALMLLKSGAGPNLTT 67
            +    +  AA                                    +L +       + 
Sbjct: 288 VVWLDFVPAAAD---------------------------PSKQEVLQLLQEKLDEVVRSL 320

Query: 68  DDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLA 110
           + G        K       ++ L        +++       ++
Sbjct: 321 NTGAGGAVKRKKKAAPAVKRMKLAPSAPVRTRSRSRARSSAVS 363

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  197 bits (504), Expect = 2e-58
 Identities = 94/504 (18%), Positives = 158/504 (31%), Gaps = 159/504 (31%)

Query: 47  KDGDRCALMLLKSGAGPNLTTDDGQTPVHAAAKYGNL-VTLQLLLEDGGDPMYKNKIGET 105
           + G + AL L    A   LT +  +  +  AA+ GN    + LL     +    +    T
Sbjct: 2   EFG-KSALDLADPSAKAVLTGEYKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKST 60

Query: 106 PLHLASRNCKAEVVDLLIQFVQNISQEKVLEYVNSVNEDGASALHYACQVTKAELIPITS 165
           PLHLA+   +  +V LL+Q   ++         ++ ++ G   LH AC            
Sbjct: 61  PLHLAAGYNRVRIVQLLLQHGADV---------HAKDKGGLVPLHNACS----------- 100

Query: 166 KEDQKTVKLLLEAGADVSLQTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQ 225
               +  +LLL+ GA V                                        N  
Sbjct: 101 YGHYEVTELLLKHGACV----------------------------------------NAM 120

Query: 226 TSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVSSGKSLKH 285
               +TPL  A ++  +E+ + +L++ A   + +  G+SA+ +A                
Sbjct: 121 DLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPE------------ 168

Query: 286 SVMSFRLPPHNIIPNGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASID 345
                                    +     +  + L  A E   L   K  L L     
Sbjct: 169 ---------------------LRERLTYE-FKGHSLLQAARE-ADLAKVKKTLALEIINF 205

Query: 346 ATDDQGQKPIHVAAQN---NFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIE 402
                 +  +H A  +      +VA++ LR   + V    KD  T               
Sbjct: 206 KQPQSHETALHCAVASLHPKRKQVAELLLR-KGANVNEKNKDFMT--------------- 249

Query: 403 ELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAA 462
                                PL +AAE  H +V+ VL K GA     +  G TA+H AA
Sbjct: 250 ---------------------PLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAA 288

Query: 463 QNGHNQVLEEMRSSKALNVYSK-KLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTG 521
             GH Q    + S  + +       G TA  +       + V+++LS             
Sbjct: 289 LAGHLQTCRLLLSYGS-DPSIISLQGFTAAQMG-----NEAVQQILSE-----------S 331

Query: 522 ASFLGELGSESGMTPLHLAAYSGN 545
                 + +      L  A+ +G+
Sbjct: 332 T----PMRTSDVDYRLLEASKAGD 351

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  196 bits (500), Expect = 6e-58
 Identities = 90/420 (21%), Positives = 144/420 (34%), Gaps = 79/420 (18%)

Query: 21  KDGDRCALMLLKSGAGPNLTN--------IAARVKDGDRCALMLLKSGAGPNLTTDDGQT 72
           + G + AL L    A   LT          AAR  + ++   +L       + +     T
Sbjct: 2   EFG-KSALDLADPSAKAVLTGEYKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKST 60

Query: 73  PVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVVDLLIQFVQNISQE 132
           P+H AA Y  +  +QLLL+ G D   K+K G  PLH A      EV +LL++        
Sbjct: 61  PLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLK--HGAC-- 116

Query: 133 KVLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGADVSLQTKQNHET 192
                VN+++    + LH A             K   +   LLL  GAD +L    + ++
Sbjct: 117 -----VNAMDLWQFTPLHEAAS-----------KNRVEVCSLLLSHGADPTLVNC-HGKS 159

Query: 193 AFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIACNRGHMELVNTMLNNH 252
           A                       E      K    G + L  A     +  V   L   
Sbjct: 160 AVDMAPTPEL-------------RERLTYEFK----GHSLLQAARE-ADLAKVKKTLALE 201

Query: 253 ARVDVFDQEGRSALHLAAEHGYLKVSSGKSLKHSVMSFRLPPHNIIPNGFLVHDHAAVID 312
                  Q   +ALH A    + K       +  V               L+    A ++
Sbjct: 202 IINFKQPQSHETALHCAVASLHPK-------RKQVAEL------------LL-RKGANVN 241

Query: 313 ILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLR 372
                  TPLH+AAE     V ++L   GA ++A D  GQ  +H AA     +  ++ L 
Sbjct: 242 EKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLL- 300

Query: 373 AHPSLVTATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGG 432
           ++ S  +  +  G T A +         +++++                   L  A++ G
Sbjct: 301 SYGSDPSIISLQGFTAAQMGNE-----AVQQILS---ESTPM--RTSDVDYRLLEASKAG 350

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  186 bits (474), Expect = 5e-54
 Identities = 85/403 (21%), Positives = 132/403 (32%), Gaps = 95/403 (23%)

Query: 167 EDQKTVKLLLEAGADVSLQTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQT 226
           E  K+   L +  A   L  +   +      A +GN + L  +L            +   
Sbjct: 2   EFGKSALDLADPSAKAVLTGE-YKKDELLEAARSGNEEKLMALLTP-LNVNC----HASD 55

Query: 227 SIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVSSGKSLKHS 286
               TPL +A     + +V  +L + A V   D+ G   LH A  +G+ +V+        
Sbjct: 56  GRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTE------- 108

Query: 287 VMSFRLPPHNIIPNGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDA 346
                           L+  H A ++ + L + TPLH AA   +++VC LLL  GA    
Sbjct: 109 ---------------LLL-KHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTL 152

Query: 347 TDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIEELMK 406
            +  G+  + +A      E      + H                                
Sbjct: 153 VNCHGKSAVDMAPTPELRERLTYEFKGH-------------------------------- 180

Query: 407 FDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGH 466
                           + LQ A E      V+  +        + ++  TA+H A  + H
Sbjct: 181 ----------------SLLQAAREA-DLAKVKKTLALEIINFKQPQSHETALHCAVASLH 223

Query: 467 NQVLEEMRS--SKALNVYSK-KLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGAS 523
            +  +       K  NV  K K  +T LHVAA     D +  L  H           GA 
Sbjct: 224 PKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKH-----------GAK 272

Query: 524 FLGELGSESGMTPLHLAAYSGNENVVRLLLNSAGVQVDAQTQE 566
                    G T LH AA +G+    RLLL S G      + +
Sbjct: 273 M--NALDSLGQTALHRAALAGHLQTCRLLL-SYGSDPSIISLQ 312

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 99.9 bits (250), Expect = 4e-23
 Identities = 33/200 (16%), Positives = 61/200 (30%), Gaps = 38/200 (19%)

Query: 12  TPLHIAARVKDGDRCALMLLKSGAGPNLTN-------IAARVKDGDR--CALMLLKSGAG 62
           + L  A    D  +    L                   A       R   A +LL+ GA 
Sbjct: 181 SLLQAARE-ADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGAN 239

Query: 63  PNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVVDLL 122
            N    D  TP+H AA+  +   +++L + G      + +G+T LH A+     +   LL
Sbjct: 240 VNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLL 299

Query: 123 IQFVQNISQEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGADV 182
           +               + ++  G +A     +                 V+ +L     +
Sbjct: 300 LS--YGSD-------PSIISLQGFTAAQMGNEA----------------VQQILSESTPM 334

Query: 183 SLQTKQNHETAFHYCAVAGN 202
                   +      + AG+
Sbjct: 335 RTSDV---DYRLLEASKAGD 351

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 71.4 bits (176), Expect = 1e-13
 Identities = 34/144 (23%), Positives = 47/144 (32%), Gaps = 43/144 (29%)

Query: 11  ETPLHIAARVKDGDRCALMLLKSGAGPNLTNIAARVKDGDRCALMLLKSGAGPNLTTDDG 70
            TPLH+AA     D   +                           L K GA  N     G
Sbjct: 248 MTPLHVAAERAHNDVMEV---------------------------LHKHGAKMNALDSLG 280

Query: 71  QTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVVDLLIQFVQNIS 130
           QT +H AA  G+L T +LLL  G DP   +  G T   +       E V  ++     + 
Sbjct: 281 QTALHRAALAGHLQTCRLLLSYGSDPSIISLQGFTAAQMG-----NEAVQQILSESTPM- 334

Query: 131 QEKVLEYVNSVNEDGASALHYACQ 154
                    + + D    L  A +
Sbjct: 335 --------RTSDVDY--RLLEASK 348

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 43.3 bits (103), Expect = 2e-04
 Identities = 16/103 (15%), Positives = 29/103 (28%), Gaps = 34/103 (33%)

Query: 11  ETPLHIAARVKDGDRCALMLLKSGAGPNLTNIAARVKDGDRCALMLLKSGAGPNLTTDDG 70
           +T LH AA                                    +LL  G+ P++ +  G
Sbjct: 281 QTALHRAALAGHLQ---------------------------TCRLLLSYGSDPSIISLQG 313

Query: 71  QTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRN 113
            T      +      +Q +L +       +   +  L  AS+ 
Sbjct: 314 FTAAQMGNE-----AVQQILSESTPMRTSDV--DYRLLEASKA 349

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  181 bits (462), Expect = 4e-53
 Identities = 66/350 (18%), Positives = 111/350 (31%), Gaps = 76/350 (21%)

Query: 64  NLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMY---KNKIGETPLHLASRNCKAEVVD 120
              T+DG T +H A  + +   L  LL       Y   +N +G+T LHLA+   +A  V+
Sbjct: 3   GYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVE 62

Query: 121 LLIQFVQNISQEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGA 180
            L               V      G +ALH AC+V                  +LL+   
Sbjct: 63  KLYA--AGAG-------VLVAERGGHTALHLACRVRAHT-----------CACVLLQPRP 102

Query: 181 DVSLQTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIACNRG 240
                    +                           ++++ +        P  +     
Sbjct: 103 SHPRDASDTY---------------------------LTQSQDCTPDTSHAPAAVDSQPN 135

Query: 241 HMELVNTMLNNH-ARVDVFDQEGRSALHLAAEHGYLKVSSGKSLKHSVMSFRLPPHNIIP 299
                     +   +++  + +G + LH+A  H   ++                      
Sbjct: 136 PENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVR-------------------- 175

Query: 300 NGFLVHDHAAVIDILTLRK-QTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVA 358
              L  D  A ++       +TPLHLA EA    V +LLL  GA   A    G+ P+  A
Sbjct: 176 --LLR-DAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSA 232

Query: 359 AQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIEELMKFD 408
                P +A+  LRAH +       D  +    +         +E  ++D
Sbjct: 233 LLRPNPILAR-LLRAHGAPEPEDGGDKLSPCSSSGSDSDSDNRDEGDEYD 281

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  161 bits (410), Expect = 1e-45
 Identities = 62/342 (18%), Positives = 104/342 (30%), Gaps = 74/342 (21%)

Query: 138 VNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGADVSLQTKQNHETAFHYC 197
              V EDG +ALH A              + +  +  LL   A                 
Sbjct: 2   FGYVTEDGDTALHLAVI-----------HQHEPFLDFLLGFSAGHE-------------- 36

Query: 198 AVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDV 257
                                   L+ Q  +G T L +A   G    V  +    A V V
Sbjct: 37  -----------------------YLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLV 73

Query: 258 FDQEGRSALHLAAEHGYLKV-----SSGKSLKHSVMSFRLPPHNIIPNGFLVHDHAAVID 312
            ++ G +ALHLA                 S            H    +   +       D
Sbjct: 74  AERGGHTALHLACRVRAHTCACVLLQPRPS------------HPRDASDTYLTQSQ---D 118

Query: 313 ILTLRKQTPLHLAAEA-GQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFL 371
                   P  + ++   + +      D    ++A +  G  P+HVA  +   E+ ++  
Sbjct: 119 CTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLR 178

Query: 372 RAHPSLVTATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGV-ISARNRVTEATPLQLAAE 430
            A   L       G T  H+A    +  V+E L+K   +G   +AR      TPL  A  
Sbjct: 179 DAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLK---AGADPTARMY-GGRTPLGSALL 234

Query: 431 GGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEE 472
             +  + R+L   GA   ++     +    +  +  +   +E
Sbjct: 235 RPNPILARLLRAHGAPEPEDGGDKLSPCSSSGSDSDSDNRDE 276

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  160 bits (406), Expect = 4e-45
 Identities = 63/305 (20%), Positives = 99/305 (32%), Gaps = 43/305 (14%)

Query: 222 LNKQTSIGWTPLLIACNRGHMELVNTMLN---NHARVDVFDQEGRSALHLAAEHGYLKVS 278
               T  G T L +A    H   ++ +L     H  +D+ +  G++ALHLAA  G     
Sbjct: 2   FGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTV 61

Query: 279 SGKSLKHSVMSFRLPPHNIIPNGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLL 338
                                   L     A + +      T LHLA          +LL
Sbjct: 62  E----------------------KLY-AAGAGVLVAERGGHTALHLACRVRAHTCACVLL 98

Query: 339 DLGASI-------------DATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDG 385
               S              D T D    P  V +Q N     +         + A   DG
Sbjct: 99  QPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDG 158

Query: 386 NTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGA 445
           +T  H+A +     ++  L   D    ++        TPL LA E   A+V+ +L+KAGA
Sbjct: 159 HTPLHVAVIHKDAEMVRLLR--DAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGA 216

Query: 446 SCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSK-KLGVTALHVAAYFGQADTVR 504
             T     G T +  A    +  +   +R+  A          ++    +     +D   
Sbjct: 217 DPTARMYGGRTPLGSALLRPNPILARLLRAHGA-PEPEDGGDKLSPCSSSGSDSDSDNRD 275

Query: 505 ELLSH 509
           E   +
Sbjct: 276 EGDEY 280

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  158 bits (403), Expect = 9e-45
 Identities = 57/363 (15%), Positives = 97/363 (26%), Gaps = 102/363 (28%)

Query: 11  ETPLHIAARVKDGDRCALMLLKSGAGPNLTNIAARVKDGDRCALMLLKSGAGPNLTTDDG 70
           +T LH+A   +        LL   AG    ++                         D G
Sbjct: 10  DTALHLAVIHQHEP-FLDFLLGFSAGHEYLDLQ-----------------------NDLG 45

Query: 71  QTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVVDLLIQFVQNIS 130
           QT +H AA  G   T++ L   G   +   + G T LHLA R        +L+Q   +  
Sbjct: 46  QTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHP 105

Query: 131 QEKVLEYV----NSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGADVSLQT 186
           ++    Y+    +   +   +      Q             + +      +    +    
Sbjct: 106 RDASDTYLTQSQDCTPDTSHAPAAVDSQ----------PNPENEEEPRDEDWRLQL---- 151

Query: 187 KQNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIACNRGHMELVN 246
                                                 +   G TPL +A      E+V 
Sbjct: 152 ------------------------------------EAENYDGHTPLHVAVIHKDAEMVR 175

Query: 247 TMLNNHARVDVFDQE-GRSALHLAAEHGYLKVSSGKSLKHSVMSFRLPPHNIIPNGFLVH 305
            + +  A ++  +   GR+ LHLA E     V                         L+ 
Sbjct: 176 LLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLE----------------------LLL- 212

Query: 306 DHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPE 365
              A         +TPL  A       + +LL   GA           P   +  ++  +
Sbjct: 213 KAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGAPEPEDGGDKLSPCSSSGSDSDSD 272

Query: 366 VAQ 368
              
Sbjct: 273 NRD 275

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  156 bits (397), Expect = 7e-44
 Identities = 62/313 (19%), Positives = 94/313 (30%), Gaps = 66/313 (21%)

Query: 259 DQEGRSALHLAAEHGYLKVSSGKSLKHSVMSFRLPPHNIIPNGFLVHDHAA---VIDILT 315
            ++G +ALHLA  H +                           FL+   +A    +D+  
Sbjct: 6   TEDGDTALHLAVIHQHEPFLD----------------------FLL-GFSAGHEYLDLQN 42

Query: 316 LRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHP 375
              QT LHLAA  G+    + L   GA +   +  G   +H+A +      A + L+  P
Sbjct: 43  DLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRP 102

Query: 376 SLVTATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAA-EGGHA 434
           S       D                                   T   P  + +      
Sbjct: 103 S-HPRDASDTYLTQSQDC-----------------------TPDTSHAPAAVDSQPNPEN 138

Query: 435 NVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKA-LNVYSKKLGVTALHV 493
                          EN  G T +H+A  +   +++  +R + A LN      G T LH+
Sbjct: 139 EEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHL 198

Query: 494 AAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVRLLL 553
           A     A  +  LL             GA          G TPL  A    N  + RLL 
Sbjct: 199 AVEAQAASVLELLLKA-----------GADP--TARMYGGRTPLGSALLRPNPILARLLR 245

Query: 554 NSAGVQVDAQTQE 566
            + G        +
Sbjct: 246 -AHGAPEPEDGGD 257

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  134 bits (340), Expect = 8e-36
 Identities = 49/284 (17%), Positives = 81/284 (28%), Gaps = 67/284 (23%)

Query: 8   KLRETPLHIAARVKDGDRCALMLLKSGAGPNLTNIAARVKDGDRCALMLLKSGAGPNLTT 67
            L +T LH+AA + +                                 L  +GAG  +  
Sbjct: 43  DLGQTALHLAAILGEAS---------------------------TVEKLYAAGAGVLVAE 75

Query: 68  DDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKN-------------KIGETPLHL-ASRN 113
             G T +H A +        +LL+                           P  + +  N
Sbjct: 76  RGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPN 135

Query: 114 CKAEVVDLLIQFVQNISQEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVK 173
            + E       +   +          + N DG + LH A              +D + V+
Sbjct: 136 PENEEEPRDEDWRLQL---------EAENYDGHTPLHVAVI-----------HKDAEMVR 175

Query: 174 LLLEAGADVSLQTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPL 233
           LL +AGAD++        T  H    A    VL  +L+   G +       +   G TPL
Sbjct: 176 LLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKA--GADP----TARMYGGRTPL 229

Query: 234 LIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKV 277
             A  R +  L   +  + A       +  S    +        
Sbjct: 230 GSALLRPNPILARLLRAHGAPEPEDGGDKLSPCSSSGSDSDSDN 273

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  133 bits (337), Expect = 2e-35
 Identities = 53/240 (22%), Positives = 78/240 (32%), Gaps = 34/240 (14%)

Query: 344 IDATDDQGQKPIHVAAQNNFPEVAQIFLR--AHPSLVTATTKDGNTCAHIAAMQGSVGVI 401
                + G   +H+A  +         L   A    +      G T  H+AA+ G    +
Sbjct: 2   FGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTV 61

Query: 402 EELMKFDRSGV-ISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDEN--------- 451
           E+L     +G  +    R    T L LA          VL++   S   +          
Sbjct: 62  EKLYA---AGAGVLVAER-GGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQ 117

Query: 452 ----KTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSK-KLGVTALHVAAYFGQADTVREL 506
                T      + +Q       E       L + ++   G T LHVA     A+ VR L
Sbjct: 118 DCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLL 177

Query: 507 LSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVRLLLNSAGVQVDAQTQE 566
                         GA  L +     G TPLHLA  +   +V+ LLL  AG    A+   
Sbjct: 178 RDA-----------GAD-LNKPEPTCGRTPLHLAVEAQAASVLELLL-KAGADPTARMYG 224

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 84.9 bits (211), Expect = 2e-18
 Identities = 26/128 (20%), Positives = 44/128 (34%), Gaps = 19/128 (14%)

Query: 11  ETPLHIAARVKDGDRCALMLLKSGAGPNLTNIAARVKDGDRCALM-------------LL 57
            TPLH+A           +L  +GA     ++        R  L              LL
Sbjct: 159 HTPLHVAVI-HKDAEMVRLLRDAGA-----DLNKPEPTCGRTPLHLAVEAQAASVLELLL 212

Query: 58  KSGAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAE 117
           K+GA P      G+TP+ +A    N +  +LL   G           +P   +  +  ++
Sbjct: 213 KAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGAPEPEDGGDKLSPCSSSGSDSDSD 272

Query: 118 VVDLLIQF 125
             D   ++
Sbjct: 273 NRDEGDEY 280

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  179 bits (457), Expect = 2e-52
 Identities = 56/334 (16%), Positives = 106/334 (31%), Gaps = 58/334 (17%)

Query: 235 IACNRGHMELVNTMLNNHARVDVFDQE-----GRSALHLAAEHGYLKVSSGKSLKHSVMS 289
           +  +  H    + ++   + +   D +     G          G   +S           
Sbjct: 1   MGSSHHHHHHSSGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLS----------- 49

Query: 290 FRLPPHNIIPNGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDD 349
                            +  + D   +   +P+H AA  G     + L+  G +++    
Sbjct: 50  -----------------NPLMGD--AVSDWSPMHEAAIHGHQLSLRNLISQGWAVNIITA 90

Query: 350 QGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIEELMKFDR 409
               P+H A         +I L  H + V   T D +T    A + GS   +  L++   
Sbjct: 91  DHVSPLHEACLGGHLSCVKILL-KHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQ--- 146

Query: 410 SGV-ISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQ 468
            G  +   +    A+P+  AA  GH   V  L+  G +   +     T ++LA +N    
Sbjct: 147 HGASVQPESD--LASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRA 204

Query: 469 VLEEMRSSKALNVYSKKLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGEL 528
            ++++  S A +V   K   + LH        +    L+             GA    + 
Sbjct: 205 CVKKLLESGA-DVNQGKGQDSPLHAVVRTASEELACLLMDF-----------GADT--QA 250

Query: 529 GSESGMTPLHLAAYSGNENVVRLLLNSAGVQVDA 562
            +  G  P+ L          +L L   G  +  
Sbjct: 251 KNAEGKRPVELVPPESPL--AQLFLEREGASLPK 282

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  154 bits (391), Expect = 6e-43
 Identities = 63/325 (19%), Positives = 106/325 (32%), Gaps = 62/325 (19%)

Query: 30  LLKSGAGPNLTNIAARVKDG-------DRCALMLLKSGAGPNLTTDDGQTPVHAAAKYGN 82
           L+  G+     +      DG       D   + LL +            +P+H AA +G+
Sbjct: 14  LVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPL--MGDAVSDWSPMHEAAIHGH 71

Query: 83  LVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVVDLLIQFVQNISQEKVLEYVNSVN 142
            ++L+ L+  G           +PLH A        V +L++    +         N V 
Sbjct: 72  QLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQV---------NGVT 122

Query: 143 EDGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGADVSLQTKQNHETAFHYCAVAGN 202
            D  + L  AC     +            V LLL+ GA V  Q + +  +  H  A  G+
Sbjct: 123 ADWHTPLFNACVSGSWD-----------CVNLLLQHGASV--QPESDLASPIHEAARRGH 169

Query: 203 NDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEG 262
            + +  ++    G  I    + + S   TPL +AC       V  +L + A V+   +  
Sbjct: 170 VECVNSLIAY--GGNI----DHKISHLGTPLYLACENQQRACVKKLLESGADVNQ-GKGQ 222

Query: 263 RSALHLAAEHGYLKVSSGKSLKHSVMSFRLPPHNIIPNGFLVHDHAAVIDILTLRKQTPL 322
            S LH        +++                        L+ D  A         + P+
Sbjct: 223 DSPLHAVVRTASEELAC----------------------LLM-DFGADTQAKNAEGKRPV 259

Query: 323 HLAAEAGQLQVCKLLLDLGASIDAT 347
            L      L     L   GAS+   
Sbjct: 260 ELVPPESPL-AQLFLEREGASLPKP 283

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  151 bits (385), Expect = 4e-42
 Identities = 68/351 (19%), Positives = 109/351 (31%), Gaps = 98/351 (27%)

Query: 56  LLKSGAGPN-----LTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLA 110
           L+  G+            DG  P       G  +    L+ D            +P+H A
Sbjct: 14  LVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVS-------DWSPMHEA 66

Query: 111 SRNCKAEVVDLLIQFVQNISQEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQK 170
           + +     +  LI   Q  +       VN +  D  S LH AC                 
Sbjct: 67  AIHGHQLSLRNLIS--QGWA-------VNIITADHVSPLHEACLGGHLS----------- 106

Query: 171 TVKLLLEAGADVSLQTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGW 230
            VK+LL+ GA V                                        N  T+   
Sbjct: 107 CVKILLKHGAQV----------------------------------------NGVTADWH 126

Query: 231 TPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVSSGKSLKHSVMSF 290
           TPL  AC  G  + VN +L + A V   + +  S +H AA  G+++  +           
Sbjct: 127 TPLFNACVSGSWDCVNLLLQHGASVQP-ESDLASPIHEAARRGHVECVN----------- 174

Query: 291 RLPPHNIIPNGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQ 350
                       L+  +   ID       TPL+LA E  Q    K LL+ GA ++     
Sbjct: 175 -----------SLI-AYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVNQGKG- 221

Query: 351 GQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVI 401
              P+H   +    E+A + +    +   A   +G     +   +  +  +
Sbjct: 222 QDSPLHAVVRTASEELACLLM-DFGADTQAKNAEGKRPVELVPPESPLAQL 271

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  151 bits (383), Expect = 9e-42
 Identities = 52/364 (14%), Positives = 95/364 (26%), Gaps = 103/364 (28%)

Query: 109 LASRNCKAEVVDLLIQFVQNISQEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKED 168
           + S +        L+    +++             DG+                      
Sbjct: 1   MGSSHHHHHHSSGLVPRGSHMASMD----GKQGGMDGSKPAGPRDF-------------- 42

Query: 169 QKTVKLLLEAGADVSLQTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSI 228
                + L +                    +                             
Sbjct: 43  ---PGIRLLSNP-----------------LMGDAVS------------------------ 58

Query: 229 GWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVSSGKSLKHSVM 288
            W+P+  A   GH   +  +++    V++   +  S LH A   G+L             
Sbjct: 59  DWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVK--------- 109

Query: 289 SFRLPPHNIIPNGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATD 348
                         L+  H A ++ +T    TPL  A  +G      LLL  GAS+    
Sbjct: 110 -------------ILL-KHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPES 155

Query: 349 DQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIEELMKF- 407
           D    PIH AA+    E     + A+   +        T  ++A        +++L++  
Sbjct: 156 D-LASPIHEAARRGHVECVNSLI-AYGGNIDHKISHLGTPLYLACENQQRACVKKLLESG 213

Query: 408 -----DRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAA 462
                 +             +PL          +  +L+  GA    +N  G   V L  
Sbjct: 214 ADVNQGKGQ----------DSPLHAVVRTASEELACLLMDFGADTQAKNAEGKRPVELVP 263

Query: 463 QNGH 466
               
Sbjct: 264 PESP 267

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  145 bits (368), Expect = 9e-40
 Identities = 48/272 (17%), Positives = 90/272 (33%), Gaps = 42/272 (15%)

Query: 12  TPLHIAARVKDGDRCALMLLKSGAGPNLTN------IAARVKDGDRCALMLLKSGAGPNL 65
            P              + LL +    +  +       AA           L+  G   N+
Sbjct: 35  KPAGPRDFPG------IRLLSNPLMGDAVSDWSPMHEAAIHGHQL-SLRNLISQGWAVNI 87

Query: 66  TTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVVDLLIQF 125
            T D  +P+H A   G+L  +++LL+ G           TPL  A  +   + V+LL+Q 
Sbjct: 88  ITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQH 147

Query: 126 VQNISQEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGADVSLQ 185
             ++  E           D AS +H A +           +   + V  L+  G ++  +
Sbjct: 148 GASVQPES----------DLASPIHEAAR-----------RGHVECVNSLIAYGGNIDHK 186

Query: 186 TKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIACNRGHMELV 245
              +  T  +          +  +LE   G ++++          +PL         EL 
Sbjct: 187 IS-HLGTPLYLACENQQRACVKKLLES--GADVNQGKG-----QDSPLHAVVRTASEELA 238

Query: 246 NTMLNNHARVDVFDQEGRSALHLAAEHGYLKV 277
             +++  A     + EG+  + L      L  
Sbjct: 239 CLLMDFGADTQAKNAEGKRPVELVPPESPLAQ 270

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  124 bits (315), Expect = 2e-32
 Identities = 51/243 (20%), Positives = 89/243 (36%), Gaps = 39/243 (16%)

Query: 11  ETPLHIAARVKDGDRCALMLLKSGAGPNLTN--------IAARVKDGDRCALMLLKSGAG 62
            +P+H AA           L+  G   N+           A        C  +LLK GA 
Sbjct: 60  WSPMHEAAIHGHQL-SLRNLISQGWAVNIITADHVSPLHEACL-GGHLSCVKILLKHGAQ 117

Query: 63  PNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVVDLL 122
            N  T D  TP+  A   G+   + LLL+ G     ++    +P+H A+R    E V+ L
Sbjct: 118 VNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPESD-LASPIHEAARRGHVECVNSL 176

Query: 123 IQFVQNISQEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGADV 182
           I +  NI         +       + L+ AC+  +              VK LLE+GADV
Sbjct: 177 IAYGGNI---------DHKISHLGTPLYLACENQQRA-----------CVKKLLESGADV 216

Query: 183 SLQTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIACNRGHM 242
                +  ++  H      + ++   +++   G +       + + G  P+ +      +
Sbjct: 217 --NQGKGQDSPLHAVVRTASEELACLLMDF--GADT----QAKNAEGKRPVELVPPESPL 268

Query: 243 ELV 245
             +
Sbjct: 269 AQL 271

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  105 bits (264), Expect = 2e-25
 Identities = 38/179 (21%), Positives = 59/179 (32%), Gaps = 31/179 (17%)

Query: 11  ETPLHIAARVKDGDRCALMLLKSGAGPNLTN-------IAARVKDGDRCALMLLKSGAGP 63
            TPL  A        C  +LL+ GA     +        AAR +    C   L+  G   
Sbjct: 126 HTPLFNACV-SGSWDCVNLLLQHGASVQPESDLASPIHEAAR-RGHVECVNSLIAYGGNI 183

Query: 64  NLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVVDLLI 123
           +       TP++ A +      ++ LLE G D   + K  ++PLH   R    E+  LL+
Sbjct: 184 DHKISHLGTPLYLACENQQRACVKKLLESGADVN-QGKGQDSPLHAVVRTASEELACLLM 242

Query: 124 QFVQNISQEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGADV 182
            F  +           + N +G   +                 E       L   GA +
Sbjct: 243 DFGADT---------QAKNAEGKRPVELVPP------------ESPLAQLFLEREGASL 280

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 90.2 bits (225), Expect = 3e-20
 Identities = 40/241 (16%), Positives = 62/241 (25%), Gaps = 86/241 (35%)

Query: 324 LAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTK 383
           + +          L+  G+ + + D +                                 
Sbjct: 1   MGSSHHHHHHSSGLVPRGSHMASMDGKQ-----------------------------GGM 31

Query: 384 DGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKA 443
           DG+  A      G   +   LM    S            +P+  AA  GH   +R L+  
Sbjct: 32  DGSKPAGPRDFPGIRLLSNPLMGDAVSD----------WSPMHEAAIHGHQLSLRNLISQ 81

Query: 444 GASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLGVTALHVAAYFGQADTV 503
           G +         + +H A   GH                                    V
Sbjct: 82  GWAVNIITADHVSPLHEACLGGH---------------------------------LSCV 108

Query: 504 RELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVRLLLNSAGVQVDAQ 563
           + LL H           GA       +    TPL  A  SG+ + V LLL   G  V  +
Sbjct: 109 KILLKH-----------GAQV--NGVTADWHTPLFNACVSGSWDCVNLLL-QHGASVQPE 154

Query: 564 T 564
           +
Sbjct: 155 S 155

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 83.7 bits (208), Expect = 5e-18
 Identities = 29/128 (22%), Positives = 46/128 (35%), Gaps = 12/128 (9%)

Query: 5   NSGKLRETPLHIAARVKDGDRCALMLLKSGAGPNLTN--------IAARVKDGDRCALML 56
                  +P+H AAR +    C   L+  G   +           +A        C   L
Sbjct: 152 QPESDLASPIHEAAR-RGHVECVNSLIAYGGNIDHKISHLGTPLYLACE-NQQRACVKKL 209

Query: 57  LKSGAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKA 116
           L+SGA  N       +P+HA  +  +     LL++ G D   KN  G+ P+ L       
Sbjct: 210 LESGADVN-QGKGQDSPLHAVVRTASEELACLLMDFGADTQAKNAEGKRPVELVPPESPL 268

Query: 117 EVVDLLIQ 124
             +  L +
Sbjct: 269 AQL-FLER 275

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  179 bits (457), Expect = 2e-51
 Identities = 68/436 (15%), Positives = 134/436 (30%), Gaps = 105/436 (24%)

Query: 58  KSGAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAE 117
           +     + +    Q  +  A+  G +   +  L+              P      N    
Sbjct: 25  EKNRKNHQSITSSQHSLLEASYDGYIKRQRNELQHYS---------LYPNPQGYGNGNDF 75

Query: 118 VVDLLIQFVQNISQEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLE 177
           + D     +Q                +    LH              +       + +  
Sbjct: 76  LGDFNHTNLQIP---------TEPEPESPIKLHTE------------AAGSYAITEPITR 114

Query: 178 AGADVSLQTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKA--LNKQTSIGWTPLLI 235
              ++     +++ T  H+ A   + +    ++   +   I+    +N       TPL++
Sbjct: 115 ESVNI--IDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLML 172

Query: 236 ACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVSSGKSLKHSVMSFRLPPH 295
           A       LV  ++   A   ++++  RSALH AA +    +                  
Sbjct: 173 AVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMV---------------- 216

Query: 296 NIIPNGFLVHDHA--AVIDILTLRKQTPLHLAAEAG---QLQVCKLLLDLGASI------ 344
                 ++++       I+ L     T L + A      Q+   KLL++ GA +      
Sbjct: 217 ------YMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAA 270

Query: 345 --DATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIE 402
             D+   +G+  +H AAQ +   + +  +    S      +DG T               
Sbjct: 271 RKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKT--------------- 315

Query: 403 ELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAA 462
                                P+ LAA+ G   VV  L++ GAS    + T  TA  LA 
Sbjct: 316 ---------------------PIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQ 354

Query: 463 QNGHNQVLEEMRSSKA 478
            N H+ +++     + 
Sbjct: 355 ANNHHNIVDIFDRCRP 370

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  171 bits (435), Expect = 2e-48
 Identities = 68/382 (17%), Positives = 120/382 (31%), Gaps = 62/382 (16%)

Query: 201 GNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQ 260
                   +LE      I +  N+       P       G+  L +    N       + 
Sbjct: 33  SITSSQHSLLEASYDGYIKRQRNELQHYSLYPNPQGYGNGNDFLGDFNHTNLQIPTEPEP 92

Query: 261 EGRSALHLAAEHGYLKVSSGKSLKHSVMSFRLPPHNIIPNGFLVHDHAAVIDILTLRKQT 320
           E    LH  A  G   ++                        +  +   +ID      +T
Sbjct: 93  ESPIKLHTEA-AGSYAITE----------------------PITRESVNIID--PRHNRT 127

Query: 321 PLHLAAEAGQLQVCKLLL--------DLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLR 372
            LH  A     +  + L+          GA ++A D     P+ +A       +    + 
Sbjct: 128 VLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLM- 186

Query: 373 AHPSLVTATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGV-ISARNRVTEATPLQLAAEG 431
              +  T   K   +  H AA     G++  ++   +    I   +R    T L + A  
Sbjct: 187 KAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDR-NGMTALMIVAHN 245

Query: 432 GHANVVRV---LVKAGA--------SCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALN 480
              + V     LV+ GA            E   G TA+H AAQ  +  +++ +   K  N
Sbjct: 246 EGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSN 305

Query: 481 VYSK-KLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHL 539
              + + G T + +AA  G+ + V  L+             GAS   E    +  T   L
Sbjct: 306 KDKQDEDGKTPIMLAAQEGRIEVVMYLIQQ-----------GASV--EAVDATDHTARQL 352

Query: 540 AAYSGNENVVRLLLNSAGVQVD 561
           A  + + N+V +       + +
Sbjct: 353 AQANNHHNIVDIFD-RCRPERE 373

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  171 bits (435), Expect = 3e-48
 Identities = 70/373 (18%), Positives = 126/373 (33%), Gaps = 56/373 (15%)

Query: 11  ETPLHIAARVKDGDRCALMLLKSGAGPNLTNIAARVKDGDRCALMLLKSGAGPNLTTDDG 70
           +  L  A+   DG                        +          +   P     + 
Sbjct: 38  QHSLLEAS--YDGYIKRQRNELQHYSLYPNPQGYGNGNDF-LGDFNHTNLQIPTEPEPES 94

Query: 71  QTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVVDLLIQFVQNIS 130
              +H  A  G+    + +  +  + +   +   T LH  + N  AE  + LI       
Sbjct: 95  PIKLHTEAA-GSYAITEPITRESVNII-DPRHNRTVLHWIASNSSAEKSEDLIVHEAKEC 152

Query: 131 QEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGADVSLQTKQNH 190
                + VN+++ D  + L  A    +              V  L++AGAD ++  K + 
Sbjct: 153 IAAGAD-VNAMDCDENTPLMLAVLARRRR-----------LVAYLMKAGADPTIYNK-SE 199

Query: 191 ETAFHYCAVAGNNDVLTGMLEQMS-GTEISKALNKQTSIGWTPLLIACNRGHMELVNTM- 248
            +A H  A   +  ++  ML       +I     +    G T L+I  +    + V +  
Sbjct: 200 RSALHQAAANRDFGMMVYMLNSTKLKGDI----EELDRNGMTALMIVAHNEGRDQVASAK 255

Query: 249 ----------LNNHARVDVFDQEGRSALHLAAEHGYLKVSSGKSLKHSVMSFRLPPHNII 298
                      +  AR D    +GR+ALH AA+   + +                     
Sbjct: 256 LLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVK------------------- 296

Query: 299 PNGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVA 358
              +LV +  +  D      +TP+ LAA+ G+++V   L+  GAS++A D        +A
Sbjct: 297 ---YLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLA 353

Query: 359 AQNNFPEVAQIFL 371
             NN   +  IF 
Sbjct: 354 QANNHHNIVDIFD 366

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  160 bits (408), Expect = 2e-44
 Identities = 64/373 (17%), Positives = 116/373 (31%), Gaps = 73/373 (19%)

Query: 213 MSGTEISKALNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEH 272
           M   E ++  ++  +     LL A   G+++            +               +
Sbjct: 21  MENEEKNRKNHQSITSSQHSLLEASYDGYIKRQ---------RNELQHYSLYPNPQGYGN 71

Query: 273 GYLKVSSGKSLKHSVMSFRLPPHNIIPNGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQ 332
           G   +                           H +  +           LH  A  G   
Sbjct: 72  GNDFLGD-----------------------FNHTNLQIPTEPEPESPIKLHTEAA-GSYA 107

Query: 333 VCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSL-------VTATTKDG 385
           + + +     +I       +  +H  A N+  E ++  +             V A   D 
Sbjct: 108 ITEPITRESVNIIDPRH-NRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDE 166

Query: 386 NTCAHIAAMQGSVGVIEELMKFDRSGV-ISARNRVTEATPLQLAAEGGHANVVRVLV--- 441
           NT   +A +     ++  LMK   +G   +  N+ +E + L  AA      ++  ++   
Sbjct: 167 NTPLMLAVLARRRRLVAYLMK---AGADPTIYNK-SERSALHQAAANRDFGMMVYMLNST 222

Query: 442 KAGASCTDENKTGFTAVHLAAQNGHNQVLEEMR----------SSKALNVYSK-KLGVTA 490
           K      + ++ G TA+ + A N     +   +             A    S+   G TA
Sbjct: 223 KLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTA 282

Query: 491 LHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVR 550
           LH AA       V+ L+             G++   +   E G TP+ LAA  G   VV 
Sbjct: 283 LHYAAQVSNMPIVKYLVGEK----------GSNK--DKQDEDGKTPIMLAAQEGRIEVVM 330

Query: 551 LLLNSAGVQVDAQ 563
            L+   G  V+A 
Sbjct: 331 YLI-QQGASVEAV 342

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  152 bits (385), Expect = 3e-41
 Identities = 52/350 (14%), Positives = 101/350 (28%), Gaps = 86/350 (24%)

Query: 11  ETPLHIAARVKDGDRCALMLLKSGAGPNLTN-------IAARVKDGD-------RCALML 56
              LH  A           + +                  A     +         A   
Sbjct: 95  PIKLHTEA--AGSYAITEPITRESVNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKEC 152

Query: 57  LKSGAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKA 116
           + +GA  N    D  TP+  A        +  L++ G DP   NK   + LH A+ N   
Sbjct: 153 IAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDF 212

Query: 117 EVVDLLIQFVQNISQEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLL 176
            ++  +      ++  K+   +  ++ +G +AL                ++   + KLL+
Sbjct: 213 GMMVYM------LNSTKLKGDIEELDRNGMTALMIVAH--------NEGRDQVASAKLLV 258

Query: 177 EAGADVSLQTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIA 236
           E GA V        +        +                            G T L  A
Sbjct: 259 EKGAKVDYDGAARKD--------SEKYK------------------------GRTALHYA 286

Query: 237 CNRGHMELVNTMLNNH-ARVDVFDQEGRSALHLAAEHGYLKVSSGKSLKHSVMSFRLPPH 295
               +M +V  ++    +  D  D++G++ + LAA+ G ++V                  
Sbjct: 287 AQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVM---------------- 330

Query: 296 NIIPNGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASID 345
                 +L+    A ++ +     T   LA       +  +        +
Sbjct: 331 ------YLI-QQGASVEAVDATDHTARQLAQANNHHNIVDIFDRCRPERE 373

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  117 bits (295), Expect = 6e-29
 Identities = 54/279 (19%), Positives = 97/279 (34%), Gaps = 52/279 (18%)

Query: 5   NSGKLRETPLHIAARVKDGD-------RCALMLLKSGAGPNLTNIAARVKDGDRCALM-- 55
              +   T LH  A     +         A   + +GA     ++ A   D     LM  
Sbjct: 120 IDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGA-----DVNAMDCDE-NTPLMLA 173

Query: 56  -----------LLKSGAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLE---DGGDPMYKNK 101
                      L+K+GA P +     ++ +H AA   +   +  +L      GD    ++
Sbjct: 174 VLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDR 233

Query: 102 IGETPLHLASRNCKAEVVD---LLIQFVQNISQEKVLEYVNSVNEDGASALHYACQVTKA 158
            G T L + + N   + V    LL++    +         +S    G +ALHYA QV+  
Sbjct: 234 NGMTALMIVAHNEGRDQVASAKLLVEKGAKV-DYDGAARKDSEKYKGRTALHYAAQVSNM 292

Query: 159 ELIPITSKEDQKTVKLLL-EAGADVSLQTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTE 217
                        VK L+ E G++   Q + + +T     A  G  +V+  +++Q  G  
Sbjct: 293 P-----------IVKYLVGEKGSNKDKQDE-DGKTPIMLAAQEGRIEVVMYLIQQ--GAS 338

Query: 218 ISKALNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVD 256
           +        +   T   +A    H  +V+         +
Sbjct: 339 V----EAVDATDHTARQLAQANNHHNIVDIFDRCRPERE 373

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  168 bits (429), Expect = 3e-48
 Identities = 59/327 (18%), Positives = 116/327 (35%), Gaps = 49/327 (14%)

Query: 229 GWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVSSGKSLKHSVM 288
                 +    G    +   +    +  V   +G      A   G  +            
Sbjct: 8   QKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDGA-VFLAACSSGDTEEVL--------- 57

Query: 289 SFRLPPHNIIPNGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATD 348
                         L+ +  A I+   +   T LH A     + + K L++ GA+I+  D
Sbjct: 58  -------------RLL-ERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPD 103

Query: 349 DQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIEELMKFD 408
           ++G  P+H AA   + ++A+  + +  + V A   +G+T   IA  +    +++  +   
Sbjct: 104 NEGWIPLHAAASCGYLDIAEYLI-SQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEV--- 159

Query: 409 RSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQ 468
                  R  V      +        +  + L     +     K+G TA+H+AA  G+ +
Sbjct: 160 ------NRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTE 213

Query: 469 VLEEMRSSKALNVYSK-KLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGE 527
           VL+ +  ++  +V  K   G T LH AA++G+ +  R L+ +                 E
Sbjct: 214 VLKLLIQARY-DVNIKDYDGWTPLHAAAHWGKEEACRILVEN-----------LCDM--E 259

Query: 528 LGSESGMTPLHLAAYSGNENVVRLLLN 554
             ++ G T   +A       +  L   
Sbjct: 260 AVNKVGQTAFDVADEDILGYLEELQKK 286

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  167 bits (425), Expect = 1e-47
 Identities = 73/422 (17%), Positives = 121/422 (28%), Gaps = 128/422 (30%)

Query: 64  NLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVVDLLI 123
            +     +         G+   L+  +        K   G   L   S     E V  L+
Sbjct: 2   KMADAKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDGAVFLAACSSGDT-EEVLRLL 60

Query: 124 QFVQNISQEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGADVS 183
           +   +I         N  N DG +ALH AC             ++   VK L+E GA++ 
Sbjct: 61  ERGADI---------NYANVDGLTALHQACI-----------DDNVDMVKFLVENGANI- 99

Query: 184 LQTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIACNRGHME 243
                                                  N+  + GW PL  A + G+++
Sbjct: 100 ---------------------------------------NQPDNEGWIPLHAAASCGYLD 120

Query: 244 LVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVSSGKSLKHSVMSFRLPPHNIIPNGFL 303
           +   +++  A V   + EG + L +A E    ++                          
Sbjct: 121 IAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQ----------------------NE 158

Query: 304 VHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNF 363
           V+     I+                      + L     +       G   +HVAA   +
Sbjct: 159 VNRQGVDIE-------AARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGY 211

Query: 364 PEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEAT 423
            EV ++ ++A    V     DG                                     T
Sbjct: 212 TEVLKLLIQARYD-VNIKDYDGW------------------------------------T 234

Query: 424 PLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYS 483
           PL  AA  G     R+LV+        NK G TA  +A ++     LEE++  + L    
Sbjct: 235 PLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVADEDILGY-LEELQKKQNLLHSE 293

Query: 484 KK 485
           K+
Sbjct: 294 KR 295

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  159 bits (406), Expect = 5e-45
 Identities = 60/319 (18%), Positives = 107/319 (33%), Gaps = 42/319 (13%)

Query: 192 TAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIACNRGHMELVNTMLNN 251
                    G+   L   + +       +   K         L AC+ G  E V  +L  
Sbjct: 10  RNEQLKRWIGSETDLEPPVVK-------RKKTKVKFDDGAVFLAACSSGDTEEVLRLLER 62

Query: 252 HARVDVFDQEGRSALHLAAEHGYLKVSSGKSLKHSVMSFRLPPHNIIPNGFLVHDHAAVI 311
            A ++  + +G +ALH A     + +                        FLV ++ A I
Sbjct: 63  GADINYANVDGLTALHQACIDDNVDMVK----------------------FLV-ENGANI 99

Query: 312 DILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFL 371
           +        PLH AA  G L + + L+  GA + A + +G  P+ +A +    E+ Q   
Sbjct: 100 NQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQN-- 157

Query: 372 RAHPSLVTATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEG 431
                 V     D                 + L             + +  T L +AA  
Sbjct: 158 -----EVNRQGVDIEAARKEEERIMLRDARQWLN--SGHINDVRHAK-SGGTALHVAAAK 209

Query: 432 GHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSK-KLGVTA 490
           G+  V+++L++A      ++  G+T +H AA  G  +    +  +   ++ +  K+G TA
Sbjct: 210 GYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLC-DMEAVNKVGQTA 268

Query: 491 LHVAAYFGQADTVRELLSH 509
             VA               
Sbjct: 269 FDVADEDILGYLEELQKKQ 287

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  155 bits (394), Expect = 4e-43
 Identities = 56/375 (14%), Positives = 112/375 (29%), Gaps = 110/375 (29%)

Query: 8   KLRETPLHIAARVKDGDRCALMLLKSGAGPNLTNIAARVKDGDRCALM------------ 55
             ++    +   +          +              VK  D    +            
Sbjct: 6   AKQKRNEQLKRWIGSETDLEP-PVVKRKKTK-------VKFDDGAVFLAACSSGDTEEVL 57

Query: 56  -LLKSGAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNC 114
            LL+ GA  N    DG T +H A    N+  ++ L+E+G +    +  G  PLH A+   
Sbjct: 58  RLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCG 117

Query: 115 KAEVVDLLIQFVQNISQEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKL 174
             ++ + LI    ++          +VN +G + L  A +           +  ++ ++ 
Sbjct: 118 YLDIAEYLISQGAHV---------GAVNSEGDTPLDIAEE-----------EAMEELLQN 157

Query: 175 LLEAGADVSLQTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLL 234
            +                        G +                               
Sbjct: 158 EVNRQ---------------------GVD-------------------------IEAARK 171

Query: 235 IACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVSSGKSLKHSVMSFRLPP 294
                   +    + + H       + G +ALH+AA  GY +V                 
Sbjct: 172 EEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLK--------------- 216

Query: 295 HNIIPNGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKP 354
                   L+      ++I      TPLH AA  G+ + C++L++    ++A +  GQ  
Sbjct: 217 -------LLI-QARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTA 268

Query: 355 IHVAAQNNFPEVAQI 369
             VA ++    + ++
Sbjct: 269 FDVADEDILGYLEEL 283

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  103 bits (260), Expect = 8e-25
 Identities = 33/223 (14%), Positives = 67/223 (30%), Gaps = 29/223 (13%)

Query: 344 IDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIEE 403
           +   D + ++   +          +  +            DG      A   G    +  
Sbjct: 1   MKMADAKQKRNEQLKRWIGSETDLEPPVV-KRKKTKVKFDDGAV-FLAACSSGDTEEVLR 58

Query: 404 LMKFDRSGV-ISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAA 462
           L++    G  I+  N V   T L  A    + ++V+ LV+ GA+    +  G+  +H AA
Sbjct: 59  LLE---RGADINYAN-VDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAA 114

Query: 463 QNGHNQVLEEMRSSKALNVYSK-KLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTG 521
             G+  + E + S  A +V +    G T L +A      + ++  ++             
Sbjct: 115 SCGYLDIAEYLISQGA-HVGAVNSEGDTPLDIAEEEAMEELLQNEVNR------------ 161

Query: 522 ASFLGELGSESGMTPLHLAAYSGNENVVRLLLNSAGVQVDAQT 564
                                    +  + L  S  +      
Sbjct: 162 -------QGVDIEAARKEEERIMLRDARQWLN-SGHINDVRHA 196

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 77.2 bits (191), Expect = 8e-16
 Identities = 28/131 (21%), Positives = 51/131 (38%), Gaps = 10/131 (7%)

Query: 11  ETPLHIAARVKDGDRCALMLLKSGAGPNLTN--------IAARVKDGDRCALMLLKSGAG 62
           E       R+   D     L                   +AA  K       +L+++   
Sbjct: 167 EAARKEEERIMLRD-ARQWLNSGHINDVRHAKSGGTALHVAAA-KGYTEVLKLLIQARYD 224

Query: 63  PNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVVDLL 122
            N+   DG TP+HAAA +G     ++L+E+  D    NK+G+T   +A  +    + +L 
Sbjct: 225 VNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVADEDILGYLEELQ 284

Query: 123 IQFVQNISQEK 133
            +     S+++
Sbjct: 285 KKQNLLHSEKR 295

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 44.0 bits (105), Expect = 6e-05
 Identities = 18/99 (18%), Positives = 34/99 (34%), Gaps = 10/99 (10%)

Query: 11  ETPLHIAARVKDGDRCALMLLKSGAGPNLTN--------IAARVKDGDRCALMLLKSGAG 62
            T LH+AA  K       +L+++    N+ +         AA     + C + L+++   
Sbjct: 200 GTALHVAAA-KGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRI-LVENLCD 257

Query: 63  PNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNK 101
                  GQT    A +       +L  +       K +
Sbjct: 258 MEAVNKVGQTAFDVADEDILGYLEELQKKQNLLHSEKRE 296

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score =  166 bits (423), Expect = 5e-48
 Identities = 62/242 (25%), Positives = 115/242 (47%), Gaps = 19/242 (7%)

Query: 318 KQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSL 377
           K++PLH AAEAG + +C +L+  GA+ID   +  + P+  AA+NN  E  +  +    +L
Sbjct: 11  KRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLI-KAGAL 69

Query: 378 VTATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVV 437
           V     +G+TC H+AA +G   V++ L+   +   ++ ++     TP+  A E  H ++V
Sbjct: 70  VDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMD-VNCQDD-GGWTPMIWATEYKHVDLV 127

Query: 438 RVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSK-KLGVTALHVAAY 496
           ++L+  G+     +      +H AA +G   + E + ++K  ++++    G + LH+AA 
Sbjct: 128 KLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKC-DLHAVNIHGDSPLHIAAR 186

Query: 497 FGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVRLLLNSA 556
             + D V   LS             +     L ++ G TPL  A+ +        +   A
Sbjct: 187 ENRYDCVVLFLSR-----------DSDV--TLKNKEGETPLQCASLNSQVWSALQMS-KA 232

Query: 557 GV 558
             
Sbjct: 233 LQ 234

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score =  141 bits (358), Expect = 7e-39
 Identities = 51/223 (22%), Positives = 99/223 (44%), Gaps = 26/223 (11%)

Query: 55  MLLKSGAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNC 114
           ML+++GA  +  ++D +TP+  AA+  +L  ++ L++ G     K+  G T LHLA++  
Sbjct: 29  MLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEGSTCLHLAAKKG 88

Query: 115 KAEVVDLLIQFVQNISQEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKL 174
             EVV  L+              VN  ++ G + + +A +            +    VKL
Sbjct: 89  HYEVVQYLL--------SNGQMDVNCQDDGGWTPMIWATE-----------YKHVDLVKL 129

Query: 175 LLEAGADVSLQTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLL 234
           LL  G+D++++         H+ A +G  D+   +L      ++    +     G +PL 
Sbjct: 130 LLSKGSDINIRDN-EENICLHWAAFSGCVDIAEILLAA--KCDL----HAVNIHGDSPLH 182

Query: 235 IACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKV 277
           IA      + V   L+  + V + ++EG + L  A+ +  +  
Sbjct: 183 IAARENRYDCVVLFLSRDSDVTLKNKEGETPLQCASLNSQVWS 225

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score =  129 bits (326), Expect = 2e-34
 Identities = 47/226 (20%), Positives = 91/226 (40%), Gaps = 23/226 (10%)

Query: 344 IDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIEE 403
                   + P+H AA+    ++  + +    + +   ++D  T    AA    +  ++ 
Sbjct: 4   FKMEHQNKRSPLHAAAEAGHVDICHMLV-QAGANIDTCSEDQRTPLMEAAENNHLEAVKY 62

Query: 404 LMKFDRSGV-ISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDE-NKTGFTAVHLA 461
           L+K   +G  +  ++    +T L LAA+ GH  VV+ L+  G    +  +  G+T +  A
Sbjct: 63  LIK---AGALVDPKDA-EGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWA 118

Query: 462 AQNGHNQVLEEMRSSKALNVYSK-KLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPT 520
            +  H  +++ + S  + ++  +       LH AA+ G  D    LL+            
Sbjct: 119 TEYKHVDLVKLLLSKGS-DINIRDNEENICLHWAAFSGCVDIAEILLAA----------- 166

Query: 521 GASFLGELGSESGMTPLHLAAYSGNENVVRLLLNSAGVQVDAQTQE 566
                    +  G +PLH+AA     + V L L S    V  + +E
Sbjct: 167 KCDL--HAVNIHGDSPLHIAARENRYDCVVLFL-SRDSDVTLKNKE 209

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score =  120 bits (303), Expect = 3e-31
 Identities = 58/257 (22%), Positives = 96/257 (37%), Gaps = 48/257 (18%)

Query: 11  ETPLHIAARVKDGDRCALMLLKSGAGPNLTNIAARVKDGDRCALM-------------LL 57
            +PLH AA     D    ML+++GA     NI    +D  R  LM             L+
Sbjct: 12  RSPLHAAAEAGHVD-ICHMLVQAGA-----NIDTCSEDQ-RTPLMEAAENNHLEAVKYLI 64

Query: 58  KSGAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDG-GDPMYKNKIGETPLHLASRNCKA 116
           K+GA  +    +G T +H AAK G+   +Q LL +G  D   ++  G TP+  A+     
Sbjct: 65  KAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHV 124

Query: 117 EVVDLLIQFVQNISQEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLL 176
           ++V LL+    +I         N  + +    LH+A      +             ++LL
Sbjct: 125 DLVKLLLSKGSDI---------NIRDNEENICLHWAAFSGCVD-----------IAEILL 164

Query: 177 EAGADVSLQTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIA 236
            A  D+      + ++  H  A     D +   L +   +++      +   G TPL  A
Sbjct: 165 AAKCDLHAVNI-HGDSPLHIAARENRYDCVVLFLSR--DSDV----TLKNKEGETPLQCA 217

Query: 237 CNRGHMELVNTMLNNHA 253
                +     M     
Sbjct: 218 SLNSQVWSALQMSKALQ 234

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 98.6 bits (247), Expect = 1e-23
 Identities = 36/184 (19%), Positives = 67/184 (36%), Gaps = 39/184 (21%)

Query: 11  ETPLHIAARVKDGDRCALMLLKSGAGPNLTNIAARVKDGDRCALM-------------LL 57
            T LH+AA+ K        LL +G      ++  +   G    ++             LL
Sbjct: 78  STCLHLAAK-KGHYEVVQYLLSNGQ----MDVNCQDDGG-WTPMIWATEYKHVDLVKLLL 131

Query: 58  KSGAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAE 117
             G+  N+  ++    +H AA  G +   ++LL    D    N  G++PLH+A+R  + +
Sbjct: 132 SKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSPLHIAARENRYD 191

Query: 118 VVDLLIQFVQNISQEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLE 177
            V L +    ++            N++G + L  A                  +   + +
Sbjct: 192 CVVLFLSRDSDV---------TLKNKEGETPLQCASL-----------NSQVWSALQMSK 231

Query: 178 AGAD 181
           A  D
Sbjct: 232 ALQD 235

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  165 bits (421), Expect = 3e-47
 Identities = 65/318 (20%), Positives = 107/318 (33%), Gaps = 50/318 (15%)

Query: 259 DQEGRSALHLAAEHGYLKVSSGKSLKHSVMSFRLPPHNIIPNGFLVHDHAAVIDILTLR- 317
             E    L  A ++  + +                         L+ +  A ++      
Sbjct: 2   AVEDNHLLIKAVQNEDVDLVQ----------------------QLL-EGGANVNFQEEEG 38

Query: 318 KQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSL 377
             TPLH A +  +  + +LLL  GA        G  P  +AA     ++ ++FL +  + 
Sbjct: 39  GWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFL-SKGAD 97

Query: 378 VTATTKDGNTCAHIAAMQGSVGVIEELMK-------FDRSGVISARNRVTEATPLQLAAE 430
           V      G T    AA+ G V  ++ L K         ++     R R   AT L  AAE
Sbjct: 98  VNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAE 157

Query: 431 GGHANVVRVLV-KAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRS---SKALNVYSK-K 485
            GH  V+++L+ + GA     +  G  A+  A  +  +  +E +         +V  + +
Sbjct: 158 KGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGE 217

Query: 486 LGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGN 545
            G T L +A        V+ LL                         G T L LA     
Sbjct: 218 RGKTPLILAVEKKHLGLVQRLLEQE----------HIEI--NDTDSDGKTALLLAVELKL 265

Query: 546 ENVVRLLLNSAGVQVDAQ 563
           + +  LL    G   D  
Sbjct: 266 KKIAELLC-KRGASTDCG 282

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  161 bits (411), Expect = 8e-46
 Identities = 70/312 (22%), Positives = 127/312 (40%), Gaps = 51/312 (16%)

Query: 69  DGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKI-GETPLHLASRNCKAEVVDLLIQFVQ 127
           +    +  A +  ++  +Q LLE G +  ++ +  G TPLH A +  + ++V+LL++   
Sbjct: 4   EDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGA 63

Query: 128 NISQEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGADVSLQTK 187
           +              ++GA+    A                 K +KL L  GADV+    
Sbjct: 64  DP---------VLRKKNGATPFLLAAI-----------AGSVKLLKLFLSKGADVNECDF 103

Query: 188 QNHETAFHYCAVAGNNDVLTGMLEQMSGTEI------SKALNKQTSIGWTPLLIACNRGH 241
               TAF   AV G    L  + ++  G  +       +   +    G T L+ A  +GH
Sbjct: 104 -YGFTAFMEAAVYGKVKALKFLYKR--GANVNLRRKTKEDQERLRKGGATALMDAAEKGH 160

Query: 242 MELVNTMLNNH-ARVDVFDQEGRSALHLAAEHGYLKVSSGKSLKHSVMSFRLPPHNIIPN 300
           +E++  +L+   A V+  D  GR+AL  A             ++                
Sbjct: 161 VEVLKILLDEMGADVNACDNMGRNALIHALLSS-----DDSDVEAIT------------- 202

Query: 301 GFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLD-LGASIDATDDQGQKPIHVAA 359
             L+ DH A +++   R +TPL LA E   L + + LL+     I+ TD  G+  + +A 
Sbjct: 203 HLLL-DHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAV 261

Query: 360 QNNFPEVAQIFL 371
           +    ++A++  
Sbjct: 262 ELKLKKIAELLC 273

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  156 bits (396), Expect = 1e-43
 Identities = 78/357 (21%), Positives = 124/357 (34%), Gaps = 98/357 (27%)

Query: 11  ETPLHIAARVKDGDRCALMLLKSGAGPNLTNIAARVKDGDRCALM-------------LL 57
              L  A + +D D     LL+ GA     N+  + ++G    L              LL
Sbjct: 6   NHLLIKAVQNEDVDLVQQ-LLEGGA-----NVNFQEEEGGWTPLHNAVQMSREDIVELLL 59

Query: 58  KSGAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAE 117
           + GA P L   +G TP   AA  G++  L+L L  G D    +  G T    A+   K +
Sbjct: 60  RHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVK 119

Query: 118 VVDLLIQFVQNI-SQEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLL 176
            +  L +   N+  + K  E    + + GA+AL  A +           K   + +K+LL
Sbjct: 120 ALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAE-----------KGHVEVLKILL 168

Query: 177 -EAGADVSLQTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLI 235
            E GADV                                        N   ++G   L+ 
Sbjct: 169 DEMGADV----------------------------------------NACDNMGRNALIH 188

Query: 236 ACNRGHM----ELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVSSGKSLKHSVMSFR 291
           A           + + +L++ A V+V  + G++ L LA E  +L +              
Sbjct: 189 ALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQ------------ 236

Query: 292 LPPHNIIPNGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATD 348
                      L+      I+      +T L LA E    ++ +LL   GAS D  D
Sbjct: 237 ----------RLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCGD 283

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  154 bits (392), Expect = 4e-43
 Identities = 63/269 (23%), Positives = 107/269 (39%), Gaps = 43/269 (15%)

Query: 319 QTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQK-PIHVAAQNNFPEVAQIFLRAHPSL 377
              L  A +   + + + LL+ GA+++  +++G   P+H A Q +  ++ ++ L  H + 
Sbjct: 6   NHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLL-RHGAD 64

Query: 378 VTATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEA-----TPLQLAAEGG 432
                K+G T   +AA+ GSV +++          +S    V E      T    AA  G
Sbjct: 65  PVLRKKNGATPFLLAAIAGSVKLLKLF--------LSKGADVNECDFYGFTAFMEAAVYG 116

Query: 433 HANVVRVLVKAGA----------SCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVY 482
               ++ L K GA                K G TA+  AA+ GH +VL+ +      +V 
Sbjct: 117 KVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVN 176

Query: 483 SK-KLGVTALHVAAYFGQADTVRE----LLSHVPGTVKSDPPTGASFLGELGSESGMTPL 537
           +   +G  AL  A        V      LL H           GA     +  E G TPL
Sbjct: 177 ACDNMGRNALIHALLSSDDSDVEAITHLLLDH-----------GADV--NVRGERGKTPL 223

Query: 538 HLAAYSGNENVVRLLLNSAGVQVDAQTQE 566
            LA    +  +V+ LL    ++++    +
Sbjct: 224 ILAVEKKHLGLVQRLLEQEHIEINDTDSD 252

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  148 bits (375), Expect = 1e-40
 Identities = 66/319 (20%), Positives = 116/319 (36%), Gaps = 62/319 (19%)

Query: 100 NKIGETPLHLASRNCKAEVVDLLIQFVQNISQEKVLEYVNSVNEDGASALHYACQVTKAE 159
                  L  A +N   ++V  L++   N++ ++         E G + LH A Q     
Sbjct: 2   AVEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQE--------EEGGWTPLHNAVQ----- 48

Query: 160 LIPITSKEDQKTVKLLLEAGADVSLQTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEIS 219
                    +  V+LLL  GAD  L+ K N  T F   A+AG+  +L   L +  G ++ 
Sbjct: 49  ------MSREDIVELLLRHGADPVLRKK-NGATPFLLAAIAGSVKLLKLFLSK--GADV- 98

Query: 220 KALNKQTSIGWTPLLIACNRGHMELV----------NTMLNNHARVDVFDQEGRSALHLA 269
              N+    G+T  + A   G ++ +          N         +   + G +AL  A
Sbjct: 99  ---NECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDA 155

Query: 270 AEHGYLKVSSGKSLKHSVMSFRLPPHNIIPNGFLVHDHAAVIDILTLRKQTPLHLAAEAG 329
           AE G+++V                         L+ +  A ++      +  L  A  + 
Sbjct: 156 AEKGHVEVLK----------------------ILLDEMGADVNACDNMGRNALIHALLSS 193

Query: 330 Q----LQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDG 385
                  +  LLLD GA ++   ++G+ P+ +A +     + Q  L      +  T  DG
Sbjct: 194 DDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDG 253

Query: 386 NTCAHIAAMQGSVGVIEEL 404
            T   +A       + E L
Sbjct: 254 KTALLLAVELKLKKIAELL 272

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  130 bits (329), Expect = 3e-34
 Identities = 64/268 (23%), Positives = 99/268 (36%), Gaps = 41/268 (15%)

Query: 10  RETPLHIAARVKDGDRCALMLLKSGAGPNLTN--------IAARVKDGDRCALMLLKSGA 61
             TPLH A ++   D    +LL+ GA P L          +AA          + L  GA
Sbjct: 39  GWTPLHNAVQMSRED-IVELLLRHGADPVLRKKNGATPFLLAAIAGSVK-LLKLFLSKGA 96

Query: 62  GPNLTTDDGQTPVHAAAKYGNLVTLQLLLE----------DGGDPMYKNKIGETPLHLAS 111
             N     G T    AA YG +  L+ L +             D     K G T L  A+
Sbjct: 97  DVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAA 156

Query: 112 RNCKAEVVDLLIQFVQNISQEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQKT 171
                EV+ +L+       +      VN+ +  G +AL +A   +         +     
Sbjct: 157 EKGHVEVLKILL------DEMGA--DVNACDNMGRNALIHALLSSDDS----DVEA---I 201

Query: 172 VKLLLEAGADVSLQTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWT 231
             LLL+ GADV+++ ++  +T         +  ++  +LEQ    EI    N   S G T
Sbjct: 202 THLLLDHGADVNVRGERG-KTPLILAVEKKHLGLVQRLLEQ-EHIEI----NDTDSDGKT 255

Query: 232 PLLIACNRGHMELVNTMLNNHARVDVFD 259
            LL+A      ++   +    A  D  D
Sbjct: 256 ALLLAVELKLKKIAELLCKRGASTDCGD 283

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  121 bits (306), Expect = 4e-31
 Identities = 46/193 (23%), Positives = 77/193 (39%), Gaps = 25/193 (12%)

Query: 382 TKDGNTCAHIAAMQGSVGVIEELMKFDRSGV-ISARNRVTEATPLQLAAEGGHANVVRVL 440
             + N     A     V ++++L++    G  ++ +      TPL  A +    ++V +L
Sbjct: 2   AVEDNHLLIKAVQNEDVDLVQQLLE---GGANVNFQEEEGGWTPLHNAVQMSREDIVELL 58

Query: 441 VKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSK-KLGVTALHVAAYFGQ 499
           ++ GA      K G T   LAA  G  ++L+   S  A +V      G TA   AA +G+
Sbjct: 59  LRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGA-DVNECDFYGFTAFMEAAVYGK 117

Query: 500 ADTVRELLSHVPGTVKSDPPTGA--------SFLGELGSESGMTPLHLAAYSGNENVVRL 551
              ++ L              GA            E   + G T L  AA  G+  V+++
Sbjct: 118 VKALKFLYKR-----------GANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKI 166

Query: 552 LLNSAGVQVDAQT 564
           LL+  G  V+A  
Sbjct: 167 LLDEMGADVNACD 179

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  119 bits (302), Expect = 2e-30
 Identities = 54/237 (22%), Positives = 89/237 (37%), Gaps = 37/237 (15%)

Query: 342 ASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVI 401
           A+++         +  A QN   ++ Q  L    ++     + G T  H A       ++
Sbjct: 1   AAVE-----DNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIV 55

Query: 402 EELMKFDRSGV-ISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHL 460
           E L++    G     R +   ATP  LAA  G   ++++ +  GA   + +  GFTA   
Sbjct: 56  ELLLR---HGADPVLRKK-NGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFME 111

Query: 461 AAQNGHNQVLE----------EMRSSKALNVYSKKLGVTALHVAAYFGQADTVRELLSHV 510
           AA  G  + L+            R +K      +K G TAL  AA  G  + ++ LL  +
Sbjct: 112 AAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEM 171

Query: 511 PGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNEN----VVRLLLNSAGVQVDAQ 563
                     GA          G   L  A  S +++    +  LLL   G  V+ +
Sbjct: 172 ----------GADV--NACDNMGRNALIHALLSSDDSDVEAITHLLL-DHGADVNVR 215

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 55.6 bits (135), Expect = 1e-08
 Identities = 20/103 (19%), Positives = 32/103 (31%), Gaps = 11/103 (10%)

Query: 11  ETPLHIAARVKDGDRC---ALMLLKSGAGPNLTN--------IAARVKDGDRCALMLLKS 59
              L  A    D         +LL  GA  N+          +A   K       +L + 
Sbjct: 183 RNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQE 242

Query: 60  GAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKI 102
               N T  DG+T +  A +       +LL + G      + +
Sbjct: 243 HIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCGDLV 285

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score =  160 bits (408), Expect = 6e-46
 Identities = 55/248 (22%), Positives = 98/248 (39%), Gaps = 23/248 (9%)

Query: 319 QTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLV 378
              +  A + G  + C+ L++ G  +   D +    +H AA NN  ++ + +  +  ++V
Sbjct: 10  TWDIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVK-YYISKGAIV 68

Query: 379 TATTKD-GNTCAHIAAMQGSVGVIEELMKFDRSGV-ISARNRVTEATPLQLAAEGGHANV 436
                D  +T  H A  QG + ++ +LMK    G   S  +     + + LAA+ GH ++
Sbjct: 69  DQLGGDLNSTPLHWATRQGHLSMVVQLMK---YGADPSLIDG-EGCSCIHLAAQFGHTSI 124

Query: 437 VRVLVKAGASCTDENKTGFTAVHLAAQNGHN-QVLEEMRSSKA-LNVYSKKLGVTALHVA 494
           V  L+  G      ++ G T +  AA   H+      + +    +N+  K    TALH A
Sbjct: 125 VAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWA 184

Query: 495 AYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVRLLLN 554
              G    +  LL             GA+   +  +  G + L LA    N  ++  L  
Sbjct: 185 VLAGNTTVISLLLEA-----------GANV--DAQNIKGESALDLAKQRKNVWMINHLQ- 230

Query: 555 SAGVQVDA 562
            A      
Sbjct: 231 EARQAKGY 238

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score =  157 bits (399), Expect = 1e-44
 Identities = 56/260 (21%), Positives = 101/260 (38%), Gaps = 30/260 (11%)

Query: 222 LNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVSSGK 281
           +          ++ A   G  E    ++     V   D+E  + LH AA +  + +    
Sbjct: 2   MTHIDDYSTWDIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVK-- 59

Query: 282 SLKHSVMSFRLPPHNIIPNGFLVHDHAAVIDILTL-RKQTPLHLAAEAGQLQVCKLLLDL 340
                               + +    A++D L      TPLH A   G L +   L+  
Sbjct: 60  --------------------YYI-SKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKY 98

Query: 341 GASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQG-SVG 399
           GA     D +G   IH+AAQ     +    + A    V    ++G T    AA +  SV 
Sbjct: 99  GADPSLIDGEGCSCIHLAAQFGHTSIVAYLI-AKGQDVDMMDQNGMTPLMWAAYRTHSVD 157

Query: 400 VIEELMKFDRSGV-ISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAV 458
               L+ F    V ++  ++  + T L  A   G+  V+ +L++AGA+   +N  G +A+
Sbjct: 158 PTRLLLTF---NVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESAL 214

Query: 459 HLAAQNGHNQVLEEMRSSKA 478
            LA Q  +  ++  ++ ++ 
Sbjct: 215 DLAKQRKNVWMINHLQEARQ 234

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score =  152 bits (388), Expect = 5e-43
 Identities = 60/312 (19%), Positives = 103/312 (33%), Gaps = 84/312 (26%)

Query: 64  NLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVVDLLI 123
               D     +  A +YG     + L+E G D    +K   T LH A+ N + ++V   I
Sbjct: 3   THIDDYSTWDIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYI 62

Query: 124 QFVQNISQEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQK-TVKLLLEAGADV 182
                + Q           +  ++ LH+A            +++     V  L++ GAD 
Sbjct: 63  SKGAIVDQLG--------GDLNSTPLHWA------------TRQGHLSMVVQLMKYGADP 102

Query: 183 SLQTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIACNRGHM 242
                                                   +     G + + +A   GH 
Sbjct: 103 ----------------------------------------SLIDGEGCSCIHLAAQFGHT 122

Query: 243 ELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVSSGKSLKHSVMSFRLPPHNIIPNGF 302
            +V  ++     VD+ DQ G + L  AA                        H++ P   
Sbjct: 123 SIVAYLIAKGQDVDMMDQNGMTPLMWAAYRT---------------------HSVDPTRL 161

Query: 303 LVHDHAAVIDILT-LRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQN 361
           L+      +++     K T LH A  AG   V  LLL+ GA++DA + +G+  + +A Q 
Sbjct: 162 LL-TFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDLAKQR 220

Query: 362 NFPEVAQIFLRA 373
               +      A
Sbjct: 221 KNVWMINHLQEA 232

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score =  141 bits (358), Expect = 8e-39
 Identities = 59/223 (26%), Positives = 91/223 (40%), Gaps = 19/223 (8%)

Query: 344 IDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIEE 403
           +   DD     I  A Q    E  +  +      V    K+  T  H AA+   + +++ 
Sbjct: 2   MTHIDDYSTWDIVKATQYGIYERCRELV-EAGYDVRQPDKENVTLLHWAAINNRIDLVKY 60

Query: 404 LMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQ 463
            +   +  ++        +TPL  A   GH ++V  L+K GA  +  +  G + +HLAAQ
Sbjct: 61  YI--SKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQ 118

Query: 464 NGHNQVLEEMRSSKALNVYSK-KLGVTALHVAAYFG-QADTVRELLSHVPGTVKSDPPTG 521
            GH  ++  + +    +V    + G+T L  AAY     D  R LL+             
Sbjct: 119 FGHTSIVAYLIAKGQ-DVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTF-----------N 166

Query: 522 ASFLGELGSESGMTPLHLAAYSGNENVVRLLLNSAGVQVDAQT 564
            S +         T LH A  +GN  V+ LLL  AG  VDAQ 
Sbjct: 167 VS-VNLGDKYHKNTALHWAVLAGNTTVISLLL-EAGANVDAQN 207

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score =  137 bits (349), Expect = 1e-37
 Identities = 55/318 (17%), Positives = 105/318 (33%), Gaps = 81/318 (25%)

Query: 137 YVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGADVSLQTKQNHETAFHY 196
           ++  +++     +  A Q               +  + L+EAG DV              
Sbjct: 1   HMTHIDDYSTWDIVKATQ-----------YGIYERCRELVEAGYDV-------------- 35

Query: 197 CAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVD 256
                                      +      T L  A     ++LV   ++  A VD
Sbjct: 36  --------------------------RQPDKENVTLLHWAAINNRIDLVKYYISKGAIVD 69

Query: 257 VFDQE-GRSALHLAAEHGYLKVSSGKSLKHSVMSFRLPPHNIIPNGFLVHDHAAVIDILT 315
               +   + LH A   G+L +                         L+  + A   ++ 
Sbjct: 70  QLGGDLNSTPLHWATRQGHLSMVV----------------------QLM-KYGADPSLID 106

Query: 316 LRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQN-NFPEVAQIFLRAH 374
               + +HLAA+ G   +   L+  G  +D  D  G  P+  AA   +  +  ++ L  +
Sbjct: 107 GEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFN 166

Query: 375 PSLVTATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGV-ISARNRVTEATPLQLAAEGGH 433
            S+        NT  H A + G+  VI  L++   +G  + A+N     + L LA +  +
Sbjct: 167 VSVNLGDKYHKNTALHWAVLAGNTTVISLLLE---AGANVDAQNI-KGESALDLAKQRKN 222

Query: 434 ANVVRVLVKAGASCTDEN 451
             ++  L +A  +   +N
Sbjct: 223 VWMINHLQEARQAKGYDN 240

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score =  134 bits (341), Expect = 2e-36
 Identities = 47/276 (17%), Positives = 90/276 (32%), Gaps = 69/276 (25%)

Query: 11  ETPLHIAARVKDGDRCALMLLKSGAGPNLTNIAARVKDGDRCALMLLKSGAGPNLTTDDG 70
              +  A +                      I  R +        L+++G        + 
Sbjct: 10  TWDIVKATQ--------------------YGIYERCR-------ELVEAGYDVRQPDKEN 42

Query: 71  QTPVHAAAKYGNLVTLQLLLEDGGDPMYK-NKIGETPLHLASRNCKAEVVDLLIQFVQNI 129
            T +H AA    +  ++  +  G         +  TPLH A+R     +V  L+++  + 
Sbjct: 43  VTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADP 102

Query: 130 SQEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGADVSLQTKQN 189
                    + ++ +G S +H A Q                 V  L+  G DV +  + N
Sbjct: 103 ---------SLIDGEGCSCIHLAAQ-----------FGHTSIVAYLIAKGQDVDMMDQ-N 141

Query: 190 HETAFHYCAVAGNNDVLTGMLEQMSGTEISKAL-------NKQTSI-GWTPLLIACNRGH 241
             T   + A   ++             + ++ L       N        T L  A   G+
Sbjct: 142 GMTPLMWAAYRTHS------------VDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGN 189

Query: 242 MELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKV 277
             +++ +L   A VD  + +G SAL LA +   + +
Sbjct: 190 TTVISLLLEAGANVDAQNIKGESALDLAKQRKNVWM 225

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score =  107 bits (270), Expect = 1e-26
 Identities = 50/258 (19%), Positives = 84/258 (32%), Gaps = 81/258 (31%)

Query: 11  ETPLHIAARVKDGDRCALMLLKSGAGPNLTNIAARVKDGDRCALM-------------LL 57
            T LH AA   +        +  GA      +     D +   L              L+
Sbjct: 43  VTLLHWAAI-NNRIDLVKYYISKGA-----IVDQLGGDLNSTPLHWATRQGHLSMVVQLM 96

Query: 58  KSGAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNC-KA 116
           K GA P+L   +G + +H AA++G+   +  L+  G D    ++ G TPL  A+      
Sbjct: 97  KYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSV 156

Query: 117 EVVDLLIQFVQNISQEKVLEYVNSV-NEDGASALHYACQVTKAELIPITSKEDQKTVKLL 175
           +   LL+ F  ++         N        +ALH+A               +   + LL
Sbjct: 157 DPTRLLLTFNVSV---------NLGDKYHKNTALHWAVL-----------AGNTTVISLL 196

Query: 176 LEAGADVSLQTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLI 235
           LEAGA+V                                        + Q   G + L +
Sbjct: 197 LEAGANV----------------------------------------DAQNIKGESALDL 216

Query: 236 ACNRGHMELVNTMLNNHA 253
           A  R ++ ++N +     
Sbjct: 217 AKQRKNVWMINHLQEARQ 234

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 89.8 bits (224), Expect = 2e-20
 Identities = 44/188 (23%), Positives = 68/188 (36%), Gaps = 44/188 (23%)

Query: 11  ETPLHIAAR------VKDGDRCALMLLKSGAGPNLTN--------IAARVKDGDRCALML 56
            TPLH A R      V         L+K GA P+L +        +AA+          L
Sbjct: 77  STPLHWATRQGHLSMVV-------QLMKYGADPSLIDGEGCSCIHLAAQ-FGHTSIVAYL 128

Query: 57  LKSGAGPNLTTDDGQTPVHAAAKYGN-LVTLQLLLEDGGDPMYKNKI-GETPLHLASRNC 114
           +  G   ++   +G TP+  AA   + +   +LLL         +K    T LH A    
Sbjct: 129 IAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAG 188

Query: 115 KAEVVDLLIQFVQNISQEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKL 174
              V+ LL++     +       V++ N  G SAL  A Q           +++   +  
Sbjct: 189 NTTVISLLLE--AGAN-------VDAQNIKGESALDLAKQ-----------RKNVWMINH 228

Query: 175 LLEAGADV 182
           L EA    
Sbjct: 229 LQEARQAK 236

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 60.9 bits (149), Expect = 1e-10
 Identities = 16/81 (19%), Positives = 28/81 (34%), Gaps = 14/81 (17%)

Query: 487 GVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNE 546
               +  A  +G  +  REL+             G         +  +T LH AA +   
Sbjct: 9   STWDIVKATQYGIYERCRELVEA-----------GYDV--RQPDKENVTLLHWAAINNRI 55

Query: 547 NVVRLLLNSAGVQVDAQTQEN 567
           ++V+  + S G  VD    + 
Sbjct: 56  DLVKYYI-SKGAIVDQLGGDL 75

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 57.4 bits (140), Expect = 2e-09
 Identities = 21/103 (20%), Positives = 33/103 (32%), Gaps = 18/103 (17%)

Query: 11  ETPLHIAARVKDGDRCALMLLKSGAGPNLTNIAARVKDGDRCALM-------------LL 57
            TPL  AA          +LL         ++    K     AL              LL
Sbjct: 143 MTPLMWAAYRTHSVDPTRLLLTFNV-----SVNLGDKYHKNTALHWAVLAGNTTVISLLL 197

Query: 58  KSGAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKN 100
           ++GA  +     G++ +  A +  N+  +  L E      Y N
Sbjct: 198 EAGANVDAQNIKGESALDLAKQRKNVWMINHLQEARQAKGYDN 240

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 40.1 bits (95), Expect = 8e-04
 Identities = 9/37 (24%), Positives = 13/37 (35%), Gaps = 1/37 (2%)

Query: 531 ESGMTPLHLAAYSGNENVVRLLLNSAGVQVDAQTQEN 567
           +     +  A   G     R L+  AG  V    +EN
Sbjct: 7   DYSTWDIVKATQYGIYERCRELV-EAGYDVRQPDKEN 42

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score =  159 bits (405), Expect = 2e-45
 Identities = 64/256 (25%), Positives = 105/256 (41%), Gaps = 28/256 (10%)

Query: 259 DQEGRSALHLAAEHGYLKVSSGKSLKHSVMSFRLPPHNIIPNGFLVHDHAAVIDILTLRK 318
           D++G + LH+A   G L                   H ++    L       +DI    +
Sbjct: 6   DEDGDTPLHIAVVQGNLPAV----------------HRLVN---LFQQGGRELDIYNNLR 46

Query: 319 QTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLR---AHP 375
           QTPLHLA       V +LL+  GAS  A D  GQ   H+A ++  P   +  L       
Sbjct: 47  QTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGT 106

Query: 376 SLVTATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGV-ISARNRVTEATPLQLAAEGGHA 434
             + A   DG T  H+A        ++ L++    G  I A +  +  +PL  A E    
Sbjct: 107 LDLEARNYDGLTALHVAVNTECQETVQLLLE---RGADIDAVDIKSGRSPLIHAVENNSL 163

Query: 435 NVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSK-KLGVTALHV 493
           ++V++L++ GA+   +  +G +A+H A+  G   ++  +  S A +   K     T L V
Sbjct: 164 SMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGA-DSSLKNCHNDTPLMV 222

Query: 494 AAYFGQADTVRELLSH 509
           A      D +R   + 
Sbjct: 223 ARSRRVIDILRGKATR 238

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score =  154 bits (392), Expect = 1e-43
 Identities = 63/313 (20%), Positives = 102/313 (32%), Gaps = 84/313 (26%)

Query: 64  NLTTDDGQTPVHAAAKYGNLVTLQLLLED----GGDPMYKNKIGETPLHLASRNCKAEVV 119
               +DG TP+H A   GNL  +  L+      G +    N + +TPLHLA       VV
Sbjct: 3   TRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVV 62

Query: 120 DLLIQFVQNISQEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEAG 179
            LL+    +           +++  G +A H AC+                 ++ LL++ 
Sbjct: 63  RLLVTAGASP---------MALDRHGQTAAHLACE-----------HRSPTCLRALLDSA 102

Query: 180 ADVSLQTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIACNR 239
           A                       D+                   +   G T L +A N 
Sbjct: 103 APG-------------------TLDL-----------------EARNYDGLTALHVAVNT 126

Query: 240 GHMELVNTMLNNHARVDVFDQE-GRSALHLAAEHGYLKVSSGKSLKHSVMSFRLPPHNII 298
              E V  +L   A +D  D + GRS L  A E+  L +                     
Sbjct: 127 ECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQ------------------- 167

Query: 299 PNGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVA 358
               L+  H A ++       + LH A+  G L + + L+  GA     +     P+ VA
Sbjct: 168 ---LLL-QHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVA 223

Query: 359 AQNNFPEVAQIFL 371
                 ++ +   
Sbjct: 224 RSRRVIDILRGKA 236

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score =  154 bits (391), Expect = 2e-43
 Identities = 59/244 (24%), Positives = 101/244 (41%), Gaps = 24/244 (9%)

Query: 319 QTPLHLAAEAGQLQVCKLLLDL----GASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAH 374
            TPLH+A   G L     L++L    G  +D  ++  Q P+H+A     P V ++ +   
Sbjct: 10  DTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLV-TA 68

Query: 375 PSLVTATTKDGNTCAHIAAMQGSVGVIEELMKF--DRSGVISARNRVTEATPLQLAAEGG 432
            +   A  + G T AH+A    S   +  L+      +  + ARN     T L +A    
Sbjct: 69  GASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNY-DGLTALHVAVNTE 127

Query: 433 HANVVRVLVKAGASCTDEN-KTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSK-KLGVTA 490
               V++L++ GA     + K+G + +  A +N    +++ +    A NV ++   G +A
Sbjct: 128 CQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGA-NVNAQMYSGSSA 186

Query: 491 LHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVR 550
           LH A+  G    VR L+             GA     L +    TPL +A      +++R
Sbjct: 187 LHSASGRGLLPLVRTLVRS-----------GADS--SLKNCHNDTPLMVARSRRVIDILR 233

Query: 551 LLLN 554
               
Sbjct: 234 GKAT 237

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score =  149 bits (379), Expect = 8e-42
 Identities = 57/267 (21%), Positives = 104/267 (38%), Gaps = 45/267 (16%)

Query: 11  ETPLHIAARVKDGDRCALMLLKSGAGPNLTNIAARVKDGDRCALMLLKSGAGPNLTTDDG 70
           +TPLHIA    +       L+                       +  + G   ++  +  
Sbjct: 10  DTPLHIAVVQGNLP-AVHRLVN----------------------LFQQGGRELDIYNNLR 46

Query: 71  QTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVVDLLIQFVQNIS 130
           QTP+H A        ++LL+  G  PM  ++ G+T  HLA  +     +  L+      +
Sbjct: 47  QTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGT 106

Query: 131 QEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGADVSLQTKQNH 190
            +     + + N DG +ALH A              E Q+TV+LLLE GAD+     ++ 
Sbjct: 107 LD-----LEARNYDGLTALHVAVN-----------TECQETVQLLLERGADIDAVDIKSG 150

Query: 191 ETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIACNRGHMELVNTMLN 250
            +   +     +  ++  +L+   G  +    N Q   G + L  A  RG + LV T++ 
Sbjct: 151 RSPLIHAVENNSLSMVQLLLQH--GANV----NAQMYSGSSALHSASGRGLLPLVRTLVR 204

Query: 251 NHARVDVFDQEGRSALHLAAEHGYLKV 277
           + A   + +    + L +A     + +
Sbjct: 205 SGADSSLKNCHNDTPLMVARSRRVIDI 231

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score =  136 bits (345), Expect = 6e-37
 Identities = 58/353 (16%), Positives = 105/353 (29%), Gaps = 121/353 (34%)

Query: 99  KNKIGETPLHLASRNCKAEVVDLLIQFVQNISQEKVLEYVNSVNEDGASALHYACQVTKA 158
            ++ G+TPLH+A        V  L+   Q   +E     ++  N    + LH A      
Sbjct: 5   ADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRE-----LDIYNNLRQTPLHLAVI---- 55

Query: 159 ELIPITSKEDQKTVKLLLEAGADVSLQTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEI 218
                T       V+LL+ AGA                                      
Sbjct: 56  ----TTLPS---VVRLLVTAGASP------------------------------------ 72

Query: 219 SKALNKQTSIGWTPLLIACNRGHMELVNTMLNNHAR----VDVFDQEGRSALHLAAEHGY 274
                     G T   +AC       +  +L++ A     ++  + +G +ALH+A     
Sbjct: 73  ----MALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTEC 128

Query: 275 LKVSSGKSLKHSVMSFRLPPHNIIPNGFLVHDHAAVIDILTLRK-QTPLHLAAEAGQLQV 333
            +                          L+ +  A ID + ++  ++PL  A E   L +
Sbjct: 129 QETVQ----------------------LLL-ERGADIDAVDIKSGRSPLIHAVENNSLSM 165

Query: 334 CKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAA 393
            +LLL  GA+++A    G   +H A+      + +  +R   +  +      +T      
Sbjct: 166 VQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVR-SGADSSLKNCHNDT------ 218

Query: 394 MQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGAS 446
                                         PL +A      +++R      AS
Sbjct: 219 ------------------------------PLMVARSRRVIDILRGKATRPAS 241

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score =  129 bits (327), Expect = 2e-34
 Identities = 47/229 (20%), Positives = 77/229 (33%), Gaps = 25/229 (10%)

Query: 344 IDATDDQGQKPIHVAAQNNFPEVAQI---FLRAHPSLVTATTKDGNTCAHIAAMQGSVGV 400
               D+ G  P+H+A                +     +        T  H+A +     V
Sbjct: 2   ATRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSV 61

Query: 401 IEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTD----ENKTGFT 456
           +  L+         A +R    T   LA E      +R L+ + A  T      N  G T
Sbjct: 62  VRLLV--TAGASPMALDR-HGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLT 118

Query: 457 AVHLAAQNGHNQVLEEMRSSKA-LNVYSKKLGVTALHVAAYFGQADTVRELLSHVPGTVK 515
           A+H+A      + ++ +    A ++    K G + L  A        V+ LL H      
Sbjct: 119 ALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQH------ 172

Query: 516 SDPPTGASFLGELGSESGMTPLHLAAYSGNENVVRLLLNSAGVQVDAQT 564
                GA+        SG + LH A+  G   +VR L+  +G     + 
Sbjct: 173 -----GANV--NAQMYSGSSALHSASGRGLLPLVRTLV-RSGADSSLKN 213

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score =  119 bits (301), Expect = 6e-31
 Identities = 63/194 (32%), Positives = 97/194 (50%), Gaps = 20/194 (10%)

Query: 377 LVTATTKDGNTCAHIAAMQGSVGVIEELMK-FDRSGV-ISARNRVTEATPLQLAAEGGHA 434
           + T   +DG+T  HIA +QG++  +  L+  F + G  +   N     TPL LA      
Sbjct: 1   MATRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNN-LRQTPLHLAVITTLP 59

Query: 435 NVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKA---LNVYSK-KLGVTA 490
           +VVR+LV AGAS    ++ G TA HLA ++     L  +  S A   L++ ++   G+TA
Sbjct: 60  SVVRLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTA 119

Query: 491 LHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVR 550
           LHVA      +TV+ LL             GA  +  +  +SG +PL  A  + + ++V+
Sbjct: 120 LHVAVNTECQETVQLLLER-----------GAD-IDAVDIKSGRSPLIHAVENNSLSMVQ 167

Query: 551 LLLNSAGVQVDAQT 564
           LLL   G  V+AQ 
Sbjct: 168 LLL-QHGANVNAQM 180

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 86.0 bits (214), Expect = 3e-19
 Identities = 32/126 (25%), Positives = 52/126 (41%), Gaps = 19/126 (15%)

Query: 11  ETPLHIAARVKDGDRCALMLLKSGAGPNLTNIAARVKDGDRCALM-------------LL 57
            T LH+A    +      +LL+ GA  +  +I    K G R  L+             LL
Sbjct: 117 LTALHVAVN-TECQETVQLLLERGADIDAVDI----KSG-RSPLIHAVENNSLSMVQLLL 170

Query: 58  KSGAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAE 117
           + GA  N     G + +H+A+  G L  ++ L+  G D   KN   +TPL +A      +
Sbjct: 171 QHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVID 230

Query: 118 VVDLLI 123
           ++    
Sbjct: 231 ILRGKA 236

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 52.5 bits (127), Expect = 8e-08
 Identities = 19/94 (20%), Positives = 31/94 (32%), Gaps = 10/94 (10%)

Query: 8   KLRETPLHIAARVKDGDRCALMLLKSGAGPNLTN--------IAARVKDGDRCALMLLKS 59
           K   +PL  A    +      +LL+ GA  N            A+  +        L++S
Sbjct: 148 KSGRSPLIHAVE-NNSLSMVQLLLQHGANVNAQMYSGSSALHSASG-RGLLPLVRTLVRS 205

Query: 60  GAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDG 93
           GA  +L      TP+  A     +  L+      
Sbjct: 206 GADSSLKNCHNDTPLMVARSRRVIDILRGKATRP 239

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score =  152 bits (388), Expect = 3e-43
 Identities = 56/240 (23%), Positives = 88/240 (36%), Gaps = 20/240 (8%)

Query: 319 QTPLHLAAEAGQLQ-VCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLR--AHP 375
             PLH A    +   V +LL    + +   D  G+ P+H +      E+    L    + 
Sbjct: 3   NYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENV 62

Query: 376 SLVTATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHAN 435
           +L       G T  HIA   G++ V++ L        ++        T L LA       
Sbjct: 63  NLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITN-QGVTCLHLAVGKKWFE 121

Query: 436 VVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSK-KLGVTALHVA 494
           V + L++ GAS   ++K     +H AA  G  +++E +       V  + K G T L  A
Sbjct: 122 VSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHA 181

Query: 495 AYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVRLLLN 554
              G  D    L+             GA +  +L    G     +A    NE V +  LN
Sbjct: 182 LAEGHGDAAVLLVEKY----------GAEY--DLVDNKGAKAEDVAL---NEQVKKFFLN 226

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score =  147 bits (373), Expect = 5e-41
 Identities = 60/274 (21%), Positives = 99/274 (36%), Gaps = 53/274 (19%)

Query: 102 IGETPLHLASR-NCKAEVVDLLIQFVQNISQEKVLEYVNSVNEDGASALHYACQVTKAEL 160
           +   PLH A   N   +V +LL      +            ++DG   LH++        
Sbjct: 1   MSNYPLHQACMENEFFKVQELLHSKPSLL---------LQKDQDGRIPLHWSVS------ 45

Query: 161 IPITSKEDQKTVKLLLEAGADVSLQTKQNH--ETAFHYCAVAGNNDVLTGMLEQMSGTEI 218
                 +  +    LL    +V+L    +    T FH     GN +V+  + ++    ++
Sbjct: 46  -----FQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDL 100

Query: 219 SKALNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVS 278
               NK T+ G T L +A  +   E+   ++ N A V + D+  +  LH AA  G LK+ 
Sbjct: 101 ----NKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLI 156

Query: 279 SGKSLKHSVMSFRLPPHNIIPNGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLL 338
                                   L     + ++    +  TPL  A   G      LL+
Sbjct: 157 E----------------------LLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLV 194

Query: 339 D-LGASIDATDDQGQKPIHVAAQNNFPEVAQIFL 371
           +  GA  D  D++G K   VA       V + FL
Sbjct: 195 EKYGAEYDLVDNKGAKAEDVALNEQ---VKKFFL 225

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score =  132 bits (336), Expect = 7e-36
 Identities = 49/256 (19%), Positives = 82/256 (32%), Gaps = 36/256 (14%)

Query: 262 GRSALHLAAEHGYLKVSSGKSLKHSVMSFRLPPHNIIPNGFLVHDHAAVIDILTLRKQTP 321
               LH A                 V               L     +++       + P
Sbjct: 2   SNYPLHQACMENEFFK---------VQEL------------LH-SKPSLLLQKDQDGRIP 39

Query: 322 LHLAAEAGQLQVCKLLLDLGASI---DATDDQGQKPIHVAAQNNFPEVAQIFL-RAHPSL 377
           LH +      ++   LL    ++   D  DD G  P H+A      EV +    R     
Sbjct: 40  LHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPD 99

Query: 378 VTATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGV-ISARNRVTEATPLQLAAEGGHANV 436
           +   T  G TC H+A  +    V + L++   +G  +  +++     PL  AA  G   +
Sbjct: 100 LNKITNQGVTCLHLAVGKKWFEVSQFLIE---NGASVRIKDK-FNQIPLHRAASVGSLKL 155

Query: 437 VRVLVKAGASCTDE-NKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSK-KLGVTALHVA 494
           + +L   G S  +  +K G+T +  A   GH      +              G  A  VA
Sbjct: 156 IELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVA 215

Query: 495 AYFGQADTVRELLSHV 510
                    +  L++V
Sbjct: 216 L---NEQVKKFFLNNV 228

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score =  132 bits (335), Expect = 9e-36
 Identities = 55/275 (20%), Positives = 88/275 (32%), Gaps = 64/275 (23%)

Query: 11  ETPLHIAARVKDGDRCALMLLKSGAGPNLTNIAARVKDGDRCALMLLKSGAGPNLTTDDG 70
             PLH A    +  +   +L    +     +                           DG
Sbjct: 3   NYPLHQACMENEFFKVQELLHSKPSLLLQKD--------------------------QDG 36

Query: 71  QTPVHAAAKYGNLVTLQLLLEDGGDP---MYKNKIGETPLHLASRNCKAEVVDLLIQFVQ 127
           + P+H +  +        LL    +     Y +  G TP H+A      EVV  L     
Sbjct: 37  RIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPL 96

Query: 128 NISQEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGADVSLQTK 187
                     +N +   G + LH A             K+  +  + L+E GA V ++ K
Sbjct: 97  KPD-------LNKITNQGVTCLHLAVG-----------KKWFEVSQFLIENGASVRIKDK 138

Query: 188 QNHETAFHYCAVAGNNDVLTGMLEQMSGTE--ISK---ALNKQTSIGWTPLLIACNRGHM 242
             ++   H  A  G+  +           E        A+N Q   GWTPL  A   GH 
Sbjct: 139 -FNQIPLHRAASVGSLKL----------IELLCGLGKSAVNWQDKQGWTPLFHALAEGHG 187

Query: 243 ELVNTMLNNH-ARVDVFDQEGRSALHLAAEHGYLK 276
           +    ++  + A  D+ D +G  A  +A      K
Sbjct: 188 DAAVLLVEKYGAEYDLVDNKGAKAEDVALNEQVKK 222

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score =  129 bits (326), Expect = 2e-34
 Identities = 48/221 (21%), Positives = 80/221 (36%), Gaps = 24/221 (10%)

Query: 351 GQKPIHVAAQ-NNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIEELMKFDR 409
              P+H A   N F +V ++   + PSL+    +DG    H +    +  +   L+    
Sbjct: 2   SNYPLHQACMENEFFKVQELLH-SKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLS--- 57

Query: 410 SGV-ISARNRVTEA--TPLQLAAEGGHANVVRVLV--KAGASCTDENKTGFTAVHLAAQN 464
               ++  +   ++  TP  +A   G+  VV+ L               G T +HLA   
Sbjct: 58  KMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGK 117

Query: 465 GHNQVLEEMRSSKALNVYSK-KLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGAS 523
              +V + +  + A +V  K K     LH AA  G    +  L              G S
Sbjct: 118 KWFEVSQFLIENGA-SVRIKDKFNQIPLHRAASVGSLKLIELLCGL-----------GKS 165

Query: 524 FLGELGSESGMTPLHLAAYSGNENVVRLLLNSAGVQVDAQT 564
            +     + G TPL  A   G+ +   LL+   G + D   
Sbjct: 166 AVNW-QDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVD 205

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score =  128 bits (325), Expect = 3e-34
 Identities = 54/284 (19%), Positives = 89/284 (31%), Gaps = 66/284 (23%)

Query: 191 ETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIACNRGHMELVNTMLN 250
               H   +      +  +L     + +     ++   G  PL  + +    E+ + +L+
Sbjct: 3   NYPLHQACMENEFFKVQELLHS-KPSLL----LQKDQDGRIPLHWSVSFQAHEITSFLLS 57

Query: 251 NHARV---DVFDQEGRSALHLAAEHGYLKVSSGKSLKHSVMSFRLPPHNIIPNGFLVHDH 307
               V   D  D  G +  H+A   G L+V   KSL                        
Sbjct: 58  KMENVNLDDYPDDSGWTPFHIACSVGNLEVV--KSL-------------------YDRPL 96

Query: 308 AAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVA 367
              ++ +T +  T LHLA      +V + L++ GAS+   D   Q P+H AA     ++ 
Sbjct: 97  KPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLI 156

Query: 368 QIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQL 427
           ++      S V    K G                                     TPL  
Sbjct: 157 ELLCGLGKSAVNWQDKQGW------------------------------------TPLFH 180

Query: 428 AAEGGHANVVRVLV-KAGASCTDENKTGFTAVHLAAQNGHNQVL 470
           A   GH +   +LV K GA     +  G  A  +A      +  
Sbjct: 181 ALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALNEQVKKFF 224

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 52.8 bits (128), Expect = 6e-08
 Identities = 16/83 (19%), Positives = 25/83 (30%), Gaps = 15/83 (18%)

Query: 486 LGVTALHVAAYFGQADTVRELL-SHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSG 544
           +    LH A    +   V+ELL S             +        + G  PLH +    
Sbjct: 1   MSNYPLHQACMENEFFKVQELLHSK-----------PSLL--LQKDQDGRIPLHWSVSFQ 47

Query: 545 NENVVRLLLNSAGVQVDAQTQEN 567
              +   LL S    V+     +
Sbjct: 48  AHEITSFLL-SKMENVNLDDYPD 69

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score =  152 bits (385), Expect = 6e-43
 Identities = 35/250 (14%), Positives = 69/250 (27%), Gaps = 33/250 (13%)

Query: 218 ISKALNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKV 277
           +SK   K    G   +  A         + +      +        +        G   +
Sbjct: 1   MSKPPPKPVKPGQVKVFRALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSKGRTGL 60

Query: 278 SSGKSLKHSVMSFRLPPHNIIPNGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLL 337
                                         +  +         PLH AA+ G L   +  
Sbjct: 61  I----------------------------PSNYVAEQAESIDNPLHEAAKRGNLSWLREC 92

Query: 338 LDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGS 397
           LD    ++  D  G   ++ A      ++ ++        +    K G+T  H AA +G 
Sbjct: 93  LDNRVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAAWKGY 152

Query: 398 VGVIEELMKFDRSGV-ISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFT 456
             +++ L+     G     RN   +     +A     A++++      A  T  N   + 
Sbjct: 153 ADIVQLLLA---KGARTDLRNI-EKKLAFDMATNAACASLLKKKQGTDAVRTLSNAEDYL 208

Query: 457 AVHLAAQNGH 466
               +    H
Sbjct: 209 DDEDSDLEHH 218

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score =  141 bits (357), Expect = 7e-39
 Identities = 43/302 (14%), Positives = 78/302 (25%), Gaps = 89/302 (29%)

Query: 61  AGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVVD 120
             P      GQ  V  A       T   L  + GD +Y   + +T     +   +  ++ 
Sbjct: 3   KPPPKPVKPGQVKVFRALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSKGRTGLIP 62

Query: 121 LLIQFVQNISQEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGA 180
                            V    E   + LH A +           + +   ++  L+   
Sbjct: 63  SNY--------------VAEQAESIDNPLHEAAK-----------RGNLSWLRECLDNRV 97

Query: 181 DVSLQTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIACNRG 240
            V                                        N     G T L  AC+ G
Sbjct: 98  GV----------------------------------------NGLDKAGSTALYWACHGG 117

Query: 241 HMELVNTMLNNH-ARVDVFDQEGRSALHLAAEHGYLKVSSGKSLKHSVMSFRLPPHNIIP 299
           H ++V  +       ++  ++ G +ALH AA  GY  +                      
Sbjct: 118 HKDIVEMLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQ-------------------- 157

Query: 300 NGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAA 359
              L+    A  D+  + K+    +A  A    + K      A    ++ +       + 
Sbjct: 158 --LLL-AKGARTDLRNIEKKLAFDMATNAACASLLKKKQGTDAVRTLSNAEDYLDDEDSD 214

Query: 360 QN 361
             
Sbjct: 215 LE 216

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score =  122 bits (309), Expect = 3e-32
 Identities = 40/249 (16%), Positives = 73/249 (29%), Gaps = 57/249 (22%)

Query: 319 QTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLV 378
           Q  +  A    + +    L      I    D                +         + V
Sbjct: 13  QVKVFRALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSKGRTGLI------PSNYV 66

Query: 379 TATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVR 438
               +  +                                     PL  AA+ G+ + +R
Sbjct: 67  AEQAESIDN------------------------------------PLHEAAKRGNLSWLR 90

Query: 439 VLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSK-KLGVTALHVAAYF 497
             +         +K G TA++ A   GH  ++E + +   + +  + KLG TALH AA+ 
Sbjct: 91  ECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAAWK 150

Query: 498 GQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVRLLLNSAG 557
           G AD V+ LL+            GA    +L +        +A  +   ++++       
Sbjct: 151 GYADIVQLLLAK-----------GART--DLRNIEKKLAFDMATNAACASLLKKKQ-GTD 196

Query: 558 VQVDAQTQE 566
                   E
Sbjct: 197 AVRTLSNAE 205

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score =  120 bits (304), Expect = 2e-31
 Identities = 42/272 (15%), Positives = 71/272 (26%), Gaps = 72/272 (26%)

Query: 11  ETPLHIAARVKDGDRCALMLLKSGAGPNLTNIAARVKDGD-------RCALMLLKSGAGP 63
           +  +  A    +       L          +I       D             L      
Sbjct: 13  QVKVFRALYTFEPR-TPDELYIEEG-----DIIYITDMSDTNWWKGTSKGRTGLIPSNYV 66

Query: 64  NLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVVDLLI 123
               +    P+H AAK GNL  L+  L++       +K G T L+ A      ++V++L 
Sbjct: 67  AEQAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEML- 125

Query: 124 QFVQNISQEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGADVS 183
                 +Q  +   +N  N+ G +ALH A             K     V+LLL  GA   
Sbjct: 126 -----FTQPNIE--LNQQNKLGDTALHAAAW-----------KGYADIVQLLLAKGART- 166

Query: 184 LQTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIACNRGHME 243
                                                  + +         +A N     
Sbjct: 167 ---------------------------------------DLRNIEKKLAFDMATNAACAS 187

Query: 244 LVNTMLNNHARVDVFDQEGRSALHLAAEHGYL 275
           L+       A   + + E       +    + 
Sbjct: 188 LLKKKQGTDAVRTLSNAEDYLDDEDSDLEHHH 219

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 98.5 bits (246), Expect = 1e-23
 Identities = 40/188 (21%), Positives = 64/188 (34%), Gaps = 23/188 (12%)

Query: 380 ATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRV 439
              K G      A         +EL      G I         T        G   ++  
Sbjct: 7   KPVKPGQVKVFRALYTFEPRTPDELYI--EEGDIIYITD-MSDTNWWKGTSKGRTGLIP- 62

Query: 440 LVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSK-KLGVTALHVAAYFG 498
                    ++ ++    +H AA+ G+   L E   ++   V    K G TAL+ A + G
Sbjct: 63  ----SNYVAEQAESIDNPLHEAAKRGNLSWLRECLDNRV-GVNGLDKAGSTALYWACHGG 117

Query: 499 QADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVRLLLNSAGV 558
             D V  L +                     ++ G T LH AA+ G  ++V+LLL + G 
Sbjct: 118 HKDIVEMLFTQP----------NIEL--NQQNKLGDTALHAAAWKGYADIVQLLL-AKGA 164

Query: 559 QVDAQTQE 566
           + D +  E
Sbjct: 165 RTDLRNIE 172

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 57.3 bits (139), Expect = 2e-09
 Identities = 16/106 (15%), Positives = 23/106 (21%), Gaps = 27/106 (25%)

Query: 8   KLRETPLHIAARVKDGDRCALMLLKSGAGPNLTNIAARVKDGDRCALMLLKSGAGPNLTT 67
           KL +T LH AA                            K       +LL  GA  +L  
Sbjct: 138 KLGDTALHAAAW---------------------------KGYADIVQLLLAKGARTDLRN 170

Query: 68  DDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRN 113
            + +     A        L+            N         +   
Sbjct: 171 IEKKLAFDMATNAACASLLKKKQGTDAVRTLSNAEDYLDDEDSDLE 216

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score =  152 bits (386), Expect = 3e-42
 Identities = 48/323 (14%), Positives = 103/323 (31%), Gaps = 57/323 (17%)

Query: 229 GWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVSSGKSLKHSVM 288
           G     I       + +     +       D  G SA + A     +++           
Sbjct: 1   GMDLSRINT--WKSKQL-KSFLSSKDTFKADVHGHSASYYAIADNNVRLVC--------- 48

Query: 289 SFRLPPHNIIPNGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATD 348
                         L+ +  A+ ++L    + PLH AA     ++ K+LL  G      D
Sbjct: 49  -------------TLL-NAGALKNLLE--NEFPLHQAATLEDTKIVKILLFSGLDDSQFD 92

Query: 349 DQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDG-NTCAHIAAMQGSVGVIEELMKF 407
           D+G   ++ A  +   +  ++F+      +    K G  T  + A M   V ++   +  
Sbjct: 93  DKGNTALYYAVDSGNMQTVKLFV-KKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLS- 150

Query: 408 DRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAV-HLAAQNGH 466
                 +        + + +  + GH +++ +L+    S    N   F     LA  N  
Sbjct: 151 --EIPSTFDLA-ILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKD 207

Query: 467 NQVLEEMRSSKALNVYSKKLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLG 526
            ++L+ +      N+Y      +A         A+  + ++                   
Sbjct: 208 IEMLQALFKYDI-NIY------SANLENVLLDDAEIAKMIIEK-----------HV---- 245

Query: 527 ELGSESGMTPLHLAAYSGNENVV 549
           E  S+S    L +   +  + ++
Sbjct: 246 EYKSDSYTKDLDIVKNNKLDEII 268

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score =  150 bits (382), Expect = 9e-42
 Identities = 30/247 (12%), Positives = 84/247 (34%), Gaps = 28/247 (11%)

Query: 319 QTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLV 378
            +  + A     +++   LL+ GA  +  +   + P+H AA     ++ +I L       
Sbjct: 32  HSASYYAIADNNVRLVCTLLNAGALKNLLE--NEFPLHQAATLEDTKIVKILL-FSGLDD 88

Query: 379 TATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVR 438
           +     GNT  + A   G++  ++  +   ++  +    +    T    A      ++V 
Sbjct: 89  SQFDDKGNTALYYAVDSGNMQTVKLFV--KKNWRLMFYGKTGWKTSFYHAVMLNDVSIVS 146

Query: 439 VLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKA-LNVYSKKLGVTALHVAAYF 497
             +    S T +     + +H+  +NGH  ++  +       N  +  L +  + +A   
Sbjct: 147 YFLSEIPS-TFDLAILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDN 205

Query: 498 GQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVRLLLNSAG 557
              + ++ L  +                      +  +         +  + ++++    
Sbjct: 206 KDIEMLQALFKY-----------DI---------NIYSANLENVLLDDAEIAKMII-EKH 244

Query: 558 VQVDAQT 564
           V+  + +
Sbjct: 245 VEYKSDS 251

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score =  136 bits (346), Expect = 1e-36
 Identities = 40/361 (11%), Positives = 89/361 (24%), Gaps = 108/361 (29%)

Query: 12  TPLHIAARVKDGDRCALMLLKSGAGPNLTN--------IAARVKDGDRCALMLLKSGAGP 63
               I           L    S       +         A    +       LL +GA  
Sbjct: 3   DLSRINT----WKSKQLKSFLSSKDTFKADVHGHSASYYAIADNNVR-LVCTLLNAGALK 57

Query: 64  NLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVVDLLI 123
           NL   + + P+H AA   +   +++LL  G D    +  G T L+ A  +   + V L +
Sbjct: 58  NLL--ENEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYYAVDSGNMQTVKLFV 115

Query: 124 QFVQNISQEKVLEYVNSVNEDGAS-ALHYACQVTKAELIPITSKEDQKTVKLLLEAGADV 182
           +    +             + G   + ++A               D   V   L      
Sbjct: 116 KKNWRL---------MFYGKTGWKTSFYHAVM-----------LNDVSIVSYFLSEIPS- 154

Query: 183 SLQTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIACNRGHM 242
                                                       +I  + + I    GH+
Sbjct: 155 ----------------------------------------TFDLAILLSCIHITIKNGHV 174

Query: 243 ELVNTMLNNHARVDVFDQEGRS-ALHLAAEHGYLKVSSGKSLKHSVMSFRLPPHNIIPNG 301
           +++  +L+     +  +       + LA ++  +++                        
Sbjct: 175 DMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDIEMLQ---------------------- 212

Query: 302 FLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQN 361
            L   +   I        +           ++ K++++      +        I    + 
Sbjct: 213 ALF-KYDINIY-------SANLENVLLDDAEIAKMIIEKHVEYKSDSYTKDLDIVKNNKL 264

Query: 362 N 362
           +
Sbjct: 265 D 265

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score =  134 bits (339), Expect = 1e-35
 Identities = 38/247 (15%), Positives = 80/247 (32%), Gaps = 28/247 (11%)

Query: 319 QTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLV 378
                +     + +  K  L         D  G    + A  +N   +    L    +L 
Sbjct: 2   MDLSRINT--WKSKQLKSFL-SSKDTFKADVHGHSASYYAIADNNVRLVCTLL-NAGALK 57

Query: 379 TATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGV-ISARNRVTEATPLQLAAEGGHANVV 437
                +     H AA      +++ L+    SG+  S  +     T L  A + G+   V
Sbjct: 58  NL--LENEFPLHQAATLEDTKIVKILLF---SGLDDSQFDD-KGNTALYYAVDSGNMQTV 111

Query: 438 RVLVKAGASCTDENKTGF-TAVHLAAQNGHNQVLEEMRSSKALNVYSKKLGVTALHVAAY 496
           ++ VK         KTG+ T+ + A       ++    S    + +   + ++ +H+   
Sbjct: 112 KLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIP-STFDLAILLSCIHITIK 170

Query: 497 FGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTP-LHLAAYSGNENVVRLLLNS 555
            G  D +  LL +             S      +     P + LA  + +  +++ L   
Sbjct: 171 NGHVDMMILLLDY-----------MTST--NTNNSLLFIPDIKLAIDNKDIEMLQALF-K 216

Query: 556 AGVQVDA 562
             + + +
Sbjct: 217 YDINIYS 223

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score =  124 bits (315), Expect = 2e-32
 Identities = 41/282 (14%), Positives = 81/282 (28%), Gaps = 44/282 (15%)

Query: 11  ETPLHIAARVKDGDRCALMLLKSGAGPNLTN------IAARVKDGDRCALMLLKSGAGPN 64
            +  + A    +       LL +GA  NL         AA ++D      +LL SG   +
Sbjct: 32  HSASYYAIADNNVR-LVCTLLNAGALKNLLENEFPLHQAATLEDTK-IVKILLFSGLDDS 89

Query: 65  LTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIG-ETPLHLASRNCKAEVVDLLI 123
              D G T ++ A   GN+ T++L ++     M+  K G +T  + A       +V   +
Sbjct: 90  QFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFL 149

Query: 124 QFVQNISQEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGADVS 183
             + +                  S +H   +                 + LLL+     +
Sbjct: 150 SEIPS----------TFDLAILLSCIHITIK-----------NGHVDMMILLLDYMTSTN 188

Query: 184 LQTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIACNRGHME 243
                             + ++L  + +      I  A                     E
Sbjct: 189 TNNSLLFIPDIKLAIDNKDIEMLQALFKY--DINIYSANL-----------ENVLLDDAE 235

Query: 244 LVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVSSGKSLKH 285
           +   ++  H             +    +   + +S  K L+ 
Sbjct: 236 IAKMIIEKHVEYKSDSYTKDLDIVKNNKLDEI-ISKNKELRL 276

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score =  120 bits (303), Expect = 1e-30
 Identities = 34/216 (15%), Positives = 73/216 (33%), Gaps = 30/216 (13%)

Query: 355 IHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVIS 414
           +         ++                  G++ ++ A    +V ++  L        ++
Sbjct: 4   LSRINTWKSKQLKSFLSSKD---TFKADVHGHSASYYAIADNNVRLVCTL--------LN 52

Query: 415 AR---NRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLE 471
           A    N +    PL  AA      +V++L+ +G   +  +  G TA++ A  +G+ Q ++
Sbjct: 53  AGALKNLLENEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYYAVDSGNMQTVK 112

Query: 472 EMRSSKA-LNVYSKKLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGS 530
                   L  Y K    T+ + A        V   LS +P T                 
Sbjct: 113 LFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDLA------------- 159

Query: 531 ESGMTPLHLAAYSGNENVVRLLLNSAGVQVDAQTQE 566
              ++ +H+   +G+ +++ LLL       +     
Sbjct: 160 -ILLSCIHITIKNGHVDMMILLL-DYMTSTNTNNSL 193

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 55.2 bits (134), Expect = 1e-08
 Identities = 9/131 (6%), Positives = 33/131 (25%), Gaps = 26/131 (19%)

Query: 11  ETPLHIAARVKDGDRCALMLLKSGAGPNLTNIAARVKDGDRCALM-------------LL 57
            + +HI  +        ++LL      N  N            +              L 
Sbjct: 162 LSCIHITIK-NGHVDMMILLLDYMTSTNTNN-----SLLFIPDIKLAIDNKDIEMLQALF 215

Query: 58  KSGAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAE 117
           K          +  +         +    ++++E   +    +   +  +   ++  +  
Sbjct: 216 KYDI-------NIYSANLENVLLDDAEIAKMIIEKHVEYKSDSYTKDLDIVKNNKLDEII 268

Query: 118 VVDLLIQFVQN 128
             +  ++ +  
Sbjct: 269 SKNKELRLMYV 279

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score =  149 bits (380), Expect = 9e-42
 Identities = 65/326 (19%), Positives = 114/326 (34%), Gaps = 96/326 (29%)

Query: 63  PNLTTDDGQTPVHAAAKYGNLVTL-------------QLLLEDGGDPM-YKNKIGETPLH 108
            N+   DG TP+  A+  G  +                  +  G       ++ GET LH
Sbjct: 3   VNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALH 62

Query: 109 LASRNCKAEVVDLLIQFVQNISQEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKED 168
           LA+R  +++    L++   +          N  +  G + LH A              + 
Sbjct: 63  LAARYSRSDAAKRLLEASADA---------NIQDNMGRTPLHAAVS-----------ADA 102

Query: 169 QKTVKLLLEAGADVSLQTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSI 228
           Q   ++L+   A                       D+                 + +   
Sbjct: 103 QGVFQILIRNRAT----------------------DL-----------------DARMHD 123

Query: 229 GWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVSSGKSLKHSVM 288
           G TPL++A       ++  ++N+HA V+  D  G+SALH AA    +  +          
Sbjct: 124 GTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAV--------- 174

Query: 289 SFRLPPHNIIPNGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATD 348
                         L+  + A  D+   R++TPL LAA  G  +  K+LLD  A+ D TD
Sbjct: 175 -------------VLL-KNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITD 220

Query: 349 DQGQKPIHVAAQNNFPEVAQIFLRAH 374
              + P  +A +    ++ ++    H
Sbjct: 221 HMDRLPRDIAQERMHHDIVRLLDLEH 246

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score =  147 bits (374), Expect = 7e-41
 Identities = 59/261 (22%), Positives = 102/261 (39%), Gaps = 24/261 (9%)

Query: 255 VDVFDQEGRSALHLAAEHGYLKVSSGKSLKHSVMSFRLPPHNIIPNGFLVHDHAAVIDIL 314
           V+V   +G + L +A+  G    +     +             + + F+    A++ +  
Sbjct: 3   VNVRGPDGFTPLMIASCSGGGLETGNSEEEED--------APAVISDFIYQ-GASLHNQT 53

Query: 315 TLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAH 374
               +T LHLAA   +    K LL+  A  +  D+ G+ P+H A   +   V QI +R  
Sbjct: 54  DRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNR 113

Query: 375 PSLVTATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEA-----TPLQLAA 429
            + + A   DG T   +AA     G++E+L        I++   V        + L  AA
Sbjct: 114 ATDLDARMHDGTTPLILAARLAVEGMLEDL--------INSHADVNAVDDLGKSALHWAA 165

Query: 430 EGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSK-KLGV 488
              + +   VL+K GA+   +N    T + LAA+ G  +  + +    A N      +  
Sbjct: 166 AVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFA-NRDITDHMDR 224

Query: 489 TALHVAAYFGQADTVRELLSH 509
               +A      D VR L   
Sbjct: 225 LPRDIAQERMHHDIVRLLDLE 245

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score =  139 bits (352), Expect = 9e-38
 Identities = 63/335 (18%), Positives = 102/335 (30%), Gaps = 97/335 (28%)

Query: 11  ETPLHIAARVKDGDRCALMLLKSGAGPNLTNIAARVKDGDRCALMLLKSGAG-PNLTTDD 69
            TPL IA+    G        +        +  A + D        +  GA   N T   
Sbjct: 11  FTPLMIASCSGGGLETGNSEEEE-------DAPAVISD-------FIYQGASLHNQTDRT 56

Query: 70  GQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVVDLLIQFVQNI 129
           G+T +H AA+Y      + LLE   D   ++ +G TPLH A       V  +LI      
Sbjct: 57  GETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILI------ 110

Query: 130 SQEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGADVSLQTKQN 189
                   +++   DG + L  A ++                ++ L+ + ADV       
Sbjct: 111 --RNRATDLDARMHDGTTPLILAARLAVEG-----------MLEDLINSHADV------- 150

Query: 190 HETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIACNRGHMELVNTML 249
                                            N    +G + L  A    +++    +L
Sbjct: 151 ---------------------------------NAVDDLGKSALHWAAAVNNVDAAVVLL 177

Query: 250 NNHARVDVFDQEGRSALHLAAEHGYLKVSSGKSLKHSVMSFRLPPHNIIPNGFLVHDHAA 309
            N A  D+ +    + L LAA  G  + +                        L+ DH A
Sbjct: 178 KNGANKDMQNNREETPLFLAAREGSYETAK----------------------VLL-DHFA 214

Query: 310 VIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASI 344
             DI     + P  +A E     + +LL       
Sbjct: 215 NRDITDHMDRLPRDIAQERMHHDIVRLLDLEHHHH 249

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score =  137 bits (348), Expect = 3e-37
 Identities = 58/317 (18%), Positives = 94/317 (29%), Gaps = 81/317 (25%)

Query: 138 VNSVNEDGASALHYACQVTKAELIPITSKED--QKTVKLLLEAGADVSLQTKQNHETAFH 195
           VN    DG + L  A           + +E+     +   +  GA +             
Sbjct: 3   VNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLH------------ 50

Query: 196 YCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIACNRGHMELVNTMLNNHARV 255
                                      N+    G T L +A      +    +L   A  
Sbjct: 51  ---------------------------NQTDRTGETALHLAARYSRSDAAKRLLEASADA 83

Query: 256 DVFDQEGRSALHLAAEHGYLKVSSGKSLKHSVMSFRLPPHNIIPNGFLVHDHAAVIDILT 315
           ++ D  GR+ LH A       V                         L+ + A  +D   
Sbjct: 84  NIQDNMGRTPLHAAVSADAQGVFQ----------------------ILIRNRATDLDARM 121

Query: 316 LRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHP 375
               TPL LAA      + + L++  A ++A DD G+  +H AA  N  + A   L  + 
Sbjct: 122 HDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAV-VLLKNG 180

Query: 376 SLVTATTKDGNTCAHIAAMQGSVGVIEELMKF-------DRSGVISARNRVTEATPLQLA 428
           +          T   +AA +GS    + L+         D               P  +A
Sbjct: 181 ANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDR----------LPRDIA 230

Query: 429 AEGGHANVVRVLVKAGA 445
            E  H ++VR+L     
Sbjct: 231 QERMHHDIVRLLDLEHH 247

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score =  112 bits (284), Expect = 2e-28
 Identities = 45/247 (18%), Positives = 79/247 (31%), Gaps = 71/247 (28%)

Query: 319 QTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLV 378
            TPL +A+ +G                     G +  +   + + P V   F+    SL 
Sbjct: 11  FTPLMIASCSGG--------------------GLETGNSEEEEDAPAVISDFIYQGASLH 50

Query: 379 TATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVR 438
             T + G T                                     L LAA    ++  +
Sbjct: 51  NQTDRTGET------------------------------------ALHLAARYSRSDAAK 74

Query: 439 VLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSK-KLGVTALHVAAYF 497
            L++A A    ++  G T +H A       V + +  ++A ++ ++   G T L +AA  
Sbjct: 75  RLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARL 134

Query: 498 GQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVRLLLNSAG 557
                + +L++             A        + G + LH AA   N +   +LL   G
Sbjct: 135 AVEGMLEDLINS-----------HADV--NAVDDLGKSALHWAAAVNNVDAAVVLL-KNG 180

Query: 558 VQVDAQT 564
              D Q 
Sbjct: 181 ANKDMQN 187

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 94.5 bits (236), Expect = 5e-22
 Identities = 40/189 (21%), Positives = 66/189 (34%), Gaps = 39/189 (20%)

Query: 378 VTATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVV 437
           V     DG T   IA+  G                                 E     V+
Sbjct: 3   VNVRGPDGFTPLMIASCSGGG-----------------------LETGNSEEEEDAPAVI 39

Query: 438 RVLVKAGASCTDE-NKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSK-KLGVTALHVAA 495
              +  GAS  ++ ++TG TA+HLAA+   +   + +  + A +   +  +G T LH A 
Sbjct: 40  SDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASA-DANIQDNMGRTPLHAAV 98

Query: 496 YFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVRLLLNS 555
                   + L+ +            A+ L       G TPL LAA    E ++  L+ +
Sbjct: 99  SADAQGVFQILIRN-----------RATDLDA-RMHDGTTPLILAARLAVEGMLEDLI-N 145

Query: 556 AGVQVDAQT 564
           +   V+A  
Sbjct: 146 SHADVNAVD 154

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 69.0 bits (170), Expect = 2e-13
 Identities = 26/130 (20%), Positives = 51/130 (39%), Gaps = 27/130 (20%)

Query: 451 NKTGFTAVHLAAQNGHNQVLEEMRS------------SKALNVYSKK--LGVTALHVAAY 496
              GFT + +A+ +G                       +  +++++    G TALH+AA 
Sbjct: 7   GPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAAR 66

Query: 497 FGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVRLLLNSA 556
           + ++D  + LL              A     +    G TPLH A  +  + V ++L+ + 
Sbjct: 67  YSRSDAAKRLLEA-----------SADA--NIQDNMGRTPLHAAVSADAQGVFQILIRNR 113

Query: 557 GVQVDAQTQE 566
              +DA+  +
Sbjct: 114 ATDLDARMHD 123

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 57.5 bits (140), Expect = 2e-09
 Identities = 25/104 (24%), Positives = 45/104 (43%), Gaps = 22/104 (21%)

Query: 11  ETPLHIAARVKDGDRCALMLLKSGAGPNLTN--------IAAR------VKDGDRCALML 56
           ++ LH AA V + D  A++LLK+GA  ++ N        +AAR       K       +L
Sbjct: 158 KSALHWAAAVNNVD-AAVVLLKNGANKDMQNNREETPLFLAAREGSYETAK-------VL 209

Query: 57  LKSGAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKN 100
           L   A  ++T    + P   A +  +   ++LL  +     + +
Sbjct: 210 LDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDLEHHHHHHHH 253

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score =  149 bits (378), Expect = 1e-41
 Identities = 50/306 (16%), Positives = 101/306 (33%), Gaps = 82/306 (26%)

Query: 67  TDDGQTPVHAAAKYGNLVT----LQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVVDLL 122
           T+DG + +H A  +         ++ +  D     ++N + +TPLHLA    + E+ + L
Sbjct: 5   TEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEAL 64

Query: 123 IQFVQNISQEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGADV 182
           +    +             +  G + LH AC+           +    +V +L ++    
Sbjct: 65  LGAGCDP---------ELRDFRGNTPLHLACE-----------QGCLASVGVLTQSCTTP 104

Query: 183 SLQTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIACNRGHM 242
            L +             A N +                        G T L +A   G++
Sbjct: 105 HLHSILK----------ATNYN------------------------GHTCLHLASIHGYL 130

Query: 243 ELVNTMLNNHARVDVFDQ-EGRSALHLAAEHGYLKVSSGKSLKHSVMSFRLPPHNIIPNG 301
            +V  +++  A V+  +   GR+ALHLA +     + S                      
Sbjct: 131 GIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVS---------------------- 168

Query: 302 FLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQN 361
            L+    A ++ +T +  +P  L       ++ + L  L         + +       ++
Sbjct: 169 LLL-KCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPESEDEESYDTES 227

Query: 362 NFPEVA 367
            F E  
Sbjct: 228 EFTEFT 233

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score =  146 bits (372), Expect = 8e-41
 Identities = 53/268 (19%), Positives = 88/268 (32%), Gaps = 43/268 (16%)

Query: 11  ETPLHIAARVKDGDRCALMLLKSGAGPNLTNIAARVKDGDRCALMLLKSGAGPNLTTDDG 70
           ++ LH+A                        +             +    A  N   +  
Sbjct: 9   DSFLHLAII-------------HEEKALTMEVIR----------QVKGDLAFLNFQNNLQ 45

Query: 71  QTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVVDLLIQFVQNIS 130
           QTP+H A         + LL  G DP  ++  G TPLHLA        V +L Q      
Sbjct: 46  QTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPH 105

Query: 131 QEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGADVSLQTKQNH 190
              +   + + N +G + LH A                   V+LL+  GADV+ Q   N 
Sbjct: 106 LHSI---LKATNYNGHTCLHLASI-----------HGYLGIVELLVSLGADVNAQEPCNG 151

Query: 191 ETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIACNRGHMELVNTMLN 250
            TA H      N D+++ +L+   G ++    N+ T  G++P  +   R    +   +  
Sbjct: 152 RTALHLAVDLQNPDLVSLLLKC--GADV----NRVTYQGYSPYQLTWGRPSTRIQQQLGQ 205

Query: 251 NHARVDVFDQEGRSALHLAAEHGYLKVS 278
                     E         E  + + +
Sbjct: 206 LTLENLQMLPESEDEESYDTESEFTEFT 233

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score =  145 bits (368), Expect = 3e-40
 Identities = 53/251 (21%), Positives = 98/251 (39%), Gaps = 28/251 (11%)

Query: 259 DQEGRSALHLAAEHGYLKVSSGKSLKHSVMSFRLPPHNIIPNGFLVHDHAAVIDILTLRK 318
            ++G S LHLA  H        K+L   V+                    A ++     +
Sbjct: 5   TEDGDSFLHLAIIHEE------KALTMEVIRQVK-------------GDLAFLNFQNNLQ 45

Query: 319 QTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFL-----RA 373
           QTPLHLA    Q ++ + LL  G   +  D +G  P+H+A +        +         
Sbjct: 46  QTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPH 105

Query: 374 HPSLVTATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGV-ISARNRVTEATPLQLAAEGG 432
             S++ AT  +G+TC H+A++ G +G++E L+     G  ++A+      T L LA +  
Sbjct: 106 LHSILKATNYNGHTCLHLASIHGYLGIVELLVS---LGADVNAQEPCNGRTALHLAVDLQ 162

Query: 433 HANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLGVTALH 492
           + ++V +L+K GA        G++   L       ++ +++      N+           
Sbjct: 163 NPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPESEDEES 222

Query: 493 VAAYFGQADTV 503
                   +  
Sbjct: 223 YDTESEFTEFT 233

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score =  141 bits (357), Expect = 9e-39
 Identities = 56/259 (21%), Positives = 89/259 (34%), Gaps = 62/259 (23%)

Query: 319 QTPLHLAAEAGQ----LQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAH 374
            + LHLA    +    ++V + +    A ++  ++  Q P+H+A   N PE+A+  L A 
Sbjct: 9   DSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAG 68

Query: 375 PSLVTATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHA 434
                     GNT                                    PL LA E G  
Sbjct: 69  CD-PELRDFRGNT------------------------------------PLHLACEQGCL 91

Query: 435 NVVRVLVKAGASCTDE------NKTGFTAVHLAAQNGHNQVLEEMRSSKA-LNVYSKKLG 487
             V VL ++  +          N  G T +HLA+ +G+  ++E + S  A +N      G
Sbjct: 92  ASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNG 151

Query: 488 VTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNEN 547
            TALH+A      D V  LL             GA       +  G +P  L     +  
Sbjct: 152 RTALHLAVDLQNPDLVSLLLKC-----------GADV--NRVTYQGYSPYQLTWGRPSTR 198

Query: 548 VVRLLLNSAGVQVDAQTQE 566
           + + L     ++      E
Sbjct: 199 IQQQLG-QLTLENLQMLPE 216

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score =  126 bits (320), Expect = 1e-33
 Identities = 42/264 (15%), Positives = 87/264 (32%), Gaps = 46/264 (17%)

Query: 224 KQTSIGWTPLLIACNRGH----MELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVSS 279
           + T  G + L +A         ME++  +  + A ++  +   ++ LHLA      +++ 
Sbjct: 3   QLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAE 62

Query: 280 GKSLKHSVMSFRLPPHNIIPNGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLD 339
                                  L+       ++   R  TPLHLA E G L    +L  
Sbjct: 63  ----------------------ALL-GAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQ 99

Query: 340 LGA------SIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAA 393
                     + AT+  G   +H+A+ + +  + ++ +     +      +G T  H+A 
Sbjct: 100 SCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAV 159

Query: 394 MQGSVGVIEELMKFDRSGVISAR---NRVTEA--TPLQLAAEGGHANVVRVLVKAGASCT 448
              +  ++  L        +      NRVT    +P QL        + + L +      
Sbjct: 160 DLQNPDLVSLL--------LKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENL 211

Query: 449 DENKTGFTAVHLAAQNGHNQVLEE 472
                         ++   +  E+
Sbjct: 212 QMLPESEDEESYDTESEFTEFTED 235

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score =  120 bits (303), Expect = 3e-31
 Identities = 48/193 (24%), Positives = 76/193 (39%), Gaps = 22/193 (11%)

Query: 380 ATTKDGNTCAHIAAMQGSVGVIEELMKF--DRSGVISARNRVTEATPLQLAAEGGHANVV 437
             T+DG++  H+A +     +  E+++        ++ +N   + TPL LA       + 
Sbjct: 3   QLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNN-LQQTPLHLAVITNQPEIA 61

Query: 438 RVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKL------GVTAL 491
             L+ AG      +  G T +HLA + G    +  +  S         L      G T L
Sbjct: 62  EALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCL 121

Query: 492 HVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVRL 551
           H+A+  G    V  L+S            GA  +      +G T LHLA    N ++V L
Sbjct: 122 HLASIHGYLGIVELLVSL-----------GAD-VNAQEPCNGRTALHLAVDLQNPDLVSL 169

Query: 552 LLNSAGVQVDAQT 564
           LL   G  V+  T
Sbjct: 170 LL-KCGADVNRVT 181

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 74.9 bits (185), Expect = 2e-15
 Identities = 26/121 (21%), Positives = 39/121 (32%), Gaps = 18/121 (14%)

Query: 451 NKTGFTAVHLAAQNGHNQVLEEMRS---SKALNVYSK-KLGVTALHVAAYFGQADTVREL 506
            + G + +HLA  +    +  E+          +  +  L  T LH+A    Q +    L
Sbjct: 5   TEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEAL 64

Query: 507 LSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVRLLLNSAGVQVDAQTQE 566
           L             G     EL    G TPLHLA   G    V +L   +       +  
Sbjct: 65  LGA-----------GCDP--ELRDFRGNTPLHLACEQGCLASVGVLT-QSCTTPHLHSIL 110

Query: 567 N 567
            
Sbjct: 111 K 111

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 67.6 bits (166), Expect = 6e-13
 Identities = 23/119 (19%), Positives = 40/119 (33%), Gaps = 11/119 (9%)

Query: 11  ETPLHIAARVKDGDRCALMLLKSGAGPNLTN---------IAARVKDGDRCALMLLKSGA 61
            T LH+A+          +L+  GA  N            +A  +++ D    +LLK GA
Sbjct: 118 HTCLHLASI-HGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPD-LVSLLLKCGA 175

Query: 62  GPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVVD 120
             N  T  G +P        +    Q L +   + +      E      + +   E  +
Sbjct: 176 DVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPESEDEESYDTESEFTEFTE 234

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score =  140 bits (355), Expect = 2e-38
 Identities = 51/193 (26%), Positives = 84/193 (43%), Gaps = 7/193 (3%)

Query: 319 QTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLV 378
           +T LHLAA   +    K LL+  A  +  D+ G+ P+H A   +   V QI +R   + +
Sbjct: 26  ETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDL 85

Query: 379 TATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGV-ISARNRVTEATPLQLAAEGGHANVV 437
            A   DG T   +AA     G++E+L+    S   ++A +     + L  AA   + +  
Sbjct: 86  DARMHDGTTPLILAARLAVEGMLEDLIN---SHADVNAVDD-LGKSALHWAAAVNNVDAA 141

Query: 438 RVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSK-KLGVTALHVAAY 496
            VL+K GA+   +N    T + LAA+ G  +  + +    A N      +      +A  
Sbjct: 142 VVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFA-NRDITDHMDRLPRDIAQE 200

Query: 497 FGQADTVRELLSH 509
               D VR L  +
Sbjct: 201 RMHHDIVRLLDEY 213

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score =  139 bits (353), Expect = 3e-38
 Identities = 53/228 (23%), Positives = 92/228 (40%), Gaps = 19/228 (8%)

Query: 328 AGQLQVCKLLLDLGASI-DATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGN 386
                V    +  GAS+ + TD  G+  +H+AA+ +  + A+  L    +        G 
Sbjct: 1   GDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLL-EASADANIQDNMGR 59

Query: 387 TCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGAS 446
           T  H A    + GV + L++ +R+  + AR      TPL LAA      ++  L+ + A 
Sbjct: 60  TPLHAAVSADAQGVFQILIR-NRATDLDARMH-DGTTPLILAARLAVEGMLEDLINSHAD 117

Query: 447 CTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSK-KLGVTALHVAAYFGQADTVRE 505
               +  G +A+H AA   +      +  + A N   +     T L +AA  G  +T + 
Sbjct: 118 VNAVDDLGKSALHWAAAVNNVDAAVVLLKNGA-NKDMQNNREETPLFLAAREGSYETAKV 176

Query: 506 LLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVRLLL 553
           LL H            A+   ++       P  +A    + ++VRLL 
Sbjct: 177 LLDH-----------FANR--DITDHMDRLPRDIAQERMHHDIVRLLD 211

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score =  134 bits (341), Expect = 1e-36
 Identities = 52/223 (23%), Positives = 87/223 (39%), Gaps = 27/223 (12%)

Query: 56  LLKSGAG-PNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNC 114
            +  GA   N T   G+T +H AA+Y      + LLE   D   ++ +G TPLH A    
Sbjct: 10  FIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSAD 69

Query: 115 KAEVVDLLIQFVQNISQEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKL 174
              V  +LI              +++   DG + L  A ++                ++ 
Sbjct: 70  AQGVFQILI--------RNRATDLDARMHDGTTPLILAARLAVEG-----------MLED 110

Query: 175 LLEAGADVSLQTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLL 234
           L+ + ADV+       ++A H+ A   N D    +L+   G       + Q +   TPL 
Sbjct: 111 LINSHADVNAVDDLG-KSALHWAAAVNNVDAAVVLLKN--GANK----DMQNNREETPLF 163

Query: 235 IACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKV 277
           +A   G  E    +L++ A  D+ D   R    +A E  +  +
Sbjct: 164 LAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDI 206

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score =  125 bits (317), Expect = 2e-33
 Identities = 49/235 (20%), Positives = 89/235 (37%), Gaps = 31/235 (13%)

Query: 171 TVKLLLEAGADVSLQTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGW 230
            +   +  GA +  QT +  ETA H  A    +D    +LE     +     N Q ++G 
Sbjct: 6   VISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEA--SADA----NIQDNMGR 59

Query: 231 TPLLIACNRGHMELVNTMLNNHAR-VDVFDQEGRSALHLAAEHGYLKVSSGKSLKHSVMS 289
           TPL  A +     +   ++ N A  +D    +G + L LAA      +            
Sbjct: 60  TPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLE---------- 109

Query: 290 FRLPPHNIIPNGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDD 349
                        L+ +  A ++ +    ++ LH AA    +    +LL  GA+ D  ++
Sbjct: 110 ------------DLI-NSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNN 156

Query: 350 QGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIEEL 404
           + + P+ +AA+    E A++ L  H +    T         IA  +    ++  L
Sbjct: 157 REETPLFLAAREGSYETAKVLL-DHFANRDITDHMDRLPRDIAQERMHHDIVRLL 210

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score =  124 bits (315), Expect = 5e-33
 Identities = 48/224 (21%), Positives = 81/224 (36%), Gaps = 28/224 (12%)

Query: 223 NKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVSSGKS 282
           N+    G T L +A      +    +L   A  ++ D  GR+ LH A       V     
Sbjct: 19  NQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQ--- 75

Query: 283 LKHSVMSFRLPPHNIIPNGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGA 342
                               L+ + A  +D       TPL LAA      + + L++  A
Sbjct: 76  -------------------ILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHA 116

Query: 343 SIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIE 402
            ++A DD G+  +H AA  N  + A + L  + +          T   +AA +GS    +
Sbjct: 117 DVNAVDDLGKSALHWAAAVNNVDAAVVLL-KNGANKDMQNNREETPLFLAAREGSYETAK 175

Query: 403 ELMKFDRSGV-ISARNRVTEATPLQLAAEGGHANVVRVLVKAGA 445
            L+            +   +  P  +A E  H ++VR+L +   
Sbjct: 176 VLLD---HFANRDITDH-MDRLPRDIAQERMHHDIVRLLDEYNL 215

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score =  117 bits (295), Expect = 4e-30
 Identities = 55/244 (22%), Positives = 94/244 (38%), Gaps = 55/244 (22%)

Query: 11  ETPLHIAARVKDGDRCALMLLKSGAGPNLTNIAARVKDGDRCALMLLKSGAGPNLTTDDG 70
           ET LH+AAR                  + ++ A            LL++ A  N+  + G
Sbjct: 26  ETALHLAARY-----------------SRSDAAK----------RLLEASADANIQDNMG 58

Query: 71  QTPVHAAAKYGNLVTLQLLLEDGG-DPMYKNKIGETPLHLASRNCKAEVVDLLIQFVQNI 129
           +TP+HAA         Q+L+ +   D   +   G TPL LA+R     +++ LI    ++
Sbjct: 59  RTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADV 118

Query: 130 SQEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGADVSLQTKQN 189
                    N+V++ G SALH+A  V   +              +LL+ GA+  +Q    
Sbjct: 119 ---------NAVDDLGKSALHWAAAVNNVD-----------AAVVLLKNGANKDMQNN-R 157

Query: 190 HETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIACNRGHMELVNTML 249
            ET     A  G+ +    +L+           +    +   P  IA  R H ++V  + 
Sbjct: 158 EETPLFLAAREGSYETAKVLLDH--FANR----DITDHMDRLPRDIAQERMHHDIVRLLD 211

Query: 250 NNHA 253
             + 
Sbjct: 212 EYNL 215

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score =  101 bits (254), Expect = 1e-24
 Identities = 44/186 (23%), Positives = 70/186 (37%), Gaps = 39/186 (20%)

Query: 11  ETPLHIAARVKDGDRCALMLLKSGAGPNLTNIAARVKDGDRCALM-------------LL 57
            TPLH A    D      +L+++ A    T++ AR+ DG    L+             L+
Sbjct: 59  RTPLHAAVS-ADAQGVFQILIRNRA----TDLDARMHDG-TTPLILAARLAVEGMLEDLI 112

Query: 58  KSGAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAE 117
            S A  N   D G++ +H AA   N+    +LL++G +   +N   ETPL LA+R    E
Sbjct: 113 NSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYE 172

Query: 118 VVDLLIQFVQNISQEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLE 177
              +L+    N          +  +         A +           +     V+LL E
Sbjct: 173 TAKVLLDHFANR---------DITDHMDRLPRDIAQE-----------RMHHDIVRLLDE 212

Query: 178 AGADVS 183
                S
Sbjct: 213 YNLVRS 218

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 88.6 bits (221), Expect = 3e-20
 Identities = 33/136 (24%), Positives = 58/136 (42%), Gaps = 16/136 (11%)

Query: 431 GGHANVVRVLVKAGASCTDE-NKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSK-KLGV 488
           G    V+   +  GAS  ++ ++TG TA+HLAA+   +   + +  + A +   +  +G 
Sbjct: 1   GDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASA-DANIQDNMGR 59

Query: 489 TALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENV 548
           T LH A         + L+ +            A+ L       G TPL LAA    E +
Sbjct: 60  TPLHAAVSADAQGVFQILIRN-----------RATDLDA-RMHDGTTPLILAARLAVEGM 107

Query: 549 VRLLLNSAGVQVDAQT 564
           +  L+ ++   V+A  
Sbjct: 108 LEDLI-NSHADVNAVD 122

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 54.0 bits (131), Expect = 2e-08
 Identities = 29/106 (27%), Positives = 48/106 (45%), Gaps = 17/106 (16%)

Query: 11  ETPLHIAARVKDGDRCALMLLKSGAGPNLTN--------IAARVKDGDRCALMLLKSGAG 62
           ++ LH AA V + D  A++LLK+GA  ++ N        +AAR +     A +LL   A 
Sbjct: 126 KSALHWAAAVNNVD-AAVVLLKNGANKDMQNNREETPLFLAAR-EGSYETAKVLLDHFAN 183

Query: 63  PNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLH 108
            ++T    + P   A +  +   ++LL E        N +    LH
Sbjct: 184 RDITDHMDRLPRDIAQERMHHDIVRLLDE-------YNLVRSPQLH 222

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score =  139 bits (351), Expect = 1e-37
 Identities = 61/319 (19%), Positives = 97/319 (30%), Gaps = 67/319 (21%)

Query: 60  GAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLED-------GGDPMYK-NKIGETPLHLAS 111
            AG        +  +  A    N   L+ LL           D  +K  + G+T L  A 
Sbjct: 3   SAGEKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAM 62

Query: 112 RNCKA---EVVDLLIQFVQNISQEKVL--EYVNSVNEDGASALHYACQVTKAELIPITSK 166
            N      + + LL+   +     K             G +ALH A +           +
Sbjct: 63  LNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIE-----------R 111

Query: 167 EDQKTVKLLLEAGADVSLQTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQT 226
            +   V LL+E GADV                                            
Sbjct: 112 RNMTLVTLLVENGADVQAAAN--------------------------GDFFKKTKGRPGF 145

Query: 227 SIGWTPLLIACNRGHMELVNTMLNN---HARVDVFDQEGRSALHLAAEHGYLKVSSGKSL 283
             G  PL +A     + +V  +L N    A +   D  G + LH   E     V + K +
Sbjct: 146 YFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFV 205

Query: 284 KHSVMSFRLPPHNIIPNGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGAS 343
                      + I+  G  +H    + +I   +  TPL LAA +G++ V   +L     
Sbjct: 206 TSMY-------NEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQREI- 257

Query: 344 IDATDDQGQKPIHVAAQNN 362
                    +  H AA ++
Sbjct: 258 ------HEPECRHAAAHHH 270

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score =  111 bits (278), Expect = 2e-27
 Identities = 43/280 (15%), Positives = 78/280 (27%), Gaps = 71/280 (25%)

Query: 319 QTPLHLAAEAGQLQVCKLLLDL-------GASIDATD-DQGQKPIHVA---AQNNFPEVA 367
           +  +  A      Q  + LL             +  D + G+  +  A     N   +  
Sbjct: 14  RRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTI 73

Query: 368 QIFLR------AHPSLVTATTKD----GNTCAHIAAMQGSVGVIEELMK-------FDRS 410
            + L       +    V A+  D    G T  HIA  + ++ ++  L++           
Sbjct: 74  ALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANG 133

Query: 411 GVISARNRVTEA----TPLQLAAEGGHANVVRVLVKAGASCTD---ENKTGFTAVHLAAQ 463
                            PL LAA      +V+ L++      D    +  G T +H   +
Sbjct: 134 DFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVE 193

Query: 464 NGHNQV---LEEMRSSKALNVYSKKL-------------GVTALHVAAYFGQADTVRELL 507
              N V            + +   KL             G+T L +AA  G+   +  +L
Sbjct: 194 VADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYIL 253

Query: 508 SHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNEN 547
                                         H AA+  + +
Sbjct: 254 QR-----------EI---------HEPECRHAAAHHHHHH 273

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score =  109 bits (274), Expect = 6e-27
 Identities = 47/295 (15%), Positives = 90/295 (30%), Gaps = 60/295 (20%)

Query: 228 IGWTPLLIACNRGHMELVNTMLN-------NHARVDVFDQE-GRSALHLAAEHGYLKVSS 279
                +  A  + + + + ++L             +  D E G++ L  A  + +     
Sbjct: 12  YDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNG--- 68

Query: 280 GKSLKHSVMSFRLPPHNIIPNGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLD 339
                 +     L       +      +A+  D    + QT LH+A E   + +  LL++
Sbjct: 69  -----QNDTIALLLDVARKTDSLKQFVNASYTDSYY-KGQTALHIAIERRNMTLVTLLVE 122

Query: 340 LGASIDATDD--------------QGQKPIHVAAQNNFPEVAQIFLR--AHPSLVTATTK 383
            GA + A  +               G+ P+ +AA  N   + +  L+    P+ ++A   
Sbjct: 123 NGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDS 182

Query: 384 DGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKA 443
            GNT  H                          +   + T    +       +   L   
Sbjct: 183 VGNTVLHALVEVA--------------------DNTVDNTKFVTSMYNEILILGAKLHPT 222

Query: 444 GASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLGVTALHVAAYFG 498
                  N+ G T + LAA +G   VL  +   +              H AA+  
Sbjct: 223 LKLEEITNRKGLTPLALAASSGKIGVLAYILQREI-------HEPECRHAAAHHH 270

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score =  102 bits (256), Expect = 1e-24
 Identities = 46/284 (16%), Positives = 85/284 (29%), Gaps = 79/284 (27%)

Query: 7   GKLRETPLHIAA-RVKDGD-RCALMLLKSGAGPNLTNIAARVKDGDRCALMLLKSGAGPN 64
            +  +T L  A   + +G      +LL      +                      A   
Sbjct: 51  PETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQFV---------------NASYT 95

Query: 65  LTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNK--------------IGETPLHLA 110
            +   GQT +H A +  N+  + LL+E+G D                     GE PL LA
Sbjct: 96  DSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLA 155

Query: 111 SRNCKAEVVDLLIQFVQNISQEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQK 170
           +   +  +V  L+              +++ +  G + LH   +   A+     +K    
Sbjct: 156 ACTNQLAIVKFLL------QNSWQPADISARDSVGNTVLHALVE--VADNTVDNTKFVTS 207

Query: 171 TVKLLLEAGADVSLQTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGW 230
               +L  GA +                                  ++ +  N++   G 
Sbjct: 208 MYNEILILGAKLH------------------------------PTLKLEEITNRK---GL 234

Query: 231 TPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGY 274
           TPL +A + G + ++  +L                 H AA H +
Sbjct: 235 TPLALAASSGKIGVLAYILQREI-------HEPECRHAAAHHHH 271

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 89.5 bits (222), Expect = 4e-20
 Identities = 34/207 (16%), Positives = 57/207 (27%), Gaps = 43/207 (20%)

Query: 385 GNTCAHIAAMQGSVGVIEELMKFDRSGV-----ISARNRVTEATPLQLA---AEGGHANV 436
                  A  Q +   +E L+ F +           ++  T  T L  A      G  + 
Sbjct: 13  DRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDT 72

Query: 437 VRVLVKAGA-----------SCTDENKTGFTAVHLAAQNGHNQVLE-------------- 471
           + +L+               S TD    G TA+H+A +  +  ++               
Sbjct: 73  IALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAAN 132

Query: 472 EMRSSKALNVYSKKLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSE 531
                K         G   L +AA   Q   V+ LL +      +D              
Sbjct: 133 GDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQN--SWQPADI--------SARDS 182

Query: 532 SGMTPLHLAAYSGNENVVRLLLNSAGV 558
            G T LH      +  V      ++  
Sbjct: 183 VGNTVLHALVEVADNTVDNTKFVTSMY 209

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 76.0 bits (187), Expect = 2e-15
 Identities = 31/170 (18%), Positives = 54/170 (31%), Gaps = 27/170 (15%)

Query: 423 TPLQLAAEGGHANVVRVLVKAGASCTD--------ENKTGFTAVHLA---AQNGHNQVLE 471
             +  A    +   +  L+                + +TG T +  A     NG N  + 
Sbjct: 15  RSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIA 74

Query: 472 EMRSSKALNVYSKKL-----------GVTALHVAAYFGQADTVRELLSHVPG---TVKSD 517
            +          K+            G TALH+A        V  L+ +  G      ++
Sbjct: 75  LLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVEN--GADVQAAAN 132

Query: 518 PPTGASFLGELGSESGMTPLHLAAYSGNENVVRLLLNSAGVQVDAQTQEN 567
                   G  G   G  PL LAA +    +V+ LL ++    D   +++
Sbjct: 133 GDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDS 182

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score =  135 bits (341), Expect = 1e-36
 Identities = 46/216 (21%), Positives = 83/216 (38%), Gaps = 25/216 (11%)

Query: 319 QTPLHLAAEAGQLQ-VCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRA---- 373
           ++PL LAA+   +Q + KLL   G  +      G+  +H+AA  +  E A + + A    
Sbjct: 4   ESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPEL 63

Query: 374 HPSLVTATTKDGNTCAHIAAMQGSVGVIEELM----------KFDRSGVISARNRVTEAT 423
               +T+   +G T  HIA +  +V ++  L+                            
Sbjct: 64  VFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEH 123

Query: 424 PLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRS-------- 475
           PL  AA  G   +VR+L++ GA    ++  G T +H+     +     +M +        
Sbjct: 124 PLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGG 183

Query: 476 --SKALNVYSKKLGVTALHVAAYFGQADTVRELLSH 509
              K+L +     G+T   +A   G     + L+  
Sbjct: 184 DHLKSLELVPNNQGLTPFKLAGVEGNIVMFQHLMQK 219

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score =  110 bits (278), Expect = 7e-28
 Identities = 47/244 (19%), Positives = 88/244 (36%), Gaps = 50/244 (20%)

Query: 228 IGWTPLLIACNRGHMELVNTMLNNH-ARVDVFDQEGRSALHLAAEHGYLKVSSGKSLKHS 286
           I  +PLL+A     ++ ++ +L      V      G +ALH+AA +  L+ +        
Sbjct: 2   IWESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAM------- 54

Query: 287 VMSFRLPPHNIIPNGFLVHDHAAVIDILTL-----RKQTPLHLAAEAGQLQVCKLLLDLG 341
                           L+ + A  +    +       QT LH+A     + + + LL  G
Sbjct: 55  ---------------VLM-EAAPELVFEPMTSELYEGQTALHIAVINQNVNLVRALLARG 98

Query: 342 ASIDATDD-------------QGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTC 388
           AS+ A                 G+ P+  AA     E+ ++ +  H + + A    GNT 
Sbjct: 99  ASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLI-EHGADIRAQDSLGNTV 157

Query: 389 AHIAAMQGSVGVIEELMKF--DRSGVISARNRVTEA-----TPLQLAAEGGHANVVRVLV 441
            HI  +Q +     ++        G    ++          TP +LA   G+  + + L+
Sbjct: 158 LHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQHLM 217

Query: 442 KAGA 445
           +   
Sbjct: 218 QKRK 221

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 49.9 bits (120), Expect = 5e-07
 Identities = 15/80 (18%), Positives = 26/80 (32%), Gaps = 15/80 (18%)

Query: 486 LGVTALHVAAYFGQADTVRELL-SHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSG 544
           +  + L +AA       + +LL              G           G T LH+AA   
Sbjct: 2   IWESPLLLAAKENDVQALSKLLKFE-----------GCEV--HQRGAMGETALHIAALYD 48

Query: 545 NENVVRLLLNSAGVQVDAQT 564
           N     +L+  A  ++  + 
Sbjct: 49  NLEAAMVLM-EAAPELVFEP 67

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score =  130 bits (329), Expect = 6e-35
 Identities = 52/242 (21%), Positives = 98/242 (40%), Gaps = 20/242 (8%)

Query: 320 TPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVT 379
              +LA      ++ + +L   +    TD   +  +H A      E+ + FL      V 
Sbjct: 9   MICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVE-FLLQLGVPVN 67

Query: 380 ATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRV 439
                G +  HIAA  G   +++ L+   +   ++A N+    TPL  AA      +  +
Sbjct: 68  DKDDAGWSPLHIAASAGXDEIVKALL--VKGAHVNAVNQ-NGCTPLHYAASKNRHEIAVM 124

Query: 440 LVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLGVTALHVAAYFGQ 499
           L++ GA+   ++    TA+H AA  G+ +++  +   KA        G T LH+A    +
Sbjct: 125 LLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEER 184

Query: 500 ADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVRLLLNSAGVQ 559
            +  + L++            GAS    + ++   TPL +A   G   ++   L + G +
Sbjct: 185 VEEAKFLVTQ-----------GASI--YIENKEEKTPLQVAK--GGLGLILKRL-AEGEE 228

Query: 560 VD 561
             
Sbjct: 229 AS 230

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score =  127 bits (320), Expect = 1e-33
 Identities = 52/248 (20%), Positives = 94/248 (37%), Gaps = 29/248 (11%)

Query: 262 GRSALHLAAEHGYLKVSSGKSLKHSVMSFRLPPHNIIPNGFLVHDHAAVIDILTLRKQTP 321
                +LA      ++                         ++    ++        +T 
Sbjct: 7   NIMICNLAYSGKLDELKE----------------------RIL-ADKSLATRTDQDSRTA 43

Query: 322 LHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTAT 381
           LH A  AG  ++ + LL LG  ++  DD G  P+H+AA     E+ +  L    + V A 
Sbjct: 44  LHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGXDEIVKALL-VKGAHVNAV 102

Query: 382 TKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLV 441
            ++G T  H AA +    +   L+  +      A++   +AT +  AA  G+  +V +L+
Sbjct: 103 NQNGCTPLHYAASKNRHEIAVMLL--EGGANPDAKDH-YDATAMHRAAAKGNLKMVHILL 159

Query: 442 KAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLGVTALHVAAYFGQAD 501
              AS   ++  G T +HLA      +  + + +  A      K   T L VA   G   
Sbjct: 160 FYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVAK--GGLG 217

Query: 502 TVRELLSH 509
            + + L+ 
Sbjct: 218 LILKRLAE 225

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score =  125 bits (315), Expect = 4e-33
 Identities = 55/278 (19%), Positives = 96/278 (34%), Gaps = 52/278 (18%)

Query: 68  DDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVVDLLIQFVQ 127
                  + A         + +L D       ++   T LH A      E+V+ L+Q   
Sbjct: 5   VSNIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGV 64

Query: 128 NISQEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGADVSLQTK 187
            +         N  ++ G S LH A                 + VK LL  GA V+   +
Sbjct: 65  PV---------NDKDDAGWSPLHIAAS-----------AGXDEIVKALLVKGAHVNAVNQ 104

Query: 188 QNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIACNRGHMELVNT 247
            N  T  HY A    +++   +LE  +        + +     T +  A  +G++++V+ 
Sbjct: 105 -NGCTPLHYAASKNRHEIAVMLLEGGAN------PDAKDHYDATAMHRAAAKGNLKMVHI 157

Query: 248 MLNNHARVDVFDQEGRSALHLAAEHGYLKVSSGKSLKHSVMSFRLPPHNIIPNGFLVHDH 307
           +L   A  ++ D EG + LHLA +   ++ +                         +   
Sbjct: 158 LLFYKASTNIQDTEGNTPLHLACDEERVEEAK-----------------------FLVTQ 194

Query: 308 AAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASID 345
            A I I    ++TPL +A   G L +    L  G    
Sbjct: 195 GASIYIENKEEKTPLQVA--KGGLGLILKRLAEGEEAS 230

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score =  118 bits (298), Expect = 9e-31
 Identities = 53/218 (24%), Positives = 94/218 (43%), Gaps = 27/218 (12%)

Query: 55  MLLKSGAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNC 114
            +L   +    T  D +T +H A   G+   ++ LL+ G     K+  G +PLH+A+   
Sbjct: 25  RILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAG 84

Query: 115 KAEVVDLLIQFVQNISQEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKL 174
             E+V  L+    ++         N+VN++G + LHYA             K   +   +
Sbjct: 85  XDEIVKALLVKGAHV---------NAVNQNGCTPLHYAAS-----------KNRHEIAVM 124

Query: 175 LLEAGADVSLQTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLL 234
           LLE GA+   +      TA H  A  GN  ++  +L          + N Q + G TPL 
Sbjct: 125 LLEGGANPDAKDH-YDATAMHRAAAKGNLKMVHILLFY------KASTNIQDTEGNTPLH 177

Query: 235 IACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEH 272
           +AC+   +E    ++   A + + ++E ++ L +A   
Sbjct: 178 LACDEERVEEAKFLVTQGASIYIENKEEKTPLQVAKGG 215

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score =  118 bits (297), Expect = 1e-30
 Identities = 56/275 (20%), Positives = 99/275 (36%), Gaps = 52/275 (18%)

Query: 97  MYKNKIGETPLHLASRNCKAEVVDLLIQFVQNISQEKVLEYVNSVNEDGASALHYACQVT 156
           M          +LA      E+ + ++                  ++D  +ALH+AC   
Sbjct: 1   MEGCVSNIMICNLAYSGKLDELKERILADKSLA---------TRTDQDSRTALHWACS-- 49

Query: 157 KAELIPITSKEDQKTVKLLLEAGADVSLQTKQNHETAFHYCAVAGNNDVLTGMLEQMSGT 216
                        + V+ LL+ G  V+ +      +  H  A AG ++++  +L +    
Sbjct: 50  ---------AGHTEIVEFLLQLGVPVNDKDD-AGWSPLHIAASAGXDEIVKALLVK---- 95

Query: 217 EISKALNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLK 276
                +N     G TPL  A ++   E+   +L   A  D  D    +A+H AA  G LK
Sbjct: 96  --GAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLK 153

Query: 277 VSSGKSLKHSVMSFRLPPHNIIPNGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKL 336
           +                         ++  + A  +I      TPLHLA +  +++  K 
Sbjct: 154 MVH-----------------------ILLFYKASTNIQDTEGNTPLHLACDEERVEEAKF 190

Query: 337 LLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFL 371
           L+  GASI   + + + P+ VA       +    L
Sbjct: 191 LVTQGASIYIENKEEKTPLQVAKGGL--GLILKRL 223

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score =  113 bits (284), Expect = 9e-29
 Identities = 58/259 (22%), Positives = 99/259 (38%), Gaps = 39/259 (15%)

Query: 189 NHETAFHYCAVAGNNDVLTGMLEQMSGTEISK--ALNKQTSIGWTPLLIACNRGHMELVN 246
           ++    +  A +G  D L   +       ++      +      T L  AC+ GH E+V 
Sbjct: 6   SNIMICNL-AYSGKLDELKERI-------LADKSLATRTDQDSRTALHWACSAGHTEIVE 57

Query: 247 TMLNNHARVDVFDQEGRSALHLAAEHGYLKVSSGKSLKHSVMSFRLPPHNIIPNGFLVHD 306
            +L     V+  D  G S LH+AA  G  ++                          +  
Sbjct: 58  FLLQLGVPVNDKDDAGWSPLHIAASAGXDEIVK-----------------------ALLV 94

Query: 307 HAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEV 366
             A ++ +     TPLH AA   + ++  +LL+ GA+ DA D      +H AA     ++
Sbjct: 95  KGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKM 154

Query: 367 AQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQ 426
             I L  + +       +GNT  H+A  +  V   + L+   +   I   N+  E TPLQ
Sbjct: 155 VHILL-FYKASTNIQDTEGNTPLHLACDEERVEEAKFLV--TQGASIYIENK-EEKTPLQ 210

Query: 427 LAAEGGHANVVRVLVKAGA 445
           +A   G   ++   +  G 
Sbjct: 211 VAK--GGLGLILKRLAEGE 227

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 91.1 bits (226), Expect = 6e-21
 Identities = 51/247 (20%), Positives = 83/247 (33%), Gaps = 56/247 (22%)

Query: 11  ETPLHIAARVKDGDRCALMLLKSGAGPNLTNIAARVKDGDRCALMLLKSGAGPNLTTDDG 70
            T LH A                      T I             LL+ G   N   D G
Sbjct: 41  RTALHWACSA-----------------GHTEIVE----------FLLQLGVPVNDKDDAG 73

Query: 71  QTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVVDLLIQFVQNIS 130
            +P+H AA  G    ++ LL  G      N+ G TPLH A+   + E+  +L++   N  
Sbjct: 74  WSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANP- 132

Query: 131 QEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGADVSLQTKQNH 190
                   ++ +   A+A+H A             K + K V +LL   A  ++Q     
Sbjct: 133 --------DAKDHYDATAMHRAAA-----------KGNLKMVHILLFYKASTNIQDT-EG 172

Query: 191 ETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIACNRGHMELVNTMLN 250
            T  H        +    ++ Q        ++  +     TPL +A  +G + L+   L 
Sbjct: 173 NTPLHLACDEERVEEAKFLVTQ------GASIYIENKEEKTPLQVA--KGGLGLILKRLA 224

Query: 251 NHARVDV 257
                 +
Sbjct: 225 EGEEASM 231

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 85.7 bits (212), Expect = 3e-19
 Identities = 44/217 (20%), Positives = 71/217 (32%), Gaps = 51/217 (23%)

Query: 351 GQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIEELMKFDRS 410
                ++A      E+ +  L A  SL T T +D  T                       
Sbjct: 7   NIMICNLAYSGKLDELKERIL-ADKSLATRTDQDSRT----------------------- 42

Query: 411 GVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVL 470
                         L  A   GH  +V  L++ G    D++  G++ +H+AA  G ++++
Sbjct: 43  -------------ALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGXDEIV 89

Query: 471 EEMRSSKALNVYSKKLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGS 530
           + +    A      + G T LH AA   + +    LL         D             
Sbjct: 90  KALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKD------------- 136

Query: 531 ESGMTPLHLAAYSGNENVVRLLLNSAGVQVDAQTQEN 567
               T +H AA  GN  +V +LL       + Q  E 
Sbjct: 137 HYDATAMHRAAAKGNLKMVHILL-FYKASTNIQDTEG 172

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 64.1 bits (156), Expect = 9e-12
 Identities = 28/118 (23%), Positives = 47/118 (39%), Gaps = 16/118 (13%)

Query: 451 NKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSK-KLGVTALHVAAYFGQADTVRELLSH 509
             +     +LA     +++ E + + K+       +   TALH A   G  + V  LL  
Sbjct: 4   CVSNIMICNLAYSGKLDELKERILADKS-LATRTDQDSRTALHWACSAGHTEIVEFLLQL 62

Query: 510 VPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVRLLLNSAGVQVDAQTQEN 567
                      G         ++G +PLH+AA +G + +V+ LL   G  V+A  Q  
Sbjct: 63  -----------GVPV--NDKDDAGWSPLHIAASAGXDEIVKALL-VKGAHVNAVNQNG 106

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score =  129 bits (327), Expect = 2e-34
 Identities = 57/319 (17%), Positives = 91/319 (28%), Gaps = 94/319 (29%)

Query: 70  GQTPVHAAAKYGNLVTLQLLLE--------DGGDPMYKNKIGETPLHLASRNCK---AEV 118
            +  + +    G    L  LLE               +   G+T L  A  N +      
Sbjct: 2   DRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNAC 61

Query: 119 VDLLIQFVQNISQEKVL--EYVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLL 176
           +  L+Q  ++    K L           G SALH A +           K   + VKLL+
Sbjct: 62  IMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIE-----------KRSLQCVKLLV 110

Query: 177 EAGADVSLQTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIA 236
           E GADV L+                             G    K        G  PL +A
Sbjct: 111 ENGADVHLRAC---------------------------GRFFQKHQGTCFYFGELPLSLA 143

Query: 237 CNRGHMELVNTMLNNH---ARVDVFDQEGRSALHLAAEHGYLKVSSGKSLKHSVMSFRLP 293
                 ++V  +L N    A ++  D  G + LH                          
Sbjct: 144 ACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIADNS----------------- 186

Query: 294 PHNIIPNGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQK 353
                                   + + L +    G LQ+   L       + ++ QG  
Sbjct: 187 -----------------------PENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLT 223

Query: 354 PIHVAAQNNFPEVAQIFLR 372
           P+ +AA+    E+ +  L+
Sbjct: 224 PLKLAAKEGKIEIFRHILQ 242

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score =  112 bits (281), Expect = 4e-28
 Identities = 48/289 (16%), Positives = 77/289 (26%), Gaps = 59/289 (20%)

Query: 231 TPLLIACNRGHMELVNTMLNNHAR--------VDVFDQEGRSALHLAAEHGYLKVSSGKS 282
             L    +RG  E +  +L                    G++ L  A  +          
Sbjct: 4   DRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQ-------- 55

Query: 283 LKHSVMSFRLPPHNIIPNGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGA 342
                            +G       A       +  + LH+A E   LQ  KLL++ GA
Sbjct: 56  -DGVNACIMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGA 114

Query: 343 SIDATDD-------------QGQKPIHVAAQNNFPEVAQIFLRAHPSL--VTATTKDGNT 387
            +                   G+ P+ +AA     +V    L        + AT   GNT
Sbjct: 115 DVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNT 174

Query: 388 CAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASC 447
             H   M                      +   E + L +    G   +   L       
Sbjct: 175 VLHALVMIA--------------------DNSPENSALVIHMYDGLLQMGARLCPTVQLE 214

Query: 448 TDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLGVTALHVAAY 496
              N  G T + LAA+ G  ++   +   +         G  A H   +
Sbjct: 215 EISNHQGLTPLKLAAKEGKIEIFRHILQREF-------SGAAAHHHHHH 256

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score =  109 bits (275), Expect = 3e-27
 Identities = 42/253 (16%), Positives = 64/253 (25%), Gaps = 71/253 (28%)

Query: 319 QTPLHLAA---EAGQLQVCKLLLDLG-----------ASIDATDDQGQKPIHVAAQNNFP 364
           +T L  A    + G       LL +            A       QG   +H+A +    
Sbjct: 44  KTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSL 103

Query: 365 EVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATP 424
           +  ++ +      V           H                F                P
Sbjct: 104 QCVKLLVENGAD-VHLRACGRFFQKHQGTC----------FYFGE-------------LP 139

Query: 425 LQLAAEGGHANVVRVLVKAGASCTD---ENKTGFTAVHLAAQNGHNQVLEEMRSSKALNV 481
           L LAA     +VV  L++           +  G T +H       N              
Sbjct: 140 LSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIADN-------------- 185

Query: 482 YSKKLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAA 541
                  +AL +  Y G       L                    E+ +  G+TPL LAA
Sbjct: 186 ---SPENSALVIHMYDGLLQMGARLCPT-----------VQLE--EISNHQGLTPLKLAA 229

Query: 542 YSGNENVVRLLLN 554
             G   + R +L 
Sbjct: 230 KEGKIEIFRHILQ 242

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 90.6 bits (225), Expect = 1e-20
 Identities = 42/270 (15%), Positives = 73/270 (27%), Gaps = 81/270 (30%)

Query: 7   GKLRETPLHIAA-RVKDGD-RCALMLLKSGAGPNLTNIAARVKDGDRCALMLLKSGAGPN 64
           G   +T L  A   ++DG   C + LL+                            A   
Sbjct: 40  GSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPL---------------VNAQCT 84

Query: 65  LTTDDGQTPVHAAAKYGNLVTLQLLLEDGGD-------------PMYKNKIGETPLHLAS 111
                G + +H A +  +L  ++LL+E+G D                    GE PL LA+
Sbjct: 85  DEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAA 144

Query: 112 RNCKAEVVDLLIQFVQNISQEKVLEYVNSVNEDGASALHYACQVTKAE-----LIPITSK 166
              + +VV  L++     +       + + +  G + LH    +         L+     
Sbjct: 145 CTKQWDVVTYLLENPHQPAS------LEATDSLGNTVLHALVMIADNSPENSALVIHMYD 198

Query: 167 EDQKTVKLLLEAGADVSLQTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQT 226
              +    L        +   Q                                      
Sbjct: 199 GLLQMGARLCPTVQLEEISNHQ-------------------------------------- 220

Query: 227 SIGWTPLLIACNRGHMELVNTMLNNHARVD 256
             G TPL +A   G +E+   +L       
Sbjct: 221 --GLTPLKLAAKEGKIEIFRHILQREFSGA 248

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 77.5 bits (191), Expect = 4e-16
 Identities = 36/230 (15%), Positives = 59/230 (25%), Gaps = 59/230 (25%)

Query: 385 GNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEA-----TPLQLAA---EGGHANV 436
                     +G    +  L+++ R       +          T L  A    + G    
Sbjct: 2   DRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNAC 61

Query: 437 VRVLVKAG-----------ASCTDENKTGFTAVHLAAQNGHNQVLE-------------E 472
           +  L++             A CTDE   G +A+H+A +    Q ++              
Sbjct: 62  IMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRAC 121

Query: 473 MRSSKALNVYSKKLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSES 532
            R  +         G   L +AA   Q D V  LL +      +          E     
Sbjct: 122 GRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLEN--PHQPASL--------EATDSL 171

Query: 533 GMTPLHL----------------AAYSGNENVVRLLLNSAGVQVDAQTQE 566
           G T LH                   Y G   +   L        +    +
Sbjct: 172 GNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLC-PTVQLEEISNHQ 220

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 71.7 bits (176), Expect = 3e-14
 Identities = 34/169 (20%), Positives = 55/169 (32%), Gaps = 26/169 (15%)

Query: 423 TPLQLAAEGGHANVVRVLVKAGASCTD--------ENKTGFTAVHLAA---QNGHNQVLE 471
             L      G    +  L++     +         E  TG T +  A    Q+G N  + 
Sbjct: 4   DRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIM 63

Query: 472 EMRSSKALNVYSKKL-----------GVTALHVAAYFGQADTVRELLSHVPGTVKSDPPT 520
            +      +   K L           G +ALH+A        V+ L+ +  G        
Sbjct: 64  PLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVEN--GADVHLRAC 121

Query: 521 GASFLGELGSES--GMTPLHLAAYSGNENVVRLLLNSAGVQVDAQTQEN 567
           G  F    G+    G  PL LAA +   +VV  LL +       +  ++
Sbjct: 122 GRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEATDS 170

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score =  127 bits (322), Expect = 3e-34
 Identities = 42/242 (17%), Positives = 80/242 (33%), Gaps = 57/242 (23%)

Query: 319 QTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLV 378
              L  A +    +V ++L D    +D  D +G  P+++A  NN  E+A+  L    + +
Sbjct: 7   GALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAK-ALIDRGADI 65

Query: 379 TATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVR 438
                  +                                    +P   A   G   ++ 
Sbjct: 66  NLQNSISD------------------------------------SPYLYAGAQGRTEILA 89

Query: 439 VLVKAGASCTDE-NKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSK-KLGVTALHVAAY 496
            ++K      ++ N+ G  A+  AA+ GH   ++ +      ++  +   G TAL  A  
Sbjct: 90  YMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVG 149

Query: 497 F-----GQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVRL 551
                    D V+ L+ +           GA     +   SG T +  A   G   + ++
Sbjct: 150 LREGNQLYQDIVKLLMEN-----------GADQ--SIKDNSGRTAMDYANQKGYTEISKI 196

Query: 552 LL 553
           L 
Sbjct: 197 LA 198

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score =  123 bits (311), Expect = 1e-32
 Identities = 52/279 (18%), Positives = 91/279 (32%), Gaps = 88/279 (31%)

Query: 99  KNKIGETPLHLASRNCKAEVVDLLIQFVQNISQEKVLEYVNSVNEDGASALHYACQVTKA 158
           K       L  A++    +V ++L      +         + V+ +G + L+ A      
Sbjct: 2   KTYEVGALLEAANQRDTKKVKEILQDTTYQV---------DEVDTEGNTPLNIAVH---- 48

Query: 159 ELIPITSKEDQKTVKLLLEAGADVSLQTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEI 218
                    D +  K L++ GAD+                                    
Sbjct: 49  -------NNDIEIAKALIDRGADI------------------------------------ 65

Query: 219 SKALNKQTSIGWTPLLIACNRGHMELVNTMLNNHAR-VDVFDQEGRSALHLAAEHGYLKV 277
               N Q SI  +P L A  +G  E++  ML +    ++  ++ G +AL  AAE G++  
Sbjct: 66  ----NLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDN 121

Query: 278 SSGKSLKHSVMSFRLPPHNIIPNGFLVHDHAAVIDILTLRKQTPLHLAA-----EAGQLQ 332
              K L              + +G         ID       T L  A            
Sbjct: 122 V--KLL--------------LEDG------REDIDFQNDFGYTALIEAVGLREGNQLYQD 159

Query: 333 VCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFL 371
           + KLL++ GA     D+ G+  +  A Q  + E+++I  
Sbjct: 160 IVKLLMENGADQSIKDNSGRTAMDYANQKGYTEISKILA 198

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score =  118 bits (299), Expect = 5e-31
 Identities = 43/220 (19%), Positives = 82/220 (37%), Gaps = 34/220 (15%)

Query: 259 DQEGRSALHLAAEHGYLKVSSGKSLKHSVMSFRLPPHNIIPNGFLVHDHAAVIDILTLRK 318
             E  + L  A +    KV                         L  D    +D +    
Sbjct: 3   TYEVGALLEAANQRDTKKVKE----------------------ILQ-DTTYQVDEVDTEG 39

Query: 319 QTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLV 378
            TPL++A     +++ K L+D GA I+  +     P   A      E+    L+     +
Sbjct: 40  NTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGAQGRTEILAYMLKHATPDL 99

Query: 379 TATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGV--ISARNRVTEATPLQLAA-----EG 431
               + G      AA +G +  ++ L++    G   I  +N     T L  A        
Sbjct: 100 NKHNRYGGNALIPAAEKGHIDNVKLLLE---DGREDIDFQND-FGYTALIEAVGLREGNQ 155

Query: 432 GHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLE 471
            + ++V++L++ GA  + ++ +G TA+  A Q G+ ++ +
Sbjct: 156 LYQDIVKLLMENGADQSIKDNSGRTAMDYANQKGYTEISK 195

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score =  114 bits (289), Expect = 1e-29
 Identities = 43/228 (18%), Positives = 82/228 (35%), Gaps = 65/228 (28%)

Query: 56  LLKSGAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCK 115
           L  +    +    +G TP++ A    ++   + L++ G D   +N I ++P   A    +
Sbjct: 25  LQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGAQGR 84

Query: 116 AEVVDLLIQFVQNISQEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLL 175
            E++  ++        +     +N  N  G +AL  A +    +            VKLL
Sbjct: 85  TEILAYML--------KHATPDLNKHNRYGGNALIPAAEKGHID-----------NVKLL 125

Query: 176 LEAG-ADVSLQTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLL 234
           LE G  D+                                        + Q   G+T L+
Sbjct: 126 LEDGREDI----------------------------------------DFQNDFGYTALI 145

Query: 235 IAC-----NRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKV 277
            A      N+ + ++V  ++ N A   + D  GR+A+  A + GY ++
Sbjct: 146 EAVGLREGNQLYQDIVKLLMENGADQSIKDNSGRTAMDYANQKGYTEI 193

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 97.5 bits (244), Expect = 2e-23
 Identities = 25/142 (17%), Positives = 51/142 (35%), Gaps = 14/142 (9%)

Query: 423 TPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVY 482
             L+ A +     V  +L        + +  G T +++A  N   ++ + +    A ++ 
Sbjct: 8   ALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGA-DIN 66

Query: 483 SK-KLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAA 541
            +  +  +    A   G+ + +  +L H               L    +  G   L  AA
Sbjct: 67  LQNSISDSPYLYAGAQGRTEILAYMLKH-----------ATPDL-NKHNRYGGNALIPAA 114

Query: 542 YSGNENVVRLLLNSAGVQVDAQ 563
             G+ + V+LLL      +D Q
Sbjct: 115 EKGHIDNVKLLLEDGREDIDFQ 136

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 78.3 bits (194), Expect = 8e-17
 Identities = 41/193 (21%), Positives = 67/193 (34%), Gaps = 59/193 (30%)

Query: 11  ETPLHIAAR------VKDGDRCALMLLKSGAGPNLTNIAARVKDGDRCALM--------- 55
            TPL+IA         K        L+  GA     +I  +    D    +         
Sbjct: 40  NTPLNIAVHNNDIEIAK-------ALIDRGA-----DINLQNSISDS-PYLYAGAQGRTE 86

Query: 56  ----LLKSGAG-PNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGG-DPMYKNKIGETPLHL 109
               +LK      N     G   +  AA+ G++  ++LLLEDG  D  ++N  G T L  
Sbjct: 87  ILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIE 146

Query: 110 A-----SRNCKAEVVDLLIQFVQNISQEKVLEYVNSVNEDGASALHYACQVTKAELIPIT 164
           A           ++V LL++   +          +  +  G +A+ YA Q          
Sbjct: 147 AVGLREGNQLYQDIVKLLMENGADQ---------SIKDNSGRTAMDYANQ---------- 187

Query: 165 SKEDQKTVKLLLE 177
            K   +  K+L +
Sbjct: 188 -KGYTEISKILAQ 199

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 74.4 bits (184), Expect = 2e-15
 Identities = 18/114 (15%), Positives = 36/114 (31%), Gaps = 15/114 (13%)

Query: 451 NKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSK-KLGVTALHVAAYFGQADTVRELLSH 509
                  +  A Q    +V E ++ +    V      G T L++A +    +  + L+  
Sbjct: 3   TYEVGALLEAANQRDTKKVKEILQDTTY-QVDEVDTEGNTPLNIAVHNNDIEIAKALIDR 61

Query: 510 VPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVRLLLNSAGVQVDAQ 563
                      GA     L +    +P   A   G   ++  +L  A   ++  
Sbjct: 62  -----------GADI--NLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKH 102

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 42.4 bits (101), Expect = 1e-04
 Identities = 13/84 (15%), Positives = 33/84 (39%), Gaps = 22/84 (26%)

Query: 8   KLRETPLHIAARVKDGDRCALMLLKSGAGPNLTNIAARVKDGDRCALMLLKSGAGPNLTT 67
               T L  A  +++G++    ++K                      +L+++GA  ++  
Sbjct: 138 DFGYTALIEAVGLREGNQLYQDIVK----------------------LLMENGADQSIKD 175

Query: 68  DDGQTPVHAAAKYGNLVTLQLLLE 91
           + G+T +  A + G     ++L +
Sbjct: 176 NSGRTAMDYANQKGYTEISKILAQ 199

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score =  124 bits (313), Expect = 2e-33
 Identities = 35/154 (22%), Positives = 69/154 (44%), Gaps = 6/154 (3%)

Query: 319 QTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLV 378
              +H  A  G++      ++    I+ TD++G  P+  AA +    V +  L  + +  
Sbjct: 4   SLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLL-QNGADP 62

Query: 379 TATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGV-ISARNRVTEATPLQLAAEGGHANVV 437
               K   +   +A  +G   +++ L+     GV ++  +     TPL  A  G H   V
Sbjct: 63  QLLGKGRESALSLACSKGYTDIVKMLLD---CGVDVNEYDW-NGGTPLLYAVHGNHVKCV 118

Query: 438 RVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLE 471
           ++L+++GA  T E  +G+ ++ LA   G+  V +
Sbjct: 119 KMLLESGADPTIETDSGYNSMDLAVALGYRSVQQ 152

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score =  119 bits (300), Expect = 2e-31
 Identities = 37/176 (21%), Positives = 63/176 (35%), Gaps = 24/176 (13%)

Query: 229 GWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVSSGKSLKHSVM 288
               +     +G M  + T +     ++  D+EG + L  AA HG + V           
Sbjct: 3   NSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVE--------- 53

Query: 289 SFRLPPHNIIPNGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATD 348
                        FL+  + A   +L   +++ L LA   G   + K+LLD G  ++  D
Sbjct: 54  -------------FLL-QNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYD 99

Query: 349 DQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIEEL 404
             G  P+  A   N  +  +  L    +  T  T  G     +A   G   V + +
Sbjct: 100 WNGGTPLLYAVHGNHVKCVK-MLLESGADPTIETDSGYNSMDLAVALGYRSVQQVI 154

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score =  118 bits (298), Expect = 2e-31
 Identities = 44/209 (21%), Positives = 71/209 (33%), Gaps = 60/209 (28%)

Query: 69  DGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVVDLLIQFVQN 128
                VH  A  G ++ L   +E      + ++ G TPL  A+ + +  VV+ L+Q   +
Sbjct: 2   ANSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGAD 61

Query: 129 ISQEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGADVSLQTKQ 188
                       + +   SAL  AC     +            VK+LL+ G DV      
Sbjct: 62  P---------QLLGKGRESALSLACSKGYTD-----------IVKMLLDCGVDV------ 95

Query: 189 NHETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIACNRGHMELVNTM 248
                                             N+    G TPLL A +  H++ V  +
Sbjct: 96  ----------------------------------NEYDWNGGTPLLYAVHGNHVKCVKML 121

Query: 249 LNNHARVDVFDQEGRSALHLAAEHGYLKV 277
           L + A   +    G +++ LA   GY  V
Sbjct: 122 LESGADPTIETDSGYNSMDLAVALGYRSV 150

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score =  115 bits (292), Expect = 2e-30
 Identities = 41/184 (22%), Positives = 73/184 (39%), Gaps = 19/184 (10%)

Query: 384 DGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKA 443
             +   H  A QG +  +   +  ++  VI+  +     TPL  AA  G   VV  L++ 
Sbjct: 2   ANSLSVHQLAAQGEMLYLATRI--EQENVINHTDE-EGFTPLMWAAAHGQIAVVEFLLQN 58

Query: 444 GASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKA-LNVYSKKLGVTALHVAAYFGQADT 502
           GA      K   +A+ LA   G+  +++ +      +N Y    G T L  A +      
Sbjct: 59  GADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWN-GGTPLLYAVHGNHVKC 117

Query: 503 VRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVRLLLNSAGVQVDA 562
           V+ LL             GA     + ++SG   + LA   G  +V +++  S  +++  
Sbjct: 118 VKMLLES-----------GADP--TIETDSGYNSMDLAVALGYRSVQQVIE-SHLLKLLQ 163

Query: 563 QTQE 566
             +E
Sbjct: 164 NIKE 167

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score =  109 bits (274), Expect = 5e-28
 Identities = 43/196 (21%), Positives = 69/196 (35%), Gaps = 30/196 (15%)

Query: 189 NHETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIACNRGHMELVNTM 248
            +  + H  A  G    L   +EQ     I    N     G+TPL+ A   G + +V  +
Sbjct: 2   ANSLSVHQLAAQGEMLYLATRIEQ--ENVI----NHTDEEGFTPLMWAAAHGQIAVVEFL 55

Query: 249 LNNHARVDVFDQEGRSALHLAAEHGYLKVSSGKSLKHSVMSFRLPPHNIIPNGFLVHDHA 308
           L N A   +  +   SAL LA   GY  +                         L+ D  
Sbjct: 56  LQNGADPQLLGKGRESALSLACSKGYTDIVK----------------------MLL-DCG 92

Query: 309 AVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQ 368
             ++       TPL  A     ++  K+LL+ GA      D G   + +A    +  V Q
Sbjct: 93  VDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQ 152

Query: 369 IFLRAHPSLVTATTKD 384
           + + +H   +    K+
Sbjct: 153 V-IESHLLKLLQNIKE 167

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score =  108 bits (273), Expect = 7e-28
 Identities = 39/207 (18%), Positives = 74/207 (35%), Gaps = 60/207 (28%)

Query: 55  MLLKSGAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNC 114
             ++     N T ++G TP+  AA +G +  ++ LL++G DP    K  E+ L LA    
Sbjct: 21  TRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKG 80

Query: 115 KAEVVDLLIQFVQNISQEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKL 174
             ++V +L+    +         VN  + +G + L YA      +            VK+
Sbjct: 81  YTDIVKMLLDCGVD---------VNEYDWNGGTPLLYAVHGNHVK-----------CVKM 120

Query: 175 LLEAGADVSLQTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLL 234
           LLE+GAD                                           +T  G+  + 
Sbjct: 121 LLESGADP----------------------------------------TIETDSGYNSMD 140

Query: 235 IACNRGHMELVNTMLNNHARVDVFDQE 261
           +A   G+  +   + ++  ++    +E
Sbjct: 141 LAVALGYRSVQQVIESHLLKLLQNIKE 167

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 85.1 bits (212), Expect = 1e-19
 Identities = 33/126 (26%), Positives = 48/126 (38%), Gaps = 22/126 (17%)

Query: 12  TPLHIAAR------VKDGDRCALMLLKSGAGPNLTN--------IAARVKDGDRCALMLL 57
           TPL  AA       V+        LL++GA P L          +A   K       MLL
Sbjct: 38  TPLMWAAAHGQIAVVE-------FLLQNGADPQLLGKGRESALSLACS-KGYTDIVKMLL 89

Query: 58  KSGAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAE 117
             G   N    +G TP+  A    ++  +++LLE G DP  +   G   + LA       
Sbjct: 90  DCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRS 149

Query: 118 VVDLLI 123
           V  ++ 
Sbjct: 150 VQQVIE 155

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 57.0 bits (139), Expect = 8e-10
 Identities = 25/99 (25%), Positives = 36/99 (36%), Gaps = 10/99 (10%)

Query: 11  ETPLHIAARVKDGDRCALMLLKSGAGPNLTN--------IAARVKDGDRCALMLLKSGAG 62
           E+ L +A   K       MLL  G   N  +         A    +  +C  MLL+SGA 
Sbjct: 70  ESALSLACS-KGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVH-GNHVKCVKMLLESGAD 127

Query: 63  PNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNK 101
           P + TD G   +  A   G     Q++       +   K
Sbjct: 128 PTIETDSGYNSMDLAVALGYRSVQQVIESHLLKLLQNIK 166

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score =  126 bits (318), Expect = 3e-33
 Identities = 50/323 (15%), Positives = 80/323 (24%), Gaps = 91/323 (28%)

Query: 223 NKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVSSGKS 282
           ++    G    LI    GH           A  DV   E  +    AA     +  S   
Sbjct: 9   SRTAGEGAMEYLIEWKDGHSPSWVPSSYIAA--DV-VSEYETPWWTAARKADEQALS--- 62

Query: 283 LKHSVMSFRLPPHNIIPNGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGA 342
                               L+ D    +D +    +T L   A  G  +  +LL + GA
Sbjct: 63  -------------------QLLED--RDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGA 101

Query: 343 SIDATDDQ-GQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVI 401
            +D  D + G   +H+AA    PEV +  +    + +    + G T              
Sbjct: 102 DLDHRDMRGGLTALHMAAGYVRPEVVEALV-ELGADIEVEDERGLT-------------- 146

Query: 402 EELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLA 461
                                  L+LA E          ++ G             V   
Sbjct: 147 ----------------------ALELAREILKTTPKGNPMQFGR---RIGLEKVINVLEG 181

Query: 462 AQNGHNQVLEEMRSSKALNVYSKKLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTG 521
               + +V E       +    +  G    ++  +    D       HV   V  D    
Sbjct: 182 QVFEYAEVDE-------IVE-KRGKGKDVEYLVRWKDGGDCEWVKGVHVAEDVAKD---- 229

Query: 522 ASFLGELGSESGMTPLHLAAYSG 544
                          L  A    
Sbjct: 230 -----------YEDGLEYAVAES 241

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score =  126 bits (318), Expect = 3e-33
 Identities = 51/306 (16%), Positives = 93/306 (30%), Gaps = 80/306 (26%)

Query: 64  NLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVVDLLI 123
           + T  +G        K G+  +         D        ETP   A+R    + +  L+
Sbjct: 9   SRTAGEGAMEYLIEWKDGHSPSWVPSSYIAAD---VVSEYETPWWTAARKADEQALSQLL 65

Query: 124 QFVQNISQEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGADVS 183
           +             V++V+E+G +AL +   +   +            V+LL EAGAD+ 
Sbjct: 66  EDRD----------VDAVDENGRTALLFVAGLGSDK-----------CVRLLAEAGADLD 104

Query: 184 LQTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIACNRGHME 243
            +  +                                        G T L +A      E
Sbjct: 105 HRDMRG---------------------------------------GLTALHMAAGYVRPE 125

Query: 244 LVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKV-----SSGKSLKHSVMSFRLPPHNII 298
           +V  ++   A ++V D+ G +AL LA E             G+ +    +   L      
Sbjct: 126 VVEALVELGADIEVEDERGLTALELAREILKTTPKGNPMQFGRRIGLEKVINVLEGQV-- 183

Query: 299 PNGFLVHDHAAVIDILTLRK--QTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIH 356
                  ++A V +I+  R   +   +L           +     A   A D +    + 
Sbjct: 184 ------FEYAEVDEIVEKRGKGKDVEYLVRWKDGGDCEWVKGVHVAEDVAKDYED--GLE 235

Query: 357 VAAQNN 362
            A   +
Sbjct: 236 YAVAES 241

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score =  122 bits (308), Expect = 8e-32
 Identities = 38/237 (16%), Positives = 69/237 (29%), Gaps = 33/237 (13%)

Query: 319 QTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLV 378
                +  + G          + A + +   + + P   AA+    +     L      V
Sbjct: 16  AMEYLIEWKDGHSPSWVPSSYIAADVVS---EYETPWWTAARKADEQALSQLL--EDRDV 70

Query: 379 TATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGV-ISARNRVTEATPLQLAAEGGHANVV 437
            A  ++G T     A  GS   +  L +   +G  +  R+     T L +AA      VV
Sbjct: 71  DAVDENGRTALLFVAGLGSDKCVRLLAE---AGADLDHRDMRGGLTALHMAAGYVRPEVV 127

Query: 438 RVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLGVTALHVAAYF 497
             LV+ GA    E++ G TA+ LA +                 +  +K  V  +     F
Sbjct: 128 EALVELGADIEVEDERGLTALELAREILKTTPKGNPMQFGR-RIGLEK--VINVLEGQVF 184

Query: 498 GQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVRLLLN 554
             A+    +                          G    +L  +    +   +   
Sbjct: 185 EYAEVDEIVEKR---------------------GKGKDVEYLVRWKDGGDCEWVKGV 220

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score =  111 bits (280), Expect = 5e-28
 Identities = 51/368 (13%), Positives = 88/368 (23%), Gaps = 130/368 (35%)

Query: 103 GETPLHLASRNCKAEVVDLLIQFVQNISQEKVLEYVNSVNEDGASALHYACQVTKAELIP 162
           GE    + SR                               +GA       +   +    
Sbjct: 1   GEVNKIIGSRT----------------------------AGEGAMEYLIEWKDGHSPS-- 30

Query: 163 ITSKEDQKTVKLLLEAGADVSLQTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKAL 222
                            ADV                    ++                  
Sbjct: 31  ---------WVPSSYIAADV-------------------VSE------------------ 44

Query: 223 NKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVSSGKS 282
                   TP   A  +   + ++ +L     VD  D+ GR+AL   A  G  K      
Sbjct: 45  ------YETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVR--- 94

Query: 283 LKHSVMSFRLPPHNIIPNGFLVHDHAAVIDILTLR-KQTPLHLAAEAGQLQVCKLLLDLG 341
                               L  +  A +D   +R   T LH+AA   + +V + L++LG
Sbjct: 95  -------------------LLA-EAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELG 134

Query: 342 ASIDATDDQGQKPIHVAAQNNFPEVAQIFLR--AHPSLVTATTKDGNTCAHIAAMQGSVG 399
           A I+  D++G   + +A +          ++      L      +         +     
Sbjct: 135 ADIEVEDERGLTALELAREILKTTPKGNPMQFGRRIGL------EKVINVLEGQVFEYAE 188

Query: 400 VIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDEN-KTGFTAV 458
           V E + K    G               L       +   V     A   ++  K     +
Sbjct: 189 VDEIVEK-RGKGK----------DVEYLVRWKDGGDCEWVKGVHVA---EDVAKDYEDGL 234

Query: 459 HLAAQNGH 466
             A     
Sbjct: 235 EYAVAESV 242

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 98.4 bits (246), Expect = 2e-23
 Identities = 35/153 (22%), Positives = 51/153 (33%), Gaps = 19/153 (12%)

Query: 413 ISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEE 472
           I +R     A    +  + GH+          A   D      T    AA+    Q L +
Sbjct: 7   IGSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAA---DVVSEYETPWWTAARKADEQALSQ 63

Query: 473 MRSSKALNVYSK-KLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSE 531
           +      +V +  + G TAL   A  G    VR L              GA  L      
Sbjct: 64  L-LEDR-DVDAVDENGRTALLFVAGLGSDKCVRLLAEA-----------GAD-LDHRDMR 109

Query: 532 SGMTPLHLAAYSGNENVVRLLLNSAGVQVDAQT 564
            G+T LH+AA      VV  L+   G  ++ + 
Sbjct: 110 GGLTALHMAAGYVRPEVVEALV-ELGADIEVED 141

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 96.9 bits (242), Expect = 6e-23
 Identities = 43/213 (20%), Positives = 68/213 (31%), Gaps = 39/213 (18%)

Query: 11  ETPLHIAARVKDGDRCALMLLKSGAGPNLTN--------IAARVKDGDRCALMLLKSGAG 62
           ETP   AAR    D  AL  L      +  +          A     D+C  +L ++GA 
Sbjct: 46  ETPWWTAAR--KADEQALSQLLEDRDVDAVDENGRTALLFVAG-LGSDKCVRLLAEAGAD 102

Query: 63  PNLT-TDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVVDL 121
            +      G T +H AA Y     ++ L+E G D   +++ G T L LA    K      
Sbjct: 103 LDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREILKTTPKGN 162

Query: 122 LIQFVQNISQEKVLEY-------------VNSVNEDGASALHYACQVTKAELIPITSKED 168
            +QF + I  EKV+               +      G    +               K+ 
Sbjct: 163 PMQFGRRIGLEKVINVLEGQVFEYAEVDEIVEKRGKGKDVEYLV-----------RWKDG 211

Query: 169 QKTVKLLLEAGADVSLQTKQNHETAFHYCAVAG 201
                +     A+      +++E    Y     
Sbjct: 212 GDCEWVKGVHVAED---VAKDYEDGLEYAVAES 241

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 47.2 bits (113), Expect = 5e-06
 Identities = 11/105 (10%), Positives = 19/105 (18%), Gaps = 35/105 (33%)

Query: 454 GFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLGVTALHVAAYFGQADTVRELLSHVPGT 513
           G     + ++                       G     +    G + +           
Sbjct: 1   GEVNKIIGSRTAGE-------------------GAMEYLIEWKDGHSPSWVPSSYI---- 37

Query: 514 VKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVRLLLNSAGV 558
                                TP   AA   +E  +  LL    V
Sbjct: 38  ------------AADVVSEYETPWWTAARKADEQALSQLLEDRDV 70

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score =  126 bits (318), Expect = 2e-32
 Identities = 40/225 (17%), Positives = 78/225 (34%), Gaps = 18/225 (8%)

Query: 53  ALMLLKSGAGPNLTTD-DGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLA- 110
                 +    N+  D  G TP+H      NL  ++ L++ G + +Y + +GE+ L  A 
Sbjct: 113 NDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAV 172

Query: 111 -SRNC--KAEVVDLLIQFVQNISQEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKE 167
            S N         LL      +            +    + LH+    +        +K 
Sbjct: 173 KSVNNYDSGTFEALLDYLYPCL---------ILEDSMNRTILHHIIITSGMTGCSAAAKY 223

Query: 168 DQKT-VKLLLEAGADVSLQTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQT 226
                +  +++             E+  +       + +L  +        I+  LN Q 
Sbjct: 224 YLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLD---LKWIIANMLNAQD 280

Query: 227 SIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAE 271
           S G T L IA   G++ +V+ +L+  A   + ++ G   +   A 
Sbjct: 281 SNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFGAG 325

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score =  103 bits (259), Expect = 1e-24
 Identities = 47/306 (15%), Positives = 88/306 (28%), Gaps = 34/306 (11%)

Query: 59  SGAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLAS-RNCKAE 117
                N      +  +              L  D  +   +           S  +   E
Sbjct: 52  PVVNDNEQKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQE 111

Query: 118 VVDLLIQFVQNISQEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLE 177
           V D       N++          V+E G + LH+             S  + + VK L++
Sbjct: 112 VNDAFPNTQLNLNI--------PVDEHGNTPLHWLT-----------SIANLELVKHLVK 152

Query: 178 AGADVSLQTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIAC 237
            G++         E+       + NN         +    +   L  + S+  T L    
Sbjct: 153 HGSNRLYGDN-MGESCLVKAVKSVNNYDSGTFEALLD--YLYPCLILEDSMNRTILHHII 209

Query: 238 NRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVSSGKSLKHSV--MSFRLPPH 295
               M   +     +  +          +    +     + SG + K S           
Sbjct: 210 ITSGMTGCSAAAKYYLDI---------LMGWIVKKQNRPIQSGTNEKESKPNDKNGERKD 260

Query: 296 NIIPNGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPI 355
           +I+ N  L    A +++       T L++AA  G + +   LLD GA     +  G +P+
Sbjct: 261 SILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPV 320

Query: 356 HVAAQN 361
              A  
Sbjct: 321 DFGAGL 326

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 99.3 bits (247), Expect = 5e-23
 Identities = 37/230 (16%), Positives = 69/230 (30%), Gaps = 44/230 (19%)

Query: 319 QTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIF---LRAHP 375
            TPLH       L++ K L+  G++    D+ G+  +  A ++     +  F   L    
Sbjct: 132 NTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLY 191

Query: 376 SLVTATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHAN 435
             +        T  H   +   +                        T    AA+     
Sbjct: 192 PCLILEDSMNRTILHHIIITSGM------------------------TGCSAAAKYYLDI 227

Query: 436 VVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKAL---NVYSK-KLGVTAL 491
           ++  +VK              +            + E    K +    + ++   G T L
Sbjct: 228 LMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCL 287

Query: 492 HVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAA 541
           ++AA  G    V  LL +           GA     + ++SG+ P+   A
Sbjct: 288 NIAARLGNISIVDALLDY-----------GADP--FIANKSGLRPVDFGA 324

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 88.9 bits (220), Expect = 2e-19
 Identities = 45/346 (13%), Positives = 98/346 (28%), Gaps = 50/346 (14%)

Query: 138 VNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGADVSLQTKQNHETAFHYC 197
             +   D              +L         K +K L     + + + K   E      
Sbjct: 12  NENNGTDDNDRTAGPIITFTHDLTSDFLSSPLKIMKALPSPVVNDN-EQKMKLEAFLQRL 70

Query: 198 AVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLL-IACNRGHMELVNTMLNNHARVD 256
                 ++ T +         S   N +          ++ +    E+ +   N    ++
Sbjct: 71  LFPEIQEMPTSLNND------SSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLN 124

Query: 257 V-FDQEGRSALHLAAEHGYLKVSSGKSLKHSVMSFRLPPHNIIPNGFLVHDHAAVIDILT 315
           +  D+ G + LH       L++                         LV  H +      
Sbjct: 125 IPVDEHGNTPLHWLTSIANLELVK----------------------HLV-KHGSNRLYGD 161

Query: 316 LRKQTPLHLAAEAG----QLQVCKLLLDLGASIDATDDQGQKPIHVAAQNN--------- 362
              ++ L  A ++           LL  L   +   D   +  +H     +         
Sbjct: 162 NMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAA 221

Query: 363 --FPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIEELM--KFDRSGVISARNR 418
             + ++   ++    +    +  +                I E +  K+  + +++A++ 
Sbjct: 222 KYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDS 281

Query: 419 VTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQN 464
               T L +AA  G+ ++V  L+  GA     NK+G   V   A  
Sbjct: 282 -NGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFGAGL 326

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 81.6 bits (201), Expect = 4e-17
 Identities = 37/263 (14%), Positives = 79/263 (30%), Gaps = 32/263 (12%)

Query: 319 QTPLHLAAEAGQLQVCKLLLDLGASIDATD-DQGQKPIHVAAQNNFPEVAQIFLRAHPSL 377
           +  L         ++   L +  ++ ++      Q+  HV+  +   EV   F     +L
Sbjct: 64  EAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNL 123

Query: 378 VTATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGV-ISARNRVTEATPLQLAAEGGHA-- 434
                + GNT  H      ++ +++ L+K    G      +     + L  A +  +   
Sbjct: 124 NIPVDEHGNTPLHWLTSIANLELVKHLVKH---GSNRLYGDN-MGESCLVKAVKSVNNYD 179

Query: 435 -NVVRVLVKAGASCTDE-NKTGFTAVHLAAQNGHN------------QVLEEMRSSKALN 480
                 L+     C    +    T +H                     ++  +   +   
Sbjct: 180 SGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRP 239

Query: 481 VYSKKLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLA 540
           + S      +        + D++ E L               + +      +G T L++A
Sbjct: 240 IQSGTNEKESKPNDKNGERKDSILENLDL---------KWIIANMLNAQDSNGDTCLNIA 290

Query: 541 AYSGNENVVRLLLNSAGVQVDAQ 563
           A  GN ++V  LL   G      
Sbjct: 291 ARLGNISIVDALL-DYGADPFIA 312

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 46.6 bits (110), Expect = 1e-05
 Identities = 14/115 (12%), Positives = 29/115 (25%), Gaps = 12/115 (10%)

Query: 449 DENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLGVTALHVAAYFGQADTVRELLS 508
           ++       +         ++   + +  +                ++      V +   
Sbjct: 58  EQKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAF- 116

Query: 509 HVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVRLLLNSAGVQVDAQ 563
                    P T  + L     E G TPLH      N  +V+ L+   G      
Sbjct: 117 ---------PNTQLN-LNIPVDEHGNTPLHWLTSIANLELVKHLV-KHGSNRLYG 160

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score =  119 bits (302), Expect = 7e-32
 Identities = 53/192 (27%), Positives = 81/192 (42%), Gaps = 39/192 (20%)

Query: 319 QTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLV 378
              L  AA AG+    ++L+  GA ++A D  G  P+H+AA N   E+ ++ L  + + V
Sbjct: 15  GKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLL-KNGADV 73

Query: 379 TATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVR 438
            A    G                                     TPL+LAA  GH  +V 
Sbjct: 74  NAVDHAGM------------------------------------TPLRLAALFGHLEIVE 97

Query: 439 VLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSK-KLGVTALHVAAYF 497
           VL+K GA     +  G T +HLAA  GH +++E +  + A +V ++ K G TA  ++   
Sbjct: 98  VLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGA-DVNAQDKFGKTAFDISIDN 156

Query: 498 GQADTVRELLSH 509
           G  D    L   
Sbjct: 157 GNEDLAEILQKL 168

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score =  113 bits (285), Expect = 2e-29
 Identities = 53/196 (27%), Positives = 86/196 (43%), Gaps = 27/196 (13%)

Query: 213 MSGTEISKALNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEH 272
           M G+      +   S     LL A   G  + V  ++ N A V+  D  G + LHLAA +
Sbjct: 1   MRGSHH---HHHHGSDLGKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFN 57

Query: 273 GYLKVSSGKSLKHSVMSFRLPPHNIIPNGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQ 332
           G+L++                         L+  + A ++ +     TPL LAA  G L+
Sbjct: 58  GHLEIVE----------------------VLL-KNGADVNAVDHAGMTPLRLAALFGHLE 94

Query: 333 VCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIA 392
           + ++LL  GA ++A D +G  P+H+AA     E+ +  L  + + V A  K G T   I+
Sbjct: 95  IVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVE-VLLKNGADVNAQDKFGKTAFDIS 153

Query: 393 AMQGSVGVIEELMKFD 408
              G+  + E L K +
Sbjct: 154 IDNGNEDLAEILQKLN 169

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score =  112 bits (283), Expect = 3e-29
 Identities = 49/209 (23%), Positives = 85/209 (40%), Gaps = 60/209 (28%)

Query: 69  DGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVVDLLIQFVQN 128
           D    +  AA+ G    +++L+ +G D   ++  G TPLHLA+ N   E+V++L++   +
Sbjct: 13  DLGKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGAD 72

Query: 129 ISQEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGADVSLQTKQ 188
           +         N+V+  G + L  A      E            V++LL+ GADV      
Sbjct: 73  V---------NAVDHAGMTPLRLAALFGHLE-----------IVEVLLKNGADV------ 106

Query: 189 NHETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIACNRGHMELVNTM 248
                                             N     G TPL +A   GH+E+V  +
Sbjct: 107 ----------------------------------NANDMEGHTPLHLAAMFGHLEIVEVL 132

Query: 249 LNNHARVDVFDQEGRSALHLAAEHGYLKV 277
           L N A V+  D+ G++A  ++ ++G   +
Sbjct: 133 LKNGADVNAQDKFGKTAFDISIDNGNEDL 161

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score =  107 bits (270), Expect = 2e-27
 Identities = 51/173 (29%), Positives = 78/173 (45%), Gaps = 20/173 (11%)

Query: 383 KDGNTCAHIAAMQGSVGVIEELMKFDRSGV-ISARNRVTEATPLQLAAEGGHANVVRVLV 441
            D       AA  G    +  LM    +G  ++A +  +  TPL LAA  GH  +V VL+
Sbjct: 12  SDLGKKLLEAARAGRDDEVRILMA---NGADVNAEDA-SGWTPLHLAAFNGHLEIVEVLL 67

Query: 442 KAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSK-KLGVTALHVAAYFGQA 500
           K GA     +  G T + LAA  GH +++E +  + A +V +    G T LH+AA FG  
Sbjct: 68  KNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGA-DVNANDMEGHTPLHLAAMFGHL 126

Query: 501 DTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVRLLL 553
           + V  LL +           GA        + G T   ++  +GNE++  +L 
Sbjct: 127 EIVEVLLKN-----------GADV--NAQDKFGKTAFDISIDNGNEDLAEILQ 166

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score =  103 bits (260), Expect = 5e-26
 Identities = 50/193 (25%), Positives = 86/193 (44%), Gaps = 29/193 (15%)

Query: 179 GADVSLQTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIACN 238
           G+        +        A AG +D +  ++    G ++    N + + GWTPL +A  
Sbjct: 3   GSHHHHHHGSDLGKKLLEAARAGRDDEVRILMAN--GADV----NAEDASGWTPLHLAAF 56

Query: 239 RGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVSSGKSLKHSVMSFRLPPHNII 298
            GH+E+V  +L N A V+  D  G + L LAA  G+L++                     
Sbjct: 57  NGHLEIVEVLLKNGADVNAVDHAGMTPLRLAALFGHLEIVE------------------- 97

Query: 299 PNGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVA 358
               L+  + A ++   +   TPLHLAA  G L++ ++LL  GA ++A D  G+    ++
Sbjct: 98  ---VLL-KNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDIS 153

Query: 359 AQNNFPEVAQIFL 371
             N   ++A+I  
Sbjct: 154 IDNGNEDLAEILQ 166

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score =  101 bits (254), Expect = 4e-25
 Identities = 50/143 (34%), Positives = 72/143 (50%), Gaps = 16/143 (11%)

Query: 423 TPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVY 482
             L  AA  G  + VR+L+  GA    E+ +G+T +HLAA NGH +++E +  + A +V 
Sbjct: 16  KKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGA-DVN 74

Query: 483 SK-KLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAA 541
           +    G+T L +AA FG  + V  LL +           GA          G TPLHLAA
Sbjct: 75  AVDHAGMTPLRLAALFGHLEIVEVLLKN-----------GADV--NANDMEGHTPLHLAA 121

Query: 542 YSGNENVVRLLLNSAGVQVDAQT 564
             G+  +V +LL   G  V+AQ 
Sbjct: 122 MFGHLEIVEVLL-KNGADVNAQD 143

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score =  100 bits (251), Expect = 9e-25
 Identities = 46/150 (30%), Positives = 74/150 (49%), Gaps = 21/150 (14%)

Query: 56  LLKSGAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCK 115
           L+ +GA  N     G TP+H AA  G+L  +++LL++G D    +  G TPL LA+    
Sbjct: 33  LMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAALFGH 92

Query: 116 AEVVDLLIQFVQNISQEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLL 175
            E+V++L++   ++         N+ + +G + LH A      E            V++L
Sbjct: 93  LEIVEVLLKNGADV---------NANDMEGHTPLHLAAMFGHLE-----------IVEVL 132

Query: 176 LEAGADVSLQTKQNHETAFHYCAVAGNNDV 205
           L+ GADV+ Q K   +TAF      GN D+
Sbjct: 133 LKNGADVNAQDK-FGKTAFDISIDNGNEDL 161

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 90.1 bits (225), Expect = 3e-21
 Identities = 47/236 (19%), Positives = 80/236 (33%), Gaps = 83/236 (35%)

Query: 103 GETPLHLASRNCKAEVVDLLIQFVQNISQEKVLEYVNSVNEDGASALHYACQVTKAELIP 162
               L  A+R  + + V +L+    ++         N+ +  G + LH A      E   
Sbjct: 14  LGKKLLEAARAGRDDEVRILMANGADV---------NAEDASGWTPLHLAAFNGHLE--- 61

Query: 163 ITSKEDQKTVKLLLEAGADVSLQTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKAL 222
                    V++LL+ GADV                                        
Sbjct: 62  --------IVEVLLKNGADV---------------------------------------- 73

Query: 223 NKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVSSGKS 282
           N     G TPL +A   GH+E+V  +L N A V+  D EG + LHLAA  G+L++     
Sbjct: 74  NAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVE--- 130

Query: 283 LKHSVMSFRLPPHNIIPNGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLL 338
                               L+  + A ++      +T   ++ + G   + ++L 
Sbjct: 131 -------------------VLL-KNGADVNAQDKFGKTAFDISIDNGNEDLAEILQ 166

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 80.5 bits (200), Expect = 6e-18
 Identities = 38/133 (28%), Positives = 64/133 (48%), Gaps = 32/133 (24%)

Query: 11  ETPLHIAAR------VKDGDRCALMLLKSGAGPNLTNIAARVKDGDRCALM--------- 55
            TPLH+AA       V+       +LLK+GA     ++ A    G    L          
Sbjct: 48  WTPLHLAAFNGHLEIVE-------VLLKNGA-----DVNAVDHAG-MTPLRLAALFGHLE 94

Query: 56  ----LLKSGAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLAS 111
               LLK+GA  N    +G TP+H AA +G+L  +++LL++G D   ++K G+T   ++ 
Sbjct: 95  IVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISI 154

Query: 112 RNCKAEVVDLLIQ 124
            N   ++ ++L +
Sbjct: 155 DNGNEDLAEILQK 167

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score =  119 bits (300), Expect = 2e-31
 Identities = 39/229 (17%), Positives = 69/229 (30%), Gaps = 61/229 (26%)

Query: 229 GWTPLLIACNRGHMELVNTMLNNHA-RVDVFDQEGRSALHLAAEHGYLKVSSGKSLKHSV 287
               +     +G ++ +   L      V+  D+ G + L  A+  G ++          V
Sbjct: 2   DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIET---------V 52

Query: 288 MSFRLPPHNIIPNGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDAT 347
                         FL+ +  A   IL   +++ L LA+  G   +  LLL+    I+  
Sbjct: 53  R-------------FLL-EWGADPHILAKERESALSLASTGGYTDIVGLLLERDVDINIY 98

Query: 348 DDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIEELMKF 407
           D  G  P+  A + N  +  +  L A  + +T     G                      
Sbjct: 99  DWNGGTPLLYAVRGNHVKCVE-ALLARGADLTTEADSGY--------------------- 136

Query: 408 DRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFT 456
                          TP+ LA   G+  V +V+          N     
Sbjct: 137 ---------------TPMDLAVALGYRKVQQVIENHILKLFQSNLVPAD 170

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score =  118 bits (299), Expect = 2e-31
 Identities = 37/155 (23%), Positives = 64/155 (41%), Gaps = 7/155 (4%)

Query: 319 QTPLHLAAEAGQLQVCKLLLDLGA-SIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSL 377
              +H  A  G+L   K  L  G   ++  D++G  P+  A+     E  +  L    + 
Sbjct: 3   SLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLL-EWGAD 61

Query: 378 VTATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGV-ISARNRVTEATPLQLAAEGGHANV 436
                K+  +   +A+  G   ++  L++     V I+  +     TPL  A  G H   
Sbjct: 62  PHILAKERESALSLASTGGYTDIVGLLLE---RDVDINIYDW-NGGTPLLYAVRGNHVKC 117

Query: 437 VRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLE 471
           V  L+  GA  T E  +G+T + LA   G+ +V +
Sbjct: 118 VEALLARGADLTTEADSGYTPMDLAVALGYRKVQQ 152

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score =  116 bits (293), Expect = 1e-30
 Identities = 44/209 (21%), Positives = 67/209 (32%), Gaps = 61/209 (29%)

Query: 70  GQTPVHAAAKYGNLVTLQLLLEDGGDPM-YKNKIGETPLHLASRNCKAEVVDLLIQFVQN 128
               +H  A  G L  L+  L  G + +   ++ G TPL  AS   + E V  L+++  +
Sbjct: 2   DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGAD 61

Query: 129 ISQEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGADVSLQTKQ 188
                     + + ++  SAL  A      +            V LLLE   D+      
Sbjct: 62  ---------PHILAKERESALSLASTGGYTD-----------IVGLLLERDVDI------ 95

Query: 189 NHETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIACNRGHMELVNTM 248
                                             N     G TPLL A    H++ V  +
Sbjct: 96  ----------------------------------NIYDWNGGTPLLYAVRGNHVKCVEAL 121

Query: 249 LNNHARVDVFDQEGRSALHLAAEHGYLKV 277
           L   A +      G + + LA   GY KV
Sbjct: 122 LARGADLTTEADSGYTPMDLAVALGYRKV 150

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score =  115 bits (292), Expect = 2e-30
 Identities = 40/185 (21%), Positives = 73/185 (39%), Gaps = 22/185 (11%)

Query: 385 GNTCAHIAAMQGSVGVIEELMKFDRSG--VISARNRVTEATPLQLAAEGGHANVVRVLVK 442
            +   H  A QG +  ++E ++    G  +++  +     TPL  A+  G    VR L++
Sbjct: 2   DSLSIHQLAAQGELDQLKEHLR---KGDNLVNKPDE-RGFTPLIWASAFGEIETVRFLLE 57

Query: 443 AGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKA-LNVYSKKLGVTALHVAAYFGQAD 501
            GA      K   +A+ LA+  G+  ++  +      +N+Y    G T L  A       
Sbjct: 58  WGADPHILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWN-GGTPLLYAVRGNHVK 116

Query: 502 TVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVRLLLNSAGVQVD 561
            V  LL+            GA       ++SG TP+ LA   G   V +++  +  +++ 
Sbjct: 117 CVEALLAR-----------GADL--TTEADSGYTPMDLAVALGYRKVQQVIE-NHILKLF 162

Query: 562 AQTQE 566
                
Sbjct: 163 QSNLV 167

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score =  110 bits (278), Expect = 2e-28
 Identities = 45/196 (22%), Positives = 71/196 (36%), Gaps = 29/196 (14%)

Query: 192 TAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIACNRGHMELVNTMLNN 251
            + H  A  G  D L   L +  G  +   +NK    G+TPL+ A   G +E V  +L  
Sbjct: 4   LSIHQLAAQGELDQLKEHLRK--GDNL---VNKPDERGFTPLIWASAFGEIETVRFLLEW 58

Query: 252 HARVDVFDQEGRSALHLAAEHGYLKVSSGKSLKHSVMSFRLPPHNIIPNGFLVHDHAAVI 311
            A   +  +E  SAL LA+  GY  +                         L+ +    I
Sbjct: 59  GADPHILAKERESALSLASTGGYTDIVG----------------------LLL-ERDVDI 95

Query: 312 DILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFL 371
           +I      TPL  A     ++  + LL  GA +    D G  P+ +A    + +V Q  +
Sbjct: 96  NIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQ-VI 154

Query: 372 RAHPSLVTATTKDGNT 387
             H   +  +      
Sbjct: 155 ENHILKLFQSNLVPAD 170

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score =  110 bits (278), Expect = 2e-28
 Identities = 37/252 (14%), Positives = 73/252 (28%), Gaps = 82/252 (32%)

Query: 103 GETPLHLASRNCKAEVVDLLIQFVQNISQEKVLEYVNSVNEDGASALHYACQVTKAELIP 162
               +H  +   + + +   +         K    VN  +E G + L +A    + E   
Sbjct: 2   DSLSIHQLAAQGELDQLKEHL--------RKGDNLVNKPDERGFTPLIWASAFGEIE--- 50

Query: 163 ITSKEDQKTVKLLLEAGADVSLQTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKAL 222
                   TV+ LLE GAD                                         
Sbjct: 51  --------TVRFLLEWGADP---------------------------------------- 62

Query: 223 NKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVSSGKS 282
           +       + L +A   G+ ++V  +L     ++++D  G + L  A    ++K      
Sbjct: 63  HILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKC----- 117

Query: 283 LKHSVMSFRLPPHNIIPNGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGA 342
               V               L+    A +        TP+ LA   G  +V +++ +   
Sbjct: 118 ----VE-------------ALL-ARGADLTTEADSGYTPMDLAVALGYRKVQQVIENHIL 159

Query: 343 SIDATDDQGQKP 354
            +  ++     P
Sbjct: 160 KLFQSNLVPADP 171

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score =  109 bits (275), Expect = 4e-28
 Identities = 43/210 (20%), Positives = 75/210 (35%), Gaps = 61/210 (29%)

Query: 55  MLLKSGA-GPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRN 113
             L+ G    N   + G TP+  A+ +G + T++ LLE G DP    K  E+ L LAS  
Sbjct: 20  EHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTG 79

Query: 114 CKAEVVDLLIQFVQNISQEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVK 173
              ++V LL++   +I         N  + +G + L YA +               K V+
Sbjct: 80  GYTDIVGLLLERDVDI---------NIYDWNGGTPLLYAVR-----------GNHVKCVE 119

Query: 174 LLLEAGADVSLQTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPL 233
            LL  GAD+                                          +   G+TP+
Sbjct: 120 ALLARGADL----------------------------------------TTEADSGYTPM 139

Query: 234 LIACNRGHMELVNTMLNNHARVDVFDQEGR 263
            +A   G+ ++   + N+  ++   +    
Sbjct: 140 DLAVALGYRKVQQVIENHILKLFQSNLVPA 169

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 85.2 bits (212), Expect = 1e-19
 Identities = 30/131 (22%), Positives = 50/131 (38%), Gaps = 32/131 (24%)

Query: 12  TPLHIAAR------VKDGDRCALMLLKSGAGPNLTNIAARVKDGDRCALM---------- 55
           TPL  A+       V+        LL+ GA P++       K+    AL           
Sbjct: 38  TPLIWASAFGEIETVR-------FLLEWGADPHILA-----KER-ESALSLASTGGYTDI 84

Query: 56  ---LLKSGAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASR 112
              LL+     N+   +G TP+  A +  ++  ++ LL  G D   +   G TP+ LA  
Sbjct: 85  VGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVA 144

Query: 113 NCKAEVVDLLI 123
               +V  ++ 
Sbjct: 145 LGYRKVQQVIE 155

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score =  121 bits (305), Expect = 2e-31
 Identities = 37/268 (13%), Positives = 72/268 (26%), Gaps = 61/268 (22%)

Query: 229 GWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVSSGKSLKHSVM 288
           G   L         +  +  + +  RV  F+    + L  ++  G   +           
Sbjct: 5   GQVSLPPGKRTNLRKTGSERIAHGMRVK-FNPLPLALLLDSSLEGEFDLVQ--------- 54

Query: 289 SFRLPPHNIIPNGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATD 348
                         ++        +      T LH A  AG  ++ K L+  G +++A D
Sbjct: 55  -------------RII-YEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAAD 100

Query: 349 DQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIEELMKFD 408
             G  P+H AA  N  +V +  + +  ++   T  D  T                     
Sbjct: 101 SDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQT--------------------- 139

Query: 409 RSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQ 468
                        A       E G+    + L          NK    A+        ++
Sbjct: 140 -------------AADKCEEMEEGYTQCSQFLYGVQEKMGIMNKGVIYALWDYEPQNDDE 186

Query: 469 VLEEMRSSKALNVYSK-KLGVTALHVAA 495
           +   M+    + +  +          A 
Sbjct: 187 LP--MKEGDCMTIIHREDEDEIEWWWAR 212

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score =  117 bits (296), Expect = 3e-30
 Identities = 33/211 (15%), Positives = 67/211 (31%), Gaps = 25/211 (11%)

Query: 68  DDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVVDLLIQFVQ 127
             GQ  +    +     T    +  G   +  N +    L  +S   + ++V  +I  V 
Sbjct: 3   ITGQVSLPPGKRTNLRKTGSERIAHGMR-VKFNPLPLALLLDSSLEGEFDLVQRIIYEVD 61

Query: 128 NISQEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGADVSLQTK 187
           +          +  N++G +ALH A      E            VK L++ G +V+    
Sbjct: 62  DP---------SLPNDEGITALHNAVCAGHTE-----------IVKFLVQFGVNVNAADS 101

Query: 188 QNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIACNRGHMELVNT 247
            +  T  H  A   N  V   ++E   G  +  A+                 G+ +    
Sbjct: 102 -DGWTPLHCAASCNNVQVCKFLVES--GAAV-FAMTYSDMQTAADKCEEMEEGYTQCSQF 157

Query: 248 MLNNHARVDVFDQEGRSALHLAAEHGYLKVS 278
           +     ++ + ++    AL         ++ 
Sbjct: 158 LYGVQEKMGIMNKGVIYALWDYEPQNDDELP 188

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score =  110 bits (276), Expect = 1e-27
 Identities = 44/294 (14%), Positives = 76/294 (25%), Gaps = 83/294 (28%)

Query: 143 EDGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGADVSLQTKQNHETAFHYCAVAGN 202
             G  +L    +              +KT    +  G  V                    
Sbjct: 3   ITGQVSLPPGKR-----------TNLRKTGSERIAHGMRV-------------------- 31

Query: 203 NDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEG 262
                                K   +    LL +   G  +LV  ++       + + EG
Sbjct: 32  ---------------------KFNPLPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEG 70

Query: 263 RSALHLAAEHGYLKVSSGKSLKHSVMSFRLPPHNIIPNGFLVHDHAAVIDILTLRKQTPL 322
            +ALH A   G+ ++                        FLV      ++       TPL
Sbjct: 71  ITALHNAVCAGHTEIVK----------------------FLV-QFGVNVNAADSDGWTPL 107

Query: 323 HLAAEAGQLQVCKLLLDLGASIDATDDQGQK---PIHVAAQNNFPEVAQIFLRAHPSLVT 379
           H AA    +QVCK L++ GA++ A      +         +  + + +Q FL      + 
Sbjct: 108 HCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQ-FLYGVQEKMG 166

Query: 380 ATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGH 433
              K           Q      +EL   +   +        +      A     
Sbjct: 167 IMNKGVIYALWDYEPQND----DELPMKEGDCMTIIHREDEDEIEWWWARLNDK 216

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score =  108 bits (273), Expect = 4e-27
 Identities = 40/301 (13%), Positives = 73/301 (24%), Gaps = 87/301 (28%)

Query: 103 GETPLHLASRNCKAEVVDLLIQFVQNISQEKVLEYVNSVNEDGASALHYACQVTKAELIP 162
           G+  L    R    +     I     +            N    + L  +    + +   
Sbjct: 5   GQVSLPPGKRTNLRKTGSERIAHGMRVK----------FNPLPLALLLDSSLEGEFD--- 51

Query: 163 ITSKEDQKTVKLLLEAGADVSLQTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKAL 222
                    V+ ++    D S                  N++                  
Sbjct: 52  --------LVQRIIYEVDDPS----------------LPNDE------------------ 69

Query: 223 NKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVSSGKS 282
                 G T L  A   GH E+V  ++     V+  D +G + LH AA    ++V     
Sbjct: 70  ------GITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCK--- 120

Query: 283 LKHSVMSFRLPPHNIIPNGFLVHDHAAV--IDILTLRKQTPLHLAAEAGQLQVCKLLLDL 340
                              FLV   AAV  +    ++         E G  Q  + L  +
Sbjct: 121 -------------------FLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGV 161

Query: 341 GASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGV 400
              +   +      +      N  E+           +     +       A +    G 
Sbjct: 162 QEKMGIMNKGVIYALWDYEPQNDDELP--MKEGDCMTIIHREDEDEIEWWWARLNDKEGY 219

Query: 401 I 401
           +
Sbjct: 220 V 220

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score =  101 bits (255), Expect = 1e-24
 Identities = 30/225 (13%), Positives = 68/225 (30%), Gaps = 35/225 (15%)

Query: 348 DDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIEELMKF 407
           +  GQ  +    + N  +       AH   V             ++++G   +++ +   
Sbjct: 2   EITGQVSLPPGKRTNLRKTGS-ERIAHGMRVKF-NPLPLALLLDSSLEGEFDLVQRI--- 56

Query: 408 DRSGVISARNRVTEA-----TPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAA 462
                I   +  +       T L  A   GH  +V+ LV+ G +    +  G+T +H AA
Sbjct: 57  -----IYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAA 111

Query: 463 QNGHNQVLEEMRSSKALNVYSK----KLGVTALHVAAYFGQADTVRELLSHVPGTVKSDP 518
              + QV + +  S A  V++                  G     + L            
Sbjct: 112 SCNNVQVCKFLVESGA-AVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGV--------- 161

Query: 519 PTGASFLGELGSESGMTPLHLAAYSGNENVVRLLLNSAGVQVDAQ 563
                    + ++  +  L       ++ +   +     + +  +
Sbjct: 162 --QEKM--GIMNKGVIYALWDYEPQNDDEL--PMKEGDCMTIIHR 200

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score =  101 bits (253), Expect = 2e-24
 Identities = 28/186 (15%), Positives = 51/186 (27%), Gaps = 23/186 (12%)

Query: 383 KDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEA--TPLQLAAEGGHANVVRVL 440
             G                 E +          R +        L  ++  G  ++V+ +
Sbjct: 3   ITGQVSLPPGKRTNLRKTGSERIA------HGMRVKFNPLPLALLLDSSLEGEFDLVQRI 56

Query: 441 VKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSK-KLGVTALHVAAYFGQ 499
           +      +  N  G TA+H A   GH ++++ +      NV +    G T LH AA    
Sbjct: 57  IYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGV-NVNAADSDGWTPLHCAASCNN 115

Query: 500 ADTVRELLSHVPGTVKSDPPTGAS-FLGELGSESGMTPLHLAAYSGNENVVRLLLNSAGV 558
               + L+             GA+ F                   G     + L      
Sbjct: 116 VQVCKFLVES-----------GAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLY-GVQE 163

Query: 559 QVDAQT 564
           ++    
Sbjct: 164 KMGIMN 169

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 95.0 bits (237), Expect = 3e-22
 Identities = 28/244 (11%), Positives = 66/244 (27%), Gaps = 46/244 (18%)

Query: 11  ETPLHIAARVKDGDRCALMLLKSGAGPNLTNIAARVKDGDRCALM-------------LL 57
           +  L    R  +  +     +  G                   L+             ++
Sbjct: 6   QVSLPPGKR-TNLRKTGSERIAHGMRVK-------FNPLPLALLLDSSLEGEFDLVQRII 57

Query: 58  KSGAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAE 117
                P+L  D+G T +H A   G+   ++ L++ G +    +  G TPLH A+     +
Sbjct: 58  YEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQ 117

Query: 118 VVDLLIQFVQNISQEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLE 177
           V   L      +     +  +   +   A+      +    +             + L  
Sbjct: 118 VCKFL------VESGAAVFAMTYSDMQTAADKCEEMEEGYTQ-----------CSQFLYG 160

Query: 178 AGADVSLQTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIAC 237
               + +  K     A        ++++       M   +    ++++          A 
Sbjct: 161 VQEKMGIMNK-GVIYALWDYEPQNDDELP------MKEGDCMTIIHRE-DEDEIEWWWAR 212

Query: 238 NRGH 241
               
Sbjct: 213 LNDK 216

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 82.7 bits (205), Expect = 4e-18
 Identities = 22/115 (19%), Positives = 44/115 (38%), Gaps = 15/115 (13%)

Query: 452 KTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLGVTALHVAAYFGQADTVRELLSHVP 511
            TG  ++    +    +   E  +     V    L +  L  ++  G+ D V+ ++    
Sbjct: 3   ITGQVSLPPGKRTNLRKTGSERIAHGM-RVKFNPLPLALLLDSSLEGEFDLVQRIIYE-- 59

Query: 512 GTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVRLLLNSAGVQVDAQTQE 566
                           L ++ G+T LH A  +G+  +V+ L+   GV V+A   +
Sbjct: 60  ---------VDDP--SLPNDEGITALHNAVCAGHTEIVKFLV-QFGVNVNAADSD 102

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score =  118 bits (298), Expect = 2e-31
 Identities = 40/192 (20%), Positives = 71/192 (36%), Gaps = 39/192 (20%)

Query: 319 QTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLV 378
              L  AA  G L+    LL    +++A +  G+  + V    N PE+A+  L    +  
Sbjct: 6   GNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGN-PEIARRLL-LRGANP 63

Query: 379 TATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVR 438
               + G                                       +  AA  G  + ++
Sbjct: 64  DLKDRTGF------------------------------------AVIHDAARAGFLDTLQ 87

Query: 439 VLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSK-KLGVTALHVAAYF 497
            L++  A    E+  G   +HLAA+ GH +V+E +    A NV  +   G TA  +A  +
Sbjct: 88  TLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLY 147

Query: 498 GQADTVRELLSH 509
           G+ + V  + ++
Sbjct: 148 GRNEVVSLMQAN 159

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score =  110 bits (277), Expect = 2e-28
 Identities = 40/212 (18%), Positives = 72/212 (33%), Gaps = 62/212 (29%)

Query: 67  TDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVVDLLIQFV 126
            +     + +AA  G+L  L  LL++  +   +N  G T L +       E+   L+   
Sbjct: 2   AEPWGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGNP-EIARRLLLRG 60

Query: 127 QNISQEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGADVSLQT 186
            N          +  +  G + +H A +    +           T++ LLE  ADV    
Sbjct: 61  ANP---------DLKDRTGFAVIHDAARAGFLD-----------TLQTLLEFQADV---- 96

Query: 187 KQNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIACNRGHMELVN 246
                                               N + + G  PL +A   GH+ +V 
Sbjct: 97  ------------------------------------NIEDNEGNLPLHLAAKEGHLRVVE 120

Query: 247 TMLNNHAR-VDVFDQEGRSALHLAAEHGYLKV 277
            ++ + A  V   + +G +A  LA  +G  +V
Sbjct: 121 FLVKHTASNVGHRNHKGDTACDLARLYGRNEV 152

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score =  103 bits (259), Expect = 5e-26
 Identities = 39/176 (22%), Positives = 71/176 (40%), Gaps = 24/176 (13%)

Query: 229 GWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVSSGKSLKHSVM 288
               L  A  RG +E + ++L N+  V+  +  GR+AL +    G  +++          
Sbjct: 5   WGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKL-GNPEIAR--------- 54

Query: 289 SFRLPPHNIIPNGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATD 348
                         L+    A  D+        +H AA AG L   + LL+  A ++  D
Sbjct: 55  -------------RLL-LRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIED 100

Query: 349 DQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIEEL 404
           ++G  P+H+AA+     V +  ++   S V      G+T   +A + G   V+  +
Sbjct: 101 NEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLM 156

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score =  100 bits (251), Expect = 6e-25
 Identities = 45/175 (25%), Positives = 75/175 (42%), Gaps = 20/175 (11%)

Query: 382 TKDGNTCAHIAAMQGSVGVIEELMKFDRSGV-ISARNRVTEATPLQLAAEGGHANVVRVL 440
            +        AA +G +  +  L++   + V ++A+N     T LQ+   G +  + R L
Sbjct: 2   AEPWGNELASAAARGDLEQLTSLLQ---NNVNVNAQNG-FGRTALQVMKLG-NPEIARRL 56

Query: 441 VKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSK-KLGVTALHVAAYFGQ 499
           +  GA+   +++TGF  +H AA+ G    L+ +   +A +V  +   G   LH+AA  G 
Sbjct: 57  LLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQA-DVNIEDNEGNLPLHLAAKEGH 115

Query: 500 ADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVRLLLN 554
              V  L+ H            AS +G   +  G T   LA   G   VV L+  
Sbjct: 116 LRVVEFLVKH-----------TASNVGH-RNHKGDTACDLARLYGRNEVVSLMQA 158

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 97.1 bits (243), Expect = 8e-24
 Identities = 49/182 (26%), Positives = 67/182 (36%), Gaps = 38/182 (20%)

Query: 11  ETPLHIAARVKDGDRCALMLLKSGAGPNLTNIAARVKDGDRCALM------------LLK 58
              L  AA   D +     LL++       N+ A+   G R AL             LL 
Sbjct: 6   GNELASAAARGDLE-QLTSLLQNNV-----NVNAQNGFG-RTALQVMKLGNPEIARRLLL 58

Query: 59  SGAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEV 118
            GA P+L    G   +H AA+ G L TLQ LLE   D   ++  G  PLHLA++     V
Sbjct: 59  RGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRV 118

Query: 119 VDLLIQFVQNISQEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEA 178
           V+ L+        +     V   N  G +A   A                 + V L+   
Sbjct: 119 VEFLV--------KHTASNVGHRNHKGDTACDLARL-----------YGRNEVVSLMQAN 159

Query: 179 GA 180
           GA
Sbjct: 160 GA 161

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 95.5 bits (239), Expect = 3e-23
 Identities = 46/240 (19%), Positives = 74/240 (30%), Gaps = 83/240 (34%)

Query: 103 GETPLHLASRNCKAEVVDLLIQFVQNISQEKVLEYVNSVNEDGASALHYACQVTKAELIP 162
               L  A+     E +  L+Q   N+         N+ N  G +AL             
Sbjct: 5   WGNELASAAARGDLEQLTSLLQNNVNV---------NAQNGFGRTALQVMKL-------- 47

Query: 163 ITSKEDQKTVKLLLEAGADVSLQTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKAL 222
             + E     + LL  GA+                                         
Sbjct: 48  -GNPE---IARRLLLRGANP---------------------------------------- 63

Query: 223 NKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVSSGKS 282
           + +   G+  +  A   G ++ + T+L   A V++ D EG   LHLAA+ G+L+V     
Sbjct: 64  DLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVE--- 120

Query: 283 LKHSVMSFRLPPHNIIPNGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGA 342
                              FLV   A+ +     +  T   LA   G+ +V  L+   GA
Sbjct: 121 -------------------FLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGA 161

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 89.4 bits (223), Expect = 3e-21
 Identities = 35/142 (24%), Positives = 54/142 (38%), Gaps = 16/142 (11%)

Query: 423 TPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVY 482
             L  AA  G    +  L++   +   +N  G TA+ +    G+ ++   +    A N  
Sbjct: 7   NELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMK-LGNPEIARRLLLRGA-NPD 64

Query: 483 SK-KLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAA 541
            K + G   +H AA  G  DT++ LL              A     +    G  PLHLAA
Sbjct: 65  LKDRTGFAVIHDAARAGFLDTLQTLLEF-----------QADV--NIEDNEGNLPLHLAA 111

Query: 542 YSGNENVVRLLLNSAGVQVDAQ 563
             G+  VV  L+      V  +
Sbjct: 112 KEGHLRVVEFLVKHTASNVGHR 133

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score =  118 bits (299), Expect = 3e-31
 Identities = 37/182 (20%), Positives = 62/182 (34%), Gaps = 13/182 (7%)

Query: 319 QTPLHLAAEAGQLQVCKLLLDLGAS-IDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSL 377
              +      G     +L LD   + ++  DD G  P+H A +     V ++ +    + 
Sbjct: 6   MDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLI-MRGAR 64

Query: 378 VTATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGV-ISARNRVTEATPLQLAAEGGHANV 436
           +    +  +T  H+AA  G   ++++L++       I+A N      PL  A   G   V
Sbjct: 65  INVMNRGDDTPLHLAASHGHRDIVQKLLQ---YKADINAVNE-HGNVPLHYACFWGQDQV 120

Query: 437 VRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLGVTALHVAAY 496
              LV  GA  +  NK G   V  A       + E              L         +
Sbjct: 121 AEDLVANGALVSICNKYGEMPVDKAKAPLRELLRERAEKMGQ------NLNRIPYKDTFW 174

Query: 497 FG 498
            G
Sbjct: 175 KG 176

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score =  115 bits (290), Expect = 5e-30
 Identities = 39/212 (18%), Positives = 68/212 (32%), Gaps = 61/212 (28%)

Query: 67  TDDGQTPVHAAAKYGNLVTLQLLLEDGG-DPMYKNKIGETPLHLASRNCKAEVVDLLIQF 125
           + +    +    + GN V ++L L++   D    +  G +PLH A R  ++ VV++LI  
Sbjct: 2   SPEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMR 61

Query: 126 VQNISQEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGADVSLQ 185
              I         N +N    + LH A      +            V+ LL+  AD+   
Sbjct: 62  GARI---------NVMNRGDDTPLHLAASHGHRD-----------IVQKLLQYKADI--- 98

Query: 186 TKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIACNRGHMELV 245
                                                N     G  PL  AC  G  ++ 
Sbjct: 99  -------------------------------------NAVNEHGNVPLHYACFWGQDQVA 121

Query: 246 NTMLNNHARVDVFDQEGRSALHLAAEHGYLKV 277
             ++ N A V + ++ G   +  A       +
Sbjct: 122 EDLVANGALVSICNKYGEMPVDKAKAPLRELL 153

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score =  114 bits (288), Expect = 8e-30
 Identities = 36/211 (17%), Positives = 69/211 (32%), Gaps = 34/211 (16%)

Query: 259 DQEGRSALHLAAEHGYLKVSSGKSLKHSVMSFRLPPHNIIPNGFLVHDHAAVIDILTLRK 318
             E    +      G                              + +    ++      
Sbjct: 2   SPEFMDDIFTQCREGNAVAVR----------------------LWLDNTENDLNQGDDHG 39

Query: 319 QTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLV 378
            +PLH A   G+  V ++L+  GA I+  +     P+H+AA +   ++ Q  L+ + + +
Sbjct: 40  FSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQ-YKADI 98

Query: 379 TATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGV-ISARNRVTEATPLQLAAEGGHANVV 437
            A  + GN   H A   G   V E+L+    +G  +S  N+     P+  A       + 
Sbjct: 99  NAVNEHGNVPLHYACFWGQDQVAEDLVA---NGALVSICNK-YGEMPVDKAKAPLRELLR 154

Query: 438 RVLVKAGASCTDENKTGFTAVHLAAQNGHNQ 468
               K G    + N+  +         G  +
Sbjct: 155 ERAEKMGQ---NLNRIPY---KDTFWKGTTR 179

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score =  110 bits (277), Expect = 3e-28
 Identities = 37/163 (22%), Positives = 64/163 (39%), Gaps = 5/163 (3%)

Query: 348 DDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIEELMKF 407
             +    I    +       +++L    + +      G +  H A  +G   V+E L+  
Sbjct: 2   SPEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIM- 60

Query: 408 DRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHN 467
            R   I+  NR  + TPL LAA  GH ++V+ L++  A     N+ G   +H A   G +
Sbjct: 61  -RGARINVMNR-GDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQD 118

Query: 468 QVLEEMRSSKALNVYSK-KLGVTALHVAAYFGQADTVRELLSH 509
           QV E++ ++ A  V    K G   +  A    +          
Sbjct: 119 QVAEDLVANGA-LVSICNKYGEMPVDKAKAPLRELLRERAEKM 160

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score =  109 bits (274), Expect = 7e-28
 Identities = 35/183 (19%), Positives = 74/183 (40%), Gaps = 20/183 (10%)

Query: 382 TKDGNTCAHIAAMQGSVGVIEELMKFDRSGV-ISARNRVTEATPLQLAAEGGHANVVRVL 440
           + +          +G+   +   +  D +   ++  +     +PL  A   G + VV +L
Sbjct: 2   SPEFMDDIFTQCREGNAVAVRLWL--DNTENDLNQGDD-HGFSPLHWACREGRSAVVEML 58

Query: 441 VKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSK-KLGVTALHVAAYFGQ 499
           +  GA     N+   T +HLAA +GH  +++++   KA ++ +  + G   LH A ++GQ
Sbjct: 59  IMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKA-DINAVNEHGNVPLHYACFWGQ 117

Query: 500 ADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVRLLLNSAGVQ 559
                +L+++           GA     + ++ G  P+  A     E +        G  
Sbjct: 118 DQVAEDLVAN-----------GALV--SICNKYGEMPVDKAKAPLRELLRERAE-KMGQN 163

Query: 560 VDA 562
           ++ 
Sbjct: 164 LNR 166

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score =  106 bits (268), Expect = 5e-27
 Identities = 41/230 (17%), Positives = 75/230 (32%), Gaps = 73/230 (31%)

Query: 142 NEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGADVSLQTKQNHETAFHYCAVAG 201
           + +    +   C+           + +   V+L L+                        
Sbjct: 2   SPEFMDDIFTQCR-----------EGNAVAVRLWLDNTE--------------------- 29

Query: 202 NNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQE 261
            ND+                 N+    G++PL  AC  G   +V  ++   AR++V ++ 
Sbjct: 30  -NDL-----------------NQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRG 71

Query: 262 GRSALHLAAEHGYLKVSSGKSLKHSVMSFRLPPHNIIPNGFLVHDHAAVIDILTLRKQTP 321
             + LHLAA HG+  +                         L+  + A I+ +      P
Sbjct: 72  DDTPLHLAASHGHRDIVQ----------------------KLL-QYKADINAVNEHGNVP 108

Query: 322 LHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFL 371
           LH A   GQ QV + L+  GA +   +  G+ P+  A       + +   
Sbjct: 109 LHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAKAPLRELLRERAE 158

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score =  105 bits (264), Expect = 2e-26
 Identities = 43/265 (16%), Positives = 72/265 (27%), Gaps = 92/265 (34%)

Query: 12  TPLHIAARVKDGDRCALMLLKSGAGPNLTNIAARVKDGDRCALMLLKSGAGPNLTTDDGQ 71
             +    R  +     L  L +                              N   D G 
Sbjct: 7   DDIFTQCREGNAVAVRL-WLDNTE-------------------------NDLNQGDDHGF 40

Query: 72  TPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVVDLLIQFVQNISQ 131
           +P+H A + G    +++L+  G      N+  +TPLHLA+ +   ++V  L+Q+  +I  
Sbjct: 41  SPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADI-- 98

Query: 132 EKVLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGADVSLQTKQNHE 191
                  N+VNE G   LHYAC   + +             + L+  GA V         
Sbjct: 99  -------NAVNEHGNVPLHYACFWGQDQ-----------VAEDLVANGALV--------- 131

Query: 192 TAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIACNRGHMELVNTMLNN 251
                                          +     G  P+  A       L       
Sbjct: 132 -------------------------------SICNKYGEMPVDKAKAPLRELLRERAEKM 160

Query: 252 HARVDVFDQEGRSALHLAAEHGYLK 276
              ++      R         G  +
Sbjct: 161 GQNLN------RIPYKDTFWKGTTR 179

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score =  100 bits (251), Expect = 9e-25
 Identities = 34/146 (23%), Positives = 60/146 (41%), Gaps = 17/146 (11%)

Query: 423 TPLQLAAEGGHANVVRVLVKAGASCTDE-NKTGFTAVHLAAQNGHNQVLEEMRSSKALNV 481
             +      G+A  VR+ +    +  ++ +  GF+ +H A + G + V+E +    A  +
Sbjct: 7   DDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGA-RI 65

Query: 482 YSK-KLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLA 540
               +   T LH+AA  G  D V++LL +            A       +E G  PLH A
Sbjct: 66  NVMNRGDDTPLHLAASHGHRDIVQKLLQY-----------KADI--NAVNEHGNVPLHYA 112

Query: 541 AYSGNENVVRLLLNSAGVQVDAQTQE 566
            + G + V   L+ + G  V    + 
Sbjct: 113 CFWGQDQVAEDLV-ANGALVSICNKY 137

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 88.6 bits (221), Expect = 1e-20
 Identities = 33/133 (24%), Positives = 51/133 (38%), Gaps = 22/133 (16%)

Query: 11  ETPLHIAAR------VKDGDRCALMLLKSGAGPNLTN--------IAARVKDGDRCALML 56
            +PLH A R      V+       ML+  GA  N+ N        +AA           L
Sbjct: 40  FSPLHWACREGRSAVVE-------MLIMRGARINVMNRGDDTPLHLAAS-HGHRDIVQKL 91

Query: 57  LKSGAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKA 116
           L+  A  N   + G  P+H A  +G     + L+ +G      NK GE P+  A    + 
Sbjct: 92  LQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAKAPLRE 151

Query: 117 EVVDLLIQFVQNI 129
            + +   +  QN+
Sbjct: 152 LLRERAEKMGQNL 164

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 77.5 bits (192), Expect = 7e-17
 Identities = 22/112 (19%), Positives = 41/112 (36%), Gaps = 15/112 (13%)

Query: 454 GFTAVHLAAQNGHNQVLEEMRSSKALNVYSK-KLGVTALHVAAYFGQADTVRELLSHVPG 512
               +    + G+   +     +   ++      G + LH A   G++  V  L+     
Sbjct: 5   FMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMR--- 61

Query: 513 TVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVRLLLNSAGVQVDAQT 564
                   GA     + +    TPLHLAA  G+ ++V+ LL      ++A  
Sbjct: 62  --------GARI--NVMNRGDDTPLHLAASHGHRDIVQKLL-QYKADINAVN 102

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 43.2 bits (103), Expect = 5e-05
 Identities = 9/36 (25%), Positives = 14/36 (38%)

Query: 529 GSESGMTPLHLAAYSGNENVVRLLLNSAGVQVDAQT 564
           GS   M  +      GN   VRL L++    ++   
Sbjct: 1   GSPEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGD 36

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score =  120 bits (302), Expect = 3e-31
 Identities = 39/197 (19%), Positives = 65/197 (32%), Gaps = 11/197 (5%)

Query: 320 TPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVT 379
             L  AA  G+L+V +  +         +++G   +H A       +   FL    + V 
Sbjct: 23  VLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVD-FLITAGANVN 81

Query: 380 ATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGV-ISARNRVTEATPLQLAA--EGGHANV 436
           +    G T  H AA      +   L++    G  I A      AT  +       G+A+ 
Sbjct: 82  SPDSHGWTPLHCAASCNDTVICMALVQ---HGAAIFATTLSDGATAFEKCDPYREGYADC 138

Query: 437 VRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSK-KLGVTALHVAA 495
              L     S    N     A+   +    +++    R  +++ V  +     T    AA
Sbjct: 139 ATYLADVEQSMGLMNSGAVYALWDYSAEFGDELS--FREGESVTVLRRDGPEETDWWWAA 196

Query: 496 YFGQADTV-RELLSHVP 511
             GQ   V R      P
Sbjct: 197 LHGQEGYVPRNYFGLFP 213

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score =  112 bits (282), Expect = 2e-28
 Identities = 49/307 (15%), Positives = 82/307 (26%), Gaps = 89/307 (28%)

Query: 56  LLKSGAGPNLTTD---DGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASR 112
           +L+    P        +    +  AA  G L  +Q  +++  DP   N+ G T LH A  
Sbjct: 4   VLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAIC 63

Query: 113 NCKAEVVDLLIQFVQNISQEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQKTV 172
                +VD LI    N+         NS +  G + LH A                    
Sbjct: 64  GANYSIVDFLITAGANV---------NSPDSHGWTPLHCAASCNDTV-----------IC 103

Query: 173 KLLLEAGADVSLQTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTP 232
             L++ GA +   T  +  TAF  C                                   
Sbjct: 104 MALVQHGAAIFATTLSDGATAFEKCDPYRE------------------------------ 133

Query: 233 LLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVSSGKSLKHSVMSFRL 292
                  G+ +    + +    + + +     AL   +                 +SFR 
Sbjct: 134 -------GYADCATYLADVEQSMGLMNSGAVYALWDYSAEF-----------GDELSFR- 174

Query: 293 PPHNIIPNGFLVHDHAAVIDILTLRK--QTPLHLAAEAGQLQ-VCKLLLDLGASIDATDD 349
                             + +L      +T    AA  GQ   V +    L   +     
Sbjct: 175 --------------EGESVTVLRRDGPEETDWWWAALHGQEGYVPRNYFGLFPRVKPQRS 220

Query: 350 QGQKPIH 356
           + +   H
Sbjct: 221 KVKHHHH 227

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score =  103 bits (260), Expect = 2e-25
 Identities = 35/250 (14%), Positives = 60/250 (24%), Gaps = 64/250 (25%)

Query: 223 NKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVSSGKS 282
            +        LL A   G +E+V   +         ++EG +ALH A       +     
Sbjct: 15  RRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVD--- 71

Query: 283 LKHSVMSFRLPPHNIIPNGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGA 342
                              FL+    A ++       TPLH AA      +C  L+  GA
Sbjct: 72  -------------------FLI-TAGANVNSPDSHGWTPLHCAASCNDTVICMALVQHGA 111

Query: 343 SIDATDDQ-GQKPIHVAA--QNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVG 399
           +I AT    G          +  + + A  +L      +              +      
Sbjct: 112 AIFATTLSDGATAFEKCDPYREGYADCAT-YLADVEQSMGLMNSGAVYALWDYSA----- 165

Query: 400 VIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVH 459
                                              + +        +    +    T   
Sbjct: 166 --------------------------------EFGDELSFREGESVTVLRRDGPEETDWW 193

Query: 460 LAAQNGHNQV 469
            AA +G    
Sbjct: 194 WAALHGQEGY 203

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score =  100 bits (252), Expect = 2e-24
 Identities = 37/236 (15%), Positives = 67/236 (28%), Gaps = 36/236 (15%)

Query: 172 VKLLLEAGADVSLQTKQNH--ETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIG 229
           ++ +L          +            A+ G  +V+   +++    +     ++    G
Sbjct: 1   MRSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKE--MNDP----SQPNEEG 54

Query: 230 WTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVSSGKSLKHSVMS 289
            T L  A    +  +V+ ++   A V+  D  G + LH AA      +            
Sbjct: 55  ITALHNAICGANYSIVDFLITAGANVNSPDSHGWTPLHCAASCNDTVICM---------- 104

Query: 290 FRLPPHNIIPNGFLVHDHAAVIDILTLRK-QTPLHLAAEA--GQLQVCKLLLDLGASIDA 346
                        LV  H A I   TL    T          G       L D+  S+  
Sbjct: 105 ------------ALV-QHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQSMGL 151

Query: 347 TDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIE 402
            +      +   +     E++  F       V        T    AA+ G  G + 
Sbjct: 152 MNSGAVYALWDYSAEFGDELS--FREGESVTVLRRDGPEETDWWWAALHGQEGYVP 205

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 98.9 bits (247), Expect = 9e-24
 Identities = 39/253 (15%), Positives = 67/253 (26%), Gaps = 44/253 (17%)

Query: 30  LLKSGAGPNLTNIAARVKDGDRCALM-------------LLKSGAGPNLTTDDGQTPVHA 76
           +L+    P       R +      L+              +K    P+   ++G T +H 
Sbjct: 4   VLRKAGSPRKAR---RARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHN 60

Query: 77  AAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVVDLLIQFVQNISQEKVLE 136
           A    N   +  L+  G +    +  G TPLH A+      +   L+Q    I       
Sbjct: 61  AICGANYSIVDFLITAGANVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAI------- 113

Query: 137 YVNSVN-EDGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGADVSLQTKQNHETAFH 195
              +    DGA+A        +                 L +    + L         + 
Sbjct: 114 --FATTLSDGATAFEKCDPYREGYA---------DCATYLADVEQSMGLMNSGAVYALWD 162

Query: 196 YCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIACNRGHMELV-NTMLNNHAR 254
           Y   A   D L     +     +     ++     T    A   G    V         R
Sbjct: 163 YS--AEFGDEL--SFREGESVTV----LRRDGPEETDWWWAALHGQEGYVPRNYFGLFPR 214

Query: 255 VDVFDQEGRSALH 267
           V     + +   H
Sbjct: 215 VKPQRSKVKHHHH 227

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 86.9 bits (216), Expect = 2e-19
 Identities = 34/142 (23%), Positives = 51/142 (35%), Gaps = 16/142 (11%)

Query: 416 RNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRS 475
           R R+     L  AA  G   VV+  VK     +  N+ G TA+H A    +  +++ + +
Sbjct: 16  RARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLIT 75

Query: 476 SKALNVYSK-KLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGM 534
           + A NV S    G T LH AA          L+ H           GA+ +       G 
Sbjct: 76  AGA-NVNSPDSHGWTPLHCAASCNDTVICMALVQH-----------GAA-IFATTLSDGA 122

Query: 535 TPLHLAAYS--GNENVVRLLLN 554
           T          G  +    L +
Sbjct: 123 TAFEKCDPYREGYADCATYLAD 144

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 78.1 bits (193), Expect = 2e-16
 Identities = 32/198 (16%), Positives = 49/198 (24%), Gaps = 52/198 (26%)

Query: 11  ETPLHIAARVKDGDRCALMLLKSGAGPNLTNIAARVKDGDRCALMLLKSGAGPNLTTDDG 70
            T LH A                          + V         L+ +GA  N     G
Sbjct: 55  ITALHNAIC--------------------GANYSIVD-------FLITAGANVNSPDSHG 87

Query: 71  QTPVHAAAKYGNLVTLQLLLEDGGDPMYKN-KIGETPLHLASRNCK--AEVVDLLIQFVQ 127
            TP+H AA   + V    L++ G          G T         +  A+    L     
Sbjct: 88  WTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLA---- 143

Query: 128 NISQEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGADVSLQTK 187
                 V + +  +N     AL         E            +         V  +  
Sbjct: 144 -----DVEQSMGLMNSGAVYALWDYSAEFGDE------------LSFREGESVTVLRRDG 186

Query: 188 QNHETAFHYCAVAGNNDV 205
              ET + + A+ G    
Sbjct: 187 -PEETDWWWAALHGQEGY 203

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 76.5 bits (189), Expect = 5e-16
 Identities = 27/135 (20%), Positives = 48/135 (35%), Gaps = 19/135 (14%)

Query: 437 VRVLVKAGASCTDENK---TGFTAVHLAAQNGHNQVLEEMRSSKALNVYSK-KLGVTALH 492
           +R +++   S     +        +  AA  G  +V+++       +     + G+TALH
Sbjct: 1   MRSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMN-DPSQPNEEGITALH 59

Query: 493 VAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVRLL 552
            A        V  L++            GA+         G TPLH AA   +  +   L
Sbjct: 60  NAICGANYSIVDFLITA-----------GANV--NSPDSHGWTPLHCAASCNDTVICMAL 106

Query: 553 LNSAGVQVDAQTQEN 567
           +   G  + A T  +
Sbjct: 107 V-QHGAAIFATTLSD 120

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 66.5 bits (163), Expect = 1e-12
 Identities = 22/118 (18%), Positives = 35/118 (29%), Gaps = 12/118 (10%)

Query: 12  TPLHIAARVKDGDRCALMLLKSGAGPNLTN---------IAARVKDG-DRCALMLLKSGA 61
           TPLH AA   D   C   L++ GA    T               ++G   CA  L     
Sbjct: 89  TPLHCAASCNDTVICMA-LVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQ 147

Query: 62  GPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVV 119
              L        +   +       L     +    + ++   ET    A+ + +   V
Sbjct: 148 SMGLMNSGAVYALWDYSA-EFGDELSFREGESVTVLRRDGPEETDWWWAALHGQEGYV 204

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score =  118 bits (298), Expect = 6e-31
 Identities = 48/274 (17%), Positives = 85/274 (31%), Gaps = 89/274 (32%)

Query: 98  YKNKIGETPLHLASRNCKAEVVDLLIQFVQNISQEKVLEYVNSVNEDGASALHYACQVTK 157
           + +K GE    +       + +D L                N  +    + L  AC    
Sbjct: 3   HMDKNGEIVEKIKDEKSINQNLDFLR---------------NYRDSYNRTPLMVACM--- 44

Query: 158 AELIPITSKEDQKTVKLLLEAGADVSLQTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTE 217
                      +  +  L+E    +                                   
Sbjct: 45  --------LGMENAIDKLVENFDKL----------------------------------- 61

Query: 218 ISKALNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKV 277
                  +   G T L+ A     + +   +L+  + V+  D  G++ L  +   GY ++
Sbjct: 62  -----EDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFGYSEM 116

Query: 278 SSGKSLKHSVMSFRLPPHNIIPNGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLL 337
           S                       FL+ +H A ++   L  +TPL +A++ G+ ++ K L
Sbjct: 117 SY----------------------FLL-EHGANVNDRNLEGETPLIVASKYGRSEIVKKL 153

Query: 338 LDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFL 371
           L+LGA I A D  G      A      EV +IF 
Sbjct: 154 LELGADISARDLTGLTAEASARIFGRQEVIKIFT 187

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score =  115 bits (291), Expect = 5e-30
 Identities = 34/194 (17%), Positives = 80/194 (41%), Gaps = 14/194 (7%)

Query: 318 KQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSL 377
            +    +  E    Q    L       +  D   + P+ VA            +  +   
Sbjct: 8   GEIVEKIKDEKSINQNLDFL------RNYRDSYNRTPLMVACMLGMENAIDKLV-ENFDK 60

Query: 378 VTATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGV-ISARNRVTEATPLQLAAEGGHANV 436
           +     +G+T    A     +G+ E+L+     G  ++ ++  +  TPL  +   G++ +
Sbjct: 61  LEDKDIEGSTALIWAVKNNRLGIAEKLLS---KGSNVNTKDF-SGKTPLMWSIIFGYSEM 116

Query: 437 VRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSK-KLGVTALHVAA 495
              L++ GA+  D N  G T + +A++ G +++++++    A ++ ++   G+TA   A 
Sbjct: 117 SYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGA-DISARDLTGLTAEASAR 175

Query: 496 YFGQADTVRELLSH 509
            FG+ + ++     
Sbjct: 176 IFGRQEVIKIFTEV 189

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score =  111 bits (281), Expect = 1e-28
 Identities = 42/214 (19%), Positives = 69/214 (32%), Gaps = 60/214 (28%)

Query: 64  NLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVVDLLI 123
           N      +TP+  A   G    +  L+E+      K+  G T L  A +N +  + + L+
Sbjct: 29  NYRDSYNRTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLL 88

Query: 124 QFVQNISQEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGADVS 183
               N+         N+ +  G + L ++     +E               LLE GA+V 
Sbjct: 89  SKGSNV---------NTKDFSGKTPLMWSIIFGYSE-----------MSYFLLEHGANV- 127

Query: 184 LQTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIACNRGHME 243
                                                  N +   G TPL++A   G  E
Sbjct: 128 ---------------------------------------NDRNLEGETPLIVASKYGRSE 148

Query: 244 LVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKV 277
           +V  +L   A +   D  G +A   A   G  +V
Sbjct: 149 IVKKLLELGADISARDLTGLTAEASARIFGRQEV 182

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score =  109 bits (274), Expect = 1e-27
 Identities = 41/216 (18%), Positives = 83/216 (38%), Gaps = 36/216 (16%)

Query: 189 NHETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIACNRGHMELVNTM 248
           N E           N             +  +  N + S   TPL++AC  G    ++ +
Sbjct: 7   NGEIVEKIKDEKSINQ----------NLDFLR--NYRDSYNRTPLMVACMLGMENAIDKL 54

Query: 249 LNNHARVDVFDQEGRSALHLAAEHGYLKVSSGKSLKHSVMSFRLPPHNIIPNGFLVHDHA 308
           + N  +++  D EG +AL  A ++  L ++                        L+    
Sbjct: 55  VENFDKLEDKDIEGSTALIWAVKNNRLGIAE----------------------KLL-SKG 91

Query: 309 AVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQ 368
           + ++      +TPL  +   G  ++   LL+ GA+++  + +G+ P+ VA++    E+ +
Sbjct: 92  SNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVK 151

Query: 369 IFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIEEL 404
             L    + ++A    G T    A + G   VI+  
Sbjct: 152 KLL-ELGADISARDLTGLTAEASARIFGRQEVIKIF 186

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score =  107 bits (269), Expect = 5e-27
 Identities = 42/276 (15%), Positives = 85/276 (30%), Gaps = 89/276 (32%)

Query: 68  DDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVVDLLIQFVQ 127
            +G+       +      L  L        Y++    TPL +A        +D L++   
Sbjct: 6   KNGEIVEKIKDEKSINQNLDFLRN------YRDSYNRTPLMVACMLGMENAIDKLVENFD 59

Query: 128 NISQEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGADVSLQTK 187
            +            + +G++AL +A +                  + LL  G++V     
Sbjct: 60  KL---------EDKDIEGSTALIWAVKNN--------RLG---IAEKLLSKGSNV----- 94

Query: 188 QNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIACNRGHMELVNT 247
                                              N +   G TPL+ +   G+ E+   
Sbjct: 95  -----------------------------------NTKDFSGKTPLMWSIIFGYSEMSYF 119

Query: 248 MLNNHARVDVFDQEGRSALHLAAEHGYLKVSSGKSLKHSVMSFRLPPHNIIPNGFLVHDH 307
           +L + A V+  + EG + L +A+++G  ++                         L+ + 
Sbjct: 120 LLEHGANVNDRNLEGETPLIVASKYGRSEIVK----------------------KLL-EL 156

Query: 308 AAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGAS 343
            A I    L   T    A   G+ +V K+  ++  +
Sbjct: 157 GADISARDLTGLTAEASARIFGRQEVIKIFTEVRRA 192

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score =  100 bits (253), Expect = 7e-25
 Identities = 45/182 (24%), Positives = 74/182 (40%), Gaps = 25/182 (13%)

Query: 383 KDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVK 442
           K+G     I   +     ++ L         + R+     TPL +A   G  N +  LV+
Sbjct: 6   KNGEIVEKIKDEKSINQNLDFL--------RNYRDS-YNRTPLMVACMLGMENAIDKLVE 56

Query: 443 AGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSK-KLGVTALHVAAYFGQAD 501
                 D++  G TA+  A +N    + E++ S  + NV +K   G T L  +  FG ++
Sbjct: 57  NFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGS-NVNTKDFSGKTPLMWSIIFGYSE 115

Query: 502 TVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVRLLLNSAGVQVD 561
               LL H           GA+      +  G TPL +A+  G   +V+ LL   G  + 
Sbjct: 116 MSYFLLEH-----------GANV--NDRNLEGETPLIVASKYGRSEIVKKLL-ELGADIS 161

Query: 562 AQ 563
           A+
Sbjct: 162 AR 163

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score =  100 bits (252), Expect = 1e-24
 Identities = 39/219 (17%), Positives = 81/219 (36%), Gaps = 35/219 (15%)

Query: 229 GWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVSSGKSLKHSVM 288
           G     I   +   + ++ + N        D   R+ L +A   G               
Sbjct: 8   GEIVEKIKDEKSINQNLDFLRNYR------DSYNRTPLMVACMLGMENAID--------- 52

Query: 289 SFRLPPHNIIPNGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATD 348
                         LV ++   ++   +   T L  A +  +L + + LL  G++++  D
Sbjct: 53  -------------KLV-ENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKD 98

Query: 349 DQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIEELMKFD 408
             G+ P+  +    + E++   L  H + V     +G T   +A+  G   ++++L++  
Sbjct: 99  FSGKTPLMWSIIFGYSEMSYFLL-EHGANVNDRNLEGETPLIVASKYGRSEIVKKLLE-- 155

Query: 409 RSGV-ISARNRVTEATPLQLAAEGGHANVVRVLVKAGAS 446
             G  ISAR+  T  T    A   G   V+++  +   +
Sbjct: 156 -LGADISARDL-TGLTAEASARIFGRQEVIKIFTEVRRA 192

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 95.5 bits (239), Expect = 6e-23
 Identities = 42/208 (20%), Positives = 69/208 (33%), Gaps = 47/208 (22%)

Query: 11  ETPLHIAAR------------VKDGDRC-ALMLLKSGAGPNLTNIAARVKDGDRCALMLL 57
           E    I                +D      LM            +A      +     L+
Sbjct: 9   EIVEKIKDEKSINQNLDFLRNYRDSYNRTPLM------------VACM-LGMENAIDKLV 55

Query: 58  KSGAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAE 117
           ++         +G T +  A K   L   + LL  G +   K+  G+TPL  +     +E
Sbjct: 56  ENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFGYSE 115

Query: 118 VVDLLIQFVQNISQEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLE 177
           +   L++   N+         N  N +G + L  A +  ++E            VK LLE
Sbjct: 116 MSYFLLEHGANV---------NDRNLEGETPLIVASKYGRSE-----------IVKKLLE 155

Query: 178 AGADVSLQTKQNHETAFHYCAVAGNNDV 205
            GAD+S +      TA     + G  +V
Sbjct: 156 LGADISARDL-TGLTAEASARIFGRQEV 182

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 79.4 bits (197), Expect = 3e-17
 Identities = 32/132 (24%), Positives = 50/132 (37%), Gaps = 32/132 (24%)

Query: 11  ETPLHIAAR------VKDGDRCALMLLKSGAGPNLTNIAARVKDGDRCALM--------- 55
            T L  A +       +        LL  G+     N+  +   G +  LM         
Sbjct: 69  STALIWAVKNNRLGIAE-------KLLSKGS-----NVNTKDFSG-KTPLMWSIIFGYSE 115

Query: 56  ----LLKSGAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLAS 111
               LL+ GA  N    +G+TP+  A+KYG    ++ LLE G D   ++  G T    A 
Sbjct: 116 MSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISARDLTGLTAEASAR 175

Query: 112 RNCKAEVVDLLI 123
              + EV+ +  
Sbjct: 176 IFGRQEVIKIFT 187

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 69.3 bits (171), Expect = 8e-14
 Identities = 22/113 (19%), Positives = 38/113 (33%), Gaps = 20/113 (17%)

Query: 451 NKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLGVTALHVAAYFGQADTVRELLSHV 510
           +K G     +  +   NQ L+ +R+ +           T L VA   G  + + +L+ + 
Sbjct: 5   DKNGEIVEKIKDEKSINQNLDFLRNYRD------SYNRTPLMVACMLGMENAIDKLVEN- 57

Query: 511 PGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVRLLLNSAGVQVDAQ 563
                           E     G T L  A  +    +   LL S G  V+ +
Sbjct: 58  ----------FDKL--EDKDIEGSTALIWAVKNNRLGIAEKLL-SKGSNVNTK 97

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 44.3 bits (106), Expect = 3e-05
 Identities = 20/100 (20%), Positives = 33/100 (33%), Gaps = 32/100 (32%)

Query: 11  ETPLHIAAR------VKDGDRCALMLLKSGAGPNLTNIAARVKDGDRCALM--------- 55
           +TPL  +                  LL+ GA     N+  R  +G    L+         
Sbjct: 102 KTPLMWSIIFGYSEMSY-------FLLEHGA-----NVNDRNLEG-ETPLIVASKYGRSE 148

Query: 56  ----LLKSGAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLE 91
               LL+ GA  +     G T   +A  +G    +++  E
Sbjct: 149 IVKKLLELGADISARDLTGLTAEASARIFGRQEVIKIFTE 188

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score =  114 bits (288), Expect = 5e-30
 Identities = 38/156 (24%), Positives = 64/156 (41%), Gaps = 13/156 (8%)

Query: 318 KQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSL 377
               L  AA  G+++  + LL+ GA+ +A +  G++PI V    +   VA+  L  H + 
Sbjct: 12  SADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMMGSA-RVAE-LLLLHGAE 69

Query: 378 VTATTKDGNTCA-HIAAMQGSVGVIEELMKFDRSGV-ISARNRVTEATPLQLAAEGGHAN 435
                    T   H AA +G +  +  L +   +G  +  R+      P+ LA E GH +
Sbjct: 70  PNCADPATLTRPVHDAAREGFLDTLVVLHR---AGARLDVRDA-WGRLPVDLAEELGHRD 125

Query: 436 VVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLE 471
           V R L  A          G     + A  G + + +
Sbjct: 126 VARYLRAAAG-----GTRGSNHARIDAAEGPSDIPD 156

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score =  102 bits (258), Expect = 6e-26
 Identities = 32/222 (14%), Positives = 63/222 (28%), Gaps = 69/222 (31%)

Query: 57  LKSGAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKA 116
           ++  AG +   +     +  AA  G +  ++ LLE G +P   N  G  P+ +       
Sbjct: 1   MEPAAGSS--MEPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMMGSA- 57

Query: 117 EVVDLLIQFVQNISQEKVLEYVNSVNEDGA-SALHYACQVTKAELIPITSKEDQKTVKLL 175
            V +LL+               N  +       +H A +    +           T+ +L
Sbjct: 58  RVAELLLLHGAE---------PNCADPATLTRPVHDAAREGFLD-----------TLVVL 97

Query: 176 LEAGADVSLQTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLI 235
             AGA +                                        + + + G  P+ +
Sbjct: 98  HRAGARL----------------------------------------DVRDAWGRLPVDL 117

Query: 236 ACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKV 277
           A   GH ++   +             G +   + A  G   +
Sbjct: 118 AEELGHRDVARYLRAAAG-----GTRGSNHARIDAAEGPSDI 154

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score =  101 bits (253), Expect = 3e-25
 Identities = 39/186 (20%), Positives = 64/186 (34%), Gaps = 31/186 (16%)

Query: 218 ISKALNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKV 277
           +  A           L  A  RG +E V  +L   A  +  +  GR  + +    G  +V
Sbjct: 1   MEPAAGSSMEPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSARV 59

Query: 278 SSGKSLKHSVMSFRLPPHNIIPNGFLVHDHAAVIDILTLRKQT-PLHLAAEAGQLQVCKL 336
           +                        L+  H A  +       T P+H AA  G L    +
Sbjct: 60  AE----------------------LLL-LHGAEPNCADPATLTRPVHDAAREGFLDTLVV 96

Query: 337 LLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQG 396
           L   GA +D  D  G+ P+ +A +    +VA+ +LRA       +         I A +G
Sbjct: 97  LHRAGARLDVRDAWGRLPVDLAEELGHRDVAR-YLRAAAGGTRGSNHA-----RIDAAEG 150

Query: 397 SVGVIE 402
              + +
Sbjct: 151 PSDIPD 156

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 96.0 bits (240), Expect = 1e-23
 Identities = 35/143 (24%), Positives = 50/143 (34%), Gaps = 16/143 (11%)

Query: 423 TPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKA-LNV 481
             L  AA  G    VR L++AGA+    N  G   + +    G  +V E +    A  N 
Sbjct: 14  DWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMM-GSARVAELLLLHGAEPNC 72

Query: 482 YSKKLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAA 541
                    +H AA  G  DT+  L              GA    ++    G  P+ LA 
Sbjct: 73  ADPATLTRPVHDAAREGFLDTLVVLHRA-----------GARL--DVRDAWGRLPVDLAE 119

Query: 542 YSGNENVVRLLLNSAGVQVDAQT 564
             G+ +V R L  +A        
Sbjct: 120 ELGHRDVARYLR-AAAGGTRGSN 141

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 90.2 bits (225), Expect = 2e-21
 Identities = 37/231 (16%), Positives = 60/231 (25%), Gaps = 81/231 (35%)

Query: 138 VNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGADVSLQTKQNHETAFHYC 197
             S  E  A  L  A    + E            V+ LLEAGA+                
Sbjct: 5   AGSSMEPSADWLATAAARGRVE-----------EVRALLEAGANP--------------- 38

Query: 198 AVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDV 257
                                    N   S G  P+ +    G   +   +L + A  + 
Sbjct: 39  -------------------------NAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNC 72

Query: 258 FDQEGR-SALHLAAEHGYLKVSSGKSLKHSVMSFRLPPHNIIPNGFLVHDHAAVIDILTL 316
            D       +H AA  G+L                           ++H   A +D+   
Sbjct: 73  ADPATLTRPVHDAAREGFLDTLV-----------------------VLHRAGARLDVRDA 109

Query: 317 RKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVA 367
             + P+ LA E G   V + L         ++        + A     ++ 
Sbjct: 110 WGRLPVDLAEELGHRDVARYLRAAAGGTRGSN-----HARIDAAEGPSDIP 155

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 84.5 bits (210), Expect = 2e-19
 Identities = 36/123 (29%), Positives = 47/123 (38%), Gaps = 12/123 (9%)

Query: 11  ETPLHIAARVKDGDRCALMLLKSGAGPNLTN--------IAARVKDGDRCALMLLKSGAG 62
              L  AA     +     LL++GA PN  N        +        R A +LL  GA 
Sbjct: 13  ADWLATAAARGRVE-EVRALLEAGANPNAPNSYGRRPIQVMMM--GSARVAELLLLHGAE 69

Query: 63  PNLTTDDGQT-PVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVVDL 121
           PN       T PVH AA+ G L TL +L   G     ++  G  P+ LA      +V   
Sbjct: 70  PNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARY 129

Query: 122 LIQ 124
           L  
Sbjct: 130 LRA 132

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 83.3 bits (207), Expect = 5e-19
 Identities = 36/236 (15%), Positives = 57/236 (24%), Gaps = 90/236 (38%)

Query: 99  KNKIGETPLHLASRNCKAEVVDLLIQFVQNISQEKVLEYVNSVNEDGASALHYACQVTKA 158
             +     L  A+   + E V  L++   N          N+ N  G   +         
Sbjct: 8   SMEPSADWLATAAARGRVEEVRALLEAGAN---------PNAPNSYGRRPIQVMMM---- 54

Query: 159 ELIPITSKEDQKTVKLLLEAGADVSLQTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEI 218
                 S       +LLL  GA+                                     
Sbjct: 55  -----GSAR---VAELLLLHGAEP------------------------------------ 70

Query: 219 SKALNKQTSIGWT-PLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKV 277
               N       T P+  A   G ++ +  +    AR+DV D  GR  + LA E G+  V
Sbjct: 71  ----NCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDV 126

Query: 278 SSGKSLKHSVMSFRLPPHNIIPNGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQV 333
           +                       +L    A               + A  G   +
Sbjct: 127 AR----------------------YLR-AAAGGTR-----GSNHARIDAAEGPSDI 154

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 74.1 bits (183), Expect = 8e-16
 Identities = 21/123 (17%), Positives = 39/123 (31%), Gaps = 25/123 (20%)

Query: 11  ETPLHIAARVKDGDRCALMLLKSGAGPNLTNIAARVKDGDRCALM-------------LL 57
             P+ +        R A +LL  GA PN  +            +              L 
Sbjct: 46  RRPIQVMMM--GSARVAELLLLHGAEPNCAD-----PATLTRPVHDAAREGFLDTLVVLH 98

Query: 58  KSGAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAE 117
           ++GA  ++    G+ PV  A + G+    + L    G        G     + +    ++
Sbjct: 99  RAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAAAGGTR-----GSNHARIDAAEGPSD 153

Query: 118 VVD 120
           + D
Sbjct: 154 IPD 156

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 56.7 bits (138), Expect = 7e-10
 Identities = 19/84 (22%), Positives = 29/84 (34%), Gaps = 15/84 (17%)

Query: 483 SKKLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAY 542
           S +     L  AA  G+ + VR LL             GA+      +  G  P+ +   
Sbjct: 8   SMEPSADWLATAAARGRVEEVRALLEA-----------GANP--NAPNSYGRRPIQVMMM 54

Query: 543 SGNENVVRLLLNSAGVQVDAQTQE 566
            G+  V  LLL   G + +     
Sbjct: 55  -GSARVAELLL-LHGAEPNCADPA 76

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score =  113 bits (285), Expect = 3e-29
 Identities = 35/193 (18%), Positives = 59/193 (30%), Gaps = 26/193 (13%)

Query: 319 QTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLV 378
                +  + G          + A + +   + + P   AA+    +     L      V
Sbjct: 15  AMEYLIEWKDGHSPSWVPSSYIAADVVS---EYETPWWTAARKADEQALSQLL--EDRDV 69

Query: 379 TATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGV-ISARNRVTEATPLQLAAEGGHANVV 437
            A  ++G T     A  GS   +  L +   +G  +  R+     T L +AA      VV
Sbjct: 70  DAVDENGRTALLFVAGLGSDKCVRLLAE---AGADLDHRDMRGGLTALHMAAGYVRPEVV 126

Query: 438 RVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLGVTALHVAAYF 497
             LV+ GA    E++ G TA+ LA +                           +      
Sbjct: 127 EALVELGADIEVEDERGLTALELAREILKTTPKG-----------------NPMQFGRRI 169

Query: 498 GQADTVRELLSHV 510
           G    +  L   V
Sbjct: 170 GLEKVINVLEGQV 182

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score =  112 bits (283), Expect = 4e-29
 Identities = 38/193 (19%), Positives = 68/193 (35%), Gaps = 30/193 (15%)

Query: 64  NLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVVDLLI 123
           + T  +G        K G+  +         D        ETP   A+R    + +  L+
Sbjct: 8   SRTAGEGAMEYLIEWKDGHSPSWVPSSYIAAD---VVSEYETPWWTAARKADEQALSQLL 64

Query: 124 QFVQNISQEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGADVS 183
           +             V++V+E+G +AL +   +   +            V+LL EAGAD+ 
Sbjct: 65  EDR----------DVDAVDENGRTALLFVAGLGSDK-----------CVRLLAEAGADLD 103

Query: 184 LQTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIACNRGHME 243
            +  +   TA H  A     +V+  ++E   G +I      +   G T L +A       
Sbjct: 104 HRDMRGGLTALHMAAGYVRPEVVEALVEL--GADI----EVEDERGLTALELAREILKTT 157

Query: 244 LVNTMLNNHARVD 256
                +    R+ 
Sbjct: 158 PKGNPMQFGRRIG 170

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score =  107 bits (271), Expect = 2e-27
 Identities = 42/229 (18%), Positives = 68/229 (29%), Gaps = 50/229 (21%)

Query: 217 EISKAL-NKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYL 275
           E++K + ++    G    LI    GH           A V     E  +    AA     
Sbjct: 1   EVNKIIGSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAADV---VSEYETPWWTAARKADE 57

Query: 276 KVSSGKSLKHSVMSFRLPPHNIIPNGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCK 335
           +  S                       L+ D    +D +    +T L   A  G  +  +
Sbjct: 58  QALS----------------------QLLED--RDVDAVDENGRTALLFVAGLGSDKCVR 93

Query: 336 LLLDLGASIDATDDQ-GQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAM 394
           LL + GA +D  D + G   +H+AA    PEV +  +    + +    + G T   +A  
Sbjct: 94  LLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALV-ELGADIEVEDERGLTALELARE 152

Query: 395 QGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKA 443
                                        P+Q     G   V+ VL   
Sbjct: 153 ILKTTPKG--------------------NPMQFGRRIGLEKVINVLEGQ 181

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score =  100 bits (251), Expect = 1e-24
 Identities = 35/157 (22%), Positives = 54/157 (34%), Gaps = 19/157 (12%)

Query: 408 DRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHN 467
           + + +I +R     A    +  + GH+          A   D      T    AA+    
Sbjct: 1   EVNKIIGSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAA---DVVSEYETPWWTAARKADE 57

Query: 468 QVLEEMRSSKALNVYSK-KLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLG 526
           Q L ++      +V +  + G TAL   A  G    VR L              GA  L 
Sbjct: 58  QALSQL-LEDR-DVDAVDENGRTALLFVAGLGSDKCVRLLAEA-----------GAD-LD 103

Query: 527 ELGSESGMTPLHLAAYSGNENVVRLLLNSAGVQVDAQ 563
                 G+T LH+AA      VV  L+   G  ++ +
Sbjct: 104 HRDMRGGLTALHMAAGYVRPEVVEALV-ELGADIEVE 139

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 97.6 bits (244), Expect = 1e-23
 Identities = 35/185 (18%), Positives = 64/185 (34%), Gaps = 22/185 (11%)

Query: 380 ATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRV 439
            T  +G     I    G             +  + +       TP   AA       +  
Sbjct: 9   RTAGEGAMEYLIEWKDGHSPSWVPSS--YIAADVVSEYE----TPWWTAARKADEQALSQ 62

Query: 440 LVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKA-LNVYSKKLGVTALHVAAYFG 498
           L++        ++ G TA+   A  G ++ +  +  + A L+    + G+TALH+AA + 
Sbjct: 63  LLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYV 121

Query: 499 QADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVRLLLNSAGV 558
           + + V  L+             GA    E+  E G+T L LA            +   G 
Sbjct: 122 RPEVVEALVEL-----------GADI--EVEDERGLTALELAREILKTTPKGNPM-QFGR 167

Query: 559 QVDAQ 563
           ++  +
Sbjct: 168 RIGLE 172

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 96.4 bits (241), Expect = 2e-23
 Identities = 39/212 (18%), Positives = 63/212 (29%), Gaps = 46/212 (21%)

Query: 138 VNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGADVSLQTKQNHETAFHYC 197
            +    +GA       +                +        ADV       +ET +   
Sbjct: 7   GSRTAGEGAMEYLIEWK-----------DGHSPSWVPSSYIAADV----VSEYETPWWTA 51

Query: 198 AVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDV 257
           A   +   L+ +LE     ++    +     G T LL     G  + V  +    A +D 
Sbjct: 52  ARKADEQALSQLLE---DRDV----DAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDH 104

Query: 258 FDQE-GRSALHLAAEHGYLKVSSGKSLKHSVMSFRLPPHNIIPNGFLVHDHAAVIDILTL 316
            D   G +ALH+AA +   +V                         LV +  A I++   
Sbjct: 105 RDMRGGLTALHMAAGYVRPEVVE----------------------ALV-ELGADIEVEDE 141

Query: 317 RKQTPLHLAAEAGQLQVCKLLLDLGASIDATD 348
           R  T L LA E  +       +  G  I    
Sbjct: 142 RGLTALELAREILKTTPKGNPMQFGRRIGLEK 173

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 95.6 bits (239), Expect = 4e-23
 Identities = 36/180 (20%), Positives = 65/180 (36%), Gaps = 29/180 (16%)

Query: 12  TPLHIAARVKDGDRCALMLLKSGAGPNLTN-----IAARVKDGDRCALMLLKSGAGPNLT 66
               I  +        +      A            AAR    D  AL  L      +  
Sbjct: 16  MEYLIEWKDGHSP-SWVPSSYIAADVVSEYETPWWTAAR--KADEQALSQLLEDRDVDAV 72

Query: 67  TDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKN-KIGETPLHLASRNCKAEVVDLLIQF 125
            ++G+T +   A  G+   ++LL E G D  +++ + G T LH+A+   + EVV+ L++ 
Sbjct: 73  DENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVEL 132

Query: 126 VQNISQEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGADVSLQ 185
             +I            +E G +AL  A ++ K                  ++ G  + L+
Sbjct: 133 GADI---------EVEDERGLTALELAREILKTT-----------PKGNPMQFGRRIGLE 172

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 90.6 bits (226), Expect = 3e-21
 Identities = 33/175 (18%), Positives = 63/175 (36%), Gaps = 19/175 (10%)

Query: 341 GASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGV 400
                 T  +G     +  ++               +V     +  T    AA +     
Sbjct: 4   KIIGSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAADVV----SEYETPWWTAARKADEQA 59

Query: 401 IEELMKFDRSGV-ISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDEN----KTGF 455
           + +L++       + A +     T L   A  G    VR+L +AGA   D +    + G 
Sbjct: 60  LSQLLE----DRDVDAVDE-NGRTALLFVAGLGSDKCVRLLAEAGA---DLDHRDMRGGL 111

Query: 456 TAVHLAAQNGHNQVLEEMRSSKALNVYSK-KLGVTALHVAAYFGQADTVRELLSH 509
           TA+H+AA     +V+E +    A ++  + + G+TAL +A    +       +  
Sbjct: 112 TALHMAAGYVRPEVVEALVELGA-DIEVEDERGLTALELAREILKTTPKGNPMQF 165

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 83.7 bits (208), Expect = 7e-19
 Identities = 38/136 (27%), Positives = 55/136 (40%), Gaps = 12/136 (8%)

Query: 11  ETPLHIAARVKDGDRCALMLLKSGAGPNLTN--------IAARVKDGDRCALMLLKSGAG 62
           ETP   AAR    D  AL  L      +  +          A     D+C  +L ++GA 
Sbjct: 45  ETPWWTAAR--KADEQALSQLLEDRDVDAVDENGRTALLFVAG-LGSDKCVRLLAEAGAD 101

Query: 63  PNLT-TDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVVDL 121
            +      G T +H AA Y     ++ L+E G D   +++ G T L LA    K      
Sbjct: 102 LDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREILKTTPKGN 161

Query: 122 LIQFVQNISQEKVLEY 137
            +QF + I  EKV+  
Sbjct: 162 PMQFGRRIGLEKVINV 177

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score =  114 bits (286), Expect = 1e-28
 Identities = 46/299 (15%), Positives = 88/299 (29%), Gaps = 60/299 (20%)

Query: 70  GQTPVHAAAKYGNLVTL----QLLLEDGGD----PMYKNKIGETPLHLASRNCKA---EV 118
            +  +      G+   L      LL            +   G+T L  A  N  A   + 
Sbjct: 5   NRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDT 64

Query: 119 VDLLIQFVQN--ISQEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLL 176
           + +L+   +     +E +      V   G +ALH A +           +  +  V+LL+
Sbjct: 65  IPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIE-----------RRCKHYVELLV 113

Query: 177 EAGADVSLQTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIA 236
           E GADV  Q +                                         G  PL +A
Sbjct: 114 EKGADVHAQARGRFFQPKDE--------------------------GGYFYFGELPLSLA 147

Query: 237 CNRGHMELVNTMLNN---HARVDVFDQEGRSALHLAAEHGYLKVSSGKSLKHSVMSFRLP 293
                  +V+ +  N    A +   D  G + LH           + K +          
Sbjct: 148 ACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMY------ 201

Query: 294 PHNIIPNGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQ 352
              ++     +     +  +L     +PL +AA+ G++ + + ++    +  A      
Sbjct: 202 -DLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHIIRREIADAAAHHHHH 259

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 88.3 bits (219), Expect = 7e-20
 Identities = 40/266 (15%), Positives = 76/266 (28%), Gaps = 70/266 (26%)

Query: 319 QTPLHLAA---EAGQLQVCKLLLDLG-----------ASIDATDDQGQKPIHVAAQNNFP 364
           +T L  A     AG+     +LLD+            +       +GQ  +H+A +    
Sbjct: 47  KTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCK 106

Query: 365 EVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATP 424
              ++ +    + V A  +               G                        P
Sbjct: 107 HYVELLV-EKGADVHAQARGRFFQPKDEGGYFYFG----------------------ELP 143

Query: 425 LQLAAEGGHANVVRVLVKAGASCTD---ENKTGFTAVHLAAQNGHNQVLEEMRSSKALNV 481
           L LAA     ++V  L + G    D   ++  G T +H       N        ++    
Sbjct: 144 LSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIADN--------TRENTK 195

Query: 482 YSKKLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAA 541
           +  K+    L   A       +  LL++                       G++PL +AA
Sbjct: 196 FVTKMYDLLLIKCAKLFPDTNLEALLNN----------------------DGLSPLMMAA 233

Query: 542 YSGNENVVRLLLNSAGVQVDAQTQEN 567
            +G   + + ++        A    +
Sbjct: 234 KTGKIGIFQHIIRREIADAAAHHHHH 259

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 87.1 bits (216), Expect = 2e-19
 Identities = 47/273 (17%), Positives = 74/273 (27%), Gaps = 76/273 (27%)

Query: 11  ETPLHIAARVKDGDR--CALMLLKSGAGPNLTNIAARVKDGDRCALMLLKSGAGPNLTTD 68
           +T L  A       R     +LL         N+   +    R                 
Sbjct: 47  KTCLPKALLNLSAGRNDTIPILLD--IAEKTGNMREFINSPFRDV-------------YY 91

Query: 69  DGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNK--------------IGETPLHLASRNC 114
            GQT +H A +      ++LL+E G D   + +               GE PL LA+   
Sbjct: 92  RGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTN 151

Query: 115 KAEVVDLLIQFVQNISQEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKL 174
           +  +V  L               +   +  G + LH    V  A+     +K   K   L
Sbjct: 152 QPHIVHYL------TENGHKQADLRRQDSRGNTVLHAL--VAIADNTRENTKFVTKMYDL 203

Query: 175 LLEAGADVSLQTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLL 234
           LL   A +   T               NND                        G +PL+
Sbjct: 204 LLIKCAKLFPDTNLEALL---------NND------------------------GLSPLM 230

Query: 235 IACNRGHMELVNTMLNNHARVDVFDQEGRSALH 267
           +A   G + +   ++                 H
Sbjct: 231 MAAKTGKIGIFQHIIRREIADA----AAHHHHH 259

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 85.2 bits (211), Expect = 9e-19
 Identities = 39/266 (14%), Positives = 73/266 (27%), Gaps = 55/266 (20%)

Query: 231 TPLLIACNRG----HMELVNTMLNNHARVDVFDQE----GRSALHLAAEHGYLKVSSGKS 282
             L    +RG       L++ +L +  R+   +      G++ L  A  +     +    
Sbjct: 7   PILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIP 66

Query: 283 LKHSVMSFRLPPHNIIPNGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGA 342
           +   +                ++     +     R QT LH+A E       +LL++ GA
Sbjct: 67  ILLDIA------EKTGNMREFINSPFRDVYY---RGQTALHIAIERRCKHYVELLVEKGA 117

Query: 343 SIDATDDQ--------------GQKPIHVAAQNNFPEVAQIFLRAHPSL---VTATTKDG 385
            + A                  G+ P+ +AA  N P +       +      +      G
Sbjct: 118 DVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLT-ENGHKQADLRRQDSRG 176

Query: 386 NTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGA 445
           NT  H                          +   E T                L     
Sbjct: 177 NTVLHALVAIA--------------------DNTRENTKFVTKMYDLLLIKCAKLFPDTN 216

Query: 446 SCTDENKTGFTAVHLAAQNGHNQVLE 471
                N  G + + +AA+ G   + +
Sbjct: 217 LEALLNNDGLSPLMMAAKTGKIGIFQ 242

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 78.3 bits (193), Expect = 2e-16
 Identities = 35/193 (18%), Positives = 63/193 (32%), Gaps = 39/193 (20%)

Query: 11  ETPLHIAARVKDGDRCALMLLKSGAGPNLTNIAARVKDGDRCALMLLKSGAGPNLTTDDG 70
           +T LHIA   +       +L++ GA     ++ A+ +                      G
Sbjct: 94  QTALHIAIERRCKH-YVELLVEKGA-----DVHAQARGRFFQ-------PKDEGGYFYFG 140

Query: 71  QTPVHAAAKYGNLVTLQLLLEDGG---DPMYKNKIGETPLHLASRNCK---------AEV 118
           + P+  AA       +  L E+G    D   ++  G T LH                 ++
Sbjct: 141 ELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKM 200

Query: 119 VDLLIQFVQNISQEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEA 178
            DLL+     +  +  LE +  +N DG S L  A +  K               + ++  
Sbjct: 201 YDLLLIKCAKLFPDTNLEAL--LNNDGLSPLMMAAKTGKIG-----------IFQHIIRR 247

Query: 179 GA-DVSLQTKQNH 190
              D +     +H
Sbjct: 248 EIADAAAHHHHHH 260

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score =  109 bits (275), Expect = 2e-28
 Identities = 48/154 (31%), Positives = 73/154 (47%), Gaps = 7/154 (4%)

Query: 319 QTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLV 378
              L  AA AGQ    ++L+  GA     D  G  P+H+AAQ       ++ LR      
Sbjct: 3   GKKLLEAARAGQDDEVRILMANGAPFTT-DWLGTSPLHLAAQYGHFSTTEVLLR-AGVSR 60

Query: 379 TATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGV-ISARNRVTEATPLQLAAEGGHANVV 437
            A TK   T  H+AA +G   ++E L+K    G  ++A++   + T L  A E  H  VV
Sbjct: 61  DARTKVDRTPLHMAASEGHANIVEVLLK---HGADVNAKDM-LKMTALHWATEHNHQEVV 116

Query: 438 RVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLE 471
            +L+K GA    ++K   TA  ++  NG+  + E
Sbjct: 117 ELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAE 150

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score =  108 bits (273), Expect = 5e-28
 Identities = 46/171 (26%), Positives = 72/171 (42%), Gaps = 21/171 (12%)

Query: 384 DGNTCAHIAAMQGSVGVIEELMKFDRSGV-ISARNRVTEATPLQLAAEGGHANVVRVLVK 442
           D       AA  G    +  LM    +G   +        +PL LAA+ GH +   VL++
Sbjct: 1   DLGKKLLEAARAGQDDEVRILMA---NGAPFTTDWL--GTSPLHLAAQYGHFSTTEVLLR 55

Query: 443 AGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSK-KLGVTALHVAAYFGQAD 501
           AG S     K   T +H+AA  GH  ++E +    A +V +K  L +TALH A      +
Sbjct: 56  AGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGA-DVNAKDMLKMTALHWATEHNHQE 114

Query: 502 TVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVRLL 552
            V  L+ +           GA       S+   T   ++  +GNE++  +L
Sbjct: 115 VVELLIKY-----------GADV--HTQSKFCKTAFDISIDNGNEDLAEIL 152

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score =  106 bits (267), Expect = 3e-27
 Identities = 35/209 (16%), Positives = 72/209 (34%), Gaps = 61/209 (29%)

Query: 69  DGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVVDLLIQFVQN 128
           D    +  AA+ G    +++L+ +G      + +G +PLHLA++       ++L++   +
Sbjct: 1   DLGKKLLEAARAGQDDEVRILMANGAP-FTTDWLGTSPLHLAAQYGHFSTTEVLLRAGVS 59

Query: 129 ISQEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGADVSLQTKQ 188
                     ++  +   + LH A     A             V++LL+ GADV      
Sbjct: 60  R---------DARTKVDRTPLHMAASEGHAN-----------IVEVLLKHGADV------ 93

Query: 189 NHETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIACNRGHMELVNTM 248
                                             N +  +  T L  A    H E+V  +
Sbjct: 94  ----------------------------------NAKDMLKMTALHWATEHNHQEVVELL 119

Query: 249 LNNHARVDVFDQEGRSALHLAAEHGYLKV 277
           +   A V    +  ++A  ++ ++G   +
Sbjct: 120 IKYGADVHTQSKFCKTAFDISIDNGNEDL 148

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score =  104 bits (261), Expect = 2e-26
 Identities = 45/176 (25%), Positives = 70/176 (39%), Gaps = 25/176 (14%)

Query: 229 GWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVSSGKSLKHSVM 288
               LL A   G  + V  ++ N A     D  G S LHLAA++G+   +          
Sbjct: 2   LGKKLLEAARAGQDDEVRILMANGAPFTT-DWLGTSPLHLAAQYGHFSTTE--------- 51

Query: 289 SFRLPPHNIIPNGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATD 348
                         L+       D  T   +TPLH+AA  G   + ++LL  GA ++A D
Sbjct: 52  -------------VLL-RAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKD 97

Query: 349 DQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIEEL 404
                 +H A ++N  EV +  L  + + V   +K   T   I+   G+  + E L
Sbjct: 98  MLKMTALHWATEHNHQEVVE-LLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL 152

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 95.1 bits (238), Expect = 3e-23
 Identities = 44/144 (30%), Positives = 60/144 (41%), Gaps = 21/144 (14%)

Query: 423 TPLQLAAEGGHANVVRVLVKAGASCTDENKT--GFTAVHLAAQNGHNQVLEEMRSSKALN 480
             L  AA  G  + VR+L+  GA          G + +HLAAQ GH    E +  +   +
Sbjct: 4   KKLLEAARAGQDDEVRILMANGA---PFTTDWLGTSPLHLAAQYGHFSTTEVLLRAGV-S 59

Query: 481 VYSK-KLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHL 539
             ++ K+  T LH+AA  G A+ V  LL H           GA           MT LH 
Sbjct: 60  RDARTKVDRTPLHMAASEGHANIVEVLLKH-----------GADV--NAKDMLKMTALHW 106

Query: 540 AAYSGNENVVRLLLNSAGVQVDAQ 563
           A    ++ VV LL+   G  V  Q
Sbjct: 107 ATEHNHQEVVELLI-KYGADVHTQ 129

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 89.4 bits (223), Expect = 3e-21
 Identities = 36/158 (22%), Positives = 64/158 (40%), Gaps = 32/158 (20%)

Query: 11  ETPLHIAARVKDGDRCALMLLKSGAGPNLTNIAARVKDGDRC-ALM-------------L 56
              L  AAR    D   + L+ +GA            D      L              L
Sbjct: 3   GKKLLEAARAGQDDEVRI-LMANGA-----PFT---TDWLGTSPLHLAAQYGHFSTTEVL 53

Query: 57  LKSGAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKA 116
           L++G   +  T   +TP+H AA  G+   +++LL+ G D   K+ +  T LH A+ +   
Sbjct: 54  LRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQ 113

Query: 117 EVVDLLIQFVQNISQEKVLEYVNSVNEDGASALHYACQ 154
           EVV+LLI++  ++         ++ ++   +A   +  
Sbjct: 114 EVVELLIKYGADV---------HTQSKFCKTAFDISID 142

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 86.7 bits (216), Expect = 2e-20
 Identities = 40/235 (17%), Positives = 72/235 (30%), Gaps = 84/235 (35%)

Query: 103 GETPLHLASRNCKAEVVDLLIQFVQNISQEKVLEYVNSVNEDGASALHYACQVTKAELIP 162
               L  A+R  + + V +L+      +           +  G S LH A Q        
Sbjct: 2   LGKKLLEAARAGQDDEVRILMANGAPFTT----------DWLGTSPLHLAAQ-------- 43

Query: 163 ITSKEDQKTVKLLLEAGADVSLQTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKAL 222
                   T ++LL AG                                           
Sbjct: 44  YGHFS---TTEVLLRAGVSR---------------------------------------- 60

Query: 223 NKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVSSGKS 282
           + +T +  TPL +A + GH  +V  +L + A V+  D    +ALH A EH + +V     
Sbjct: 61  DARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVE--- 117

Query: 283 LKHSVMSFRLPPHNIIPNGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLL 337
                               L+  + A +   +   +T   ++ + G   + ++L
Sbjct: 118 -------------------LLI-KYGADVHTQSKFCKTAFDISIDNGNEDLAEIL 152

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 80.1 bits (199), Expect = 5e-18
 Identities = 31/137 (22%), Positives = 57/137 (41%), Gaps = 32/137 (23%)

Query: 5   NSGKLRETPLHIAAR------VKDGDRCALMLLKSGAGPNLTNIAARVKDGDRCALM--- 55
            +  L  +PLH+AA+       +       +LL++G      +  AR K   R  L    
Sbjct: 29  TTDWLGTSPLHLAAQYGHFSTTE-------VLLRAGV-----SRDARTKVD-RTPLHMAA 75

Query: 56  ----------LLKSGAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGET 105
                     LLK GA  N       T +H A ++ +   ++LL++ G D   ++K  +T
Sbjct: 76  SEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKT 135

Query: 106 PLHLASRNCKAEVVDLL 122
              ++  N   ++ ++L
Sbjct: 136 AFDISIDNGNEDLAEIL 152

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 70.1 bits (173), Expect = 2e-14
 Identities = 30/110 (27%), Positives = 50/110 (45%), Gaps = 15/110 (13%)

Query: 454 GFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLGVTALHVAAYFGQADTVRELLSHVPGT 513
               +  AA+ G +  +  + ++ A    +  LG + LH+AA +G   T   LL      
Sbjct: 2   LGKKLLEAARAGQDDEVRILMANGA-PFTTDWLGTSPLHLAAQYGHFSTTEVLLRA---- 56

Query: 514 VKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVRLLLNSAGVQVDAQ 563
                  G S   +  ++   TPLH+AA  G+ N+V +LL   G  V+A+
Sbjct: 57  -------GVSR--DARTKVDRTPLHMAASEGHANIVEVLL-KHGADVNAK 96

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score =  109 bits (275), Expect = 3e-28
 Identities = 39/179 (21%), Positives = 68/179 (37%), Gaps = 27/179 (15%)

Query: 229 GWTPLLIACNRGHMELVNTMLNNH-ARVDVFDQEGRSALHLAAEHGYLKVSSGKSLKHSV 287
               L  A  RG ++ V  +L+      D  ++ G++AL +    G   ++         
Sbjct: 2   AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMM-FGSTAIAL-------- 52

Query: 288 MSFRLPPHNIIPNGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDAT 347
                          L+    A  ++      +P+H AA  G L   K+L++ GA ++  
Sbjct: 53  --------------ELL-KQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVP 97

Query: 348 DDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIEELMK 406
           D  G  PIH+A Q     V   FL A    +      G T   +A  +G+  +++ L  
Sbjct: 98  DGTGALPIHLAVQEGHTAVVS-FLAAESD-LHRRDARGLTPLELALQRGAQDLVDILQG 154

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score =  109 bits (275), Expect = 3e-28
 Identities = 42/193 (21%), Positives = 71/193 (36%), Gaps = 42/193 (21%)

Query: 320 TPLHLAAEAGQLQ-VCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLV 378
             L  AA  G +Q V +LL       DA +  G+  + V    +   +A   L    +  
Sbjct: 4   DRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGS-TAIAL-ELLKQGASP 61

Query: 379 TATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVR 438
                 G                                     +P+  AA  G  + ++
Sbjct: 62  NVQDTSGT------------------------------------SPVHDAARTGFLDTLK 85

Query: 439 VLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSK-KLGVTALHVAAYF 497
           VLV+ GA     + TG   +HLA Q GH  V+  + ++++ +++ +   G+T L +A   
Sbjct: 86  VLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFL-AAES-DLHRRDARGLTPLELALQR 143

Query: 498 GQADTVRELLSHV 510
           G  D V  L  H+
Sbjct: 144 GAQDLVDILQGHM 156

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score =  107 bits (269), Expect = 2e-27
 Identities = 38/209 (18%), Positives = 66/209 (31%), Gaps = 63/209 (30%)

Query: 70  GQTPVHAAAKYGNL-VTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVVDLLIQFVQN 128
               +  AA  G++    +LL  +   P   N+ G+T L +        +   L++   +
Sbjct: 2   AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGST-AIALELLKQGAS 60

Query: 129 ISQEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGADVSLQTKQ 188
                     N  +  G S +H A +    +           T+K+L+E GADV      
Sbjct: 61  P---------NVQDTSGTSPVHDAARTGFLD-----------TLKVLVEHGADV------ 94

Query: 189 NHETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIACNRGHMELVNTM 248
                                             N     G  P+ +A   GH  +V+  
Sbjct: 95  ----------------------------------NVPDGTGALPIHLAVQEGHTAVVS-F 119

Query: 249 LNNHARVDVFDQEGRSALHLAAEHGYLKV 277
           L   + +   D  G + L LA + G   +
Sbjct: 120 LAAESDLHRRDARGLTPLELALQRGAQDL 148

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score =  106 bits (268), Expect = 3e-27
 Identities = 45/172 (26%), Positives = 67/172 (38%), Gaps = 21/172 (12%)

Query: 385 GNTCAHIAAMQGSVGVIEELMKFDRSGV-ISARNRVTEATPLQLAAEGGHANVVRVLVKA 443
                  AA +G V  +  L+   R  V   A NR    T LQ+   G    +   L+K 
Sbjct: 2   AGDRLSGAAARGDVQEVRRLL--HRELVHPDALNR-FGKTALQVMMFG-STAIALELLKQ 57

Query: 444 GASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSK-KLGVTALHVAAYFGQADT 502
           GAS   ++ +G + VH AA+ G    L+ +    A +V      G   +H+A   G    
Sbjct: 58  GASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGA-DVNVPDGTGALPIHLAVQEGHTAV 116

Query: 503 VRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVRLLLN 554
           V  L +       SD               G+TPL LA   G +++V +L  
Sbjct: 117 VSFLAAE------SDL--------HRRDARGLTPLELALQRGAQDLVDILQG 154

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 99.0 bits (248), Expect = 1e-24
 Identities = 45/174 (25%), Positives = 64/174 (36%), Gaps = 31/174 (17%)

Query: 12  TPLHIAARVKDGDRCALMLLKSGAGPNLTN--------IAARVKDGDRCALMLLKSGAGP 63
             L  AA   D      +L +    P+  N        +          AL LLK GA P
Sbjct: 4   DRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMF--GSTAIALELLKQGASP 61

Query: 64  NLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVVDLLI 123
           N+    G +PVH AA+ G L TL++L+E G D    +  G  P+HLA +     VV  L 
Sbjct: 62  NVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLA 121

Query: 124 QFVQNISQEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLE 177
                         ++  +  G + L  A Q           +  Q  V +L  
Sbjct: 122 AESD----------LHRRDARGLTPLELALQ-----------RGAQDLVDILQG 154

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 98.3 bits (246), Expect = 2e-24
 Identities = 40/210 (19%), Positives = 62/210 (29%), Gaps = 61/210 (29%)

Query: 262 GRSALHLAAEHGYLKVSSGKSLKHSVMSFRLPPHNIIPNGFLVHDHAAVIDILTLRKQTP 321
               L  AA  G ++                          L+H      D L    +T 
Sbjct: 2   AGDRLSGAAARGDVQEVR----------------------RLLHRELVHPDALNRFGKTA 39

Query: 322 LHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTAT 381
           L +    G   +   LL  GAS +  D  G  P+H AA+  F +  ++ +  H + V   
Sbjct: 40  LQVMMF-GSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLV-EHGADVNVP 97

Query: 382 TKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLV 441
              G                                      P+ LA + GH  VV  L 
Sbjct: 98  DGTGA------------------------------------LPIHLAVQEGHTAVVSFLA 121

Query: 442 KAGASCTDENKTGFTAVHLAAQNGHNQVLE 471
              +     +  G T + LA Q G   +++
Sbjct: 122 A-ESDLHRRDARGLTPLELALQRGAQDLVD 150

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 97.9 bits (245), Expect = 4e-24
 Identities = 31/172 (18%), Positives = 59/172 (34%), Gaps = 23/172 (13%)

Query: 42  IAARVKDGDRCALMLLKSGAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNK 101
            AA   D      +L +    P+     G+T +     +G+      LL+ G  P  ++ 
Sbjct: 8   GAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMM-FGSTAIALELLKQGASPNVQDT 66

Query: 102 IGETPLHLASRNCKAEVVDLLIQFVQNISQEKVLEYVNSVNEDGASALHYACQVTKAELI 161
            G +P+H A+R    + + +L++   ++         N  +  GA  +H A Q       
Sbjct: 67  SGTSPVHDAARTGFLDTLKVLVEHGADV---------NVPDGTGALPIHLAVQEGHTA-- 115

Query: 162 PITSKEDQKTVKLLLEAGADVSLQTKQNHETAFHYCAVAGNNDVLTGMLEQM 213
                     V  L    +D+  +      T        G  D++  +   M
Sbjct: 116 ---------VVSFLAA-ESDLHRRDA-RGLTPLELALQRGAQDLVDILQGHM 156

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 90.9 bits (227), Expect = 8e-22
 Identities = 40/237 (16%), Positives = 68/237 (28%), Gaps = 84/237 (35%)

Query: 103 GETPLHLASRNCKAEVVDLLIQFVQNISQEKVLEYVNSVNEDGASALHYACQVTKAELIP 162
               L  A+     + V  L+         + L + +++N  G +AL             
Sbjct: 2   AGDRLSGAAARGDVQEVRRLL--------HRELVHPDALNRFGKTALQVM---------- 43

Query: 163 ITSKEDQKTVKLLLEAGADVSLQTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKAL 222
                       LL+ GA                                          
Sbjct: 44  --MFGSTAIALELLKQGASP---------------------------------------- 61

Query: 223 NKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVSSGKS 282
           N Q + G +P+  A   G ++ +  ++ + A V+V D  G   +HLA + G+  V S   
Sbjct: 62  NVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVS--- 118

Query: 283 LKHSVMSFRLPPHNIIPNGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLD 339
                              FL    +  +     R  TPL LA + G   +  +L  
Sbjct: 119 -------------------FLAA-ESD-LHRRDARGLTPLELALQRGAQDLVDILQG 154

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 87.9 bits (219), Expect = 1e-20
 Identities = 34/138 (24%), Positives = 54/138 (39%), Gaps = 17/138 (12%)

Query: 423 TPLQLAAEGGHANVVRVLV-KAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNV 481
             L  AA  G    VR L+ +        N+ G TA+ +    G   +  E+    A + 
Sbjct: 4   DRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMM-FGSTAIALELLKQGA-SP 61

Query: 482 YSK-KLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLA 540
             +   G + +H AA  G  DT++ L+ H           GA     +   +G  P+HLA
Sbjct: 62  NVQDTSGTSPVHDAARTGFLDTLKVLVEH-----------GADV--NVPDGTGALPIHLA 108

Query: 541 AYSGNENVVRLLLNSAGV 558
              G+  VV  L   + +
Sbjct: 109 VQEGHTAVVSFLAAESDL 126

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 71.3 bits (176), Expect = 8e-15
 Identities = 26/113 (23%), Positives = 42/113 (37%), Gaps = 28/113 (24%)

Query: 11  ETPLHIAARVKDGDRCALMLLKSGAGPNLTNIAARVKDGDRCALMLLKSGAGPNLTTDDG 70
            +P+H AAR    D                              +L++ GA  N+    G
Sbjct: 69  TSPVHDAARTGFLD---------------------------TLKVLVEHGADVNVPDGTG 101

Query: 71  QTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVVDLLI 123
             P+H A + G+   +  L     D   ++  G TPL LA +    ++VD+L 
Sbjct: 102 ALPIHLAVQEGHTAVVSFLAA-ESDLHRRDARGLTPLELALQRGAQDLVDILQ 153

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 40.9 bits (97), Expect = 2e-04
 Identities = 11/31 (35%), Positives = 13/31 (41%)

Query: 533 GMTPLHLAAYSGNENVVRLLLNSAGVQVDAQ 563
               L  AA  G+   VR LL+   V  DA 
Sbjct: 2   AGDRLSGAAARGDVQEVRRLLHRELVHPDAL 32

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score =  113 bits (283), Expect = 2e-27
 Identities = 44/277 (15%), Positives = 75/277 (27%), Gaps = 46/277 (16%)

Query: 316 LRKQTPLHLAAEAGQ---LQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLR 372
           ++ +    +AA  G    L    LLL     +     +  +   +AA+N    V      
Sbjct: 90  IKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCE 149

Query: 373 AHPSLVTAT-TKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEG 431
             P+ + A    +      +AA  G + V+  L +   +   +             A   
Sbjct: 150 LAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGR 209

Query: 432 GHANVVRVLVKAGA----------------------SCTDENKTGFTAVHLAAQNGHNQV 469
           GH NV+  L+                             +  K    A  L+  +G   +
Sbjct: 210 GHHNVINFLLDCPVMLAYAEIHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDL 269

Query: 470 LEEMRSSKALNVYSKKLGVTALHVAAYFGQ---ADTVRELLSHVPGTVKSDPPTGASFLG 526
           + +              G   L            D +R LLS       +          
Sbjct: 270 VTKSEC---------LQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPT-------- 312

Query: 527 ELGSESGMTPLHLAAYSGNENVVRLLLNSAGVQVDAQ 563
                     L LA   GN+    LLL+   V    +
Sbjct: 313 ATIPGDANELLRLALRLGNQGACALLLSIPSVLALTK 349

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score =  108 bits (271), Expect = 7e-26
 Identities = 49/353 (13%), Positives = 91/353 (25%), Gaps = 77/353 (21%)

Query: 217 EISKALNKQTSIGWTPLLIAC---NRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHG 273
           ++    +K+         +A        ++ +  +L +   V V   E   A  LAAE+G
Sbjct: 80  QLWSDAHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENG 139

Query: 274 YLKVSSGKSLKHSVMSFRLPPHNIIPNGFLVHDHAAVIDILTLRK-QTPLHLAAEAGQLQ 332
           +L V     L                   L       I  +   +      LAAE G L 
Sbjct: 140 HLHV-----LN-----------------RLCELAPTEIMAMIQAENYHAFRLAAENGHLH 177

Query: 333 VCKLLLDLGASIDATDDQGQK---PIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCA 389
           V   L +L  +      Q +        A       V   FL   P ++           
Sbjct: 178 VLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVIN-FLLDCPVMLAYAEIHEFEYG 236

Query: 390 HIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTD 449
                      +  L +                   +L+   G  ++V            
Sbjct: 237 EKYVNPFIARHVNRLKEMH--------------DAFKLSNPDGVFDLVT---------KS 273

Query: 450 ENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSK--------KLGVTALHVAAYFGQAD 501
           E   GF  +    +     +L+++R   ++                   L +A   G   
Sbjct: 274 ECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQG 333

Query: 502 TVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVRLLLN 554
               LLS                   + + +     ++    G  ++  + L 
Sbjct: 334 ACALLLSI----------------PSVLALTKANNYYINETGGRLDLRAVALE 370

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score =  105 bits (262), Expect = 1e-24
 Identities = 49/348 (14%), Positives = 91/348 (26%), Gaps = 57/348 (16%)

Query: 42  IAARVKDGDRCALMLLKSGAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNK 101
           +       +R A  L        + ++              L TL LLL           
Sbjct: 67  LCLYYAHYNRNAKQLWSDAHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQA 126

Query: 102 IGETPLHLASRNCKAEVVDLLIQFVQNISQEKVLEYVNSVNEDGASALHYACQVTKAELI 161
                  LA+ N    V++ L +                +  +   A   A +       
Sbjct: 127 ENYQAFRLAAENGHLHVLNRLCELAPTEIMAM-------IQAENYHAFRLAAE------- 172

Query: 162 PITSKEDQKTVKLLLEAGADVSLQTKQNH-ETAFHYCAVA-GNNDVLTGMLEQMSGTEIS 219
                     +  L E     +    Q     AF + AV  G+++V+  +L+      ++
Sbjct: 173 ----NGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDC--PVMLA 226

Query: 220 KALNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVSS 279
            A                  G   +   +  +  R+    +E   A  L+   G   + +
Sbjct: 227 YAEIH-----------EFEYGEKYVNPFIARHVNRL----KEMHDAFKLSNPDGVFDLVT 271

Query: 280 GKSLKHSVMSFRLPPHNIIPNGFLVH-------------DHAAVIDILTLRKQTPLHLAA 326
               K   +       N+I     V                 A    +       L LA 
Sbjct: 272 ----KSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLAL 327

Query: 327 EAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAH 374
             G    C LLL + + +  T        ++       ++  + L  H
Sbjct: 328 RLGNQGACALLLSIPSVLALTK---ANNYYINETGGRLDLRAVALEHH 372

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 67.7 bits (165), Expect = 2e-12
 Identities = 24/144 (16%), Positives = 43/144 (29%), Gaps = 16/144 (11%)

Query: 427 LAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMR---SSKALNVYS 483
           L     H N     + + A    +         +AA  G +  L+ +    +S  +    
Sbjct: 67  LCLYYAHYNRNAKQLWSDA--HKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVI 124

Query: 484 KKLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYS 543
           +     A  +AA  G    +  L    P  + +                      LAA +
Sbjct: 125 QAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMI-----------QAENYHAFRLAAEN 173

Query: 544 GNENVVRLLLNSAGVQVDAQTQEN 567
           G+ +V+  L   A  +  A  Q  
Sbjct: 174 GHLHVLNRLCELAPTEATAMIQAE 197

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 65.0 bits (158), Expect = 2e-11
 Identities = 35/271 (12%), Positives = 65/271 (23%), Gaps = 50/271 (18%)

Query: 11  ETPLHIAAR------VKDGDRCALMLLKSGAGPNLTNIAARVKDGDRCALM--------- 55
                +AA       +         L +      +  I A     +  A           
Sbjct: 129 YQAFRLAAENGHLHVLN-------RLCELAPTEIMAMIQA----ENYHAFRLAAENGHLH 177

Query: 56  ----LLKSGA---GPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLH 108
               L +         +  ++      AA   G+   +  LL+      Y          
Sbjct: 178 VLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGE 237

Query: 109 LASRNCKAEVVDLLIQF---VQNISQEKVLEYVN-SVNEDGASALHYACQVTKAELIPIT 164
                  A  V+ L +     +  + + V + V  S    G   L    +     L+   
Sbjct: 238 KYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDI 297

Query: 165 SKEDQKTVKLLLEAGADVSLQTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNK 224
                      ++A A  +      +          GN      +L   S   ++KA   
Sbjct: 298 RFLLSIPG---IKALAPTATIPGDAN-ELLRLALRLGNQGACALLLSIPSVLALTKA--- 350

Query: 225 QTSIGWTPLLIACNRGHMELVNTMLNNHARV 255
                     I    G ++L    L +H   
Sbjct: 351 ------NNYYINETGGRLDLRAVALEHHHHH 375

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 47.6 bits (113), Expect = 6e-06
 Identities = 13/124 (10%), Positives = 33/124 (26%), Gaps = 22/124 (17%)

Query: 1   MLQQNSGKLRETPLHIAARVKDGDRCALMLLKSGAGPNLTNIAARVKDGDRCALMLLKSG 60
           ++ ++        L    R    D   L  ++                    ++  +K+ 
Sbjct: 269 LVTKSECLQGFYMLRNLIR--RNDEVLLDDIRF-----------------LLSIPGIKAL 309

Query: 61  AGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVVD 120
           A       D    +  A + GN     LLL                 ++     + ++  
Sbjct: 310 APTATIPGDANELLRLALRLGNQGACALLLSIPSV---LALTKANNYYINETGGRLDLRA 366

Query: 121 LLIQ 124
           + ++
Sbjct: 367 VALE 370

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score =  104 bits (263), Expect = 1e-26
 Identities = 42/219 (19%), Positives = 72/219 (32%), Gaps = 65/219 (29%)

Query: 60  GAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGG-DPMYKNKIGETPLHLASRNCKAEV 118
           GA  N    +    +  AAK G++ T++ L      +         TPLH A+   +  V
Sbjct: 1   GAMGN---SEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSV 57

Query: 119 VDLLIQFVQNISQEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEA 178
           V+ L+Q   ++         ++ ++ G   LH AC     E             +LL++ 
Sbjct: 58  VEYLLQHGADV---------HAKDKGGLVPLHNACSYGHYE-----------VAELLVKH 97

Query: 179 GADVSLQTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIACN 238
           GA V                                        N      +TPL  A  
Sbjct: 98  GAVV----------------------------------------NVADLWKFTPLHEAAA 117

Query: 239 RGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKV 277
           +G  E+   +L + A     +++G + L L    G   +
Sbjct: 118 KGKYEICKLLLQHGADPTKKNRDGNTPLDLVK-DGDTDI 155

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score =  103 bits (259), Expect = 5e-26
 Identities = 44/193 (22%), Positives = 64/193 (33%), Gaps = 41/193 (21%)

Query: 319 QTPLHLAAEAGQLQVCKLLLDL-GASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSL 377
              L  AA+AG ++  K L  +   +    + +   P+H AA  N   V +  L  H + 
Sbjct: 9   DRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLL-QHGAD 67

Query: 378 VTATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVV 437
           V A  K G                                      PL  A   GH  V 
Sbjct: 68  VHAKDKGGLV------------------------------------PLHNACSYGHYEVA 91

Query: 438 RVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSK-KLGVTALHVAAY 496
            +LVK GA     +   FT +H AA  G  ++ + +    A +   K + G T L +   
Sbjct: 92  ELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGA-DPTKKNRDGNTPLDLVKD 150

Query: 497 FGQADTVRELLSH 509
            G  D    L   
Sbjct: 151 -GDTDIQDLLRGD 162

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score =  102 bits (256), Expect = 2e-25
 Identities = 45/188 (23%), Positives = 73/188 (38%), Gaps = 29/188 (15%)

Query: 259 DQEGRSALHLAAEHGYLKVSSGKSLKHSVMSFRLPPHNIIPNGFLVHDHAAVIDILTLRK 318
           + E    L  AA+ G ++                          L    +     +  R+
Sbjct: 5   NSEADRQLLEAAKAGDVETVK----------------------KLCTVQSVNCRDIEGRQ 42

Query: 319 QTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLV 378
            TPLH AA   ++ V + LL  GA + A D  G  P+H A      EVA++ +  H ++V
Sbjct: 43  STPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLV-KHGAVV 101

Query: 379 TATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGV-ISARNRVTEATPLQLAAEGGHANVV 437
                   T  H AA +G   + + L++    G   + +NR    TPL L  + G  ++ 
Sbjct: 102 NVADLWKFTPLHEAAAKGKYEICKLLLQ---HGADPTKKNR-DGNTPLDLVKD-GDTDIQ 156

Query: 438 RVLVKAGA 445
            +L    A
Sbjct: 157 DLLRGDAA 164

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score =  100 bits (251), Expect = 8e-25
 Identities = 45/174 (25%), Positives = 67/174 (38%), Gaps = 20/174 (11%)

Query: 383 KDGNTCAHIAAMQGSVGVIEELMKFDRSGV-ISARNRVTEATPLQLAAEGGHANVVRVLV 441
            + +     AA  G V  +++L       V         ++TPL  AA     +VV  L+
Sbjct: 6   SEADRQLLEAAKAGDVETVKKLC--TVQSVNCRDIEG-RQSTPLHFAAGYNRVSVVEYLL 62

Query: 442 KAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSK-KLGVTALHVAAYFGQA 500
           + GA    ++K G   +H A   GH +V E +    A  V        T LH AA  G+ 
Sbjct: 63  QHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGA-VVNVADLWKFTPLHEAAAKGKY 121

Query: 501 DTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVRLLLN 554
           +  + LL H           GA       +  G TPL L    G+ ++  LL  
Sbjct: 122 EICKLLLQH-----------GADP--TKKNRDGNTPLDLVKD-GDTDIQDLLRG 161

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 94.0 bits (235), Expect = 1e-22
 Identities = 38/184 (20%), Positives = 57/184 (30%), Gaps = 42/184 (22%)

Query: 11  ETPLHIAARVKDGDRCALMLLKSGAGPNLTNIAARVKDGDRC-ALM-------------L 56
           +  L  AA+  D +    +           N      +G +   L              L
Sbjct: 9   DRQLLEAAKAGDVETVKKLCTVQSV-----NCRD--IEGRQSTPLHFAAGYNRVSVVEYL 61

Query: 57  LKSGAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKA 116
           L+ GA  +     G  P+H A  YG+    +LL++ G      +    TPLH A+   K 
Sbjct: 62  LQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKY 121

Query: 117 EVVDLLIQFVQNISQEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLL 176
           E+  LL+Q   +             N DG + L                  D     LL 
Sbjct: 122 EICKLLLQHGADP---------TKKNRDGNTPLDLV------------KDGDTDIQDLLR 160

Query: 177 EAGA 180
              A
Sbjct: 161 GDAA 164

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 92.1 bits (230), Expect = 5e-22
 Identities = 46/244 (18%), Positives = 72/244 (29%), Gaps = 83/244 (34%)

Query: 99  KNKIGETPLHLASRNCKAEVVDLLIQFVQNISQEKVLEYVNSVNEDGASALHYACQVTKA 158
            N   +  L  A++    E V  L   VQ+++          +    ++ LH+A      
Sbjct: 4   GNSEADRQLLEAAKAGDVETVKKLCT-VQSVN-------CRDIEGRQSTPLHFAAG---- 51

Query: 159 ELIPITSKEDQKTVKLLLEAGADVSLQTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEI 218
                        V+ LL+ GADV                                    
Sbjct: 52  ----YNRVS---VVEYLLQHGADV------------------------------------ 68

Query: 219 SKALNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVS 278
               + +   G  PL  AC+ GH E+   ++ + A V+V D    + LH AA  G  ++ 
Sbjct: 69  ----HAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEIC 124

Query: 279 SGKSLKHSVMSFRLPPHNIIPNGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLL 338
                                   L+  H A          TPL L  + G   +  LL 
Sbjct: 125 K----------------------LLL-QHGADPTKKNRDGNTPLDLVKD-GDTDIQDLLR 160

Query: 339 DLGA 342
              A
Sbjct: 161 GDAA 164

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 92.1 bits (230), Expect = 5e-22
 Identities = 38/144 (26%), Positives = 55/144 (38%), Gaps = 17/144 (11%)

Query: 423 TPLQLAAEGGHANVVRVLVKA-GASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNV 481
             L  AA+ G    V+ L      +C D      T +H AA      V+E +    A +V
Sbjct: 10  RQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGA-DV 68

Query: 482 YSK-KLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLA 540
           ++K K G+  LH A  +G  +    L+ H           GA     +      TPLH A
Sbjct: 69  HAKDKGGLVPLHNACSYGHYEVAELLVKH-----------GAVV--NVADLWKFTPLHEA 115

Query: 541 AYSGNENVVRLLLNSAGVQVDAQT 564
           A  G   + +LLL   G     + 
Sbjct: 116 AAKGKYEICKLLL-QHGADPTKKN 138

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 77.0 bits (191), Expect = 7e-17
 Identities = 29/122 (23%), Positives = 47/122 (38%), Gaps = 18/122 (14%)

Query: 444 GASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSK-KLGVTALHVAAYFGQADT 502
           GA     N      +  AA+ G  + ++++ + +++N         T LH AA + +   
Sbjct: 1   GA---MGNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSV 57

Query: 503 VRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVRLLLNSAGVQVDA 562
           V  LL H           GA        + G+ PLH A   G+  V  LL+   G  V+ 
Sbjct: 58  VEYLLQH-----------GADV--HAKDKGGLVPLHNACSYGHYEVAELLV-KHGAVVNV 103

Query: 563 QT 564
             
Sbjct: 104 AD 105

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score =  102 bits (258), Expect = 4e-26
 Identities = 34/162 (20%), Positives = 60/162 (37%), Gaps = 37/162 (22%)

Query: 319 QTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLV 378
           +T LH+A+  G +   + LL  G+  +  D  G  P+H A  +   +V ++ L  H +LV
Sbjct: 11  ETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLL-QHKALV 69

Query: 379 TATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVR 438
             T    +                                    +PL  AA+ GH ++V+
Sbjct: 70  NTTGYQND------------------------------------SPLHDAAKNGHVDIVK 93

Query: 439 VLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALN 480
           +L+  GAS    N  G   V          +L     +++ +
Sbjct: 94  LLLSYGASRNAVNIFGLRPVDYTDDESMKSLLLLPEKNESSS 135

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score =  101 bits (255), Expect = 1e-25
 Identities = 39/144 (27%), Positives = 63/144 (43%), Gaps = 23/144 (15%)

Query: 229 GWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVSSGKSLKHSVM 288
           G T L IA  +G +  V  +L N +  +V D  G + LH A  HG+LKV           
Sbjct: 10  GETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVE--------- 60

Query: 289 SFRLPPHNIIPNGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATD 348
                         L+  H A+++    +  +PLH AA+ G + + KLLL  GAS +A +
Sbjct: 61  -------------LLL-QHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVN 106

Query: 349 DQGQKPIHVAAQNNFPEVAQIFLR 372
             G +P+      +   +  +  +
Sbjct: 107 IFGLRPVDYTDDESMKSLLLLPEK 130

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 98.6 bits (247), Expect = 1e-24
 Identities = 40/147 (27%), Positives = 60/147 (40%), Gaps = 22/147 (14%)

Query: 60  GAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVV 119
           G  P  T   G+T +H A+  G++ +++ LL++G DP  K+  G TPLH A  +   +VV
Sbjct: 1   GIDPF-TNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVV 59

Query: 120 DLLIQFVQNISQEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEAG 179
           +LL+Q             VN+      S LH A +    +            VKLLL  G
Sbjct: 60  ELLLQHKAL---------VNTTGYQNDSPLHDAAKNGHVD-----------IVKLLLSYG 99

Query: 180 ADVSLQTKQNHETAFHYCAVAGNNDVL 206
           A  +            Y        +L
Sbjct: 100 ASRNAVNIFGL-RPVDYTDDESMKSLL 125

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 97.5 bits (244), Expect = 3e-24
 Identities = 34/135 (25%), Positives = 59/135 (43%), Gaps = 15/135 (11%)

Query: 423 TPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVY 482
           T L +A+  G    V  L++ G+    ++  G+T +H A  +GH +V+E +   KA  V 
Sbjct: 12  TLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKA-LVN 70

Query: 483 SK-KLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAA 541
           +      + LH AA  G  D V+ LLS+           GAS      +  G+ P+    
Sbjct: 71  TTGYQNDSPLHDAAKNGHVDIVKLLLSY-----------GASR--NAVNIFGLRPVDYTD 117

Query: 542 YSGNENVVRLLLNSA 556
               ++++ L   + 
Sbjct: 118 DESMKSLLLLPEKNE 132

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 88.2 bits (220), Expect = 5e-21
 Identities = 33/179 (18%), Positives = 53/179 (29%), Gaps = 60/179 (33%)

Query: 99  KNKIGETPLHLASRNCKAEVVDLLIQFVQNISQEKVLEYVNSVNEDGASALHYACQVTKA 158
            N  GET LH+AS       V+ L+Q   +          N  +  G + LH AC     
Sbjct: 6   TNHRGETLLHIASIKGDIPSVEYLLQNGSD---------PNVKDHAGWTPLHEACNHGHL 56

Query: 159 ELIPITSKEDQKTVKLLLEAGADVSLQTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEI 218
           +            V+LLL+  A V                                    
Sbjct: 57  K-----------VVELLLQHKALV------------------------------------ 69

Query: 219 SKALNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKV 277
               N       +PL  A   GH+++V  +L+  A  +  +  G   +    +     +
Sbjct: 70  ----NTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMKSL 124

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 84.4 bits (210), Expect = 1e-19
 Identities = 31/148 (20%), Positives = 57/148 (38%), Gaps = 24/148 (16%)

Query: 259 DQEGRSALHLAAEHGYLKVSSGKSLKHSVMSFRLPPHNIIPNGFLVHDHAAVIDILTLRK 318
           +  G + LH+A+  G +     + L              + NG       +  ++     
Sbjct: 7   NHRGETLLHIASIKGDIPSV--EYL--------------LQNG-------SDPNVKDHAG 43

Query: 319 QTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLV 378
            TPLH A   G L+V +LLL   A ++ T  Q   P+H AA+N   ++ ++ L ++ +  
Sbjct: 44  WTPLHEACNHGHLKVVELLLQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLL-SYGASR 102

Query: 379 TATTKDGNTCAHIAAMQGSVGVIEELMK 406
            A    G         +    ++    K
Sbjct: 103 NAVNIFGLRPVDYTDDESMKSLLLLPEK 130

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 84.0 bits (209), Expect = 2e-19
 Identities = 33/134 (24%), Positives = 53/134 (39%), Gaps = 34/134 (25%)

Query: 11  ETPLHIAAR------VKDGDRCALMLLKSGAGPNLTN--------IAAR------VKDGD 50
           ET LHIA+       V+        LL++G+ PN+ +         A        V+   
Sbjct: 11  ETLLHIASIKGDIPSVE-------YLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVE--- 60

Query: 51  RCALMLLKSGAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLA 110
               +LL+  A  N T     +P+H AAK G++  ++LLL  G      N  G  P+   
Sbjct: 61  ----LLLQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYT 116

Query: 111 SRNCKAEVVDLLIQ 124
                  ++ L  +
Sbjct: 117 DDESMKSLLLLPEK 130

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 79.8 bits (198), Expect = 5e-18
 Identities = 39/206 (18%), Positives = 66/206 (32%), Gaps = 75/206 (36%)

Query: 142 NEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGADVSLQTKQNHETAFHYCAVAG 201
           N  G + LH A             K D  +V+ LL+ G+D                    
Sbjct: 7   NHRGETLLHIASI-----------KGDIPSVEYLLQNGSDP------------------- 36

Query: 202 NNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQE 261
                                N +   GWTPL  ACN GH+++V  +L + A V+    +
Sbjct: 37  ---------------------NVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQ 75

Query: 262 GRSALHLAAEHGYLKVSSGKSLKHSVMSFRLPPHNIIPNGFLVHDHAAVIDILTLRKQTP 321
             S LH AA++G++ +                         L+  + A  + + +    P
Sbjct: 76  NDSPLHDAAKNGHVDIVK----------------------LLL-SYGASRNAVNIFGLRP 112

Query: 322 LHLAAEAGQLQVCKLLLDLGASIDAT 347
           +    +     +  L      S  A+
Sbjct: 113 VDYTDDESMKSLLLLPEK-NESSSAS 137

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 77.1 bits (191), Expect = 4e-17
 Identities = 32/117 (27%), Positives = 47/117 (40%), Gaps = 16/117 (13%)

Query: 451 NKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSK-KLGVTALHVAAYFGQADTVRELLSH 509
           N  G T +H+A+  G    +E +  + + +   K   G T LH A   G    V  LL H
Sbjct: 7   NHRGETLLHIASIKGDIPSVEYLLQNGS-DPNVKDHAGWTPLHEACNHGHLKVVELLLQH 65

Query: 510 VPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVRLLLNSAGVQVDAQTQE 566
                       A            +PLH AA +G+ ++V+LLL S G   +A    
Sbjct: 66  -----------KALV--NTTGYQNDSPLHDAAKNGHVDIVKLLL-SYGASRNAVNIF 108

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 59.7 bits (146), Expect = 4e-11
 Identities = 23/84 (27%), Positives = 35/84 (41%), Gaps = 14/84 (16%)

Query: 480 NVYSKKLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHL 539
           + ++   G T LH+A+  G   +V  LL +           G+     +   +G TPLH 
Sbjct: 3   DPFTNHRGETLLHIASIKGDIPSVEYLLQN-----------GSDP--NVKDHAGWTPLHE 49

Query: 540 AAYSGNENVVRLLLNSAGVQVDAQ 563
           A   G+  VV LLL      V+  
Sbjct: 50  ACNHGHLKVVELLL-QHKALVNTT 72

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 52.0 bits (126), Expect = 2e-08
 Identities = 25/103 (24%), Positives = 32/103 (31%), Gaps = 34/103 (33%)

Query: 11  ETPLHIAAR------VKDGDRCALMLLKSGAGPNLTN--------IAAR------VKDGD 50
            TPLH A        V+       +LL+  A  N T          AA+      VK   
Sbjct: 44  WTPLHEACNHGHLKVVE-------LLLQHKALVNTTGYQNDSPLHDAAKNGHVDIVK--- 93

Query: 51  RCALMLLKSGAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDG 93
               +LL  GA  N     G  PV           L L  ++ 
Sbjct: 94  ----LLLSYGASRNAVNIFGLRPVDYTDDESMKSLLLLPEKNE 132

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score =  100 bits (253), Expect = 1e-25
 Identities = 57/136 (41%), Positives = 80/136 (58%), Gaps = 16/136 (11%)

Query: 423 TPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVY 482
           TPL LAA  GH  VV++L++AGA    ++K G T +HLAA+NGH +V++ +  + A +V 
Sbjct: 4   TPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA-DVN 62

Query: 483 SK-KLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAA 541
           +K K G T LH+AA  G  + V+ LL             GA        ++G TPLHLAA
Sbjct: 63  AKDKNGRTPLHLAARNGHLEVVKLLLEA-----------GADV--NAKDKNGRTPLHLAA 109

Query: 542 YSGNENVVRLLLNSAG 557
            +G+  VV+LLL  AG
Sbjct: 110 RNGHLEVVKLLL-EAG 124

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 99.7 bits (250), Expect = 4e-25
 Identities = 53/148 (35%), Positives = 79/148 (53%), Gaps = 25/148 (16%)

Query: 229 GWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVSSGKSLKHSVM 288
           G TPL +A   GH+E+V  +L   A V+  D+ GR+ LHLAA +G+L+V           
Sbjct: 2   GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVK--------- 52

Query: 289 SFRLPPHNIIPNGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATD 348
                         L+ +  A ++      +TPLHLAA  G L+V KLLL+ GA ++A D
Sbjct: 53  -------------LLL-EAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKD 98

Query: 349 DQGQKPIHVAAQNNFPEVAQIFLR--AH 374
             G+ P+H+AA+N   EV ++ L   A+
Sbjct: 99  KNGRTPLHLAARNGHLEVVKLLLEAGAY 126

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 99.0 bits (248), Expect = 7e-25
 Identities = 56/153 (36%), Positives = 80/153 (52%), Gaps = 37/153 (24%)

Query: 319 QTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLV 378
           +TPLHLAA  G L+V KLLL+ GA ++A D  G+ P+H+AA+N   EV ++ L    + V
Sbjct: 3   RTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLL-EAGADV 61

Query: 379 TATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVR 438
            A  K+G                                     TPL LAA  GH  VV+
Sbjct: 62  NAKDKNGR------------------------------------TPLHLAARNGHLEVVK 85

Query: 439 VLVKAGASCTDENKTGFTAVHLAAQNGHNQVLE 471
           +L++AGA    ++K G T +HLAA+NGH +V++
Sbjct: 86  LLLEAGADVNAKDKNGRTPLHLAARNGHLEVVK 118

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 95.5 bits (239), Expect = 1e-23
 Identities = 59/185 (31%), Positives = 83/185 (44%), Gaps = 60/185 (32%)

Query: 69  DGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVVDLLIQFVQN 128
           +G+TP+H AA+ G+L  ++LLLE G D   K+K G TPLHLA+RN   EVV LL++   +
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60

Query: 129 ISQEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGADVSLQTKQ 188
           +         N+ +++G + LH A +    E            VKLLLEAGADV      
Sbjct: 61  V---------NAKDKNGRTPLHLAARNGHLE-----------VVKLLLEAGADV------ 94

Query: 189 NHETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIACNRGHMELVNTM 248
                                             N +   G TPL +A   GH+E+V  +
Sbjct: 95  ----------------------------------NAKDKNGRTPLHLAARNGHLEVVKLL 120

Query: 249 LNNHA 253
           L   A
Sbjct: 121 LEAGA 125

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 85.9 bits (214), Expect = 2e-20
 Identities = 49/128 (38%), Positives = 80/128 (62%), Gaps = 7/128 (5%)

Query: 384 DGNTCAHIAAMQGSVGVIEELMKFDRSGV-ISARNRVTEATPLQLAAEGGHANVVRVLVK 442
           +G T  H+AA  G + V++ L++   +G  ++A+++    TPL LAA  GH  VV++L++
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLE---AGADVNAKDK-NGRTPLHLAARNGHLEVVKLLLE 56

Query: 443 AGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSK-KLGVTALHVAAYFGQAD 501
           AGA    ++K G T +HLAA+NGH +V++ +  + A +V +K K G T LH+AA  G  +
Sbjct: 57  AGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA-DVNAKDKNGRTPLHLAARNGHLE 115

Query: 502 TVRELLSH 509
            V+ LL  
Sbjct: 116 VVKLLLEA 123

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 83.5 bits (208), Expect = 2e-19
 Identities = 54/133 (40%), Positives = 73/133 (54%), Gaps = 34/133 (25%)

Query: 11  ETPLHIAAR------VKDGDRCALMLLKSGAGPNLTN--------IAAR------VKDGD 50
            TPLH+AAR      VK       +LL++GA  N  +        +AAR      VK   
Sbjct: 3   RTPLHLAARNGHLEVVK-------LLLEAGADVNAKDKNGRTPLHLAARNGHLEVVK--- 52

Query: 51  RCALMLLKSGAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLA 110
               +LL++GA  N    +G+TP+H AA+ G+L  ++LLLE G D   K+K G TPLHLA
Sbjct: 53  ----LLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLA 108

Query: 111 SRNCKAEVVDLLI 123
           +RN   EVV LL+
Sbjct: 109 ARNGHLEVVKLLL 121

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 77.0 bits (191), Expect = 4e-17
 Identities = 58/199 (29%), Positives = 79/199 (39%), Gaps = 74/199 (37%)

Query: 144 DGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGADVSLQTKQNHETAFHYCAVAGNN 203
           +G + LH A +    E            VKLLLEAGADV                     
Sbjct: 1   NGRTPLHLAARNGHLE-----------VVKLLLEAGADV--------------------- 28

Query: 204 DVLTGMLEQMSGTEISKALNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGR 263
                              N +   G TPL +A   GH+E+V  +L   A V+  D+ GR
Sbjct: 29  -------------------NAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGR 69

Query: 264 SALHLAAEHGYLKVSSGKSLKHSVMSFRLPPHNIIPNGFLVHDHAAVIDILTLRKQTPLH 323
           + LHLAA +G+L+V                         L+ +  A ++      +TPLH
Sbjct: 70  TPLHLAARNGHLEVVK----------------------LLL-EAGADVNAKDKNGRTPLH 106

Query: 324 LAAEAGQLQVCKLLLDLGA 342
           LAA  G L+V KLLL+ GA
Sbjct: 107 LAARNGHLEVVKLLLEAGA 125

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 60.8 bits (149), Expect = 1e-11
 Identities = 30/78 (38%), Positives = 40/78 (51%), Gaps = 14/78 (17%)

Query: 487 GVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNE 546
           G T LH+AA  G  + V+ LL             GA        ++G TPLHLAA +G+ 
Sbjct: 2   GRTPLHLAARNGHLEVVKLLLEA-----------GADV--NAKDKNGRTPLHLAARNGHL 48

Query: 547 NVVRLLLNSAGVQVDAQT 564
            VV+LLL  AG  V+A+ 
Sbjct: 49  EVVKLLL-EAGADVNAKD 65

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 50.8 bits (123), Expect = 4e-08
 Identities = 37/103 (35%), Positives = 53/103 (51%), Gaps = 34/103 (33%)

Query: 11  ETPLHIAAR------VKDGDRCALMLLKSGAGPNLTN--------IAAR------VKDGD 50
            TPLH+AAR      VK       +LL++GA  N  +        +AAR      VK   
Sbjct: 36  RTPLHLAARNGHLEVVK-------LLLEAGADVNAKDKNGRTPLHLAARNGHLEVVK--- 85

Query: 51  RCALMLLKSGAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDG 93
               +LL++GA  N    +G+TP+H AA+ G+L  ++LLLE G
Sbjct: 86  ----LLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAG 124

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 42.3 bits (101), Expect = 4e-05
 Identities = 18/33 (54%), Positives = 24/33 (72%), Gaps = 1/33 (3%)

Query: 532 SGMTPLHLAAYSGNENVVRLLLNSAGVQVDAQT 564
           +G TPLHLAA +G+  VV+LLL  AG  V+A+ 
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLL-EAGADVNAKD 32

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score =  100 bits (252), Expect = 2e-25
 Identities = 36/168 (21%), Positives = 59/168 (35%), Gaps = 37/168 (22%)

Query: 311 IDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIF 370
           I +L       L  AA  GQ++  + LL+ GA  +A +  G++PI V    +  +VA+  
Sbjct: 5   IHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMMGSA-QVAE-L 62

Query: 371 LRAHPSLVTATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAE 430
           L  H +          T                                    P+  AA 
Sbjct: 63  LLLHGAEPNCADPATLT-----------------------------------RPVHDAAR 87

Query: 431 GGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKA 478
            G  + + VL +AGA     +  G   V LA + GH  +   + ++  
Sbjct: 88  EGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIARYLHAATG 135

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 96.4 bits (241), Expect = 7e-24
 Identities = 32/152 (21%), Positives = 54/152 (35%), Gaps = 25/152 (16%)

Query: 223 NKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVSSGKS 282
           +         L  A  RG +E V  +L   A  +  ++ GR  + +    G  +V+    
Sbjct: 6   HMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMM-MGSAQVAE--- 61

Query: 283 LKHSVMSFRLPPHNIIPNGFLVHDHAAVIDILTLRKQT-PLHLAAEAGQLQVCKLLLDLG 341
                               L+  H A  +       T P+H AA  G L    +L   G
Sbjct: 62  -------------------LLL-LHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAG 101

Query: 342 ASIDATDDQGQKPIHVAAQNNFPEVAQIFLRA 373
           A +D  D  G+ P+ +A +    ++A+    A
Sbjct: 102 ARLDVCDAWGRLPVDLAEEQGHRDIARYLHAA 133

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 92.9 bits (232), Expect = 1e-22
 Identities = 30/195 (15%), Positives = 57/195 (29%), Gaps = 62/195 (31%)

Query: 60  GAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVV 119
             G ++        +  AA  G + T++ LLE G DP   N+ G  P+ +       +V 
Sbjct: 2   SPGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMMGSA-QVA 60

Query: 120 DLLIQFVQNISQEKVLEYVNSVNEDGA-SALHYACQVTKAELIPITSKEDQKTVKLLLEA 178
           +LL+               N  +       +H A +    +           T+ +L  A
Sbjct: 61  ELLLLHGAE---------PNCADPATLTRPVHDAAREGFLD-----------TLVVLHRA 100

Query: 179 GADVSLQTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIACN 238
           GA +                                        +   + G  P+ +A  
Sbjct: 101 GARL----------------------------------------DVCDAWGRLPVDLAEE 120

Query: 239 RGHMELVNTMLNNHA 253
           +GH ++   +     
Sbjct: 121 QGHRDIARYLHAATG 135

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 92.1 bits (230), Expect = 2e-22
 Identities = 34/133 (25%), Positives = 48/133 (36%), Gaps = 15/133 (11%)

Query: 423 TPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKA-LNV 481
             L  AA  G    VR L++AGA     N+ G   + +    G  QV E +    A  N 
Sbjct: 14  AGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMM-GSAQVAELLLLHGAEPNC 72

Query: 482 YSKKLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAA 541
                    +H AA  G  DT+  L              GA    ++    G  P+ LA 
Sbjct: 73  ADPATLTRPVHDAAREGFLDTLVVLHRA-----------GARL--DVCDAWGRLPVDLAE 119

Query: 542 YSGNENVVRLLLN 554
             G+ ++ R L  
Sbjct: 120 EQGHRDIARYLHA 132

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 86.3 bits (215), Expect = 2e-20
 Identities = 30/180 (16%), Positives = 51/180 (28%), Gaps = 62/180 (34%)

Query: 99  KNKIGETPLHLASRNCKAEVVDLLIQFVQNISQEKVLEYVNSVNEDGASALHYACQVTKA 158
                +  L  A+   + E V  L++   +          N++N  G   +         
Sbjct: 8   LGGSSDAGLATAAARGQVETVRQLLEAGAD---------PNALNRFGRRPIQVMMM---- 54

Query: 159 ELIPITSKEDQKTVKLLLEAGADVSLQTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEI 218
                 S +     +LLL  GA+                                     
Sbjct: 55  -----GSAQ---VAELLLLHGAEP------------------------------------ 70

Query: 219 SKALNKQTSIGWT-PLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKV 277
               N       T P+  A   G ++ +  +    AR+DV D  GR  + LA E G+  +
Sbjct: 71  ----NCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDI 126

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 84.4 bits (210), Expect = 1e-19
 Identities = 35/194 (18%), Positives = 57/194 (29%), Gaps = 62/194 (31%)

Query: 253 ARVDVFDQEGRSALHLAAEHGYLKVSSGKSLKHSVMSFRLPPHNIIPNGFLVHDHAAVID 312
             + +      + L  AA  G ++    + L              +  G       A  +
Sbjct: 3   PGIHMLGGSSDAGLATAAARGQVETV--RQL--------------LEAG-------ADPN 39

Query: 313 ILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQ-KPIHVAAQNNFPEVAQIFL 371
            L    + P+ +    G  QV +LLL  GA  +  D     +P+H AA+  F +   +  
Sbjct: 40  ALNRFGRRPIQVMMM-GSAQVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLH 98

Query: 372 RAHPSLVTATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEG 431
           RA    +      G                                      P+ LA E 
Sbjct: 99  RAGAR-LDVCDAWGR------------------------------------LPVDLAEEQ 121

Query: 432 GHANVVRVLVKAGA 445
           GH ++ R L  A  
Sbjct: 122 GHRDIARYLHAATG 135

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 84.0 bits (209), Expect = 2e-19
 Identities = 25/128 (19%), Positives = 47/128 (36%), Gaps = 22/128 (17%)

Query: 55  MLLKSGAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGET-PLHLASRN 113
            LL++GA PN     G+ P+      G+    +LLL  G +P   +    T P+H A+R 
Sbjct: 30  QLLEAGADPNALNRFGRRPIQVMM-MGSAQVAELLLLHGAEPNCADPATLTRPVHDAARE 88

Query: 114 CKAEVVDLLIQFVQNISQEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVK 173
              + + +L +             ++  +  G   +  A +           +  +   +
Sbjct: 89  GFLDTLVVLHRAGAR---------LDVCDAWGRLPVDLAEE-----------QGHRDIAR 128

Query: 174 LLLEAGAD 181
            L  A  D
Sbjct: 129 YLHAATGD 136

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 82.5 bits (205), Expect = 6e-19
 Identities = 34/123 (27%), Positives = 47/123 (38%), Gaps = 12/123 (9%)

Query: 11  ETPLHIAARVKDGDRCALMLLKSGAGPNLTN--------IAARVKDGDRCALMLLKSGAG 62
           +  L  AA     +     LL++GA PN  N        +        + A +LL  GA 
Sbjct: 13  DAGLATAAARGQVE-TVRQLLEAGADPNALNRFGRRPIQVMMM--GSAQVAELLLLHGAE 69

Query: 63  PNLTTDDGQT-PVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVVDL 121
           PN       T PVH AA+ G L TL +L   G      +  G  P+ LA      ++   
Sbjct: 70  PNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIARY 129

Query: 122 LIQ 124
           L  
Sbjct: 130 LHA 132

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 79.8 bits (198), Expect = 5e-18
 Identities = 33/206 (16%), Positives = 56/206 (27%), Gaps = 76/206 (36%)

Query: 138 VNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGADVSLQTKQNHETAFHYC 197
           ++ +     + L  A    + E           TV+ LLEAGAD                
Sbjct: 5   IHMLGGSSDAGLATAAARGQVE-----------TVRQLLEAGADP--------------- 38

Query: 198 AVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDV 257
                                    N     G  P+ +    G  ++   +L + A  + 
Sbjct: 39  -------------------------NALNRFGRRPIQVMMM-GSAQVAELLLLHGAEPNC 72

Query: 258 FDQEGR-SALHLAAEHGYLKVSSGKSLKHSVMSFRLPPHNIIPNGFLVHDHAAVIDILTL 316
            D       +H AA  G+L                           ++H   A +D+   
Sbjct: 73  ADPATLTRPVHDAAREGFLDTLV-----------------------VLHRAGARLDVCDA 109

Query: 317 RKQTPLHLAAEAGQLQVCKLLLDLGA 342
             + P+ LA E G   + + L     
Sbjct: 110 WGRLPVDLAEEQGHRDIARYLHAATG 135

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 72.1 bits (178), Expect = 2e-15
 Identities = 23/126 (18%), Positives = 42/126 (33%), Gaps = 18/126 (14%)

Query: 443 AGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSK-KLGVTALHVAAYFGQAD 501
                     +    +  AA  G  + + ++  + A +  +  + G   + V    G A 
Sbjct: 1   GSPGIHMLGGSSDAGLATAAARGQVETVRQLLEAGA-DPNALNRFGRRPIQVMMM-GSAQ 58

Query: 502 TVRELLSHVPGTVKSDPPTGASFLGELGSESGMT-PLHLAAYSGNENVVRLLLNSAGVQV 560
               LL H           GA         + +T P+H AA  G  + + +L   AG ++
Sbjct: 59  VAELLLLH-----------GAEP--NCADPATLTRPVHDAAREGFLDTLVVLH-RAGARL 104

Query: 561 DAQTQE 566
           D     
Sbjct: 105 DVCDAW 110

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 60.9 bits (149), Expect = 2e-11
 Identities = 19/97 (19%), Positives = 33/97 (34%), Gaps = 20/97 (20%)

Query: 12  TPLHIAARVKDGDRCALMLLKSGAGPNLTNIAARVKDGDRCALM-------------LLK 58
            P+ +        + A +LL  GA PN  +            +              L +
Sbjct: 47  RPIQVMMM--GSAQVAELLLLHGAEPNCAD-----PATLTRPVHDAAREGFLDTLVVLHR 99

Query: 59  SGAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGD 95
           +GA  ++    G+ PV  A + G+    + L    GD
Sbjct: 100 AGARLDVCDAWGRLPVDLAEEQGHRDIARYLHAATGD 136

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 99.4 bits (249), Expect = 5e-25
 Identities = 32/152 (21%), Positives = 50/152 (32%), Gaps = 37/152 (24%)

Query: 320 TPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVT 379
                A + G L   K  +  G  ++ T + G+KP+H AA     E+ + FL    + + 
Sbjct: 9   KEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILE-FLLLKGADIN 67

Query: 380 ATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRV 439
           A  K                                       TPL  A   GH + V++
Sbjct: 68  APDKHHI------------------------------------TPLLSAVYEGHVSCVKL 91

Query: 440 LVKAGASCTDENKTGFTAVHLAAQNGHNQVLE 471
           L+  GA  T +   G TA           +L+
Sbjct: 92  LLSKGADKTVKGPDGLTAFEATDNQAIKALLQ 123

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 93.6 bits (234), Expect = 4e-23
 Identities = 31/142 (21%), Positives = 46/142 (32%), Gaps = 23/142 (16%)

Query: 227 SIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVSSGKSLKHS 286
           S+     + A   G ++ V   +     V+   + GR  LH AA+ G L++     L+  
Sbjct: 5   SMCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEI-----LE-- 57

Query: 287 VMSFRLPPHNIIPNGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDA 346
                          FL+    A I+       TPL  A   G +   KLLL  GA    
Sbjct: 58  ---------------FLL-LKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTV 101

Query: 347 TDDQGQKPIHVAAQNNFPEVAQ 368
               G              + Q
Sbjct: 102 KGPDGLTAFEATDNQAIKALLQ 123

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 90.5 bits (226), Expect = 6e-22
 Identities = 28/177 (15%), Positives = 48/177 (27%), Gaps = 60/177 (33%)

Query: 69  DGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVVDLLIQFVQN 128
                   A K G+L  ++  +  G D     + G  PLH A+   + E+++ L+    +
Sbjct: 6   MCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGAD 65

Query: 129 ISQEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGADVSLQTKQ 188
                    +N+ ++   + L  A                   VKLLL  GAD       
Sbjct: 66  ---------INAPDKHHITPLLSAVYEGHVS-----------CVKLLLSKGADK------ 99

Query: 189 NHETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIACNRGHMELV 245
                                               +   G T      N+    L+
Sbjct: 100 ----------------------------------TVKGPDGLTAFEATDNQAIKALL 122

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 89.8 bits (224), Expect = 9e-22
 Identities = 27/129 (20%), Positives = 46/129 (35%), Gaps = 15/129 (11%)

Query: 423 TPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVY 482
                A + G  + V+  V  G       + G   +H AA  G  ++LE +    A ++ 
Sbjct: 9   KEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGA-DIN 67

Query: 483 SK-KLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAA 541
           +  K  +T L  A Y G    V+ LLS            GA     +    G+T      
Sbjct: 68  APDKHHITPLLSAVYEGHVSCVKLLLSK-----------GADK--TVKGPDGLTAFEATD 114

Query: 542 YSGNENVVR 550
               + +++
Sbjct: 115 NQAIKALLQ 123

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 86.3 bits (215), Expect = 2e-20
 Identities = 31/179 (17%), Positives = 48/179 (26%), Gaps = 60/179 (33%)

Query: 99  KNKIGETPLHLASRNCKAEVVDLLIQFVQNISQEKVLEYVNSVNEDGASALHYACQVTKA 158
              + +     A +N   + V   +   ++         VN   E G   LHYA    + 
Sbjct: 3   LGSMCDKEFMWALKNGDLDEVKDYVAKGED---------VNRTLEGGRKPLHYAADCGQL 53

Query: 159 ELIPITSKEDQKTVKLLLEAGADVSLQTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEI 218
           E            ++ LL  GAD+                                    
Sbjct: 54  E-----------ILEFLLLKGADI------------------------------------ 66

Query: 219 SKALNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKV 277
               N       TPLL A   GH+  V  +L+  A   V   +G +A           +
Sbjct: 67  ----NAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFEATDNQAIKAL 121

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 80.9 bits (201), Expect = 1e-18
 Identities = 26/99 (26%), Positives = 35/99 (35%), Gaps = 9/99 (9%)

Query: 56  LLKSGAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCK 115
            +  G   N T + G+ P+H AA  G L  L+ LL  G D    +K   TPL  A     
Sbjct: 26  YVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGH 85

Query: 116 AEVVDLLIQFVQNISQEKVLEYVNSVNEDGASALHYACQ 154
              V LL+    +               DG +A      
Sbjct: 86  VSCVKLLLSKGAD---------KTVKGPDGLTAFEATDN 115

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 77.4 bits (192), Expect = 2e-17
 Identities = 27/117 (23%), Positives = 43/117 (36%), Gaps = 16/117 (13%)

Query: 451 NKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSK-KLGVTALHVAAYFGQADTVRELLSH 509
                     A +NG    +++  +    +V    + G   LH AA  GQ + +  LL  
Sbjct: 4   GSMCDKEFMWALKNGDLDEVKDYVAKGE-DVNRTLEGGRKPLHYAADCGQLEILEFLLLK 62

Query: 510 VPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVRLLLNSAGVQVDAQTQE 566
                      GA        +  +TPL  A Y G+ + V+LLL S G     +  +
Sbjct: 63  -----------GADI--NAPDKHHITPLLSAVYEGHVSCVKLLL-SKGADKTVKGPD 105

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 77.1 bits (191), Expect = 3e-17
 Identities = 28/141 (19%), Positives = 47/141 (33%), Gaps = 24/141 (17%)

Query: 262 GRSALHLAAEHGYLKVSSGKSLKHSVMSFRLPPHNIIPNGFLVHDHAAVIDILTLRKQTP 321
                  A ++G L     K                +  G         ++      + P
Sbjct: 7   CDKEFMWALKNGDLDEV--KDY--------------VAKG-------EDVNRTLEGGRKP 43

Query: 322 LHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTAT 381
           LH AA+ GQL++ + LL  GA I+A D     P+  A         ++ L +  +  T  
Sbjct: 44  LHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLL-SKGADKTVK 102

Query: 382 TKDGNTCAHIAAMQGSVGVIE 402
             DG T       Q    +++
Sbjct: 103 GPDGLTAFEATDNQAIKALLQ 123

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 77.1 bits (191), Expect = 3e-17
 Identities = 26/128 (20%), Positives = 38/128 (29%), Gaps = 32/128 (25%)

Query: 11  ETPLHIAAR------VKDGDRCALMLLKSGAGPNLTNIAARVKDGDRCALM--------- 55
           +     A +      VK         +  G   N T      + G R  L          
Sbjct: 8   DKEFMWALKNGDLDEVK-------DYVAKGEDVNRTL-----EGG-RKPLHYAADCGQLE 54

Query: 56  ----LLKSGAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLAS 111
               LL  GA  N       TP+ +A   G++  ++LLL  G D   K   G T      
Sbjct: 55  ILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFEATD 114

Query: 112 RNCKAEVV 119
                 ++
Sbjct: 115 NQAIKALL 122

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 64.3 bits (158), Expect = 9e-13
 Identities = 23/195 (11%), Positives = 43/195 (22%), Gaps = 74/195 (37%)

Query: 141 VNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGADVSLQTKQNHETAFHYCAVA 200
           +         +A +             D   VK  +  G DV                  
Sbjct: 3   LGSMCDKEFMWALK-----------NGDLDEVKDYVAKGEDV------------------ 33

Query: 201 GNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQ 260
                                 N+    G  PL  A + G +E++  +L   A ++  D+
Sbjct: 34  ----------------------NRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDK 71

Query: 261 EGRSALHLAAEHGYLKVSSGKSLKHSVMSFRLPPHNIIPNGFLVHDHAAVIDILTLRKQT 320
              + L  A   G++                           L+    A   +      T
Sbjct: 72  HHITPLLSAVYEGHVSCVK----------------------LLL-SKGADKTVKGPDGLT 108

Query: 321 PLHLAAEAGQLQVCK 335
                       + +
Sbjct: 109 AFEATDNQAIKALLQ 123

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 43.5 bits (104), Expect = 2e-05
 Identities = 22/95 (23%), Positives = 27/95 (28%), Gaps = 32/95 (33%)

Query: 12  TPLHIAAR------VKDGDRCALMLLKSGAGPNLTNIAARVKDGDRCALM---------- 55
            PLH AA       ++        LL  GA  N  +     K      L+          
Sbjct: 42  KPLHYAADCGQLEILE-------FLLLKGADINAPD-----KHH-ITPLLSAVYEGHVSC 88

Query: 56  ---LLKSGAGPNLTTDDGQTPVHAAAKYGNLVTLQ 87
              LL  GA   +   DG T   A         LQ
Sbjct: 89  VKLLLSKGADKTVKGPDGLTAFEATDNQAIKALLQ 123

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 98.6 bits (246), Expect = 5e-24
 Identities = 30/197 (15%), Positives = 61/197 (30%), Gaps = 23/197 (11%)

Query: 69  DGQTPVHAAAKYGNLVTLQLLLEDGGDP---MYKNKIGETPLHLASRNCKAEVVDLLIQF 125
                V AAA  G       L E G +    + K+ I    L   +   + ++   LI  
Sbjct: 5   SEYRTVSAAAMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMFLIN- 63

Query: 126 VQNISQEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGADVSLQ 185
            +          + S  ++G +      Q    ++         +  K+ LE GAD++  
Sbjct: 64  -KGAD-------IKSRTKEGTTLFFPLFQGGGNDIT-----GTTELCKIFLEKGADITAL 110

Query: 186 TKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKA---LNKQTSIGWTPLLIACNRGHM 242
            K  ++            D     +  +     S++   L  +   G T L         
Sbjct: 111 YK-PYKIVVFKNIFNYFVDENE--MIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKP 167

Query: 243 ELVNTMLNNHARVDVFD 259
             +  M +   + ++ +
Sbjct: 168 IALKMMEDYIKKYNLKE 184

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 89.3 bits (222), Expect = 8e-21
 Identities = 25/199 (12%), Positives = 53/199 (26%), Gaps = 31/199 (15%)

Query: 380 ATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEA---TPLQLAAEGGHANV 436
           +           AAM G+     EL +    G     + +        L+   +     +
Sbjct: 1   SNAMSEYRTVSAAAMLGTYEDFLELFE---KGYEDKESVLKSNILYDVLRNNNDEARYKI 57

Query: 437 VRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKAL-----NVYSK-KLGVTA 490
              L+  GA      K G T      Q G N +       K       ++ +  K     
Sbjct: 58  SMFLINKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIV 117

Query: 491 LHVAAYFGQADT------VRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSG 544
           +    +    D        + + S           +G      +  + G+T L       
Sbjct: 118 VFKNIFNYFVDENEMIPLYKLIFSQ----------SGLQL--LIKDKWGLTALEFVKRCQ 165

Query: 545 NENVVRLLLNSAGVQVDAQ 563
               ++++      + + +
Sbjct: 166 KPIALKMME-DYIKKYNLK 183

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 89.3 bits (222), Expect = 8e-21
 Identities = 23/219 (10%), Positives = 51/219 (23%), Gaps = 51/219 (23%)

Query: 144 DGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGADVSLQTKQNHETAFHYCAVAGNN 203
                +  A                 +    L E G +     +   ++   Y  +  NN
Sbjct: 5   SEYRTVSAAAM-----------LGTYEDFLELFEKGYED---KESVLKSNILYDVLRNNN 50

Query: 204 DVLTGMLEQMSGTEISKAL-------NKQTSIGWTPLLIACNRGHMELVNTM------LN 250
                     +  +IS  L         +T  G T        G  ++  T       L 
Sbjct: 51  --------DEARYKISMFLINKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLE 102

Query: 251 NHARVDVFDQEGRSALHLAAEHGYLKVSSGKSLKHSVMSFRLPPHNIIPNGFLVHDHAAV 310
             A +    +  +  +     + ++  +    L                   +       
Sbjct: 103 KGADITALYKPYKIVVFKNIFNYFVDENEMIPLYK----------------LIFSQSGLQ 146

Query: 311 IDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDD 349
           + I      T L       +    K++ D     +  ++
Sbjct: 147 LLIKDKWGLTALEFVKRCQKPIALKMMEDYIKKYNLKEN 185

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 89.0 bits (221), Expect = 1e-20
 Identities = 21/193 (10%), Positives = 53/193 (27%), Gaps = 27/193 (13%)

Query: 188 QNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIACNRGHMELVNT 247
            +        A+ G  +    + E+  G E  K    +++I +  L    +    ++   
Sbjct: 4   MSEYRTVSAAAMLGTYEDFLELFEK--GYED-KESVLKSNILYDVLRNNNDEARYKISMF 60

Query: 248 MLNNHARVDVFDQEGRSALHLAAEHGYLKVSSGKSLKHSVMSFRLPPHNIIPNGFLVHDH 307
           ++N  A +    +EG +      + G   ++    L                    + + 
Sbjct: 61  LINKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCK----------------IFL-EK 103

Query: 308 AAVIDILTLRKQTPLHLAAEAGQLQVCK-------LLLDLGASIDATDDQGQKPIHVAAQ 360
            A I  L    +  +        +   +       +    G  +   D  G   +    +
Sbjct: 104 GADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKR 163

Query: 361 NNFPEVAQIFLRA 373
              P   ++    
Sbjct: 164 CQKPIALKMMEDY 176

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 87.0 bits (216), Expect = 5e-20
 Identities = 22/227 (9%), Positives = 53/227 (23%), Gaps = 64/227 (28%)

Query: 229 GWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVSSGKSLKHSVM 288
            +  +  A   G  E    +       +  +   +S +                      
Sbjct: 6   EYRTVSAAAMLGTYEDFLELFEKGY--EDKESVLKSNILYDV------------------ 45

Query: 289 SFRLPPHNIIPNGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATD 348
                                            L    +  + ++   L++ GA I +  
Sbjct: 46  ---------------------------------LRNNNDEARYKISMFLINKGADIKSRT 72

Query: 349 DQGQKPIHVAAQNNFPEVAQIFLRAHPSL-----VTATTKDGNTCAHIAAMQGSVGVIEE 403
            +G        Q    ++          L     +TA  K              V   E 
Sbjct: 73  KEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEM 132

Query: 404 L----MKFDRSGV-ISARNRVTEATPLQLAAEGGHANVVRVLVKAGA 445
           +    + F +SG+ +  +++    T L+          ++++     
Sbjct: 133 IPLYKLIFSQSGLQLLIKDK-WGLTALEFVKRCQKPIALKMMEDYIK 178

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 72.4 bits (178), Expect = 5e-15
 Identities = 17/137 (12%), Positives = 37/137 (27%), Gaps = 23/137 (16%)

Query: 10  RETPLHIAARVKDGDRCALM---LLKSGAGPNLTN--------IAAR-----VKDGDRCA 53
           +   L+   R  + +    +   L+  GA                 +     +       
Sbjct: 38  KSNILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELC 97

Query: 54  LMLLKSGAGPNLTTDDGQTPVHAAAKYGNL-------VTLQLLLEDGGDPMYKNKIGETP 106
            + L+ GA         +  V        +       +   +  + G   + K+K G T 
Sbjct: 98  KIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTA 157

Query: 107 LHLASRNCKAEVVDLLI 123
           L    R  K   + ++ 
Sbjct: 158 LEFVKRCQKPIALKMME 174

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 56.6 bits (137), Expect = 2e-09
 Identities = 11/110 (10%), Positives = 26/110 (23%), Gaps = 19/110 (17%)

Query: 11  ETPLHIAAR-----VKDGDRCALMLLKSGAGPNLTN--------IAAR------VKDGDR 51
            T      +     +        + L+ GA                         +    
Sbjct: 76  TTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPL 135

Query: 52  CALMLLKSGAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNK 101
             L+  +SG    +    G T +    +    + L+++ +       K  
Sbjct: 136 YKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMMEDYIKKYNLKEN 185

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 94.0 bits (235), Expect = 3e-23
 Identities = 43/135 (31%), Positives = 65/135 (48%), Gaps = 21/135 (15%)

Query: 62  GPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVVDL 121
           G    + DG TP+H AAK G+   ++ LL  G D   ++K G TPLHLA++N  AE+V L
Sbjct: 1   GHMWGSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKL 60

Query: 122 LIQFVQNISQEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGAD 181
           L+    ++         N+ ++DG +  H A +    E            VKLL   GAD
Sbjct: 61  LLAKGADV---------NARSKDGNTPEHLAKKNGHHE-----------IVKLLDAKGAD 100

Query: 182 VSLQTKQNHETAFHY 196
           V+ ++        H+
Sbjct: 101 VNARSW-GSSHHHHH 114

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 82.0 bits (204), Expect = 5e-19
 Identities = 39/141 (27%), Positives = 56/141 (39%), Gaps = 37/141 (26%)

Query: 319 QTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLV 378
            TPLH AA+ G  +  K LL  GA ++A    G  P+H+AA+N   E+ ++ L A  + V
Sbjct: 10  NTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLL-AKGADV 68

Query: 379 TATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVR 438
            A +KDGN                                    TP  LA + GH  +V+
Sbjct: 69  NARSKDGN------------------------------------TPEHLAKKNGHHEIVK 92

Query: 439 VLVKAGASCTDENKTGFTAVH 459
           +L   GA     +       H
Sbjct: 93  LLDAKGADVNARSWGSSHHHH 113

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 81.3 bits (202), Expect = 7e-19
 Identities = 34/128 (26%), Positives = 54/128 (42%), Gaps = 23/128 (17%)

Query: 229 GWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVSSGKSLKHSVM 288
           G TPL  A   GH E V  +L+  A V+   ++G + LHLAA++G+ ++           
Sbjct: 9   GNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVK--------- 59

Query: 289 SFRLPPHNIIPNGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATD 348
                         L+    A ++  +    TP HLA + G  ++ KLL   GA ++A  
Sbjct: 60  -------------LLL-AKGADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNARS 105

Query: 349 DQGQKPIH 356
                  H
Sbjct: 106 WGSSHHHH 113

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 79.7 bits (198), Expect = 3e-18
 Identities = 33/97 (34%), Positives = 48/97 (49%), Gaps = 9/97 (9%)

Query: 55  MLLKSGAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNC 114
            LL  GA  N  + DG TP+H AAK G+   ++LLL  G D   ++K G TP HLA +N 
Sbjct: 27  KLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHLAKKNG 86

Query: 115 KAEVVDLLIQFVQNISQEKVLEYVNSVNEDGASALHY 151
             E+V LL     ++         N+ +   +   H+
Sbjct: 87  HHEIVKLLDAKGADV---------NARSWGSSHHHHH 114

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 78.6 bits (195), Expect = 7e-18
 Identities = 40/115 (34%), Positives = 64/115 (55%), Gaps = 16/115 (13%)

Query: 451 NKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSK-KLGVTALHVAAYFGQADTVRELLSH 509
           +K G T +H AA+NGH + ++++ S  A +V ++ K G T LH+AA  G A+ V+ LL+ 
Sbjct: 6   SKDGNTPLHNAAKNGHAEEVKKLLSKGA-DVNARSKDGNTPLHLAAKNGHAEIVKLLLAK 64

Query: 510 VPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVRLLLNSAGVQVDAQT 564
                      GA       S+ G TP HLA  +G+  +V+LL  + G  V+A++
Sbjct: 65  -----------GADV--NARSKDGNTPEHLAKKNGHHEIVKLLD-AKGADVNARS 105

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 75.9 bits (188), Expect = 6e-17
 Identities = 42/171 (24%), Positives = 60/171 (35%), Gaps = 60/171 (35%)

Query: 97  MYKNKIGETPLHLASRNCKAEVVDLLIQFVQNISQEKVLEYVNSVNEDGASALHYACQVT 156
           M+ +K G TPLH A++N  AE V  L+    ++         N+ ++DG + LH A +  
Sbjct: 3   MWGSKDGNTPLHNAAKNGHAEEVKKLLSKGADV---------NARSKDGNTPLHLAAKNG 53

Query: 157 KAELIPITSKEDQKTVKLLLEAGADVSLQTKQNHETAFHYCAVAGNNDVLTGMLEQMSGT 216
            AE            VKLLL  GADV                                  
Sbjct: 54  HAE-----------IVKLLLAKGADV---------------------------------- 68

Query: 217 EISKALNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALH 267
                 N ++  G TP  +A   GH E+V  +    A V+          H
Sbjct: 69  ------NARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNARSWGSSHHHH 113

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 74.7 bits (185), Expect = 1e-16
 Identities = 33/135 (24%), Positives = 57/135 (42%), Gaps = 24/135 (17%)

Query: 256 DVFDQEGRSALHLAAEHGYLKVSSGKSLKHSVMSFRLPPHNIIPNGFLVHDHAAVIDILT 315
               ++G + LH AA++G+ +                          L+    A ++  +
Sbjct: 3   MWGSKDGNTPLHNAAKNGHAEEVK----------------------KLL-SKGADVNARS 39

Query: 316 LRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHP 375
               TPLHLAA+ G  ++ KLLL  GA ++A    G  P H+A +N   E+ ++   A  
Sbjct: 40  KDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHLAKKNGHHEIVKLLD-AKG 98

Query: 376 SLVTATTKDGNTCAH 390
           + V A +   +   H
Sbjct: 99  ADVNARSWGSSHHHH 113

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 71.6 bits (177), Expect = 2e-15
 Identities = 38/113 (33%), Positives = 64/113 (56%), Gaps = 7/113 (6%)

Query: 382 TKDGNTCAHIAAMQGSVGVIEELMKFDRSGV-ISARNRVTEATPLQLAAEGGHANVVRVL 440
           +KDGNT  H AA  G    +++L+     G  ++AR++    TPL LAA+ GHA +V++L
Sbjct: 6   SKDGNTPLHNAAKNGHAEEVKKLLS---KGADVNARSK-DGNTPLHLAAKNGHAEIVKLL 61

Query: 441 VKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSK-KLGVTALH 492
           +  GA     +K G T  HLA +NGH+++++ + +  A +V ++        H
Sbjct: 62  LAKGADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGA-DVNARSWGSSHHHH 113

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 61.6 bits (151), Expect = 6e-12
 Identities = 33/136 (24%), Positives = 51/136 (37%), Gaps = 51/136 (37%)

Query: 142 NEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGADVSLQTKQNHETAFHYCAVAG 201
           ++DG + LH A +   AE            VK LL  GADV                   
Sbjct: 6   SKDGNTPLHNAAKNGHAE-----------EVKKLLSKGADV------------------- 35

Query: 202 NNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQE 261
                                N ++  G TPL +A   GH E+V  +L   A V+   ++
Sbjct: 36  ---------------------NARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKD 74

Query: 262 GRSALHLAAEHGYLKV 277
           G +  HLA ++G+ ++
Sbjct: 75  GNTPEHLAKKNGHHEI 90

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 56.2 bits (137), Expect = 5e-10
 Identities = 26/104 (25%), Positives = 35/104 (33%), Gaps = 39/104 (37%)

Query: 11  ETPLHIAAR------VKDGDRCALMLLKSGAGPNLTNIAARVKDGDRCALMLLKSGAGPN 64
            TPLH+AA+      VK                                 +LL  GA  N
Sbjct: 43  NTPLHLAAKNGHAEIVK---------------------------------LLLAKGADVN 69

Query: 65  LTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLH 108
             + DG TP H A K G+   ++LL   G D   ++       H
Sbjct: 70  ARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNARSWGSSHHHH 113

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 41.6 bits (99), Expect = 6e-05
 Identities = 17/36 (47%), Positives = 23/36 (63%), Gaps = 1/36 (2%)

Query: 528 LGSESGMTPLHLAAYSGNENVVRLLLNSAGVQVDAQ 563
            GS+ G TPLH AA +G+   V+ LL S G  V+A+
Sbjct: 4   WGSKDGNTPLHNAAKNGHAEEVKKLL-SKGADVNAR 38

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 92.1 bits (230), Expect = 2e-22
 Identities = 40/159 (25%), Positives = 69/159 (43%), Gaps = 26/159 (16%)

Query: 213 MSGTEISKALNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEH 272
           M G+      +   S     LL A   G  + V  ++ N A V+  D+ G + L+LA  H
Sbjct: 1   MRGSHH---HHHHGSDLGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAH 57

Query: 273 GYLKVSSGKSLKHSVMSFRLPPHNIIPNGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQ 332
           G+L++                         L+  + A ++ +     TPLHLAA  G L+
Sbjct: 58  GHLEIVE----------------------VLL-KNGADVNAVDAIGFTPLHLAAFIGHLE 94

Query: 333 VCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFL 371
           + ++LL  GA ++A D  G+    ++  N   ++A+I  
Sbjct: 95  IAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEILQ 133

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 90.9 bits (227), Expect = 7e-22
 Identities = 36/132 (27%), Positives = 63/132 (47%), Gaps = 15/132 (11%)

Query: 423 TPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVY 482
             L  AA  G  + VR+L+  GA    +++ G T ++LA  +GH +++E +  + A +V 
Sbjct: 16  KKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGA-DVN 74

Query: 483 SK-KLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAA 541
           +   +G T LH+AA+ G  +    LL H           GA        + G T   ++ 
Sbjct: 75  AVDAIGFTPLHLAAFIGHLEIAEVLLKH-----------GADV--NAQDKFGKTAFDISI 121

Query: 542 YSGNENVVRLLL 553
            +GNE++  +L 
Sbjct: 122 GNGNEDLAEILQ 133

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 88.6 bits (221), Expect = 3e-21
 Identities = 39/152 (25%), Positives = 62/152 (40%), Gaps = 37/152 (24%)

Query: 320 TPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVT 379
             L  AA AGQ    ++L+  GA ++A D+ G  P+++A  +   E+ ++ L  + + V 
Sbjct: 16  KKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLL-KNGADVN 74

Query: 380 ATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRV 439
           A    G                                     TPL LAA  GH  +  V
Sbjct: 75  AVDAIGF------------------------------------TPLHLAAFIGHLEIAEV 98

Query: 440 LVKAGASCTDENKTGFTAVHLAAQNGHNQVLE 471
           L+K GA    ++K G TA  ++  NG+  + E
Sbjct: 99  LLKHGADVNAQDKFGKTAFDISIGNGNEDLAE 130

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 85.5 bits (213), Expect = 5e-20
 Identities = 40/128 (31%), Positives = 58/128 (45%), Gaps = 7/128 (5%)

Query: 384 DGNTCAHIAAMQGSVGVIEELMKFDRSGV-ISARNRVTEATPLQLAAEGGHANVVRVLVK 442
           D       AA  G    +  LM    +G  ++A++     TPL LA   GH  +V VL+K
Sbjct: 13  DLGKKLLEAARAGQDDEVRILMA---NGADVNAKDE-YGLTPLYLATAHGHLEIVEVLLK 68

Query: 443 AGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSK-KLGVTALHVAAYFGQAD 501
            GA     +  GFT +HLAA  GH ++ E +    A +V ++ K G TA  ++   G  D
Sbjct: 69  NGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGA-DVNAQDKFGKTAFDISIGNGNED 127

Query: 502 TVRELLSH 509
               L   
Sbjct: 128 LAEILQKL 135

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 84.4 bits (210), Expect = 1e-19
 Identities = 38/137 (27%), Positives = 67/137 (48%), Gaps = 21/137 (15%)

Query: 69  DGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVVDLLIQFVQN 128
           D    +  AA+ G    +++L+ +G D   K++ G TPL+LA+ +   E+V++L++   +
Sbjct: 13  DLGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGAD 72

Query: 129 ISQEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGADVSLQTKQ 188
           +         N+V+  G + LH A  +   E             ++LL+ GADV+ Q K 
Sbjct: 73  V---------NAVDAIGFTPLHLAAFIGHLE-----------IAEVLLKHGADVNAQDK- 111

Query: 189 NHETAFHYCAVAGNNDV 205
             +TAF      GN D+
Sbjct: 112 FGKTAFDISIGNGNEDL 128

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 78.6 bits (195), Expect = 1e-17
 Identities = 35/175 (20%), Positives = 64/175 (36%), Gaps = 60/175 (34%)

Query: 103 GETPLHLASRNCKAEVVDLLIQFVQNISQEKVLEYVNSVNEDGASALHYACQVTKAELIP 162
               L  A+R  + + V +L+    ++         N+ +E G + L+ A          
Sbjct: 14  LGKKLLEAARAGQDDEVRILMANGADV---------NAKDEYGLTPLYLATA-------- 56

Query: 163 ITSKEDQKTVKLLLEAGADVSLQTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKAL 222
               E    V++LL+ GADV                                        
Sbjct: 57  HGHLE---IVEVLLKNGADV---------------------------------------- 73

Query: 223 NKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKV 277
           N   +IG+TPL +A   GH+E+   +L + A V+  D+ G++A  ++  +G   +
Sbjct: 74  NAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDL 128

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 76.7 bits (190), Expect = 5e-17
 Identities = 34/125 (27%), Positives = 56/125 (44%), Gaps = 20/125 (16%)

Query: 12  TPLHIAARVKDGDRCALMLLKSGAGPNLTNIAARVKDGDRCALM-------------LLK 58
             L  AAR    D    +L+ +GA     ++ A+ + G    L              LLK
Sbjct: 16  KKLLEAAR-AGQDDEVRILMANGA-----DVNAKDEYG-LTPLYLATAHGHLEIVEVLLK 68

Query: 59  SGAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEV 118
           +GA  N     G TP+H AA  G+L   ++LL+ G D   ++K G+T   ++  N   ++
Sbjct: 69  NGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDL 128

Query: 119 VDLLI 123
            ++L 
Sbjct: 129 AEILQ 133

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 73.6 bits (182), Expect = 6e-16
 Identities = 38/147 (25%), Positives = 58/147 (39%), Gaps = 24/147 (16%)

Query: 262 GRSALHLAAEHGYLKVSSGKSLKHSVMSFRLPPHNIIPNGFLVHDHAAVIDILTLRKQTP 321
               L  AA  G                             L+  + A ++       TP
Sbjct: 14  LGKKLLEAARAGQDDEVR----------------------ILM-ANGADVNAKDEYGLTP 50

Query: 322 LHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTAT 381
           L+LA   G L++ ++LL  GA ++A D  G  P+H+AA     E+A+  L  H + V A 
Sbjct: 51  LYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFIGHLEIAE-VLLKHGADVNAQ 109

Query: 382 TKDGNTCAHIAAMQGSVGVIEELMKFD 408
            K G T   I+   G+  + E L K +
Sbjct: 110 DKFGKTAFDISIGNGNEDLAEILQKLN 136

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 65.1 bits (160), Expect = 6e-13
 Identities = 31/111 (27%), Positives = 51/111 (45%), Gaps = 16/111 (14%)

Query: 454 GFTAVHLAAQNGHNQVLEEMRSSKALNVYSK-KLGVTALHVAAYFGQADTVRELLSHVPG 512
               +  AA+ G +  +  + ++ A +V +K + G+T L++A   G  + V  LL +   
Sbjct: 14  LGKKLLEAARAGQDDEVRILMANGA-DVNAKDEYGLTPLYLATAHGHLEIVEVLLKN--- 69

Query: 513 TVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVRLLLNSAGVQVDAQ 563
                   GA          G TPLHLAA+ G+  +  +LL   G  V+AQ
Sbjct: 70  --------GADV--NAVDAIGFTPLHLAAFIGHLEIAEVLL-KHGADVNAQ 109

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 64.7 bits (159), Expect = 9e-13
 Identities = 35/160 (21%), Positives = 63/160 (39%), Gaps = 29/160 (18%)

Query: 179 GADVSLQTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIACN 238
           G+        +        A AG +D +  ++    G ++    N +   G TPL +A  
Sbjct: 3   GSHHHHHHGSDLGKKLLEAARAGQDDEVRILMAN--GADV----NAKDEYGLTPLYLATA 56

Query: 239 RGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVSSGKSLKHSVMSFRLPPHNII 298
            GH+E+V  +L N A V+  D  G + LHLAA  G+L+++                    
Sbjct: 57  HGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFIGHLEIAE------------------- 97

Query: 299 PNGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLL 338
               L+  H A ++      +T   ++   G   + ++L 
Sbjct: 98  ---VLL-KHGADVNAQDKFGKTAFDISIGNGNEDLAEILQ 133

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 44.7 bits (107), Expect = 7e-06
 Identities = 24/100 (24%), Positives = 36/100 (36%), Gaps = 32/100 (32%)

Query: 11  ETPLHIAAR------VKDGDRCALMLLKSGAGPNLTNIAARVKDGDRCALM--------- 55
            TPL++A        V+       +LLK+GA     ++ A    G    L          
Sbjct: 48  LTPLYLATAHGHLEIVE-------VLLKNGA-----DVNAVDAIG-FTPLHLAAFIGHLE 94

Query: 56  ----LLKSGAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLE 91
               LLK GA  N     G+T    +   GN    ++L +
Sbjct: 95  IAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEILQK 134

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 81.1 bits (201), Expect = 8e-19
 Identities = 29/126 (23%), Positives = 52/126 (41%), Gaps = 18/126 (14%)

Query: 428 AAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSK-KL 486
            +   H +    LV  G+            +  AA+ G +  +  + ++ A +V +K K 
Sbjct: 1   GSSHHHHHHSSGLVPRGS---HMGSDLGKKLLEAARAGQDDEVRILMANGA-DVAAKDKN 56

Query: 487 GVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNE 546
           G T LH+AA  G  + V+ LL             GA    +   + G T   ++  +GNE
Sbjct: 57  GSTPLHLAARNGHLEVVKLLLEA-----------GADVXAQ--DKFGKTAFDISIDNGNE 103

Query: 547 NVVRLL 552
           ++  +L
Sbjct: 104 DLAEIL 109

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 74.9 bits (185), Expect = 1e-16
 Identities = 32/150 (21%), Positives = 58/150 (38%), Gaps = 40/150 (26%)

Query: 325 AAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKD 384
            +          L+  G+ + +      K +  AA+    +  +I + A+ + V A  K+
Sbjct: 1   GSSHHHHHHSSGLVPRGSHMGS---DLGKKLLEAARAGQDDEVRILM-ANGADVAAKDKN 56

Query: 385 GNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAG 444
           G+T                                    PL LAA  GH  VV++L++AG
Sbjct: 57  GST------------------------------------PLHLAARNGHLEVVKLLLEAG 80

Query: 445 ASCTDENKTGFTAVHLAAQNGHNQVLEEMR 474
           A    ++K G TA  ++  NG+  + E ++
Sbjct: 81  ADVXAQDKFGKTAFDISIDNGNEDLAEILQ 110

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 72.2 bits (178), Expect = 1e-15
 Identities = 29/86 (33%), Positives = 41/86 (47%), Gaps = 1/86 (1%)

Query: 319 QTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLV 378
              L  AA AGQ    ++L+  GA + A D  G  P+H+AA+N   EV +  L    + V
Sbjct: 25  GKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVK-LLLEAGADV 83

Query: 379 TATTKDGNTCAHIAAMQGSVGVIEEL 404
            A  K G T   I+   G+  + E L
Sbjct: 84  XAQDKFGKTAFDISIDNGNEDLAEIL 109

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 71.8 bits (177), Expect = 1e-15
 Identities = 31/130 (23%), Positives = 51/130 (39%), Gaps = 24/130 (18%)

Query: 77  AAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVVDLLIQFVQNISQEKVLE 136
            + + +      L+  G             L  A+R  + + V +L+    ++       
Sbjct: 1   GSSHHHHHHSSGLVPRGSH---MGSDLGKKLLEAARAGQDDEVRILMANGADV------- 50

Query: 137 YVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGADVSLQTKQNHETAFHY 196
              + +++G++ LH A +    E            VKLLLEAGADV  Q K   +TAF  
Sbjct: 51  --AAKDKNGSTPLHLAARNGHLE-----------VVKLLLEAGADVXAQDK-FGKTAFDI 96

Query: 197 CAVAGNNDVL 206
               GN D+ 
Sbjct: 97  SIDNGNEDLA 106

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 70.7 bits (174), Expect = 4e-15
 Identities = 29/109 (26%), Positives = 50/109 (45%), Gaps = 12/109 (11%)

Query: 55  MLLKSGAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNC 114
            L+  G+       D    +  AA+ G    +++L+ +G D   K+K G TPLHLA+RN 
Sbjct: 12  GLVPRGSHMG---SDLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNG 68

Query: 115 KAEVVDLLIQFVQNISQEKVLEYVNSVNEDGASALHYACQVTKAELIPI 163
             EVV LL++   ++  +         ++ G +A   +      +L  I
Sbjct: 69  HLEVVKLLLEAGADVXAQ---------DKFGKTAFDISIDNGNEDLAEI 108

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 68.0 bits (167), Expect = 3e-14
 Identities = 31/116 (26%), Positives = 52/116 (44%), Gaps = 8/116 (6%)

Query: 392 AAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDEN 451
            +          L+   R   + +         L  AA  G  + VR+L+  GA    ++
Sbjct: 1   GSSHHHHHHSSGLV--PRGSHMGSDLG----KKLLEAARAGQDDEVRILMANGADVAAKD 54

Query: 452 KTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSK-KLGVTALHVAAYFGQADTVREL 506
           K G T +HLAA+NGH +V++ +  + A +V ++ K G TA  ++   G  D    L
Sbjct: 55  KNGSTPLHLAARNGHLEVVKLLLEAGA-DVXAQDKFGKTAFDISIDNGNEDLAEIL 109

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 64.5 bits (158), Expect = 4e-13
 Identities = 32/106 (30%), Positives = 48/106 (45%), Gaps = 17/106 (16%)

Query: 461 AAQNGHNQVLEEMRSSKALNVYSKKLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPT 520
            + + H+     +    + ++ S       L  AA  GQ D VR L+++           
Sbjct: 1   GSSHHHHHHSSGLVPRGS-HMGSD--LGKKLLEAARAGQDDEVRILMAN----------- 46

Query: 521 GASFLGELGSESGMTPLHLAAYSGNENVVRLLLNSAGVQVDAQTQE 566
           GA        ++G TPLHLAA +G+  VV+LLL  AG  V AQ + 
Sbjct: 47  GADV--AAKDKNGSTPLHLAARNGHLEVVKLLL-EAGADVXAQDKF 89

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 63.7 bits (156), Expect = 1e-12
 Identities = 23/107 (21%), Positives = 46/107 (42%), Gaps = 10/107 (9%)

Query: 171 TVKLLLEAGADVSLQTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGW 230
               L+  G+ +      +        A AG +D +  ++    G ++      +   G 
Sbjct: 9   HSSGLVPRGSHMG----SDLGKKLLEAARAGQDDEVRILMAN--GADV----AAKDKNGS 58

Query: 231 TPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKV 277
           TPL +A   GH+E+V  +L   A V   D+ G++A  ++ ++G   +
Sbjct: 59  TPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISIDNGNEDL 105

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 61.8 bits (151), Expect = 5e-12
 Identities = 22/68 (32%), Positives = 40/68 (58%)

Query: 55  MLLKSGAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNC 114
           +L+ +GA       +G TP+H AA+ G+L  ++LLLE G D   ++K G+T   ++  N 
Sbjct: 42  ILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISIDNG 101

Query: 115 KAEVVDLL 122
             ++ ++L
Sbjct: 102 NEDLAEIL 109

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 80.1 bits (199), Expect = 1e-18
 Identities = 45/112 (40%), Positives = 64/112 (57%), Gaps = 20/112 (17%)

Query: 69  DGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVVDLLIQFVQN 128
           +G+TP+H AA+ G+L  ++LLLE G D   K+K G TPLHLA+RN   EVV LL++   +
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60

Query: 129 ISQEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGA 180
           +         N+ +++G + LH A +    E            VKLLLEAGA
Sbjct: 61  V---------NAKDKNGRTPLHLAARNGHLE-----------VVKLLLEAGA 92

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 78.9 bits (196), Expect = 3e-18
 Identities = 39/88 (44%), Positives = 57/88 (64%), Gaps = 2/88 (2%)

Query: 423 TPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVY 482
           TPL LAA  GH  VV++L++AGA    ++K G T +HLAA+NGH +V++ +  + A +V 
Sbjct: 4   TPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA-DVN 62

Query: 483 SK-KLGVTALHVAAYFGQADTVRELLSH 509
           +K K G T LH+AA  G  + V+ LL  
Sbjct: 63  AKDKNGRTPLHLAARNGHLEVVKLLLEA 90

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 78.6 bits (195), Expect = 4e-18
 Identities = 38/86 (44%), Positives = 55/86 (63%), Gaps = 1/86 (1%)

Query: 319 QTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLV 378
           +TPLHLAA  G L+V KLLL+ GA ++A D  G+ P+H+AA+N   EV ++ L    + V
Sbjct: 3   RTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLL-EAGADV 61

Query: 379 TATTKDGNTCAHIAAMQGSVGVIEEL 404
            A  K+G T  H+AA  G + V++ L
Sbjct: 62  NAKDKNGRTPLHLAARNGHLEVVKLL 87

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 73.5 bits (182), Expect = 2e-16
 Identities = 35/69 (50%), Positives = 48/69 (69%)

Query: 55  MLLKSGAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNC 114
           +LL++GA  N    +G+TP+H AA+ G+L  ++LLLE G D   K+K G TPLHLA+RN 
Sbjct: 20  LLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNG 79

Query: 115 KAEVVDLLI 123
             EVV LL+
Sbjct: 80  HLEVVKLLL 88

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 72.4 bits (179), Expect = 5e-16
 Identities = 41/114 (35%), Positives = 58/114 (50%), Gaps = 23/114 (20%)

Query: 229 GWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVSSGKSLKHSVM 288
           G TPL +A   GH+E+V  +L   A V+  D+ GR+ LHLAA +G+L+V           
Sbjct: 2   GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVK--------- 52

Query: 289 SFRLPPHNIIPNGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGA 342
                         L+ +  A ++      +TPLHLAA  G L+V KLLL+ GA
Sbjct: 53  -------------LLL-EAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 71.6 bits (177), Expect = 1e-15
 Identities = 42/105 (40%), Positives = 59/105 (56%), Gaps = 16/105 (15%)

Query: 454 GFTAVHLAAQNGHNQVLEEMRSSKALNVYSK-KLGVTALHVAAYFGQADTVRELLSHVPG 512
           G T +HLAA+NGH +V++ +  + A +V +K K G T LH+AA  G  + V+ LL     
Sbjct: 2   GRTPLHLAARNGHLEVVKLLLEAGA-DVNAKDKNGRTPLHLAARNGHLEVVKLLLEA--- 57

Query: 513 TVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVRLLLNSAG 557
                   GA        ++G TPLHLAA +G+  VV+LLL  AG
Sbjct: 58  --------GADV--NAKDKNGRTPLHLAARNGHLEVVKLLL-EAG 91

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 68.9 bits (170), Expect = 8e-15
 Identities = 40/115 (34%), Positives = 60/115 (52%), Gaps = 25/115 (21%)

Query: 262 GRSALHLAAEHGYLKVSSGKSLKHSVMSFRLPPHNIIPNGFLVHDHAAVIDILTLRKQTP 321
           GR+ LHLAA +G+L+V                         L+ +  A ++      +TP
Sbjct: 2   GRTPLHLAARNGHLEVVK----------------------LLL-EAGADVNAKDKNGRTP 38

Query: 322 LHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLR--AH 374
           LHLAA  G L+V KLLL+ GA ++A D  G+ P+H+AA+N   EV ++ L   A+
Sbjct: 39  LHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAY 93

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 63.5 bits (156), Expect = 7e-13
 Identities = 35/89 (39%), Positives = 59/89 (66%), Gaps = 5/89 (5%)

Query: 384 DGNTCAHIAAMQGSVGVIEELMKFDRSGV-ISARNRVTEATPLQLAAEGGHANVVRVLVK 442
           +G T  H+AA  G + V++ L++   +G  ++A+++    TPL LAA  GH  VV++L++
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLE---AGADVNAKDK-NGRTPLHLAARNGHLEVVKLLLE 56

Query: 443 AGASCTDENKTGFTAVHLAAQNGHNQVLE 471
           AGA    ++K G T +HLAA+NGH +V++
Sbjct: 57  AGADVNAKDKNGRTPLHLAARNGHLEVVK 85

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 60.8 bits (149), Expect = 5e-12
 Identities = 39/134 (29%), Positives = 54/134 (40%), Gaps = 51/134 (38%)

Query: 144 DGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGADVSLQTKQNHETAFHYCAVAGNN 203
           +G + LH A +               + VKLLLEAGADV                     
Sbjct: 1   NGRTPLHLAAR-----------NGHLEVVKLLLEAGADV--------------------- 28

Query: 204 DVLTGMLEQMSGTEISKALNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGR 263
                              N +   G TPL +A   GH+E+V  +L   A V+  D+ GR
Sbjct: 29  -------------------NAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGR 69

Query: 264 SALHLAAEHGYLKV 277
           + LHLAA +G+L+V
Sbjct: 70  TPLHLAARNGHLEV 83

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 58.9 bits (144), Expect = 3e-11
 Identities = 30/78 (38%), Positives = 40/78 (51%), Gaps = 14/78 (17%)

Query: 487 GVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNE 546
           G T LH+AA  G  + V+ LL             GA        ++G TPLHLAA +G+ 
Sbjct: 2   GRTPLHLAARNGHLEVVKLLLEA-----------GADV--NAKDKNGRTPLHLAARNGHL 48

Query: 547 NVVRLLLNSAGVQVDAQT 564
            VV+LLL  AG  V+A+ 
Sbjct: 49  EVVKLLL-EAGADVNAKD 65

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 52.0 bits (126), Expect = 9e-09
 Identities = 36/101 (35%), Positives = 53/101 (52%), Gaps = 32/101 (31%)

Query: 12 TPLHIAAR------VKDGDRCALMLLKSGAGPNLTNIAARVKDGDRCALM---------- 55
          TPLH+AAR      VK       +LL++GA     ++ A+ K+G R  L           
Sbjct: 4  TPLHLAARNGHLEVVK-------LLLEAGA-----DVNAKDKNG-RTPLHLAARNGHLEV 50

Query: 56 ---LLKSGAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDG 93
             LL++GA  N    +G+TP+H AA+ G+L  ++LLLE G
Sbjct: 51 VKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAG 91

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 41.2 bits (98), Expect = 5e-05
 Identities = 18/33 (54%), Positives = 24/33 (72%), Gaps = 1/33 (3%)

Query: 532 SGMTPLHLAAYSGNENVVRLLLNSAGVQVDAQT 564
           +G TPLHLAA +G+  VV+LLL  AG  V+A+ 
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLL-EAGADVNAKD 32

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 70.8 bits (173), Expect = 9e-14
 Identities = 29/124 (23%), Positives = 43/124 (34%), Gaps = 24/124 (19%)

Query: 5   NSGKLRETPLHIAARVKDGDRCALMLLKSGAGPNLTNIAARVKDGDRCALMLLKSGAGPN 64
           N  +  ET LH+A R  D     ++                          L+++    +
Sbjct: 164 NGHEPDETALHLAVRSVDRTSLHIVDF------------------------LVQNSGNLD 199

Query: 65  LTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVVDLLIQ 124
             T  G T +H      N   L+LLL         N+ GETPL +A R       +LL Q
Sbjct: 200 KQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQ 259

Query: 125 FVQN 128
            +  
Sbjct: 260 ALSG 263

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 70.8 bits (173), Expect = 1e-13
 Identities = 22/128 (17%), Positives = 42/128 (32%), Gaps = 20/128 (15%)

Query: 246 NTMLNNHARVDVFDQEGRSALHLAAEHGYLKVSSGKSLKHSVMSFRLPPHNIIPNGFLVH 305
              L     +    +   +ALHLA                            +     + 
Sbjct: 153 GVDLTEKIPLANGHEPDETALHLAVRSVD--------------------RTSLHIVDFLV 192

Query: 306 DHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPE 365
            ++  +D  T +  T LH        +  KLLL   ASI+  ++ G+ P+ +A +     
Sbjct: 193 QNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEH 252

Query: 366 VAQIFLRA 373
             ++  +A
Sbjct: 253 CEELLTQA 260

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 56.5 bits (136), Expect = 6e-09
 Identities = 27/113 (23%), Positives = 43/113 (38%), Gaps = 18/113 (15%)

Query: 103 GETPLHLASRNCKAEVVDLLIQFVQNISQEKVLEYVNSVNEDGASALHYACQVTKAELIP 162
            ET LHLA R+     + ++   VQN         ++     G++ALHY C    AE   
Sbjct: 169 DETALHLAVRSVDRTSLHIVDFLVQNSGN------LDKQTGKGSTALHYCCLTDNAEC-- 220

Query: 163 ITSKEDQKTVKLLLEAGADVSLQTKQNHETAFHYCAVAGNNDVLTGMLEQMSG 215
                    +KLLL   A + +  +   ET         +      + + +SG
Sbjct: 221 ---------LKLLLRGKASIEIANESG-ETPLDIAKRLKHEHCEELLTQALSG 263

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 55.8 bits (134), Expect = 1e-08
 Identities = 24/115 (20%), Positives = 46/115 (40%), Gaps = 8/115 (6%)

Query: 165 SKEDQKTVKLLLEAGADVSLQ-----TKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEIS 219
              D   +      G D++ +       +  ETA H  AV   +     +++ +     S
Sbjct: 139 KTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHL-AVRSVDRTSLHIVDFLVQN--S 195

Query: 220 KALNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGY 274
             L+KQT  G T L   C   + E +  +L   A +++ ++ G + L +A    +
Sbjct: 196 GNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKH 250

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 54.6 bits (131), Expect = 3e-08
 Identities = 20/99 (20%), Positives = 39/99 (39%), Gaps = 5/99 (5%)

Query: 347 TDDQGQKPIHVAAQNNFPEVAQI--FLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIEEL 404
             +  +  +H+A ++       I  FL  +   +   T  G+T  H   +  +   ++ L
Sbjct: 165 GHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLL 224

Query: 405 MKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKA 443
           ++      I   N   E TPL +A    H +   +L +A
Sbjct: 225 LR--GKASIEIANESGE-TPLDIAKRLKHEHCEELLTQA 260

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 52.3 bits (125), Expect = 1e-07
 Identities = 15/98 (15%), Positives = 37/98 (37%)

Query: 381 TTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVL 440
             +   T  H+A        +  +    ++     +     +T L       +A  +++L
Sbjct: 165 GHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLL 224

Query: 441 VKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKA 478
           ++  AS    N++G T + +A +  H    E +  + +
Sbjct: 225 LRGKASIEIANESGETPLDIAKRLKHEHCEELLTQALS 262

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 51.5 bits (123), Expect = 2e-07
 Identities = 33/153 (21%), Positives = 55/153 (35%), Gaps = 25/153 (16%)

Query: 416 RNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKT---------GFTAVHLAAQNG- 465
           +     A  L    E      +  L++A A   D  +            TA+HLA ++  
Sbjct: 122 KKHADTAAKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVD 181

Query: 466 --HNQVLEEMRSSKALNVYSKKLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGAS 523
                +++ +  +          G TALH       A+ ++ LL              AS
Sbjct: 182 RTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRG-----------KAS 230

Query: 524 FLGELGSESGMTPLHLAAYSGNENVVRLLLNSA 556
              E+ +ESG TPL +A    +E+   LL  + 
Sbjct: 231 I--EIANESGETPLDIAKRLKHEHCEELLTQAL 261

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 65.4 bits (159), Expect = 7e-12
 Identities = 26/138 (18%), Positives = 48/138 (34%), Gaps = 17/138 (12%)

Query: 8   KLRETPLHIAARVKDGDRCALM-LLKSGAGPNLTNIAARVKDGDRCAL------------ 54
           +    P  +   + + D  +++    +G            +  +   L            
Sbjct: 147 RCTPEPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASL 206

Query: 55  ----MLLKSGAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLA 110
                ++++G   +    DG T +H AA Y     L+LLL+        N+ GET L +A
Sbjct: 207 PLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIA 266

Query: 111 SRNCKAEVVDLLIQFVQN 128
            +    E  +LL Q    
Sbjct: 267 RKKHHKECEELLEQAQAG 284

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 62.3 bits (151), Expect = 8e-11
 Identities = 23/125 (18%), Positives = 40/125 (32%), Gaps = 20/125 (16%)

Query: 249 LNNHARVDVFDQEGRSALHLAAEHGYLKVSSGKSLKHSVMSFRLPPHNIIPNGFLVHDHA 308
                            LHLA +              +  S  L         F++  + 
Sbjct: 177 FGQPLPGPDAQAPEELVLHLAVKVA------------NQASLPLVD-------FIIQ-NG 216

Query: 309 AVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQ 368
             +D       T LH AA   Q    KLLL   A +   ++ G+  + +A + +  E  +
Sbjct: 217 GHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEE 276

Query: 369 IFLRA 373
           +  +A
Sbjct: 277 LLEQA 281

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 54.2 bits (130), Expect = 3e-08
 Identities = 33/149 (22%), Positives = 55/149 (36%), Gaps = 31/149 (20%)

Query: 73  PVHAAAKYGNLVTLQLLLEDGGDPMYKNKI------GETPLHLASRNCKA---EVVDLLI 123
            +  A    +L+++     +G D              E  LHLA +        +VD +I
Sbjct: 154 RLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFII 213

Query: 124 QFVQNISQEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGADVS 183
           Q   +         +++   DG +ALHYA    + +            +KLLL+  A V 
Sbjct: 214 QNGGH---------LDAKAADGNTALHYAALYNQPDC-----------LKLLLKGRALVG 253

Query: 184 LQTKQNHETAFHYCAVAGNNDVLTGMLEQ 212
               +  ETA    A   ++     +LEQ
Sbjct: 254 T-VNEAGETALD-IARKKHHKECEELLEQ 280

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 51.9 bits (124), Expect = 2e-07
 Identities = 21/117 (17%), Positives = 39/117 (33%), Gaps = 12/117 (10%)

Query: 165 SKEDQKTVKLLLEAGADVSLQTKQNH-----ETAFHYCAVAGNNDVLTGMLEQ--MSGTE 217
              D  +V      G D              E   H  AV   N     +++    +G  
Sbjct: 160 CNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLH-LAVKVANQASLPLVDFIIQNGGH 218

Query: 218 ISKALNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGY 274
           +    + + + G T L  A      + +  +L   A V   ++ G +AL +A +  +
Sbjct: 219 L----DAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHH 271

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 46.9 bits (111), Expect = 9e-06
 Identities = 20/98 (20%), Positives = 43/98 (43%), Gaps = 6/98 (6%)

Query: 384 DGNTCAHIAAMQG---SVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVL 440
                 H+A       S+ +++ +++    G + A+      T L  AA     + +++L
Sbjct: 189 PEELVLHLAVKVANQASLPLVDFIIQN--GGHLDAKA-ADGNTALHYAALYNQPDCLKLL 245

Query: 441 VKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKA 478
           +K  A     N+ G TA+ +A +  H +  E +  ++A
Sbjct: 246 LKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQA 283

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 43.1 bits (101), Expect = 2e-04
 Identities = 23/114 (20%), Positives = 40/114 (35%), Gaps = 16/114 (14%)

Query: 446 SCTDENKTGFTAVHLAAQNGHN---QVLEEMRSSKALNVYSKKLGVTALHVAAYFGQADT 502
              D        +HLA +  +     +++ +  +          G TALH AA + Q D 
Sbjct: 182 PGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDC 241

Query: 503 VRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVRLLLNSA 556
           ++ LL              A       +E+G T L +A    ++    LL  + 
Sbjct: 242 LKLLLKG-----------RALV--GTVNEAGETALDIARKKHHKECEELLEQAQ 282

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 62.9 bits (152), Expect = 9e-11
 Identities = 25/95 (26%), Positives = 40/95 (42%), Gaps = 2/95 (2%)

Query: 317 RKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPS 376
              TPL  A  A  L  C+ LL  GA+++  D  G+ P+H A       +A +FL+    
Sbjct: 234 DNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGAD 293

Query: 377 LVTATTKDGNTCAHIAAMQGSVGVIEELMKFDRSG 411
            + A   +G     IA    +   I  L++  +  
Sbjct: 294 -LGARDSEGRDPLTIAMETANAD-IVTLLRLAKMR 326

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 59.4 bits (143), Expect = 1e-09
 Identities = 27/159 (16%), Positives = 50/159 (31%), Gaps = 25/159 (15%)

Query: 217 EISKALNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVF--DQEGRSALHLAAEHGY 274
           E           G      + +   +  +   L + A V+     Q+  + L  A     
Sbjct: 188 EPPSEDLGSLHPGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANS 247

Query: 275 LKVSSGKSLKHSVMSFRLPPHNIIPNGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVC 334
           L                          FL+  + A ++      + PLH A   G   + 
Sbjct: 248 LLACE----------------------FLLQ-NGANVNQADSAGRGPLHHATILGHTGLA 284

Query: 335 KLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRA 373
            L L  GA + A D +G+ P+ +A +    ++  +   A
Sbjct: 285 CLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLRLA 323

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 59.4 bits (143), Expect = 1e-09
 Identities = 22/70 (31%), Positives = 33/70 (47%)

Query: 55  MLLKSGAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNC 114
            LL++GA  N     G+ P+H A   G+     L L+ G D   ++  G  PL +A    
Sbjct: 253 FLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETA 312

Query: 115 KAEVVDLLIQ 124
            A++V LL  
Sbjct: 313 NADIVTLLRL 322

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 57.1 bits (137), Expect = 6e-09
 Identities = 24/128 (18%), Positives = 45/128 (35%), Gaps = 12/128 (9%)

Query: 37  PNLTNIAARVKDGDRCA-LMLLKSGAGPNLTT--DDGQTPVHAAAKYGNLVTLQLLLEDG 93
           P      A             L  GA  N      D  TP+  A    +L+  + LL++G
Sbjct: 199 PGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNG 258

Query: 94  GDPMYKNKIGETPLHLASRNCKAEVVDLLIQFVQNISQEKVLEYVNSVNEDGASALHYAC 153
            +    +  G  PLH A+      +  L ++   +         + + + +G   L  A 
Sbjct: 259 ANVNQADSAGRGPLHHATILGHTGLACLFLKRGAD---------LGARDSEGRDPLTIAM 309

Query: 154 QVTKAELI 161
           +   A+++
Sbjct: 310 ETANADIV 317

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 54.8 bits (131), Expect = 3e-08
 Identities = 22/134 (16%), Positives = 44/134 (32%), Gaps = 6/134 (4%)

Query: 346 ATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATT--KDGNTCAHIAAMQGSVGVIEE 403
            +   G      +              AH + V      +D  T    A    S+   E 
Sbjct: 195 GSLHPGALLFRASGHPPSLP-TMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEF 253

Query: 404 LMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQ 463
           L++      ++  +      PL  A   GH  +  + +K GA     +  G   + +A +
Sbjct: 254 LLQ--NGANVNQADSAGR-GPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAME 310

Query: 464 NGHNQVLEEMRSSK 477
             +  ++  +R +K
Sbjct: 311 TANADIVTLLRLAK 324

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 42.5 bits (99), Expect = 3e-04
 Identities = 21/86 (24%), Positives = 28/86 (32%)

Query: 422 ATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNV 481
           ATPL  A           L++ GA+    +  G   +H A   GH  +        A   
Sbjct: 236 ATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLG 295

Query: 482 YSKKLGVTALHVAAYFGQADTVRELL 507
                G   L +A     AD V  L 
Sbjct: 296 ARDSEGRDPLTIAMETANADIVTLLR 321

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E* Length = 497

 Score = 54.9 bits (132), Expect = 4e-08
 Identities = 28/120 (23%), Positives = 46/120 (38%), Gaps = 24/120 (20%)

Query: 5   NSGKLRETPLHIAARVKDGDRCALMLLKSGAGPNLTNIAARVKDGDRCALMLLKSGAGPN 64
           ++    E  LH+A +V +     L+                          ++++G   +
Sbjct: 166 DAQAPEELVLHLAVKVANQASLPLVDF------------------------IIQNGGHLD 201

Query: 65  LTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVVDLLIQ 124
               DG T +H AA Y     L+LLL+        N+ GET L +A +    E  +LL Q
Sbjct: 202 AKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQ 261

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E* Length = 497

 Score = 44.9 bits (106), Expect = 6e-05
 Identities = 19/83 (22%), Positives = 38/83 (45%), Gaps = 6/83 (7%)

Query: 196 YCAVAGNNDVLTGMLEQMSGTEISKALNKQTS--IGWTPLLIAC---NRGHMELVNTMLN 250
           + A+  N D+L+ +    +G +  + L    +       L +A    N+  + LV+ ++ 
Sbjct: 137 WTAIC-NRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQ 195

Query: 251 NHARVDVFDQEGRSALHLAAEHG 273
           N   +D    +G +ALH AA + 
Sbjct: 196 NGGHLDAKAADGNTALHYAALYN 218

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E* Length = 497

 Score = 44.1 bits (104), Expect = 8e-05
 Identities = 21/98 (21%), Positives = 44/98 (44%), Gaps = 6/98 (6%)

Query: 383 KDGNTCAHIA---AMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRV 439
                  H+A   A Q S+ +++ +++    G + A+      T L  AA     + +++
Sbjct: 169 APEELVLHLAVKVANQASLPLVDFIIQN--GGHLDAKAA-DGNTALHYAALYNQPDCLKL 225

Query: 440 LVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSK 477
           L+K  A     N+ G TA+ +A +  H +  E +  ++
Sbjct: 226 LLKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQ 263

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E* Length = 497

 Score = 42.6 bits (100), Expect = 3e-04
 Identities = 25/109 (22%), Positives = 44/109 (40%), Gaps = 7/109 (6%)

Query: 339 DLGASIDATDDQ--GQKPIHVAAQNNFPEVAQI--FLRAHPSLVTATTKDGNTCAHIAAM 394
           D G  +   D Q   +  +H+A +        +  F+  +   + A   DGNT  H AA+
Sbjct: 157 DFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAAL 216

Query: 395 QGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKA 443
                 ++ L+K     ++   N   E T L +A +  H     +L +A
Sbjct: 217 YNQPDCLKLLLK--GRALVGTVNEAGE-TALDIARKKHHKECEELLEQA 262

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	567
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	100.0
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	100.0
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	100.0
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	100.0
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	100.0
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	100.0
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	100.0
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	100.0
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	100.0
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	100.0
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	100.0
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	100.0
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	100.0
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	100.0
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	100.0
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	100.0
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	100.0
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	100.0
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	100.0
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	100.0
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	100.0
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	100.0
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	100.0
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	100.0
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	100.0
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	100.0
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	100.0
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	100.0
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	100.0
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	100.0
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	100.0
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	100.0
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	100.0
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	100.0
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	100.0
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	100.0
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	100.0
2rfa_A	232	Transient receptor potential cation channel subfa	100.0
2rfa_A	232	Transient receptor potential cation channel subfa	100.0
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	100.0
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	100.0
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	100.0
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	100.0
3hra_A	201	Ankyrin repeat family protein; structural protein;	100.0
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	100.0
2pnn_A	273	Transient receptor potential cation channel subfa	100.0
4gpm_A	169	Engineered protein OR264; de novo protein, structu	100.0
3hra_A	201	Ankyrin repeat family protein; structural protein;	100.0
2etb_A	256	Transient receptor potential cation channel subfam	100.0
2etb_A	256	Transient receptor potential cation channel subfam	100.0
4gpm_A	169	Engineered protein OR264; de novo protein, structu	100.0
2pnn_A	273	Transient receptor potential cation channel subfa	99.98
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.98
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.98
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.97
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.97
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.97
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.97
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.97
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.97
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.97
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.96
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.96
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.96
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.96
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.96
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.96
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.96
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.96
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.96
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.96
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.96
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.96
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.96
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.95
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.95
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.95
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.95
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.95
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.95
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.94
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.94
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.94
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.93
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.93
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.93
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.93
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.92
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.92
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.92
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.91
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.9
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.9
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.9
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.9
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.89
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.89
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.89
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.89
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.88
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.88
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.88
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.88
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.88
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.87
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.87
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.86
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.85
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.84
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.84
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.84
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.83
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.78
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.76
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	81.02

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=2e-66  Score=507.51  Aligned_cols=397  Identities=31%  Similarity=0.437  Sum_probs=312.7

Q ss_pred             hcCCCCCCCCCCCChHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCChhHHHHhcCchhHHHHHHHhhhhhhhhHHhhh
Q psy12891         58 KSGAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVVDLLIQFVQNISQEKVLEY  137 (567)
Q Consensus        58 ~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~~~~~~~~~~~~~  137 (567)
                      +.|++++..+..|+||||+||..|+.++|++|+++|++++..+..|.||||+|+..|+.+++++|++.|++         
T Consensus         2 ~~g~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~---------   72 (437)
T 1n11_A            2 SPGISGGGGGESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAK---------   72 (437)
T ss_dssp             -------------CCHHHHHHHHTCHHHHHHHHHTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCC---------
T ss_pred             CCCCCccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCC---------
Confidence            46899999999999999999999999999999999999999999999999999999999999999999987         


Q ss_pred             hcccccccccHHHHHHHhCCcccccccccccHHHHHHHHHcCCCccccccCCCccHHHHHHhcCCHHHHHHHHHhccCcc
Q psy12891        138 VNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGADVSLQTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTE  217 (567)
Q Consensus       138 ~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~  217 (567)
                      ++.++..|.||||+|+..           ++.+++++|+++|++++..+.. +.||||+|+..|+.+++++|++.+... 
T Consensus        73 ~~~~~~~g~t~L~~A~~~-----------g~~~~v~~Ll~~ga~~~~~~~~-g~t~L~~A~~~g~~~~v~~Ll~~~~~~-  139 (437)
T 1n11_A           73 VNAKAKDDQTPLHCAARI-----------GHTNMVKLLLENNANPNLATTA-GHTPLHIAAREGHVETVLALLEKEASQ-  139 (437)
T ss_dssp             SSCCCTTSCCHHHHHHHH-----------TCHHHHHHHHHHTCCTTCCCTT-CCCHHHHHHHHTCHHHHHHHHHTTCCS-
T ss_pred             CCCCCCCCCCHHHHHHHC-----------CCHHHHHHHHhCCCCCCCCCCC-CCcHHHHHHHcCCHHHHHHHHhCCCCC-
Confidence            788899999999999985           4667799999999999876654 599999999999999999999986653 


Q ss_pred             hhhhhhcCCCCCChHHHHHHhcCcHHHHHHHHhCCCCCCccCCCCCCHHHHHHHcCCeeeeccccccccccccCCCCCCC
Q psy12891        218 ISKALNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVSSGKSLKHSVMSFRLPPHNI  297 (567)
Q Consensus       218 ~~~~~~~~~~~~~~~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (567)
                           +..+..|.||||+|+..|+.+++++|+++|++++..+..|.|||++                             
T Consensus       140 -----~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~-----------------------------  185 (437)
T 1n11_A          140 -----ACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHV-----------------------------  185 (437)
T ss_dssp             -----CCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSCCCHHHH-----------------------------
T ss_pred             -----cCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHH-----------------------------
Confidence                 4567789999999999999999999999999988877666555555                             


Q ss_pred             CCCCccccchhhhhhhhhhcCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCcCCCCHHHHHHHcCCHHHHHHHHHhCCCC
Q psy12891        298 IPNGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSL  377 (567)
Q Consensus       298 ~~~~~ll~~~~~~~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~  377 (567)
                                                 |+..|+.+++++|+++|++++..+..|.||||+|+..++.+++++|++.+.+ 
T Consensus       186 ---------------------------A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-  237 (437)
T 1n11_A          186 ---------------------------AVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGS-  237 (437)
T ss_dssp             ---------------------------HHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC-
T ss_pred             ---------------------------HHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-
Confidence                                       5555667777777777777777777777777777777777777777777665 


Q ss_pred             ccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCccCcCCcH
Q psy12891        378 VTATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTA  457 (567)
Q Consensus       378 ~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~  457 (567)
                      .+..+..|.||||+|+..++.+++++|++.+.+..   ..+..|.||||+|+..|+.+++++|+++|++++.++..|+||
T Consensus       238 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~---~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~  314 (437)
T 1n11_A          238 ANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGN---LGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTP  314 (437)
T ss_dssp             TTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTT---CCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCSSCCCH
T ss_pred             CCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCCC---CCCCCCCCHHHHHHHcCCHHHHHHHHhCCccCCCCCCCCCCH
Confidence            56666777777777777777777777777655432   334467777777777777777777777777777777777777


Q ss_pred             HHHHHHcCcHHHHHHHHhcccccccccccCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcccccccCCCCCCCHH
Q psy12891        458 VHLAAQNGHNQVLEEMRSSKALNVYSKKLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPL  537 (567)
Q Consensus       458 l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l  537 (567)
                      ||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|++++++.             +.+|..|.|||
T Consensus       315 L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~-------------~~~~~~g~t~l  381 (437)
T 1n11_A          315 LHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASP-------------NEVSSDGTTPL  381 (437)
T ss_dssp             HHHHHHSSCSHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCS-------------CCCCSSSCCHH
T ss_pred             HHHHHHcCcHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHCChHHHHHHHHHCcCCC-------------CCCCCCCCCHH
Confidence            77777777777777777777777777777777777777777777777777776654             45567777777


Q ss_pred             HHHHHcCCHHHHHHHHh
Q psy12891        538 HLAAYSGNENVVRLLLN  554 (567)
Q Consensus       538 ~~A~~~~~~~~v~~Ll~  554 (567)
                      ++|.+.|+.+++++|..
T Consensus       382 ~~A~~~g~~~~~~~l~~  398 (437)
T 1n11_A          382 AIAKRLGYISVTDVLKV  398 (437)
T ss_dssp             HHHHHTTCHHHHHHHHH
T ss_pred             HHHHHcCcHHHHHHHHh
Confidence            77777777777777754

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=3.1e-65  Score=499.06  Aligned_cols=391  Identities=30%  Similarity=0.382  Sum_probs=352.5

Q ss_pred             cCCCCCChhhHHhhcCChhHHHHHHhhcCCCCChhhhHhhhcCchHHHHHHHhcCCCCCCCCCCCChHHHHHHHhCCHHH
Q psy12891          6 SGKLRETPLHIAARVKDGDRCALMLLKSGAGPNLTNIAARVKDGDRCALMLLKSGAGPNLTTDDGQTPVHAAAKYGNLVT   85 (567)
Q Consensus         6 ~~~~~~t~L~~A~~~g~~~~v~~~L~~~g~~~~~~~~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~   85 (567)
                      .++.|+||||+||..|+.+.|.                           +|+++|++++.++..|.||||+|+..|+.++
T Consensus        10 ~~~~g~t~L~~Aa~~g~~~~v~---------------------------~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~~   62 (437)
T 1n11_A           10 GGESGLTPLHVASFMGHLPIVK---------------------------NLLQRGASPNVSNVKVETPLHMAARAGHTEV   62 (437)
T ss_dssp             -----CCHHHHHHHHTCHHHHH---------------------------HHHHTTCCSCCSSSCCCCHHHHHHHHTCHHH
T ss_pred             cCCCCCCHHHHHHHCCCHHHHH---------------------------HHHHcCCCCCCCCCCCCCHHHHHHHcCCHHH
Confidence            5788999999999999988443                           5788899999999999999999999999999


Q ss_pred             HHHHHHcCCCCCCCCCCCCChhHHHHhcCchhHHHHHHHhhhhhhhhHHhhhhcccccccccHHHHHHHhCCcccccccc
Q psy12891         86 LQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVVDLLIQFVQNISQEKVLEYVNSVNEDGASALHYACQVTKAELIPITS  165 (567)
Q Consensus        86 v~~Ll~~ga~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~  165 (567)
                      +++|+++|++++.++..|.||||+|+..|+.++|++|+++|++         ++..+..|.|||++|+..          
T Consensus        63 v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~---------~~~~~~~g~t~L~~A~~~----------  123 (437)
T 1n11_A           63 AKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNAN---------PNLATTAGHTPLHIAARE----------  123 (437)
T ss_dssp             HHHHHHHTCCSSCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCC---------TTCCCTTCCCHHHHHHHH----------
T ss_pred             HHHHHhCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhCCCC---------CCCCCCCCCcHHHHHHHc----------
Confidence            9999999999999999999999999999999999999999988         677889999999999984          


Q ss_pred             cccHHHHHHHHHcCCCccccccCCCccHHHHHHhcCCHHHHHHHHHhccCcchhhhhhcCCCCCChHHHHHHhcCcHHHH
Q psy12891        166 KEDQKTVKLLLEAGADVSLQTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIACNRGHMELV  245 (567)
Q Consensus       166 ~~~~~~v~~Ll~~g~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~L~~A~~~~~~~~v  245 (567)
                       ++.+++++|+++|++++..... +.||||+|+..|+.+++++|++.+...      +..+..|.||||+|+..++.+++
T Consensus       124 -g~~~~v~~Ll~~~~~~~~~~~~-g~t~L~~A~~~g~~~~v~~Ll~~g~~~------~~~~~~g~t~L~~A~~~~~~~~v  195 (437)
T 1n11_A          124 -GHVETVLALLEKEASQACMTKK-GFTPLHVAAKYGKVRVAELLLERDAHP------NAAGKNGLTPLHVAVHHNNLDIV  195 (437)
T ss_dssp             -TCHHHHHHHHHTTCCSCCCCTT-SCCHHHHHHHTTCHHHHHHHHHTTCCT------TCCCSSCCCHHHHHHHTTCHHHH
T ss_pred             -CCHHHHHHHHhCCCCCcCCCCC-CCCHHHHHHHcCCHHHHHHHHhCCCCC------CCCCCCCCCHHHHHHHcCCHHHH
Confidence             5667799999999998866554 599999999999999999999987654      56788899999999999999999


Q ss_pred             HHHHhCCCCCCccCCCCCCHHHHHHHcCCeeeeccccccccccccCCCCCCCCCCCccccchhhhhhhhhhcCCCHHHHH
Q psy12891        246 NTMLNNHARVDVFDQEGRSALHLAAEHGYLKVSSGKSLKHSVMSFRLPPHNIIPNGFLVHDHAAVIDILTLRKQTPLHLA  325 (567)
Q Consensus       246 ~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~L~~a  325 (567)
                      ++|+++|++++..+..|                                                        .|||++|
T Consensus       196 ~~Ll~~g~~~~~~~~~g--------------------------------------------------------~t~L~~A  219 (437)
T 1n11_A          196 KLLLPRGGSPHSPAWNG--------------------------------------------------------YTPLHIA  219 (437)
T ss_dssp             HHHGGGTCCSCCCCTTC--------------------------------------------------------CCHHHHH
T ss_pred             HHHHhCCCCCCCcCCCC--------------------------------------------------------CCHHHHH
Confidence            99999999887665444                                                        4566666


Q ss_pred             HHcCcHHHHHHHHHcCCCCCCcCcCCCCHHHHHHHcCCHHHHHHHHHhCCCCccccCCCCCcHHHHHHHcCCHHHHHHHH
Q psy12891        326 AEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIEELM  405 (567)
Q Consensus       326 ~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll  405 (567)
                      +..|+.+++++|+++|++++..+..|.||||+|+..++.+++++|++.+.+ .+..+..|.||||+|+..++.+++++|+
T Consensus       220 ~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~-~~~~~~~g~t~L~~A~~~~~~~~~~~Ll  298 (437)
T 1n11_A          220 AKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQAN-GNLGNKSGLTPLHLVAQEGHVPVADVLI  298 (437)
T ss_dssp             HHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCC-TTCCCTTCCCHHHHHHHHTCHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHH
Confidence            777889999999999999999999999999999999999999999998877 6788899999999999999999999999


Q ss_pred             hcCCCcccccCCCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCccCcCCcHHHHHHHcCcHHHHHHHHhcccccccccc
Q psy12891        406 KFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKK  485 (567)
Q Consensus       406 ~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~  485 (567)
                      +.+.+.   +..+..|.||||+|+..|+.+++++|+++|+++|.++..|+||||+|+..|+.+++++|+++|++++.+|.
T Consensus       299 ~~g~~~---~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~  375 (437)
T 1n11_A          299 KHGVMV---DATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSS  375 (437)
T ss_dssp             HHTCCT---TCCCSSCCCHHHHHHHSSCSHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCS
T ss_pred             hCCccC---CCCCCCCCCHHHHHHHcCcHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHCChHHHHHHHHHCcCCCCCCCC
Confidence            987653   34455799999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCcHHHHHHHcCCHHHHHHHHhcC
Q psy12891        486 LGVTALHVAAYFGQADTVRELLSHV  510 (567)
Q Consensus       486 ~g~t~l~~A~~~~~~~~~~~Ll~~~  510 (567)
                      .|+|||++|+..|+.+++++|....
T Consensus       376 ~g~t~l~~A~~~g~~~~~~~l~~~~  400 (437)
T 1n11_A          376 DGTTPLAIAKRLGYISVTDVLKVVT  400 (437)
T ss_dssp             SSCCHHHHHHHTTCHHHHHHHHHHC
T ss_pred             CCCCHHHHHHHcCcHHHHHHHHhcc
Confidence            9999999999999999999997653

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=100.00  E-value=4e-48  Score=364.09  Aligned_cols=305  Identities=24%  Similarity=0.297  Sum_probs=235.1

Q ss_pred             CCChHHHHHHHhCCHHHHHHHHHcCCCCCCCCC-CCCChhHHHHhcCchhHHHHHHHhhhhhhhhHHhhhhccccccccc
Q psy12891         69 DGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNK-IGETPLHLASRNCKAEVVDLLIQFVQNISQEKVLEYVNSVNEDGAS  147 (567)
Q Consensus        69 ~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~-~g~t~L~~A~~~~~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~t  147 (567)
                      +|.|+||.|++.|++++|++||++|+++|.++. .|+||||+|+..|+.++|++|+++|++         ++.++..+.+
T Consensus        24 ~~~t~L~~Av~~g~~~~V~~LL~~Gadvn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~---------~~~~~~~~~~   94 (337)
T 4g8k_A           24 EDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGAD---------PVLRKKNGAT   94 (337)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCC---------TTCCCTTCCC
T ss_pred             CCChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCcCHHHHHHHcCCHHHHHHHHHcCCc---------hhhhccCCCc
Confidence            578999999999999999999999999998875 589999999999999999999998877         5666667777


Q ss_pred             HHHHHHHhCCcccccccccccHHHHHHHHHcCCCccccccCCCccHHHHHHhcCCHHHHHHHHHhccCcchhhhhhcCCC
Q psy12891        148 ALHYACQVTKAELIPITSKEDQKTVKLLLEAGADVSLQTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTS  227 (567)
Q Consensus       148 ~L~~a~~~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~  227 (567)
                      +++.++..+           ...++..+++.++++                                        +..+.
T Consensus        95 ~~~~~~~~~-----------~~~~~~~~~~~~~~~----------------------------------------~~~d~  123 (337)
T 4g8k_A           95 PFILAAIAG-----------SVKLLKLFLSKGADV----------------------------------------NECDF  123 (337)
T ss_dssp             HHHHHHHHT-----------CHHHHHHHHTTTCCT----------------------------------------TCBCT
T ss_pred             hhHHHHhcc-----------cchhhHHhhhccchh----------------------------------------hhhcc
Confidence            777766532           333455555555444                                        34566


Q ss_pred             CCChHHHHHHhcCcHHHHHHHHhCCCCCCccCCCCCCHHHHHHHcCCeeeeccccccccccccCCCCCCCCCCCccccch
Q psy12891        228 IGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVSSGKSLKHSVMSFRLPPHNIIPNGFLVHDH  307 (567)
Q Consensus       228 ~~~~~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~  307 (567)
                      .|.|||++|+..|+.+++++|+++|++++.......                                            
T Consensus       124 ~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~--------------------------------------------  159 (337)
T 4g8k_A          124 YGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKE--------------------------------------------  159 (337)
T ss_dssp             TCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC---------------------------------------------
T ss_pred             CCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhcccc--------------------------------------------
Confidence            678888888888889999999999988876543211                                            


Q ss_pred             hhhhhhhhhcCCCHHHHHHHcCcHHHHHHHHH-cCCCCCCcCcCCCCHHHHHHHcCCHHHHHHHHHhCCCCccccCCCCC
Q psy12891        308 AAVIDILTLRKQTPLHLAAEAGQLQVCKLLLD-LGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGN  386 (567)
Q Consensus       308 ~~~~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~  386 (567)
                        .....+..|.||||+|+..|+.+++++|++ .|++++..+..|.|+++.++..+..                      
T Consensus       160 --~~~~~~~~g~T~L~~A~~~g~~~~v~~LL~~~gad~n~~d~~g~t~l~~~~~~~~~----------------------  215 (337)
T 4g8k_A          160 --DQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDD----------------------  215 (337)
T ss_dssp             ------CTTCSCCHHHHHHHHTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHHSCT----------------------
T ss_pred             --ccccccCCCCcHHHHHHHCCCHHHHHHHHhccCCCcCccCCCCCcHHHHHHHHcCc----------------------
Confidence              122334567788888888888888888885 4788877777777776654432110                      


Q ss_pred             cHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCccCcCCcHHHHHHHcCc
Q psy12891        387 TCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGH  466 (567)
Q Consensus       387 ~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~  466 (567)
                                                                  .+..+++++|+++|+++|.++..|+||||+|+..|+
T Consensus       216 --------------------------------------------~~~~~i~~lLl~~gad~n~~d~~g~t~L~~a~~~~~  251 (337)
T 4g8k_A          216 --------------------------------------------SDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKH  251 (337)
T ss_dssp             --------------------------------------------TTHHHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTC
T ss_pred             --------------------------------------------ccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhhh
Confidence                                                        012356788899999999999999999999999999


Q ss_pred             HHHHHHHHhc-ccccccccccCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcccccccCCCCCCCHHHHHHHcCC
Q psy12891        467 NQVLEEMRSS-KALNVYSKKLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGN  545 (567)
Q Consensus       467 ~~~v~~Ll~~-~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~  545 (567)
                      .+++++|++. |++++.+|..|+||||+|+..|+.+++++|++++++.                  ++.+||++|+++|+
T Consensus       252 ~~~v~~Ll~~~~~~vn~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAd~------------------n~~~~L~~A~~~~~  313 (337)
T 4g8k_A          252 LGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGAST------------------DCGDLVMTARRNYD  313 (337)
T ss_dssp             HHHHHHHHTSTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHTTSCSS------------------TTCCHHHHHHHTTC
T ss_pred             hHHHHHHHHhcCCcccCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC------------------CCCCHHHHHHHcCC
Confidence            9999999875 7888999999999999999999999999999987643                  34579999999999


Q ss_pred             HHHHHHHHhccCCcccccc
Q psy12891        546 ENVVRLLLNSAGVQVDAQT  564 (567)
Q Consensus       546 ~~~v~~Ll~~~g~~~~~~~  564 (567)
                      .++|++||++ |||||...
T Consensus       314 ~~iv~~Ll~~-GA~~d~~~  331 (337)
T 4g8k_A          314 HSLVKVLLSH-GAKEDFHP  331 (337)
T ss_dssp             HHHHHHHHHT-TCCC----
T ss_pred             HHHHHHHHHC-cCCCCCCC
Confidence            9999999996 99998754

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=100.00  E-value=2e-47  Score=359.38  Aligned_cols=304  Identities=27%  Similarity=0.339  Sum_probs=242.7

Q ss_pred             CCCChhhHHhhcCChhHHHHHHhhcCCCCChhhhHhhhcCchHHHHHHHhcCCCCCCCCC-CCChHHHHHHHhCCHHHHH
Q psy12891          9 LRETPLHIAARVKDGDRCALMLLKSGAGPNLTNIAARVKDGDRCALMLLKSGAGPNLTTD-DGQTPVHAAAKYGNLVTLQ   87 (567)
Q Consensus         9 ~~~t~L~~A~~~g~~~~v~~~L~~~g~~~~~~~~~a~~~~~~~~~~~Ll~~g~~~~~~~~-~g~t~L~~A~~~g~~~~v~   87 (567)
                      .|.||||.||+.|+.++|                           ++|+++|+|+|.++. .|+||||+||..|+.++|+
T Consensus        24 ~~~t~L~~Av~~g~~~~V---------------------------~~LL~~Gadvn~~~~~~g~TpLh~A~~~g~~~iv~   76 (337)
T 4g8k_A           24 EDNHLLIKAVQNEDVDLV---------------------------QQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVE   76 (337)
T ss_dssp             HHHHHHHHHHHTTCHHHH---------------------------HHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHH
T ss_pred             CCChHHHHHHHcCCHHHH---------------------------HHHHHCCCCCCccCCCCCcCHHHHHHHcCCHHHHH
Confidence            467899999999998744                           357888999998875 5999999999999999999


Q ss_pred             HHHHcCCCCCCCCCCCCChhHHHHhcCchhHHHHHHHhhhhhhhhHHhhhhcccccccccHHHHHHHhCCcccccccccc
Q psy12891         88 LLLEDGGDPMYKNKIGETPLHLASRNCKAEVVDLLIQFVQNISQEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKE  167 (567)
Q Consensus        88 ~Ll~~ga~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~  167 (567)
                      +|+++|++++.++..+.++++.++..+...++..+++.+.+         ++..+..|.|||++|+..           +
T Consensus        77 ~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~d~~g~t~l~~A~~~-----------~  136 (337)
T 4g8k_A           77 LLLRHGADPVLRKKNGATPFILAAIAGSVKLLKLFLSKGAD---------VNECDFYGFTAFMEAAVY-----------G  136 (337)
T ss_dssp             HHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHTTTCC---------TTCBCTTCCBHHHHHHHT-----------T
T ss_pred             HHHHcCCchhhhccCCCchhHHHHhcccchhhHHhhhccch---------hhhhccCCCCHHHHHHHc-----------C
Confidence            99999999999999999999999999999999999998877         788899999999999984           5


Q ss_pred             cHHHHHHHHHcCCCccccccCCCccHHHHHHhcCCHHHHHHHHHhccCcchhhhhhcCCCCCChHHHHHHhcCcHHHHHH
Q psy12891        168 DQKTVKLLLEAGADVSLQTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIACNRGHMELVNT  247 (567)
Q Consensus       168 ~~~~v~~Ll~~g~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~L~~A~~~~~~~~v~~  247 (567)
                      +.+++++|+++|++++......                              ......+..|.||||+|+..|+.+++++
T Consensus       137 ~~~~~~~ll~~ga~~~~~~~~~------------------------------~~~~~~~~~g~T~L~~A~~~g~~~~v~~  186 (337)
T 4g8k_A          137 KVKALKFLYKRGANVNLRRKTK------------------------------EDQERLRKGGATALMDAAEKGHVEVLKI  186 (337)
T ss_dssp             CHHHHHHHHHTTCCTTCCCCCC-----------------------------------CTTCSCCHHHHHHHHTCHHHHHH
T ss_pred             cHHHHHHHHHcCCCcchhhccc------------------------------cccccccCCCCcHHHHHHHCCCHHHHHH
Confidence            6677999999999987654321                              0123456679999999999999999999


Q ss_pred             HHh-CCCCCCccCCCCCCHHHHHHHcCCeeeeccccccccccccCCCCCCCCCCCccccchhhhhhhhhhcCCCHHHHHH
Q psy12891        248 MLN-NHARVDVFDQEGRSALHLAAEHGYLKVSSGKSLKHSVMSFRLPPHNIIPNGFLVHDHAAVIDILTLRKQTPLHLAA  326 (567)
Q Consensus       248 Ll~-~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~L~~a~  326 (567)
                      |++ .|++++..+..|.|+++.++..+..                                                   
T Consensus       187 LL~~~gad~n~~d~~g~t~l~~~~~~~~~---------------------------------------------------  215 (337)
T 4g8k_A          187 LLDEMGADVNACDNMGRNALIHALLSSDD---------------------------------------------------  215 (337)
T ss_dssp             HHHHSCCCTTCCCTTSCCHHHHHHHHSCT---------------------------------------------------
T ss_pred             HHhccCCCcCccCCCCCcHHHHHHHHcCc---------------------------------------------------
Confidence            995 6999999999999998877654311                                                   


Q ss_pred             HcCcHHHHHHHHHcCCCCCCcCcCCCCHHHHHHHcCCHHHHHHHHHhCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHh
Q psy12891        327 EAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIEELMK  406 (567)
Q Consensus       327 ~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~  406 (567)
                       .+..+++++|+++|++++.++..|.||||+|+..++.++++.|++.....++.++..|+||||+|+..|+.+++++|++
T Consensus       216 -~~~~~i~~lLl~~gad~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~vn~~d~~G~TpL~~A~~~g~~~iv~~Ll~  294 (337)
T 4g8k_A          216 -SDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCK  294 (337)
T ss_dssp             -TTHHHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHTSTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHT
T ss_pred             -ccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhhhhHHHHHHHHhcCCcccCcCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence             1234688999999999999999999999999999999999999987655566677777766666666666666666666


Q ss_pred             cCCCcccccCCCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCC
Q psy12891        407 FDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTD  449 (567)
Q Consensus       407 ~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~  449 (567)
                      +|++.        ...+|||+|++.|+.++|++|+++||++|.
T Consensus       295 ~GAd~--------n~~~~L~~A~~~~~~~iv~~Ll~~GA~~d~  329 (337)
T 4g8k_A          295 RGAST--------DCGDLVMTARRNYDHSLVKVLLSHGAKEDF  329 (337)
T ss_dssp             TSCSS--------TTCCHHHHHHHTTCHHHHHHHHHTTCCC--
T ss_pred             CCCCC--------CCCCHHHHHHHcCCHHHHHHHHHCcCCCCC
Confidence            55442        123466666666666666666666666554

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=100.00  E-value=2.5e-46  Score=355.38  Aligned_cols=313  Identities=27%  Similarity=0.314  Sum_probs=226.0

Q ss_pred             cCCCCCChhhHHhhcCChhHHHHHHhhcCCCCChhhhHhhhcCchHHHHHHHhcCCCCCCCCCCCChHHHHHHHhCCHHH
Q psy12891          6 SGKLRETPLHIAARVKDGDRCALMLLKSGAGPNLTNIAARVKDGDRCALMLLKSGAGPNLTTDDGQTPVHAAAKYGNLVT   85 (567)
Q Consensus         6 ~~~~~~t~L~~A~~~g~~~~v~~~L~~~g~~~~~~~~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~   85 (567)
                      .++++.|+||.||+.|+.+.|..+|                          .+.|++++.++..|.||||+|+..|+.++
T Consensus        20 ~~~~~~~~L~~A~~~g~~~~v~~ll--------------------------~~~~~~~~~~d~~g~t~L~~A~~~g~~~~   73 (351)
T 3utm_A           20 TGEYKKDELLEAARSGNEEKLMALL--------------------------TPLNVNCHASDGRKSTPLHLAAGYNRVRI   73 (351)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHC--------------------------CTTTTTCCCSSTTCCCHHHHHHHTTCHHH
T ss_pred             eccccchhHHHHHHcCCHHHHHHHH--------------------------HhcCCCcccCCCCCCCHHHHHHHcCCHHH
Confidence            4567889999999999988776633                          34577888899999999999999999999


Q ss_pred             HHHHHHcCCCCCCCCCCCCChhHHHHhcCchhHHHHHHHhhhhhhhhHHhhhhcccccccccHHHHHHHhCCcccccccc
Q psy12891         86 LQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVVDLLIQFVQNISQEKVLEYVNSVNEDGASALHYACQVTKAELIPITS  165 (567)
Q Consensus        86 v~~Ll~~ga~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~  165 (567)
                      |++|+++|++++.++..|.||||+|+..|+.+++++|+++|++         ++..+..|.||||+|+.           
T Consensus        74 v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~---------~~~~~~~g~t~L~~A~~-----------  133 (351)
T 3utm_A           74 VQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGAC---------VNAMDLWQFTPLHEAAS-----------  133 (351)
T ss_dssp             HHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC---------TTCCCTTCCCHHHHHHH-----------
T ss_pred             HHHHHHcCCCCCccCCCCCcHHHHHHHCCCHHHHHHHHHCCCC---------CCCCCCCCCCHHHHHHH-----------
Confidence            9999999999999999999999999999999999999999987         67788999999999998           


Q ss_pred             cccHHHHHHHHHcCCCccccccCCCccHHHHHHhcCCHHHHHHHHHhccCcchhhhhhcCCCCCChHHHHHHhcCcHHHH
Q psy12891        166 KEDQKTVKLLLEAGADVSLQTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIACNRGHMELV  245 (567)
Q Consensus       166 ~~~~~~v~~Ll~~g~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~L~~A~~~~~~~~v  245 (567)
                      .++.+++++|+++|++++..... +.+++++++..+..+.+.+....                  .++..++..++.+.+
T Consensus       134 ~~~~~~v~~Ll~~g~~~~~~~~~-g~~~l~~a~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~  194 (351)
T 3utm_A          134 KNRVEVCSLLLSHGADPTLVNCH-GKSAVDMAPTPELRERLTYEFKG------------------HSLLQAAREADLAKV  194 (351)
T ss_dssp             TTCHHHHHHHHHTTCCTTCCCTT-SCCHHHHCSSHHHHHHHHHHHHH------------------HHHHHHHHTTCHHHH
T ss_pred             cCCHHHHHHHHHcCCCCccccCC-CCcchHHHhhhhhHHHHHhhhcc------------------cHHHHHHHhccHHHH
Confidence            45677799999999999877654 48999999988888877776643                  567888888888888


Q ss_pred             HHHHhCCCCCCccCCCCCCHHHHHHHcCCeeeeccccccccccccCCCCCCCCCCCccccchhhhhhhhhhcCCCHHHHH
Q psy12891        246 NTMLNNHARVDVFDQEGRSALHLAAEHGYLKVSSGKSLKHSVMSFRLPPHNIIPNGFLVHDHAAVIDILTLRKQTPLHLA  325 (567)
Q Consensus       246 ~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~L~~a  325 (567)
                      +.++..+......+..|.||||+|+..++                                                   
T Consensus       195 ~~~l~~~~~~~~~~~~~~t~L~~A~~~~~---------------------------------------------------  223 (351)
T 3utm_A          195 KKTLALEIINFKQPQSHETALHCAVASLH---------------------------------------------------  223 (351)
T ss_dssp             HHHTTTCCTTCCCTTTCCCHHHHHHHCCS---------------------------------------------------
T ss_pred             HHHHHhhcccccCCCCCCCHHHHHHHHhC---------------------------------------------------
Confidence            88887765444344444444444443321                                                   


Q ss_pred             HHcCcHHHHHHHHHcCCCCCCcCcCCCCHHHHHHHcCCHHHHHHHHHhCCCCccccCCCCCcHHHHHHHcCCHHHHHHHH
Q psy12891        326 AEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIEELM  405 (567)
Q Consensus       326 ~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll  405 (567)
                        .+..+++++|+++|++++.++..|.||||+|+..++.+++++|++.+.+.                            
T Consensus       224 --~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~----------------------------  273 (351)
T 3utm_A          224 --PKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKM----------------------------  273 (351)
T ss_dssp             --TTHHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT----------------------------
T ss_pred             --ccHHHHHHHHHHcCCCcCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC----------------------------
Confidence              04577888888888888777766666666665555555555555443321                            


Q ss_pred             hcCCCcccccCCCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCccCcCCcHHHHHHHcCcHHHHHHHHhcc
Q psy12891        406 KFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSK  477 (567)
Q Consensus       406 ~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~  477 (567)
                               +..+..|.||||+|+..|+.+++++|+++|++++..|..|+||+++|    ..+++++|.+.+
T Consensus       274 ---------n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~~~~g~tal~~a----~~~~~~~l~~~~  332 (351)
T 3utm_A          274 ---------NALDSLGQTALHRAALAGHLQTCRLLLSYGSDPSIISLQGFTAAQMG----NEAVQQILSEST  332 (351)
T ss_dssp             ---------TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHS----CHHHHHHHHHC-
T ss_pred             ---------CCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCChhhhh----hHHHHHHHHhcc
Confidence                     11112344555555555555555555555555555555555555554    334455554443

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=3e-44  Score=330.46  Aligned_cols=266  Identities=24%  Similarity=0.250  Sum_probs=238.3

Q ss_pred             CChHHHHHHhcCcHHHHHHHHhCCCCCCcc-CCCCCCHHHHHHHcCCeeeeccccccccccccCCCCCCCCCCCccccch
Q psy12891        229 GWTPLLIACNRGHMELVNTMLNNHARVDVF-DQEGRSALHLAAEHGYLKVSSGKSLKHSVMSFRLPPHNIIPNGFLVHDH  307 (567)
Q Consensus       229 ~~~~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~~~~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~  307 (567)
                      |.+||+.|+..|+.+++++|++.|++++.. +.                                               
T Consensus         5 g~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~-----------------------------------------------   37 (285)
T 1wdy_A            5 DNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEE-----------------------------------------------   37 (285)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTTCCTTCCCTT-----------------------------------------------
T ss_pred             cchHHHHHHHcCCHHHHHHHHHcCCCcccccCC-----------------------------------------------
Confidence            679999999999999999999999988765 33                                               


Q ss_pred             hhhhhhhhhcCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCcCCCCHHHHHHHcCCHHHHHHHHHhCCCCccccCCCCCc
Q psy12891        308 AAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNT  387 (567)
Q Consensus       308 ~~~~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~  387 (567)
                               .|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..++.+++++|++.+.+ ++..+..|.|
T Consensus        38 ---------~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t  107 (285)
T 1wdy_A           38 ---------GGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGAD-VNECDFYGFT  107 (285)
T ss_dssp             ---------TCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC-TTCBCTTCCB
T ss_pred             ---------CCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCccCcccCC
Confidence                     345677777778889999999999999999999999999999999999999999998877 6778889999


Q ss_pred             HHHHHHHcCCHHHHHHHHhcCCCcccccCC-------CCCCCCHHHHHHHcCcHHHHHHHHHc-CCCCCCccCcCCcHHH
Q psy12891        388 CAHIAAMQGSVGVIEELMKFDRSGVISARN-------RVTEATPLQLAAEGGHANVVRVLVKA-GASCTDENKTGFTAVH  459 (567)
Q Consensus       388 ~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~-------~~~~~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~l~  459 (567)
                      |||+|+..++.+++++|++.+.+.......       +..|.||||+|+..|+.+++++|++. |++++..+..|+||||
T Consensus       108 ~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~  187 (285)
T 1wdy_A          108 AFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALI  187 (285)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHH
T ss_pred             HHHHHHHhCCHHHHHHHHHhCCCcccccccHHHHHhhccCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCHHH
Confidence            999999999999999999988765443222       55789999999999999999999997 9999999999999999


Q ss_pred             HHHHcCc----HHHHHHHHhcccccccccccCCcHHHHHHHcCCHHHHHHHHh-cCCCCCCCCCCCCcccccccCCCCCC
Q psy12891        460 LAAQNGH----NQVLEEMRSSKALNVYSKKLGVTALHVAAYFGQADTVRELLS-HVPGTVKSDPPTGASFLGELGSESGM  534 (567)
Q Consensus       460 ~A~~~~~----~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~-~~~~~~~~~~~~~~~~~~~~~~~~g~  534 (567)
                      +|+..++    .+++++|+++|++++.+|..|+||||+|+..|+.+++++|++ .+.+.             +.+|..|.
T Consensus       188 ~a~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~-------------~~~~~~g~  254 (285)
T 1wdy_A          188 HALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEI-------------NDTDSDGK  254 (285)
T ss_dssp             HHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHHSSSCCT-------------TCCCTTSC
T ss_pred             HHHHccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhccCCCc-------------cccCCCCC
Confidence            9999999    999999999999999999999999999999999999999999 44432             56688999


Q ss_pred             CHHHHHHHcCCHHHHHHHHhccCCccccccc
Q psy12891        535 TPLHLAAYSGNENVVRLLLNSAGVQVDAQTQ  565 (567)
Q Consensus       535 t~l~~A~~~~~~~~v~~Ll~~~g~~~~~~~~  565 (567)
                      ||||+|++.|+.+++++|+++ |++|+++|.
T Consensus       255 t~l~~A~~~~~~~i~~~Ll~~-Ga~~~~~d~  284 (285)
T 1wdy_A          255 TALLLAVELKLKKIAELLCKR-GASTDCGDL  284 (285)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHH-SSCSCCSSC
T ss_pred             cHHHHHHHcCcHHHHHHHHHc-CCCCCcccc
Confidence            999999999999999999997 999999874

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=100.00  E-value=1.6e-43  Score=336.07  Aligned_cols=308  Identities=27%  Similarity=0.366  Sum_probs=272.4

Q ss_pred             CccHHHHHHhcCCHHHHHHHHHhccCcchhhhhhcCCCCCChHHHHHHhcCcHHHHHHHHhCCCCCCccCCCCCCHHHHH
Q psy12891        190 HETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLA  269 (567)
Q Consensus       190 ~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a  269 (567)
                      +.++|+.|+..|+.+.++.++....     ..++.++..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|
T Consensus        24 ~~~~L~~A~~~g~~~~v~~ll~~~~-----~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A   98 (351)
T 3utm_A           24 KKDELLEAARSGNEEKLMALLTPLN-----VNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNA   98 (351)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHCCTTT-----TTCCCSSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHH
T ss_pred             cchhHHHHHHcCCHHHHHHHHHhcC-----CCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHH
Confidence            3789999999999999999987532     22467888999999999999999999999999999999999999999999


Q ss_pred             HHcCCeeeeccccccccccccCCCCCCCCCCCccccchhhhhhhhhhcCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCc
Q psy12891        270 AEHGYLKVSSGKSLKHSVMSFRLPPHNIIPNGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDD  349 (567)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~  349 (567)
                      +..|+.++++                       ++.+.+.+++..+..|.|||++|+..|+.+++++|+++|++++..+.
T Consensus        99 ~~~g~~~iv~-----------------------~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~  155 (351)
T 3utm_A           99 CSYGHYEVTE-----------------------LLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNC  155 (351)
T ss_dssp             HHTTCHHHHH-----------------------HHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT
T ss_pred             HHCCCHHHHH-----------------------HHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccC
Confidence            9999999988                       67777888888899999999999999999999999999999999999


Q ss_pred             CCCCHHHHHHHcCCHHHHHHHHHhCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCCCCHHHHHH
Q psy12891        350 QGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAA  429 (567)
Q Consensus       350 ~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~t~L~~A~  429 (567)
                      .|.+|+++|+..+..+.+.+....             .++..++..+..+.++.++.....   ....+..|.||||+|+
T Consensus       156 ~g~~~l~~a~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~l~~~~~---~~~~~~~~~t~L~~A~  219 (351)
T 3utm_A          156 HGKSAVDMAPTPELRERLTYEFKG-------------HSLLQAAREADLAKVKKTLALEII---NFKQPQSHETALHCAV  219 (351)
T ss_dssp             TSCCHHHHCSSHHHHHHHHHHHHH-------------HHHHHHHHTTCHHHHHHHTTTCCT---TCCCTTTCCCHHHHHH
T ss_pred             CCCcchHHHhhhhhHHHHHhhhcc-------------cHHHHHHHhccHHHHHHHHHhhcc---cccCCCCCCCHHHHHH
Confidence            999999999888777777776643             467788899999999998876533   3334557889999999


Q ss_pred             Hc---CcHHHHHHHHHcCCCCCCccCcCCcHHHHHHHcCcHHHHHHHHhcccccccccccCCcHHHHHHHcCCHHHHHHH
Q psy12891        430 EG---GHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLGVTALHVAAYFGQADTVREL  506 (567)
Q Consensus       430 ~~---~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~L  506 (567)
                      ..   +..+++++|+++|++++.++..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|
T Consensus       220 ~~~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~t~L~~A~~~~~~~~v~~L  299 (351)
T 3utm_A          220 ASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLL  299 (351)
T ss_dssp             HCCSTTHHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHH
T ss_pred             HHhCccHHHHHHHHHHcCCCcCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHH
Confidence            99   668999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhcCCCCCCCCCCCCcccccccCCCCCCCHHHHHHHcCCHHHHHHHHhccCC
Q psy12891        507 LSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVRLLLNSAGV  558 (567)
Q Consensus       507 l~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~g~  558 (567)
                      ++++++.             +..|..|.||+++|    +.+++++|.+....
T Consensus       300 l~~gad~-------------~~~~~~g~tal~~a----~~~~~~~l~~~~~~  334 (351)
T 3utm_A          300 LSYGSDP-------------SIISLQGFTAAQMG----NEAVQQILSESTPM  334 (351)
T ss_dssp             HHTTCCT-------------TCCCTTSCCHHHHS----CHHHHHHHHHC---
T ss_pred             HHcCCCC-------------CCcCCCCCChhhhh----hHHHHHHHHhcccc
Confidence            9998765             56789999999998    78999999986443

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=5.5e-43  Score=322.01  Aligned_cols=259  Identities=27%  Similarity=0.395  Sum_probs=215.9

Q ss_pred             CCCChhhHHhhcCChhHHHHHHhhcCCCCChhhhHhhhcCchHHHHHHHhcCCCCCCC-CCCCChHHHHHHHhCCHHHHH
Q psy12891          9 LRETPLHIAARVKDGDRCALMLLKSGAGPNLTNIAARVKDGDRCALMLLKSGAGPNLT-TDDGQTPVHAAAKYGNLVTLQ   87 (567)
Q Consensus         9 ~~~t~L~~A~~~g~~~~v~~~L~~~g~~~~~~~~~a~~~~~~~~~~~Ll~~g~~~~~~-~~~g~t~L~~A~~~g~~~~v~   87 (567)
                      .|.||||.|++.|+.+.|.                           +|+++|++++.. +..|+||||+|+..|+.++++
T Consensus         4 ~g~~~L~~A~~~g~~~~v~---------------------------~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~   56 (285)
T 1wdy_A            4 EDNHLLIKAVQNEDVDLVQ---------------------------QLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVE   56 (285)
T ss_dssp             HHHHHHHHHHHTTCHHHHH---------------------------HHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHH
T ss_pred             ccchHHHHHHHcCCHHHHH---------------------------HHHHcCCCcccccCCCCCcHHHHHHHcCCHHHHH
Confidence            5789999999999988443                           477888888877 778999999999999999999


Q ss_pred             HHHHcCCCCCCCCCCCCChhHHHHhcCchhHHHHHHHhhhhhhhhHHhhhhcccccccccHHHHHHHhCCcccccccccc
Q psy12891         88 LLLEDGGDPMYKNKIGETPLHLASRNCKAEVVDLLIQFVQNISQEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKE  167 (567)
Q Consensus        88 ~Ll~~ga~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~  167 (567)
                      +|+++|++++.++..|.||||+|+..|+.+++++|+++|++         ++..+..|.|||++|+..           +
T Consensus        57 ~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~---------~~~~~~~g~t~L~~A~~~-----------~  116 (285)
T 1wdy_A           57 LLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGAD---------VNECDFYGFTAFMEAAVY-----------G  116 (285)
T ss_dssp             HHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC---------TTCBCTTCCBHHHHHHHT-----------T
T ss_pred             HHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC---------CCccCcccCCHHHHHHHh-----------C
Confidence            99999999999999999999999999999999999999987         678899999999999984           5


Q ss_pred             cHHHHHHHHHcCCCccccc---------cCCCccHHHHHHhcCCHHHHHHHHHh-ccCcchhhhhhcCCCCCChHHHHHH
Q psy12891        168 DQKTVKLLLEAGADVSLQT---------KQNHETAFHYCAVAGNNDVLTGMLEQ-MSGTEISKALNKQTSIGWTPLLIAC  237 (567)
Q Consensus       168 ~~~~v~~Ll~~g~~~~~~~---------~~~~~~~l~~a~~~~~~~~~~~Ll~~-~~~~~~~~~~~~~~~~~~~~L~~A~  237 (567)
                      +.+++++|+++|++++...         ...+.||||+|+..|+.+++++|++. +..      ++..+..|.||||+|+
T Consensus       117 ~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~------~~~~~~~g~t~l~~a~  190 (285)
T 1wdy_A          117 KVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGAD------VNACDNMGRNALIHAL  190 (285)
T ss_dssp             CHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCC------TTCCCTTSCCHHHHHH
T ss_pred             CHHHHHHHHHhCCCcccccccHHHHHhhccCCCcHHHHHHHcCCHHHHHHHHHhcCCC------CCccCCCCCCHHHHHH
Confidence            6777999999999988763         33457788888888888888888775 333      3556677778888888


Q ss_pred             hcCc----HHHHHHHHhCCCCCCccCCCCCCHHHHHHHcCCeeeeccccccccccccCCCCCCCCCCCccccchhhhhhh
Q psy12891        238 NRGH----MELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVSSGKSLKHSVMSFRLPPHNIIPNGFLVHDHAAVIDI  313 (567)
Q Consensus       238 ~~~~----~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~  313 (567)
                      ..++    .+++++|+++|++++..+..|                                                   
T Consensus       191 ~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g---------------------------------------------------  219 (285)
T 1wdy_A          191 LSSDDSDVEAITHLLLDHGADVNVRGERG---------------------------------------------------  219 (285)
T ss_dssp             HCSCTTTHHHHHHHHHHTTCCSSCCCTTS---------------------------------------------------
T ss_pred             HccccchHHHHHHHHHHcCCCCCCcCCCC---------------------------------------------------
Confidence            7777    777788888777777666554                                                   


Q ss_pred             hhhcCCCHHHHHHHcCcHHHHHHHHH-cCCCCCCcCcCCCCHHHHHHHcCCHHHHHHHHHhCCC
Q psy12891        314 LTLRKQTPLHLAAEAGQLQVCKLLLD-LGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPS  376 (567)
Q Consensus       314 ~~~~~~t~L~~a~~~~~~~~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~  376 (567)
                           .||||+|+..|+.+++++|++ .|++++.++..|.||||+|+..++.+++++|++++++
T Consensus       220 -----~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~~~~g~t~l~~A~~~~~~~i~~~Ll~~Ga~  278 (285)
T 1wdy_A          220 -----KTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGAS  278 (285)
T ss_dssp             -----CCHHHHHHHTTCHHHHHHHHHSSSCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSSC
T ss_pred             -----CcHHHHHHHcCCHHHHHHHHhccCCCccccCCCCCcHHHHHHHcCcHHHHHHHHHcCCC
Confidence                 455556666677888888888 7888888888888999998888888899888888876

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=100.00  E-value=2.8e-43  Score=334.39  Aligned_cols=313  Identities=19%  Similarity=0.176  Sum_probs=223.1

Q ss_pred             ccHHHHHHhcCCHHHHHHHHHhccCcchhhhhhcCCCCCChHHHHHHhcCcHHHHHHHHhCCCCCCccCCCCCCHHHHHH
Q psy12891        191 ETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAA  270 (567)
Q Consensus       191 ~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~  270 (567)
                      ..+|..++..|+.+.++.++++.....          ...+++.-+...|+++++++++..     ..+..|.||||+|+
T Consensus        38 ~~~l~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~~g~t~L~~Aa  102 (373)
T 2fo1_E           38 QHSLLEASYDGYIKRQRNELQHYSLYP----------NPQGYGNGNDFLGDFNHTNLQIPT-----EPEPESPIKLHTEA  102 (373)
T ss_dssp             -----------------------------------------------------------------------CCCHHHHHH
T ss_pred             ccccccccCCccccchhhhhhhhcccc----------CccccCCCCCcccccccccccccc-----CCCCCCccHHHHHh
Confidence            445666667777777777777543221          123455667777888888887654     34677889999998


Q ss_pred             HcCCeeeeccccccccccccCCCCCCCCCCCccccchhhhhhhhh-hcCCCHHHHHHHcCcHHHHHHHH--------HcC
Q psy12891        271 EHGYLKVSSGKSLKHSVMSFRLPPHNIIPNGFLVHDHAAVIDILT-LRKQTPLHLAAEAGQLQVCKLLL--------DLG  341 (567)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~-~~~~t~L~~a~~~~~~~~v~~Ll--------~~g  341 (567)
                      ..+. ++++                       .+.  ...++..+ ..|.||||+|+..|+.+++++|+        +.|
T Consensus       103 ~~~~-~~~~-----------------------~L~--~~~~n~~d~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~g  156 (373)
T 2fo1_E          103 AGSY-AITE-----------------------PIT--RESVNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAG  156 (373)
T ss_dssp             HSSS-CCCS-----------------------CCS--TTTTTTCCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTC
T ss_pred             cCCc-hHHH-----------------------Hhc--cccccccCCcCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHhcC
Confidence            8554 4444                       221  23556666 67899999999999887777665        899


Q ss_pred             CCCCCcCcCCCCHHHHHHHcCCHHHHHHHHHhCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCC
Q psy12891        342 ASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTE  421 (567)
Q Consensus       342 ~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~  421 (567)
                      ++++..|..|.||||+|+..|+.+++++|++.+++ ++..+..|.||||+|+..++.+++++|++.+.........+..|
T Consensus       157 a~vn~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~-~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g  235 (373)
T 2fo1_E          157 ADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGAD-PTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNG  235 (373)
T ss_dssp             CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-SCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTS
T ss_pred             CCCcCCCCCCCCHHHHHHHcChHHHHHHHHHCCCC-CcccCCCCCCHHHHHHHCCCHHHHHHHHhcCccccChhhcCCCC
Confidence            99999999999999999999999999999999887 67889999999999999999999999998763223445556689


Q ss_pred             CCHHHHHHHcC---cHHHHHHHHHcCCCCCC--------ccCcCCcHHHHHHHcCcHHHHHHHHhcc-cccccccccCCc
Q psy12891        422 ATPLQLAAEGG---HANVVRVLVKAGASCTD--------ENKTGFTAVHLAAQNGHNQVLEEMRSSK-ALNVYSKKLGVT  489 (567)
Q Consensus       422 ~t~L~~A~~~~---~~~~v~~Ll~~g~~~~~--------~~~~g~t~l~~A~~~~~~~~v~~Ll~~~-~~~~~~~~~g~t  489 (567)
                      .||||+|+..+   +.+++++|+++|++++.        .+..|.||||+|+..|+.+++++|++.+ ++++.+|..|+|
T Consensus       236 ~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~n~~d~~g~T  315 (373)
T 2fo1_E          236 MTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKT  315 (373)
T ss_dssp             CCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCC
T ss_pred             CCHHHHHHHhCCcchHHHHHHHHHCCCCcccccccccCcccccCCCHHHHHHHhCCHHHHHHHHHhcCCCccCcCCCCCC
Confidence            99999999998   89999999999999986        5678999999999999999999999886 899999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcccccccCCCCCCCHHHHHHHcCCHHHHHHHHhccCCc
Q psy12891        490 ALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVRLLLNSAGVQ  559 (567)
Q Consensus       490 ~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~g~~  559 (567)
                      |||+|+..|+.+++++|++++++.             +.+|..|.|||++|+.+|+.++|++|+++ |++
T Consensus       316 pL~~A~~~g~~~iv~~Ll~~gad~-------------~~~d~~g~t~l~~A~~~g~~~iv~~Ll~~-~a~  371 (373)
T 2fo1_E          316 PIMLAAQEGRIEVVMYLIQQGASV-------------EAVDATDHTARQLAQANNHHNIVDIFDRC-RPE  371 (373)
T ss_dssp             HHHHHHHHTCHHHHHHHHHTTCCS-------------SCCCSSSCCHHHHHHHTTCHHHHHHHHTT-C--
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCCc-------------cCCCCCCCCHHHHHHHcCCHHHHHHHHhc-Ccc
Confidence            999999999999999999998765             56789999999999999999999999986 665

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=100.00  E-value=6e-43  Score=332.12  Aligned_cols=313  Identities=17%  Similarity=0.125  Sum_probs=233.2

Q ss_pred             cccHHHHHHHHHcCCCccccccCCCccHHHHHHhcCCHHHHHHHHHhccCcchhhhhhcCCCCCChHHHHHHhcCcHHHH
Q psy12891        166 KEDQKTVKLLLEAGADVSLQTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIACNRGHMELV  245 (567)
Q Consensus       166 ~~~~~~v~~Ll~~g~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~L~~A~~~~~~~~v  245 (567)
                      .+..+.++.++++...+.+.     .+++.-+...|+.+++++++..           .++..|.||||+|+..+. +++
T Consensus        47 ~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~g~~~~~~~~~~~-----------~~~~~g~t~L~~Aa~~~~-~~~  109 (373)
T 2fo1_E           47 DGYIKRQRNELQHYSLYPNP-----QGYGNGNDFLGDFNHTNLQIPT-----------EPEPESPIKLHTEAAGSY-AIT  109 (373)
T ss_dssp             ---------------------------------------------------------------CCCHHHHHHHSSS-CCC
T ss_pred             CccccchhhhhhhhccccCc-----cccCCCCCcccccccccccccc-----------CCCCCCccHHHHHhcCCc-hHH
Confidence            34455567777666554322     3455667778888888887653           456779999999999664 788


Q ss_pred             HHHHhCCCCCCccC-CCCCCHHHHHHHcCCeeeeccccccccccccCCCCCCCCCCCccccchhhhhhhhhhcCCCHHHH
Q psy12891        246 NTMLNNHARVDVFD-QEGRSALHLAAEHGYLKVSSGKSLKHSVMSFRLPPHNIIPNGFLVHDHAAVIDILTLRKQTPLHL  324 (567)
Q Consensus       246 ~~Ll~~g~~~~~~~-~~~~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~L~~  324 (567)
                      ++|+.  .+++..+ ..|+||||+|+..|+.++++.......               ..+.+.+.+++..+..|.||||+
T Consensus       110 ~~L~~--~~~n~~d~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~---------------~~ll~~ga~vn~~d~~g~TpL~~  172 (373)
T 2fo1_E          110 EPITR--ESVNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEA---------------KECIAAGADVNAMDCDENTPLML  172 (373)
T ss_dssp             SCCST--TTTTTCCCSSCCCHHHHHHCTTCCSCCTTHHHHHH---------------HHHHHTCCCTTCCCTTSCCHHHH
T ss_pred             HHhcc--ccccccCCcCCCCHHHHHHHCCCHHHHHHHHHHHH---------------HHHHhcCCCCcCCCCCCCCHHHH
Confidence            88765  4677777 789999999999999998882110000               01126788899999999999999


Q ss_pred             HHHcCcHHHHHHHHHcCCCCCCcCcCCCCHHHHHHHcCCHHHHHHHHHhCC--CCccccCCCCCcHHHHHHHcC---CHH
Q psy12891        325 AAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHP--SLVTATTKDGNTCAHIAAMQG---SVG  399 (567)
Q Consensus       325 a~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~--~~~~~~~~~~~~~l~~a~~~~---~~~  399 (567)
                      |+..|+.+++++|+++|++++..+..|.||||+|+..++.+++++|++.+.  ..++..+..|.||||+|+..+   +.+
T Consensus       173 A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~  252 (373)
T 2fo1_E          173 AVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVA  252 (373)
T ss_dssp             HHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHH
T ss_pred             HHHcChHHHHHHHHHCCCCCcccCCCCCCHHHHHHHCCCHHHHHHHHhcCccccChhhcCCCCCCHHHHHHHhCCcchHH
Confidence            999999999999999999999999999999999999999999999998762  236778999999999999998   899


Q ss_pred             HHHHHHhcCCCccc-----ccCCCCCCCCHHHHHHHcCcHHHHHHHHHcC-CCCCCccCcCCcHHHHHHHcCcHHHHHHH
Q psy12891        400 VIEELMKFDRSGVI-----SARNRVTEATPLQLAAEGGHANVVRVLVKAG-ASCTDENKTGFTAVHLAAQNGHNQVLEEM  473 (567)
Q Consensus       400 ~~~~ll~~~~~~~~-----~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~t~l~~A~~~~~~~~v~~L  473 (567)
                      ++++|++.+.+...     ....+..|.||||+|+..|+.+++++|+++| ++++.+|..|+||||+|+..|+.+++++|
T Consensus       253 ~v~~Ll~~g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~n~~d~~g~TpL~~A~~~g~~~iv~~L  332 (373)
T 2fo1_E          253 SAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYL  332 (373)
T ss_dssp             HHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHH
T ss_pred             HHHHHHHCCCCcccccccccCcccccCCCHHHHHHHhCCHHHHHHHHHhcCCCccCcCCCCCCHHHHHHHcCCHHHHHHH
Confidence            99999999877543     2235568999999999999999999999876 99999999999999999999999999999


Q ss_pred             HhcccccccccccCCcHHHHHHHcCCHHHHHHHHhcCCC
Q psy12891        474 RSSKALNVYSKKLGVTALHVAAYFGQADTVRELLSHVPG  512 (567)
Q Consensus       474 l~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~  512 (567)
                      +++|++++.+|..|+|||++|+..|+.+++++|++++++
T Consensus       333 l~~gad~~~~d~~g~t~l~~A~~~g~~~iv~~Ll~~~a~  371 (373)
T 2fo1_E          333 IQQGASVEAVDATDHTARQLAQANNHHNIVDIFDRCRPE  371 (373)
T ss_dssp             HHTTCCSSCCCSSSCCHHHHHHHTTCHHHHHHHHTTC--
T ss_pred             HHcCCCccCCCCCCCCHHHHHHHcCCHHHHHHHHhcCcc
Confidence            999999999999999999999999999999999998764

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=100.00  E-value=5.2e-42  Score=312.95  Aligned_cols=231  Identities=20%  Similarity=0.223  Sum_probs=208.4

Q ss_pred             hhhhhcCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCcCCCCHHHHHHHcCCHHHHHHHHHhCCCCccccCCCCCcHHHH
Q psy12891        312 DILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHI  391 (567)
Q Consensus       312 ~~~~~~~~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~  391 (567)
                      +..+..|.||||+|+..|+.+++++|++.|++++..+..|.||||+|+..++.+++++|++.+.+ ++..+..|.||||+
T Consensus        53 ~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~-~~~~~~~g~t~L~~  131 (285)
T 3d9h_A           53 MGDAVSDWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQ-VNGVTADWHTPLFN  131 (285)
T ss_dssp             CSSSCCSCCHHHHHHHTTCHHHHHHHHHTTCCSCEECTTCCCHHHHHHHTTCHHHHHHHHHTTCC-SSCCCTTCCCHHHH
T ss_pred             cCCCccCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCC-CCCCCCCCCCHHHH
Confidence            45677899999999999999999999999999999999999999999999999999999999877 68889999999999


Q ss_pred             HHHcCCHHHHHHHHhcCCCcccccCCCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCccCcCCcHHHHHHHcCcHHHHH
Q psy12891        392 AAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLE  471 (567)
Q Consensus       392 a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~  471 (567)
                      |+..++.+++++|++.+.+...    +..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+.++++
T Consensus       132 A~~~~~~~~v~~Ll~~g~~~~~----~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~  207 (285)
T 3d9h_A          132 ACVSGSWDCVNLLLQHGASVQP----ESDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVK  207 (285)
T ss_dssp             HHHHTCHHHHHHHHHTTCCSSC----SCTTSCHHHHHHHHTCHHHHHHHHHTTCCTTCCBTTTBCHHHHHHHTTCHHHHH
T ss_pred             HHHcCHHHHHHHHHHCCCCCCC----CCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHH
Confidence            9999999999999998876432    235889999999999999999999999999999999999999999999999999


Q ss_pred             HHHhcccccccccccCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcccccccCCCCCCCHHHHHHHcCCHHHHHH
Q psy12891        472 EMRSSKALNVYSKKLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVRL  551 (567)
Q Consensus       472 ~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~  551 (567)
                      +|++.|++++. +..|+||||+|+..++.+++++|++++.+.             +.+|..|.|||++|+  ++.+++++
T Consensus       208 ~Ll~~ga~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~-------------~~~d~~g~t~l~~A~--~~~~~~~~  271 (285)
T 3d9h_A          208 KLLESGADVNQ-GKGQDSPLHAVVRTASEELACLLMDFGADT-------------QAKNAEGKRPVELVP--PESPLAQL  271 (285)
T ss_dssp             HHHHTTCCTTC-CBTTBCHHHHHHHTTCHHHHHHHHHTTCCT-------------TCCCTTSCCGGGGSC--TTSHHHHH
T ss_pred             HHHHCCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-------------CCcCCCCCCHHHHhc--CccHHHHH
Confidence            99999999884 888999999999999999999999997764             677899999999999  56799999


Q ss_pred             HHhccCCccccc
Q psy12891        552 LLNSAGVQVDAQ  563 (567)
Q Consensus       552 Ll~~~g~~~~~~  563 (567)
                      |+++.|+++...
T Consensus       272 Ll~~~~a~l~~~  283 (285)
T 3d9h_A          272 FLEREGASLPKP  283 (285)
T ss_dssp             HHHHC-------
T ss_pred             HHHhhccCCCCC
Confidence            999989988654

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=100.00  E-value=8.9e-41  Score=304.82  Aligned_cols=258  Identities=19%  Similarity=0.259  Sum_probs=204.1

Q ss_pred             CCccHHHHHHhcCCHHHHHHHHHhccCc-----chhhhhhcCCCCCChHHHHHHhcCcHHHHHHHHhCCCCCCccCCCCC
Q psy12891        189 NHETAFHYCAVAGNNDVLTGMLEQMSGT-----EISKALNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGR  263 (567)
Q Consensus       189 ~~~~~l~~a~~~~~~~~~~~Ll~~~~~~-----~~~~~~~~~~~~~~~~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~  263 (567)
                      .+.|++|+|+..|+.+.+..++...+..     -+...++.++..|.||||+|+..|+.+++++|++.|++++..+..|.
T Consensus        14 ~~~~~lH~Aa~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~g~   93 (285)
T 3d9h_A           14 LVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSDWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHV   93 (285)
T ss_dssp             ----------------------------CCSEECCCCTTCSSSCCSCCHHHHHHHTTCHHHHHHHHHTTCCSCEECTTCC
T ss_pred             HHHHHHHHHhhcCCCCCcccCCCCccccccchhhhhCcccCCCccCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCC
Confidence            4589999999999987777776654331     12334577889999999999999999999999999999887766555


Q ss_pred             CHHHHHHHcCCeeeeccccccccccccCCCCCCCCCCCccccchhhhhhhhhhcCCCHHHHHHHcCcHHHHHHHHHcCCC
Q psy12891        264 SALHLAAEHGYLKVSSGKSLKHSVMSFRLPPHNIIPNGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGAS  343 (567)
Q Consensus       264 t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~~g~~  343 (567)
                                                                              ||||+|+..|+.+++++|+++|++
T Consensus        94 --------------------------------------------------------t~L~~A~~~g~~~~v~~Ll~~ga~  117 (285)
T 3d9h_A           94 --------------------------------------------------------SPLHEACLGGHLSCVKILLKHGAQ  117 (285)
T ss_dssp             --------------------------------------------------------CHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred             --------------------------------------------------------CHHHHHHHCCcHHHHHHHHHCCCC
Confidence                                                                    555566667789999999999999


Q ss_pred             CCCcCcCCCCHHHHHHHcCCHHHHHHHHHhCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCCCC
Q psy12891        344 IDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEAT  423 (567)
Q Consensus       344 ~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~t  423 (567)
                      ++..+..|.||||+|+..++.+++++|++.+.+. + .+..|.||||+|+..|+.+++++|++.+.+.   ...+..|.|
T Consensus       118 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~-~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~---~~~d~~g~t  192 (285)
T 3d9h_A          118 VNGVTADWHTPLFNACVSGSWDCVNLLLQHGASV-Q-PESDLASPIHEAARRGHVECVNSLIAYGGNI---DHKISHLGT  192 (285)
T ss_dssp             SSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCS-S-CSCTTSCHHHHHHHHTCHHHHHHHHHTTCCT---TCCBTTTBC
T ss_pred             CCCCCCCCCCHHHHHHHcCHHHHHHHHHHCCCCC-C-CCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC---CCcCCCCCC
Confidence            9999999999999999999999999999998774 3 3455999999999999999999999987663   334557889


Q ss_pred             HHHHHHHcCcHHHHHHHHHcCCCCCCccCcCCcHHHHHHHcCcHHHHHHHHhcccccccccccCCcHHHHHHHcCCHHHH
Q psy12891        424 PLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLGVTALHVAAYFGQADTV  503 (567)
Q Consensus       424 ~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~  503 (567)
                      |||+|+..|+.+++++|+++|++++. +..|.||||+|+..++.+++++|+++|++++.+|..|+||||+|+  ++.+++
T Consensus       193 ~L~~A~~~~~~~~v~~Ll~~ga~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~--~~~~~~  269 (285)
T 3d9h_A          193 PLYLACENQQRACVKKLLESGADVNQ-GKGQDSPLHAVVRTASEELACLLMDFGADTQAKNAEGKRPVELVP--PESPLA  269 (285)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCTTC-CBTTBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCGGGGSC--TTSHHH
T ss_pred             HHHHHHHcCcHHHHHHHHHCCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHhc--CccHHH
Confidence            99999999999999999999999995 889999999999999999999999999999999999999999999  567999


Q ss_pred             HHHHhcC
Q psy12891        504 RELLSHV  510 (567)
Q Consensus       504 ~~Ll~~~  510 (567)
                      ++|+++.
T Consensus       270 ~~Ll~~~  276 (285)
T 3d9h_A          270 QLFLERE  276 (285)
T ss_dssp             HHHHHHC
T ss_pred             HHHHHhh
Confidence            9999983

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=100.00  E-value=1.1e-40  Score=299.20  Aligned_cols=230  Identities=23%  Similarity=0.257  Sum_probs=179.9

Q ss_pred             hhhhhhhcCCCHHHHHHHcC-------------cHHHHHHHHHcCCCCCC-cCcCCCCHHHHHHHcCCHHHHHHHHHhCC
Q psy12891        310 VIDILTLRKQTPLHLAAEAG-------------QLQVCKLLLDLGASIDA-TDDQGQKPIHVAAQNNFPEVAQIFLRAHP  375 (567)
Q Consensus       310 ~~~~~~~~~~t~L~~a~~~~-------------~~~~v~~Ll~~g~~~~~-~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~  375 (567)
                      +++..+..|.||||+|+..|             +.+++++|++.|++++. .+..|.||||+|+..|+.+++++|++.+.
T Consensus         2 dvn~~d~~g~tpL~~A~~~g~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~   81 (253)
T 1yyh_A            2 DVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASA   81 (253)
T ss_dssp             --------------------------------------------------CCCTTSCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred             CCCCCCCCCCcHHHHHHhccccccccchhhcCCChHHHHHHHHccCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCC
Confidence            46778899999999999977             89999999999999965 48999999999999999999999999987


Q ss_pred             CCccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCccCcCC
Q psy12891        376 SLVTATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGF  455 (567)
Q Consensus       376 ~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~  455 (567)
                      + ++..+..|.||||+|+..++.+++++|++.+..  .....+..|.||||+|+..|+.+++++|+++|++++..+..|+
T Consensus        82 ~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~--~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~  158 (253)
T 1yyh_A           82 D-ANIQDNMGRTPLHAAVSADAQGVFQILIRNRAT--DLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGK  158 (253)
T ss_dssp             C-TTCCCTTSCCHHHHHHHHTCHHHHHHHHHSTTS--CTTCCCTTCCCHHHHHHHHTCSSHHHHHHHTTCCTTCBCTTSC
T ss_pred             C-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC--CccccCCCCCcHHHHHHHcChHHHHHHHHHcCCCCCCcCCCCC
Confidence            7 678899999999999999999999999998753  2344456899999999999999999999999999999999999


Q ss_pred             cHHHHHHHcCcHHHHHHHHhcccccccccccCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcccccccCCCCCCC
Q psy12891        456 TAVHLAAQNGHNQVLEEMRSSKALNVYSKKLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMT  535 (567)
Q Consensus       456 t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~g~t  535 (567)
                      ||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|++++++.             +.+|..|.|
T Consensus       159 t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~-------------~~~d~~g~t  225 (253)
T 1yyh_A          159 SALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANR-------------DITDHMDRL  225 (253)
T ss_dssp             BHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-------------TCCCTTCCC
T ss_pred             CHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCc-------------cccccCCCC
Confidence            9999999999999999999999999999999999999999999999999999998765             567899999


Q ss_pred             HHHHHHHcCCHHHHHHHHhc
Q psy12891        536 PLHLAAYSGNENVVRLLLNS  555 (567)
Q Consensus       536 ~l~~A~~~~~~~~v~~Ll~~  555 (567)
                      ||++|+++|+.+|+++|.+.
T Consensus       226 pl~~A~~~g~~~i~~~l~~~  245 (253)
T 1yyh_A          226 PRDIAQERMHHDIVRLLDLE  245 (253)
T ss_dssp             HHHHHHHTTCHHHHHHHHC-
T ss_pred             HHHHHHHcCCHHHHHHHHHH
Confidence            99999999999999999975

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=100.00  E-value=6.4e-40  Score=294.33  Aligned_cols=207  Identities=24%  Similarity=0.227  Sum_probs=183.5

Q ss_pred             cccchhhhhhh-hhhcCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCcCCCCHHHHHHHcCCHHHHHHHHHhCCCCcccc
Q psy12891        303 LVHDHAAVIDI-LTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTAT  381 (567)
Q Consensus       303 ll~~~~~~~~~-~~~~~~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~  381 (567)
                      .+...+.+++. .+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..++.+++++|++.++...+..
T Consensus        41 ~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~  120 (253)
T 1yyh_A           41 DFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDAR  120 (253)
T ss_dssp             -----------CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCC
T ss_pred             HHHHccCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccc
Confidence            44555666544 58899999999999999999999999999999999999999999999999999999999998678889


Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCccCcCCcHHHHH
Q psy12891        382 TKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLA  461 (567)
Q Consensus       382 ~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A  461 (567)
                      +..|.||||+|+..++.+++++|++.+.+.   ...+..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|
T Consensus       121 ~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~---~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A  197 (253)
T 1yyh_A          121 MHDGTTPLILAARLAVEGMLEDLINSHADV---NAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLA  197 (253)
T ss_dssp             CTTCCCHHHHHHHHTCSSHHHHHHHTTCCT---TCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred             CCCCCcHHHHHHHcChHHHHHHHHHcCCCC---CCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHH
Confidence            999999999999999999999999987663   34455799999999999999999999999999999999999999999


Q ss_pred             HHcCcHHHHHHHHhcccccccccccCCcHHHHHHHcCCHHHHHHHHhcCCC
Q psy12891        462 AQNGHNQVLEEMRSSKALNVYSKKLGVTALHVAAYFGQADTVRELLSHVPG  512 (567)
Q Consensus       462 ~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~  512 (567)
                      +..|+.+++++|+++|++++.+|..|+||+++|+..|+.+++++|....+.
T Consensus       198 ~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~g~~~i~~~l~~~~~~  248 (253)
T 1yyh_A          198 AREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDLEHHH  248 (253)
T ss_dssp             HHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHC----
T ss_pred             HHCCCHHHHHHHHHcCCCccccccCCCCHHHHHHHcCCHHHHHHHHHHhhh
Confidence            999999999999999999999999999999999999999999999987543

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=100.00  E-value=9.7e-41  Score=317.37  Aligned_cols=277  Identities=19%  Similarity=0.170  Sum_probs=227.0

Q ss_pred             hcCCCCCChHHHHHHhcCcHHHHHHHHhCCCCCCccCCCCCCHHHHHHHcCCeeeeccccccccccccCCCCCCCCCCCc
Q psy12891        223 NKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVSSGKSLKHSVMSFRLPPHNIIPNGF  302 (567)
Q Consensus       223 ~~~~~~~~~~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  302 (567)
                      +..+..|.||||+|+..|+.++|++|+++|++++..+..|.                                       
T Consensus        14 ~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~g~---------------------------------------   54 (364)
T 3ljn_A           14 IKSDDENMEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGC---------------------------------------   54 (364)
T ss_dssp             --CCHHHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCC---------------------------------------
T ss_pred             cccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCC---------------------------------------
Confidence            45677789999999999999999999999998887765554                                       


Q ss_pred             cccchhhhhhhhhhcCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCcCCCCHHHHHHHcCCHHHHHHHHHh----CCCCc
Q psy12891        303 LVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRA----HPSLV  378 (567)
Q Consensus       303 ll~~~~~~~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~----~~~~~  378 (567)
                                       ||||+|+..|+.+++++|+++|++++.  ..|.||||+|+..++.+++++|++.    +.. .
T Consensus        55 -----------------t~L~~A~~~g~~~~v~~Ll~~g~~~~~--~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~-~  114 (364)
T 3ljn_A           55 -----------------TALHLACKFGCVDTAKYLASVGEVHSL--WHGQKPIHLAVMANKTDLVVALVEGAKERGQM-P  114 (364)
T ss_dssp             -----------------CHHHHHHHHCCHHHHHHHHHHCCCCCC--BTTBCHHHHHHHTTCHHHHHHHHHHHHHHTCC-H
T ss_pred             -----------------cHHHHHHHcCCHHHHHHHHHCCCCccc--cCCCCHHHHHHHcCCHHHHHHHHHhccccCCC-H
Confidence                             455556666788899999999986654  4688999999999999999999987    444 3


Q ss_pred             cc-----------------cCCCCCcHHHHHHHcC--CHHHHHHHHhcCCCcccccCCCCCCCCHHHHHHHcCcHHHHHH
Q psy12891        379 TA-----------------TTKDGNTCAHIAAMQG--SVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRV  439 (567)
Q Consensus       379 ~~-----------------~~~~~~~~l~~a~~~~--~~~~~~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~  439 (567)
                      +.                 .+..|.||||+|+..|  +.+++++|++.+.+.   ...+..|.||||+|+..|+.+++++
T Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~~---~~~d~~g~t~L~~A~~~g~~~~v~~  191 (364)
T 3ljn_A          115 ESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASP---TAKDKADETPLMRAMEFRNREALDL  191 (364)
T ss_dssp             HHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHTCCT---TCCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred             HHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCC---cccCCCCCCHHHHHHHcCCHHHHHH
Confidence            33                 6778999999999999  999999999987663   3445588999999999999999999


Q ss_pred             HHHcCCC-----CCCccCcCCcHHHHHHHcCcHHHHHHHHhcccccccccccCCcHHHHHHHcCCHHHHHHHHhcCCCCC
Q psy12891        440 LVKAGAS-----CTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLGVTALHVAAYFGQADTVRELLSHVPGTV  514 (567)
Q Consensus       440 Ll~~g~~-----~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~  514 (567)
                      |+++|++     ++..+..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++++...
T Consensus       192 Ll~~g~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~  271 (364)
T 3ljn_A          192 MMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGIDVNMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFL  271 (364)
T ss_dssp             HHHHCSCSSSCCTTCCCTTCCCTTHHHHTTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTCCHHHHHHHHHHSCHHH
T ss_pred             HHhcccccccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhChHHHHHHHHHcCCchh
Confidence            9999999     99999999999999999999999999999999999999999999999999999999999999876542


Q ss_pred             CCCCCCCcccccccCCCCCCCHHHHHHHcCCHHHHHHHHhccCCccccc
Q psy12891        515 KSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVRLLLNSAGVQVDAQ  563 (567)
Q Consensus       515 ~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~g~~~~~~  563 (567)
                      ....+ ...-.....+..+.||++.|+..|+.+.+..||.. ++|....
T Consensus       272 ~~~~~-~~~~~~~~~~~~~~~~l~~aa~~~~~~~v~~ll~~-~~~~~~~  318 (364)
T 3ljn_A          272 IQACP-YHNGTTVLPDRVVWLDFVPAAADPSKQEVLQLLQE-KLDEVVR  318 (364)
T ss_dssp             HHTCT-TBSSSSBCGGGCCCCTTSCSSCCHHHHHHHHHHHH-HHHHHHT
T ss_pred             hhcCc-ccCcccccccccccccchhhhhccCHHHHHHHHHH-HHHHHhh
Confidence            21111 00111134577889999999999999998888886 6555443

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=100.00  E-value=3.3e-40  Score=313.68  Aligned_cols=240  Identities=19%  Similarity=0.182  Sum_probs=213.4

Q ss_pred             hhhhhhhhhcCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCcCCCCHHHHHHHcCCHHHHHHHHHhCCCCccccCCCCCc
Q psy12891        308 AAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNT  387 (567)
Q Consensus       308 ~~~~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~  387 (567)
                      ....+..|..|.||||+|+..|+.++|++|+++|++++..+..|.||||+|+..|+.+++++|++.++.   ..+..|.|
T Consensus        10 ~~~~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~---~~~~~g~t   86 (364)
T 3ljn_A           10 KLNRIKSDDENMEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVDTAKYLASVGEV---HSLWHGQK   86 (364)
T ss_dssp             ------CCHHHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHCCHHHHHHHHHHCCC---CCCBTTBC
T ss_pred             CCCccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCC---ccccCCCC
Confidence            445566788899999999999999999999999999999999999999999999999999999999884   23458999


Q ss_pred             HHHHHHHcCCHHHHHHHHhc----CCCccc--------------ccCCCCCCCCHHHHHHHcC--cHHHHHHHHHcCCCC
Q psy12891        388 CAHIAAMQGSVGVIEELMKF----DRSGVI--------------SARNRVTEATPLQLAAEGG--HANVVRVLVKAGASC  447 (567)
Q Consensus       388 ~l~~a~~~~~~~~~~~ll~~----~~~~~~--------------~~~~~~~~~t~L~~A~~~~--~~~~v~~Ll~~g~~~  447 (567)
                      |||+|+..++.+++++|++.    +.....              ....+..|.||||+|+..|  +.+++++|+++|+++
T Consensus        87 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~~  166 (364)
T 3ljn_A           87 PIHLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASP  166 (364)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHTCCT
T ss_pred             HHHHHHHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCC
Confidence            99999999999999999997    443221              1114457899999999999  999999999999999


Q ss_pred             CCccCcCCcHHHHHHHcCcHHHHHHHHhcccc-----cccccccCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCc
Q psy12891        448 TDENKTGFTAVHLAAQNGHNQVLEEMRSSKAL-----NVYSKKLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGA  522 (567)
Q Consensus       448 ~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~-----~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~  522 (567)
                      +..+..|.||||+|+..|+.+++++|+++|++     ++..|..|+||||+|+..|+.+++++|++++++.         
T Consensus       167 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~---------  237 (364)
T 3ljn_A          167 TAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGIDV---------  237 (364)
T ss_dssp             TCCCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTHHHHTTTCHHHHHHHHTTTCCT---------
T ss_pred             cccCCCCCCHHHHHHHcCCHHHHHHHHhcccccccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC---------
Confidence            99999999999999999999999999999998     8999999999999999999999999999998765         


Q ss_pred             ccccccCCCCCCCHHHHHHHcCCHHHHHHHHhccCCcccccc
Q psy12891        523 SFLGELGSESGMTPLHLAAYSGNENVVRLLLNSAGVQVDAQT  564 (567)
Q Consensus       523 ~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~g~~~~~~~  564 (567)
                          +.+|..|.||||+|++.|+.++|++|+++ |++++..+
T Consensus       238 ----~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~-~~~~~~~~  274 (364)
T 3ljn_A          238 ----NMEDNEHTVPLYLSVRAAMVLLTKELLQK-TDVFLIQA  274 (364)
T ss_dssp             ----TCCCTTSCCHHHHHHHTCCHHHHHHHHHH-SCHHHHHT
T ss_pred             ----CCCCCCCCCHHHHHHHhChHHHHHHHHHc-CCchhhhc
Confidence                66789999999999999999999999997 88876543

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=100.00  E-value=4.6e-39  Score=286.57  Aligned_cols=228  Identities=27%  Similarity=0.371  Sum_probs=210.5

Q ss_pred             hhhhhhcCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCcCCCCHHHHHHHcCCHHHHHHHHHhCCCCccccCCCCCcHHH
Q psy12891        311 IDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAH  390 (567)
Q Consensus       311 ~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~  390 (567)
                      ++..+..|.|||+.|+..|+.+++++|+++|++++..+..|.||||+|+..++.+++++|++.+.. .+..+..|.||||
T Consensus         4 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~   82 (237)
T 3b7b_A            4 FKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGAL-VDPKDAEGSTCLH   82 (237)
T ss_dssp             CCCSSCCSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCC-CCCCCTTSCCHHH
T ss_pred             cccccCCCCCHHHHHHHcCcHHHHHHHHHcCCCcCccCCCCCCHHHHHHHhCCHHHHHHHHhCCCC-CCCCCCCCCcHHH
Confidence            455678899999999999999999999999999999999999999999999999999999998877 6778899999999


Q ss_pred             HHHHcCCHHHHHHHHhcCCCcccccCCCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCccCcCCcHHHHHHHcCcHHHH
Q psy12891        391 IAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVL  470 (567)
Q Consensus       391 ~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v  470 (567)
                      +|+..++.+++++|++.+..  .....+..|.||||+|+..++.+++++|+++|++++..+..|.||||+|+..|+.+++
T Consensus        83 ~A~~~~~~~~~~~Ll~~~~~--~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~  160 (237)
T 3b7b_A           83 LAAKKGHYEVVQYLLSNGQM--DVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIA  160 (237)
T ss_dssp             HHHHTTCHHHHHHHHTTTCC--CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCHHHH
T ss_pred             HHHHcCCHHHHHHHHhCCCC--CcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHCCCHHHH
Confidence            99999999999999998732  2344555789999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhcccccccccccCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcccccccCCCCCCCHHHHHHHcCCHHHHH
Q psy12891        471 EEMRSSKALNVYSKKLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVR  550 (567)
Q Consensus       471 ~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~  550 (567)
                      ++|++.|++++.+|..|.||||+|+..++.+++++|++++++.             +.+|..|.|||++|+.+|+...+.
T Consensus       161 ~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~-------------~~~d~~g~t~l~~A~~~~~~~~~~  227 (237)
T 3b7b_A          161 EILLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDV-------------TLKNKEGETPLQCASLNSQVWSAL  227 (237)
T ss_dssp             HHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCT-------------TCCCTTSCCHHHHSCTTCHHHHHH
T ss_pred             HHHHHcCCCCCCcCCCCCCHHHHHHHhCCHhHHHHHHHcCCCC-------------CccCCCCCCHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999998765             567899999999999999987666


Q ss_pred             HHHh
Q psy12891        551 LLLN  554 (567)
Q Consensus       551 ~Ll~  554 (567)
                      .|++
T Consensus       228 ~l~~  231 (237)
T 3b7b_A          228 QMSK  231 (237)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            6654

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=100.00  E-value=1.8e-39  Score=290.23  Aligned_cols=232  Identities=23%  Similarity=0.276  Sum_probs=207.4

Q ss_pred             hhhhhcCCCHHHHHHHcCcHHHHHHHHH----cCCCCCCcCcCCCCHHHHHHHcCCHHHHHHHHHhCCCCccccCCCCCc
Q psy12891        312 DILTLRKQTPLHLAAEAGQLQVCKLLLD----LGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNT  387 (567)
Q Consensus       312 ~~~~~~~~t~L~~a~~~~~~~~v~~Ll~----~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~  387 (567)
                      +..|..|.||||+|+..|+.+++++|++    .|++++..+..|.||||+|+..++.+++++|++.+.+ .+..+..|.|
T Consensus         3 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t   81 (241)
T 1k1a_A            3 TRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGAS-PMALDRHGQT   81 (241)
T ss_dssp             ----CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCC
T ss_pred             cccCCCCCcHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcCCC-ccccCCCCCC
Confidence            4568899999999999999999999997    7999999999999999999999999999999998877 6778899999


Q ss_pred             HHHHHHHcCCHHHHHHHHhcCCCcc-cccCCCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcc-CcCCcHHHHHHHcC
Q psy12891        388 CAHIAAMQGSVGVIEELMKFDRSGV-ISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDEN-KTGFTAVHLAAQNG  465 (567)
Q Consensus       388 ~l~~a~~~~~~~~~~~ll~~~~~~~-~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~-~~g~t~l~~A~~~~  465 (567)
                      |||+|+..++.+++++|++.+.... .....+..|.||||+|+..|+.+++++|+++|++++..+ ..|.||||+|+..|
T Consensus        82 ~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~  161 (241)
T 1k1a_A           82 AAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENN  161 (241)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTT
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCCccccccccCcCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHcC
Confidence            9999999999999999999876322 234455689999999999999999999999999999988 88999999999999


Q ss_pred             cHHHHHHHHhcccccccccccCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcccccccCCCCCCCHHHHHHHcCC
Q psy12891        466 HNQVLEEMRSSKALNVYSKKLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGN  545 (567)
Q Consensus       466 ~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~  545 (567)
                      +.+++++|+++|++++.+|..|+||||+|+..|+.+++++|++++++.             +.+|..|.|||++|+..|+
T Consensus       162 ~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-------------~~~~~~g~tpl~~A~~~~~  228 (241)
T 1k1a_A          162 SLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADS-------------SLKNCHNDTPLMVARSRRV  228 (241)
T ss_dssp             CHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCT-------------TCCCTTSCCTTTTCSSHHH
T ss_pred             CHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcCCCC-------------CCcCCCCCCHHHHHHhcCc
Confidence            999999999999999999999999999999999999999999998764             5678999999999999999


Q ss_pred             HHHHHHHHhccCC
Q psy12891        546 ENVVRLLLNSAGV  558 (567)
Q Consensus       546 ~~~v~~Ll~~~g~  558 (567)
                      .++++.|++. ++
T Consensus       229 ~~i~~~l~~~-~a  240 (241)
T 1k1a_A          229 IDILRGKATR-PA  240 (241)
T ss_dssp             HHHHTC-------
T ss_pred             HHHHhhhccC-CC
Confidence            9999999985 54

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=100.00  E-value=8.3e-39  Score=285.89  Aligned_cols=231  Identities=26%  Similarity=0.309  Sum_probs=199.5

Q ss_pred             hcCCCCCChHHHHHHhcCcHHHHHHHHh----CCCCCCccCCCCCCHHHHHHHcCCeeeeccccccccccccCCCCCCCC
Q psy12891        223 NKQTSIGWTPLLIACNRGHMELVNTMLN----NHARVDVFDQEGRSALHLAAEHGYLKVSSGKSLKHSVMSFRLPPHNII  298 (567)
Q Consensus       223 ~~~~~~~~~~L~~A~~~~~~~~v~~Ll~----~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (567)
                      +.++..|.||||+|+..|+.+++++|++    .|.+++..+..|                                    
T Consensus         3 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g------------------------------------   46 (241)
T 1k1a_A            3 TRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLR------------------------------------   46 (241)
T ss_dssp             ----CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTS------------------------------------
T ss_pred             cccCCCCCcHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccC------------------------------------
Confidence            5678889999999999999999999987    677777666544                                    


Q ss_pred             CCCccccchhhhhhhhhhcCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCcCCCCHHHHHHHcCCHHHHHHHHHhCCC--
Q psy12891        299 PNGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPS--  376 (567)
Q Consensus       299 ~~~~ll~~~~~~~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~--  376 (567)
                                          .|||++|+..|+.+++++|+++|++++..+..|.||||+|+..++.+++++|++.++.  
T Consensus        47 --------------------~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~  106 (241)
T 1k1a_A           47 --------------------QTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGT  106 (241)
T ss_dssp             --------------------CCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCTTS
T ss_pred             --------------------CCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcc
Confidence                                4556666667889999999999999999999999999999999999999999999872  


Q ss_pred             -CccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCccCcCC
Q psy12891        377 -LVTATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGF  455 (567)
Q Consensus       377 -~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~  455 (567)
                       ..+..+..|.||||+|+..++.+++++|++.+.+..  ......|.||||+|+..|+.+++++|+++|++++..+..|.
T Consensus       107 ~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~--~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~  184 (241)
T 1k1a_A          107 LDLEARNYDGLTALHVAVNTECQETVQLLLERGADID--AVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGS  184 (241)
T ss_dssp             CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTT--CCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCBCTTSC
T ss_pred             ccccccCcCCCcHHHHHHHcCCHHHHHHHHHcCCCcc--cccccCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCC
Confidence             467788899999999999999999999999876633  22325789999999999999999999999999999999999


Q ss_pred             cHHHHHHHcCcHHHHHHHHhcccccccccccCCcHHHHHHHcCCHHHHHHHHhcCC
Q psy12891        456 TAVHLAAQNGHNQVLEEMRSSKALNVYSKKLGVTALHVAAYFGQADTVRELLSHVP  511 (567)
Q Consensus       456 t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~  511 (567)
                      ||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.++++.|.++.+
T Consensus       185 t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~i~~~l~~~~a  240 (241)
T 1k1a_A          185 SALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDILRGKATRPA  240 (241)
T ss_dssp             BHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCTTTTCSSHHHHHHHTC------
T ss_pred             CHHHHHHHcCCHHHHHHHHhcCCCCCCcCCCCCCHHHHHHhcCcHHHHhhhccCCC
Confidence            99999999999999999999999999999999999999999999999999998743

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=100.00  E-value=4.3e-38  Score=280.30  Aligned_cols=229  Identities=24%  Similarity=0.281  Sum_probs=207.1

Q ss_pred             hhcCCCCCChHHHHHHhcCcHHHHHHHHhCCCCCCccCCCCCCHHHHHHHcCCeeeeccccccccccccCCCCCCCCCCC
Q psy12891        222 LNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVSSGKSLKHSVMSFRLPPHNIIPNG  301 (567)
Q Consensus       222 ~~~~~~~~~~~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  301 (567)
                      ++.++..|.||||+|+..|+.+++++|+++|++++..+..|.                                      
T Consensus         4 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~--------------------------------------   45 (237)
T 3b7b_A            4 FKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQR--------------------------------------   45 (237)
T ss_dssp             CCCSSCCSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCC--------------------------------------
T ss_pred             cccccCCCCCHHHHHHHcCcHHHHHHHHHcCCCcCccCCCCC--------------------------------------
Confidence            466788899999999999999999999999998887665544                                      


Q ss_pred             ccccchhhhhhhhhhcCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCcCCCCHHHHHHHcCCHHHHHHHHHhCCCCcccc
Q psy12891        302 FLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTAT  381 (567)
Q Consensus       302 ~ll~~~~~~~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~  381 (567)
                                        |||+.|+..|+.+++++|+++|++++..+..|.||||+|+..++.+++++|++.++...+..
T Consensus        46 ------------------t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~  107 (237)
T 3b7b_A           46 ------------------TPLMEAAENNHLEAVKYLIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQ  107 (237)
T ss_dssp             ------------------CHHHHHHHTTCHHHHHHHHTTTCCCCCCCTTSCCHHHHHHHTTCHHHHHHHHTTTCCCTTCC
T ss_pred             ------------------CHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcccC
Confidence                              55566666778999999999999999999999999999999999999999999987668888


Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCccCcCCcHHHHH
Q psy12891        382 TKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLA  461 (567)
Q Consensus       382 ~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A  461 (567)
                      +..|.||||+|+..++.+++++|++.+.+.   ...+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|
T Consensus       108 ~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~---~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A  184 (237)
T 3b7b_A          108 DDGGWTPMIWATEYKHVDLVKLLLSKGSDI---NIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSPLHIA  184 (237)
T ss_dssp             CTTSCCHHHHHHHTTCHHHHHHHHHTTCCT---TCCCTTSCCHHHHHHHHCCHHHHHHHHTTTCCTTCCCTTCCCHHHHH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHCCCCC---CccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCcCCCCCCHHHHH
Confidence            999999999999999999999999987663   33455789999999999999999999999999999999999999999


Q ss_pred             HHcCcHHHHHHHHhcccccccccccCCcHHHHHHHcCCHHHHHHHHhc
Q psy12891        462 AQNGHNQVLEEMRSSKALNVYSKKLGVTALHVAAYFGQADTVRELLSH  509 (567)
Q Consensus       462 ~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~  509 (567)
                      +..++.+++++|+++|++++.+|..|+||||+|+..++.+.+..|++.
T Consensus       185 ~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~~~~~~~~~~~l~~~  232 (237)
T 3b7b_A          185 ARENRYDCVVLFLSRDSDVTLKNKEGETPLQCASLNSQVWSALQMSKA  232 (237)
T ss_dssp             HHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHSCTTCHHHHHHHHHHH
T ss_pred             HHhCCHhHHHHHHHcCCCCCccCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999777776653

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=100.00  E-value=8.3e-38  Score=279.46  Aligned_cols=234  Identities=20%  Similarity=0.211  Sum_probs=210.7

Q ss_pred             hhhhcCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCcCCCCHHHHHHHcCCHHHHHHHHHhCCCCccccCCCCCcHHHHH
Q psy12891        313 ILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIA  392 (567)
Q Consensus       313 ~~~~~~~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a  392 (567)
                      ..+..+.++|+.|+..|+.+++++|++.|++++..+..|.||||+|+..++.+++++|++.++......+..|.|||+.|
T Consensus         4 ~~d~~~~~~l~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~L~~A   83 (240)
T 3eu9_A            4 HIDDYSTWDIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWA   83 (240)
T ss_dssp             CCSCGGGCCHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBCHHHHH
T ss_pred             ccccccchHHHHHHHcCChHHHHHHHHcCCCcCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCChhHHH
Confidence            34667889999999999999999999999999999999999999999999999999999999987767777799999999


Q ss_pred             HHcCCHHHHHHHHhcCCCcccccCCCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCccCcCCcHHHHHHHcCc-HHHHH
Q psy12891        393 AMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGH-NQVLE  471 (567)
Q Consensus       393 ~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~-~~~v~  471 (567)
                      +..++.+++++|++.+.+..   ..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..++ .++++
T Consensus        84 ~~~~~~~~v~~Ll~~g~~~~---~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~  160 (240)
T 3eu9_A           84 TRQGHLSMVVQLMKYGADPS---LIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTR  160 (240)
T ss_dssp             HHHTCHHHHHHHHHTTCCTT---CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCSSTTHH
T ss_pred             HHcCCHHHHHHHHHcCCCCc---ccCCCCCCHHHHHHHcCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCChHHHHH
Confidence            99999999999999876643   345578999999999999999999999999999999999999999997665 89999


Q ss_pred             HHHhcccccccccc-cCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcccccccCCCCCCCHHHHHHHcCCHHHHH
Q psy12891        472 EMRSSKALNVYSKK-LGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVR  550 (567)
Q Consensus       472 ~Ll~~~~~~~~~~~-~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~  550 (567)
                      +|++.|++++..+. .|.||||+|+..++.+++++|++++.+.             +..+..|.|||++|++.|+.++++
T Consensus       161 ~L~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-------------~~~~~~g~t~l~~A~~~~~~~~v~  227 (240)
T 3eu9_A          161 LLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANV-------------DAQNIKGESALDLAKQRKNVWMIN  227 (240)
T ss_dssp             HHHHTTCCTTCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCT-------------TCBCTTSCBHHHHHHHTTCHHHHH
T ss_pred             HHHhcCCCcchhhccCCCcHHHHHHHcCCHHHHHHHHHcCCCC-------------CCcCCCCCCHHHHHHHcCcHHHHH
Confidence            99999999999886 8999999999999999999999997764             567889999999999999999999


Q ss_pred             HHHhccCCccccc
Q psy12891        551 LLLNSAGVQVDAQ  563 (567)
Q Consensus       551 ~Ll~~~g~~~~~~  563 (567)
                      +|+++ |.+.+..
T Consensus       228 ~L~~~-~~~~~~~  239 (240)
T 3eu9_A          228 HLQEA-RQAKGYD  239 (240)
T ss_dssp             HHHHH-C------
T ss_pred             HHHHh-hhccCcC
Confidence            99997 8776543

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=100.00  E-value=5.2e-38  Score=278.52  Aligned_cols=226  Identities=21%  Similarity=0.216  Sum_probs=208.8

Q ss_pred             cCCCHHHHHHHcCcHHHHHHHHHcCCC-CCCcCcCCCCHHHHHHHcCCHHHHHHHHHhCCCCccccCCCCCcHHHHHHHc
Q psy12891        317 RKQTPLHLAAEAGQLQVCKLLLDLGAS-IDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQ  395 (567)
Q Consensus       317 ~~~t~L~~a~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~  395 (567)
                      .+.+||+.|+..|+.+.+++|++.+.. ++..+..|.||||+|+..++.+++++|++.+.+ ++..+..|.||||+|+..
T Consensus         5 ~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~   83 (231)
T 3aji_A            5 VSNIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVP-VNDKDDAGWSPLHIAASA   83 (231)
T ss_dssp             CSSSHHHHHHHHTCHHHHHHHHHHCGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-SCCCCTTSCCHHHHHHHH
T ss_pred             cccchHHHHHHhCCHHHHHHHHHhchhhhhcCCCCCCCHHHHHHHcCcHHHHHHHHHhCCC-CCCcCCCCCCHHHHHHHc
Confidence            467999999999999999999987644 677889999999999999999999999999876 678899999999999999


Q ss_pred             CCHHHHHHHHhcCCCcccccCCCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCccCcCCcHHHHHHHcCcHHHHHHHHh
Q psy12891        396 GSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRS  475 (567)
Q Consensus       396 ~~~~~~~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~  475 (567)
                      ++.+++++|++.+.+.   ...+..|.||||+|+..++.+++++|+++|++++..+..|.||||+|+..|+.+++++|++
T Consensus        84 ~~~~~v~~Ll~~g~~~---~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~  160 (231)
T 3aji_A           84 GXDEIVKALLVKGAHV---NAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLF  160 (231)
T ss_dssp             TCHHHHHHHHHTTCCT---TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCCC---CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHh
Confidence            9999999999987663   3345578999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccccccccCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcccccccCCCCCCCHHHHHHHcCCHHHHHHHHhc
Q psy12891        476 SKALNVYSKKLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVRLLLNS  555 (567)
Q Consensus       476 ~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~  555 (567)
                      +|++++.+|..|+||||+|+..++.+++++|++++.+.             +.+|..|.|||++|++.++.+++++|+++
T Consensus       161 ~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-------------~~~~~~g~t~l~~A~~~~~~~i~~lL~~~  227 (231)
T 3aji_A          161 YKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASI-------------YIENKEEKTPLQVAKGGLGLILKRLAEGE  227 (231)
T ss_dssp             TTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCS-------------CCCCTTSCCHHHHSCHHHHHHHHHHHHHH
T ss_pred             cCCCccccCCCCCCHHHHHHHCCCHHHHHHHHHCCCCC-------------CCCCCCCCCHHHHHHhhHHHHHHHHHccc
Confidence            99999999999999999999999999999999998765             56789999999999999999999999986


Q ss_pred             cCCcc
Q psy12891        556 AGVQV  560 (567)
Q Consensus       556 ~g~~~  560 (567)
                       |+++
T Consensus       228 -~a~i  231 (231)
T 3aji_A          228 -EASM  231 (231)
T ss_dssp             -HHCC
T ss_pred             -cccC
Confidence             7764

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=100.00  E-value=5.7e-38  Score=287.78  Aligned_cols=220  Identities=24%  Similarity=0.224  Sum_probs=188.8

Q ss_pred             hhhhhcCCCHHHHHHHcCcHHHHHHHHHcCCC---CCCcCcCCCCHHHHHHHcCCHHHHHHHHHhCCCCccccCCCCCcH
Q psy12891        312 DILTLRKQTPLHLAAEAGQLQVCKLLLDLGAS---IDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTC  388 (567)
Q Consensus       312 ~~~~~~~~t~L~~a~~~~~~~~v~~Ll~~g~~---~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~  388 (567)
                      +..+..|.||||+|+..|+.+++++|+++|++   ++..+..|.||||+|+..|+.+++++|++.+++ ++..+..|.||
T Consensus         3 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~-~~~~~~~g~tp   81 (282)
T 1oy3_D            3 GYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAG-VLVAERGGHTA   81 (282)
T ss_dssp             CCCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-SSCCCTTSCCH
T ss_pred             CccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCCCCCCCCH
Confidence            45678899999999999999999999999998   788999999999999999999999999999887 67889999999


Q ss_pred             HHHHHHcCCHHHHHHHHhcCCCcc--------------------------------------------cccCCCCCCCCH
Q psy12891        389 AHIAAMQGSVGVIEELMKFDRSGV--------------------------------------------ISARNRVTEATP  424 (567)
Q Consensus       389 l~~a~~~~~~~~~~~ll~~~~~~~--------------------------------------------~~~~~~~~~~t~  424 (567)
                      ||+|+..++.+++++|++.+....                                            .....+..|.||
T Consensus        82 L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~  161 (282)
T 1oy3_D           82 LHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTP  161 (282)
T ss_dssp             HHHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCCH
T ss_pred             HHHHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCCCCcCH
Confidence            999999999999999999765421                                            133456689999


Q ss_pred             HHHHHHcCcHHHHHHHHHcCCCCCCccCc-CCcHHHHHHHcCcHHHHHHHHhcccccccccccCCcHHHHHHHcCCHHHH
Q psy12891        425 LQLAAEGGHANVVRVLVKAGASCTDENKT-GFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLGVTALHVAAYFGQADTV  503 (567)
Q Consensus       425 L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~-g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~  503 (567)
                      ||+|+..|+.+++++|+++|++++..+.. |+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..++.+++
T Consensus       162 L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~v  241 (282)
T 1oy3_D          162 LHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILA  241 (282)
T ss_dssp             HHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHTSSCHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCcccccCCCCHHHHHHHcCCcHHH
Confidence            99999999999999999999999998865 99999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCCCCCCCCCCCcccccccCCCCCCCHHHHHHHcCC
Q psy12891        504 RELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGN  545 (567)
Q Consensus       504 ~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~  545 (567)
                      ++|++++++.             +.++..|.|||++|.....
T Consensus       242 ~~Ll~~ga~~-------------~~~~~~g~tpl~~a~~~~~  270 (282)
T 1oy3_D          242 RLLRAHGAPE-------------PEDGGDKLSPCSSSGSDSD  270 (282)
T ss_dssp             HHHHHTTCCC-------------CCCC---------------
T ss_pred             HHHHHcCCCc-------------CcCCCcccccccccCCccc
Confidence            9999998875             5678999999999987653

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=100.00  E-value=8.2e-39  Score=287.64  Aligned_cols=235  Identities=23%  Similarity=0.266  Sum_probs=175.3

Q ss_pred             cCCCCCChHHHHHHhcCcHHHHHHHHhCCCCCCccCCCCCCHHHHHHHcCCeeeeccccccccccccCCCCCCCCCCCcc
Q psy12891        224 KQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVSSGKSLKHSVMSFRLPPHNIIPNGFL  303 (567)
Q Consensus       224 ~~~~~~~~~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  303 (567)
                      .++..+.++|+.|+..|+.++|++|++.|.+.....                                            
T Consensus         6 kkd~~~~~~L~~A~~~G~~~~v~~LL~~~~~~~~~~--------------------------------------------   41 (269)
T 4b93_B            6 KKDYREVEKLLRAVADGDLEMVRYLLEWTEEDLEDA--------------------------------------------   41 (269)
T ss_dssp             -CCCHHHHHHHHHHHTTCHHHHHHHHTCC---------------------------------------------------
T ss_pred             ccCccchhHHHHHHHcCCHHHHHHHHHCCCcccccc--------------------------------------------
Confidence            456667899999999999999999999887542111                                            


Q ss_pred             ccchhhhhhhhhhcCCCHHHHHHHcCcH-HHHHHHHHcCCCCCCcCcCCCCHHHHHHHcCCHHHHHHHHHhCCCCccccC
Q psy12891        304 VHDHAAVIDILTLRKQTPLHLAAEAGQL-QVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATT  382 (567)
Q Consensus       304 l~~~~~~~~~~~~~~~t~L~~a~~~~~~-~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~  382 (567)
                          ...++..+..+.|||+.|+..+.. .++++|++.|+++|..|..|.||||+|+..|+.+++++|++.+++ ....+
T Consensus        42 ----~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~Gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~~a~-~~~~~  116 (269)
T 4b93_B           42 ----EDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPASGLGVNVTSQDGSSPLHVAALHGRADLIPLLLKHGAN-AGARN  116 (269)
T ss_dssp             -------------------------------------CCCCTTCCCTTSCCHHHHHHHTTCTTHHHHHHHTTCC-TTCCC
T ss_pred             ----cccccccCccCCCHHHHHHHhCCHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHhcCCC-cCccC
Confidence                111233455677888888877665 488999999999999999999999999999999999999999887 67888


Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCccCcCCcHHHHHH
Q psy12891        383 KDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAA  462 (567)
Q Consensus       383 ~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~  462 (567)
                      ..|.||++.|+..++.+++++|++.+.+.   +..+..|.||||+|+..|+.+++++|+++|+++|..+..|+||||+|+
T Consensus       117 ~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~---n~~d~~g~TpL~~A~~~g~~~~v~~Ll~~gadvn~~~~~g~t~Lh~A~  193 (269)
T 4b93_B          117 ADQAVPLHLACQQGHFQVVKCLLDSNAKP---NKKDLSGNTPLIYACSGGHHELVALLLQHGASINASNNKGNTALHEAV  193 (269)
T ss_dssp             TTCCCHHHHHHHHTCHHHHHHHHHTTCCS---CCCCTTCCCHHHHHHHTTCGGGHHHHHHTTCCTTCBCTTSCBHHHHHH
T ss_pred             CCCCCccccccccChHHHHHHHHHCCCCC---CCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCccccCCCcHHHHHH
Confidence            99999999999999999999999987764   344568999999999999999999999999999999999999999999


Q ss_pred             HcCcHHHHHHHHhcccccccccccCCcHHHHHHHcCC-HHHHHHHHhcC
Q psy12891        463 QNGHNQVLEEMRSSKALNVYSKKLGVTALHVAAYFGQ-ADTVRELLSHV  510 (567)
Q Consensus       463 ~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~-~~~~~~Ll~~~  510 (567)
                      ..|+.++|++|+++|++++.+|..|+||||+|+++++ .+++++|.+.+
T Consensus       194 ~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~~~~~i~~lL~~l~~~~  242 (269)
T 4b93_B          194 IEKHVFVVELLLLHGASVQVLNKRQRTAVDCAEQNSKIMELLQVVPSCV  242 (269)
T ss_dssp             HTTCHHHHHHHHHTTCCSCCCCTTSCCSGGGSCTTCHHHHHTTC-----
T ss_pred             HcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHhCCcHHHHHHHHHHhc
Confidence            9999999999999999999999999999999988776 34555554443

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=100.00  E-value=5.7e-39  Score=288.67  Aligned_cols=230  Identities=23%  Similarity=0.289  Sum_probs=172.7

Q ss_pred             hhcCCCHHHHHHHcCcHHHHHHHHHcCCC--------CCCcCcCCCCHHHHHHHcCCH-HHHHHHHHhCCCCccccCCCC
Q psy12891        315 TLRKQTPLHLAAEAGQLQVCKLLLDLGAS--------IDATDDQGQKPIHVAAQNNFP-EVAQIFLRAHPSLVTATTKDG  385 (567)
Q Consensus       315 ~~~~~t~L~~a~~~~~~~~v~~Ll~~g~~--------~~~~~~~g~t~L~~A~~~~~~-~~~~~Ll~~~~~~~~~~~~~~  385 (567)
                      |..+.++|+.|+..|+.++|++|++.|++        ++..+..+.|||+.|+..+.. .++++|++.+.+ ++..+.+|
T Consensus         8 d~~~~~~L~~A~~~G~~~~v~~LL~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~Gad-vn~~d~~G   86 (269)
T 4b93_B            8 DYREVEKLLRAVADGDLEMVRYLLEWTEEDLEDAEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPASGLG-VNVTSQDG   86 (269)
T ss_dssp             CCHHHHHHHHHHHTTCHHHHHHHHTCC----------------------------------------CCCC-TTCCCTTS
T ss_pred             CccchhHHHHHHHcCCHHHHHHHHHCCCcccccccccccccCccCCCHHHHHHHhCCHHHHHHHHHHCCCC-CCCcCCCC
Confidence            44566899999999999999999999876        456677899999999987765 578889988877 78899999


Q ss_pred             CcHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCccCcCCcHHHHHHHcC
Q psy12891        386 NTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNG  465 (567)
Q Consensus       386 ~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~  465 (567)
                      +||||+|+..|+.+++++|++.+.+..   ..+..|.||+++|+..++.+++++|+++|++++.+|..|+||||+|+..|
T Consensus        87 ~TpLh~A~~~g~~~~v~~Ll~~~a~~~---~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~n~~d~~g~TpL~~A~~~g  163 (269)
T 4b93_B           87 SSPLHVAALHGRADLIPLLLKHGANAG---ARNADQAVPLHLACQQGHFQVVKCLLDSNAKPNKKDLSGNTPLIYACSGG  163 (269)
T ss_dssp             CCHHHHHHHTTCTTHHHHHHHTTCCTT---CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTT
T ss_pred             CCHHHHHHHcCcHHHHHHHHhcCCCcC---ccCCCCCCccccccccChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCC
Confidence            999999999999999999999877643   34457899999999999999999999999999999999999999999999


Q ss_pred             cHHHHHHHHhcccccccccccCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcccccccCCCCCCCHHHHHHHcCC
Q psy12891        466 HNQVLEEMRSSKALNVYSKKLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGN  545 (567)
Q Consensus       466 ~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~  545 (567)
                      +.+++++|+++|++++.++..|+||||+|+..|+.+++++|++++++.             +.+|..|.||||+|+++++
T Consensus       164 ~~~~v~~Ll~~gadvn~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~Gad~-------------~~~d~~G~TpL~~A~~~~~  230 (269)
T 4b93_B          164 HHELVALLLQHGASINASNNKGNTALHEAVIEKHVFVVELLLLHGASV-------------QVLNKRQRTAVDCAEQNSK  230 (269)
T ss_dssp             CGGGHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCS-------------CCCCTTSCCSGGGSCTTCH
T ss_pred             CHHHHHHHHHCCCCCCccccCCCcHHHHHHHcCCHHHHHHHHHCCCCC-------------CCcCCCCCCHHHHHHhCCc
Confidence            999999999999999999999999999999999999999999998765             6778999999999998876


Q ss_pred             -HHHHHHHHhccCCcccc
Q psy12891        546 -ENVVRLLLNSAGVQVDA  562 (567)
Q Consensus       546 -~~~v~~Ll~~~g~~~~~  562 (567)
                       .+++++|.. .|++++-
T Consensus       231 i~~lL~~l~~-~~~~~~~  247 (269)
T 4b93_B          231 IMELLQVVPS-CVASLDD  247 (269)
T ss_dssp             HHHHTTC-----------
T ss_pred             HHHHHHHHHH-hchhhhh
Confidence             345555554 3655544

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=100.00  E-value=1.9e-37  Score=273.28  Aligned_cols=217  Identities=22%  Similarity=0.240  Sum_probs=177.1

Q ss_pred             CcHHHHHHHHHcCCCCCCc-CcCCCCHHHHHHHcCCHHHHHHHHHhCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhc
Q psy12891        329 GQLQVCKLLLDLGASIDAT-DDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIEELMKF  407 (567)
Q Consensus       329 ~~~~~v~~Ll~~g~~~~~~-~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~  407 (567)
                      |+.+++++|+++|++++.. +..|.||||+|+..++.+++++|++.+.+ .+..+..|.||||+|+..++.+++++|++.
T Consensus         2 g~~~~i~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~   80 (223)
T 2f8y_A            2 DAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASAD-ANIQDNMGRTPLHAAVSADAQGVFQILIRN   80 (223)
T ss_dssp             ---CCEETTEETTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHB
T ss_pred             CcHHHHHHHHHcCCCcccccCCCCCchHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence            5667778888888887765 67788888888888888888888887666 566777888888888888888888888876


Q ss_pred             CCCcccccCCCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCccCcCCcHHHHHHHcCcHHHHHHHHhcccccccccccC
Q psy12891        408 DRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLG  487 (567)
Q Consensus       408 ~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g  487 (567)
                      +..  .....+..|.||||+|+..++.+++++|+++|++++..+..|.||||+|+..|+.+++++|+++|++++.+|..|
T Consensus        81 ~~~--~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g  158 (223)
T 2f8y_A           81 RAT--DLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNRE  158 (223)
T ss_dssp             TTS--CTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTC
T ss_pred             CCC--CcccCCCCCCcHHHHHHHhCcHHHHHHHHHcCCCCcCcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCC
Confidence            543  233445578889999999999999999999999999888889999999999999999999999999888888889


Q ss_pred             CcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcccccccCCCCCCCHHHHHHHcCCHHHHHHHHhccCCcccc
Q psy12891        488 VTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVRLLLNSAGVQVDA  562 (567)
Q Consensus       488 ~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~g~~~~~  562 (567)
                      .||||+|+..++.+++++|++++++.             +.+|..|.|||++|++.|+.+++++|+++ |+....
T Consensus       159 ~t~L~~A~~~~~~~~v~~Ll~~ga~~-------------~~~~~~g~t~l~~A~~~~~~~i~~~L~~~-g~~~~~  219 (223)
T 2f8y_A          159 ETPLFLAAREGSYETAKVLLDHFANR-------------DITDHMDRLPRDIAQERMHHDIVRLLDEY-NLVRSP  219 (223)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHTTCCT-------------TCCCTTCCCHHHHHHHTTCHHHHHHHHHT-TCSSCC
T ss_pred             cCHHHHHHHcCCHHHHHHHHHcCCCC-------------ccccccCCCHHHHHHHhcchHHHHHHHHc-CCCccc
Confidence            99999999999999999999887654             55678889999999999999999999985 876554

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=100.00  E-value=4.1e-37  Score=272.24  Aligned_cols=221  Identities=23%  Similarity=0.232  Sum_probs=198.4

Q ss_pred             CCCHHHHHHHcCcHHHHHHHHHcCCCCCC-cCcCCCCHHHHHHHcCCHHHHHHHHHhC--CCCccccCCCCCcHHHHHHH
Q psy12891        318 KQTPLHLAAEAGQLQVCKLLLDLGASIDA-TDDQGQKPIHVAAQNNFPEVAQIFLRAH--PSLVTATTKDGNTCAHIAAM  394 (567)
Q Consensus       318 ~~t~L~~a~~~~~~~~v~~Ll~~g~~~~~-~~~~g~t~L~~A~~~~~~~~~~~Ll~~~--~~~~~~~~~~~~~~l~~a~~  394 (567)
                      |.|||+.|+..|+.+++++|++.|.++.. .+..|.||||+|+..++.+++++|++.+  .+.....+..|.||||+|+.
T Consensus         2 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~   81 (228)
T 2dzn_A            2 SNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACS   81 (228)
T ss_dssp             -CCHHHHHHHTTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHHH
T ss_pred             CccHHHHHHHhCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHHHHH
Confidence            67999999999999999999999988765 8899999999999999999999999998  55333378899999999999


Q ss_pred             cCCHHHHHHHHhcCCCcccccCCCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCccCcCCcHHHHHHHcCcHHHHHHHH
Q psy12891        395 QGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMR  474 (567)
Q Consensus       395 ~~~~~~~~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll  474 (567)
                      .++.+++++|++.+.... ....+..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|+.+++++|+
T Consensus        82 ~~~~~~~~~Ll~~g~~~~-~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll  160 (228)
T 2dzn_A           82 VGNLEVVKSLYDRPLKPD-LNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLC  160 (228)
T ss_dssp             HCCHHHHHHHHSSSSCCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred             cCCHHHHHHHHhCCCCcc-cccCCcCCCCHHHHHHHcCCHhHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHH
Confidence            999999999999874332 3344557999999999999999999999999999999999999999999999999999999


Q ss_pred             hcc-cccccccccCCcHHHHHHHcCCHHHHHHHH-hcCCCCCCCCCCCCcccccccCCCCCCCHHHHHHHcCCHHHHHHH
Q psy12891        475 SSK-ALNVYSKKLGVTALHVAAYFGQADTVRELL-SHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVRLL  552 (567)
Q Consensus       475 ~~~-~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll-~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~L  552 (567)
                      +.| ++++.+|..|+||||+|+..|+.+++++|+ +++.+.             +.+|..|.|||++|+..   +++++|
T Consensus       161 ~~g~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~~ga~~-------------~~~~~~g~t~l~~A~~~---~~~~~l  224 (228)
T 2dzn_A          161 GLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEY-------------DLVDNKGAKAEDVALNE---QVKKFF  224 (228)
T ss_dssp             TTTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCS-------------CCBCTTSCBGGGGCSST---THHHHH
T ss_pred             hcCcccccCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCCCC-------------CccCCCCCcHHHHHHHH---HHHHHH
Confidence            999 899999999999999999999999999999 777654             66789999999999654   688888


Q ss_pred             Hhc
Q psy12891        553 LNS  555 (567)
Q Consensus       553 l~~  555 (567)
                      +++
T Consensus       225 ~~~  227 (228)
T 2dzn_A          225 LNN  227 (228)
T ss_dssp             HTT
T ss_pred             Hhc
Confidence            764

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=100.00  E-value=2.7e-38  Score=289.95  Aligned_cols=252  Identities=23%  Similarity=0.219  Sum_probs=174.8

Q ss_pred             cCCCccHHHHHHhcCCHHHHHHHHHhccCcchhhhhhcCCCCCChHHHHHHhcCcHHHHHHHHhCCCCCCccCCCCCCHH
Q psy12891        187 KQNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSAL  266 (567)
Q Consensus       187 ~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l  266 (567)
                      +..|.||||+|+..|+.+++++|++.+.....   ++.++..|.||||+|+..|+.+++++|+++|++++..+..|.|||
T Consensus         6 d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~---~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL   82 (282)
T 1oy3_D            6 TEDGDTALHLAVIHQHEPFLDFLLGFSAGHEY---LDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTAL   82 (282)
T ss_dssp             CTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGG---GGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTSCCHH
T ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHhcCCCccc---ccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHH
Confidence            45568899999999999999999888765322   467788888999999999999999999998888887766555554


Q ss_pred             HHHHHcCCeeeeccccccccccccCCCCCCCCCCCccccchhhhhhhhhhcCCCHHHHHHHcCcHHHHHHHHHcCCCCCC
Q psy12891        267 HLAAEHGYLKVSSGKSLKHSVMSFRLPPHNIIPNGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDA  346 (567)
Q Consensus       267 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~~g~~~~~  346 (567)
                                                                              ++|+..|+.+++++|+++|++...
T Consensus        83 --------------------------------------------------------~~A~~~~~~~~v~~Ll~~~~~~~~  106 (282)
T 1oy3_D           83 --------------------------------------------------------HLACRVRAHTCACVLLQPRPSHPR  106 (282)
T ss_dssp             --------------------------------------------------------HHHTTTTCHHHHHHHSSSCCSSCC
T ss_pred             --------------------------------------------------------HHHHHcCCcchhHhhhccCCCCch
Confidence                                                                    445555677788888877766432


Q ss_pred             c-------------CcCCCCHHHHHHHcCCHHHHHHHHHhCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccc
Q psy12891        347 T-------------DDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVI  413 (567)
Q Consensus       347 ~-------------~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~  413 (567)
                      .             ...+.++++.+...+.......++......++..+..|.||||+|+..|+.+++++|++.+.+.. 
T Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~-  185 (282)
T 1oy3_D          107 DASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLN-  185 (282)
T ss_dssp             CC-----------------------------------CCCGGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTT-
T ss_pred             hhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCC-
Confidence            2             12344555555544433333333322223366778899999999999999999999999887633 


Q ss_pred             ccCCCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCccCcCCcHHHHHHHcCcHHHHHHHHhcccccccccccCCcHHHH
Q psy12891        414 SARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLGVTALHV  493 (567)
Q Consensus       414 ~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~  493 (567)
                       ......|.||||+|+..|+.+++++|+++|++++.++..|+||||+|+..|+.+++++|+++|++++.++..|.|||++
T Consensus       186 -~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~  264 (282)
T 1oy3_D          186 -KPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGAPEPEDGGDKLSPCSS  264 (282)
T ss_dssp             -CCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHTSSCHHHHHHHHHTTCCCCCCC---------
T ss_pred             -CCCCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCcccccCCCCHHHHHHHcCCcHHHHHHHHcCCCcCcCCCcccccccc
Confidence             3333358999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCC
Q psy12891        494 AAYFGQ  499 (567)
Q Consensus       494 A~~~~~  499 (567)
                      |....+
T Consensus       265 a~~~~~  270 (282)
T 1oy3_D          265 SGSDSD  270 (282)
T ss_dssp             ------
T ss_pred             cCCccc
Confidence            986553

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=100.00  E-value=2.2e-37  Score=274.51  Aligned_cols=227  Identities=22%  Similarity=0.213  Sum_probs=208.9

Q ss_pred             CCCCCHHHHHHHcCCeeeeccccccccccccCCCCCCCCCCCccccchhhhhhhhhhcCCCHHHHHHHcCcHHHHHHHHH
Q psy12891        260 QEGRSALHLAAEHGYLKVSSGKSLKHSVMSFRLPPHNIIPNGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLD  339 (567)
Q Consensus       260 ~~~~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~  339 (567)
                      ..+.+||+.|+..|..+.++                      .++......++..+..|.|||++|+..|+.+++++|++
T Consensus         4 ~~~~~~l~~A~~~g~~~~v~----------------------~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~   61 (231)
T 3aji_A            4 CVSNIMICNLAYSGKLDELK----------------------ERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQ   61 (231)
T ss_dssp             CCSSSHHHHHHHHTCHHHHH----------------------HHHHHCGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHH
T ss_pred             ccccchHHHHHHhCCHHHHH----------------------HHHHhchhhhhcCCCCCCCHHHHHHHcCcHHHHHHHHH
Confidence            35678999999999988887                      45555566677888999999999999999999999999


Q ss_pred             cCCCCCCcCcCCCCHHHHHHHcCCHHHHHHHHHhCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccCCCC
Q psy12891        340 LGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRV  419 (567)
Q Consensus       340 ~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~  419 (567)
                      +|++++..+..|.||||+|+..++.+++++|++.+.+ ++..+..|.||||+|+..++.+++++|++.+.+.   ...+.
T Consensus        62 ~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~---~~~~~  137 (231)
T 3aji_A           62 LGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAH-VNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANP---DAKDH  137 (231)
T ss_dssp             TTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT---TCCCT
T ss_pred             hCCCCCCcCCCCCCHHHHHHHcCHHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC---CCcCC
Confidence            9999999999999999999999999999999999877 6788999999999999999999999999987663   34455


Q ss_pred             CCCCHHHHHHHcCcHHHHHHHHHcCCCCCCccCcCCcHHHHHHHcCcHHHHHHHHhcccccccccccCCcHHHHHHHcCC
Q psy12891        420 TEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLGVTALHVAAYFGQ  499 (567)
Q Consensus       420 ~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~  499 (567)
                      .|.||||+|+..|+.+++++|+++|++++.++..|+||||+|+..++.+++++|+++|++++.+|..|+|||++|+..++
T Consensus       138 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~  217 (231)
T 3aji_A          138 YDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVAKGGLG  217 (231)
T ss_dssp             TSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHSCHHHH
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhhHH
Confidence            78999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCC
Q psy12891        500 ADTVRELLSHVPG  512 (567)
Q Consensus       500 ~~~~~~Ll~~~~~  512 (567)
                      .+++++|.+++++
T Consensus       218 ~~i~~lL~~~~a~  230 (231)
T 3aji_A          218 LILKRLAEGEEAS  230 (231)
T ss_dssp             HHHHHHHHHHHHC
T ss_pred             HHHHHHHcccccc
Confidence            9999999987553

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=100.00  E-value=7.1e-38  Score=285.38  Aligned_cols=233  Identities=17%  Similarity=0.216  Sum_probs=199.7

Q ss_pred             hHHHHHHHhcCCCCCCCCCCCChHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCChhHHHHhcCchhHHHHHHHhhhhh
Q psy12891         50 DRCALMLLKSGAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVVDLLIQFVQNI  129 (567)
Q Consensus        50 ~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~~~~~  129 (567)
                      .++.++|.+.  +++.+|.+|+||||+|+..|+.++|++|+++|++++.++  |.||||+|+..|+.+++++|+++|++ 
T Consensus        13 ~~v~~lL~~~--~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~--g~t~L~~A~~~g~~~~v~~Ll~~ga~-   87 (285)
T 3kea_A           13 KQLKSFLSSK--DTFKADVHGHSASYYAIADNNVRLVCTLLNAGALKNLLE--NEFPLHQAATLEDTKIVKILLFSGLD-   87 (285)
T ss_dssp             HHHHHHHHST--TTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTGGGSCCT--TCCHHHHHTTSSSCHHHHHHHHTTCC-
T ss_pred             HHHHHHHHhC--CCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCC--CCCHHHHHHHcCCHHHHHHHHHCCCC-
Confidence            4455555554  688999999999999999999999999999999998884  89999999999999999999999988 


Q ss_pred             hhhHHhhhhcccccccccHHHHHHHhCCcccccccccccHHHHHHHHHcCCCccccccCCCccHHHHHHhcCCHHHHHHH
Q psy12891        130 SQEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGADVSLQTKQNHETAFHYCAVAGNNDVLTGM  209 (567)
Q Consensus       130 ~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L  209 (567)
                              ++.++..|.||||+|+.           .++.+++++|+++|++++..+..++.||||+|+..|+.+++++|
T Consensus        88 --------~~~~d~~g~t~L~~A~~-----------~g~~~~v~~Ll~~ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~L  148 (285)
T 3kea_A           88 --------DSQFDDKGNTALYYAVD-----------SGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYF  148 (285)
T ss_dssp             --------TTCCCTTSCCHHHHHHH-----------TTCHHHHHHHHHHCGGGGGCSSSGGGSHHHHHHHTTCHHHHHHH
T ss_pred             --------CCCcCCCCCcHHHHHHH-----------cCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHH
Confidence                    67889999999999998           45677799999999999977766547999999999999999999


Q ss_pred             HHhccCcchhhhhhcCCC-CCChHHHHHHhcCcHHHHHHHHhCCCCCCccCCCCCCHHHHHHHcCCeeeecccccccccc
Q psy12891        210 LEQMSGTEISKALNKQTS-IGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVSSGKSLKHSVM  288 (567)
Q Consensus       210 l~~~~~~~~~~~~~~~~~-~~~~~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~~~~~~  288 (567)
                      ++.++..        .+. .|.||||+|+..|+.+++++|+++|++++..+..|.||                       
T Consensus       149 l~~g~~~--------~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~-----------------------  197 (285)
T 3kea_A          149 LSEIPST--------FDLAILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIP-----------------------  197 (285)
T ss_dssp             HTTSCTT--------CCCSTHHHHHHHHHHTTCHHHHHHHHHHHHHTCTTCCCBCCT-----------------------
T ss_pred             HhCCCcc--------ccccCCccHHHHHHHcChHHHHHHHHHcCCCCCcccCCCCCh-----------------------
Confidence            9987643        222 78999999999999999999999998888777665543                       


Q ss_pred             ccCCCCCCCCCCCccccchhhhhhhhhhcCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCcCCCCHHHHHHHcCCHHHHH
Q psy12891        289 SFRLPPHNIIPNGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQ  368 (567)
Q Consensus       289 ~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~  368 (567)
                                                      ||++|+..|+.+++++|+++|++++..+.       .|+..++.++++
T Consensus       198 --------------------------------~L~~A~~~~~~~~v~~Ll~~gad~~~~~~-------~a~~~~~~~iv~  238 (285)
T 3kea_A          198 --------------------------------DIKLAIDNKDIEMLQALFKYDINIYSANL-------ENVLLDDAEIAK  238 (285)
T ss_dssp             --------------------------------THHHHHHHTCHHHHHHHTTSCBCSTTTTG-------GGGTTTCHHHHH
T ss_pred             --------------------------------HHHHHHHcCCHHHHHHHHHcCCCCCCCCh-------hhhhcCCHHHHH
Confidence                                            26666667788999999999999988873       557788999999


Q ss_pred             HHHHhCCC
Q psy12891        369 IFLRAHPS  376 (567)
Q Consensus       369 ~Ll~~~~~  376 (567)
                      +|++++.+
T Consensus       239 ~Ll~~g~~  246 (285)
T 3kea_A          239 MIIEKHVE  246 (285)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHcCCC
Confidence            99988755

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=100.00  E-value=3.3e-36  Score=266.44  Aligned_cols=205  Identities=22%  Similarity=0.232  Sum_probs=189.3

Q ss_pred             CCCHHHHHHHcCCHHHHHHHHHhCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCCCCHHHHHHH
Q psy12891        351 GQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAE  430 (567)
Q Consensus       351 g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~t~L~~A~~  430 (567)
                      |.||||.|+..|+.+++++|++.++......+..|.||||+|+..++.+++++|++.+.+.......+..|.||||+|+.
T Consensus         2 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~   81 (228)
T 2dzn_A            2 SNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACS   81 (228)
T ss_dssp             -CCHHHHHHHTTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHHH
T ss_pred             CccHHHHHHHhCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHHHHH
Confidence            68999999999999999999999988777789999999999999999999999999986655555466789999999999


Q ss_pred             cCcHHHHHHHHHcC--CCCCCccCcCCcHHHHHHHcCcHHHHHHHHhcccccccccccCCcHHHHHHHcCCHHHHHHHHh
Q psy12891        431 GGHANVVRVLVKAG--ASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLGVTALHVAAYFGQADTVRELLS  508 (567)
Q Consensus       431 ~~~~~~v~~Ll~~g--~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~  508 (567)
                      .|+.+++++|+++|  ++++..+..|.||||+|+..++.+++++|+++|++++.+|..|+||||+|+..|+.+++++|++
T Consensus        82 ~~~~~~~~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~  161 (228)
T 2dzn_A           82 VGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCG  161 (228)
T ss_dssp             HCCHHHHHHHHSSSSCCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHT
T ss_pred             cCCHHHHHHHHhCCCCcccccCCcCCCCHHHHHHHcCCHhHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHh
Confidence            99999999999999  8999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCCCCCCCcccccccCCCCCCCHHHHHHHcCCHHHHHHHHhccCCccccccccC
Q psy12891        509 HVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVRLLLNSAGVQVDAQTQEN  567 (567)
Q Consensus       509 ~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~g~~~~~~~~~~  567 (567)
                      +++...            +.+|..|.||||+|++.|+.+++++|+++.|+|++.+|.+|
T Consensus       162 ~g~~~~------------~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~~ga~~~~~~~~g  208 (228)
T 2dzn_A          162 LGKSAV------------NWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKG  208 (228)
T ss_dssp             TTCCCS------------CCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCCBCTTS
T ss_pred             cCcccc------------cCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCC
Confidence            984332            56689999999999999999999999955699999999876

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=100.00  E-value=2e-37  Score=282.41  Aligned_cols=240  Identities=18%  Similarity=0.198  Sum_probs=206.7

Q ss_pred             HHhcCCHHHHHHHHHhccCcchhhhhhcCCCCCChHHHHHHhcCcHHHHHHHHhCCCCCCccCCCCCCHHHHHHHcCCee
Q psy12891        197 CAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLK  276 (567)
Q Consensus       197 a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~  276 (567)
                      ++...+.+.+..++...       .++.++..|.||||+|+..|+.+++++|+++|++++..+                 
T Consensus         6 ~i~~~~~~~v~~lL~~~-------~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~-----------------   61 (285)
T 3kea_A            6 RINTWKSKQLKSFLSSK-------DTFKADVHGHSASYYAIADNNVRLVCTLLNAGALKNLLE-----------------   61 (285)
T ss_dssp             TGGGCCHHHHHHHHHST-------TTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTGGGSCCT-----------------
T ss_pred             HHHhcCHHHHHHHHHhC-------CCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCC-----------------
Confidence            34555655555555543       247788889999999999999999999999888776542                 


Q ss_pred             eeccccccccccccCCCCCCCCCCCccccchhhhhhhhhhcCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCcCCCCHHH
Q psy12891        277 VSSGKSLKHSVMSFRLPPHNIIPNGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIH  356 (567)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~  356 (567)
                                                               |.||||+|+..|+.+++++|+++|++++..+..|.||||
T Consensus        62 -----------------------------------------g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~L~  100 (285)
T 3kea_A           62 -----------------------------------------NEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALY  100 (285)
T ss_dssp             -----------------------------------------TCCHHHHHTTSSSCHHHHHHHHTTCCTTCCCTTSCCHHH
T ss_pred             -----------------------------------------CCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcHHH
Confidence                                                     446777777788899999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHhCCCCccccCCCC-CcHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCCCCHHHHHHHcCcHH
Q psy12891        357 VAAQNNFPEVAQIFLRAHPSLVTATTKDG-NTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHAN  435 (567)
Q Consensus       357 ~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~-~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~  435 (567)
                      +|+..++.+++++|++.+++ ++..+..| .||||+|+..++.+++++|++.+......    ..|.||||+|+..|+.+
T Consensus       101 ~A~~~g~~~~v~~Ll~~ga~-~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~----~~g~t~L~~A~~~g~~~  175 (285)
T 3kea_A          101 YAVDSGNMQTVKLFVKKNWR-LMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDL----AILLSCIHITIKNGHVD  175 (285)
T ss_dssp             HHHHTTCHHHHHHHHHHCGG-GGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTTCCC----STHHHHHHHHHHTTCHH
T ss_pred             HHHHcCCHHHHHHHHhcCCC-CCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCccccc----cCCccHHHHHHHcChHH
Confidence            99999999999999999877 67888888 79999999999999999999987654211    27889999999999999


Q ss_pred             HHHHHHHcCCCCCCccCcCCcH-HHHHHHcCcHHHHHHHHhcccccccccccCCcHHHHHHHcCCHHHHHHHHhcCCCC
Q psy12891        436 VVRVLVKAGASCTDENKTGFTA-VHLAAQNGHNQVLEEMRSSKALNVYSKKLGVTALHVAAYFGQADTVRELLSHVPGT  513 (567)
Q Consensus       436 ~v~~Ll~~g~~~~~~~~~g~t~-l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~  513 (567)
                      ++++|+++|++++.++..|+|| ||+|+..|+.+++++|+++|++++.++.       .|+..|+.+++++|++++.+.
T Consensus       176 ~v~~Ll~~gad~n~~~~~g~t~~L~~A~~~~~~~~v~~Ll~~gad~~~~~~-------~a~~~~~~~iv~~Ll~~g~~~  247 (285)
T 3kea_A          176 MMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDIEMLQALFKYDINIYSANL-------ENVLLDDAEIAKMIIEKHVEY  247 (285)
T ss_dssp             HHHHHHHHHHHTCTTCCCBCCTTHHHHHHHTCHHHHHHHTTSCBCSTTTTG-------GGGTTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCh-------hhhhcCCHHHHHHHHHcCCCC
Confidence            9999999999999999999998 9999999999999999999999998873       567799999999999987654

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=100.00  E-value=1.2e-35  Score=261.85  Aligned_cols=208  Identities=24%  Similarity=0.219  Sum_probs=192.8

Q ss_pred             cccchhhhhhhh-hhcCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCcCCCCHHHHHHHcCCHHHHHHHHHhCCCCcccc
Q psy12891        303 LVHDHAAVIDIL-TLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTAT  381 (567)
Q Consensus       303 ll~~~~~~~~~~-~~~~~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~  381 (567)
                      .+.+.+.+++.. +..|.|||++|+..|+.+++++|+++|++++..+..|.||||+|+..++.+++++|++.++...+..
T Consensus         9 ~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~   88 (223)
T 2f8y_A            9 DFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDAR   88 (223)
T ss_dssp             TTEETTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHBTTSCTTCC
T ss_pred             HHHHcCCCcccccCCCCCchHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccC
Confidence            445556666554 7899999999999999999999999999999999999999999999999999999999998778889


Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCccCcCCcHHHHH
Q psy12891        382 TKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLA  461 (567)
Q Consensus       382 ~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A  461 (567)
                      +..|.||||+|+..++.+++++|++.+.+.   ...+..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|
T Consensus        89 ~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~---~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A  165 (223)
T 2f8y_A           89 MHDGTTPLILAARLAVEGMLEDLINSHADV---NAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLA  165 (223)
T ss_dssp             CTTCCCHHHHHHHHTCHHHHHHHHHTTCCT---TCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHH
T ss_pred             CCCCCcHHHHHHHhCcHHHHHHHHHcCCCC---cCcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCcCHHHHH
Confidence            999999999999999999999999987663   33445799999999999999999999999999999999999999999


Q ss_pred             HHcCcHHHHHHHHhcccccccccccCCcHHHHHHHcCCHHHHHHHHhcCCCC
Q psy12891        462 AQNGHNQVLEEMRSSKALNVYSKKLGVTALHVAAYFGQADTVRELLSHVPGT  513 (567)
Q Consensus       462 ~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~  513 (567)
                      +..|+.+++++|+++|++++.+|..|.|||++|+..++.+++++|++++...
T Consensus       166 ~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~L~~~g~~~  217 (223)
T 2f8y_A          166 AREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDEYNLVR  217 (223)
T ss_dssp             HHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCSS
T ss_pred             HHcCCHHHHHHHHHcCCCCccccccCCCHHHHHHHhcchHHHHHHHHcCCCc
Confidence            9999999999999999999999999999999999999999999999987653

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=100.00  E-value=1.6e-37  Score=287.20  Aligned_cols=246  Identities=23%  Similarity=0.312  Sum_probs=174.2

Q ss_pred             ChHHHHHHhcCcHHHHHHHHhCCCCCCccCCCCCCHHHHHHHcCCeeeeccccccccccccCCCCCCCCCCCccccchhh
Q psy12891        230 WTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVSSGKSLKHSVMSFRLPPHNIIPNGFLVHDHAA  309 (567)
Q Consensus       230 ~~~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~  309 (567)
                      .|||+.|+..|+.+++++|+++|++++..+..|.||||+|+..|+.++++                       ++.+.+.
T Consensus        41 ~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~-----------------------~Ll~~ga   97 (299)
T 1s70_B           41 GAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVK-----------------------FLVENGA   97 (299)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHCCCTTCBCTTCCBHHHHHHHTTCHHHHH-----------------------HHHHTTC
T ss_pred             ccHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHH-----------------------HHHHCCC
Confidence            34444444444444444444444444444444444444444444444443                       3333334


Q ss_pred             hhhhhhhcCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCcCCCCHHHHHHHcCCHHHHHHHHHhCCCCccccCCCCCcHH
Q psy12891        310 VIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCA  389 (567)
Q Consensus       310 ~~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~l  389 (567)
                      +++..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..+..++++.++.............+.+++
T Consensus        98 ~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~  177 (299)
T 1s70_B           98 NINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIM  177 (299)
T ss_dssp             CTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred             CCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHH
Confidence            44444445667777777788899999999999999999999999999999999999999888765543332222222222


Q ss_pred             HHHHHcCCHHHHHHHHhcCCCcccccCCCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCccCcCCcHHHHHHHcCcHHH
Q psy12891        390 HIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQV  469 (567)
Q Consensus       390 ~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~  469 (567)
                              ...+..++..+..  .....+..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.++
T Consensus       178 --------~~~~~~~l~~~~~--~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpL~~A~~~~~~~~  247 (299)
T 1s70_B          178 --------LRDARQWLNSGHI--NDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEA  247 (299)
T ss_dssp             --------HHHHHHHHHHTCC--CCCCCTTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHH
T ss_pred             --------HHHHHHHHhccCc--chhhhcCCCCCHHHHHHHCCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHhcCCHHH
Confidence                    2334445544433  233445578999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcccccccccccCCcHHHHHHHcCCHHHHHHHHhc
Q psy12891        470 LEEMRSSKALNVYSKKLGVTALHVAAYFGQADTVRELLSH  509 (567)
Q Consensus       470 v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~  509 (567)
                      +++|+++|++++.+|..|+||||+|+. +..+.++.|++.
T Consensus       248 v~~Ll~~gad~~~~d~~g~t~l~~A~~-~~~~~l~~l~~~  286 (299)
T 1s70_B          248 CRILVENLCDMEAVNKVGQTAFDVADE-DILGYLEELQKK  286 (299)
T ss_dssp             HHHHHHTTCCTTCCCTTSCCTTTSCCS-GGGHHHHHHHHH
T ss_pred             HHHHHHcCCCCCCcCCCCCCHHHHHHH-HHHHHHHHHHHH
Confidence            999999999999999999999999975 456666666665

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=100.00  E-value=1.4e-35  Score=265.03  Aligned_cols=229  Identities=20%  Similarity=0.215  Sum_probs=147.9

Q ss_pred             cCCCCCChHHHHHHhcCcHHHHHHHHhCCCCCCccCCCCCCHHHHHHHcCCeeeeccccccccccccCCCCCCCCCCCcc
Q psy12891        224 KQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVSSGKSLKHSVMSFRLPPHNIIPNGFL  303 (567)
Q Consensus       224 ~~~~~~~~~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  303 (567)
                      ..+..+.++|+.|+..|+.+++++|++.|++++..+..|.|                                       
T Consensus         4 ~~d~~~~~~l~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t---------------------------------------   44 (240)
T 3eu9_A            4 HIDDYSTWDIVKATQYGIYERCRELVEAGYDVRQPDKENVT---------------------------------------   44 (240)
T ss_dssp             CCSCGGGCCHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCC---------------------------------------
T ss_pred             ccccccchHHHHHHHcCChHHHHHHHHcCCCcCCCCCCCCC---------------------------------------
Confidence            34555666777777777777777777766666655544333                                       


Q ss_pred             ccchhhhhhhhhhcCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCc-CCCCHHHHHHHcCCHHHHHHHHHhCCCCccccC
Q psy12891        304 VHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDD-QGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATT  382 (567)
Q Consensus       304 l~~~~~~~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~-~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~  382 (567)
                                       ||+.|+..|+.+++++|+++|++++..+. .|.|||++|+..++.+++++|++.+.+ .+..+
T Consensus        45 -----------------~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~  106 (240)
T 3eu9_A           45 -----------------LLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGAD-PSLID  106 (240)
T ss_dssp             -----------------HHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBCHHHHHHHHTCHHHHHHHHHTTCC-TTCCC
T ss_pred             -----------------HHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCChhHHHHHcCCHHHHHHHHHcCCC-CcccC
Confidence                             33444444556666666666666554433 366666666666666666666665544 34555


Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCCCCHHHHHHHcCc-HHHHHHHHHcCCCCCCccC-cCCcHHHH
Q psy12891        383 KDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGH-ANVVRVLVKAGASCTDENK-TGFTAVHL  460 (567)
Q Consensus       383 ~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~~~-~~~v~~Ll~~g~~~~~~~~-~g~t~l~~  460 (567)
                      ..|.||||.|+..++.+++++|++.+.+.   ...+..|.||||+|+..++ .+++++|++.|++++..+. .|.||||+
T Consensus       107 ~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~---~~~~~~g~t~l~~a~~~~~~~~~~~~L~~~~~~~~~~~~~~g~t~L~~  183 (240)
T 3eu9_A          107 GEGCSCIHLAAQFGHTSIVAYLIAKGQDV---DMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHW  183 (240)
T ss_dssp             TTSCCHHHHHHHTTCHHHHHHHHHTTCCT---TCCCTTSCCHHHHHHHHCCSSTTHHHHHHTTCCTTCCCTTTCCCHHHH
T ss_pred             CCCCCHHHHHHHcCHHHHHHHHHhcCCCc---cccCCCCCcHHHHHHHhCChHHHHHHHHhcCCCcchhhccCCCcHHHH
Confidence            56666666666666666666666654432   2333456677777775544 6777777777777777665 77777777


Q ss_pred             HHHcCcHHHHHHHHhcccccccccccCCcHHHHHHHcCCHHHHHHHHhcCCC
Q psy12891        461 AAQNGHNQVLEEMRSSKALNVYSKKLGVTALHVAAYFGQADTVRELLSHVPG  512 (567)
Q Consensus       461 A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~  512 (567)
                      |+..|+.+++++|+++|++++.+|..|+|||++|+..++.+++++|++.++.
T Consensus       184 A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~L~~~~~~  235 (240)
T 3eu9_A          184 AVLAGNTTVISLLLEAGANVDAQNIKGESALDLAKQRKNVWMINHLQEARQA  235 (240)
T ss_dssp             HHHHTCHHHHHHHHHHTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHHC--
T ss_pred             HHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHhhhc
Confidence            7777777777777777777777777777777777777777777777776554

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=100.00  E-value=3.9e-36  Score=267.05  Aligned_cols=219  Identities=21%  Similarity=0.172  Sum_probs=191.6

Q ss_pred             hhhhcCCCHHHHHHHcCcHHHHHHHHHcCC----CCCCcCcCCCCHHHHHHHcCCHHHHHHHHHhCCCCccccCCCCCcH
Q psy12891        313 ILTLRKQTPLHLAAEAGQLQVCKLLLDLGA----SIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTC  388 (567)
Q Consensus       313 ~~~~~~~t~L~~a~~~~~~~~v~~Ll~~g~----~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~  388 (567)
                      ..+..|.||||+|+..|+.+++++|++.+.    +++..+..|.||||+|+..++.+++++|++.+.+ ++..+..|.||
T Consensus         3 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~   81 (236)
T 1ikn_D            3 QLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCD-PELRDFRGNTP   81 (236)
T ss_dssp             ----CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCC-SCCCCTTCCCH
T ss_pred             cCCCCCCchhHHHHHcCChhHHHHHHHHhhccHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCH
Confidence            457789999999999999999999998765    7899999999999999999999999999998877 67889999999


Q ss_pred             HHHHHHcCCHHHHHHHHhcCCCc---ccccCCCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCccC-cCCcHHHHHHHc
Q psy12891        389 AHIAAMQGSVGVIEELMKFDRSG---VISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENK-TGFTAVHLAAQN  464 (567)
Q Consensus       389 l~~a~~~~~~~~~~~ll~~~~~~---~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~-~g~t~l~~A~~~  464 (567)
                      ||+|+..++.+++++|++.+...   ......+..|.||||+|+..|+.+++++|+++|++++..+. .|.||||+|+..
T Consensus        82 L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~  161 (236)
T 1ikn_D           82 LHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDL  161 (236)
T ss_dssp             HHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHT
T ss_pred             HHHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHc
Confidence            99999999999999999987653   23455666899999999999999999999999999999997 999999999999


Q ss_pred             CcHHHHHHHHhcccccccccccCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcccccccCCCCCCCHHHHHHHc
Q psy12891        465 GHNQVLEEMRSSKALNVYSKKLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYS  543 (567)
Q Consensus       465 ~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~  543 (567)
                      |+.+++++|+++|++++.+|..|+||||+|+..++.+++++|++++++...           ..++..|.||.+.+...
T Consensus       162 ~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~~-----------~~~~~~~~~~~~~~~~~  229 (236)
T 1ikn_D          162 QNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQ-----------MLPESEDEESYDTESEF  229 (236)
T ss_dssp             TCHHHHHHHHTTTCCSCCCCTTCCCGGGGCTTSSCHHHHHHHHTTSCGGGS-----------SCCCCCTTTCCCCC---
T ss_pred             CCHHHHHHHHHcCCCCCcccCCCCCHHHHHHccCchHHHHHHHHcchhhhh-----------cCCccchHHHHhhhccc
Confidence            999999999999999999999999999999999999999999999876532           45677788887665443

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=100.00  E-value=4.4e-35  Score=270.76  Aligned_cols=249  Identities=25%  Similarity=0.279  Sum_probs=178.5

Q ss_pred             CCCChHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCChhHHHHhcCchhHHHHHHHhhhhhhhhHHhhhhccccccccc
Q psy12891         68 DDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVVDLLIQFVQNISQEKVLEYVNSVNEDGAS  147 (567)
Q Consensus        68 ~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~t  147 (567)
                      .+|.||||.||..|+.++|++|+++|++++..+..|.||||+|+..|+.+++++|+++|++         ++..+..|.|
T Consensus        38 ~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~---------~~~~~~~g~t  108 (299)
T 1s70_B           38 FDDGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGAN---------INQPDNEGWI  108 (299)
T ss_dssp             ECHHHHHHHHHHHTCHHHHHHHHHHCCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCC---------TTCCCTTSCC
T ss_pred             cCCccHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCC---------CCCCCCCCCc
Confidence            3567899999999999999999999999999999999999999999999999999998877         6777888999


Q ss_pred             HHHHHHHhCCcccccccccccHHHHHHHHHcCCCccccccCCCccHHHHHHhcCCHHHHHHHHHhccCcchhhhhhcCCC
Q psy12891        148 ALHYACQVTKAELIPITSKEDQKTVKLLLEAGADVSLQTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTS  227 (567)
Q Consensus       148 ~L~~a~~~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~  227 (567)
                      |||+|+..           ++.+++++|+++|++++..+.. |.|||++|+..++.+++++++.......     +....
T Consensus       109 pL~~A~~~-----------g~~~~v~~Ll~~g~~~~~~~~~-g~t~l~~A~~~~~~~~~~~ll~~~~~~~-----~~~~~  171 (299)
T 1s70_B          109 PLHAAASC-----------GYLDIAEYLISQGAHVGAVNSE-GDTPLDIAEEEAMEELLQNEVNRQGVDI-----EAARK  171 (299)
T ss_dssp             HHHHHHHH-----------TCHHHHHHHHHTTCCTTCCCTT-SCCHHHHCCSHHHHHHHHHHHHHHTCCH-----HHHHH
T ss_pred             HHHHHHHc-----------CCHHHHHHHHhCCCCCCCcCCC-CCCHHHHHHhcchHHHHHHHHhhcCCCc-----hhhhh
Confidence            99999884           4566789999999888866544 4888888888888888888876532110     00000


Q ss_pred             CCChHHHHHHhcCcHHHHHHHHhCCCCCCccCCCCCCHHHHHHHcCCeeeeccccccccccccCCCCCCCCCCCccccch
Q psy12891        228 IGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVSSGKSLKHSVMSFRLPPHNIIPNGFLVHDH  307 (567)
Q Consensus       228 ~~~~~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~  307 (567)
                      .+.+++        ...++.++..+.....                                                  
T Consensus       172 ~~~~~~--------~~~~~~~l~~~~~~~~--------------------------------------------------  193 (299)
T 1s70_B          172 EEERIM--------LRDARQWLNSGHINDV--------------------------------------------------  193 (299)
T ss_dssp             HHHHHH--------HHHHHHHHHHTCCCCC--------------------------------------------------
T ss_pred             hhhhHH--------HHHHHHHHhccCcchh--------------------------------------------------
Confidence            011111        1222333333222111                                                  


Q ss_pred             hhhhhhhhhcCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCcCCCCHHHHHHHcCCHHHHHHHHHhCCCCccccCCCCCc
Q psy12891        308 AAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNT  387 (567)
Q Consensus       308 ~~~~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~  387 (567)
                           ..+..|.||||+|+..|+.+++++|+++|++++..|..|.||||+|+..++.+++++|++.+++ ++..+..|.|
T Consensus       194 -----~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~gad-~~~~d~~g~t  267 (299)
T 1s70_B          194 -----RHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCD-MEAVNKVGQT  267 (299)
T ss_dssp             -----CCTTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCC
T ss_pred             -----hhcCCCCCHHHHHHHCCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHhcCCHHHHHHHHHcCCC-CCCcCCCCCC
Confidence                 1123466777777777788888888888888888888888888888888888888888887766 5677788888


Q ss_pred             HHHHHHHcCCHHHHHHHHhc
Q psy12891        388 CAHIAAMQGSVGVIEELMKF  407 (567)
Q Consensus       388 ~l~~a~~~~~~~~~~~ll~~  407 (567)
                      |+++|+.. ..+.++.+++.
T Consensus       268 ~l~~A~~~-~~~~l~~l~~~  286 (299)
T 1s70_B          268 AFDVADED-ILGYLEELQKK  286 (299)
T ss_dssp             TTTSCCSG-GGHHHHHHHHH
T ss_pred             HHHHHHHH-HHHHHHHHHHH
Confidence            88887553 44555555443

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=100.00  E-value=3.1e-35  Score=273.50  Aligned_cols=232  Identities=16%  Similarity=0.178  Sum_probs=186.7

Q ss_pred             cCCCCCChhhHHhhcCChhHHHHHHhhcCCCCChhhh------------------------HhhhcCchHHHHHHHhcCC
Q psy12891          6 SGKLRETPLHIAARVKDGDRCALMLLKSGAGPNLTNI------------------------AARVKDGDRCALMLLKSGA   61 (567)
Q Consensus         6 ~~~~~~t~L~~A~~~g~~~~v~~~L~~~g~~~~~~~~------------------------~a~~~~~~~~~~~Ll~~g~   61 (567)
                      .+..|.|+++     |+.+ ++++|+++|++++....                        .+......+++++|++.|+
T Consensus        48 ~~~~g~~~~~-----g~~~-~v~~Ll~~g~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~g~  121 (327)
T 1sw6_A           48 ALPSPVVNDN-----EQKM-KLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQL  121 (327)
T ss_dssp             CBCCCCCCCH-----HHHH-HHHHHHHHHHC-------------------------------CHHHHHHHHHHHCTTSCC
T ss_pred             CCCCCCcccC-----chhH-HHHHHHHhccCCccccchHhhhcccccccccccCCccchhHHHHHhhHHHHHHHHHhcCC
Confidence            4578899987     8887 66779999998886432                        2344445688999999999


Q ss_pred             CCCC-CCCCCChHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCChhHHHHhcCc---hhHHHHHHHhhhhhhhhHHhhh
Q psy12891         62 GPNL-TTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCK---AEVVDLLIQFVQNISQEKVLEY  137 (567)
Q Consensus        62 ~~~~-~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~~~---~~iv~~Ll~~~~~~~~~~~~~~  137 (567)
                      ++|. ++.+|+||||+||..|+.++|++|+++|++++.+|..|+||||+|+..|+   .++++.|++++..        .
T Consensus       122 dvn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~n~~d~~g~TpLh~A~~~g~~~~~~~~~~ll~~~~~--------~  193 (327)
T 1sw6_A          122 NLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYP--------C  193 (327)
T ss_dssp             CSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGG--------G
T ss_pred             CcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhcccccHHHHHHHHHhhhc--------c
Confidence            9999 89999999999999999999999999999999999999999999999999   8999999998743        1


Q ss_pred             hcccccccccHHHHHHHhCCcccccccccccHHHHHHHHHc--------------------CCCccccccCCCccHHHHH
Q psy12891        138 VNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEA--------------------GADVSLQTKQNHETAFHYC  197 (567)
Q Consensus       138 ~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~~~v~~Ll~~--------------------g~~~~~~~~~~~~~~l~~a  197 (567)
                      ++.++..|.||||+|+..+..       .++.+++++|++.                    |++++..+.. +.||||+|
T Consensus       194 ~~~~d~~g~tpLh~A~~~~~~-------~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~-g~t~L~~a  265 (327)
T 1sw6_A          194 LILEDSMNRTILHHIIITSGM-------TGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGE-RKDSILEN  265 (327)
T ss_dssp             GGEECTTCCCHHHHHHHHHTS-------TTCHHHHHHHHHHHHHHHHHGGGCCEEEC-----------------CHHHHH
T ss_pred             ccCCCCCCCCHHHHHHHHccc-------cccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCccccccc-CCChhHHH
Confidence            788999999999999983321       3567779999887                    8888876654 59999999


Q ss_pred             HhcCCHHHHHHHHHhccCcchhhhhhcCCCCCChHHHHHHhcCcHHHHHHHHhCCCCCCccCCCCCCHHHHHHHcC
Q psy12891        198 AVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHG  273 (567)
Q Consensus       198 ~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~  273 (567)
                      +.      +++|++..        ++.++..|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|
T Consensus       266 ~~------~~~Ll~~~--------~n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~~~g  327 (327)
T 1sw6_A          266 LD------LKWIIANM--------LNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFGAGLE  327 (327)
T ss_dssp             CS------HHHHHHHT--------TTCCCTTSCCHHHHHHHHCCHHHHHHHHHTTCCTTCCCTTSCCGGGGTCC--
T ss_pred             HH------HHHHHHhC--------CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHhcC
Confidence            85      88888872        5788999999999999999999999999999999999999999999998654

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=100.00  E-value=2.5e-36  Score=280.80  Aligned_cols=271  Identities=14%  Similarity=0.120  Sum_probs=199.4

Q ss_pred             cCCHHHHHHHHHhccCcchhhhhhcCCCCCChHHHHHHhcCcHHHHHHHHhCCCCCCccCCCCCCHHHHHHHcCCeeeec
Q psy12891        200 AGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVSS  279 (567)
Q Consensus       200 ~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~  279 (567)
                      ....+++++|++.+.+.      +..+..|.++++     |+.+++++|+++|++++.      +++++|+........ 
T Consensus        29 ~~~~dlv~~ll~~ga~i------~~~~~~g~~~~~-----g~~~~v~~Ll~~g~~~~~------~~~~~a~~~~~~~~~-   90 (327)
T 1sw6_A           29 TFTHDLTSDFLSSPLKI------MKALPSPVVNDN-----EQKMKLEAFLQRLLFPEI------QEMPTSLNNDSSNRN-   90 (327)
T ss_dssp             ECCTTCCCSTTTSSCCC------EECBCCCCCCCH-----HHHHHHHHHHHHHHC-------------------------
T ss_pred             hhcCchHHHHhhCCccc------ccCCCCCCcccC-----chhHHHHHHHHhccCCcc------ccchHhhhccccccc-
Confidence            57778888998887654      567788888876     889999999999987543      345555443100000 


Q ss_pred             cccccccccccCCCCCCCCCCCccccchhhhhhhhhhcCCCHHHHHHHcCcHHHHHHHHHcCCCCCC-cCcCCCCHHHHH
Q psy12891        280 GKSLKHSVMSFRLPPHNIIPNGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDA-TDDQGQKPIHVA  358 (567)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~~g~~~~~-~~~~g~t~L~~A  358 (567)
                                                      ........+.++.++..+..+++++|++.|++++. .+..|.||||+|
T Consensus        91 --------------------------------~~~~~~~~~~~~~a~~~~~~~~~~~l~~~g~dvn~~~d~~g~TpLh~A  138 (327)
T 1sw6_A           91 --------------------------------SEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWL  138 (327)
T ss_dssp             ---------------------------------------------CHHHHHHHHHHHCTTSCCCSCSCCSTTCCCHHHHH
T ss_pred             --------------------------------ccccCCccchhHHHHHhhHHHHHHHHHhcCCCcccccCCCCCcHHHHH
Confidence                                            00001122446788888889999999999999999 899999999999


Q ss_pred             HHcCCHHHHHHHHHhCCCCccccCCCCCcHHHHHHHcCC---HHHHHHHHhcCCCcccccCCCCCCCCHHHHHHH----c
Q psy12891        359 AQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGS---VGVIEELMKFDRSGVISARNRVTEATPLQLAAE----G  431 (567)
Q Consensus       359 ~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~---~~~~~~ll~~~~~~~~~~~~~~~~~t~L~~A~~----~  431 (567)
                      +..|+.+++++|++.+++ ++..+..|+||||+|+..|+   .++++.|++.+..  .....+..|.||||+|+.    .
T Consensus       139 a~~g~~~~v~~Ll~~Gad-~n~~d~~g~TpLh~A~~~g~~~~~~~~~~ll~~~~~--~~~~~d~~g~tpLh~A~~~~~~~  215 (327)
T 1sw6_A          139 TSIANLELVKHLVKHGSN-RLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYP--CLILEDSMNRTILHHIIITSGMT  215 (327)
T ss_dssp             HHTTCHHHHHHHHHTTCC-TTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGG--GGGEECTTCCCHHHHHHHHHTST
T ss_pred             HHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHhcccccHHHHHHHHHhhhc--cccCCCCCCCCHHHHHHHHcccc
Confidence            999999999999999877 68899999999999999988   5667777765432  244556689999999999    8


Q ss_pred             CcHHHHHHHHHc--------------------CCCCCCccCcCCcHHHHHHHcCcHHHHHHHHhcccccccccccCCcHH
Q psy12891        432 GHANVVRVLVKA--------------------GASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLGVTAL  491 (567)
Q Consensus       432 ~~~~~v~~Ll~~--------------------g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l  491 (567)
                      |+.+++++|++.                    |++++..+..|.||||+|+.      +++|+++  +++.+|..|+|||
T Consensus       216 g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~g~t~L~~a~~------~~~Ll~~--~~n~~d~~G~TpL  287 (327)
T 1sw6_A          216 GCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLD------LKWIIAN--MLNAQDSNGDTCL  287 (327)
T ss_dssp             TCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCS------HHHHHHH--TTTCCCTTSCCHH
T ss_pred             ccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCcccccccCCChhHHHHH------HHHHHHh--CCCCCCCCCCCHH
Confidence            999999999987                    89999999999999999986      8999998  5888999999999


Q ss_pred             HHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcccccccCCCCCCCHHHHHHHcC
Q psy12891        492 HVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSG  544 (567)
Q Consensus       492 ~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~  544 (567)
                      |+|+..|+.+++++|++++++.             +.+|..|.||||+|+++|
T Consensus       288 h~A~~~g~~~~v~~Ll~~Gad~-------------~~~d~~G~TpL~~A~~~g  327 (327)
T 1sw6_A          288 NIAARLGNISIVDALLDYGADP-------------FIANKSGLRPVDFGAGLE  327 (327)
T ss_dssp             HHHHHHCCHHHHHHHHHTTCCT-------------TCCCTTSCCGGGGTCC--
T ss_pred             HHHHHcCCHHHHHHHHHcCCCC-------------cccCCCCCCHHHHHHhcC
Confidence            9999999999999999998865             677899999999998765

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=100.00  E-value=6.7e-33  Score=239.84  Aligned_cols=192  Identities=20%  Similarity=0.237  Sum_probs=178.2

Q ss_pred             hcCCCHHHHHHHcCcHHHHHHHHHcCC-CCCCcCcCCCCHHHHHHHcCCHHHHHHHHHhCCCCccccCCCCCcHHHHHHH
Q psy12891        316 LRKQTPLHLAAEAGQLQVCKLLLDLGA-SIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAM  394 (567)
Q Consensus       316 ~~~~t~L~~a~~~~~~~~v~~Ll~~g~-~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~  394 (567)
                      ..+.|||+.|+..|+.+.++.|++.+. +++..+..|.||||+|+..++.+++++|++.+.+ ++..+..|.||||+|+.
T Consensus         3 ~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~l~~A~~   81 (201)
T 3hra_A            3 TYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGAD-INLQNSISDSPYLYAGA   81 (201)
T ss_dssp             CCCTTHHHHHHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHH
T ss_pred             cccccHHHHHHHhccHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHH
Confidence            457899999999999999999999876 9999999999999999999999999999999887 67889999999999999


Q ss_pred             cCCHHHHHHHHhcCCCcccccCCCCCCCCHHHHHHHcCcHHHHHHHHHcC-CCCCCccCcCCcHHHHHHHcCc-----HH
Q psy12891        395 QGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAG-ASCTDENKTGFTAVHLAAQNGH-----NQ  468 (567)
Q Consensus       395 ~~~~~~~~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~t~l~~A~~~~~-----~~  468 (567)
                      .++.+++++|++.+..  .....+..|.||||+|+..|+.+++++|+++| ++++.++..|+||||+|+..++     .+
T Consensus        82 ~~~~~~~~~Ll~~~~~--~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~  159 (201)
T 3hra_A           82 QGRTEILAYMLKHATP--DLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQD  159 (201)
T ss_dssp             TTCHHHHHHHHHHSCC--CTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHH
T ss_pred             cCCHHHHHHHHhccCc--ccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhhHHH
Confidence            9999999999965432  34455568999999999999999999999999 9999999999999999999998     99


Q ss_pred             HHHHHHhcccccccccccCCcHHHHHHHcCCHHHHHHHHhcC
Q psy12891        469 VLEEMRSSKALNVYSKKLGVTALHVAAYFGQADTVRELLSHV  510 (567)
Q Consensus       469 ~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~  510 (567)
                      ++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|
T Consensus       160 ~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~G  201 (201)
T 3hra_A          160 IVKLLMENGADQSIKDNSGRTAMDYANQKGYTEISKILAQYN  201 (201)
T ss_dssp             HHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHTCC
T ss_pred             HHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHhHHHHHHhcC
Confidence            999999999999999999999999999999999999999874

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=100.00  E-value=1.4e-34  Score=257.05  Aligned_cols=217  Identities=23%  Similarity=0.378  Sum_probs=186.4

Q ss_pred             ccCCCCCCHHHHHHHcCCeeeeccccccccccccCCCCCCCCCCCccccchh---hhhhhhhhcCCCHHHHHHHcCcHHH
Q psy12891        257 VFDQEGRSALHLAAEHGYLKVSSGKSLKHSVMSFRLPPHNIIPNGFLVHDHA---AVIDILTLRKQTPLHLAAEAGQLQV  333 (567)
Q Consensus       257 ~~~~~~~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~---~~~~~~~~~~~t~L~~a~~~~~~~~  333 (567)
                      ..|..|.||||+|+..|+.++++                      +++....   .+++..+..|.||||+|+..|+.++
T Consensus         3 ~~d~~g~t~L~~A~~~g~~~~v~----------------------~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~   60 (236)
T 1ikn_D            3 QLTEDGDSFLHLAIIHEEKALTM----------------------EVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEI   60 (236)
T ss_dssp             ----CCCCTTHHHHHTTCSSSSS----------------------CCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHH
T ss_pred             cCCCCCCchhHHHHHcCChhHHH----------------------HHHHHhhccHHHhhccCCCCCCHHHHHHHcCCHHH
Confidence            46788999999999999998887                      2322222   2578888999999999999999999


Q ss_pred             HHHHHHcCCCCCCcCcCCCCHHHHHHHcCCHHHHHHHHHhCCC-----CccccCCCCCcHHHHHHHcCCHHHHHHHHhcC
Q psy12891        334 CKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPS-----LVTATTKDGNTCAHIAAMQGSVGVIEELMKFD  408 (567)
Q Consensus       334 v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~-----~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~  408 (567)
                      +++|+++|++++..+..|.||||+|+..++.+++++|++.+..     .....+..|.||||+|+..++.+++++|++.+
T Consensus        61 v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g  140 (236)
T 1ikn_D           61 AEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLG  140 (236)
T ss_dssp             HHCCCSCCCCSCCCCTTCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHT
T ss_pred             HHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence            9999999999999999999999999999999999999998753     25677889999999999999999999999988


Q ss_pred             CCcccccCCCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCccCcCCcHHHHHHHcCcHHHHHHHHhcccccc--ccccc
Q psy12891        409 RSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNV--YSKKL  486 (567)
Q Consensus       409 ~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~--~~~~~  486 (567)
                      .+..  ......|.||||+|+..|+.+++++|+++|++++.++..|.|||++|+..++.+++++|+++|+++.  ..+..
T Consensus       141 ~~~~--~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~  218 (236)
T 1ikn_D          141 ADVN--AQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPESE  218 (236)
T ss_dssp             CCTT--CCCTTTCCCHHHHHHHTTCHHHHHHHHTTTCCSCCCCTTCCCGGGGCTTSSCHHHHHHHHTTSCGGGSSCCCCC
T ss_pred             CCCC--CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccCCCCCHHHHHHccCchHHHHHHHHcchhhhhcCCccc
Confidence            7633  2222378999999999999999999999999999999999999999999999999999999999776  77788


Q ss_pred             CCcHHHHHHHc
Q psy12891        487 GVTALHVAAYF  497 (567)
Q Consensus       487 g~t~l~~A~~~  497 (567)
                      |.|+++.+...
T Consensus       219 ~~~~~~~~~~~  229 (236)
T 1ikn_D          219 DEESYDTESEF  229 (236)
T ss_dssp             TTTCCCCC---
T ss_pred             hHHHHhhhccc
Confidence            88887766544

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=100.00  E-value=2e-34  Score=262.00  Aligned_cols=222  Identities=19%  Similarity=0.201  Sum_probs=153.7

Q ss_pred             hhhhhcCCCHHHHHHHcCcHHHHHHHHH----cCCCCC----CcCcCCCCHHHHHHHc---CCHHHHHHHHHhCCCCccc
Q psy12891        312 DILTLRKQTPLHLAAEAGQLQVCKLLLD----LGASID----ATDDQGQKPIHVAAQN---NFPEVAQIFLRAHPSLVTA  380 (567)
Q Consensus       312 ~~~~~~~~t~L~~a~~~~~~~~v~~Ll~----~g~~~~----~~~~~g~t~L~~A~~~---~~~~~~~~Ll~~~~~~~~~  380 (567)
                      +..+..|.|||+.|+..|+.++|+.|++    .+++++    ..+..|.||||+|+..   ++.+++++|++.++...  
T Consensus         7 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~--   84 (273)
T 2pnn_A            7 KPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTD--   84 (273)
T ss_dssp             ----CCCHHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTT--
T ss_pred             CCCCcccchHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhcccc--
Confidence            3445555556666666555555555444    344443    2344555555555544   55555555555433210  


Q ss_pred             cCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCccC--------
Q psy12891        381 TTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENK--------  452 (567)
Q Consensus       381 ~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~--------  452 (567)
                                         .++.++..     .....+..|.||||+|+..|+.+++++|+++|++++..+.        
T Consensus        85 -------------------~~~~~i~~-----~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~  140 (273)
T 2pnn_A           85 -------------------SLKQFVNA-----SYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTK  140 (273)
T ss_dssp             -------------------CHHHHHTC-----CCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBCSGGGSSCS
T ss_pred             -------------------chhHHhhc-----ccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCcccccccccccc
Confidence                               01111211     1122345789999999999999999999999999999887        


Q ss_pred             ------cCCcHHHHHHHcCcHHHHHHHHh---cccccccccccCCcHHHHHHHcCC---------HHHHHHHHhcCCCCC
Q psy12891        453 ------TGFTAVHLAAQNGHNQVLEEMRS---SKALNVYSKKLGVTALHVAAYFGQ---------ADTVRELLSHVPGTV  514 (567)
Q Consensus       453 ------~g~t~l~~A~~~~~~~~v~~Ll~---~~~~~~~~~~~g~t~l~~A~~~~~---------~~~~~~Ll~~~~~~~  514 (567)
                            .|.||||+|+..|+.+++++|++   .|++++.+|..|+||||+|+..++         .+++++|++++++..
T Consensus       141 ~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~gad~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~n  220 (273)
T 2pnn_A          141 GRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLH  220 (273)
T ss_dssp             SSCCCCSCBSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             ccccccCCCCHHHHHHHcCCHHHHHHHHhcccCCCCceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhcc
Confidence                  79999999999999999999999   999999999999999999999998         899999999876542


Q ss_pred             CCCCCCCcccccccCCCCCCCHHHHHHHcCCHHHHHHHHhccCC-cccccccc
Q psy12891        515 KSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVRLLLNSAGV-QVDAQTQE  566 (567)
Q Consensus       515 ~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~g~-~~~~~~~~  566 (567)
                      ...      ...+++|..|.||||+|++.|+.++|++|+++ |+ ||.....+
T Consensus       221 ~~~------~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~-ga~dp~~~~~~  266 (273)
T 2pnn_A          221 PTL------KLEEITNRKGLTPLALAASSGKIGVLAYILQR-EIHEPECRHAA  266 (273)
T ss_dssp             TTC------CGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHH-HTC--------
T ss_pred             ccc------ccccccCCCCCCHHHHHHHhChHHHHHHHHHC-CCCCchhhhhh
Confidence            110      01135789999999999999999999999997 77 88876554

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=100.00  E-value=3.4e-33  Score=230.86  Aligned_cols=158  Identities=33%  Similarity=0.415  Sum_probs=135.1

Q ss_pred             cHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCccCcCCcHHHHHHHcCc
Q psy12891        387 TCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGH  466 (567)
Q Consensus       387 ~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~  466 (567)
                      ++|+.|+..|+.++|++|++.+.+.   +..+..|.||||+|+..++.+++++|+++|++++.+|..|+||||+|+..|+
T Consensus         6 ~~L~~Aa~~G~~~~v~~Ll~~Gadv---n~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~~~~d~~g~TpLh~A~~~g~   82 (169)
T 4gpm_A            6 KRLIEAAENGNKDRVKDLIENGADV---NASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGH   82 (169)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTTCCT---TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCC---CCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhhhccCCCCHHHHHHHcCC
Confidence            3678888888888888888877663   3445578899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcccccccccccCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcccccccCCCCCCCHHHHHHHcCCH
Q psy12891        467 NQVLEEMRSSKALNVYSKKLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNE  546 (567)
Q Consensus       467 ~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~  546 (567)
                      .+++++|+++|++++.+|..|+||||+|+..|+.+++++|++++++.             +.+|..|.|||++|+++|+.
T Consensus        83 ~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~-------------~~~d~~G~TpL~~A~~~g~~  149 (169)
T 4gpm_A           83 KEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADV-------------NTSDSDGRTPLDLAREHGNE  149 (169)
T ss_dssp             HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-------------TCCCTTSCCHHHHHHHTTCH
T ss_pred             HHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-------------cccCCCCCCHHHHHHHcCCH
Confidence            99999999999999999999999999999999999999999987764             56788899999999999999


Q ss_pred             HHHHHHHhccCCccc
Q psy12891        547 NVVRLLLNSAGVQVD  561 (567)
Q Consensus       547 ~~v~~Ll~~~g~~~~  561 (567)
                      ++|++|+++ |++++
T Consensus       150 ~iv~~Ll~~-GA~ie  163 (169)
T 4gpm_A          150 EVVKLLEKQ-GGWLE  163 (169)
T ss_dssp             HHHHHHHTC------
T ss_pred             HHHHHHHHC-CCCcC
Confidence            999999986 99876

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=100.00  E-value=2.7e-32  Score=236.04  Aligned_cols=191  Identities=18%  Similarity=0.222  Sum_probs=177.2

Q ss_pred             cCCCCHHHHHHHcCCHHHHHHHHHhCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCCCCHHHHH
Q psy12891        349 DQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLA  428 (567)
Q Consensus       349 ~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~t~L~~A  428 (567)
                      ..+.|||+.|+..++.+.++.|+..++..++..+..|.||||+|+..++.+++++|++.+.+..   ..+..|.||||+|
T Consensus         3 ~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~---~~~~~g~t~l~~A   79 (201)
T 3hra_A            3 TYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADIN---LQNSISDSPYLYA   79 (201)
T ss_dssp             CCCTTHHHHHHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTT---CCCTTSCCHHHHH
T ss_pred             cccccHHHHHHHhccHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC---CCCCCCCCHHHHH
Confidence            4678999999999999999999999886788999999999999999999999999999877643   3455789999999


Q ss_pred             HHcCcHHHHHHHH-HcCCCCCCccCcCCcHHHHHHHcCcHHHHHHHHhcc-cccccccccCCcHHHHHHHcCC-----HH
Q psy12891        429 AEGGHANVVRVLV-KAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSK-ALNVYSKKLGVTALHVAAYFGQ-----AD  501 (567)
Q Consensus       429 ~~~~~~~~v~~Ll-~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~-~~~~~~~~~g~t~l~~A~~~~~-----~~  501 (567)
                      +..|+.+++++|+ ..+++++..+..|.||||+|+..|+.+++++|++.| ++++.+|..|+||||+|+..++     .+
T Consensus        80 ~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~  159 (201)
T 3hra_A           80 GAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQD  159 (201)
T ss_dssp             HHTTCHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHH
T ss_pred             HHcCCHHHHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhhHHH
Confidence            9999999999999 677899999999999999999999999999999999 8999999999999999999998     99


Q ss_pred             HHHHHHhcCCCCCCCCCCCCcccccccCCCCCCCHHHHHHHcCCHHHHHHHHhc
Q psy12891        502 TVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVRLLLNS  555 (567)
Q Consensus       502 ~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~  555 (567)
                      ++++|++++.+.             +.+|..|.|||++|++.|+.+++++|+++
T Consensus       160 ~v~~Ll~~ga~~-------------~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~  200 (201)
T 3hra_A          160 IVKLLMENGADQ-------------SIKDNSGRTAMDYANQKGYTEISKILAQY  200 (201)
T ss_dssp             HHHHHHHTTCCT-------------TCCCTTSCCHHHHHHHHTCHHHHHHHHTC
T ss_pred             HHHHHHHCCCCC-------------CccCCCCCCHHHHHHHcCCHhHHHHHHhc
Confidence            999999998765             56789999999999999999999999985

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=100.00  E-value=2.7e-33  Score=252.08  Aligned_cols=197  Identities=19%  Similarity=0.160  Sum_probs=174.9

Q ss_pred             cCCCHHHHHHHcCcHH----HHHHHHHcCCCCCC----cCcCCCCHHHHHHHc---CCHHHHHHHHHhCCCCcc------
Q psy12891        317 RKQTPLHLAAEAGQLQ----VCKLLLDLGASIDA----TDDQGQKPIHVAAQN---NFPEVAQIFLRAHPSLVT------  379 (567)
Q Consensus       317 ~~~t~L~~a~~~~~~~----~v~~Ll~~g~~~~~----~~~~g~t~L~~A~~~---~~~~~~~~Ll~~~~~~~~------  379 (567)
                      .|+||||.|+..|+.+    ++++|++.|++++.    .+..|.||||+|+..   ++.+++++|++.++....      
T Consensus         1 ~G~t~L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~   80 (256)
T 2etb_A            1 FDRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVN   80 (256)
T ss_dssp             CCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGG
T ss_pred             CCccHHHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhcc
Confidence            3679999999999997    67888889999998    899999999999999   999999999998765321      


Q ss_pred             ----ccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccCC----------CCCCCCHHHHHHHcCcHHHHHHHHH---
Q psy12891        380 ----ATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARN----------RVTEATPLQLAAEGGHANVVRVLVK---  442 (567)
Q Consensus       380 ----~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~----------~~~~~t~L~~A~~~~~~~~v~~Ll~---  442 (567)
                          ..+..|.||||+|+..|+.+++++|++.+.+.......          +..|.||||+|+..|+.+++++|++   
T Consensus        81 ~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~  160 (256)
T 2etb_A           81 AQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPH  160 (256)
T ss_dssp             CCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSS
T ss_pred             cccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhccc
Confidence                23467999999999999999999999998764433221          1239999999999999999999999   


Q ss_pred             cCCCCCCccCcCCcHHHHHHH--cCcHH-------HHHHHHhccccc-------ccccccCCcHHHHHHHcCCHHHHHHH
Q psy12891        443 AGASCTDENKTGFTAVHLAAQ--NGHNQ-------VLEEMRSSKALN-------VYSKKLGVTALHVAAYFGQADTVREL  506 (567)
Q Consensus       443 ~g~~~~~~~~~g~t~l~~A~~--~~~~~-------~v~~Ll~~~~~~-------~~~~~~g~t~l~~A~~~~~~~~~~~L  506 (567)
                      +|++++.+|..|+||||+|+.  .++.+       ++++|+++|+++       +.+|..|+||||+|+..|+.+++++|
T Consensus       161 ~ga~~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~L  240 (256)
T 2etb_A          161 QPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHI  240 (256)
T ss_dssp             CCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHSTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             cCCCcCccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCCCcccccccccccCCCCCCHHHHHHHhCCHHHHHHH
Confidence            999999999999999999999  88888       999999999999       89999999999999999999999999


Q ss_pred             HhcCCCC
Q psy12891        507 LSHVPGT  513 (567)
Q Consensus       507 l~~~~~~  513 (567)
                      +++++..
T Consensus       241 l~~g~~~  247 (256)
T 2etb_A          241 LQREFSG  247 (256)
T ss_dssp             HHHHHHH
T ss_pred             HhCCCCC
Confidence            9986543

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=100.00  E-value=2.4e-33  Score=252.43  Aligned_cols=206  Identities=22%  Similarity=0.252  Sum_probs=177.1

Q ss_pred             CCCCHHHHHHHcCCHH----HHHHHHHhCCCCccc----cCCCCCcHHHHHHHc---CCHHHHHHHHhcCCCccccc---
Q psy12891        350 QGQKPIHVAAQNNFPE----VAQIFLRAHPSLVTA----TTKDGNTCAHIAAMQ---GSVGVIEELMKFDRSGVISA---  415 (567)
Q Consensus       350 ~g~t~L~~A~~~~~~~----~~~~Ll~~~~~~~~~----~~~~~~~~l~~a~~~---~~~~~~~~ll~~~~~~~~~~---  415 (567)
                      .|+||||.|+..|+.+    ++++|++.+.+ ++.    .+..|.||||+|+..   |+.+++++|++.+.+.....   
T Consensus         1 ~G~t~L~~A~~~g~~~~v~~ll~~l~~~g~~-i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~   79 (256)
T 2etb_A            1 FDRDRLFSVVSRGVPEELTGLLEYLRWNSKY-LTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLV   79 (256)
T ss_dssp             CCHHHHHHHHHHTCGGGGTTHHHHHHHHTCC-TTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGG
T ss_pred             CCccHHHHHHHcCCHHHHHHHHHHHHHcCCC-cccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhc
Confidence            3789999999999997    66777778776 455    799999999999999   99999999999876543211   


Q ss_pred             -----CCCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCccCc-------------CCcHHHHHHHcCcHHHHHHHHh--
Q psy12891        416 -----RNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKT-------------GFTAVHLAAQNGHNQVLEEMRS--  475 (567)
Q Consensus       416 -----~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~-------------g~t~l~~A~~~~~~~~v~~Ll~--  475 (567)
                           ..+..|.||||+|+..|+.+++++|+++|++++..+..             |.||||+|+..|+.+++++|++  
T Consensus        80 ~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~  159 (256)
T 2etb_A           80 NAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENP  159 (256)
T ss_dssp             GCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCS
T ss_pred             ccccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhcc
Confidence                 23357999999999999999999999999999998886             9999999999999999999999  


Q ss_pred             -cccccccccccCCcHHHHHHH--cCCHH-------HHHHHHhcCCCCCCCCCCCCcccccccCCCCCCCHHHHHHHcCC
Q psy12891        476 -SKALNVYSKKLGVTALHVAAY--FGQAD-------TVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGN  545 (567)
Q Consensus       476 -~~~~~~~~~~~g~t~l~~A~~--~~~~~-------~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~  545 (567)
                       .|++++.+|..|+||||+|+.  .++.+       ++++|++++++.....      .+.+.+|..|.||||+|++.|+
T Consensus       160 ~~ga~~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~------~~~~~~d~~g~tpL~~A~~~g~  233 (256)
T 2etb_A          160 HQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTV------QLEEISNHQGLTPLKLAAKEGK  233 (256)
T ss_dssp             SCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHSTTC------CGGGCCCTTSCCHHHHHHHTTC
T ss_pred             ccCCCcCccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCCCccccc------ccccccCCCCCCHHHHHHHhCC
Confidence             999999999999999999999  88888       9999999876542111      1125678999999999999999


Q ss_pred             HHHHHHHHhccCCccccc
Q psy12891        546 ENVVRLLLNSAGVQVDAQ  563 (567)
Q Consensus       546 ~~~v~~Ll~~~g~~~~~~  563 (567)
                      .++|++|+++ |.++...
T Consensus       234 ~~~v~~Ll~~-g~~~~~~  250 (256)
T 2etb_A          234 IEIFRHILQR-EFSGAAA  250 (256)
T ss_dssp             HHHHHHHHHH-HHHHHHH
T ss_pred             HHHHHHHHhC-CCCCCCc
Confidence            9999999997 7776543

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=100.00  E-value=3.1e-32  Score=225.08  Aligned_cols=157  Identities=34%  Similarity=0.456  Sum_probs=104.6

Q ss_pred             CHHHHHHHcCcHHHHHHHHHcCCCCCCcCcCCCCHHHHHHHcCCHHHHHHHHHhCCCCccccCCCCCcHHHHHHHcCCHH
Q psy12891        320 TPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVG  399 (567)
Q Consensus       320 t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~  399 (567)
                      ++|+.|++.|+.++|++|+++|+|+|.+|..|.|||++|+..++.+++++|++.+.+ ++..+..|+||           
T Consensus         6 ~~L~~Aa~~G~~~~v~~Ll~~Gadvn~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad-~~~~d~~g~Tp-----------   73 (169)
T 4gpm_A            6 KRLIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGAD-VNAKDSDGRTP-----------   73 (169)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCH-----------
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccc-hhhhccCCCCH-----------
Confidence            368999999999999999999999999999999999999999999999999988766 44555555554           


Q ss_pred             HHHHHHhcCCCcccccCCCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCccCcCCcHHHHHHHcCcHHHHHHHHhcccc
Q psy12891        400 VIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKAL  479 (567)
Q Consensus       400 ~~~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~  479 (567)
                                               ||+|+..|+.+++++|+++|+++|.+|..|+||||+|+..|+.+++++|+++|++
T Consensus        74 -------------------------Lh~A~~~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad  128 (169)
T 4gpm_A           74 -------------------------LHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGAD  128 (169)
T ss_dssp             -------------------------HHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred             -------------------------HHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence                                     5555555555555555555555555555555555555555555555555555555


Q ss_pred             cccccccCCcHHHHHHHcCCHHHHHHHHhcCCCC
Q psy12891        480 NVYSKKLGVTALHVAAYFGQADTVRELLSHVPGT  513 (567)
Q Consensus       480 ~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~  513 (567)
                      ++.+|..|+||||+|+..|+.+++++|+++|++.
T Consensus       129 ~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GA~i  162 (169)
T 4gpm_A          129 VNTSDSDGRTPLDLAREHGNEEVVKLLEKQGGWL  162 (169)
T ss_dssp             TTCCCTTSCCHHHHHHHTTCHHHHHHHHTC----
T ss_pred             ccccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCc
Confidence            5555555555555555555555555555555443

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=99.98  E-value=3.7e-32  Score=247.08  Aligned_cols=177  Identities=21%  Similarity=0.220  Sum_probs=139.4

Q ss_pred             hhhcCCCHHHHHHHc---CcHHHHHHHHHcCCCCCC-----------cCcCCCCHHHHHHHcCCHHHHHHHHHhCCCCcc
Q psy12891        314 LTLRKQTPLHLAAEA---GQLQVCKLLLDLGASIDA-----------TDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVT  379 (567)
Q Consensus       314 ~~~~~~t~L~~a~~~---~~~~~v~~Ll~~g~~~~~-----------~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~  379 (567)
                      .+..|.||||+|+..   |+.+++++|+++|++++.           .+..|.||||+|+..++.+++++|++.+++ ++
T Consensus        50 ~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~-~~  128 (273)
T 2pnn_A           50 DPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGAD-VQ  128 (273)
T ss_dssp             CTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCHHHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCC-TT
T ss_pred             cCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccchhHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCC-cC
Confidence            477899999999987   999999999999876432           344566666666666666666666666554 23


Q ss_pred             ccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCCCCHHHHHHHcCcHHHHHHHHH---cCCCCCCccCcCCc
Q psy12891        380 ATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVK---AGASCTDENKTGFT  456 (567)
Q Consensus       380 ~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~---~g~~~~~~~~~g~t  456 (567)
                      ..+..+.                  ..    .......+..|.||||+|+..|+.+++++|++   +|++++.+|..|+|
T Consensus       129 ~~~~~~~------------------~~----~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~gad~~~~d~~g~t  186 (273)
T 2pnn_A          129 AAANGDF------------------FK----KTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNT  186 (273)
T ss_dssp             CCBCSGG------------------GS----SCSSSCCCCSCBSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCC
T ss_pred             ccccccc------------------cc----cccccccccCCCCHHHHHHHcCCHHHHHHHHhcccCCCCceeeCCCCCc
Confidence            3332210                  00    00112223468899999999999999999999   99999999999999


Q ss_pred             HHHHHHHcCc---------HHHHHHHHhcccccc-------cccccCCcHHHHHHHcCCHHHHHHHHhcCCCC
Q psy12891        457 AVHLAAQNGH---------NQVLEEMRSSKALNV-------YSKKLGVTALHVAAYFGQADTVRELLSHVPGT  513 (567)
Q Consensus       457 ~l~~A~~~~~---------~~~v~~Ll~~~~~~~-------~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~  513 (567)
                      |||+|+..|+         .+++++|+++|++++       .+|..|+||||+|+..|+.+++++|+++++..
T Consensus       187 pLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~n~~~~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~d  259 (273)
T 2pnn_A          187 VLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQREIHE  259 (273)
T ss_dssp             HHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTC-
T ss_pred             HHHHHHHccCcchhHHHHHHHHHHHHHHhhhhcccccccccccCCCCCCHHHHHHHhChHHHHHHHHHCCCCC
Confidence            9999999888         799999999999886       48999999999999999999999999998843

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.98  E-value=1.6e-32  Score=247.81  Aligned_cols=215  Identities=18%  Similarity=0.188  Sum_probs=169.6

Q ss_pred             hhcCCCHHHHHHHcCcHHH----HHHHHHcCCCCCCcC----cCCCCHHHHHH---HcCCHHHHHHHHHhCCCCccccCC
Q psy12891        315 TLRKQTPLHLAAEAGQLQV----CKLLLDLGASIDATD----DQGQKPIHVAA---QNNFPEVAQIFLRAHPSLVTATTK  383 (567)
Q Consensus       315 ~~~~~t~L~~a~~~~~~~~----v~~Ll~~g~~~~~~~----~~g~t~L~~A~---~~~~~~~~~~Ll~~~~~~~~~~~~  383 (567)
                      +..++++|+.|++.|+.+.    +++|++.|++++..+    ..|.||||+|+   ..++.+++++|++.+.....    
T Consensus         2 ~~~~~~~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~----   77 (260)
T 3jxi_A            2 KVFNRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGN----   77 (260)
T ss_dssp             CCCCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTC----
T ss_pred             ccchHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccc----
Confidence            3457788888888888884    455555888888665    56888888888   56888888888876543110    


Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcc------------
Q psy12891        384 DGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDEN------------  451 (567)
Q Consensus       384 ~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~------------  451 (567)
                                       +..++.     ......+..|.||||+|+..|+.+++++|+++|++++..+            
T Consensus        78 -----------------~~~~~~-----~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~  135 (260)
T 3jxi_A           78 -----------------MREFIN-----SPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGG  135 (260)
T ss_dssp             -----------------HHHHHT-----CCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCEECCCSSSCCCC
T ss_pred             -----------------hHhhhc-----ccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCcCccccccccCcccccc
Confidence                             011111     1122333478899999999999999999999999999988            


Q ss_pred             --CcCCcHHHHHHHcCcHHHHHHHHh---cccccccccccCCcHHHHHHHcCC---------HHHHHHHHhcCCCCCCCC
Q psy12891        452 --KTGFTAVHLAAQNGHNQVLEEMRS---SKALNVYSKKLGVTALHVAAYFGQ---------ADTVRELLSHVPGTVKSD  517 (567)
Q Consensus       452 --~~g~t~l~~A~~~~~~~~v~~Ll~---~~~~~~~~~~~g~t~l~~A~~~~~---------~~~~~~Ll~~~~~~~~~~  517 (567)
                        ..|+||||+|+..|+.+++++|++   .|++++.+|..|+||||+|+..++         .+++++|++++++.....
T Consensus       136 ~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~ga~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~  215 (260)
T 3jxi_A          136 YFYFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDT  215 (260)
T ss_dssp             SCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred             cccCCCCHHHHHHHcCCHHHHHHHHhccccCCCCcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCccccccc
Confidence              589999999999999999999999   999999999999999999998888         799999999876542111


Q ss_pred             CCCCcccccccCCCCCCCHHHHHHHcCCHHHHHHHHhccCCcccc
Q psy12891        518 PPTGASFLGELGSESGMTPLHLAAYSGNENVVRLLLNSAGVQVDA  562 (567)
Q Consensus       518 ~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~g~~~~~  562 (567)
                            ...+..|..|.||||+|++.|+.++|++||++ |.++..
T Consensus       216 ------~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~-g~~~~~  253 (260)
T 3jxi_A          216 ------NLEALLNNDGLSPLMMAAKTGKIGIFQHIIRR-EIADAA  253 (260)
T ss_dssp             ------CGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHH-HHHHHC
T ss_pred             ------chhhcccCCCCCHHHHHHHcCCHHHHHHHHHh-CCCccc
Confidence                  11256789999999999999999999999998 766554

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.98  E-value=3.1e-32  Score=245.88  Aligned_cols=186  Identities=17%  Similarity=0.176  Sum_probs=142.3

Q ss_pred             chhhhhhhhh----hcCCCHHHHHH---HcCcHHHHHHHHHcCCCC-----------CCcCcCCCCHHHHHHHcCCHHHH
Q psy12891        306 DHAAVIDILT----LRKQTPLHLAA---EAGQLQVCKLLLDLGASI-----------DATDDQGQKPIHVAAQNNFPEVA  367 (567)
Q Consensus       306 ~~~~~~~~~~----~~~~t~L~~a~---~~~~~~~v~~Ll~~g~~~-----------~~~~~~g~t~L~~A~~~~~~~~~  367 (567)
                      ..+..++..+    ..|.||||+|+   ..|+.+++++|++.|+++           +..+..|.||||+|+..|+.+++
T Consensus        30 ~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v  109 (260)
T 3jxi_A           30 THKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYV  109 (260)
T ss_dssp             HHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCBCCSSEESBCHHHHHHHTTCHHHH
T ss_pred             hcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhcccccccccCCCCHHHHHHHcCCHHHH
Confidence            3566666555    56999999999   779999999999998653           33333556666666666666666


Q ss_pred             HHHHHhCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCCCCHHHHHHHcCcHHHHHHHHH---cC
Q psy12891        368 QIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVK---AG  444 (567)
Q Consensus       368 ~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~---~g  444 (567)
                      ++|++.+++ ++..+..+.                      .........+..|.||||+|+..|+.+++++|++   +|
T Consensus       110 ~~Ll~~ga~-~~~~~~~~~----------------------~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~g  166 (260)
T 3jxi_A          110 ELLVEKGAD-VHAQARGRF----------------------FQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQ  166 (260)
T ss_dssp             HHHHHTTCC-TTCCCEECC----------------------CSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHCSSCC
T ss_pred             HHHHhCCCC-cCccccccc----------------------cCcccccccccCCCCHHHHHHHcCCHHHHHHHHhccccC
Confidence            666665544 222222100                      0000111122478899999999999999999999   99


Q ss_pred             CCCCCccCcCCcHHHHHHHcCc---------HHHHHHHHhccccc-------ccccccCCcHHHHHHHcCCHHHHHHHHh
Q psy12891        445 ASCTDENKTGFTAVHLAAQNGH---------NQVLEEMRSSKALN-------VYSKKLGVTALHVAAYFGQADTVRELLS  508 (567)
Q Consensus       445 ~~~~~~~~~g~t~l~~A~~~~~---------~~~v~~Ll~~~~~~-------~~~~~~g~t~l~~A~~~~~~~~~~~Ll~  508 (567)
                      ++++.+|..|+||||+|+..++         .+++++|+++|+++       +.+|..|+||||+|+..|+.+++++|++
T Consensus       167 a~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~  246 (260)
T 3jxi_A          167 ADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHIIR  246 (260)
T ss_dssp             CCTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred             CCCcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcccccccchhhcccCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            9999999999999999998887         79999999999988       6799999999999999999999999999


Q ss_pred             cCCCCC
Q psy12891        509 HVPGTV  514 (567)
Q Consensus       509 ~~~~~~  514 (567)
                      +++...
T Consensus       247 ~g~~~~  252 (260)
T 3jxi_A          247 REIADA  252 (260)
T ss_dssp             HHHHHH
T ss_pred             hCCCcc
Confidence            977554

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.97  E-value=3.1e-31  Score=240.13  Aligned_cols=192  Identities=21%  Similarity=0.266  Sum_probs=178.4

Q ss_pred             hcCCCHHHHHHHcCcHHHHHHHHHcCCC--CCCcCcCCCCHHHHHHHcCCHHHHHHHHHhCCCCccccCCCCCcHHHHHH
Q psy12891        316 LRKQTPLHLAAEAGQLQVCKLLLDLGAS--IDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAA  393 (567)
Q Consensus       316 ~~~~t~L~~a~~~~~~~~v~~Ll~~g~~--~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~  393 (567)
                      ....++++.|+..++.+.++.+++.+.+  +|..|..|.||||+|+..|+.+++++|++.++..++..+..|.|||++|+
T Consensus        74 ~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a~  153 (276)
T 4hbd_A           74 LACRSDAHPELVRRHLVTFRAMSARLLDYVVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTA  153 (276)
T ss_dssp             HHHSTTCCHHHHHHHHHHHHHHCHHHHHHHHTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHGG
T ss_pred             HHhccCCCHHHHHHHHHHHHHHHHHHHhhcCcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHHHH
Confidence            3456889999999999999999988777  88999999999999999999999999999998668999999999999999


Q ss_pred             -----HcCCHHHHHHHHhcCCCcccccCCCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCccCcCCcHHHHHHHcCcHH
Q psy12891        394 -----MQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQ  468 (567)
Q Consensus       394 -----~~~~~~~~~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~  468 (567)
                           ..++.+++++|++.+..   ....+..|.||||+|+..|+.+++++|+++|+++|.+|..|+||||+|+..|+.+
T Consensus       154 ~~~~~~~~~~~~v~~Ll~~g~~---~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~n~~d~~G~TpLh~A~~~g~~~  230 (276)
T 4hbd_A          154 LATLKTQDDIETVLQLFRLGNI---NAKASQAGQTALMLAVSHGRVDVVKALLACEADVNVQDDDGSTALMCACEHGHKE  230 (276)
T ss_dssp             GCCCCSHHHHHHHHHHHHHSCT---TCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHH
T ss_pred             HHHhhhhhhHHHHHHHHHcCCC---ccccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHCCCHH
Confidence                 67899999999998754   3445557999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHh-cccccccccccCCcHHHHHHHcCCHHHHHHHHhcC
Q psy12891        469 VLEEMRS-SKALNVYSKKLGVTALHVAAYFGQADTVRELLSHV  510 (567)
Q Consensus       469 ~v~~Ll~-~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~  510 (567)
                      ++++|++ .|++++.+|..|+||||+|+..|+.+++++|+++.
T Consensus       231 iv~~Ll~~~gad~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~~  273 (276)
T 4hbd_A          231 IAGLLLAVPSCDISLTDRDGSTALMVALDAGQSEIASMLYSRM  273 (276)
T ss_dssp             HHHHHHTSTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHC
T ss_pred             HHHHHHhcCCCCCcCcCCCCCCHHHHHHHcCCHHHHHHHHhcc
Confidence            9999999 89999999999999999999999999999999984

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.97  E-value=1.3e-30  Score=236.06  Aligned_cols=193  Identities=19%  Similarity=0.244  Sum_probs=171.9

Q ss_pred             CCHHHHHHHcCCHHHHHHHHHhCCC-CccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCCCCHHHHHH-
Q psy12891        352 QKPIHVAAQNNFPEVAQIFLRAHPS-LVTATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAA-  429 (567)
Q Consensus       352 ~t~L~~A~~~~~~~~~~~Ll~~~~~-~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~t~L~~A~-  429 (567)
                      .+++|.|+..++.+.++.+++.... .++..+..|.||||+|+..|+.+++++|++.+..  .....+..|.||||+|+ 
T Consensus        77 ~~~l~~a~~~~~~~~~~~l~~~~~~~~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~--~~~~~~~~g~tpL~~a~~  154 (276)
T 4hbd_A           77 RSDAHPELVRRHLVTFRAMSARLLDYVVNIADSNGNTALHYSVSHANFPVVQQLLDSGVC--KVDKQNRAGYSPIMLTAL  154 (276)
T ss_dssp             STTCCHHHHHHHHHHHHHHCHHHHHHHHTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCC--CTTCCCTTSCCHHHHGGG
T ss_pred             ccCCCHHHHHHHHHHHHHHHHHHHhhcCcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCC--cCCCCCCCCCCHHHHHHH
Confidence            4677888988999998888765332 2567889999999999999999999999998763  34455668999999999 


Q ss_pred             ----HcCcHHHHHHHHHcCCCCCCccCcCCcHHHHHHHcCcHHHHHHHHhcccccccccccCCcHHHHHHHcCCHHHHHH
Q psy12891        430 ----EGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLGVTALHVAAYFGQADTVRE  505 (567)
Q Consensus       430 ----~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~  505 (567)
                          ..++.+++++|++.|++++..+..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++
T Consensus       155 ~~~~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~n~~d~~G~TpLh~A~~~g~~~iv~~  234 (276)
T 4hbd_A          155 ATLKTQDDIETVLQLFRLGNINAKASQAGQTALMLAVSHGRVDVVKALLACEADVNVQDDDGSTALMCACEHGHKEIAGL  234 (276)
T ss_dssp             CCCCSHHHHHHHHHHHHHSCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHH
T ss_pred             HHhhhhhhHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHCCCHHHHHH
Confidence                6789999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHh-cCCCCCCCCCCCCcccccccCCCCCCCHHHHHHHcCCHHHHHHHHhccCCc
Q psy12891        506 LLS-HVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVRLLLNSAGVQ  559 (567)
Q Consensus       506 Ll~-~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~g~~  559 (567)
                      |++ .+.+.             +.+|..|.|||++|++.|+.+++++|+++.|++
T Consensus       235 Ll~~~gad~-------------~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~~~ik  276 (276)
T 4hbd_A          235 LLAVPSCDI-------------SLTDRDGSTALMVALDAGQSEIASMLYSRMNIK  276 (276)
T ss_dssp             HHTSTTCCT-------------TCCCTTSCCHHHHHHHHTCHHHHHHHHHHCCCC
T ss_pred             HHhcCCCCC-------------cCcCCCCCCHHHHHHHcCCHHHHHHHHhccCCC
Confidence            999 55543             667899999999999999999999999987763

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.97  E-value=6.1e-30  Score=214.83  Aligned_cols=166  Identities=22%  Similarity=0.198  Sum_probs=135.5

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCccCcCCcHHHHHHHc
Q psy12891        385 GNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQN  464 (567)
Q Consensus       385 ~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~  464 (567)
                      +.+|||.|+..|+.+++++|++.+..  .....+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~~~~--~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~   79 (172)
T 3v30_A            2 DSLSIHQLAAQGELDQLKEHLRKGDN--LVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTG   79 (172)
T ss_dssp             --CCHHHHHHTTCHHHHHHHHTTCSG--GGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHT
T ss_pred             chhhHHHHHHcCCHHHHHHHHHcCcc--cccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCchhhcccCCCHHHHHHHC
Confidence            34678888888888888888876543  3444556788899999999999999999999999988888899999999999


Q ss_pred             CcHHHHHHHHhcccccccccccCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcccccccCCCCCCCHHHHHHHcC
Q psy12891        465 GHNQVLEEMRSSKALNVYSKKLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSG  544 (567)
Q Consensus       465 ~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~  544 (567)
                      |+.+++++|+++|++++.+|..|+||||+|+..++.+++++|++++.+.             +.+|..|.|||++|++.|
T Consensus        80 ~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-------------~~~~~~g~t~l~~A~~~~  146 (172)
T 3v30_A           80 GYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADL-------------TTEADSGYTPMDLAVALG  146 (172)
T ss_dssp             TCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-------------TCCCTTSCCHHHHHHHHT
T ss_pred             CCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-------------cccCCCCCCHHHHHHHhC
Confidence            9999999999999888888888999999999999999999999887654             556788889999999999


Q ss_pred             CHHHHHHHHhccCCcccccccc
Q psy12891        545 NENVVRLLLNSAGVQVDAQTQE  566 (567)
Q Consensus       545 ~~~~v~~Ll~~~g~~~~~~~~~  566 (567)
                      +.+++++|+++ |+++..++..
T Consensus       147 ~~~~~~~L~~~-~~~~~~~~~~  167 (172)
T 3v30_A          147 YRKVQQVIENH-ILKLFQSNLV  167 (172)
T ss_dssp             CHHHHHHHHHH-HHHHSCC---
T ss_pred             cHHHHHHHHHH-HHHHhcccCC
Confidence            99999999986 8887776643

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.97  E-value=8.6e-30  Score=211.78  Aligned_cols=159  Identities=25%  Similarity=0.284  Sum_probs=142.0

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCccCcCCcHHHHHHH
Q psy12891        384 DGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQ  463 (567)
Q Consensus       384 ~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~  463 (567)
                      ...+||+.|+..|+.+++++|++.+.+.   ...+..|.||||+|+. |+.+++++|+++|++++.++..|.||||+|+.
T Consensus         4 ~~~~~L~~A~~~g~~~~v~~Ll~~~~~~---~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~   79 (162)
T 1ihb_A            4 PWGNELASAAARGDLEQLTSLLQNNVNV---NAQNGFGRTALQVMKL-GNPEIARRLLLRGANPDLKDRTGFAVIHDAAR   79 (162)
T ss_dssp             -CHHHHHHHHHHTCHHHHHHHTTSCCCT---TCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred             hHhhHHHHHHHcCCHHHHHHHHhCCCCc---cccCccCccHHHHHHc-CcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHH
Confidence            4558899999999999999999876553   3445578999999999 99999999999999999999999999999999


Q ss_pred             cCcHHHHHHHHhcccccccccccCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcccccccCCCCCCCHHHHHHHc
Q psy12891        464 NGHNQVLEEMRSSKALNVYSKKLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYS  543 (567)
Q Consensus       464 ~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~  543 (567)
                      .|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|++++++..            +..+..|.|||++|++.
T Consensus        80 ~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~------------~~~~~~g~t~l~~A~~~  147 (162)
T 1ihb_A           80 AGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNV------------GHRNHKGDTACDLARLY  147 (162)
T ss_dssp             HTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCT------------TCCCTTSCCHHHHHHHT
T ss_pred             cCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHccCCCC------------CCcCCCCCcHHHHHHHc
Confidence            999999999999999999999999999999999999999999999988654            45688999999999999


Q ss_pred             CCHHHHHHHHhccCCc
Q psy12891        544 GNENVVRLLLNSAGVQ  559 (567)
Q Consensus       544 ~~~~~v~~Ll~~~g~~  559 (567)
                      |+.+++++|+++ |+|
T Consensus       148 ~~~~~~~~Ll~~-GAd  162 (162)
T 1ihb_A          148 GRNEVVSLMQAN-GAG  162 (162)
T ss_dssp             TCHHHHHHHHHT-C--
T ss_pred             CCHHHHHHHHHh-CCC
Confidence            999999999996 886

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.97  E-value=2.1e-29  Score=210.44  Aligned_cols=161  Identities=20%  Similarity=0.186  Sum_probs=116.9

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCccCcCCcHHHHHHH
Q psy12891        384 DGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQ  463 (567)
Q Consensus       384 ~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~  463 (567)
                      .|.||||.|+..|+.+++++|++.+..   ....+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+.
T Consensus         2 ~~~t~L~~A~~~g~~~~v~~ll~~~~~---~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~   78 (167)
T 3v31_A            2 ANSLSVHQLAAQGEMLYLATRIEQENV---INHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACS   78 (167)
T ss_dssp             TTCCCHHHHHHTTCHHHHHHHHHHSSC---TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHH
T ss_pred             CCcchHHHHHHCCCHHHHHHHHHcCCC---cCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHH
Confidence            356677777777777777777766533   33334467777777777777777777777777777777777777877777


Q ss_pred             cCcHHHHHHHHhcccccccccccCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcccccccCCCCCCCHHHHHHHc
Q psy12891        464 NGHNQVLEEMRSSKALNVYSKKLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYS  543 (567)
Q Consensus       464 ~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~  543 (567)
                      .|+.+++++|+++|++++.+|..|+||||+|+..++.+++++|++++.+.             +.++..|.|||++|+..
T Consensus        79 ~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-------------~~~~~~g~t~l~~A~~~  145 (167)
T 3v31_A           79 KGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADP-------------TIETDSGYNSMDLAVAL  145 (167)
T ss_dssp             HTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-------------TCCCTTSCCHHHHHHHH
T ss_pred             cCCHHHHHHHHHCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-------------CCcCCCCCCHHHHHHHc
Confidence            77777777777777777777777777888777777777887777776543             44567777888888888


Q ss_pred             CCHHHHHHHHhccCCccc
Q psy12891        544 GNENVVRLLLNSAGVQVD  561 (567)
Q Consensus       544 ~~~~~v~~Ll~~~g~~~~  561 (567)
                      |+.+++++|+++ +++..
T Consensus       146 ~~~~~~~~L~~~-~~~~~  162 (167)
T 3v31_A          146 GYRSVQQVIESH-LLKLL  162 (167)
T ss_dssp             TCHHHHHHHHHH-HHHHC
T ss_pred             CcHHHHHHHHHH-HHHHH
Confidence            888888887775 55443

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.97  E-value=1.3e-29  Score=214.13  Aligned_cols=169  Identities=19%  Similarity=0.226  Sum_probs=146.1

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCccCcCCcHHHHHH
Q psy12891        383 KDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAA  462 (567)
Q Consensus       383 ~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~  462 (567)
                      .++.++|+.|+..|+.+++++|++.+..  .....+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+
T Consensus         3 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~--~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~   80 (179)
T 3f6q_A            3 PEFMDDIFTQCREGNAVAVRLWLDNTEN--DLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAA   80 (179)
T ss_dssp             ----CCHHHHHHHTCHHHHHHHHHCTTS--CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHhcCcc--cccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCCHHHHHH
Confidence            3567888888888888888888886433  33445567889999999999999999999999999999999999999999


Q ss_pred             HcCcHHHHHHHHhcccccccccccCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcccccccCCCCCCCHHHHHHH
Q psy12891        463 QNGHNQVLEEMRSSKALNVYSKKLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAY  542 (567)
Q Consensus       463 ~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~  542 (567)
                      ..|+.+++++|+++|++++.+|..|+||||+|+..++.+++++|++++.+.             +.+|..|.|||++|+.
T Consensus        81 ~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-------------~~~~~~g~tpl~~A~~  147 (179)
T 3f6q_A           81 SHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALV-------------SICNKYGEMPVDKAKA  147 (179)
T ss_dssp             HTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCS-------------SBCCTTSCCGGGGSCH
T ss_pred             HcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCc-------------chhccCCCCcHHHHHH
Confidence            999999999999999999999999999999999999999999999987764             5678899999999999


Q ss_pred             cCCHHHHHHHHhccCCccccccccC
Q psy12891        543 SGNENVVRLLLNSAGVQVDAQTQEN  567 (567)
Q Consensus       543 ~~~~~~v~~Ll~~~g~~~~~~~~~~  567 (567)
                      .++.+++++|+++ |++++....++
T Consensus       148 ~~~~~~~~~L~~~-g~~~~~~~~~~  171 (179)
T 3f6q_A          148 PLRELLRERAEKM-GQNLNRIPYKD  171 (179)
T ss_dssp             HHHHHHHHHHHHT-TCCCSCBCCCC
T ss_pred             HHHHHHHHHHHHh-hcCcccCCccc
Confidence            9999999999985 99999877653

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.97  E-value=2.3e-29  Score=215.48  Aligned_cols=159  Identities=18%  Similarity=0.202  Sum_probs=99.7

Q ss_pred             cCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCccCcCCcHHHH
Q psy12891        381 TTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHL  460 (567)
Q Consensus       381 ~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~  460 (567)
                      ++..|.||||+|+..|+.+++++|++.+.+   ....+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+
T Consensus        31 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~---~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~  107 (192)
T 2rfm_A           31 RDSYNRTPLMVACMLGMENAIDKLVENFDK---LEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMW  107 (192)
T ss_dssp             CCTTCCCHHHHHHHHTCGGGHHHHHHHHCC---TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTSCCHHHH
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHhccc---cccccccCccHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHH
Confidence            344455555555555555555555544332   12223356666666666666667777776677766666667777777


Q ss_pred             HHHcCcHHHHHHHHhcccccccccccCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcccccccCCCCCCCHHHHH
Q psy12891        461 AAQNGHNQVLEEMRSSKALNVYSKKLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLA  540 (567)
Q Consensus       461 A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A  540 (567)
                      |+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|++++.+.             +.+|..|.|||++|
T Consensus       108 A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-------------~~~~~~g~t~l~~A  174 (192)
T 2rfm_A          108 SIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADI-------------SARDLTGLTAEASA  174 (192)
T ss_dssp             HHHHTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCT-------------TCBCTTSCBHHHHH
T ss_pred             HHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-------------CCcCCCCCCHHHHH
Confidence            77777777777777777666666666777777777777777777777665543             44556667777777


Q ss_pred             HHcCCHHHHHHHHhc
Q psy12891        541 AYSGNENVVRLLLNS  555 (567)
Q Consensus       541 ~~~~~~~~v~~Ll~~  555 (567)
                      +..|+.+++++|+++
T Consensus       175 ~~~~~~~~v~~Ll~~  189 (192)
T 2rfm_A          175 RIFGRQEVIKIFTEV  189 (192)
T ss_dssp             HHTTCHHHHHHHHHH
T ss_pred             HHhCcHHHHHHHHhc
Confidence            777777777777664

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.96  E-value=8.1e-29  Score=206.97  Aligned_cols=158  Identities=29%  Similarity=0.344  Sum_probs=134.9

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCccCcCCcHHHHH
Q psy12891        382 TKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLA  461 (567)
Q Consensus       382 ~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A  461 (567)
                      ...+.++++.|+..|+.+++++|++.+.+.   +..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|
T Consensus        11 ~~~~~~~l~~A~~~g~~~~v~~Ll~~g~~~---~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A   87 (169)
T 2y1l_E           11 GSDLGKKLLEAARAGRDDEVRILMANGADV---NAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLA   87 (169)
T ss_dssp             --CHHHHHHHHHHHTCHHHHHHHHHTTCCT---TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred             CCcccchHHHHHHcCCHHHHHHHHHCCCCC---CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHH
Confidence            345567888888888888888888876553   33445788999999999999999999999999999999999999999


Q ss_pred             HHcCcHHHHHHHHhcccccccccccCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcccccccCCCCCCCHHHHHH
Q psy12891        462 AQNGHNQVLEEMRSSKALNVYSKKLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAA  541 (567)
Q Consensus       462 ~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~  541 (567)
                      +..|+.+++++|+++|++++.+|..|+||||+|+..++.+++++|++++.+.             +.+|..|.|||++|+
T Consensus        88 ~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-------------~~~~~~g~t~l~~A~  154 (169)
T 2y1l_E           88 ALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADV-------------NAQDKFGKTAFDISI  154 (169)
T ss_dssp             HHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-------------TCCCTTSCCHHHHHH
T ss_pred             HHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-------------CCcCCCCCCHHHHHH
Confidence            9999999999999999999999999999999999999999999999987654             556788999999999


Q ss_pred             HcCCHHHHHHHHhc
Q psy12891        542 YSGNENVVRLLLNS  555 (567)
Q Consensus       542 ~~~~~~~v~~Ll~~  555 (567)
                      ++|+.+++++|++.
T Consensus       155 ~~~~~~~~~~L~~~  168 (169)
T 2y1l_E          155 DNGNEDLAEILQKL  168 (169)
T ss_dssp             HTTCHHHHHHHHTC
T ss_pred             HhCCHHHHHHHHHc
Confidence            99999999999874

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.96  E-value=8.3e-29  Score=211.95  Aligned_cols=163  Identities=21%  Similarity=0.247  Sum_probs=116.6

Q ss_pred             hhhhhhcCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCcCCCCHHHHHHHcCCHHHHHHHHHhCCCCccccCCCCCcHHH
Q psy12891        311 IDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAH  390 (567)
Q Consensus       311 ~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~  390 (567)
                      ++..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..++.+++++|++.+++ ++.          
T Consensus        28 ~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~----------   96 (192)
T 2rfm_A           28 RNYRDSYNRTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSN-VNT----------   96 (192)
T ss_dssp             HTCCCTTCCCHHHHHHHHTCGGGHHHHHHHHCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC-TTC----------
T ss_pred             HhCcCCCCCCHHHHHHHcCCHHHHHHHHHhccccccccccCccHHHHHHHcCCHHHHHHHHHCCCC-CCC----------
Confidence            444555666666666666666666666666666666666666666666666666666666655443 222          


Q ss_pred             HHHHcCCHHHHHHHHhcCCCcccccCCCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCccCcCCcHHHHHHHcCcHHHH
Q psy12891        391 IAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVL  470 (567)
Q Consensus       391 ~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v  470 (567)
                                                .+..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|+.+++
T Consensus        97 --------------------------~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v  150 (192)
T 2rfm_A           97 --------------------------KDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIV  150 (192)
T ss_dssp             --------------------------CCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHH
T ss_pred             --------------------------CCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHH
Confidence                                      233566777777777888888888888888888888888888888888888888


Q ss_pred             HHHHhcccccccccccCCcHHHHHHHcCCHHHHHHHHhcC
Q psy12891        471 EEMRSSKALNVYSKKLGVTALHVAAYFGQADTVRELLSHV  510 (567)
Q Consensus       471 ~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~  510 (567)
                      ++|+++|++++.+|..|+|||++|+..|+.+++++|++++
T Consensus       151 ~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~  190 (192)
T 2rfm_A          151 KKLLELGADISARDLTGLTAEASARIFGRQEVIKIFTEVR  190 (192)
T ss_dssp             HHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHCCCCCCCcCCCCCCHHHHHHHhCcHHHHHHHHhcc
Confidence            8888888888888888888888888888888888887753

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.96  E-value=1.1e-28  Score=206.11  Aligned_cols=158  Identities=26%  Similarity=0.348  Sum_probs=141.4

Q ss_pred             CCCChhhHHhhcCChhHHHHHHhhcCCCCChhhhHhhhcCchHHHHHHHhcCCCCCCCCCCCChHHHHHHHhCCHHHHHH
Q psy12891          9 LRETPLHIAARVKDGDRCALMLLKSGAGPNLTNIAARVKDGDRCALMLLKSGAGPNLTTDDGQTPVHAAAKYGNLVTLQL   88 (567)
Q Consensus         9 ~~~t~L~~A~~~g~~~~v~~~L~~~g~~~~~~~~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~   88 (567)
                      .|.||||.||..|+.+.+.                           .|++.|++++.++..|+||||+|+..|+.+++++
T Consensus         2 ~~~t~L~~A~~~g~~~~v~---------------------------~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~   54 (167)
T 3v31_A            2 ANSLSVHQLAAQGEMLYLA---------------------------TRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEF   54 (167)
T ss_dssp             TTCCCHHHHHHTTCHHHHH---------------------------HHHHHSSCTTCCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred             CCcchHHHHHHCCCHHHHH---------------------------HHHHcCCCcCCCCCCCCCHHHHHHHCCCHHHHHH
Confidence            4789999999999988444                           4778888999999999999999999999999999


Q ss_pred             HHHcCCCCCCCCCCCCChhHHHHhcCchhHHHHHHHhhhhhhhhHHhhhhcccccccccHHHHHHHhCCccccccccccc
Q psy12891         89 LLEDGGDPMYKNKIGETPLHLASRNCKAEVVDLLIQFVQNISQEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKED  168 (567)
Q Consensus        89 Ll~~ga~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~  168 (567)
                      |+++|++++..+..|.||||+|+..|+.+++++|+++|++         ++.++..|.||||+|+.           .++
T Consensus        55 Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~---------~~~~~~~g~t~L~~A~~-----------~~~  114 (167)
T 3v31_A           55 LLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVD---------VNEYDWNGGTPLLYAVH-----------GNH  114 (167)
T ss_dssp             HHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCC---------TTCCCTTSCCHHHHHHH-----------TTC
T ss_pred             HHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHHCCCC---------CCcCCCCCCCHHHHHHH-----------cCC
Confidence            9999999999999999999999999999999999999887         67889999999999998           456


Q ss_pred             HHHHHHHHHcCCCccccccCCCccHHHHHHhcCCHHHHHHHHHhcc
Q psy12891        169 QKTVKLLLEAGADVSLQTKQNHETAFHYCAVAGNNDVLTGMLEQMS  214 (567)
Q Consensus       169 ~~~v~~Ll~~g~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~  214 (567)
                      .+++++|+++|++++..+.. |.||+++|+..|+.+++++|++++.
T Consensus       115 ~~~v~~Ll~~g~~~~~~~~~-g~t~l~~A~~~~~~~~~~~L~~~~~  159 (167)
T 3v31_A          115 VKCVKMLLESGADPTIETDS-GYNSMDLAVALGYRSVQQVIESHLL  159 (167)
T ss_dssp             HHHHHHHHHTTCCTTCCCTT-SCCHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCCCCcCCC-CCCHHHHHHHcCcHHHHHHHHHHHH
Confidence            67799999999999876554 5899999999999999999998754

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.96  E-value=5.7e-32  Score=252.60  Aligned_cols=190  Identities=15%  Similarity=0.126  Sum_probs=151.7

Q ss_pred             cCchHHHHHHHhcCCCCCCCCCCCChHHHHHHHhCCHHHHHHHHHcCCCC---CCCCCCCCChhHHHHhcCchhHHHHHH
Q psy12891         47 KDGDRCALMLLKSGAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDP---MYKNKIGETPLHLASRNCKAEVVDLLI  123 (567)
Q Consensus        47 ~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~---~~~~~~g~t~L~~A~~~~~~~iv~~Ll  123 (567)
                      .+..+++++++++|++.       .||||+|+..|+.++|++|+++|+..   +..+..|.||||+|+..|+.++|++|+
T Consensus        76 ~~~~~~~~~l~~~g~~~-------~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa~~G~~eiv~~Ll  148 (376)
T 2aja_A           76 RNAKQLWSDAHKKGIKS-------EVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLC  148 (376)
T ss_dssp             TTCTTHHHHHHHHTCCH-------HHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             CCCHHHHHHHHHcCCCc-------CCHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhccCCCCHHHHHHHcCCHHHHHHHH
Confidence            46778899999998764       59999999999999999999999832   234456778999999999999999999


Q ss_pred             HhhhhhhhhHHhhhhcccccccccHHHHHHHhCCcccccccccccHHHHHHHHHcCCCccc--cccCCCccHHHHHH-hc
Q psy12891        124 QFVQNISQEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGADVSL--QTKQNHETAFHYCA-VA  200 (567)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~--~~~~~~~~~l~~a~-~~  200 (567)
                      ++|++....    .++.  .+ .||||+|+.           .++.++|++|+++|++++.  .+. .|.||||+|+ .+
T Consensus       149 ~~gad~~~~----~i~~--~~-~TpLh~Aa~-----------~G~~eiv~~Ll~~ga~~~~~~~d~-~g~TpL~~Aa~~~  209 (376)
T 2aja_A          149 ELAPTEIMA----MIQA--EN-YHAFRLAAE-----------NGHLHVLNRLCELAPTEATAMIQA-ENYYAFRWAAVGR  209 (376)
T ss_dssp             HSCTTTHHH----HHSH--HH-HHHHHHHHH-----------TTCHHHHHHHHHSCGGGHHHHHHH-HHHHHHHHHHSTT
T ss_pred             hCCCCcccc----ccCC--CC-CCHHHHHHH-----------CCCHHHHHHHHHcCCccchhccCC-CCCCHHHHHHHHC
Confidence            999642110    0222  22 899999999           5567779999999999775  333 4589999999 99


Q ss_pred             CCHHHHHHHHHhccCcchhhhhhcCCCCCChHHHHHHhcCcHHHHHHHHhCCCCCCccCCCCCCHHHHHHHcCCeeeec
Q psy12891        201 GNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVSS  279 (567)
Q Consensus       201 ~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~  279 (567)
                      |+.+++++|++.+.             .+.|||++|+..|+.+++++|+++|++++..+    +++++|+..|+.+++.
T Consensus       210 G~~eiv~~Ll~~ga-------------~~~taL~~Aa~~g~~evv~lL~~~ga~~~~~~----~~l~~A~~~g~~~vv~  271 (376)
T 2aja_A          210 GHHNVINFLLDCPV-------------MLAYAEIHEFEYGEKYVNPFIARHVNRLKEMH----DAFKLSNPDGVFDLVT  271 (376)
T ss_dssp             CCHHHHHHHTTSHH-------------HHHHHHHCTTTTTTTTHHHHHHHHHHHHHHHH----TTTTTTSSSSCCCCSS
T ss_pred             CCHHHHHHHHhCCC-------------ccchHHHHHHHCCCHHHHHHHHhcCccccccc----HHHHHHHHCCChhhhc
Confidence            99999999998642             16799999999999999999999998876654    3677788888877654

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.96  E-value=9e-29  Score=203.02  Aligned_cols=150  Identities=27%  Similarity=0.285  Sum_probs=120.2

Q ss_pred             CcHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCccCcCCcHHHHHHHcC
Q psy12891        386 NTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNG  465 (567)
Q Consensus       386 ~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~  465 (567)
                      .++|+.|+..|+.+++++|++.+.+..    .+..|.||||+|+..|+.+++++|+++|++++..+..|+||||+|+..|
T Consensus         3 ~~~L~~A~~~g~~~~v~~Ll~~g~~~~----~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~   78 (153)
T 1awc_B            3 GKKLLEAARAGQDDEVRILMANGAPFT----TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEG   78 (153)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHTCCCC----CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHT
T ss_pred             cHHHHHHHHcCCHHHHHHHHHcCCCCC----cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcC
Confidence            467777777777777777777765422    3446778888888888888888888888888888888888888888888


Q ss_pred             cHHHHHHHHhcccccccccccCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcccccccCCCCCCCHHHHHHHcCC
Q psy12891        466 HNQVLEEMRSSKALNVYSKKLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGN  545 (567)
Q Consensus       466 ~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~  545 (567)
                      +.+++++|+++|++++.+|..|+||||+|+..++.+++++|++++++.             +.+|..|.|||++|+++|+
T Consensus        79 ~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-------------~~~~~~g~t~l~~A~~~~~  145 (153)
T 1awc_B           79 HANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADV-------------HTQSKFCKTAFDISIDNGN  145 (153)
T ss_dssp             CHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-------------TCCCTTSCCHHHHHHHTTC
T ss_pred             hHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-------------cccCCCCCCHHHHHHHcCC
Confidence            888888888888888888888888888888888888888888886654             4567788888888888888


Q ss_pred             HHHHHHH
Q psy12891        546 ENVVRLL  552 (567)
Q Consensus       546 ~~~v~~L  552 (567)
                      .+++++|
T Consensus       146 ~~i~~~L  152 (153)
T 1awc_B          146 EDLAEIL  152 (153)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            8888876

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.96  E-value=9.4e-32  Score=235.54  Aligned_cols=199  Identities=24%  Similarity=0.185  Sum_probs=167.0

Q ss_pred             HHHHHhcCCCCCCCC---CCCChHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCChhHHHHhcCchhHHHHHHHhhhhh
Q psy12891         53 ALMLLKSGAGPNLTT---DDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVVDLLIQFVQNI  129 (567)
Q Consensus        53 ~~~Ll~~g~~~~~~~---~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~~~~~  129 (567)
                      ++.|+++|++++..+   .++.||||+|+..|+.++|++|+++|++++.+|..|.||||+|+..|+.+++++|++.|++ 
T Consensus         1 v~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~-   79 (229)
T 2vge_A            1 MRSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGAN-   79 (229)
T ss_dssp             ---------CCCCCCCTTSCHHHHHHHHHHHTCHHHHHHHHHHSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-
T ss_pred             CeehhccCCCCccccccccchhHHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC-
Confidence            356788888887554   4677889999999999999999999999999999999999999999999999999999988 


Q ss_pred             hhhHHhhhhcccccccccHHHHHHHhCCcccccccccccHHHHHHHHHcCCCccccccCCCccHHHHH--HhcCCHHHHH
Q psy12891        130 SQEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGADVSLQTKQNHETAFHYC--AVAGNNDVLT  207 (567)
Q Consensus       130 ~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~l~~a--~~~~~~~~~~  207 (567)
                              ++.++..|.||||+|+..           ++.+++++|+++|++++..+...|.|||++|  +..|+.++++
T Consensus        80 --------~n~~d~~g~tpLh~A~~~-----------g~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~a~~~~~~~~v~  140 (229)
T 2vge_A           80 --------VNSPDSHGWTPLHCAASC-----------NDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCAT  140 (229)
T ss_dssp             --------TTCCCTTCCCHHHHHHHT-----------TCHHHHHHHHTTTCCTTCCCSSTTCCTGGGCCTTSTTHHHHHH
T ss_pred             --------CCCCCCCCCCHHHHHHHc-----------CCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHHhcChHHHHH
Confidence                    788899999999999984           5677799999999999988777789999999  9999999999


Q ss_pred             HHHHhccCcchhhhhhcCCCCCChHHHHHHhcCcHHHHHHHHhCCCC--CCccCCCCCCHHHHHHHcCCeeeecc
Q psy12891        208 GMLEQMSGTEISKALNKQTSIGWTPLLIACNRGHMELVNTMLNNHAR--VDVFDQEGRSALHLAAEHGYLKVSSG  280 (567)
Q Consensus       208 ~Ll~~~~~~~~~~~~~~~~~~~~~~L~~A~~~~~~~~v~~Ll~~g~~--~~~~~~~~~t~l~~a~~~~~~~~~~~  280 (567)
                      +|++.+++.      +..+..+.++++.++...   ..++|++.|++  ++.+|..|+|||++|+..|+.++++.
T Consensus       141 ~Ll~~ga~~------~~~~~~~~~~l~~~~~~~---~~~~ll~~ga~~~~~~~d~~G~TpL~~A~~~g~~~~v~~  206 (229)
T 2vge_A          141 YLADVEQSM------GLMNSGAVYALWDYSAEF---GDELSFREGESVTVLRRDGPEETDWWWAALHGQEGYVPR  206 (229)
T ss_dssp             HHHHHHHHT------TTSGGGEEEESSCBCCSS---TTBCCBCTTCEEEEEESSCTTCSSEEEEEETTEEEEEEG
T ss_pred             HHHHcCCCc------ccccCCchHHHHHHhhcc---ccccCccccccccccccCCCcccHHHHHHHcCCcceeeh
Confidence            999987654      456667788888655443   33678889988  67789999999999999999999985

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.96  E-value=1.3e-28  Score=206.65  Aligned_cols=168  Identities=22%  Similarity=0.278  Sum_probs=116.0

Q ss_pred             CCHHHHHHHcCcHHHHHHHHHcCCC-CCCcCcCCCCHHHHHHHcCCHHHHHHHHHhCCCCccccCCCCCcHHHHHHHcCC
Q psy12891        319 QTPLHLAAEAGQLQVCKLLLDLGAS-IDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGS  397 (567)
Q Consensus       319 ~t~L~~a~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~  397 (567)
                      .+||+.|+..|+.+++++|++.|.+ ++..+..|.||||+|+..++.+++++|++.+.+ ++..+..|.||||+|+..++
T Consensus         3 ~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~   81 (172)
T 3v30_A            3 SLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGAD-PHILAKERESALSLASTGGY   81 (172)
T ss_dssp             -CCHHHHHHTTCHHHHHHHHTTCSGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC-TTCCCTTCCCHHHHHHHTTC
T ss_pred             hhhHHHHHHcCCHHHHHHHHHcCcccccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-chhhcccCCCHHHHHHHCCC
Confidence            4778888888888888888887776 677777788888888888888888888877765 56666677777777777777


Q ss_pred             HHHHHHHHhcCCCcccccCCCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCccCcCCcHHHHHHHcCcHHHHHHHHhcc
Q psy12891        398 VGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSK  477 (567)
Q Consensus       398 ~~~~~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~  477 (567)
                      .+++++|++.+.+.   ...+..|.||||+|+..|+.+++++|+++|++++.++..|.|||++|+..|+.+++++|++++
T Consensus        82 ~~~v~~Ll~~g~~~---~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~  158 (172)
T 3v30_A           82 TDIVGLLLERDVDI---NIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQVIENHI  158 (172)
T ss_dssp             HHHHHHHHTTTCCT---TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCC---CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHhCcHHHHHHHHHHH
Confidence            77777777665442   233345667777777777777777777777777777777777777777777777777777777


Q ss_pred             cccccccccCCcH
Q psy12891        478 ALNVYSKKLGVTA  490 (567)
Q Consensus       478 ~~~~~~~~~g~t~  490 (567)
                      ++...++..|.||
T Consensus       159 ~~~~~~~~~~~~p  171 (172)
T 3v30_A          159 LKLFQSNLVPADP  171 (172)
T ss_dssp             HHHSCC-------
T ss_pred             HHHhcccCCCCCC
Confidence            6666666555554

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.96  E-value=1.3e-28  Score=203.16  Aligned_cols=154  Identities=25%  Similarity=0.258  Sum_probs=132.0

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCccCcCCcHHHHHHHc
Q psy12891        385 GNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQN  464 (567)
Q Consensus       385 ~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~  464 (567)
                      +.++|+.|+..|+.+++++|++. . .......+..|.||||+ +..|+.+++++|+++|++++.++..|.||||+|+..
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~-~-~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~   78 (156)
T 1bd8_A            2 AGDRLSGAAARGDVQEVRRLLHR-E-LVHPDALNRFGKTALQV-MMFGSTAIALELLKQGASPNVQDTSGTSPVHDAART   78 (156)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHT-T-CCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT
T ss_pred             cchHHHHHHHhCCHHHHHHHHHh-h-CcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHc
Confidence            34788888888888888888876 2 12334445578899999 889999999999999999999999999999999999


Q ss_pred             CcHHHHHHHHhcccccccccccCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcccccccCCCCCCCHHHHHHHcC
Q psy12891        465 GHNQVLEEMRSSKALNVYSKKLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSG  544 (567)
Q Consensus       465 ~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~  544 (567)
                      |+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++ .+.             +.+|..|.|||++|++.|
T Consensus        79 ~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~-------------~~~~~~g~t~l~~A~~~~  144 (156)
T 1bd8_A           79 GFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE-SDL-------------HRRDARGLTPLELALQRG  144 (156)
T ss_dssp             TCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTT-SCT-------------TCCCTTSCCHHHHHHHSC
T ss_pred             CcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHhChHHHHHHHHhc-cCC-------------CCcCCCCCCHHHHHHHcC
Confidence            999999999999999999999999999999999999999999987 432             556888999999999999


Q ss_pred             CHHHHHHHHhc
Q psy12891        545 NENVVRLLLNS  555 (567)
Q Consensus       545 ~~~~v~~Ll~~  555 (567)
                      +.+++++|+++
T Consensus       145 ~~~~v~~Ll~~  155 (156)
T 1bd8_A          145 AQDLVDILQGH  155 (156)
T ss_dssp             CHHHHHHHHTT
T ss_pred             cHHHHHHHHhh
Confidence            99999999975

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.96  E-value=1.9e-32  Score=255.79  Aligned_cols=316  Identities=13%  Similarity=0.067  Sum_probs=187.6

Q ss_pred             hhhcCchHHHHHHHhcCCCCCCCCCCCChHHHHHHH-hCCHHHHHHHHHcCCCCCCCCCCCCChhHHHHhcCchhHHHHH
Q psy12891         44 ARVKDGDRCALMLLKSGAGPNLTTDDGQTPVHAAAK-YGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVVDLL  122 (567)
Q Consensus        44 a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~-~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~~~~~iv~~L  122 (567)
                      .+.....+.+..++....+++..  .+.+++++|.. .++.+++++|+++|++.       .||||+|+..|+.++|++|
T Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~--~~ll~~~~a~~~~~~~~~~~~l~~~g~~~-------~T~Lh~Aa~~G~~e~v~~L  111 (376)
T 2aja_A           41 LMTLSYKEAIHIFLPGTKNMEQV--RQLLCLYYAHYNRNAKQLWSDAHKKGIKS-------EVICFVAAITGCSSALDTL  111 (376)
T ss_dssp             HHHSCHHHHHHHCCCCSSHHHHH--HHHHHHHHHHTTTTCTTHHHHHHHHTCCH-------HHHHHHHHHHCCHHHHHHH
T ss_pred             hhhccHHHHHHHHhcCCCCHHHH--HHHHHHHHHHhcCCCHHHHHHHHHcCCCc-------CCHHHHHHHcCCHHHHHHH
Confidence            33344556666666554443322  24568888876 57899999999988754       4899999999999999999


Q ss_pred             HHhhhhhhhhHHhhhhcccccccccHHHHHHHhCCcccccccccccHHHHHHHHHcCCCcc---ccccCCCccHHHHHHh
Q psy12891        123 IQFVQNISQEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGADVS---LQTKQNHETAFHYCAV  199 (567)
Q Consensus       123 l~~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~---~~~~~~~~~~l~~a~~  199 (567)
                      ++.|+...      .....+..+.||||+|+.           .++.++|++|+++|+++.   .... . .||||+|+.
T Consensus       112 l~~ga~~~------~~~~~~~~~~tpL~~Aa~-----------~G~~eiv~~Ll~~gad~~~~~i~~~-~-~TpLh~Aa~  172 (376)
T 2aja_A          112 CLLLTSDE------IVKVIQAENYQAFRLAAE-----------NGHLHVLNRLCELAPTEIMAMIQAE-N-YHAFRLAAE  172 (376)
T ss_dssp             TTC--CCS------SCC--CHHHHHHHHHHHH-----------TTCHHHHHHHHHSCTTTHHHHHSHH-H-HHHHHHHHH
T ss_pred             HHcCCcHH------HHHHhccCCCCHHHHHHH-----------cCCHHHHHHHHhCCCCccccccCCC-C-CCHHHHHHH
Confidence            99877310      012335567789999998           456667999999997632   2222 2 788888888


Q ss_pred             cCCHHHHHHHHHhccCcchhhhhhcCCCCCChHHHHHH-hcCcHHHHHHHHhCCCCCCccCCCCCCHHHHHHHcCCeeee
Q psy12891        200 AGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIAC-NRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVS  278 (567)
Q Consensus       200 ~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~L~~A~-~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~  278 (567)
                      .|+.+++++|++++++...    ...+..|.||||+|+ ..|+.+++++|++.|++                        
T Consensus       173 ~G~~eiv~~Ll~~ga~~~~----~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~~ga~------------------------  224 (376)
T 2aja_A          173 NGHLHVLNRLCELAPTEAT----AMIQAENYYAFRWAAVGRGHHNVINFLLDCPVM------------------------  224 (376)
T ss_dssp             TTCHHHHHHHHHSCGGGHH----HHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHHH------------------------
T ss_pred             CCCHHHHHHHHHcCCccch----hccCCCCCCHHHHHHHHCCCHHHHHHHHhCCCc------------------------
Confidence            8888888888887664321    013444678888888 88888888888775421                        


Q ss_pred             ccccccccccccCCCCCCCCCCCccccchhhhhhhhhhcCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCcCCCCHHHHH
Q psy12891        279 SGKSLKHSVMSFRLPPHNIIPNGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVA  358 (567)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A  358 (567)
                                                             +.|||+.|+.+|+.+++++|+++|++++..+    ++++.|
T Consensus       225 ---------------------------------------~~taL~~Aa~~g~~evv~lL~~~ga~~~~~~----~~l~~A  261 (376)
T 2aja_A          225 ---------------------------------------LAYAEIHEFEYGEKYVNPFIARHVNRLKEMH----DAFKLS  261 (376)
T ss_dssp             ---------------------------------------HHHHHHCTTTTTTTTHHHHHHHHHHHHHHHH----TTTTTT
T ss_pred             ---------------------------------------cchHHHHHHHCCCHHHHHHHHhcCccccccc----HHHHHH
Confidence                                                   2267777777788888888888887775543    245556


Q ss_pred             HHcCCHHHHHHHHHhCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCCCCHHHHHHHcCcHHHHH
Q psy12891        359 AQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVR  438 (567)
Q Consensus       359 ~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~  438 (567)
                      +..|+.+++.....                      .....+++.++..+..                     +..+.++
T Consensus       262 ~~~g~~~vv~~~~~----------------------~~~~~~~~~li~~~~~---------------------~~~~~~~  298 (376)
T 2aja_A          262 NPDGVFDLVTKSEC----------------------LQGFYMLRNLIRRNDE---------------------VLLDDIR  298 (376)
T ss_dssp             SSSSCCCCSSHHHH----------------------HHHHHHHHHHHHHCCG---------------------GGHHHHH
T ss_pred             HHCCChhhhcHHhh----------------------hhhHHHHHHHHHcchh---------------------hHHHHHH
Confidence            66665543321000                      0001123333332110                     1133344


Q ss_pred             HHH---------HcCCCCCCccCcCCcHHHHHHHcCcHHHHHHHHhcccccccccccCCcHHHHHHHcCCHHHHHHHHh
Q psy12891        439 VLV---------KAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLGVTALHVAAYFGQADTVRELLS  508 (567)
Q Consensus       439 ~Ll---------~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~  508 (567)
                      +|+         +.|++++    .+.|||++|+..|+.+++++|++.|   ..++..+.|++.+|-..|..++++.-+.
T Consensus       299 ~Ll~~~~vk~l~~~g~~~n----~~~~~L~~A~~~g~~e~v~lLl~~~---~v~~~~~~~~~~~~~~~~~~~~~~~~~~  370 (376)
T 2aja_A          299 FLLSIPGIKALAPTATIPG----DANELLRLALRLGNQGACALLLSIP---SVLALTKANNYYINETGGRLDLRAVALE  370 (376)
T ss_dssp             HHHTSTTTGGGSSCCSSTT----CCCHHHHHHHHHTCTTHHHHHTTSH---HHHHSCC---------------------
T ss_pred             HHHhChhhhhhhccCCCCC----CccHHHHHHHHcCcHHHHHHHHcCh---HHHHHHHHhccccccccccccHHHHHHH
Confidence            444         3555554    3558899999999999999999876   4455668889999999998888876544

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.96  E-value=7.8e-32  Score=236.07  Aligned_cols=194  Identities=18%  Similarity=0.080  Sum_probs=170.0

Q ss_pred             CCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCcCCCCHHHHHHHcCCHHHHHHHHHhCCCCccccCCCCCcHHHHHHHcCC
Q psy12891        318 KQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGS  397 (567)
Q Consensus       318 ~~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~  397 (567)
                      +.|||+.|+..|+.+++++|++.|++++..+..|.||||+|+..++.+++++|++.+.+ ++..+..|.||||+|+..|+
T Consensus        21 ~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~-~n~~d~~g~tpLh~A~~~g~   99 (229)
T 2vge_A           21 PLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGAN-VNSPDSHGWTPLHCAASCND   99 (229)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHTTC
T ss_pred             hhHHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHcCC
Confidence            44789999999999999999999999999999999999999999999999999999877 78889999999999999999


Q ss_pred             HHHHHHHHhcCCCcccccCCCCCCCCHHHHH--HHcCcHHHHHHHHHcCCCCCCccCcCCcHHHHHHHcCcHHHHHHHHh
Q psy12891        398 VGVIEELMKFDRSGVISARNRVTEATPLQLA--AEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRS  475 (567)
Q Consensus       398 ~~~~~~ll~~~~~~~~~~~~~~~~~t~L~~A--~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~  475 (567)
                      .+++++|++.+.+..  ...+..|.||||+|  +..|+.+++++|+++|++++..+..|.||++.++....   .++|++
T Consensus       100 ~~~v~~Ll~~ga~~~--~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~l~~~~~~~~---~~~ll~  174 (229)
T 2vge_A          100 TVICMALVQHGAAIF--ATTLSDGATAFEKCDPYREGYADCATYLADVEQSMGLMNSGAVYALWDYSAEFG---DELSFR  174 (229)
T ss_dssp             HHHHHHHHTTTCCTT--CCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHHHHTTTSGGGEEEESSCBCCSST---TBCCBC
T ss_pred             HHHHHHHHHcCCCcc--cccCCCCCCHHHHHHHHhcChHHHHHHHHHcCCCcccccCCchHHHHHHhhccc---cccCcc
Confidence            999999999877633  33335899999999  99999999999999999999999999999987655543   367889


Q ss_pred             cccc--cccccccCCcHHHHHHHcCCHHHHHH-HHhcCCCCCCCC
Q psy12891        476 SKAL--NVYSKKLGVTALHVAAYFGQADTVRE-LLSHVPGTVKSD  517 (567)
Q Consensus       476 ~~~~--~~~~~~~g~t~l~~A~~~~~~~~~~~-Ll~~~~~~~~~~  517 (567)
                      .|++  ++.+|..|+||||+|+..|+.++|+. +++..|+...+.
T Consensus       175 ~ga~~~~~~~d~~G~TpL~~A~~~g~~~~v~~~~l~~~p~~~~~~  219 (229)
T 2vge_A          175 EGESVTVLRRDGPEETDWWWAALHGQEGYVPRNYFGLFPRVKPQR  219 (229)
T ss_dssp             TTCEEEEEESSCTTCSSEEEEEETTEEEEEEGGGEESSCCCC---
T ss_pred             ccccccccccCCCcccHHHHHHHcCCcceeehhhhhhCCCCCCch
Confidence            9987  66789999999999999999999987 667776665443

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.96  E-value=5.8e-29  Score=207.25  Aligned_cols=160  Identities=26%  Similarity=0.321  Sum_probs=135.8

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCccCcCCcHHHHH
Q psy12891        382 TKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLA  461 (567)
Q Consensus       382 ~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A  461 (567)
                      +.++.++|+.|+..|+.+++++|++....  .....+..|.||||+|+..|+.+++++|+++|++++..+..|+||||+|
T Consensus         5 ~~~~~~~l~~A~~~g~~~~v~~ll~~~~~--~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A   82 (165)
T 3twr_A            5 NSEADRQLLEAAKAGDVETVKKLCTVQSV--NCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNA   82 (165)
T ss_dssp             -CHHHHHHHHHHHHTCHHHHHHHCCTTTT--TCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred             cchhhHHHHHHHHhCCHHHHHHHHHcCCC--CccccccCCCCHHHHHHHcChHHHHHHHHhcCCCCCccCCCCCCHHHHH
Confidence            45677888888888888888888875432  3344455678999999999999999999999999999999999999999


Q ss_pred             HHcCcHHHHHHHHhcccccccccccCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcccccccCCCCCCCHHHHHH
Q psy12891        462 AQNGHNQVLEEMRSSKALNVYSKKLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAA  541 (567)
Q Consensus       462 ~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~  541 (567)
                      +..|+.+++++|+++|++++.+|..|+||||+|+..++.+++++|++++.+.             +.+|..|.|||++|+
T Consensus        83 ~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-------------~~~~~~g~t~l~~a~  149 (165)
T 3twr_A           83 CSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADP-------------TKKNRDGNTPLDLVK  149 (165)
T ss_dssp             HHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-------------TCCCTTSCCTGGGSC
T ss_pred             HHcCcHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-------------cccCCCCCChhHhHh
Confidence            9999999999999999999999999999999999999999999999987654             567889999999987


Q ss_pred             HcCCHHHHHHHHhccCC
Q psy12891        542 YSGNENVVRLLLNSAGV  558 (567)
Q Consensus       542 ~~~~~~~v~~Ll~~~g~  558 (567)
                      + |+.+++++|+++ |+
T Consensus       150 ~-~~~~i~~~L~~~-gA  164 (165)
T 3twr_A          150 D-GDTDIQDLLRGD-AA  164 (165)
T ss_dssp             T-TCHHHHHHHHTC---
T ss_pred             c-CChHHHHHHhhc-cc
Confidence            7 899999999986 54

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.96  E-value=6.7e-29  Score=206.39  Aligned_cols=136  Identities=24%  Similarity=0.350  Sum_probs=78.9

Q ss_pred             HHhcCCCCCCCCCCCChHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCChhHHHHhcCchhHHHHHHHhhhhhhhhHHh
Q psy12891         56 LLKSGAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVVDLLIQFVQNISQEKVL  135 (567)
Q Consensus        56 Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~~~~~~~~~~~  135 (567)
                      |+++|++++.++..|+||||+|+. |+.+++++|+++|++++.++..|.||||+|+..|+.+++++|+++|++       
T Consensus        24 Ll~~~~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-------   95 (162)
T 1ihb_A           24 LLQNNVNVNAQNGFGRTALQVMKL-GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQAD-------   95 (162)
T ss_dssp             HTTSCCCTTCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-------
T ss_pred             HHhCCCCccccCccCccHHHHHHc-CcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-------
Confidence            455566666666666666666666 666666666666666666666666666666666666666666666655       


Q ss_pred             hhhcccccccccHHHHHHHhCCcccccccccccHHHHHHHHHcCCCccccccCCCccHHHHHHhcCCHHHHHHHHHh
Q psy12891        136 EYVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGADVSLQTKQNHETAFHYCAVAGNNDVLTGMLEQ  212 (567)
Q Consensus       136 ~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~  212 (567)
                        ++.++..|.||||+|+.           .++.+++++|+++|++.....+..|.|||++|+..|+.+++++|+++
T Consensus        96 --~~~~~~~g~t~L~~A~~-----------~~~~~~v~~Ll~~g~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~  159 (162)
T 1ihb_A           96 --VNIEDNEGNLPLHLAAK-----------EGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQAN  159 (162)
T ss_dssp             --TTCCCTTSCCHHHHHHH-----------TTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred             --CCCcCCCCCCHHHHHHH-----------cCCHHHHHHHHHccCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHHh
Confidence              45555566666666665           23344466666666553212222234444444444444444444444

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.96  E-value=3.7e-28  Score=202.98  Aligned_cols=157  Identities=32%  Similarity=0.430  Sum_probs=122.2

Q ss_pred             cCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCcCCCCHHHHHHHcCCHHHHHHHHHhCCCCccccCCCCCcHHHHHHHcC
Q psy12891        317 RKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQG  396 (567)
Q Consensus       317 ~~~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~  396 (567)
                      .+.++|+.|++.|+.+++++|+++|++++..+..|.||||+|+..++.+++++|++.+.+ ++..+.             
T Consensus        13 ~~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~-------------   78 (169)
T 2y1l_E           13 DLGKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGAD-VNAVDH-------------   78 (169)
T ss_dssp             CHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCT-------------
T ss_pred             cccchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCccCC-------------
Confidence            445789999999999999999999999988888888888888888888888888887654 233332             


Q ss_pred             CHHHHHHHHhcCCCcccccCCCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCccCcCCcHHHHHHHcCcHHHHHHHHhc
Q psy12891        397 SVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSS  476 (567)
Q Consensus       397 ~~~~~~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~  476 (567)
                                             .|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|+++
T Consensus        79 -----------------------~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~  135 (169)
T 2y1l_E           79 -----------------------AGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKN  135 (169)
T ss_dssp             -----------------------TSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred             -----------------------CCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence                                   456777777777777777777777777777777777777777777777777777777


Q ss_pred             ccccccccccCCcHHHHHHHcCCHHHHHHHHhcC
Q psy12891        477 KALNVYSKKLGVTALHVAAYFGQADTVRELLSHV  510 (567)
Q Consensus       477 ~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~  510 (567)
                      |++++.+|..|.|||++|+..++.+++++|++.|
T Consensus       136 g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~G  169 (169)
T 2y1l_E          136 GADVNAQDKFGKTAFDISIDNGNEDLAEILQKLN  169 (169)
T ss_dssp             TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTC-
T ss_pred             CCCCCCcCCCCCCHHHHHHHhCCHHHHHHHHHcC
Confidence            7777777777777777777777777777777653

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.95  E-value=1.7e-27  Score=195.41  Aligned_cols=149  Identities=29%  Similarity=0.349  Sum_probs=108.3

Q ss_pred             CHHHHHHHcCCHHHHHHHHHhCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCCCCHHHHHHHcC
Q psy12891        353 KPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGG  432 (567)
Q Consensus       353 t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~~  432 (567)
                      ++|+.|+..|+.+++++|++.+... . .+..|.||||+|+..++.+++++|++.+.+.   ...+..|.||||+|+..|
T Consensus         4 ~~L~~A~~~g~~~~v~~Ll~~g~~~-~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~---~~~~~~g~t~L~~A~~~~   78 (153)
T 1awc_B            4 KKLLEAARAGQDDEVRILMANGAPF-T-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSR---DARTKVDRTPLHMAASEG   78 (153)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHTCCC-C-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCT---TCCCTTCCCHHHHHHHHT
T ss_pred             HHHHHHHHcCCHHHHHHHHHcCCCC-C-cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC---CCCCCCCCCHHHHHHHcC
Confidence            4455555555555555555544432 1 3444555555555555555555555544332   223346778888888888


Q ss_pred             cHHHHHHHHHcCCCCCCccCcCCcHHHHHHHcCcHHHHHHHHhcccccccccccCCcHHHHHHHcCCHHHHHHH
Q psy12891        433 HANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLGVTALHVAAYFGQADTVREL  506 (567)
Q Consensus       433 ~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~L  506 (567)
                      +.+++++|+++|++++.++..|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|
T Consensus        79 ~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~L  152 (153)
T 1awc_B           79 HANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             CHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             hHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHh
Confidence            88999999999999998899999999999999999999999999998888888899999999999999998887

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.95  E-value=3.6e-28  Score=202.42  Aligned_cols=160  Identities=22%  Similarity=0.212  Sum_probs=123.7

Q ss_pred             CcCCCCHHHHHHHcCCHHHHHHHHHhCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCCCCHHHH
Q psy12891        348 DDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQL  427 (567)
Q Consensus       348 ~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~t~L~~  427 (567)
                      +..+.|+|+.|+..|+.++++.|++..+......+..|.||||+|+..++.+++++|++.+.+.   ...+..|.||||+
T Consensus         5 ~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~---~~~~~~g~t~L~~   81 (165)
T 3twr_A            5 NSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADV---HAKDKGGLVPLHN   81 (165)
T ss_dssp             -CHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT---TCCCTTSCCHHHH
T ss_pred             cchhhHHHHHHHHhCCHHHHHHHHHcCCCCccccccCCCCHHHHHHHcChHHHHHHHHhcCCCC---CccCCCCCCHHHH
Confidence            3445566666666666666666666555555556666667777777777777777777765442   3334467889999


Q ss_pred             HHHcCcHHHHHHHHHcCCCCCCccCcCCcHHHHHHHcCcHHHHHHHHhcccccccccccCCcHHHHHHHcCCHHHHHHHH
Q psy12891        428 AAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLGVTALHVAAYFGQADTVRELL  507 (567)
Q Consensus       428 A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll  507 (567)
                      |+..|+.+++++|+++|++++..+..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+. ++.+++++|+
T Consensus        82 A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~a~~-~~~~i~~~L~  160 (165)
T 3twr_A           82 ACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVKD-GDTDIQDLLR  160 (165)
T ss_dssp             HHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTGGGSCT-TCHHHHHHHH
T ss_pred             HHHcCcHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCChhHhHhc-CChHHHHHHh
Confidence            999999999999999999999999999999999999999999999999999999999999999999776 8889999998


Q ss_pred             hcCC
Q psy12891        508 SHVP  511 (567)
Q Consensus       508 ~~~~  511 (567)
                      ++++
T Consensus       161 ~~gA  164 (165)
T 3twr_A          161 GDAA  164 (165)
T ss_dssp             TC--
T ss_pred             hccc
Confidence            8753

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.95  E-value=2.4e-27  Score=195.48  Aligned_cols=153  Identities=26%  Similarity=0.297  Sum_probs=119.4

Q ss_pred             CCHHHHHHHcCCHHHHHHHHHhCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCCCCHHHHHHHc
Q psy12891        352 QKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEG  431 (567)
Q Consensus       352 ~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~  431 (567)
                      .|||+.|+..|+.+++++|++..+...+..+..|.||||+ +..++.+++++|++.+.+.   ...+..|.||||+|+..
T Consensus         3 ~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~---~~~~~~g~t~L~~A~~~   78 (156)
T 1bd8_A            3 GDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQV-MMFGSTAIALELLKQGASP---NVQDTSGTSPVHDAART   78 (156)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCT---TCCCTTSCCHHHHHHHT
T ss_pred             chHHHHHHHhCCHHHHHHHHHhhCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCC---CCcCCCCCCHHHHHHHc
Confidence            3556666666666666666655333345555566666666 5666666666666655442   23344788999999999


Q ss_pred             CcHHHHHHHHHcCCCCCCccCcCCcHHHHHHHcCcHHHHHHHHhcccccccccccCCcHHHHHHHcCCHHHHHHHHhc
Q psy12891        432 GHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLGVTALHVAAYFGQADTVRELLSH  509 (567)
Q Consensus       432 ~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~  509 (567)
                      |+.+++++|+++|++++.++..|+||||+|+..|+.+++++|++. ++++.+|..|+||||+|+..|+.+++++|+++
T Consensus        79 ~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~  155 (156)
T 1bd8_A           79 GFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE-SDLHRRDARGLTPLELALQRGAQDLVDILQGH  155 (156)
T ss_dssp             TCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTT-SCTTCCCTTSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred             CcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHhChHHHHHHHHhc-cCCCCcCCCCCCHHHHHHHcCcHHHHHHHHhh
Confidence            999999999999999999999999999999999999999999999 89999999999999999999999999999875

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.95  E-value=1.8e-27  Score=200.99  Aligned_cols=160  Identities=21%  Similarity=0.198  Sum_probs=102.7

Q ss_pred             CCHHHHHHHcCCHHHHHHHHHhCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCCCCHHHHHHHc
Q psy12891        352 QKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEG  431 (567)
Q Consensus       352 ~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~  431 (567)
                      .++|+.|+..|+.+++++|++.++..++..+..|.||||+|+..++.+++++|++.+.+.   ...+..|.||||+|+..
T Consensus         6 ~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~---~~~~~~g~t~L~~A~~~   82 (179)
T 3f6q_A            6 MDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARI---NVMNRGDDTPLHLAASH   82 (179)
T ss_dssp             -CCHHHHHHHTCHHHHHHHHHCTTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT---TCCCTTCCCHHHHHHHT
T ss_pred             HHHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCC---CCcCCCCCCHHHHHHHc
Confidence            344444444444444444444444334444444555555555555555555555444332   22233566777777777


Q ss_pred             CcHHHHHHHHHcCCCCCCccCcCCcHHHHHHHcCcHHHHHHHHhcccccccccccCCcHHHHHHHcCCHHHHHHHHhcCC
Q psy12891        432 GHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLGVTALHVAAYFGQADTVRELLSHVP  511 (567)
Q Consensus       432 ~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~  511 (567)
                      |+.+++++|+++|++++..|..|.||||+|+..|+.+++++|+++|++++.+|..|.|||++|+..++.+++++|++++.
T Consensus        83 ~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~L~~~g~  162 (179)
T 3f6q_A           83 GHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAKAPLRELLRERAEKMGQ  162 (179)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSSBCCTTSCCGGGGSCHHHHHHHHHHHHHTTC
T ss_pred             CCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcchhccCCCCcHHHHHHHHHHHHHHHHHHhhc
Confidence            77777777777777777777777777777777777777777777777777777777777777777777777777777766


Q ss_pred             CCC
Q psy12891        512 GTV  514 (567)
Q Consensus       512 ~~~  514 (567)
                      +..
T Consensus       163 ~~~  165 (179)
T 3f6q_A          163 NLN  165 (179)
T ss_dssp             CCS
T ss_pred             Ccc
Confidence            654

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.95  E-value=2.8e-28  Score=215.99  Aligned_cols=165  Identities=15%  Similarity=0.079  Sum_probs=116.9

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCccCcCCcHHHHHH
Q psy12891        383 KDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAA  462 (567)
Q Consensus       383 ~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~  462 (567)
                      ..|.||||.|+..++.+.++.|++++.+....    ..+.||||.|+..|+.+++++|++.|++++.+|..|+||||+|+
T Consensus         3 ~~g~t~L~~a~~~~~~~~~~~ll~~g~~~~~~----~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~   78 (239)
T 1ycs_B            3 ITGQVSLPPGKRTNLRKTGSERIAHGMRVKFN----PLPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAV   78 (239)
T ss_dssp             --------------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSSCCCCCTTSCCHHHHHH
T ss_pred             ccccccCchhhhhhhHHHHHHHhccCCCcccC----chhhHHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHH
Confidence            35778888888888888888888877664322    35679999999999999999999999999999999999999999


Q ss_pred             HcCcHHHHHHHHhcccccccccccCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcccccccCCCCCC-CHHHHH-
Q psy12891        463 QNGHNQVLEEMRSSKALNVYSKKLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGM-TPLHLA-  540 (567)
Q Consensus       463 ~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~g~-t~l~~A-  540 (567)
                      ..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|++++++.             +..+..|. ||||+| 
T Consensus        79 ~~g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~-------------~~~~~~~~~t~l~~a~  145 (239)
T 1ycs_B           79 CAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAV-------------FAMTYSDMQTAADKCE  145 (239)
T ss_dssp             HHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-------------TCCCSSSCCCHHHHCC
T ss_pred             HcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-------------ceecCCCCcchHHHHH
Confidence            999999999999999999999999999999999999999999999988765             34455555 999999 


Q ss_pred             -HHcCCHHHHHHHHhccCCccccccc
Q psy12891        541 -AYSGNENVVRLLLNSAGVQVDAQTQ  565 (567)
Q Consensus       541 -~~~~~~~~v~~Ll~~~g~~~~~~~~  565 (567)
                       +..|+.+++++|+++ |++++.++.
T Consensus       146 ~~~~g~~~~~~~Ll~~-~a~~~~~~~  170 (239)
T 1ycs_B          146 EMEEGYTQCSQFLYGV-QEKMGIMNK  170 (239)
T ss_dssp             SSSTTCCCHHHHHHHH-HHHTTTTGG
T ss_pred             HhhhccHHHHHHHHHh-hhccccccc
Confidence             888999999999986 999988754

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.95  E-value=3e-28  Score=215.84  Aligned_cols=162  Identities=23%  Similarity=0.243  Sum_probs=116.1

Q ss_pred             CCCCCChhhHHhhcCChhHHHHHHhhcCCCCChhhhHhhhcCchHHHHHHHhcCCCCCCCCCCCChHHHHHHHhCCHHHH
Q psy12891          7 GKLRETPLHIAARVKDGDRCALMLLKSGAGPNLTNIAARVKDGDRCALMLLKSGAGPNLTTDDGQTPVHAAAKYGNLVTL   86 (567)
Q Consensus         7 ~~~~~t~L~~A~~~g~~~~v~~~L~~~g~~~~~~~~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v   86 (567)
                      ...|.||||.|++.|+.+.+.                           .|+++|++++.. ..|.||||.|+..|+.++|
T Consensus         2 ~~~g~t~L~~a~~~~~~~~~~---------------------------~ll~~g~~~~~~-~~~~t~L~~A~~~g~~~~v   53 (239)
T 1ycs_B            2 EITGQVSLPPGKRTNLRKTGS---------------------------ERIAHGMRVKFN-PLPLALLLDSSLEGEFDLV   53 (239)
T ss_dssp             ---------------------------------------------------------------CHHHHHHHHHHTCHHHH
T ss_pred             CccccccCchhhhhhhHHHHH---------------------------HHhccCCCcccC-chhhHHHHHHHHcCCHHHH
Confidence            356999999999999987444                           466777777743 6889999999999999999


Q ss_pred             HHHHHcCCCCCCCCCCCCChhHHHHhcCchhHHHHHHHhhhhhhhhHHhhhhcccccccccHHHHHHHhCCccccccccc
Q psy12891         87 QLLLEDGGDPMYKNKIGETPLHLASRNCKAEVVDLLIQFVQNISQEKVLEYVNSVNEDGASALHYACQVTKAELIPITSK  166 (567)
Q Consensus        87 ~~Ll~~ga~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~  166 (567)
                      ++|++.|++++.+|..|.||||+|+..|+.+++++|+++|++         ++.++..|.||||+|+.           .
T Consensus        54 ~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~---------~~~~d~~g~tpL~~A~~-----------~  113 (239)
T 1ycs_B           54 QRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVN---------VNAADSDGWTPLHCAAS-----------C  113 (239)
T ss_dssp             HHHTSTTSSCCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCC---------TTCCCTTCCCHHHHHHH-----------T
T ss_pred             HHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC---------CCccCCCCCCHHHHHHH-----------c
Confidence            999999999999999999999999999999999999999988         78889999999999998           4


Q ss_pred             ccHHHHHHHHHcCCCccccccCCCccHHHHH--HhcCCHHHHHHHHHhccCc
Q psy12891        167 EDQKTVKLLLEAGADVSLQTKQNHETAFHYC--AVAGNNDVLTGMLEQMSGT  216 (567)
Q Consensus       167 ~~~~~v~~Ll~~g~~~~~~~~~~~~~~l~~a--~~~~~~~~~~~Ll~~~~~~  216 (567)
                      ++.+++++|+++|++++..+...+.||+|+|  +..|+.+++++|++.+...
T Consensus       114 ~~~~~v~~Ll~~ga~~~~~~~~~~~t~l~~a~~~~~g~~~~~~~Ll~~~a~~  165 (239)
T 1ycs_B          114 NNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKM  165 (239)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHcCCCcceecCCCCcchHHHHHHhhhccHHHHHHHHHhhhcc
Confidence            5667799999999999988877766999998  7888899999999886654

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.94  E-value=6.3e-27  Score=187.48  Aligned_cols=130  Identities=24%  Similarity=0.207  Sum_probs=115.2

Q ss_pred             cCCCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCccCcCCcHHHHHHHcCcHHHHHHHHhccccccccccc-CCcHHHH
Q psy12891        415 ARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKL-GVTALHV  493 (567)
Q Consensus       415 ~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~-g~t~l~~  493 (567)
                      ...+..|.||||+|+..|+.+++++|+++|++++.++..|+||||+|+. ++.+++++|+++|++++.+|.. |+||||+
T Consensus         6 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~   84 (136)
T 1d9s_A            6 HMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMM-GSAQVAELLLLHGAEPNCADPATLTRPVHD   84 (136)
T ss_dssp             SCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCCSSCCBTTTTBCHHHH
T ss_pred             cCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCcCCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCCCCCcCCCCCCCHHHH
Confidence            3445578899999999999999999999999999999999999999999 9999999999999999999988 8999999


Q ss_pred             HHHcCCHHHHHHHHhcCCCCCCCCCCCCcccccccCCCCCCCHHHHHHHcCCHHHHHHHHhccCCc
Q psy12891        494 AAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVRLLLNSAGVQ  559 (567)
Q Consensus       494 A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~g~~  559 (567)
                      |+..|+.+++++|++++++.             +.+|..|.||||+|++.|+.+++++|+++ |+|
T Consensus        85 A~~~~~~~~v~~Ll~~ga~~-------------~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~-Gad  136 (136)
T 1d9s_A           85 AAREGFLDTLVVLHRAGARL-------------DVCDAWGRLPVDLAEEQGHRDIARYLHAA-TGD  136 (136)
T ss_dssp             HHHHTCHHHHHHHHHTCCCC-------------CCCSSSSSCHHHHHHHHTCHHHHHHHHHH-HCC
T ss_pred             HHHcCCHHHHHHHHHcCCCC-------------CccCCCCCCHHHHHHHcCCHHHHHHHHHc-CCC
Confidence            99999999999999987654             56678899999999999999999999986 775

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.94  E-value=3.5e-27  Score=193.99  Aligned_cols=135  Identities=24%  Similarity=0.222  Sum_probs=111.2

Q ss_pred             CCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCccCcCCcHHHHHHHcCcHHHHHHHHhcccccccccccCCc-HHHHHHH
Q psy12891        418 RVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLGVT-ALHVAAY  496 (567)
Q Consensus       418 ~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t-~l~~A~~  496 (567)
                      +..|.||||+|+..|+.+++++|+++|++++..+..|+||||+|+ .|+.+++++|+++|++++.+|..|+| |||+|+.
T Consensus         9 ~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~~~~d~~g~ttpL~~A~~   87 (156)
T 1bi7_B            9 MEPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRPVHDAAR   87 (156)
T ss_dssp             -CCSTTHHHHHHHHTCHHHHHHHHTTTCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCCHHHHHHH
T ss_pred             CccchHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHH
Confidence            446789999999999999999999999999999999999999985 89999999999999999999999998 9999999


Q ss_pred             cCCHHHHHHHHhcCCCCCCCCCCCCcccccccCCCCCCCHHHHHHHcCCHHHHHHHHhccCCccccccccC
Q psy12891        497 FGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVRLLLNSAGVQVDAQTQEN  567 (567)
Q Consensus       497 ~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~g~~~~~~~~~~  567 (567)
                      .|+.+++++|++++.+.             +.+|..|.||||+|++.|+.+++++|+++ |++++.++..|
T Consensus        88 ~~~~~~v~~Ll~~ga~~-------------~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~-ga~~~~~~~~g  144 (156)
T 1bi7_B           88 EGFLDTLVVLHRAGARL-------------DVRDAWGRLPVDLAEELGHRDVARYLRAA-AGGTRGSNHAR  144 (156)
T ss_dssp             HTCHHHHHHHHHHTCCS-------------SCCCTTCCCHHHHHHHHTCHHHHHHHSSC-C----------
T ss_pred             CCCHHHHHHHHHcCCCC-------------cccCCCCCCHHHHHHHhCHHHHHHHHHHc-CCCCCccCcCc
Confidence            99999999999987654             56678899999999999999999999986 99999888754

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.94  E-value=2.3e-27  Score=199.50  Aligned_cols=163  Identities=13%  Similarity=0.073  Sum_probs=137.1

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCCCCHHHHHHHcCcH----HHHHHHHHcCCCCCCccCcCCcHHHH
Q psy12891        385 GNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHA----NVVRVLVKAGASCTDENKTGFTAVHL  460 (567)
Q Consensus       385 ~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~~~~----~~v~~Ll~~g~~~~~~~~~g~t~l~~  460 (567)
                      +.++|+.|+..|+.+.++.++..+..    ...+..|.||||+|+..++.    +++++|+++|+++|.++..|+||||+
T Consensus         6 ~~~~l~~Aa~~g~~~~~~~l~~~~~~----~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~   81 (186)
T 3t8k_A            6 EYRTVSAAAMLGTYEDFLELFEKGYE----DKESVLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFP   81 (186)
T ss_dssp             HCSSHHHHHHHSCHHHHHHHHHHSSS----CHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHH
T ss_pred             cccHHHHHHHcCCHHHHHHHHhcCcc----cccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHH
Confidence            34678888888888888888876533    12223688999999998875    59999999999999999999999999


Q ss_pred             HHHcCc------HHHHHHHHhcccccccccccCC-cHHHHHHHcC-----CHHHHHHHHh-cCCCCCCCCCCCCcccccc
Q psy12891        461 AAQNGH------NQVLEEMRSSKALNVYSKKLGV-TALHVAAYFG-----QADTVRELLS-HVPGTVKSDPPTGASFLGE  527 (567)
Q Consensus       461 A~~~~~------~~~v~~Ll~~~~~~~~~~~~g~-t~l~~A~~~~-----~~~~~~~Ll~-~~~~~~~~~~~~~~~~~~~  527 (567)
                      |+..++      .+++++|+++|++++.+|..|+ ||||+|+..+     +.+++++|++ ++++.             +
T Consensus        82 a~~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~-------------~  148 (186)
T 3t8k_A           82 LFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQL-------------L  148 (186)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHTTCCSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCT-------------T
T ss_pred             HHHcCCcchhhHHHHHHHHHHCCCCCCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCC-------------c
Confidence            999886      6789999999999999999999 9999999844     4579999999 77655             6


Q ss_pred             cCCCCCCCHHHHHHHcCCHHHHHHHHhccCCccccccc
Q psy12891        528 LGSESGMTPLHLAAYSGNENVVRLLLNSAGVQVDAQTQ  565 (567)
Q Consensus       528 ~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~g~~~~~~~~  565 (567)
                      .+|..|.||||+|++.|+.++|++|++. ..+.+++++
T Consensus       149 ~~d~~G~TpL~~A~~~~~~~~v~~L~~~-~~~~~~~~~  185 (186)
T 3t8k_A          149 IKDKWGLTALEFVKRCQKPIALKMMEDY-IKKYNLKEN  185 (186)
T ss_dssp             CCCTTSCCHHHHHHTTTCHHHHHHHHHH-HHHHTCCC-
T ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHHHH-HHHHhcccC
Confidence            7889999999999999999999999984 667776654

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.93  E-value=1.8e-25  Score=177.11  Aligned_cols=126  Identities=41%  Similarity=0.569  Sum_probs=116.5

Q ss_pred             CCCCHHHHHHHcCcHHHHHHHHHcCCCCCCccCcCCcHHHHHHHcCcHHHHHHHHhcccccccccccCCcHHHHHHHcCC
Q psy12891        420 TEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLGVTALHVAAYFGQ  499 (567)
Q Consensus       420 ~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~  499 (567)
                      .|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..++.+++++|++.|++++.+|..|.||||+|+..++
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~   80 (126)
T 1n0r_A            1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGH   80 (126)
T ss_dssp             CCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred             CCccHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCh
Confidence            37899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCCCCCCCCCCCcccccccCCCCCCCHHHHHHHcCCHHHHHHHHhccCCc
Q psy12891        500 ADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVRLLLNSAGVQ  559 (567)
Q Consensus       500 ~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~g~~  559 (567)
                      .+++++|++++.+.             +..|..|.|||++|+..|+.+++++|+++ |+|
T Consensus        81 ~~~~~~Ll~~g~~~-------------~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~-Gad  126 (126)
T 1n0r_A           81 LEVVKLLLEAGADV-------------NAKDKNGRTPLHLAARNGHLEVVKLLLEA-GAY  126 (126)
T ss_dssp             HHHHHHHHHTTCCT-------------TCCCTTSCCHHHHHHHTTCHHHHHHHHHH-TCC
T ss_pred             HHHHHHHHHcCCCC-------------cccCCCCCCHHHHHHHcCcHHHHHHHHHc-CCC
Confidence            99999999987654             55678899999999999999999999996 876

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.93  E-value=1.2e-25  Score=179.96  Aligned_cols=133  Identities=21%  Similarity=0.278  Sum_probs=119.6

Q ss_pred             CCCCCCCCCCCChHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCChhHHHHhcCchhHHHHHHHhhhhhhhhHHhhhhc
Q psy12891         60 GAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVVDLLIQFVQNISQEKVLEYVN  139 (567)
Q Consensus        60 g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~~~~~~~~~~~~~~~  139 (567)
                      +++++..+..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+. |+.+++++|+++|++         ++
T Consensus         2 ~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~---------~~   71 (136)
T 1d9s_A            2 SPGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMM-GSAQVAELLLLHGAE---------PN   71 (136)
T ss_dssp             CCCCSCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCC---------SS
T ss_pred             CCCccCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCcCCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCC---------CC
Confidence            67899999999999999999999999999999999999999999999999999 999999999999987         67


Q ss_pred             ccccc-cccHHHHHHHhCCcccccccccccHHHHHHHHHcCCCccccccCCCccHHHHHHhcCCHHHHHHHHHhcc
Q psy12891        140 SVNED-GASALHYACQVTKAELIPITSKEDQKTVKLLLEAGADVSLQTKQNHETAFHYCAVAGNNDVLTGMLEQMS  214 (567)
Q Consensus       140 ~~~~~-~~t~L~~a~~~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~  214 (567)
                      .++.. |.||||+|+..           ++.+++++|+++|++++..+. .|.|||++|+..++.+++++|+++++
T Consensus        72 ~~~~~~g~t~L~~A~~~-----------~~~~~v~~Ll~~ga~~~~~d~-~g~tpl~~A~~~~~~~~~~~Ll~~Ga  135 (136)
T 1d9s_A           72 CADPATLTRPVHDAARE-----------GFLDTLVVLHRAGARLDVCDA-WGRLPVDLAEEQGHRDIARYLHAATG  135 (136)
T ss_dssp             CCBTTTTBCHHHHHHHH-----------TCHHHHHHHHHTCCCCCCCSS-SSSCHHHHHHHHTCHHHHHHHHHHHC
T ss_pred             CcCCCCCCCHHHHHHHc-----------CCHHHHHHHHHcCCCCCccCC-CCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence            88888 99999999984           456779999999999887665 45888888888888888888888754

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.93  E-value=1.3e-25  Score=179.76  Aligned_cols=124  Identities=27%  Similarity=0.404  Sum_probs=114.6

Q ss_pred             CCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCccCcCCcHHHHHHHcCcHHHHHHHHhcccccccccccCCcHHHHHHHcC
Q psy12891        419 VTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLGVTALHVAAYFG  498 (567)
Q Consensus       419 ~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~  498 (567)
                      ..+.||||+|+..|+.+++++|+++|++++..|..|+||||+|+..++.+++++|+++|++++.+|..|.||||+|+..+
T Consensus        12 ~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~   91 (136)
T 2jab_A           12 SDLGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFIG   91 (136)
T ss_dssp             CHHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHT
T ss_pred             ccccHHHHHHHHhCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcC
Confidence            35679999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHhcCCCCCCCCCCCCcccccccCCCCCCCHHHHHHHcCCHHHHHHHHhc
Q psy12891        499 QADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVRLLLNS  555 (567)
Q Consensus       499 ~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~  555 (567)
                      +.+++++|++++.+.             +..|..|.|||++|++.|+.+++++|+++
T Consensus        92 ~~~~v~~Ll~~g~~~-------------~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~  135 (136)
T 2jab_A           92 HLEIAEVLLKHGADV-------------NAQDKFGKTAFDISIGNGNEDLAEILQKL  135 (136)
T ss_dssp             CHHHHHHHHHTTCCT-------------TCCCTTSCCHHHHHHHTTCHHHHHHHHHC
T ss_pred             CHHHHHHHHHcCCCC-------------cCcCCCCCCHHHHHHHCCCHHHHHHHHHc
Confidence            999999999987654             55688899999999999999999999985

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.93  E-value=7.5e-26  Score=190.28  Aligned_cols=160  Identities=14%  Similarity=0.095  Sum_probs=133.2

Q ss_pred             CCCChhhHHhhcCChhHHHHHHhhcCCCCChhhhHhhhcCchHHHHHHHhcCCCCCCCC-CCCChHHHHHHHhCCH----
Q psy12891          9 LRETPLHIAARVKDGDRCALMLLKSGAGPNLTNIAARVKDGDRCALMLLKSGAGPNLTT-DDGQTPVHAAAKYGNL----   83 (567)
Q Consensus         9 ~~~t~L~~A~~~g~~~~v~~~L~~~g~~~~~~~~~a~~~~~~~~~~~Ll~~g~~~~~~~-~~g~t~L~~A~~~g~~----   83 (567)
                      .+.++|+.||+.|+.+.+..                           ++..|  ++.++ ..|+||||+|+..|+.    
T Consensus         5 ~~~~~l~~Aa~~g~~~~~~~---------------------------l~~~~--~~~~~~~~g~T~Lh~A~~~~~~~~~~   55 (186)
T 3t8k_A            5 SEYRTVSAAAMLGTYEDFLE---------------------------LFEKG--YEDKESVLKSNILYDVLRNNNDEARY   55 (186)
T ss_dssp             HHCSSHHHHHHHSCHHHHHH---------------------------HHHHS--SSCHHHHHTTTHHHHHTTCSCHHHHH
T ss_pred             ccccHHHHHHHcCCHHHHHH---------------------------HHhcC--cccccccCCCCHHHHHHHcCCcchHH
Confidence            35789999999999886554                           34444  34444 6799999999999975    


Q ss_pred             HHHHHHHHcCCCCCCCCCCCCChhHHHHhcCc------hhHHHHHHHhhhhhhhhHHhhhhcccccccc-cHHHHHHHhC
Q psy12891         84 VTLQLLLEDGGDPMYKNKIGETPLHLASRNCK------AEVVDLLIQFVQNISQEKVLEYVNSVNEDGA-SALHYACQVT  156 (567)
Q Consensus        84 ~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~~~------~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~-t~L~~a~~~~  156 (567)
                      +++++|+++|++++.+|..|+||||+|+..++      .+++++|+++|++         ++.+|..|. ||||+|+..+
T Consensus        56 ~iv~~Ll~~Gadvn~~d~~g~TpLh~a~~~~~~~~~~~~~iv~~Ll~~Gad---------in~~d~~g~ttpLh~A~~~~  126 (186)
T 3t8k_A           56 KISMFLINKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGAD---------ITALYKPYKIVVFKNIFNYF  126 (186)
T ss_dssp             HHHHHHHHTTCCSSCCCTTCCCTHHHHHHHCTTCHHHHHHHHHHHHHTTCC---------SSSCBGGGTBCTTGGGGGCC
T ss_pred             HHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCcchhhHHHHHHHHHHCCCC---------CCccCCCcCchHHHHHHHcC
Confidence            59999999999999999999999999999987      5789999999998         788999999 9999999844


Q ss_pred             CcccccccccccHHHHHHHHH-cCCCccccccCCCccHHHHHHhcCCHHHHHHHHHhc
Q psy12891        157 KAELIPITSKEDQKTVKLLLE-AGADVSLQTKQNHETAFHYCAVAGNNDVLTGMLEQM  213 (567)
Q Consensus       157 ~~~~~~~~~~~~~~~v~~Ll~-~g~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~  213 (567)
                      ..+      .+..+++++|++ +|++++..+.. |.||||+|+..|+.+++++|.+..
T Consensus       127 ~~~------~~~~~iv~~Ll~~~gad~~~~d~~-G~TpL~~A~~~~~~~~v~~L~~~~  177 (186)
T 3t8k_A          127 VDE------NEMIPLYKLIFSQSGLQLLIKDKW-GLTALEFVKRCQKPIALKMMEDYI  177 (186)
T ss_dssp             SCH------HHHHHHHHHHHTSTTCCTTCCCTT-SCCHHHHHHTTTCHHHHHHHHHHH
T ss_pred             CCh------hhHHHHHHHHHHhcCCCCcccCCC-CCCHHHHHHHcCCHHHHHHHHHHH
Confidence            322      345678999999 99999877665 489999999999999999888764

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.92  E-value=3e-25  Score=177.68  Aligned_cols=128  Identities=27%  Similarity=0.390  Sum_probs=114.4

Q ss_pred             ccCCCCCChhhHHhhcCChhHHHHHHhhcCCCCChhhhHhhhcCchHHHHHHHhcCCCCCCCCCCCChHHHHHHHhCCHH
Q psy12891          5 NSGKLRETPLHIAARVKDGDRCALMLLKSGAGPNLTNIAARVKDGDRCALMLLKSGAGPNLTTDDGQTPVHAAAKYGNLV   84 (567)
Q Consensus         5 ~~~~~~~t~L~~A~~~g~~~~v~~~L~~~g~~~~~~~~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~   84 (567)
                      .....+.||||+||..|+.+.+.                           +|+++|++++.++..|+||||+|+..|+.+
T Consensus         9 ~~~~~~~t~l~~A~~~g~~~~v~---------------------------~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~   61 (136)
T 2jab_A            9 HHGSDLGKKLLEAARAGQDDEVR---------------------------ILMANGADVNAKDEYGLTPLYLATAHGHLE   61 (136)
T ss_dssp             ---CHHHHHHHHHHHHTCHHHHH---------------------------HHHHTTCCTTCCCTTSCCHHHHHHHHTCHH
T ss_pred             cccccccHHHHHHHHhCCHHHHH---------------------------HHHHcCCCCCCcCCCCCCHHHHHHHcCCHH
Confidence            46678899999999999988443                           578889999999999999999999999999


Q ss_pred             HHHHHHHcCCCCCCCCCCCCChhHHHHhcCchhHHHHHHHhhhhhhhhHHhhhhcccccccccHHHHHHHhCCccccccc
Q psy12891         85 TLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVVDLLIQFVQNISQEKVLEYVNSVNEDGASALHYACQVTKAELIPIT  164 (567)
Q Consensus        85 ~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~  164 (567)
                      ++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++         ++.++..|.|||++|+.          
T Consensus        62 ~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g~~---------~~~~~~~g~tpl~~A~~----------  122 (136)
T 2jab_A           62 IVEVLLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGAD---------VNAQDKFGKTAFDISIG----------  122 (136)
T ss_dssp             HHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC---------TTCCCTTSCCHHHHHHH----------
T ss_pred             HHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC---------CcCcCCCCCCHHHHHHH----------
Confidence            99999999999999999999999999999999999999999988         67889999999999998          


Q ss_pred             ccccHHHHHHHHHcC
Q psy12891        165 SKEDQKTVKLLLEAG  179 (567)
Q Consensus       165 ~~~~~~~v~~Ll~~g  179 (567)
                       .++.+++++|+++|
T Consensus       123 -~~~~~~~~~Ll~~G  136 (136)
T 2jab_A          123 -NGNEDLAEILQKLN  136 (136)
T ss_dssp             -TTCHHHHHHHHHC-
T ss_pred             -CCCHHHHHHHHHcC
Confidence             45667799999876

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.92  E-value=2.7e-25  Score=182.64  Aligned_cols=143  Identities=25%  Similarity=0.283  Sum_probs=96.1

Q ss_pred             hhhcCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCcCCCCHHHHHHHcCCHHHHHHHHHhCCCCccccCCCCCcHHHHHH
Q psy12891        314 LTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAA  393 (567)
Q Consensus       314 ~~~~~~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~  393 (567)
                      .+..+.|||++|+..|+.+++++|+++|++++..+..|.||||+|+ .++.+++++|++.+.+ ++.             
T Consensus         8 ~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~-~~~-------------   72 (156)
T 1bi7_B            8 SMEPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAE-PNC-------------   72 (156)
T ss_dssp             --CCSTTHHHHHHHHTCHHHHHHHHTTTCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCC-CCC-------------
T ss_pred             CCccchHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCC-CCC-------------
Confidence            3455677777777777777777777777777777777777777664 6666666666665543 222             


Q ss_pred             HcCCHHHHHHHHhcCCCcccccCCCCCCCC-HHHHHHHcCcHHHHHHHHHcCCCCCCccCcCCcHHHHHHHcCcHHHHHH
Q psy12891        394 MQGSVGVIEELMKFDRSGVISARNRVTEAT-PLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEE  472 (567)
Q Consensus       394 ~~~~~~~~~~ll~~~~~~~~~~~~~~~~~t-~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~  472 (567)
                                             .+..|.| |||+|+..|+.+++++|+++|++++.++..|+||||+|+..|+.+++++
T Consensus        73 -----------------------~d~~g~ttpL~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~  129 (156)
T 1bi7_B           73 -----------------------ADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARY  129 (156)
T ss_dssp             -----------------------CCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTCCCHHHHHHHHTCHHHHHH
T ss_pred             -----------------------cCCCCCcHHHHHHHHCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHhCHHHHHHH
Confidence                                   2235566 8888888888899999999999999999999999999999999999999


Q ss_pred             HHhcccccccccccCCcHHHHH
Q psy12891        473 MRSSKALNVYSKKLGVTALHVA  494 (567)
Q Consensus       473 Ll~~~~~~~~~~~~g~t~l~~A  494 (567)
                      |+++|++++.++..|.||.+.+
T Consensus       130 Ll~~ga~~~~~~~~g~t~~~~~  151 (156)
T 1bi7_B          130 LRAAAGGTRGSNHARIDAAEGP  151 (156)
T ss_dssp             HSSCC-----------------
T ss_pred             HHHcCCCCCccCcCcCcccccC
Confidence            9999999999888888887644

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.92  E-value=1.9e-24  Score=171.18  Aligned_cols=126  Identities=45%  Similarity=0.646  Sum_probs=115.4

Q ss_pred             CCCChhhHHhhcCChhHHHHHHhhcCCCCChhhhHhhhcCchHHHHHHHhcCCCCCCCCCCCChHHHHHHHhCCHHHHHH
Q psy12891          9 LRETPLHIAARVKDGDRCALMLLKSGAGPNLTNIAARVKDGDRCALMLLKSGAGPNLTTDDGQTPVHAAAKYGNLVTLQL   88 (567)
Q Consensus         9 ~~~t~L~~A~~~g~~~~v~~~L~~~g~~~~~~~~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~   88 (567)
                      .|+||||+|+..|+.+.+.                           +|+++|++++..+..|.||||+|+..|+.+++++
T Consensus         1 ~g~t~L~~A~~~~~~~~v~---------------------------~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~   53 (126)
T 1n0r_A            1 NGRTPLHLAARNGHLEVVK---------------------------LLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKL   53 (126)
T ss_dssp             CCCCHHHHHHHHTCHHHHH---------------------------HHHHHTCCTTCCCTTSCCHHHHHHHHTCHHHHHH
T ss_pred             CCccHHHHHHHcCcHHHHH---------------------------HHHHcCCCCCCcCCCCCcHHHHHHHcCcHHHHHH
Confidence            4899999999999977443                           5778888999999999999999999999999999


Q ss_pred             HHHcCCCCCCCCCCCCChhHHHHhcCchhHHHHHHHhhhhhhhhHHhhhhcccccccccHHHHHHHhCCccccccccccc
Q psy12891         89 LLEDGGDPMYKNKIGETPLHLASRNCKAEVVDLLIQFVQNISQEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKED  168 (567)
Q Consensus        89 Ll~~ga~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~  168 (567)
                      |+++|++++.++..|.||||+|+..++.+++++|+++|++         ++.++..|.|||++|+.           .++
T Consensus        54 Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~---------~~~~~~~g~t~l~~A~~-----------~~~  113 (126)
T 1n0r_A           54 LLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD---------VNAKDKNGRTPLHLAAR-----------NGH  113 (126)
T ss_dssp             HHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC---------TTCCCTTSCCHHHHHHH-----------TTC
T ss_pred             HHHcCCCCcccCCCCCcHHHHHHHcChHHHHHHHHHcCCC---------CcccCCCCCCHHHHHHH-----------cCc
Confidence            9999999999999999999999999999999999999887         67889999999999998           456


Q ss_pred             HHHHHHHHHcCCC
Q psy12891        169 QKTVKLLLEAGAD  181 (567)
Q Consensus       169 ~~~v~~Ll~~g~~  181 (567)
                      .+++++|+++|++
T Consensus       114 ~~~~~~Ll~~Gad  126 (126)
T 1n0r_A          114 LEVVKLLLEAGAY  126 (126)
T ss_dssp             HHHHHHHHHHTCC
T ss_pred             HHHHHHHHHcCCC
Confidence            7779999999985

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.91  E-value=1.5e-24  Score=174.09  Aligned_cols=127  Identities=24%  Similarity=0.268  Sum_probs=112.3

Q ss_pred             CCCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCccCcCCcHHHHHHHcCcHHHHHHHHhcccccccccccCCcHHHHHH
Q psy12891        416 RNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLGVTALHVAA  495 (567)
Q Consensus       416 ~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~  495 (567)
                      ..+..|.||||+|+..|+.+++++|+++|++++..+..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+
T Consensus         5 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~   84 (137)
T 3c5r_A            5 FTNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQNDSPLHDAA   84 (137)
T ss_dssp             CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCGGGCCHHHHHH
T ss_pred             CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCcccCcCCCCCCHHHHHH
Confidence            34557889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHhcCCCCCCCCCCCCcccccccCCCCCCCHHHHHHHcCCHHHHHHHHhc
Q psy12891        496 YFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVRLLLNS  555 (567)
Q Consensus       496 ~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~  555 (567)
                      ..++.+++++|++++++.             +.+|..|.|||++|+..++.+++++|.++
T Consensus        85 ~~~~~~~v~~Ll~~ga~~-------------~~~~~~g~tpl~~A~~~~~~~~l~~l~~~  131 (137)
T 3c5r_A           85 KNGHVDIVKLLLSYGASR-------------NAVNIFGLRPVDYTDDESMKSLLLLPEKN  131 (137)
T ss_dssp             HTTCHHHHHHHHHTTCCT-------------TCCCTTSCCGGGGCCCHHHHHHHSCC---
T ss_pred             HcCCHHHHHHHHHcCCCC-------------CCCCCCCCCHHHHHhhccHHHHHhhcccc
Confidence            999999999999987654             56788999999999999999999888775

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.90  E-value=4.1e-24  Score=180.75  Aligned_cols=140  Identities=26%  Similarity=0.345  Sum_probs=123.0

Q ss_pred             CCCCCChhhHHhhcCChhHHHHHHhhcCCCCChhhhHhhhcCchHHHHHHHhcCCCCCCCCCCCChHHHHHHHhCCHHHH
Q psy12891          7 GKLRETPLHIAARVKDGDRCALMLLKSGAGPNLTNIAARVKDGDRCALMLLKSGAGPNLTTDDGQTPVHAAAKYGNLVTL   86 (567)
Q Consensus         7 ~~~~~t~L~~A~~~g~~~~v~~~L~~~g~~~~~~~~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v   86 (567)
                      +..|+||||+||..|+.+.+.                           .|++ |+++|.++..|+||||+|+..|+.+++
T Consensus        41 ~~~g~t~L~~A~~~g~~~~v~---------------------------~Ll~-~~~~~~~d~~g~t~L~~A~~~~~~~~v   92 (183)
T 3deo_A           41 VSEYETPWWTAARKADEQALS---------------------------QLLE-DRDVDAVDENGRTALLFVAGLGSDKCV   92 (183)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHH---------------------------HHTT-TSCTTCCCTTSCCHHHHHHHHTCHHHH
T ss_pred             CCCCCCHHHHHHHcCCHHHHH---------------------------HHHh-cCCCCCcCCCCCCHHHHHHHcCCHHHH
Confidence            457889999999999987444                           4666 888999999999999999999999999


Q ss_pred             HHHHHcCCCCCCCC-CCCCChhHHHHhcCchhHHHHHHHhhhhhhhhHHhhhhcccccccccHHHHHHHhCCcccccccc
Q psy12891         87 QLLLEDGGDPMYKN-KIGETPLHLASRNCKAEVVDLLIQFVQNISQEKVLEYVNSVNEDGASALHYACQVTKAELIPITS  165 (567)
Q Consensus        87 ~~Ll~~ga~~~~~~-~~g~t~L~~A~~~~~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~  165 (567)
                      ++|+++|++++.++ ..|+||||+|+..|+.+++++|+++|++         ++.++..|.|||++|+..++.       
T Consensus        93 ~~Ll~~ga~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~---------~~~~d~~g~tpl~~A~~~~~~-------  156 (183)
T 3deo_A           93 RLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGAD---------IEVEDERGLTALELAREILKT-------  156 (183)
T ss_dssp             HHHHHTTCCTTCCCSSSSCCHHHHHHHTTCHHHHHHHHHHTCC---------TTCCCTTSCCHHHHHHHHHHT-------
T ss_pred             HHHHHcCCCCCcCCCCCCCCHHHHHHhcCcHHHHHHHHHcCCC---------CcCCCCCCCCHHHHHHHhccC-------
Confidence            99999999999888 8899999999999999999999999988         688899999999999874322       


Q ss_pred             cccHHHHHHHHHcCCCccccccCCCccHHHHHHhcCCHHHHHHHHHh
Q psy12891        166 KEDQKTVKLLLEAGADVSLQTKQNHETAFHYCAVAGNNDVLTGMLEQ  212 (567)
Q Consensus       166 ~~~~~~v~~Ll~~g~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~  212 (567)
                                            ....+++++|+..|..+++++|.++
T Consensus       157 ----------------------~~~~~~l~~a~~~~~~~i~~~L~~~  181 (183)
T 3deo_A          157 ----------------------TPKGNPMQFGRRIGLEKVINVLEGQ  181 (183)
T ss_dssp             ----------------------CCCCSHHHHHHHHHHHHHHHHHHTC
T ss_pred             ----------------------cccccHHHHHHHcCHHHHHHHHHHh
Confidence                                  1237899999999999999998764

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.90  E-value=4.6e-24  Score=187.01  Aligned_cols=134  Identities=25%  Similarity=0.296  Sum_probs=107.8

Q ss_pred             CCCCHHHHHHHcCcHHHHHHHHHcCCCCCCccCcCCcHHHHHHHcCcHHHHHHHHhc-ccccccccccCCcHHHHHHHcC
Q psy12891        420 TEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSS-KALNVYSKKLGVTALHVAAYFG  498 (567)
Q Consensus       420 ~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~-~~~~~~~~~~g~t~l~~A~~~~  498 (567)
                      .|.||||+|+..|+.+++++|++.|++++..+..|+||||+|+..|+.+++++|++. |++++.+|..|+||||+|+..|
T Consensus        72 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~d~~g~tpL~~A~~~~  151 (222)
T 3ehr_A           72 SIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAAWKG  151 (222)
T ss_dssp             EESCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCCCCCTTSCCHHHHHHHHT
T ss_pred             ccccccccccccCcHHHHHHHHhCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCccccCCCCCCHHHHHHHcC
Confidence            567999999999999999999999999999999999999999999999999999998 9999999999999999999999


Q ss_pred             CHHHHHHHHhcCCCCCCCCCCCCcccccccCCCCCCCHHHHHHHcCCHHHHHHHHhccCCccccccccC
Q psy12891        499 QADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVRLLLNSAGVQVDAQTQEN  567 (567)
Q Consensus       499 ~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~g~~~~~~~~~~  567 (567)
                      +.+++++|++++++.             +.+|..|.|||++|+..|+.++++.|+++ |++++.++.+|
T Consensus       152 ~~~~v~~Ll~~ga~~-------------~~~~~~g~t~l~~A~~~~~~~~l~~l~~~-~~~~~~~~~~~  206 (222)
T 3ehr_A          152 YADIVQLLLAKGART-------------DLRNIEKKLAFDMATNAACASLLKKKQGT-DAVRTLSNAED  206 (222)
T ss_dssp             CHHHHHHHHHHTCCS-------------CCCCTTSCCHHHHCCSHHHHHHHC-----------------
T ss_pred             CHHHHHHHHHcCCCC-------------ccccCCCCCHHHHhcchhHHHHHHHHhcc-chhhhccchhh
Confidence            999999999987764             56788899999999999999999999986 99998888764

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.90  E-value=4.2e-24  Score=171.43  Aligned_cols=132  Identities=30%  Similarity=0.384  Sum_probs=113.7

Q ss_pred             CCCCCCCCCCCChHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCChhHHHHhcCchhHHHHHHHhhhhhhhhHHhhhhc
Q psy12891         60 GAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVVDLLIQFVQNISQEKVLEYVN  139 (567)
Q Consensus        60 g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~~~~~~~~~~~~~~~  139 (567)
                      |+|+ .++.+|+||||+|+..|+.+++++|++.|++++.+|..|.||||+|+..|+.+++++|+++|++         ++
T Consensus         1 G~d~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~---------~~   70 (137)
T 3c5r_A            1 GIDP-FTNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKAL---------VN   70 (137)
T ss_dssp             ---C-CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC---------TT
T ss_pred             CCCC-CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCc---------cc
Confidence            6788 7889999999999999999999999999999999999999999999999999999999999887         67


Q ss_pred             ccccccccHHHHHHHhCCcccccccccccHHHHHHHHHcCCCccccccCCCccHHHHHHhcCCHHHHHHHHHhc
Q psy12891        140 SVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGADVSLQTKQNHETAFHYCAVAGNNDVLTGMLEQM  213 (567)
Q Consensus       140 ~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~  213 (567)
                      .++..|.||||+|+..           ++.+++++|+++|++++..+.. |.||+++|+..+..++++++.+..
T Consensus        71 ~~~~~g~t~L~~A~~~-----------~~~~~v~~Ll~~ga~~~~~~~~-g~tpl~~A~~~~~~~~l~~l~~~~  132 (137)
T 3c5r_A           71 TTGYQNDSPLHDAAKN-----------GHVDIVKLLLSYGASRNAVNIF-GLRPVDYTDDESMKSLLLLPEKNE  132 (137)
T ss_dssp             CCCGGGCCHHHHHHHT-----------TCHHHHHHHHHTTCCTTCCCTT-SCCGGGGCCCHHHHHHHSCC----
T ss_pred             CcCCCCCCHHHHHHHc-----------CCHHHHHHHHHcCCCCCCCCCC-CCCHHHHHhhccHHHHHhhccccc
Confidence            8899999999999984           5667799999999999876554 589999998888888877766543

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.90  E-value=1.3e-23  Score=186.34  Aligned_cols=140  Identities=26%  Similarity=0.349  Sum_probs=119.2

Q ss_pred             CCCCChhhHHhhcCChhHHHHHHhhcCCCCChhhhHhhhcCchHHHHHHHhcCCCCCCCCCCCChHHHHHHHhCCHHHHH
Q psy12891          8 KLRETPLHIAARVKDGDRCALMLLKSGAGPNLTNIAARVKDGDRCALMLLKSGAGPNLTTDDGQTPVHAAAKYGNLVTLQ   87 (567)
Q Consensus         8 ~~~~t~L~~A~~~g~~~~v~~~L~~~g~~~~~~~~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~   87 (567)
                      ..|+||||+||+.|+.+.|                           +.|++ |+++|.++..|+||||+|+..|+.++|+
T Consensus        43 ~~g~t~L~~A~~~g~~~~v---------------------------~~Ll~-~~~~~~~d~~g~t~L~~A~~~g~~~~v~   94 (244)
T 3ui2_A           43 SEYETPWWTAARKADEQAL---------------------------SQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVR   94 (244)
T ss_dssp             HHHHHHHHHHHTTTCHHHH---------------------------HHTTT-TCCTTCBCTTSCBHHHHHHHHTCHHHHH
T ss_pred             cCCCCHHHHHHHcCCHHHH---------------------------HHHHc-CCCCCCcCCCCCCHHHHHHHCCCHHHHH
Confidence            3577888888888877643                           34667 8888999999999999999999999999


Q ss_pred             HHHHcCCCCCCCC-CCCCChhHHHHhcCchhHHHHHHHhhhhhhhhHHhhhhcccccccccHHHHHHHhCCccccccccc
Q psy12891         88 LLLEDGGDPMYKN-KIGETPLHLASRNCKAEVVDLLIQFVQNISQEKVLEYVNSVNEDGASALHYACQVTKAELIPITSK  166 (567)
Q Consensus        88 ~Ll~~ga~~~~~~-~~g~t~L~~A~~~~~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~  166 (567)
                      +|+++|++++.++ ..|.||||+|+..|+.+++++|+++|++         ++.++..|.||||+|+..+..        
T Consensus        95 ~Ll~~ga~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~---------~~~~d~~g~t~l~~A~~~~~~--------  157 (244)
T 3ui2_A           95 LLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGAD---------IEVEDERGLTALELAREILKT--------  157 (244)
T ss_dssp             HHHHTTCCTTCCCSSSCCCHHHHHHHTTCHHHHHHHHHTTCC---------TTCCCTTCCCHHHHHHHHHTT--------
T ss_pred             HHHHcCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC---------CCCCCCCCCcHHHHHHHHHhc--------
Confidence            9999999999888 7899999999999999999999999988         688899999999999863211        


Q ss_pred             ccHHHHHHHHHcCCCccccccCCCccHHHHHHhcCCHHHHHHHHHhc
Q psy12891        167 EDQKTVKLLLEAGADVSLQTKQNHETAFHYCAVAGNNDVLTGMLEQM  213 (567)
Q Consensus       167 ~~~~~v~~Ll~~g~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~  213 (567)
                                           ..+.+||++|+..|+.+++++|++..
T Consensus       158 ---------------------~~~~~~l~~a~~~g~~~iv~~L~~~~  183 (244)
T 3ui2_A          158 ---------------------TPKGNPMQFGRRIGLEKVINVLEGQV  183 (244)
T ss_dssp             ---------------------CCCSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ---------------------cCCCCHHHHHHHcChHHHHHHHHHhc
Confidence                                 23488999999999999999998864

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.89  E-value=7.8e-24  Score=166.18  Aligned_cols=113  Identities=27%  Similarity=0.299  Sum_probs=102.0

Q ss_pred             cCCCCCChhhHHhhcCChhHHHHHHhhcCCCCChhhhHhhhcCchHHHHHHHhcCCCCCCCCCCCChHHHHHHHhCCHHH
Q psy12891          6 SGKLRETPLHIAARVKDGDRCALMLLKSGAGPNLTNIAARVKDGDRCALMLLKSGAGPNLTTDDGQTPVHAAAKYGNLVT   85 (567)
Q Consensus         6 ~~~~~~t~L~~A~~~g~~~~v~~~L~~~g~~~~~~~~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~   85 (567)
                      .++.|.||||+|+..|+.+.+.                           +|++.|++++.++..|+||||+|+..|+.++
T Consensus         3 ~~~~~~~~l~~A~~~~~~~~v~---------------------------~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~   55 (123)
T 3aaa_C            3 LGSMCDKEFMWALKNGDLDEVK---------------------------DYVAKGEDVNRTLEGGRKPLHYAADCGQLEI   55 (123)
T ss_dssp             ----CHHHHHHHHHTTCHHHHH---------------------------HHHHTTCCTTSCCTTSSCHHHHHHHTTCHHH
T ss_pred             cccccchHHHHHHHcCCHHHHH---------------------------HHHHcCCCcCccCCCCCcHHHHHHHcCCHHH
Confidence            4678999999999999988444                           4788899999999999999999999999999


Q ss_pred             HHHHHHcCCCCCCCCCCCCChhHHHHhcCchhHHHHHHHhhhhhhhhHHhhhhcccccccccHHHHHHH
Q psy12891         86 LQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVVDLLIQFVQNISQEKVLEYVNSVNEDGASALHYACQ  154 (567)
Q Consensus        86 v~~Ll~~ga~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~  154 (567)
                      +++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++         ++.++..|.|||++|..
T Consensus        56 v~~Ll~~g~~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~---------~~~~~~~g~t~l~~A~~  115 (123)
T 3aaa_C           56 LEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGAD---------KTVKGPDGLTAFEATDN  115 (123)
T ss_dssp             HHHHHTTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC---------TTCCCTTSCCHHHHCCC
T ss_pred             HHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC---------CCCcCCCCCCHHHHhCC
Confidence            9999999999999999999999999999999999999999988         68889999999999954

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.89  E-value=3.1e-23  Score=175.34  Aligned_cols=139  Identities=25%  Similarity=0.287  Sum_probs=117.0

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcc-CcCCcHHHHH
Q psy12891        383 KDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDEN-KTGFTAVHLA  461 (567)
Q Consensus       383 ~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~-~~g~t~l~~A  461 (567)
                      ..|.||||.|+..|+.+++++|++ +.+   .+..+..|.||||+|+..|+.+++++|+++|++++..+ ..|+||||+|
T Consensus        42 ~~g~t~L~~A~~~g~~~~v~~Ll~-~~~---~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A  117 (183)
T 3deo_A           42 SEYETPWWTAARKADEQALSQLLE-DRD---VDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMA  117 (183)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHTT-TSC---TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSSCCHHHHH
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHh-cCC---CCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHH
Confidence            356678888888888888888887 433   33445578899999999999999999999999999888 8899999999


Q ss_pred             HHcCcHHHHHHHHhcccccccccccCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcccccccCCCCCCCHHHHHH
Q psy12891        462 AQNGHNQVLEEMRSSKALNVYSKKLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAA  541 (567)
Q Consensus       462 ~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~  541 (567)
                      +..|+.+++++|+++|++++.+|..|+||||+|+..++.                              ..+.++|++|+
T Consensus       118 ~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~------------------------------~~~~~~l~~a~  167 (183)
T 3deo_A          118 AGYVRPEVVEALVELGADIEVEDERGLTALELAREILKT------------------------------TPKGNPMQFGR  167 (183)
T ss_dssp             HHTTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHHHT------------------------------CCCCSHHHHHH
T ss_pred             HhcCcHHHHHHHHHcCCCCcCCCCCCCCHHHHHHHhccC------------------------------cccccHHHHHH
Confidence            999999999999999999999999999999999864322                              23568999999


Q ss_pred             HcCCHHHHHHHHhc
Q psy12891        542 YSGNENVVRLLLNS  555 (567)
Q Consensus       542 ~~~~~~~v~~Ll~~  555 (567)
                      +.|+.+++++|.++
T Consensus       168 ~~~~~~i~~~L~~~  181 (183)
T 3deo_A          168 RIGLEKVINVLEGQ  181 (183)
T ss_dssp             HHHHHHHHHHHHTC
T ss_pred             HcCHHHHHHHHHHh
Confidence            99999999999875

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.89  E-value=1.9e-23  Score=163.98  Aligned_cols=112  Identities=22%  Similarity=0.240  Sum_probs=95.8

Q ss_pred             CCCCHHHHHHHcCcHHHHHHHHHcCCCCCCccCcCCcHHHHHHHcCcHHHHHHHHhcccccccccccCCcHHHHHHHcCC
Q psy12891        420 TEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLGVTALHVAAYFGQ  499 (567)
Q Consensus       420 ~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~  499 (567)
                      .|.||||+|+..|+.+++++|++.|++++..+..|+||||+|+..++.+++++|+++|++++.+|..|+||||+|+..++
T Consensus         6 ~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A~~~~~   85 (123)
T 3aaa_C            6 MCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGH   85 (123)
T ss_dssp             -CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHHTC
T ss_pred             ccchHHHHHHHcCCHHHHHHHHHcCCCcCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCC
Confidence            56689999999999999999999999998888889999999999999999999999999888888889999999999999


Q ss_pred             HHHHHHHHhcCCCCCCCCCCCCcccccccCCCCCCCHHHHHHHcC
Q psy12891        500 ADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSG  544 (567)
Q Consensus       500 ~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~  544 (567)
                      .+++++|++++++.             +.+|..|.|||++|...+
T Consensus        86 ~~~v~~Ll~~ga~~-------------~~~~~~g~t~l~~A~~~~  117 (123)
T 3aaa_C           86 VSCVKLLLSKGADK-------------TVKGPDGLTAFEATDNQA  117 (123)
T ss_dssp             HHHHHHHHHTTCCT-------------TCCCTTSCCHHHHCCCHH
T ss_pred             HHHHHHHHHcCCCC-------------CCcCCCCCCHHHHhCCHH
Confidence            99999999887654             556788899999884433

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.89  E-value=2.3e-23  Score=184.68  Aligned_cols=138  Identities=25%  Similarity=0.291  Sum_probs=113.1

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcc-CcCCcHHHHHH
Q psy12891        384 DGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDEN-KTGFTAVHLAA  462 (567)
Q Consensus       384 ~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~-~~g~t~l~~A~  462 (567)
                      .|.||||.|+..|+.+++++|++ +.+   .+..+..|.||||+|+..|+.+++++|+++|++++..+ ..|+||||+|+
T Consensus        44 ~g~t~L~~A~~~g~~~~v~~Ll~-~~~---~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~t~L~~A~  119 (244)
T 3ui2_A           44 EYETPWWTAARKADEQALSQLLE-DRD---VDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAA  119 (244)
T ss_dssp             HHHHHHHHHHTTTCHHHHHHTTT-TCC---TTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHHH
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHc-CCC---CCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHH
Confidence            46677777777777777777777 433   23344578899999999999999999999999998887 77999999999


Q ss_pred             HcCcHHHHHHHHhcccccccccccCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcccccccCCCCCCCHHHHHHH
Q psy12891        463 QNGHNQVLEEMRSSKALNVYSKKLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAY  542 (567)
Q Consensus       463 ~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~  542 (567)
                      ..|+.+++++|+++|++++.+|..|+||||+|+..++                              ...+.|||++|+.
T Consensus       120 ~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~------------------------------~~~~~~~l~~a~~  169 (244)
T 3ui2_A          120 GYVRPEVVEALVELGADIEVEDERGLTALELAREILK------------------------------TTPKGNPMQFGRR  169 (244)
T ss_dssp             HTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHHT------------------------------TCCCSSHHHHHHH
T ss_pred             HcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHHHh------------------------------ccCCCCHHHHHHH
Confidence            9999999999999999999999999999999985221                              2356799999999


Q ss_pred             cCCHHHHHHHHhc
Q psy12891        543 SGNENVVRLLLNS  555 (567)
Q Consensus       543 ~~~~~~v~~Ll~~  555 (567)
                      .|+.+++++|+++
T Consensus       170 ~g~~~iv~~L~~~  182 (244)
T 3ui2_A          170 IGLEKVINVLEGQ  182 (244)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             cChHHHHHHHHHh
Confidence            9999999999885

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.88  E-value=2.5e-22  Score=182.99  Aligned_cols=143  Identities=19%  Similarity=0.123  Sum_probs=121.9

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHhcCCCcccc---cCCCCCCCCHHHHHHHc---CcHHHHHHHHHcCCCCCCccCcCCcHH
Q psy12891        385 GNTCAHIAAMQGSVGVIEELMKFDRSGVIS---ARNRVTEATPLQLAAEG---GHANVVRVLVKAGASCTDENKTGFTAV  458 (567)
Q Consensus       385 ~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~---~~~~~~~~t~L~~A~~~---~~~~~v~~Ll~~g~~~~~~~~~g~t~l  458 (567)
                      ..++|+.|+..++.+.++.|++.+.+....   ...+..|.||||+|+..   ++.+++++|+++|+++|.+|..|+|||
T Consensus       151 ~~~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadvn~~d~~G~TpL  230 (301)
T 2b0o_E          151 EPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTAL  230 (301)
T ss_dssp             CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCTTCCCTTCCCHH
T ss_pred             hHHHHhhhhhccCHHHHHHHHhcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCCCCCCCCCCCHH
Confidence            456799999999999999999987764321   11456889999999997   899999999999999999999999999


Q ss_pred             HHHHHcCcHHHHHHHHhcccccccccccCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcccccccCCCCCCCHHH
Q psy12891        459 HLAAQNGHNQVLEEMRSSKALNVYSKKLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLH  538 (567)
Q Consensus       459 ~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~  538 (567)
                      |+|+..|+.+++++|+++|++++.+|..|+||||+|+..++.+++++|++++++                   .|.||||
T Consensus       231 h~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~-------------------~g~tpLh  291 (301)
T 2b0o_E          231 HYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQAG-------------------TFAFPLH  291 (301)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCCCSCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH-------------------TTSSCCC
T ss_pred             HHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCC-------------------CCCChhH
Confidence            999999999999999999999999999999999999999999999999998542                   4789999


Q ss_pred             HHHHcCCH
Q psy12891        539 LAAYSGNE  546 (567)
Q Consensus       539 ~A~~~~~~  546 (567)
                      +|+..|+.
T Consensus       292 ~A~~~g~~  299 (301)
T 2b0o_E          292 VDYSWVIS  299 (301)
T ss_dssp             --------
T ss_pred             HHHhcCCc
Confidence            99998874

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.88  E-value=5.4e-23  Score=187.38  Aligned_cols=135  Identities=22%  Similarity=0.220  Sum_probs=111.4

Q ss_pred             hHhhhcCchHHHHHHHhcCCCCCC------CCCCCChHHHHHHHh---CCHHHHHHHHHcCCCCCCCCCCCCChhHHHHh
Q psy12891         42 IAARVKDGDRCALMLLKSGAGPNL------TTDDGQTPVHAAAKY---GNLVTLQLLLEDGGDPMYKNKIGETPLHLASR  112 (567)
Q Consensus        42 ~~a~~~~~~~~~~~Ll~~g~~~~~------~~~~g~t~L~~A~~~---g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~  112 (567)
                      ..|+..++.+.++.|++.|++++.      .+..|.||||+|+..   |+.+++++|+++|++++.+|..|.||||+|+.
T Consensus       156 ~~A~~~g~~~~v~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadvn~~d~~G~TpLh~A~~  235 (301)
T 2b0o_E          156 WTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAAL  235 (301)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCTTCCCTTCCCHHHHHHH
T ss_pred             hhhhhccCHHHHHHHHhcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCCCCCCCCCCCHHHHHHH
Confidence            455556666667778888888887      688999999999997   89999999999999999999999999999999


Q ss_pred             cCchhHHHHHHHhhhhhhhhHHhhhhcccccccccHHHHHHHhCCcccccccccccHHHHHHHHHcCCCccccccCCCcc
Q psy12891        113 NCKAEVVDLLIQFVQNISQEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGADVSLQTKQNHET  192 (567)
Q Consensus       113 ~~~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~  192 (567)
                      .|+.+++++|+++|++         ++.+|..|.|||++|+..           ++.+++++|+++|++       .+.|
T Consensus       236 ~g~~~~v~~Ll~~gad---------~~~~d~~G~TpL~~A~~~-----------~~~~iv~~Ll~~ga~-------~g~t  288 (301)
T 2b0o_E          236 YNQPDCLKLLLKGRAL---------VGTVNEAGETALDIARKK-----------HHKECEELLEQAQAG-------TFAF  288 (301)
T ss_dssp             TTCHHHHHHHHHTTCC---------CSCCCTTSCCHHHHHHHH-----------TCHHHHHHHHHHHHH-------TTSS
T ss_pred             cCCHHHHHHHHHcCCC---------CCCcCCCCCCHHHHHHHc-----------CCHHHHHHHHHhcCC-------CCCC
Confidence            9999999999999988         688899999999999984           456779999999876       2488


Q ss_pred             HHHHHHhcCCH
Q psy12891        193 AFHYCAVAGNN  203 (567)
Q Consensus       193 ~l~~a~~~~~~  203 (567)
                      |||+|+..|+.
T Consensus       289 pLh~A~~~g~~  299 (301)
T 2b0o_E          289 PLHVDYSWVIS  299 (301)
T ss_dssp             CCC--------
T ss_pred             hhHHHHhcCCc
Confidence            99999887753

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.88  E-value=1.3e-21  Score=176.31  Aligned_cols=124  Identities=23%  Similarity=0.204  Sum_probs=84.3

Q ss_pred             CHHHHHHHcCcHHHHHHHHHcCCCCC------CccCcCCcHHHHHHHc---CcHHHHHHHHhcccccccccccCCcHHHH
Q psy12891        423 TPLQLAAEGGHANVVRVLVKAGASCT------DENKTGFTAVHLAAQN---GHNQVLEEMRSSKALNVYSKKLGVTALHV  493 (567)
Q Consensus       423 t~L~~A~~~~~~~~v~~Ll~~g~~~~------~~~~~g~t~l~~A~~~---~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~  493 (567)
                      ++|+.|+..|+.+.++.+++.|++++      ..+..|+||||+|+..   ++.+++++|+++|++++.+|..|+||||+
T Consensus       132 ~~l~~a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~in~~d~~g~TpLh~  211 (278)
T 1dcq_A          132 HSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHY  211 (278)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCCCHHHH
T ss_pred             hhhhhHhhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCccccCCCCCCHHHH
Confidence            56677777777777777777776633      3356677777777776   66777777777777777777777777777


Q ss_pred             HHHcCCHHHHHHHHhcCCCCCCCCCCCCcccccccCCCCCCCHHHHHHHcCCHHHHHHHHhccCCcc
Q psy12891        494 AAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVRLLLNSAGVQV  560 (567)
Q Consensus       494 A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~g~~~  560 (567)
                      |+..|+.+++++|++++++.             +.+|..|.||||+|+..|+.+++++|+++ |++.
T Consensus       212 A~~~g~~~~v~~Ll~~gad~-------------~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~-ga~~  264 (278)
T 1dcq_A          212 CCLTDNAECLKLLLRGKASI-------------EIANESGETPLDIAKRLKHEHCEELLTQA-LSGR  264 (278)
T ss_dssp             HHHTTCHHHHHHHHHTTCCT-------------TCCCTTSCCHHHHHHHTTCHHHHHHHHHH-HTTC
T ss_pred             HHHcCCHHHHHHHHHcCCCC-------------CCccCCCCCHHHHHHHcCCHHHHHHHHHc-CCCC
Confidence            77777777777777766543             45566677777777777777777777765 5543

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.88  E-value=5.7e-23  Score=180.00  Aligned_cols=133  Identities=23%  Similarity=0.207  Sum_probs=110.3

Q ss_pred             CCCCCChhhHHhhcCChhHHHHHHhhcCCCCChhhhHhhhcCchHHHHHHHhcCCCCCCCCCCCChHHHHHHHhCCHHHH
Q psy12891          7 GKLRETPLHIAARVKDGDRCALMLLKSGAGPNLTNIAARVKDGDRCALMLLKSGAGPNLTTDDGQTPVHAAAKYGNLVTL   86 (567)
Q Consensus         7 ~~~~~t~L~~A~~~g~~~~v~~~L~~~g~~~~~~~~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v   86 (567)
                      +..|+||||+||..|+.+.|.                           +|++.|++++.++..|+||||+||..|+.++|
T Consensus        70 ~~~g~t~L~~A~~~g~~~~v~---------------------------~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v  122 (222)
T 3ehr_A           70 AESIDNPLHEAAKRGNLSWLR---------------------------ECLDNRVGVNGLDKAGSTALYWACHGGHKDIV  122 (222)
T ss_dssp             EEEESCHHHHHHHHTCHHHHH---------------------------HHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHH
T ss_pred             ccccccccccccccCcHHHHH---------------------------HHHhCCCCccccCCCCCCHHHHHHHcCCHHHH
Confidence            456899999999999977443                           57889999999999999999999999999999


Q ss_pred             HHHHHc-CCCCCCCCCCCCChhHHHHhcCchhHHHHHHHhhhhhhhhHHhhhhcccccccccHHHHHHHhCCcccccccc
Q psy12891         87 QLLLED-GGDPMYKNKIGETPLHLASRNCKAEVVDLLIQFVQNISQEKVLEYVNSVNEDGASALHYACQVTKAELIPITS  165 (567)
Q Consensus        87 ~~Ll~~-ga~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~  165 (567)
                      ++|++. |++++.+|..|.||||+|+..|+.+++++|+++|++         ++.++..|.|||++|+.           
T Consensus       123 ~~Ll~~~g~~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~---------~~~~~~~g~t~l~~A~~-----------  182 (222)
T 3ehr_A          123 EMLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGAR---------TDLRNIEKKLAFDMATN-----------  182 (222)
T ss_dssp             HHHTTSTTCCCCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCC---------SCCCCTTSCCHHHHCCS-----------
T ss_pred             HHHHcCCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC---------CccccCCCCCHHHHhcc-----------
Confidence            999999 999999999999999999999999999999999988         78889999999999987           


Q ss_pred             cccHHHHHHHHHcCCCccccc
Q psy12891        166 KEDQKTVKLLLEAGADVSLQT  186 (567)
Q Consensus       166 ~~~~~~v~~Ll~~g~~~~~~~  186 (567)
                      .+..++++.|++.|+......
T Consensus       183 ~~~~~~l~~l~~~~~~~~~~~  203 (222)
T 3ehr_A          183 AACASLLKKKQGTDAVRTLSN  203 (222)
T ss_dssp             HHHHHHHC-------------
T ss_pred             hhHHHHHHHHhccchhhhccc
Confidence            567778999999998776543

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.88  E-value=3e-22  Score=148.12  Aligned_cols=92  Identities=46%  Similarity=0.634  Sum_probs=84.8

Q ss_pred             CCCChhhHHhhcCChhHHHHHHhhcCCCCChhhhHhhhcCchHHHHHHHhcCCCCCCCCCCCChHHHHHHHhCCHHHHHH
Q psy12891          9 LRETPLHIAARVKDGDRCALMLLKSGAGPNLTNIAARVKDGDRCALMLLKSGAGPNLTTDDGQTPVHAAAKYGNLVTLQL   88 (567)
Q Consensus         9 ~~~t~L~~A~~~g~~~~v~~~L~~~g~~~~~~~~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~   88 (567)
                      .|+||||+||..|+.+.+                           ++|++.|+++|.++..|+||||+|+..|+.+++++
T Consensus         1 ~g~t~L~~A~~~~~~~~v---------------------------~~Ll~~g~~~n~~d~~g~t~L~~A~~~~~~~~v~~   53 (93)
T 1n0q_A            1 NGRTPLHLAARNGHLEVV---------------------------KLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKL   53 (93)
T ss_dssp             --CCHHHHHHHHTCHHHH---------------------------HHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred             CCCcHHHHHHHcCCHHHH---------------------------HHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHH
Confidence            489999999999997743                           35888999999999999999999999999999999


Q ss_pred             HHHcCCCCCCCCCCCCChhHHHHhcCchhHHHHHHHhhh
Q psy12891         89 LLEDGGDPMYKNKIGETPLHLASRNCKAEVVDLLIQFVQ  127 (567)
Q Consensus        89 Ll~~ga~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~~~  127 (567)
                      |+++|++++.+|..|.||||+|+..|+.+++++|+++|+
T Consensus        54 Ll~~ga~~~~~d~~g~t~l~~A~~~~~~~~~~~Ll~~ga   92 (93)
T 1n0q_A           54 LLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA   92 (93)
T ss_dssp             HHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred             HHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence            999999999999999999999999999999999999875

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.87  E-value=9.4e-22  Score=177.12  Aligned_cols=195  Identities=17%  Similarity=0.115  Sum_probs=144.4

Q ss_pred             hhcCCCHHHHHHHcCcHHHHHHHHHcCCCCCC-cCcCCCCHHHHHHHcCCHHHHHHHHHhCCCCccccCCCCCcHHHHHH
Q psy12891        315 TLRKQTPLHLAAEAGQLQVCKLLLDLGASIDA-TDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAA  393 (567)
Q Consensus       315 ~~~~~t~L~~a~~~~~~~~v~~Ll~~g~~~~~-~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~  393 (567)
                      |.++.+.++.+...|+..+.+++...-.+... +-..+....+    ....-..+++................++|+.|+
T Consensus        63 d~~~~~~l~~~~~~GN~~~n~i~e~~l~~~~~~kP~~~s~~~~----~~~fI~aKYl~~~f~~~~~~~~~~~l~~l~~a~  138 (278)
T 1dcq_A           63 DVLGTSELLLAKNIGNAGFNEIMECCLPSEDPVKPNPGSDMIA----RKDYITAKYMERRYARKKHADTAAKLHSLCEAV  138 (278)
T ss_dssp             SCCCGGGGHHHHHSCHHHHHHHHTTTCCSSSCCSCCTTCCHHH----HHHHHHHHHTTCTTSCCCSSSHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHcCcHHHHHHHHhhCChhhcCCCCCCCCHHH----HHHHHHHHHHHhhcccccccccchhhhhhhhHh
Confidence            45677889999999987776665443211111 1011112211    111111223222222111111122346899999


Q ss_pred             HcCCHHHHHHHHhcCCCccc---ccCCCCCCCCHHHHHHHc---CcHHHHHHHHHcCCCCCCccCcCCcHHHHHHHcCcH
Q psy12891        394 MQGSVGVIEELMKFDRSGVI---SARNRVTEATPLQLAAEG---GHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHN  467 (567)
Q Consensus       394 ~~~~~~~~~~ll~~~~~~~~---~~~~~~~~~t~L~~A~~~---~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~  467 (567)
                      ..++.+.++.+++.+.+...   ....+..|.||||+|+..   |+.+++++|+++|+++|.+|..|+||||+|+..|+.
T Consensus       139 ~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~in~~d~~g~TpLh~A~~~g~~  218 (278)
T 1dcq_A          139 KTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNA  218 (278)
T ss_dssp             HTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCCCHHHHHHHTTCH
T ss_pred             hhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCccccCCCCCCHHHHHHHcCCH
Confidence            99999999999998776432   334456899999999999   899999999999999999999999999999999999


Q ss_pred             HHHHHHHhcccccccccccCCcHHHHHHHcCCHHHHHHHHhcCCCC
Q psy12891        468 QVLEEMRSSKALNVYSKKLGVTALHVAAYFGQADTVRELLSHVPGT  513 (567)
Q Consensus       468 ~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~  513 (567)
                      +++++|+++|++++.+|..|+||||+|+..|+.+++++|++++++.
T Consensus       219 ~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~  264 (278)
T 1dcq_A          219 ECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQALSGR  264 (278)
T ss_dssp             HHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHcCCCCCCccCCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            9999999999999999999999999999999999999999997754

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.87  E-value=1.1e-21  Score=145.12  Aligned_cols=92  Identities=40%  Similarity=0.531  Sum_probs=86.8

Q ss_pred             CCCCHHHHHHHcCcHHHHHHHHHcCCCCCCccCcCCcHHHHHHHcCcHHHHHHHHhcccccccccccCCcHHHHHHHcCC
Q psy12891        420 TEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLGVTALHVAAYFGQ  499 (567)
Q Consensus       420 ~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~  499 (567)
                      .|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~   80 (93)
T 1n0q_A            1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGH   80 (93)
T ss_dssp             --CCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCC
Confidence            36799999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCC
Q psy12891        500 ADTVRELLSHVP  511 (567)
Q Consensus       500 ~~~~~~Ll~~~~  511 (567)
                      .+++++|+++++
T Consensus        81 ~~~~~~Ll~~ga   92 (93)
T 1n0q_A           81 LEVVKLLLEAGA   92 (93)
T ss_dssp             HHHHHHHHHTTC
T ss_pred             HHHHHHHHHcCC
Confidence            999999999865

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.84  E-value=2.7e-21  Score=149.64  Aligned_cols=109  Identities=37%  Similarity=0.445  Sum_probs=96.8

Q ss_pred             ccCCCCCChhhHHhhcCChhHHHHHHhhcCCCCChhhhHhhhcCchHHHHHHHhcCCCCCCCCCCCChHHHHHHHhCCHH
Q psy12891          5 NSGKLRETPLHIAARVKDGDRCALMLLKSGAGPNLTNIAARVKDGDRCALMLLKSGAGPNLTTDDGQTPVHAAAKYGNLV   84 (567)
Q Consensus         5 ~~~~~~~t~L~~A~~~g~~~~v~~~L~~~g~~~~~~~~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~   84 (567)
                      ..++.|+||||+||..|+.+.+                           ++|+++|++++.++..|+||||+|+..|+.+
T Consensus         4 ~~d~~g~t~L~~A~~~~~~~~~---------------------------~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~   56 (115)
T 2l6b_A            4 WGSKDGNTPLHNAAKNGHAEEV---------------------------KKLLSKGADVNARSKDGNTPLHLAAKNGHAE   56 (115)
T ss_dssp             CCSCSSCCHHHHHHHHTCHHHH---------------------------HHHTTTTCCSSCCCSSSCCTTHHHHTTTCHH
T ss_pred             ccCCCCCCHHHHHHHcCCHHHH---------------------------HHHHHcCCCCCCcCCCCCCHHHHHHHcCcHH
Confidence            4688999999999999997743                           3577888999999999999999999999999


Q ss_pred             HHHHHHHcCCCCCCCCCCCCChhHHHHhcCchhHHHHHHHhhhhhhhhHHhhhhcccccccccHH
Q psy12891         85 TLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVVDLLIQFVQNISQEKVLEYVNSVNEDGASAL  149 (567)
Q Consensus        85 ~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~t~L  149 (567)
                      ++++|+++|++++.+|..|.||||+|+..++.+++++|+++|++         ++.++..+.+|-
T Consensus        57 ~~~~Ll~~g~~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~ga~---------~n~~~~~~~~~~  112 (115)
T 2l6b_A           57 IVKLLLAKGADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGAD---------VNARSWGSSHHH  112 (115)
T ss_dssp             HHHHHTTTTCCTTCCCTTCCCTTHHHHTTTCHHHHHHHHTTSSS---------HHHHSCCCC---
T ss_pred             HHHHHHHcCCCCcccCCCCCCHHHHHHHCCCHHHHHHHHHcCCC---------CCcCCccccccc
Confidence            99999999999999999999999999999999999999999998         566677777663

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.84  E-value=1.7e-20  Score=174.42  Aligned_cols=167  Identities=16%  Similarity=0.073  Sum_probs=113.9

Q ss_pred             CCCCcHHHHHHHc-CCHHHHHHHHhcCCCcccccCCCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCccCcCCcHHHHH
Q psy12891        383 KDGNTCAHIAAMQ-GSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLA  461 (567)
Q Consensus       383 ~~~~~~l~~a~~~-~~~~~~~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A  461 (567)
                      ..+.++||.|+.. ++.+++++|++.+.+..... .+..|.||||+|+..|+.+++++|+++|+++|..|..|+||||+|
T Consensus       197 ~~~~t~L~~Aa~~~g~~~~v~~LL~~Gadvn~~~-~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadvn~~d~~G~TpLh~A  275 (368)
T 3jue_A          197 LHPGALLFRASGHPPSLPTMADALAHGADVNWVN-GGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHA  275 (368)
T ss_dssp             CCHHHHHHHHTSSSCCHHHHHHHHHTTCCTTCCC-TTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred             CCCCcHHHHHHHccCCHHHHHHHHHcCCCCCccc-cccCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHH
Confidence            3556899999999 99999999999887744322 125788999999999999999999999999999999999999999


Q ss_pred             HHcCcHHHHHHHHhcccccccccccCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcccccccCCCCCCCHHHHHH
Q psy12891        462 AQNGHNQVLEEMRSSKALNVYSKKLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAA  541 (567)
Q Consensus       462 ~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~  541 (567)
                      +..|+.+++++|+++|++++.+|..|+||||+|+..++.+++++|+..+.....          ....+..+.|+++.+.
T Consensus       276 ~~~g~~~~v~~LL~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~~~~----------~~~~~~~~~t~l~i~~  345 (368)
T 3jue_A          276 TILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLRLAKMREAE----------AAQGQAGDETYLDIFR  345 (368)
T ss_dssp             HHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC------------------------------
T ss_pred             HHcCcHHHHHHHHHCcCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCccc----------ccccCCCCCCHHHHHH
Confidence            999999999999999999999999999999999999999999999987643321          1234667888888887


Q ss_pred             HcCC--HHHHHHHHhccCCccc
Q psy12891        542 YSGN--ENVVRLLLNSAGVQVD  561 (567)
Q Consensus       542 ~~~~--~~~v~~Ll~~~g~~~~  561 (567)
                      ....  .+-.+.|... +.+++
T Consensus       346 ~~~~~~~~~~ekl~r~-~~~~~  366 (368)
T 3jue_A          346 DFSLMASDDPEKLSRR-SHDLH  366 (368)
T ss_dssp             ----------------------
T ss_pred             HHHhhcCCCHHHHHhc-CCCcC
Confidence            6553  3445555553 55544

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.84  E-value=2e-20  Score=173.94  Aligned_cols=143  Identities=16%  Similarity=0.110  Sum_probs=93.9

Q ss_pred             CCCCHHHHHHHc-CCHHHHHHHHHhCCCCccccC--CCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCCCCHHH
Q psy12891        350 QGQKPIHVAAQN-NFPEVAQIFLRAHPSLVTATT--KDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQ  426 (567)
Q Consensus       350 ~g~t~L~~A~~~-~~~~~~~~Ll~~~~~~~~~~~--~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~t~L~  426 (567)
                      .+.|+||.|+.. ++.++++.|++.+.+ ++..+  ..|.||||+|+..++.+++++|++++.+.   +..+..|.||||
T Consensus       198 ~~~t~L~~Aa~~~g~~~~v~~LL~~Gad-vn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadv---n~~d~~G~TpLh  273 (368)
T 3jue_A          198 HPGALLFRASGHPPSLPTMADALAHGAD-VNWVNGGQDNATPLIQATAANSLLACEFLLQNGANV---NQADSAGRGPLH  273 (368)
T ss_dssp             CHHHHHHHHTSSSCCHHHHHHHHHTTCC-TTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT---TCCCTTSCCHHH
T ss_pred             CCCcHHHHHHHccCCHHHHHHHHHcCCC-CCccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCC---CCCCCCCCCHHH
Confidence            445678888877 788888888877766 45555  67778888888888888888888776553   334456778888


Q ss_pred             HHHHcCcHHHHHHHHHcCCCCCCccCcCCcHHHHHHHcCcHHHHHHHHhccc---ccccccccCCcHHHHHHH
Q psy12891        427 LAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKA---LNVYSKKLGVTALHVAAY  496 (567)
Q Consensus       427 ~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~---~~~~~~~~g~t~l~~A~~  496 (567)
                      +|+..|+.+++++|+++|++++..|..|.||||+|+..++.+++++|+..+.   .....+..+.|+++++..
T Consensus       274 ~A~~~g~~~~v~~LL~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~~~~~~~~~~~~~t~l~i~~~  346 (368)
T 3jue_A          274 HATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQAGDETYLDIFRD  346 (368)
T ss_dssp             HHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC---------------------
T ss_pred             HHHHcCcHHHHHHHHHCcCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCcccccccCCCCCCHHHHHHH
Confidence            8888888888888888888888888888888888888888888888877664   222334455566665543

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.83  E-value=1.1e-20  Score=146.30  Aligned_cols=104  Identities=36%  Similarity=0.442  Sum_probs=69.0

Q ss_pred             ccCcCCcHHHHHHHcCcHHHHHHHHhcccccccccccCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcccccccC
Q psy12891        450 ENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELG  529 (567)
Q Consensus       450 ~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~  529 (567)
                      +|..|+||||+|+..|+.+++++|++.|++++.+|..|+||||+|+..++.+++++|++++++.             +..
T Consensus         5 ~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-------------~~~   71 (115)
T 2l6b_A            5 GSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADV-------------NAR   71 (115)
T ss_dssp             CSCSSCCHHHHHHHHTCHHHHHHHTTTTCCSSCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCCT-------------TCC
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCC-------------ccc
Confidence            4556666666666666666666666666666666666666666666666666666666665443             344


Q ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHhccCCccccccccC
Q psy12891        530 SESGMTPLHLAAYSGNENVVRLLLNSAGVQVDAQTQEN  567 (567)
Q Consensus       530 ~~~g~t~l~~A~~~~~~~~v~~Ll~~~g~~~~~~~~~~  567 (567)
                      |..|.|||++|+..|+.+++++|+++ |+|+|.++.+|
T Consensus        72 d~~g~tpl~~A~~~~~~~~~~~Ll~~-ga~~n~~~~~~  108 (115)
T 2l6b_A           72 SKDGNTPEHLAKKNGHHEIVKLLDAK-GADVNARSWGS  108 (115)
T ss_dssp             CTTCCCTTHHHHTTTCHHHHHHHHTT-SSSHHHHSCCC
T ss_pred             CCCCCCHHHHHHHCCCHHHHHHHHHc-CCCCCcCCccc
Confidence            56677777777777777777777764 77777766554

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.78  E-value=6.4e-19  Score=134.48  Aligned_cols=91  Identities=31%  Similarity=0.485  Sum_probs=82.5

Q ss_pred             ccCCCCCChhhHHhhcCChhHHHHHHhhcCCCCChhhhHhhhcCchHHHHHHHhcCCCCCCCCCCCChHHHHHHHhCCHH
Q psy12891          5 NSGKLRETPLHIAARVKDGDRCALMLLKSGAGPNLTNIAARVKDGDRCALMLLKSGAGPNLTTDDGQTPVHAAAKYGNLV   84 (567)
Q Consensus         5 ~~~~~~~t~L~~A~~~g~~~~v~~~L~~~g~~~~~~~~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~   84 (567)
                      ..+..|+||||+||..|+.+.+                           ++|+++|+++|.+|..|+||||+|+..|+.+
T Consensus        19 ~~~~~g~t~L~~A~~~g~~~~v---------------------------~~Ll~~g~~i~~~d~~g~tpLh~A~~~~~~~   71 (110)
T 2zgd_A           19 HMGSDLGKKLLEAARAGQDDEV---------------------------RILMANGADVAAKDKNGSTPLHLAARNGHLE   71 (110)
T ss_dssp             ---CCHHHHHHHHHHHTCHHHH---------------------------HHHHHTTCCTTCCCTTCCCHHHHHHHTTCHH
T ss_pred             ccCCccchHHHHHHHcCCHHHH---------------------------HHHHHcCCCCCccCCCCCCHHHHHHHcCCHH
Confidence            4678899999999999998744                           3578889999999999999999999999999


Q ss_pred             HHHHHHHcCCCCCCCCCCCCChhHHHHhcCchhHHHHH
Q psy12891         85 TLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVVDLL  122 (567)
Q Consensus        85 ~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~~~~~iv~~L  122 (567)
                      ++++|+++|++++.+|..|.||||+|+..|+.+++++|
T Consensus        72 ~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~L  109 (110)
T 2zgd_A           72 VVKLLLEAGADVXAQDKFGKTAFDISIDNGNEDLAEIL  109 (110)
T ss_dssp             HHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHH
T ss_pred             HHHHHHHcCCCccccccCCCcHHHHHHHcCCHHHHHHh
Confidence            99999999999999999999999999999999999987

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.76  E-value=1.5e-18  Score=132.38  Aligned_cols=92  Identities=30%  Similarity=0.390  Sum_probs=84.7

Q ss_pred             cCCCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCccCcCCcHHHHHHHcCcHHHHHHHHhcccccccccccCCcHHHHH
Q psy12891        415 ARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLGVTALHVA  494 (567)
Q Consensus       415 ~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A  494 (567)
                      ...+..|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|
T Consensus        18 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A   97 (110)
T 2zgd_A           18 SHMGSDLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDIS   97 (110)
T ss_dssp             ----CCHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred             cccCCccchHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccCCCcHHHHH
Confidence            34455788999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHH
Q psy12891        495 AYFGQADTVREL  506 (567)
Q Consensus       495 ~~~~~~~~~~~L  506 (567)
                      +..++.+++++|
T Consensus        98 ~~~~~~~~~~~L  109 (110)
T 2zgd_A           98 IDNGNEDLAEIL  109 (110)
T ss_dssp             HHHTCHHHHHHH
T ss_pred             HHcCCHHHHHHh
Confidence            999999999987

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=81.02  E-value=4.7  Score=39.08  Aligned_cols=110  Identities=12%  Similarity=0.068  Sum_probs=60.6

Q ss_pred             HHHHHHHHcCCCCCCCCCCCCChhHHHHhcCchhHHHHHHHhhhhhhhhHHhhhhcccccc-cccHHHHHHHhCCccccc
Q psy12891         84 VTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVVDLLIQFVQNISQEKVLEYVNSVNED-GASALHYACQVTKAELIP  162 (567)
Q Consensus        84 ~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~-~~t~L~~a~~~~~~~~~~  162 (567)
                      ++++.+.+.|..++....  .+.+...++.|+.+-+..+++.-...       .+.. +.. -.+.+...+..|..+   
T Consensus        91 ~lf~~M~~~G~~Pd~~ty--n~lI~~~~~~g~~~~A~~l~~~M~~~-------g~~P-d~~tyn~lI~~~~~~g~~~---  157 (501)
T 4g26_A           91 DIFKQMIVDKVVPNEATF--TNGARLAVAKDDPEMAFDMVKQMKAF-------GIQP-RLRSYGPALFGFCRKGDAD---  157 (501)
T ss_dssp             HHHHHHHHTTCCCCHHHH--HHHHHHHHHHTCHHHHHHHHHHHHHT-------TCCC-CHHHHHHHHHHHHHTTCHH---
T ss_pred             HHHHHHHHhCCCCCHHHH--HHHHHHHHhcCCHHHHHHHHHHHHHc-------CCCC-ccceehHHHHHHHHCCCHH---
Confidence            455666667766554322  13455666777776655555432110       0000 111 123344444544432   


Q ss_pred             ccccccHHHHHHHHHcCCCccccccCCCccHHHHHHhcCCHHHHHHHHHhc
Q psy12891        163 ITSKEDQKTVKLLLEAGADVSLQTKQNHETAFHYCAVAGNNDVLTGMLEQM  213 (567)
Q Consensus       163 ~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~  213 (567)
                          .-.++++.+.+.|..++..+-   .+.+...+..|+.+-+..+++..
T Consensus       158 ----~A~~l~~~M~~~G~~Pd~~ty---~~Li~~~~~~g~~d~A~~ll~~M  201 (501)
T 4g26_A          158 ----KAYEVDAHMVESEVVPEEPEL---AALLKVSMDTKNADKVYKTLQRL  201 (501)
T ss_dssp             ----HHHHHHHHHHHTTCCCCHHHH---HHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             ----HHHHHHHHHHhcCCCCCHHHH---HHHHHHHhhCCCHHHHHHHHHHH
Confidence                335667777888888776542   45667778889887777777653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	567
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	8e-55
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	9e-48
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	2e-35
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	2e-04
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	9e-33
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	4e-21
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	6e-18
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	8e-12
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	4e-11
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	2e-26
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	6e-19
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	3e-18
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	3e-16
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	1e-15
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	2e-14
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	4e-13
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	5e-05
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	4e-26
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	2e-25
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	3e-24
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	3e-18
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	7e-18
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	5e-08
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	5e-22
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	9e-21
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	5e-19
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	9e-19
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	2e-16
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	1e-08
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	5e-06
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	1e-05
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	5e-22
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	2e-20
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	4e-20
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	1e-17
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	2e-16
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	3e-14
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	6e-22
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	9e-20
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	5e-18
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	7e-18
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	3e-12
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	9e-12
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	2e-06
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	1e-19
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	9e-18
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	3e-16
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	9e-14
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	8e-12
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	2e-19
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	8e-19
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	2e-18
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	6e-17
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	7e-09
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	4e-06
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	3e-05
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	5e-04
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	4e-18
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	1e-16
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	2e-13
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	1e-12
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	7e-12
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	3e-08
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	3e-04
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	4e-04
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	0.003
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	3e-16
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	3e-14
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	3e-12
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	8e-12
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	1e-11
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	8e-10
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	3e-08
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	4e-07
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	6e-07
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	4e-15
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	5e-15
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	6e-15
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	2e-13
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	3e-07
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	4e-06
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	2e-05
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	3e-05
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	4e-11
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	4e-09
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	3e-07
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	1e-06
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	1e-05
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	5e-05
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	3e-04
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	1e-10
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	6e-08
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	6e-07
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	3e-06
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	3e-05
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	0.002
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	0.004
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	2e-08
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	2e-08
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	1e-06
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	2e-05
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	2e-05
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	2e-05
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	4e-05
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	3e-04
d1bi7b_	125	d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Huma	2e-08
d1bi7b_	125	d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Huma	3e-07
d1bi7b_	125	d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Huma	2e-05
d1bi7b_	125	d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Huma	9e-05
d1bi7b_	125	d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Huma	0.004
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	6e-08
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	3e-07
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	2e-06
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	6e-05
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	9e-05
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	2e-04
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	2e-04
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	4e-04
d1ycsb1	130	d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens)	2e-07
d1ycsb1	130	d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens)	8e-06
d1ycsb1	130	d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens)	8e-05
d1myoa_	118	d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus)	3e-04

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  188 bits (478), Expect = 8e-55
 Identities = 108/432 (25%), Positives = 185/432 (42%), Gaps = 44/432 (10%)

Query: 72  TPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVVDLLIQFVQNISQ 131
           TP+H A+  G+L  ++ LL+ G  P   N   ETPLH+A+R    EV   L+Q       
Sbjct: 2   TPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAK--- 58

Query: 132 EKVLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGADVSLQTKQNHE 191
                 VN+  +D  + LH A +                 VKLLLE  A+ +L T   H 
Sbjct: 59  ------VNAKAKDDQTPLHCAAR-----------IGHTNMVKLLLENNANPNLATTAGHT 101

Query: 192 TAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIACNRGHMELVNTMLNN 251
                            +   ++  E   +    T  G+TPL +A   G + +   +L  
Sbjct: 102 PLHIAARE-------GHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLER 154

Query: 252 HARVDVFDQEGRSALHLAAEHGYLKV-----SSGKSLKHSVMSFRLPPHNIIPNGFLVH- 305
            A  +   + G + LH+A  H  L +       G S      +   P H       +   
Sbjct: 155 DAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVA 214

Query: 306 ----DHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQN 361
                +    +  +++  TPLHLAA+ G  ++  LLL   A+ +  +  G  P+H+ AQ 
Sbjct: 215 RSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQE 274

Query: 362 NFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTE 421
               VA + ++ H  +V ATT+ G T  H+A+  G++ +++ L++         +     
Sbjct: 275 GHVPVADVLIK-HGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLG--- 330

Query: 422 ATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQV---LEEMRSSKA 478
            +PL  AA+ GH ++V +L+K GAS  + +  G T + +A + G+  V   L+ +    +
Sbjct: 331 YSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYISVTDVLKVVTDETS 390

Query: 479 LNVYSKKLGVTA 490
             + S K  ++ 
Sbjct: 391 FVLVSDKHRMSF 402

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  169 bits (429), Expect = 9e-48
 Identities = 102/385 (26%), Positives = 171/385 (44%), Gaps = 34/385 (8%)

Query: 192 TAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIACNRGHMELVNTMLNN 251
           T  H  +  G+  ++  +L++  G       N       TPL +A   GH E+   +L N
Sbjct: 2   TPLHVASFMGHLPIVKNLLQR--GASP----NVSNVKVETPLHMAARAGHTEVAKYLLQN 55

Query: 252 HARVDVFDQEGRSALHLAAEHGYLKVS----------SGKSLKHSVMSFRLPPHNIIPNG 301
            A+V+   ++ ++ LH AA  G+  +           +  +               +   
Sbjct: 56  KAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETV 115

Query: 302 FLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQN 361
             + +  A    +T +  TPLH+AA+ G+++V +LLL+  A  +A    G  P+HVA  +
Sbjct: 116 LALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHH 175

Query: 362 NFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTE 421
           N  ++ +  L        +   +G T  HIAA Q  V V   L+++  S    +   VT 
Sbjct: 176 NNLDIVK-LLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVT- 233

Query: 422 ATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNV 481
             PL LAA+ GHA +V +L+   A+    NK+G T +HL AQ GH  V + +     +  
Sbjct: 234 --PLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVD 291

Query: 482 YSKKLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAA 541
            + ++G T LHVA+++G    V+ LL H                     + G +PLH AA
Sbjct: 292 ATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKT-------------KLGYSPLHQAA 338

Query: 542 YSGNENVVRLLLNSAGVQVDAQTQE 566
             G+ ++V LLL   G   +  + +
Sbjct: 339 QQGHTDIVTLLL-KNGASPNEVSSD 362

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  135 bits (340), Expect = 2e-35
 Identities = 91/385 (23%), Positives = 151/385 (39%), Gaps = 58/385 (15%)

Query: 11  ETPLHIAARVKDGDRCALMLLK------SGAGPNLTNIAARVKDGDRCALMLLKSGAGPN 64
           +TPLH AAR+   +   L+L        +    +     A  +      L LL+  A   
Sbjct: 67  QTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQA 126

Query: 65  LTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVVDLLIQ 124
             T  G TP+H AAKYG +   +LLLE    P    K G TPLH+A  +   ++V LL+ 
Sbjct: 127 CMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLP 186

Query: 125 FVQNISQEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGADVSL 184
              +          +S   +G + LH A +  + E+              LL+ G   + 
Sbjct: 187 RGGS---------PHSPAWNGYTPLHIAAKQNQVEVARS-----------LLQYGGSANA 226

Query: 185 QTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIACNRGHMEL 244
           ++ Q   T  H  A  G+ +++  +L +          N     G TPL +    GH+ +
Sbjct: 227 ESVQGV-TPLHLAAQEGHAEMVALLLSKQ------ANGNLGNKSGLTPLHLVAQEGHVPV 279

Query: 245 VNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVSSGKSLKHSVMSFRLPPHNIIPNGFLV 304
            + ++ +   VD   + G + LH+A+ +G                        I     +
Sbjct: 280 ADVLIKHGVMVDATTRMGYTPLHVASHYGN-----------------------IKLVKFL 316

Query: 305 HDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFP 364
             H A ++  T    +PLH AA+ G   +  LLL  GAS +     G  P+ +A +  + 
Sbjct: 317 LQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYI 376

Query: 365 EVAQI--FLRAHPSLVTATTKDGNT 387
            V  +   +    S V  + K   +
Sbjct: 377 SVTDVLKVVTDETSFVLVSDKHRMS 401

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.5 bits (96), Expect = 2e-04
 Identities = 10/34 (29%), Positives = 19/34 (55%), Gaps = 1/34 (2%)

Query: 534 MTPLHLAAYSGNENVVRLLLNSAGVQVDAQTQEN 567
           +TPLH+A++ G+  +V+ LL   G   +    + 
Sbjct: 1   LTPLHVASFMGHLPIVKNLL-QRGASPNVSNVKV 33

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score =  126 bits (317), Expect = 9e-33
 Identities = 54/355 (15%), Positives = 97/355 (27%), Gaps = 63/355 (17%)

Query: 222 LNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQE-----------GRSALHLAA 270
           L   +      + +   +   ++   +   +A  +   ++                 +AA
Sbjct: 39  LMTLSYKEAIHIFLPGTKNMEQVRQLLCLYYAHYNRNAKQLWSDAHKKGIKSEVICFVAA 98

Query: 271 EHGYLKVSSGKSLKHSVMSFRLPPHNIIPNGFLVHDHAAVIDILTLRKQTPLHLAAEAGQ 330
             G        +L                   L+     ++ ++         LAAE G 
Sbjct: 99  ITGCSSAL--DTLC------------------LLLTSDEIVKVIQAENYQAFRLAAENGH 138

Query: 331 LQVCKLLLDLGASIDATD--DQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTK--DGN 386
           L V   L +L  +        +      +AA+N    V        P+  TA  +  +  
Sbjct: 139 LHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYY 198

Query: 387 TCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGAS 446
                A  +G   VI  L+                A       E G   V   + +    
Sbjct: 199 AFRWAAVGRGHHNVINFLLDCPVML----------AYAEIHEFEYGEKYVNPFIAR---- 244

Query: 447 CTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLGVTALHVAAYFGQADTVREL 506
             +  K    A  L+  +G   ++ +    +          +  L         D +R L
Sbjct: 245 HVNRLKEMHDAFKLSNPDGVFDLVTKSECLQG------FYMLRNLIRRNDEVLLDDIRFL 298

Query: 507 LSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVRLLLNSAGVQVD 561
           LS     +K+  PT                L LA   GN+    LLL+   V   
Sbjct: 299 LSI--PGIKALAPTATI------PGDANELLRLALRLGNQGACALLLSIPSVLAL 345

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 92.6 bits (229), Expect = 4e-21
 Identities = 43/332 (12%), Positives = 74/332 (22%), Gaps = 63/332 (18%)

Query: 14  LHIAARVKDGDRCALMLLKSGAGPNLTNIAARVKDGD--RCALMLLKSGAGPNLTTDDGQ 71
            +           +    K      +  +AA            +LL S     +   +  
Sbjct: 68  YYAHYNRNAKQLWSDAHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENY 127

Query: 72  TPVHAAAKYGNLVTLQLLLEDGGDPMYKNK--IGETPLHLASRNCKAEVVDLLIQFVQNI 129
                AA+ G+L  L  L E     +             LA+ N    V++ L       
Sbjct: 128 QAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRL------C 181

Query: 130 SQEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGADVSLQTKQN 189
                        E+  +    A                   +  LL+    ++      
Sbjct: 182 ELAPTEATAMIQAENYYAFRWAAVGRGHHN-----------VINFLLDCPVMLA------ 224

Query: 190 HETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIACNRGHMELVNTML 249
              A  +    G   V   +   ++  +                 ++   G  +LV    
Sbjct: 225 --YAEIHEFEYGEKYVNPFIARHVNRLK----------EMHDAFKLSNPDGVFDLVT--- 269

Query: 250 NNHARVDVFDQEGRSALHLAAEHGYLKVSSGKSLKHSVMSFRLPPHNIIPNGFLVHDHAA 309
                  +        L    +   L     + L        L P   IP          
Sbjct: 270 ---KSECLQGFYMLRNLIRRNDEVLLDDI--RFLLSIPGIKALAPTATIPG--------- 315

Query: 310 VIDILTLRKQTPLHLAAEAGQLQVCKLLLDLG 341
                       L LA   G    C LLL + 
Sbjct: 316 -------DANELLRLALRLGNQGACALLLSIP 340

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 83.0 bits (204), Expect = 6e-18
 Identities = 42/278 (15%), Positives = 78/278 (28%), Gaps = 29/278 (10%)

Query: 307 HAAVIDILTLRKQTPLHLA-AEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPE 365
           +  + +I        L L      +      +     S+     +    I +    N  +
Sbjct: 1   NLTIHNIENYENDPQLRLIPWILWENLFQHFISANELSLMTLSYKEAIHIFLPGTKNMEQ 60

Query: 366 VAQIFLRAHPSL----------VTATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISA 415
           V Q+    +                          +AA+ G    ++ L     S  I  
Sbjct: 61  VRQLLCLYYAHYNRNAKQLWSDAHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVK 120

Query: 416 RNRVTEATPLQLAAEGGHANVVRVLVKAGASC--TDENKTGFTAVHLAAQNGH---NQVL 470
             +       +LAAE GH +V+  L +   +          + A  LAA+NGH      L
Sbjct: 121 VIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRL 180

Query: 471 EEMRSSKALNVYSKKLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGEL-- 528
            E+  ++A  +   +        A   G  + +  LL      + +         GE   
Sbjct: 181 CELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDC--PVMLAYAEIHEFEYGEKYV 238

Query: 529 ---------GSESGMTPLHLAAYSGNENVVRLLLNSAG 557
                      +       L+   G  ++V       G
Sbjct: 239 NPFIARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQG 276

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 64.5 bits (156), Expect = 8e-12
 Identities = 25/159 (15%), Positives = 46/159 (28%), Gaps = 25/159 (15%)

Query: 421 EATPLQLAAEGGHANVVRVLVKAGASCT-----------DENKTGFTAVHLAAQNGHNQV 469
           EA  + L        V ++L    A               +         +AA  G +  
Sbjct: 46  EAIHIFLPGTKNMEQVRQLLCLYYAHYNRNAKQLWSDAHKKGIKSEVICFVAAITGCSSA 105

Query: 470 LEEMR---SSKALNVYSKKLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLG 526
           L+ +    +S  +    +     A  +AA  G    +  L                + + 
Sbjct: 106 LDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCEL-----------APTEIM 154

Query: 527 ELGSESGMTPLHLAAYSGNENVVRLLLNSAGVQVDAQTQ 565
            +          LAA +G+ +V+  L   A  +  A  Q
Sbjct: 155 AMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQ 193

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 62.2 bits (150), Expect = 4e-11
 Identities = 31/274 (11%), Positives = 59/274 (21%), Gaps = 77/274 (28%)

Query: 12  TPLHIAARVKDGDRCALMLLKSGAGPNLTNIAARVKDGDRCALMLLKSGAGPNLTTDDGQ 71
               +AA           L +      +  I                          +  
Sbjct: 128 QAFRLAAENGHLH-VLNRLCELAPTEIMAMI------------------------QAENY 162

Query: 72  TPVHAAAKYGNLVTLQLLLEDGGDP---MYKNKIGETPLHLASRNCKAEVVDLLIQFVQN 128
                AA+ G+L  L  L E        M + +        A       V++ L+     
Sbjct: 163 HAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLD---- 218

Query: 129 ISQEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGADVSLQTKQ 188
                            A A  +  +  +  +              +      +      
Sbjct: 219 ------------CPVMLAYAEIHEFEYGEKYV-----------NPFIARHVNRLK----- 250

Query: 189 NHETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIACNRGHMELVNTM 248
               AF      G  D++T            K+   Q       L+   +   ++ +  +
Sbjct: 251 EMHDAFKLSNPDGVFDLVT------------KSECLQGFYMLRNLIRRNDEVLLDDIRFL 298

Query: 249 LN-----NHARVDVFDQEGRSALHLAAEHGYLKV 277
           L+       A       +    L LA   G    
Sbjct: 299 LSIPGIKALAPTATIPGDANELLRLALRLGNQGA 332

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score =  106 bits (264), Expect = 2e-26
 Identities = 54/304 (17%), Positives = 101/304 (33%), Gaps = 29/304 (9%)

Query: 71  QTPVH-AAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVVDLLIQFVQNI 129
           ++P+       G+    + +  +  + +   +   T LH  + N  AE  + LI      
Sbjct: 1   ESPIKLHTEAAGSYAITEPITRESVN-IIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKE 59

Query: 130 SQEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGADVSLQTKQN 189
                   VN+++ D  + L  A    +  L+    K             + +       
Sbjct: 60  CIAA-GADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANR 118

Query: 190 HETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIACNRGHMELVNTML 249
                 Y   +         L++   T +    + +         +   +G         
Sbjct: 119 DFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAK----VDY 174

Query: 250 NNHARVDVFDQEGRSALHLAAEHGYLKVSSGKSLKHSVMSFRLPPHNIIPNGFLVHDHAA 309
           +  AR D    +GR+ALH AA+                        N+    +LV +  +
Sbjct: 175 DGAARKDSEKYKGRTALHYAAQV----------------------SNMPIVKYLVGEKGS 212

Query: 310 VIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQI 369
             D      +TP+ LAA+ G+++V   L+  GAS++A D        +A  NN   +  I
Sbjct: 213 NKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNHHNIVDI 272

Query: 370 FLRA 373
           F R 
Sbjct: 273 FDRC 276

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 85.2 bits (209), Expect = 6e-19
 Identities = 46/256 (17%), Positives = 84/256 (32%), Gaps = 34/256 (13%)

Query: 318 KQTPLHLAAEAGQLQVCKLLLDL--------GASIDATDDQGQKPIHVAAQNNFPEVAQI 369
            +T LH  A     +  + L+          GA ++A D     P+ +A       +   
Sbjct: 33  NRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAY 92

Query: 370 FLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAA 429
            ++A          + +     AA     G++  ++   +             T L + A
Sbjct: 93  LMKAGADPTIYNKSERSALHQAAAN-RDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVA 151

Query: 430 EGGHA-----------NVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKA 478
                              +V     A    E   G TA+H AAQ  +  +++ +   K 
Sbjct: 152 HNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKG 211

Query: 479 LNVYSK-KLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPL 537
            N   + + G T + +AA  G+ + V  L+             GAS   E    +  T  
Sbjct: 212 SNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQ-----------GASV--EAVDATDHTAR 258

Query: 538 HLAAYSGNENVVRLLL 553
            LA  + + N+V +  
Sbjct: 259 QLAQANNHHNIVDIFD 274

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 82.9 bits (203), Expect = 3e-18
 Identities = 40/290 (13%), Positives = 87/290 (30%), Gaps = 28/290 (9%)

Query: 191 ETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSI-GWTPLLIACNRGHMELVNTML 249
           E+       A  +  +T  +         +++N        T L    +    E    ++
Sbjct: 1   ESPIKLHTEAAGSYAITEPI-------TRESVNIIDPRHNRTVLHWIASNSSAEKSEDLI 53

Query: 250 NNH--------ARVDVFDQEGRSALHLAAEHGYLKVSSGKSLKHSVMSFRLPPHNIIPNG 301
            +         A V+  D +  + L LA      ++ +      +  +          + 
Sbjct: 54  VHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQ 113

Query: 302 FLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQN 361
              +    ++  +    +    +           +++      D            A  +
Sbjct: 114 AAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVD 173

Query: 362 NFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTE 421
                         +   +    G T  H AA   ++ +++        G    +     
Sbjct: 174 YD----------GAARKDSEKYKGRTALHYAAQVSNMPIVK--YLVGEKGSNKDKQDEDG 221

Query: 422 ATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLE 471
            TP+ LAA+ G   VV  L++ GAS    + T  TA  LA  N H+ +++
Sbjct: 222 KTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNHHNIVD 271

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 76.7 bits (187), Expect = 3e-16
 Identities = 49/274 (17%), Positives = 100/274 (36%), Gaps = 16/274 (5%)

Query: 172 VKLLLEAGADVSLQTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKA--LNKQTSIG 229
            + +     ++     +++ T  H+ A   + +    ++   +   I+    +N      
Sbjct: 17  TEPITRESVNI--IDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDE 74

Query: 230 WTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVSSGKSLKHSVMS 289
            TPL++A       LV  ++   A   ++++  RSALH AA +    +        +   
Sbjct: 75  NTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGM---MVYMLNSTK 131

Query: 290 FRLPPHNIIPNGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDD 349
            +     +  NG       A  +         L +   A             A  D+   
Sbjct: 132 LKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDG------AARKDSEKY 185

Query: 350 QGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIEELMKFDR 409
           +G+  +H AAQ +   + +  +    S      +DG T   +AA +G + V+  L+   +
Sbjct: 186 KGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLI--QQ 243

Query: 410 SGVISARNRVTEATPLQLAAEGGHANVVRVLVKA 443
              + A +  T+ T  QLA    H N+V +  + 
Sbjct: 244 GASVEAVDA-TDHTARQLAQANNHHNIVDIFDRC 276

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 75.2 bits (183), Expect = 1e-15
 Identities = 49/274 (17%), Positives = 94/274 (34%), Gaps = 31/274 (11%)

Query: 4   QNSGKLRETPLHIAARVKDGDRCALMLLKSGAGPNLTNIAARVKDGDRCALMLLKSGAGP 63
               +   T LH  A     ++   ++                      A   + +GA  
Sbjct: 27  IIDPRHNRTVLHWIASNSSAEKSEDLI-------------------VHEAKECIAAGADV 67

Query: 64  NLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVVDLLI 123
           N    D  TP+  A        +  L++ G DP   NK   + LH A+ N    ++  ++
Sbjct: 68  NAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYML 127

Query: 124 QFVQNISQEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGADVS 183
              +     + L+          +      QV  A+L+     +         ++     
Sbjct: 128 NSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDS----- 182

Query: 184 LQTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIACNRGHME 243
              K    TA HY A   N  ++  ++ +    +     +KQ   G TP+++A   G +E
Sbjct: 183 --EKYKGRTALHYAAQVSNMPIVKYLVGEKGSNK-----DKQDEDGKTPIMLAAQEGRIE 235

Query: 244 LVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKV 277
           +V  ++   A V+  D    +A  LA  + +  +
Sbjct: 236 VVMYLIQQGASVEAVDATDHTARQLAQANNHHNI 269

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 71.3 bits (173), Expect = 2e-14
 Identities = 45/260 (17%), Positives = 81/260 (31%), Gaps = 17/260 (6%)

Query: 319 QTPLHLAAEA-GQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSL 377
           ++P+ L  EA G   + + +     +I       +  +H  A N+  E ++  +      
Sbjct: 1   ESPIKLHTEAAGSYAITEPITRESVNIIDPRH-NRTVLHWIASNSSAEKSEDLIVHEAKE 59

Query: 378 -------VTATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAE 430
                  V A   D NT   +A +         +    ++G        +E + L  AA 
Sbjct: 60  CIAAGADVNAMDCDENTPLMLAVLARRR---RLVAYLMKAGADPTIYNKSERSALHQAAA 116

Query: 431 GGHANVVRVLVKAGASCTDENKTGFT---AVHLAAQNGHNQVLEEMRSSKALNVYSKKLG 487
                ++  ++ +     D  +       A+ + A N     +   +            G
Sbjct: 117 NRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDG 176

Query: 488 VTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNEN 547
                   Y G+              VK       S   +   E G TP+ LAA  G   
Sbjct: 177 AARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDK-QDEDGKTPIMLAAQEGRIE 235

Query: 548 VVRLLLNSAGVQVDAQTQEN 567
           VV  L+   G  V+A    +
Sbjct: 236 VVMYLI-QQGASVEAVDATD 254

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 67.8 bits (164), Expect = 4e-13
 Identities = 16/65 (24%), Positives = 30/65 (46%)

Query: 60  GAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVV 119
           G+  +   +DG+TP+  AA+ G +  +  L++ G      +    T   LA  N    +V
Sbjct: 211 GSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNHHNIV 270

Query: 120 DLLIQ 124
           D+  +
Sbjct: 271 DIFDR 275

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 43.2 bits (100), Expect = 5e-05
 Identities = 9/74 (12%), Positives = 23/74 (31%), Gaps = 1/74 (1%)

Query: 18  ARVKDGDRCALMLLKSGAGPNLTNIAARVKDGDRCALMLLKSGAGPNLTTDDGQTPVHAA 77
            +   G++ +    +   G     +AA+    +   + L++ GA          T    A
Sbjct: 203 VKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIE-VVMYLIQQGASVEAVDATDHTARQLA 261

Query: 78  AKYGNLVTLQLLLE 91
               +   + +   
Sbjct: 262 QANNHHNIVDIFDR 275

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  106 bits (264), Expect = 4e-26
 Identities = 59/308 (19%), Positives = 114/308 (37%), Gaps = 39/308 (12%)

Query: 69  DGQTPVHAAAKYGNLVTLQLLLEDGGDPMYK-NKIGETPLHLASRNCKAEVVDLLIQFVQ 127
           +    +  A +  ++  +Q LLE G +  ++  + G TPLH A +  + ++V+LL++   
Sbjct: 4   EDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGA 63

Query: 128 NISQEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGADVSLQTK 187
           +    K       +    A ++                     T                
Sbjct: 64  DPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFT---------------- 107

Query: 188 QNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIACNRGHMELVNT 247
                A  Y  V     +           +  +   +    G T L+ A  +GH+E++  
Sbjct: 108 -AFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKI 166

Query: 248 MLNNH-ARVDVFDQEGRSALHLAAEHGYLKVSSGKSLKHSVMSFRLPPHNIIPNGFLVHD 306
           +L+   A V+  D  GR+AL                  H+++S        I +  L  D
Sbjct: 167 LLDEMGADVNACDNMGRNALI-----------------HALLSSDDSDVEAITHLLL--D 207

Query: 307 HAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDL-GASIDATDDQGQKPIHVAAQNNFPE 365
           H A +++   R +TPL LA E   L + + LL+     I+ TD  G+  + +A +    +
Sbjct: 208 HGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKK 267

Query: 366 VAQIFLRA 373
           +A++  + 
Sbjct: 268 IAELLCKR 275

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  104 bits (259), Expect = 2e-25
 Identities = 57/289 (19%), Positives = 100/289 (34%), Gaps = 58/289 (20%)

Query: 320 TPLHLAAEAGQLQVCKLLLDLGASIDATDDQ-GQKPIHVAAQNNFPEVAQIFLR------ 372
             L  A +   + + + LL+ GA+++  +++ G  P+H A Q +  ++ ++ LR      
Sbjct: 7   HLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPV 66

Query: 373 --------------------------AHPSLVTATTKDGNTCAHIAAMQGSVGVIEELMK 406
                                     +  + V      G T    AA+ G V  ++ L K
Sbjct: 67  LRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYK 126

Query: 407 -------FDRSGVISARNRVTEATPLQLAAEGGHANVVRVLV-KAGASCTDENKTGFTAV 458
                    ++     R R   AT L  AAE GH  V+++L+ + GA     +  G  A+
Sbjct: 127 RGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNAL 186

Query: 459 HLAAQNGHNQVLEEMRS---SKALNVYSK-KLGVTALHVAAYFGQADTVRELLSHVPGTV 514
             A  +  +  +E +         +V  + + G T L +A        V+ LL      +
Sbjct: 187 IHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEI 246

Query: 515 KSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVRLLLNSAGVQVDAQ 563
                             G T L LA     + +  LL    G   D  
Sbjct: 247 ------------NDTDSDGKTALLLAVELKLKKIAELLC-KRGASTDCG 282

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  100 bits (249), Expect = 3e-24
 Identities = 62/301 (20%), Positives = 102/301 (33%), Gaps = 68/301 (22%)

Query: 144 DGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGADVSLQTKQNHETAFHYCAVAGNN 203
           +    L  A Q            ED   V+ LLE GA+V+ Q ++   T  H        
Sbjct: 4   EDNHLLIKAVQ-----------NEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSRE 52

Query: 204 DVLTGMLEQMSGTEISKALNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGR 263
           D++  +L   +          +   G TP L+A   G ++L+   L+  A V+  D  G 
Sbjct: 53  DIVELLLRHGADP------VLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGF 106

Query: 264 SALHLAAEHGYLKVSSGKSLKHSVMSFRLPPHNIIPNGFLVHDHAAVIDILTLRKQTPLH 323
           +A   AA +G +K       + + ++ R                    + L     T L 
Sbjct: 107 TAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQ-------------ERLRKGGATALM 153

Query: 324 LAAEAGQLQVCKLL--------------------------------------LDLGASID 345
            AAE G ++V K+L                                      LD GA ++
Sbjct: 154 DAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVN 213

Query: 346 ATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIEELM 405
              ++G+ P+ +A +     + Q  L      +  T  DG T   +A       + E L 
Sbjct: 214 VRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLC 273

Query: 406 K 406
           K
Sbjct: 274 K 274

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 83.1 bits (204), Expect = 3e-18
 Identities = 58/265 (21%), Positives = 98/265 (36%), Gaps = 37/265 (13%)

Query: 11  ETPLHIAAR------VKDGDRCALMLLKSGAGPNLTNIAARVKDGDRCALMLLKSGAGPN 64
            TPLH A +      V+   R     +          + A +    +   + L  GA  N
Sbjct: 40  WTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVN 99

Query: 65  LTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKN----------KIGETPLHLASRNC 114
                G T    AA YG +  L+ L + G +   +           K G T L  A+   
Sbjct: 100 ECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKG 159

Query: 115 KAEVVDLLIQFVQNISQEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKL 174
             EV+ +L+        +++   VN+ +  G +AL +A   +          + +    L
Sbjct: 160 HVEVLKILL--------DEMGADVNACDNMGRNALIHALLSSD-------DSDVEAITHL 204

Query: 175 LLEAGADVSLQTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLL 234
           LL+ GADV+++ +   +T         +  ++  +LEQ    EI    N   S G T LL
Sbjct: 205 LLDHGADVNVRGE-RGKTPLILAVEKKHLGLVQRLLEQ-EHIEI----NDTDSDGKTALL 258

Query: 235 IACNRGHMELVNTMLNNHARVDVFD 259
           +A      ++   +    A  D  D
Sbjct: 259 LAVELKLKKIAELLCKRGASTDCGD 283

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 81.9 bits (201), Expect = 7e-18
 Identities = 42/184 (22%), Positives = 72/184 (39%), Gaps = 5/184 (2%)

Query: 384 DGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKA 443
           + N     A     V ++++L+  +    ++ +      TPL  A +    ++V +L++ 
Sbjct: 4   EDNHLLIKAVQNEDVDLVQQLL--EGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRH 61

Query: 444 GASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLGVTALHVAAYFGQADTV 503
           GA      K G T   LAA  G  ++L+   S  A        G TA   AA +G+   +
Sbjct: 62  GADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKAL 121

Query: 504 RELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVRLLLNSAGVQVDAQ 563
           + L                    E   + G T L  AA  G+  V+++LL+  G  V+A 
Sbjct: 122 KFLYKRGANVNLRRKTKEDQ---ERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNAC 178

Query: 564 TQEN 567
               
Sbjct: 179 DNMG 182

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.3 bits (124), Expect = 5e-08
 Identities = 20/108 (18%), Positives = 37/108 (34%), Gaps = 8/108 (7%)

Query: 3   QQNSGKLRETPLHIAARVKDGDRCALMLLKSGAGPNLTN--------IAARVKDGDRCAL 54
             N G+       +++   D +    +LL  GA  N+          +A   K       
Sbjct: 178 CDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQR 237

Query: 55  MLLKSGAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKI 102
           +L +     N T  DG+T +  A +       +LL + G      + +
Sbjct: 238 LLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCGDLV 285

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 93.6 bits (231), Expect = 5e-22
 Identities = 54/260 (20%), Positives = 92/260 (35%), Gaps = 15/260 (5%)

Query: 222 LNKQTSIGWTPLLIACNRGHMELVNTMLNNHA---RVDVFDQEGRSALHLAAEHGYLKVS 278
               T  G T L +A    H   ++ +L   A    +D+ +  G++ALHLAA  G     
Sbjct: 2   FGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTV 61

Query: 279 SGKSLKHSVMSFRLPPHNIIPNGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLL 338
                  + +       +   +            +L   + +    A++           
Sbjct: 62  EKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTY--------- 112

Query: 339 DLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSV 398
            L  S D T D    P  V +Q N     +         + A   DG+T  H+A +    
Sbjct: 113 -LTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDA 171

Query: 399 GVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAV 458
            ++   +  D    ++        TPL LA E   A+V+ +L+KAGA  T     G T +
Sbjct: 172 EMVR--LLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPL 229

Query: 459 HLAAQNGHNQVLEEMRSSKA 478
             A    +  +   +R+  A
Sbjct: 230 GSALLRPNPILARLLRAHGA 249

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 89.8 bits (221), Expect = 9e-21
 Identities = 50/251 (19%), Positives = 76/251 (30%), Gaps = 29/251 (11%)

Query: 319 QTPLHLAAEAGQLQVCKLLLDLGAS---IDATDDQGQKPIHVAAQNNFPEVAQIFLRAHP 375
            T LHLA           LL   A    +D  +D GQ  +H+AA        +    A  
Sbjct: 10  DTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKL-YAAG 68

Query: 376 SLVTATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEA-----------TP 424
           + V    + G+T  H+A    +      L++   S    A +                  
Sbjct: 69  AGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPA 128

Query: 425 LQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSK 484
              +                     EN  G T +H+A  +   +++  +R + A     +
Sbjct: 129 AVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPE 188

Query: 485 KLGV-TALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYS 543
                T LH+A     A  +  LL             GA          G TPL  A   
Sbjct: 189 PTCGRTPLHLAVEAQAASVLELLLKA-----------GADP--TARMYGGRTPLGSALLR 235

Query: 544 GNENVVRLLLN 554
            N  + RLL  
Sbjct: 236 PNPILARLLRA 246

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 84.8 bits (208), Expect = 5e-19
 Identities = 53/310 (17%), Positives = 88/310 (28%), Gaps = 71/310 (22%)

Query: 67  TDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMY---KNKIGETPLHLASRNCKAEVVDLLI 123
           T+DG T +H A  + +   L  LL       Y   +N +G+T LHLA+            
Sbjct: 6   TEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILG--------- 56

Query: 124 QFVQNISQEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGADVS 183
           +             V      G +ALH AC+                   +LL+      
Sbjct: 57  EASTVEKLYAAGAGVLVAERGGHTALHLACR-----------VRAHTCACVLLQPRPSHP 105

Query: 184 LQTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIACNRGHME 243
                 + T    C                             +      + +      E
Sbjct: 106 RDASDTYLTQSQDCT--------------------------PDTSHAPAAVDSQPNPENE 139

Query: 244 LVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVSSGKSLKHSVMSFRLPPHNIIPNGFL 303
                 +   +++  + +G                      H+ +   +   +      L
Sbjct: 140 EEPRDEDWRLQLEAENYDG----------------------HTPLHVAVIHKDAEMVRLL 177

Query: 304 VHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNF 363
               A +        +TPLHLA EA    V +LLL  GA   A    G+ P+  A     
Sbjct: 178 RDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPN 237

Query: 364 PEVAQIFLRA 373
           P +A++    
Sbjct: 238 PILARLLRAH 247

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 84.0 bits (206), Expect = 9e-19
 Identities = 43/267 (16%), Positives = 82/267 (30%), Gaps = 36/267 (13%)

Query: 11  ETPLHIAARVKDGDRCALMLLKSGAGPNLTNIAARVKDGDRCALMLLKSGAGPNLTTDDG 70
           +T LH+A   +        LL   AG    ++                         D G
Sbjct: 10  DTALHLAVIHQHEP-FLDFLLGFSAGHEYLDL-----------------------QNDLG 45

Query: 71  QTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVVDLLIQFVQNIS 130
           QT +H AA  G   T++ L   G   +   + G T LHLA R        +L+Q   +  
Sbjct: 46  QTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHP 105

Query: 131 QEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGADVSLQTKQNH 190
           ++    Y+    +      H          +      + +      +    +      + 
Sbjct: 106 RDASDTYLTQSQDCTPDTSHAPA------AVDSQPNPENEEEPRDEDWRLQLE-AENYDG 158

Query: 191 ETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIACNRGHMELVNTMLN 250
            T  H   +  + +++  + +  +          + + G TPL +A       ++  +L 
Sbjct: 159 HTPLHVAVIHKDAEMVRLLRDAGADLN-----KPEPTCGRTPLHLAVEAQAASVLELLLK 213

Query: 251 NHARVDVFDQEGRSALHLAAEHGYLKV 277
             A        GR+ L  A       +
Sbjct: 214 AGADPTARMYGGRTPLGSALLRPNPIL 240

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 77.1 bits (188), Expect = 2e-16
 Identities = 36/155 (23%), Positives = 62/155 (40%), Gaps = 5/155 (3%)

Query: 417 NRVTE--ATPLQLAAEGGHANVVRVLVKAGASCTD---ENKTGFTAVHLAAQNGHNQVLE 471
             VTE   T L LA    H   +  L+   A       +N  G TA+HLAA  G    +E
Sbjct: 3   GYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVE 62

Query: 472 EMRSSKALNVYSKKLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSE 531
           ++ ++ A  + +++ G TALH+A           LL   P   +    T  +   +   +
Sbjct: 63  KLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPD 122

Query: 532 SGMTPLHLAAYSGNENVVRLLLNSAGVQVDAQTQE 566
           +   P  + +    EN          +Q++A+  +
Sbjct: 123 TSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYD 157

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 53.6 bits (127), Expect = 1e-08
 Identities = 26/130 (20%), Positives = 42/130 (32%), Gaps = 8/130 (6%)

Query: 3   QQNSGKLRETPLHIAARVKDGDRCALMLLKSGA--------GPNLTNIAARVKDGDRCAL 54
           Q  +      P  + ++    +                   G    ++A   KD +   L
Sbjct: 117 QDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRL 176

Query: 55  MLLKSGAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNC 114
           +              G+TP+H A +      L+LLL+ G DP  +   G TPL  A    
Sbjct: 177 LRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRP 236

Query: 115 KAEVVDLLIQ 124
              +  LL  
Sbjct: 237 NPILARLLRA 246

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 45.9 bits (107), Expect = 5e-06
 Identities = 14/42 (33%), Positives = 21/42 (50%)

Query: 52  CALMLLKSGAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDG 93
              +LLK+GA P      G+TP+ +A    N +  +LL   G
Sbjct: 207 VLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHG 248

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 45.1 bits (105), Expect = 1e-05
 Identities = 34/204 (16%), Positives = 56/204 (27%), Gaps = 12/204 (5%)

Query: 8   KLRETPLHIAAR------VKDGDRCALMLLKSGAGPNLTNIAARVKDGDRCALMLLKSGA 61
            L +T LH+AA       V+        +L +  G +     A       CA +LL+   
Sbjct: 43  DLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRP 102

Query: 62  GPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVVDL 121
                  D                   +     D     +  E P     R         
Sbjct: 103 SHPRDASDTYLTQSQDCTPDTSHAPAAV-----DSQPNPENEEEPRDEDWRLQLEAENYD 157

Query: 122 LIQFVQNISQEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGAD 181
               +      K  E V  + + GA          +  L      +    ++LLL+AGAD
Sbjct: 158 GHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGAD 217

Query: 182 VSLQTKQNHETAFHYCAVAGNNDV 205
            + +      T      +  N  +
Sbjct: 218 PTARMY-GGRTPLGSALLRPNPIL 240

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 92.3 bits (228), Expect = 5e-22
 Identities = 47/221 (21%), Positives = 85/221 (38%), Gaps = 16/221 (7%)

Query: 233 LLIACNRGHMELVNTMLNNH-ARVDVFDQEGRSALHLAAEHGYLKVSSGKSLKHSVMSFR 291
           +      G +E +   +    +     DQ+ R+ALH A   G+ ++          ++ +
Sbjct: 7   VCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDK 66

Query: 292 LPPHNIIPNGFLVHDHA----------AVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLG 341
                   +                  A ++ +     TPLH AA   + ++  +LL+ G
Sbjct: 67  DDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGG 126

Query: 342 ASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVI 401
           A+ DA D      +H AA           L  + +       +GNT  H+A  +  V   
Sbjct: 127 ANPDAKDHYEATAMHRAAAKGN-LKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEA 185

Query: 402 EELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVK 442
           + L+    S  I   N+  E TPLQ+A  GG   +++ +V+
Sbjct: 186 KLLVSQGAS--IYIENK-EEKTPLQVAK-GGLGLILKRMVE 222

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 88.1 bits (217), Expect = 2e-20
 Identities = 45/233 (19%), Positives = 91/233 (39%), Gaps = 19/233 (8%)

Query: 322 LHLAAEAGQLQ-VCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTA 380
           +   A +G+L+ + + +L   +    TD   +  +H A      E+ +  L+    +   
Sbjct: 7   VCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDK 66

Query: 381 TTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVL 440
                +     A+      V   L K  +   ++        TPL  AA      +  +L
Sbjct: 67  DDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGC----TPLHYAASKNRHEIAVML 122

Query: 441 VKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLGVTALHVAAYFGQA 500
           ++ GA+   ++    TA+H AA  G+ +++  +   KA        G T LH+A    + 
Sbjct: 123 LEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERV 182

Query: 501 DTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVRLLL 553
           +  + L+S            GAS    + ++   TPL +A   G   +++ ++
Sbjct: 183 EEAKLLVSQ-----------GASI--YIENKEEKTPLQVAKG-GLGLILKRMV 221

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 87.3 bits (215), Expect = 4e-20
 Identities = 56/230 (24%), Positives = 98/230 (42%), Gaps = 27/230 (11%)

Query: 43  AARVKDGDRCALMLLKSGAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKI 102
            A     +     +L   +    T  D +T +H A   G+   ++ LL+ G     K+  
Sbjct: 10  LAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDA 69

Query: 103 GETPLHLASRNCKAEVVDLLIQFVQNISQEKVLEYVNSVNEDGASALHYACQVTKAELIP 162
           G +PLH+A+   + E+V  L+              VN+VN++G + LHYA          
Sbjct: 70  GWSPLHIAASAGRDEIVKALLGKG---------AQVNAVNQNGCTPLHYAA--------- 111

Query: 163 ITSKEDQKTVKLLLEAGADVSLQTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKAL 222
             SK   +   +LLE GA+   +      TA H  A  GN  ++  +L          + 
Sbjct: 112 --SKNRHEIAVMLLEGGANPDAKDH-YEATAMHRAAAKGNLKMIHILLYYK------AST 162

Query: 223 NKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEH 272
           N Q + G TPL +AC+   +E    +++  A + + ++E ++ L +A   
Sbjct: 163 NIQDTEGNTPLHLACDEERVEEAKLLVSQGASIYIENKEEKTPLQVAKGG 212

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 80.0 bits (196), Expect = 1e-17
 Identities = 47/206 (22%), Positives = 76/206 (36%), Gaps = 28/206 (13%)

Query: 12  TPLHIAAR------VKDGDRCALMLLKSGAGPNLTNIAARVKDGDRCALMLLKSGAGPNL 65
           T LH A        V+   +  + +             A     D     LL  GA  N 
Sbjct: 39  TALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNA 98

Query: 66  TTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVVDLLIQF 125
              +G TP+H AA         +LLE G +P  K+    T +H A+     +++ +L+ +
Sbjct: 99  VNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYY 158

Query: 126 VQNISQEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGADVSLQ 185
                        N  + +G + LH AC            +E  +  KLL+  GA + ++
Sbjct: 159 KA---------STNIQDTEGNTPLHLACD-----------EERVEEAKLLVSQGASIYIE 198

Query: 186 TKQNHETAFHYCAVAGNNDVLTGMLE 211
            K   +T     A  G   +L  M+E
Sbjct: 199 NK-EEKTPLQV-AKGGLGLILKRMVE 222

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 76.5 bits (187), Expect = 2e-16
 Identities = 43/265 (16%), Positives = 83/265 (31%), Gaps = 51/265 (19%)

Query: 107 LHLASRNCKAEVVDLLIQFVQNISQEKVLEYVNSVNEDGASALHYACQVTKAELIPITSK 166
            +LA      E+ + ++                  ++D  +ALH+AC     E++    +
Sbjct: 8   CNLAYSGKLEELKESILADKSL---------ATRTDQDSRTALHWACSAGHTEIVEFLLQ 58

Query: 167 EDQKTVKLLLEAGADVSLQTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQT 226
                        + + +      +         G                    +N   
Sbjct: 59  LGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQ------------------VNAVN 100

Query: 227 SIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVSSGKSLKHS 286
             G TPL  A ++   E+   +L   A  D  D    +A+H                   
Sbjct: 101 QNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMH------------------- 141

Query: 287 VMSFRLPPHNIIPNGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDA 346
               R      +    ++  + A  +I      TPLHLA +  +++  KLL+  GASI  
Sbjct: 142 ----RAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGASIYI 197

Query: 347 TDDQGQKPIHVAAQNNFPEVAQIFL 371
            + + + P+ VA       + +  +
Sbjct: 198 ENKEEKTPLQVAK-GGLGLILKRMV 221

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.0 bits (170), Expect = 3e-14
 Identities = 52/213 (24%), Positives = 80/213 (37%), Gaps = 17/213 (7%)

Query: 355 IHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVIS 414
           +   A +   E  +  + A  SL T T +D  T  H A   G   ++E L++        
Sbjct: 7   VCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGV---PV 63

Query: 415 ARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMR 474
                   +PL +AA  G   +V+ L+  GA     N+ G T +H AA    +++   + 
Sbjct: 64  NDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLL 123

Query: 475 SSKALNVYSKKLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGM 534
              A          TA+H AA  G    +  LL +   T   D               G 
Sbjct: 124 EGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQD-------------TEGN 170

Query: 535 TPLHLAAYSGNENVVRLLLNSAGVQVDAQTQEN 567
           TPLHLA         +LL+ S G  +  + +E 
Sbjct: 171 TPLHLACDEERVEEAKLLV-SQGASIYIENKEE 202

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 94.0 bits (232), Expect = 6e-22
 Identities = 46/255 (18%), Positives = 88/255 (34%), Gaps = 6/255 (2%)

Query: 229 GWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVSSGKSLKHSVM 288
                L AC+ G  E V  +L   A ++  + +G +ALH A     + +        + +
Sbjct: 40  DGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANI 99

Query: 289 SFRLPPHNIIPNGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATD 348
           +       I  +      +  + + L  +      + +E            +   +    
Sbjct: 100 NQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEV 159

Query: 349 DQGQKPIHV---AAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIEELM 405
           ++    I       +      A+ +L +         K G T  H+AA +G   V++ L+
Sbjct: 160 NRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLI 219

Query: 406 KFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNG 465
           +      I   +  T   PL  AA  G     R+LV+        NK G TA  +A ++ 
Sbjct: 220 QARYDVNIKDYDGWT---PLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVADEDI 276

Query: 466 HNQVLEEMRSSKALN 480
              + E  +    L+
Sbjct: 277 LGYLEELQKKQNLLH 291

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 87.9 bits (216), Expect = 9e-20
 Identities = 55/294 (18%), Positives = 91/294 (30%), Gaps = 56/294 (19%)

Query: 69  DGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVVDLLIQFVQN 128
           D      AA   G+   +  LLE G D  Y N  G T LH A  +   ++V  L++   N
Sbjct: 39  DDGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGAN 98

Query: 129 ISQEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGADVSLQTKQ 188
           I                    +         L    S       + L+  GA V     +
Sbjct: 99  I--------------------NQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSE 138

Query: 189 NHETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIACNRGHMELVNTM 248
                                 E+     +   +N+Q                 +    +
Sbjct: 139 GDTPLDIAE-------------EEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWL 185

Query: 249 LNNHARVDVFDQEGRSALHLAAEHGYLKVSSGKSLKHSVMSFRLPPHNIIPNGFLVHDHA 308
            + H       + G +ALH+AA  GY +V                         L+    
Sbjct: 186 NSGHINDVRHAKSGGTALHVAAAKGYTEVL-----------------------KLLIQAR 222

Query: 309 AVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNN 362
             ++I      TPLH AA  G+ + C++L++    ++A +  GQ    VA ++ 
Sbjct: 223 YDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVADEDI 276

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 82.5 bits (202), Expect = 5e-18
 Identities = 41/257 (15%), Positives = 83/257 (32%), Gaps = 40/257 (15%)

Query: 320 TPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVT 379
                A  +G  +    LL+ GA I+  +  G   +H A  ++  ++ +  +    ++  
Sbjct: 42  AVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQ 101

Query: 380 ATTKDGNTCAHIAAMQGSVGV-----------------------IEELMKFDRSGVISAR 416
              +        A+                               EE    +       R
Sbjct: 102 PDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNR 161

Query: 417 NRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSS 476
             V      +        +  + L     +     K+G TA+H+AA  G+ +VL+ +  +
Sbjct: 162 QGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQA 221

Query: 477 KALNVYSKKLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTP 536
           +         G T LH AA++G+ +  R L+ +                 E  ++ G T 
Sbjct: 222 RYDVNIKDYDGWTPLHAAAHWGKEEACRILVEN-----------LCDM--EAVNKVGQTA 268

Query: 537 LHLAAYSGNENVVRLLL 553
             +A     E+++  L 
Sbjct: 269 FDVAD----EDILGYLE 281

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 82.1 bits (201), Expect = 7e-18
 Identities = 53/262 (20%), Positives = 98/262 (37%), Gaps = 27/262 (10%)

Query: 37  PNLTNIAARVKDGDRCALM-------------LLKSGAGPNLTTDDGQTPVHAAAKYGNL 83
           P +     +VK  D    +             LL+ GA  N    DG T +H A    N+
Sbjct: 27  PVVKRKKTKVKFDDGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNV 86

Query: 84  VTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVVDLLIQFVQNIS------QEKVLEY 137
             ++ L+E+G +    +  G  PLH A+     ++ + LI    ++          +   
Sbjct: 87  DMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIA 146

Query: 138 VNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGADVSLQTKQNHETAFHYC 197
                E+          V          +   +  +  L +G    ++  ++  TA H  
Sbjct: 147 EEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVA 206

Query: 198 AVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDV 257
           A  G  +VL  +++          +N +   GWTPL  A + G  E    ++ N   ++ 
Sbjct: 207 AAKGYTEVLKLLIQARY------DVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEA 260

Query: 258 FDQEGRSALHLAAE--HGYLKV 277
            ++ G++A  +A E   GYL+ 
Sbjct: 261 VNKVGQTAFDVADEDILGYLEE 282

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 65.1 bits (157), Expect = 3e-12
 Identities = 22/78 (28%), Positives = 41/78 (52%), Gaps = 2/78 (2%)

Query: 52  CALMLLKSGAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLAS 111
              +L+++    N+   DG TP+HAAA +G     ++L+E+  D    NK+G+T   +A 
Sbjct: 214 VLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVAD 273

Query: 112 RNCKAEVVDLLIQFVQNI 129
            +    + +L  +  QN+
Sbjct: 274 EDILGYLEELQKK--QNL 289

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 63.6 bits (153), Expect = 9e-12
 Identities = 31/154 (20%), Positives = 53/154 (34%), Gaps = 9/154 (5%)

Query: 15  HIAARVKDGDRCALMLLKSGAGPNLTNIAARVKDGDRCALMLLKSGAGPNLTTDDGQTPV 74
            IA      +     + + G                     L             G T +
Sbjct: 144 DIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTAL 203

Query: 75  HAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVVDLLIQFVQNISQEKV 134
           H AA  G    L+LL++   D   K+  G TPLH A+   K E   +L++ + ++     
Sbjct: 204 HVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDM----- 258

Query: 135 LEYVNSVNEDGASALHYACQVTKAELIPITSKED 168
                +VN+ G +A   A +     L  +  K++
Sbjct: 259 ----EAVNKVGQTAFDVADEDILGYLEELQKKQN 288

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 47.0 bits (110), Expect = 2e-06
 Identities = 12/60 (20%), Positives = 24/60 (40%)

Query: 414 SARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEM 473
             + +  +      A   G    V  L++ GA     N  G TA+H A  + +  +++ +
Sbjct: 33  KTKVKFDDGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFL 92

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 87.4 bits (215), Expect = 1e-19
 Identities = 48/311 (15%), Positives = 97/311 (31%), Gaps = 34/311 (10%)

Query: 54  LMLLKSGAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRN 113
           L ++K+   P +  ++ +  + A  +        L  E    P   N            +
Sbjct: 19  LKIMKALPSPVVNDNEQKMKLEAFLQR------LLFPEIQEMPTSLNNDSSNRNSEGGSS 72

Query: 114 CKAEVVDLLIQFVQNISQEKVLEYVN---SVNEDGASALHYACQVTKAELIPITSKEDQK 170
            + +        +Q ++       +N    V+E G + LH+   +   EL          
Sbjct: 73  NQQQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLEL---------- 122

Query: 171 TVKLLLEAGADVSLQTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGW 230
            VK L++ G++         E+       + NN         +    +   L  + S+  
Sbjct: 123 -VKHLVKHGSNRLYGDN-MGESCLVKAVKSVNNYDSGTFEALLD--YLYPCLILEDSMNR 178

Query: 231 TPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVSSGKSLKHSVMSF 290
           T L        M   +     +  +          +    +     + SG + K S  + 
Sbjct: 179 TILHHIIITSGMTGCSAAAKYYLDIL---------MGWIVKKQNRPIQSGTNEKESKPND 229

Query: 291 RLPPHNIIPNGFLVHDH--AAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATD 348
           +           L      A +++       T L++AA  G + +   LLD GA     +
Sbjct: 230 KNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIAN 289

Query: 349 DQGQKPIHVAA 359
             G +P+   A
Sbjct: 290 KSGLRPVDFGA 300

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 82.0 bits (201), Expect = 9e-18
 Identities = 43/301 (14%), Positives = 100/301 (33%), Gaps = 47/301 (15%)

Query: 163 ITSKEDQKTVKLLLEAGADVSLQTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKAL 222
           +   E Q+    L    ++ + +   +++   H    +   +V        +   ++  +
Sbjct: 46  LLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPN--TQLNLNIPV 103

Query: 223 NKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVSSGKS 282
           ++    G TPL    +  ++ELV  ++ + +     D  G S L  A +           
Sbjct: 104 DEH---GNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVN-------- 152

Query: 283 LKHSVMSFRLPPHNIIPNGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGA 342
                       ++      L+      + +     +T LH                   
Sbjct: 153 -----------NYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITS------------- 188

Query: 343 SIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIE 402
                   G      AA+     +    ++     + + T +  +  +    +    ++E
Sbjct: 189 --------GMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILE 240

Query: 403 EL-MKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLA 461
            L +K+  + +++A++     T L +AA  G+ ++V  L+  GA     NK+G   V   
Sbjct: 241 NLDLKWIIANMLNAQDS-NGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFG 299

Query: 462 A 462
           A
Sbjct: 300 A 300

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 77.4 bits (189), Expect = 3e-16
 Identities = 35/230 (15%), Positives = 68/230 (29%), Gaps = 44/230 (19%)

Query: 319 QTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSL- 377
            TPLH       L++ K L+  G++    D+ G+  +  A ++     +  F      L 
Sbjct: 108 NTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLY 167

Query: 378 --VTATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHAN 435
             +        T  H   +   +       K+                 +    +  +  
Sbjct: 168 PCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLD------------ILMGWIVKKQNRP 215

Query: 436 VVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEM----RSSKALNVYSKKLGVTAL 491
           +                   +  +       + +LE +      +  LN      G T L
Sbjct: 216 IQSG-----------TNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSN-GDTCL 263

Query: 492 HVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAA 541
           ++AA  G    V  LL +           GA     + ++SG+ P+   A
Sbjct: 264 NIAARLGNISIVDALLDY-----------GADP--FIANKSGLRPVDFGA 300

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 70.1 bits (170), Expect = 9e-14
 Identities = 33/260 (12%), Positives = 71/260 (27%), Gaps = 69/260 (26%)

Query: 12  TPLHIAARVKDGDRCALMLLKSGAGPNLTNIAARVKDGDRCALMLLKSGAGPNLTTDDGQ 71
           TPLH    + + +                               L+K G+      + G+
Sbjct: 109 TPLHWLTSIANLE---------------------------LVKHLVKHGSNRLYGDNMGE 141

Query: 72  TPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVVDLLIQFVQNISQ 131
           + +  A K                            +         ++D L         
Sbjct: 142 SCLVKAVKSV--------------------------NNYDSGTFEALLDYLYP------- 168

Query: 132 EKVLEYVNSVNEDGASALHYACQVTKAELIPITSKED-QKTVKLLLEAGADVSLQTKQNH 190
                 +   +    + LH+    +        +K      +  +++             
Sbjct: 169 -----CLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEK 223

Query: 191 ETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIACNRGHMELVNTMLN 250
           E+  +       + +L  +        I+  LN Q S G T L IA   G++ +V+ +L+
Sbjct: 224 ESKPNDKNGERKDSILENLDL---KWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLD 280

Query: 251 NHARVDVFDQEGRSALHLAA 270
             A   + ++ G   +   A
Sbjct: 281 YGADPFIANKSGLRPVDFGA 300

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 63.9 bits (154), Expect = 8e-12
 Identities = 32/285 (11%), Positives = 68/285 (23%), Gaps = 34/285 (11%)

Query: 285 HSVMSFRLPPHNIIPNGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASI 344
            + +   L P        L +D +          Q   H++ ++   +V     +   ++
Sbjct: 40  EAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNL 99

Query: 345 DA-TDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIEE 403
           +   D+ G  P+H        E+ +  ++ H S        G +C   A    +      
Sbjct: 100 NIPVDEHGNTPLHWLTSIANLELVKHLVK-HGSNRLYGDNMGESCLVKAVKSVNNYDSGT 158

Query: 404 LMKFDRSGVISARNR-VTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAA 462
                               T L                K               +    
Sbjct: 159 FEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDIL---------MGWIV 209

Query: 463 QNGHNQVLEEMRSSKALNVYSKKLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGA 522
           +  +                      +  +      +   +  L                
Sbjct: 210 KKQN-----------RPIQSGTNEKESKPNDKNGERKDSILENLDLKW----------II 248

Query: 523 SFLGELGSESGMTPLHLAAYSGNENVVRLLLNSAGVQVDAQTQEN 567
           + +      +G T L++AA  GN ++V  LL   G       +  
Sbjct: 249 ANMLNAQDSNGDTCLNIAARLGNISIVDALL-DYGADPFIANKSG 292

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 85.3 bits (209), Expect = 2e-19
 Identities = 47/237 (19%), Positives = 82/237 (34%), Gaps = 18/237 (7%)

Query: 319 QTPLHLAAEAGQLQVCKLLLDL----GASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAH 374
            TPLH+A   G L     L++L    G  +D  ++  Q P+H+A     P V ++ + A 
Sbjct: 4   DTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAG 63

Query: 375 PSLVTATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHA 434
            S +                +    +   L       +          T L +A      
Sbjct: 64  ASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQ 123

Query: 435 NVVRVLVKAGASCTDENKTGFTAV-HLAAQNGHNQVLEEMRSSKALNVYSKKLGVTALHV 493
             V++L++ GA     +     +    A +N    +++ +    A        G +ALH 
Sbjct: 124 ETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHS 183

Query: 494 AAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVR 550
           A+  G    VR L+             GA     L +    TPL +A      +++R
Sbjct: 184 ASGRGLLPLVRTLVRS-----------GADS--SLKNCHNDTPLMVARSRRVIDILR 227

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 83.4 bits (204), Expect = 8e-19
 Identities = 49/231 (21%), Positives = 86/231 (37%), Gaps = 27/231 (11%)

Query: 68  DDGQTPVHAAAKYGNLVTLQLLL----EDGGDPMYKNKIGETPLHLASRNC--KAEVVDL 121
           +DG TP+H A   GNL  +  L+    + G +    N + +TPLHLA          + +
Sbjct: 1   EDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLV 60

Query: 122 LIQFVQNISQEKVLEYVNSVNEDGASALHYACQVTKA---------------ELIPITSK 166
                            +   E  +     A   + A                L    + 
Sbjct: 61  TAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNT 120

Query: 167 EDQKTVKLLLEAGADVSLQTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQT 226
           E Q+TV+LLLE GAD+     ++  +     AV  N+  +  +L Q      ++  +   
Sbjct: 121 ECQETVQLLLERGADIDAVDIKSGRS-PLIHAVENNSLSMVQLLLQHGANVNAQMYS--- 176

Query: 227 SIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKV 277
             G + L  A  RG + LV T++ + A   + +    + L +A     + +
Sbjct: 177 --GSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDI 225

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 82.2 bits (201), Expect = 2e-18
 Identities = 46/246 (18%), Positives = 83/246 (33%), Gaps = 26/246 (10%)

Query: 229 GWTPLLIACNRGHME----LVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVSSGKSLK 284
           G TPL IA  +G++     LVN        +D+++   ++ LHLA               
Sbjct: 3   GDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPS-------V 55

Query: 285 HSVMSFRLPPHNIIPNGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASI 344
             ++         +        H A         +  L  AA        +         
Sbjct: 56  VRLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEAR--------- 106

Query: 345 DATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIEEL 404
              +  G   +HVA      E  Q+ L     +     K G +    A    S+ +++ L
Sbjct: 107 ---NYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLL 163

Query: 405 MKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQN 464
           ++    G        + ++ L  A+  G   +VR LV++GA  + +N    T + +A   
Sbjct: 164 LQH---GANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSR 220

Query: 465 GHNQVL 470
               +L
Sbjct: 221 RVIDIL 226

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 78.0 bits (190), Expect = 6e-17
 Identities = 46/267 (17%), Positives = 80/267 (29%), Gaps = 43/267 (16%)

Query: 103 GETPLHLASRNCKAEVVDLLIQFVQNISQEKVLEYVNSVNEDGASALHYACQVTKAELIP 162
           G+TPLH+A        V  L+   Q   +E     ++  N    + LH A   T   ++ 
Sbjct: 3   GDTPLHIAVVQGNLPAVHRLVNLFQQGGRE-----LDIYNNLRQTPLHLAVITTLPSVVR 57

Query: 163 ITSKEDQKTVKLLLEAGADVSLQTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKAL 222
           +                         +            +           S    +  L
Sbjct: 58  LLVTAGAS--------------PMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDL 103

Query: 223 NKQTSIGWTPLLIACNRGHMELVNTMLNNHA-RVDVFDQEGRSALHLAAEHGYLKVSSGK 281
             +   G T L +A N    E V  +L   A    V  + GRS L  A E+  L +    
Sbjct: 104 EARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSM---- 159

Query: 282 SLKHSVMSFRLPPHNIIPNGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLG 341
                ++      +  + +G                  + LH A+  G L + + L+  G
Sbjct: 160 --VQLLLQHGANVNAQMYSG-----------------SSALHSASGRGLLPLVRTLVRSG 200

Query: 342 ASIDATDDQGQKPIHVAAQNNFPEVAQ 368
           A     +     P+ VA      ++ +
Sbjct: 201 ADSSLKNCHNDTPLMVARSRRVIDILR 227

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.5 bits (129), Expect = 7e-09
 Identities = 19/65 (29%), Positives = 33/65 (50%)

Query: 55  MLLKSGAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNC 114
           +LL+ GA  N     G + +H+A+  G L  ++ L+  G D   KN   +TPL +A    
Sbjct: 162 LLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRR 221

Query: 115 KAEVV 119
             +++
Sbjct: 222 VIDIL 226

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.0 bits (107), Expect = 4e-06
 Identities = 61/211 (28%), Positives = 86/211 (40%), Gaps = 29/211 (13%)

Query: 384 DGNTCAHIAAMQGSVGVIEELMK-FDRSGV-ISARNRVTEATPLQLAAEGGHANVVRVLV 441
           DG+T  HIA +QG++  +  L+  F + G  +   N     TPL LA      +VVR+LV
Sbjct: 2   DGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNN-LRQTPLHLAVITTLPSVVRLLV 60

Query: 442 KAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKA----LNVYSKKLGVTALHVAAYF 497
            AGAS    ++ G TA HLA ++     L  +  S A            G+TALHVA   
Sbjct: 61  TAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNT 120

Query: 498 GQADTVRELLSHVPGTVKSDPPTGASFL---------------------GELGSESGMTP 536
              +TV+ LL         D  +G S L                           SG + 
Sbjct: 121 ECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSA 180

Query: 537 LHLAAYSGNENVVRLLLNSAGVQVDAQTQEN 567
           LH A+  G   +VR L+  +G     +   N
Sbjct: 181 LHSASGRGLLPLVRTLV-RSGADSSLKNCHN 210

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.3 bits (100), Expect = 3e-05
 Identities = 14/40 (35%), Positives = 18/40 (45%), Gaps = 3/40 (7%)

Query: 531 ESGMTPLHLAAYSGNENVVRLLLN---SAGVQVDAQTQEN 567
           E G TPLH+A   GN   V  L+N     G ++D      
Sbjct: 1   EDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLR 40

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.4 bits (90), Expect = 5e-04
 Identities = 8/32 (25%), Positives = 13/32 (40%)

Query: 52  CALMLLKSGAGPNLTTDDGQTPVHAAAKYGNL 83
               L++SGA  +L      TP+  A     +
Sbjct: 192 LVRTLVRSGADSSLKNCHNDTPLMVARSRRVI 223

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 81.4 bits (199), Expect = 4e-18
 Identities = 48/238 (20%), Positives = 77/238 (32%), Gaps = 18/238 (7%)

Query: 320 TPLHLAAEAGQLQVCKLLLDL-GASIDATDDQGQKPIHVAAQNNFPEVAQIFLRA-HPSL 377
            PLH A    +    + LL    + +   D  G+ P+H +      E+    L       
Sbjct: 2   YPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVN 61

Query: 378 VTATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVV 437
           +     D        A       + + +          +      T L LA       V 
Sbjct: 62  LDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVS 121

Query: 438 RVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSK-KLGVTALHVAAY 496
           + L++ GAS   ++K     +H AA  G  +++E +       V  + K G T L  A  
Sbjct: 122 QFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALA 181

Query: 497 FGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVRLLLN 554
            G  D    L+             GA +  +L    G     +A    NE V +  LN
Sbjct: 182 EGHGDAAVLLVEKY----------GAEY--DLVDNKGAKAEDVAL---NEQVKKFFLN 224

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 77.2 bits (188), Expect = 1e-16
 Identities = 43/232 (18%), Positives = 78/232 (33%), Gaps = 23/232 (9%)

Query: 231 TPLLIACNRGHMELVNTMLNNH-ARVDVFDQEGRSALHLAAEHGYLKVSSG--------- 280
            PL  AC       V  +L++  + +   DQ+GR  LH +      +++S          
Sbjct: 2   YPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVN 61

Query: 281 ------KSLKHSVMSFRLPPHNIIPNGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVC 334
                  S            +  +            ++ +T +  T LHLA      +V 
Sbjct: 62  LDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVS 121

Query: 335 KLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAM 394
           + L++ GAS+   D   Q P+H AA     ++ ++      S V    K G T    A  
Sbjct: 122 QFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALA 181

Query: 395 QGSVGVIEELMKFDRSGV-ISARNRVTEATPLQLAAEGGHANVVRVLVKAGA 445
           +G       L+  ++ G      +    A    +A    +  V +  +    
Sbjct: 182 EGHGDAAVLLV--EKYGAEYDLVDN-KGAKAEDVAL---NEQVKKFFLNNVV 227

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 67.5 bits (163), Expect = 2e-13
 Identities = 44/225 (19%), Positives = 70/225 (31%), Gaps = 26/225 (11%)

Query: 72  TPVHAAAKYGNLVTLQLLLEDGG-DPMYKNKIGETPLHLASRN----------------- 113
            P+H A        +Q LL       + K++ G  PLH +                    
Sbjct: 2   YPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVN 61

Query: 114 -CKAEVVDLLIQFVQNISQEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQKTV 172
                       F    S   +    +  +      L+         L     K+  +  
Sbjct: 62  LDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVS 121

Query: 173 KLLLEAGADVSLQTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTP 232
           + L+E GA V ++ K N +   H  A      +    L    G      +N Q   GWTP
Sbjct: 122 QFLIENGASVRIKDKFN-QIPLHRAAS--VGSLKLIELLCGLGKSA---VNWQDKQGWTP 175

Query: 233 LLIACNRGHMELVNTMLNNH-ARVDVFDQEGRSALHLAAEHGYLK 276
           L  A   GH +    ++  + A  D+ D +G  A  +A      K
Sbjct: 176 LFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALNEQVKK 220

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 65.6 bits (158), Expect = 1e-12
 Identities = 52/268 (19%), Positives = 88/268 (32%), Gaps = 47/268 (17%)

Query: 105 TPLHLASRNCKAEVVDLLIQFVQNISQEKVLEYVNSVNEDGASALHYACQVTKAELIPIT 164
            PLH A    +   V  L+              +   ++DG   LH++            
Sbjct: 2   YPLHQACMENEFFKVQELL--------HSKPSLLLQKDQDGRIPLHWSVS---------- 43

Query: 165 SKEDQKTVKLLLEAGADVSLQTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNK 224
             +  +    LL    +V+L    +      +       ++           +     NK
Sbjct: 44  -FQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDL--NK 100

Query: 225 QTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVSSGKSLK 284
            T+ G T L +A  +   E+   ++ N A V + D+  +  LH AA  G LK+       
Sbjct: 101 ITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKL------- 153

Query: 285 HSVMSFRLPPHNIIPNGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLD-LGAS 343
                             L     + ++    +  TPL  A   G      LL++  GA 
Sbjct: 154 ---------------IELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAE 198

Query: 344 IDATDDQGQKPIHVAAQNNFPEVAQIFL 371
            D  D++G K   VA      +V + FL
Sbjct: 199 YDLVDNKGAKAEDVALNE---QVKKFFL 223

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 63.3 bits (152), Expect = 7e-12
 Identities = 30/218 (13%), Positives = 64/218 (29%), Gaps = 21/218 (9%)

Query: 192 TAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIACNRGHMELVNTMLNN 251
              H   +      +  +L     + +     ++   G  PL  + +    E+ + +L+ 
Sbjct: 2   YPLHQACMENEFFKVQELLHS-KPSLL----LQKDQDGRIPLHWSVSFQAHEITSFLLSK 56

Query: 252 ---------------HARVDVFDQEGRSALHLAAEHGYLKVSSGKSLKHSVMSFRLPPHN 296
                                        +    +       +  + +            
Sbjct: 57  MENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKK 116

Query: 297 IIPNGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGAS-IDATDDQGQKPI 355
                  + ++ A + I     Q PLH AA  G L++ +LL  LG S ++  D QG  P+
Sbjct: 117 WFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPL 176

Query: 356 HVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAA 393
             A      + A + +  + +        G     +A 
Sbjct: 177 FHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVAL 214

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 52.1 bits (123), Expect = 3e-08
 Identities = 31/131 (23%), Positives = 49/131 (37%), Gaps = 23/131 (17%)

Query: 52  CALMLLKSGAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDP-MYKNKIGETPLHLA 110
            +  L+++GA   +     Q P+H AA  G+L  ++LL   G     +++K G TPL  A
Sbjct: 120 VSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHA 179

Query: 111 SRNCKAEVVDLLIQFVQNISQEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQK 170
                 +   LL+        EK     + V+  GA A   A                ++
Sbjct: 180 LAEGHGDAAVLLV--------EKYGAEYDLVDNKGAKAEDVALN--------------EQ 217

Query: 171 TVKLLLEAGAD 181
             K  L    D
Sbjct: 218 VKKFFLNNVVD 228

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.2 bits (92), Expect = 3e-04
 Identities = 9/32 (28%), Positives = 14/32 (43%)

Query: 535 TPLHLAAYSGNENVVRLLLNSAGVQVDAQTQE 566
            PLH A        V+ LL+S    +  + Q+
Sbjct: 2   YPLHQACMENEFFKVQELLHSKPSLLLQKDQD 33

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.8 bits (91), Expect = 4e-04
 Identities = 29/208 (13%), Positives = 57/208 (27%), Gaps = 28/208 (13%)

Query: 386 NTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGA 445
           N   H A M+     ++EL+   +  ++  +++     PL  +       +   L+    
Sbjct: 1   NYPLHQACMENEFFKVQELLH-SKPSLLLQKDQ-DGRIPLHWSVSFQAHEITSFLLSKME 58

Query: 446 SCTDENKTGFTAVHLAAQNGHN-----QVLEEMRSSKALNVYSKKLGVTALHVAAYFGQA 500
           +   ++    +                      R  K         GVT LH+A      
Sbjct: 59  NVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWF 118

Query: 501 DTVRELLSHVPGTVKSD---------------------PPTGASFLGELGSESGMTPLHL 539
           +  + L+ +       D                                  + G TPL  
Sbjct: 119 EVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFH 178

Query: 540 AAYSGNENVVRLLLNSAGVQVDAQTQEN 567
           A   G+ +   LL+   G + D    + 
Sbjct: 179 ALAEGHGDAAVLLVEKYGAEYDLVDNKG 206

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.1 bits (84), Expect = 0.003
 Identities = 13/64 (20%), Positives = 20/64 (31%), Gaps = 3/64 (4%)

Query: 32  KSGAGPNLTNIAARVKDGDRCALMLLKSGAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLE 91
           +   G      A     GD   L++ K GA  +L  + G      A         +  L 
Sbjct: 168 QDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALNEQ---VKKFFLN 224

Query: 92  DGGD 95
           +  D
Sbjct: 225 NVVD 228

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 76.1 bits (185), Expect = 3e-16
 Identities = 35/213 (16%), Positives = 72/213 (33%), Gaps = 24/213 (11%)

Query: 69  DGQTPVHAAAKYGNLVT----LQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVVDLLIQ 124
           DG + +H A  +         ++ +  D     ++N + +TPLHLA    + E+ + L+ 
Sbjct: 1   DGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLG 60

Query: 125 FVQNISQEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGADVSL 184
              +                    L     +T++   P      +               
Sbjct: 61  AGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILK--------------- 105

Query: 185 QTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIACNRGHMEL 244
            T  N  T  H  ++ G   ++  ++   +     +  N     G T L +A +  + +L
Sbjct: 106 ATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCN-----GRTALHLAVDLQNPDL 160

Query: 245 VNTMLNNHARVDVFDQEGRSALHLAAEHGYLKV 277
           V+ +L   A V+    +G S   L       ++
Sbjct: 161 VSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRI 193

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.9 bits (169), Expect = 3e-14
 Identities = 39/198 (19%), Positives = 69/198 (34%), Gaps = 7/198 (3%)

Query: 319 QTPLHLAAEAGQLQVCKLLLDL----GASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAH 374
            + LHLA    +  +   ++       A ++  ++  Q P+H+A   N PE+A+  L A 
Sbjct: 3   DSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAG 62

Query: 375 PSLVTATTKDGNTCAHIAAMQ--GSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGG 432
                   +               SVGV+ +         I         T L LA+  G
Sbjct: 63  CDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHG 122

Query: 433 HANVVRVLVKAGASCTDENKT-GFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLGVTAL 491
           +  +V +LV  GA    +    G TA+HLA    +  ++  +    A        G +  
Sbjct: 123 YLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPY 182

Query: 492 HVAAYFGQADTVRELLSH 509
            +          ++L   
Sbjct: 183 QLTWGRPSTRIQQQLGQL 200

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.1 bits (154), Expect = 3e-12
 Identities = 39/252 (15%), Positives = 76/252 (30%), Gaps = 41/252 (16%)

Query: 103 GETPLHLASRNCKAEVVDLLIQFVQNISQEKVLEYVNSVNEDGASALHYACQVTKAELIP 162
           G++ LHLA  + +  +   +I+ V+          +N  N    + LH A    + E+  
Sbjct: 2   GDSFLHLAIIHEEKALTMEVIRQVKGDLAF-----LNFQNNLQQTPLHLAVITNQPEIAE 56

Query: 163 ITSKEDQKTVKLLLEAGADVSLQTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKAL 222
                                        T  H     G    +  + +  +   +   L
Sbjct: 57  ALLGAGCDPE------------LRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSIL 104

Query: 223 NKQTSIGWTPLLIACNRGHMELVNTMLNNHARV-DVFDQEGRSALHLAAEHGYLKVSSGK 281
                 G T L +A   G++ +V  +++  A V       GR+ALHLA +          
Sbjct: 105 KATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPD----- 159

Query: 282 SLKHSVMSFRLPPHNIIPNGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLG 341
                                L+    A ++ +T +  +P  L       ++ + L  L 
Sbjct: 160 ------------------LVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLT 201

Query: 342 ASIDATDDQGQK 353
                   + + 
Sbjct: 202 LENLQMLPESED 213

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.0 bits (151), Expect = 8e-12
 Identities = 39/230 (16%), Positives = 71/230 (30%), Gaps = 30/230 (13%)

Query: 144 DGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGADVSLQTKQNHETAFHYCAVAGNN 203
           DG S LH A    +  L         + ++ +    A ++ Q     +T  H   +    
Sbjct: 1   DGDSFLHLAIIHEEKALT-------MEVIRQVKGDLAFLNFQNN-LQQTPLHLAVITNQP 52

Query: 204 DVLTGMLEQMSGTEISKALNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGR 263
           ++   +L      E+                   + G +    T  + H+ +   +  G 
Sbjct: 53  EIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGH 112

Query: 264 SALHLAAEHGYLKVSSGKSLKHSVMSFRLPPHNIIPNGFLVHDHAAVIDILTLRKQTPLH 323
           + LHLA+ HG           +  +   L       N     +            +T LH
Sbjct: 113 TCLHLASIHG-----------YLGIVELLVSLGADVNAQEPCNG-----------RTALH 150

Query: 324 LAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRA 373
           LA +     +  LLL  GA ++    QG  P  +        + Q   + 
Sbjct: 151 LAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQL 200

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.6 bits (150), Expect = 1e-11
 Identities = 32/228 (14%), Positives = 72/228 (31%), Gaps = 24/228 (10%)

Query: 229 GWTPLLIACNRGH----MELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVSSGKSLK 284
           G + L +A         ME++  +  + A ++  +   ++ LHLA      +++      
Sbjct: 2   GDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGA 61

Query: 285 HSVMSFRLPPHNIIPNGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASI 344
                 R    N   +        A + +LT    TP                    + +
Sbjct: 62  GCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHL-----------------HSIL 104

Query: 345 DATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIEEL 404
            AT+  G   +H+A+ + +  + ++ +     +      +G T  H+A    +    + +
Sbjct: 105 KATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQN---PDLV 161

Query: 405 MKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENK 452
               + G    R      +P QL        + + L +          
Sbjct: 162 SLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLP 209

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.8 bits (135), Expect = 8e-10
 Identities = 40/224 (17%), Positives = 77/224 (34%), Gaps = 22/224 (9%)

Query: 261 EGRSALHLAAEHGYLKVSSGKSLKHSVMSFRLPPHNIIPNGFLVHDHAAVIDILTLRKQT 320
           +G S LHLA  H    ++                  +I     V    A ++     +QT
Sbjct: 1   DGDSFLHLAIIHEEKALT----------------MEVIR---QVKGDLAFLNFQNNLQQT 41

Query: 321 PLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTA 380
           PLHLA    Q ++ + LL  G   +  D +G  P+H+A +        +  ++  +    
Sbjct: 42  PLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLH 101

Query: 381 TTKDGNTCAHIAAMQ--GSVGVIEELMKFDRSGVISARNRVTE-ATPLQLAAEGGHANVV 437
           +            +      G +  +      G            T L LA +  + ++V
Sbjct: 102 SILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLV 161

Query: 438 RVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNV 481
            +L+K GA        G++   L       ++ +++      N+
Sbjct: 162 SLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENL 205

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.6 bits (124), Expect = 3e-08
 Identities = 47/243 (19%), Positives = 87/243 (35%), Gaps = 43/243 (17%)

Query: 11  ETPLHIAARVKDGDRCALMLLKSGAGPNLTNIAARVKDGDRCALMLLKSGAGPNLTTDDG 70
           ++ LH+A   ++     + +++                       +    A  N   +  
Sbjct: 3   DSFLHLAIIHEEKA-LTMEVIR----------------------QVKGDLAFLNFQNNLQ 39

Query: 71  QTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVVDLLIQFVQNIS 130
           QTP+H A         + LL  G DP  ++  G TPLH     C+   +  +    Q+ +
Sbjct: 40  QTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLH---LACEQGCLASVGVLTQSCT 96

Query: 131 QEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGADVSLQTKQNH 190
              +   + + N +G + LH A                   V+LL+  GADV+ Q   N 
Sbjct: 97  TPHLHSILKATNYNGHTCLHLASI-----------HGYLGIVELLVSLGADVNAQEPCNG 145

Query: 191 ETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIACNRGHMELVNTMLN 250
            TA H      N D+++ +L+  +        N+ T  G++P  +   R    +   +  
Sbjct: 146 RTALHLAVDLQNPDLVSLLLKCGADV------NRVTYQGYSPYQLTWGRPSTRIQQQLGQ 199

Query: 251 NHA 253
              
Sbjct: 200 LTL 202

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.7 bits (114), Expect = 4e-07
 Identities = 20/105 (19%), Positives = 37/105 (35%), Gaps = 4/105 (3%)

Query: 41  NIAARVKDGDRCALMLLKSGAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKN 100
           ++A+         L++            +G+T +H A    N   + LLL+ G D     
Sbjct: 116 HLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVT 175

Query: 101 KIGETPLHLASRNCKAEVVDLLIQFVQNISQEKVLEYVNSVNEDG 145
             G +P  L        +   L Q    ++ E +     S +E+ 
Sbjct: 176 YQGYSPYQLTWGRPSTRIQQQLGQ----LTLENLQMLPESEDEES 216

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.4 bits (113), Expect = 6e-07
 Identities = 39/213 (18%), Positives = 68/213 (31%), Gaps = 56/213 (26%)

Query: 384 DGNTCAHIAAMQGSVGVIEELMKF--DRSGVISARNRVTEATPLQLAAEGGHANVVRVLV 441
           DG++  H+A +     +  E+++        ++ +N   + TPL LA       +   L+
Sbjct: 1   DGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNN-LQQTPLHLAVITNQPEIAEALL 59

Query: 442 KAGASCTDENKTGF---------------------------------------TAVHLAA 462
            AG      +  G                                        T +HLA+
Sbjct: 60  GAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLAS 119

Query: 463 QNGHNQVLEEMRSSKALNVYSKKL-GVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTG 521
            +G+  ++E + S  A     +   G TALH+A      D V  LL             G
Sbjct: 120 IHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKC-----------G 168

Query: 522 ASFLGELGSESGMTPLHLAAYSGNENVVRLLLN 554
           A       +  G +P  L     +  + + L  
Sbjct: 169 ADV--NRVTYQGYSPYQLTWGRPSTRIQQQLGQ 199

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 72.1 bits (175), Expect = 4e-15
 Identities = 34/205 (16%), Positives = 65/205 (31%), Gaps = 5/205 (2%)

Query: 170 KTVKLLLEAGADVSLQTKQNHETAFHYCAVAGNNDVL-----TGMLEQMSGTEISKALNK 224
           + +  LL  GA+++    +  ET+ H  A     D        G             L+ 
Sbjct: 3   QVISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHA 62

Query: 225 QTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVSSGKSLK 284
             +     +     R     +N  +++     +          +          +     
Sbjct: 63  AVAADAMGVFQILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLITADADINAADNS 122

Query: 285 HSVMSFRLPPHNIIPNGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASI 344
                      N      ++  H A  D    + +TPL LAA  G  +  K LLD  A+ 
Sbjct: 123 GKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPLFLAAREGSYEASKALLDNFANR 182

Query: 345 DATDDQGQKPIHVAAQNNFPEVAQI 369
           + TD   + P  VA++    ++ ++
Sbjct: 183 EITDHMDRLPRDVASERLHHDIVRL 207

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 72.1 bits (175), Expect = 5e-15
 Identities = 45/222 (20%), Positives = 76/222 (34%), Gaps = 17/222 (7%)

Query: 332 QVCKLLLDLGASIDAT-DDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAH 390
           QV   LL  GA ++AT D  G+  +H+AA+    + A+  L A     +           
Sbjct: 3   QVISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHA 62

Query: 391 IAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDE 450
             A          L     +      +  T               +V  L+ A A     
Sbjct: 63  AVAADAMGVFQILLRNRATNLNARMHDGTTPLILAA---RLAIEGMVEDLITADADINAA 119

Query: 451 NKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLGVTALHVAAYFGQADTVRELLSHV 510
           + +G TA+H AA   + + +  +    A          T L +AA  G  +  + LL + 
Sbjct: 120 DNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPLFLAAREGSYEASKALLDN- 178

Query: 511 PGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVRLL 552
                      A+   E+       P  +A+   + ++VRLL
Sbjct: 179 ----------FANR--EITDHMDRLPRDVASERLHHDIVRLL 208

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 71.7 bits (174), Expect = 6e-15
 Identities = 43/207 (20%), Positives = 77/207 (37%), Gaps = 22/207 (10%)

Query: 86  LQLLLEDGGDPMYK-NKIGETPLHLASRNCKAEVVDLLIQFVQNISQEKVLEYVNSVNED 144
           +  LL  G +     +K GET LHLA+R  +A+    L+    + + +            
Sbjct: 5   ISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHAAV 64

Query: 145 --------------GASALHYACQVTKAELIPITSKEDQKTVKLLLEAGADVSLQTKQNH 190
                          A+ L+         LI       +  V+ L+ A AD++     + 
Sbjct: 65  AADAMGVFQILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLITADADINAADN-SG 123

Query: 191 ETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIACNRGHMELVNTMLN 250
           +TA H+ A   N + +  +L   +        + Q     TPL +A   G  E    +L+
Sbjct: 124 KTALHWAAAVNNTEAVNILLMHHANR------DAQDDKDETPLFLAAREGSYEASKALLD 177

Query: 251 NHARVDVFDQEGRSALHLAAEHGYLKV 277
           N A  ++ D   R    +A+E  +  +
Sbjct: 178 NFANREITDHMDRLPRDVASERLHHDI 204

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 67.1 bits (162), Expect = 2e-13
 Identities = 36/230 (15%), Positives = 70/230 (30%), Gaps = 27/230 (11%)

Query: 243 ELVNTMLNNHARVDV-FDQEGRSALHLAAEHGYLKVSSGKSLKHSVMSFRLPPHNIIPNG 301
           ++++ +L   A ++   D+ G ++LHLAA       +  K L  +        +      
Sbjct: 3   QVISDLLAQGAELNATMDKTGETSLHLAARFARADAA--KRLLDAGADANSQDNTGRTPL 60

Query: 302 FLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQN 361
                                        + V ++LL   A+             + A  
Sbjct: 61  HAAVAA---------------------DAMGVFQILLRNRATNLNARMHDGTTPLILAAR 99

Query: 362 NFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTE 421
              E     L    + + A    G T  H AA   +   +  L+    +         T 
Sbjct: 100 LAIEGMVEDLITADADINAADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDET- 158

Query: 422 ATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLE 471
             PL LAA  G     + L+   A+    +        +A++  H+ ++ 
Sbjct: 159 --PLFLAAREGSYEASKALLDNFANREITDHMDRLPRDVASERLHHDIVR 206

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 49.0 bits (115), Expect = 3e-07
 Identities = 14/60 (23%), Positives = 28/60 (46%)

Query: 63  PNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVVDLL 122
            +   D  +TP+  AA+ G+    + LL++  +    + +   P  +AS     ++V LL
Sbjct: 149 RDAQDDKDETPLFLAAREGSYEASKALLDNFANREITDHMDRLPRDVASERLHHDIVRLL 208

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 45.9 bits (107), Expect = 4e-06
 Identities = 22/100 (22%), Positives = 36/100 (36%), Gaps = 9/100 (9%)

Query: 55  MLLKSGAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNC 114
            L+ + A  N   + G+T +H AA   N   + +LL    +   ++   ETPL LA+R  
Sbjct: 108 DLITADADINAADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPLFLAAREG 167

Query: 115 KAEVVDLLIQFVQNISQEKVLEYVNSVNEDGASALHYACQ 154
             E    L+    N             +         A +
Sbjct: 168 SYEASKALLDNFANR---------EITDHMDRLPRDVASE 198

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 43.6 bits (101), Expect = 2e-05
 Identities = 8/38 (21%), Positives = 17/38 (44%)

Query: 52  CALMLLKSGAGPNLTTDDGQTPVHAAAKYGNLVTLQLL 89
            +  LL + A   +T    + P   A++  +   ++LL
Sbjct: 171 ASKALLDNFANREITDHMDRLPRDVASERLHHDIVRLL 208

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 43.2 bits (100), Expect = 3e-05
 Identities = 39/208 (18%), Positives = 71/208 (34%), Gaps = 29/208 (13%)

Query: 11  ETPLHIAARVKDGD-------RCALMLLKSGAGPNLTNIAARVKDGDRCALMLLKSGAGP 63
           ET LH+AAR    D         A    +   G    + A          ++L       
Sbjct: 24  ETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHAAVAADAMGVFQILLRNRATNL 83

Query: 64  NLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVVDLLI 123
           N    DG TP+  AA+      ++ L+    D    +  G+T LH A+     E V++L+
Sbjct: 84  NARMHDGTTPLILAARLAIEGMVEDLITADADINAADNSGKTALHWAAAVNNTEAVNILL 143

Query: 124 QFVQNISQEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGADVS 183
               N          ++ ++   + L  A +    E             K LL+  A+  
Sbjct: 144 MHHANR---------DAQDDKDETPLFLAAREGSYE-----------ASKALLDNFANRE 183

Query: 184 LQTKQNHETAFHYCAVAGNNDVLTGMLE 211
           +             +   ++D++  +L+
Sbjct: 184 ITDH-MDRLPRDVASERLHHDIVR-LLD 209

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 59.1 bits (141), Expect = 4e-11
 Identities = 29/152 (19%), Positives = 48/152 (31%), Gaps = 5/152 (3%)

Query: 320 TPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVT 379
             L  AA AGQ    ++L+  GA               A   +F     +          
Sbjct: 4   KKLLEAARAGQDDEVRILMANGAPFTTDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDAR 63

Query: 380 ATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRV 439
                       +    ++          + G       + + T L  A E  H  VV +
Sbjct: 64  TKVDRTPLHMAASEGHANIV-----EVLLKHGADVNAKDMLKMTALHWATEHNHQEVVEL 118

Query: 440 LVKAGASCTDENKTGFTAVHLAAQNGHNQVLE 471
           L+K GA    ++K   TA  ++  NG+  + E
Sbjct: 119 LIKYGADVHTQSKFCKTAFDISIDNGNEDLAE 150

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 53.3 bits (126), Expect = 4e-09
 Identities = 24/148 (16%), Positives = 43/148 (29%), Gaps = 9/148 (6%)

Query: 231 TPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVSSGKSLKHSVMSF 290
             LL A   G  + V  ++ N A               A    +           S  + 
Sbjct: 4   KKLLEAARAGQDDEVRILMANGAPFTTDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDAR 63

Query: 291 RLPPHNIIPNGFLVHDHA---------AVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLG 341
                  +                   A ++   + K T LH A E    +V +LL+  G
Sbjct: 64  TKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYG 123

Query: 342 ASIDATDDQGQKPIHVAAQNNFPEVAQI 369
           A +       +    ++  N   ++A+I
Sbjct: 124 ADVHTQSKFCKTAFDISIDNGNEDLAEI 151

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 47.9 bits (112), Expect = 3e-07
 Identities = 17/159 (10%), Positives = 37/159 (23%), Gaps = 36/159 (22%)

Query: 144 DGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGADVSLQTKQNHETAFHYCAVAGNN 203
           D    L  A +                 V++L+  GA  +                  + 
Sbjct: 1   DLGKKLLEAAR-----------AGQDDEVRILMANGAPFTTDWLGTSPLHLAAQYGHFST 49

Query: 204 DVLTGMLEQMSGTEISKALN-------------------------KQTSIGWTPLLIACN 238
             +                                           +  +  T L  A  
Sbjct: 50  TEVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATE 109

Query: 239 RGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKV 277
             H E+V  ++   A V    +  ++A  ++ ++G   +
Sbjct: 110 HNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDL 148

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 46.4 bits (108), Expect = 1e-06
 Identities = 32/152 (21%), Positives = 51/152 (33%), Gaps = 25/152 (16%)

Query: 423 TPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVY 482
             L  AA  G  + VR+L+  GA     +  G + +HLAAQ GH    E +  +      
Sbjct: 4   KKLLEAARAGQDDEVRILMANGAPF-TTDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDA 62

Query: 483 SKKLGVTALHVA----------------------AYFGQADTVRELLSHVPGTVKSDPPT 520
             K+  T LH+A                                    +    V+     
Sbjct: 63  RTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKY 122

Query: 521 GASFLGELGSESGMTPLHLAAYSGNENVVRLL 552
           GA       S+   T   ++  +GNE++  +L
Sbjct: 123 GADV--HTQSKFCKTAFDISIDNGNEDLAEIL 152

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 43.3 bits (100), Expect = 1e-05
 Identities = 14/63 (22%), Positives = 31/63 (49%)

Query: 60  GAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVV 119
           GA  N       T +H A ++ +   ++LL++ G D   ++K  +T   ++  N   ++ 
Sbjct: 90  GADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLA 149

Query: 120 DLL 122
           ++L
Sbjct: 150 EIL 152

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 41.8 bits (96), Expect = 5e-05
 Identities = 30/178 (16%), Positives = 63/178 (35%), Gaps = 28/178 (15%)

Query: 69  DGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVVDLLIQFVQN 128
           D    +  AA+ G    +++L+ + G P   + +G +PLHLA++       ++L++   +
Sbjct: 1   DLGKKLLEAARAGQDDEVRILMAN-GAPFTTDWLGTSPLHLAAQYGHFSTTEVLLRAGVS 59

Query: 129 ISQEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGADVSLQTKQ 188
                                    +V +  L    S+     V++LL+ GADV+ +   
Sbjct: 60  R--------------------DARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDML 99

Query: 189 NHETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIACNRGHMELVN 246
                           V   +            ++ Q+    T   I+ + G+ +L  
Sbjct: 100 KMTALHWATEHNHQEVVELLIKYGAD-------VHTQSKFCKTAFDISIDNGNEDLAE 150

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 39.5 bits (90), Expect = 3e-04
 Identities = 35/149 (23%), Positives = 65/149 (43%), Gaps = 16/149 (10%)

Query: 12  TPLHIAARVKDGDRCALMLLKSGAGPNLTNI------AARVKDGDRCALMLLKSGAGPNL 65
             L  AAR    D    +L+ +GA      +       A          +LL++G   + 
Sbjct: 4   KKLLEAARAGQDD-EVRILMANGAPFTTDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDA 62

Query: 66  TTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVVDLLIQF 125
            T   +TP+H AA  G+   +++LL+ G D   K+ +  T LH A+ +   EVV+LLI++
Sbjct: 63  RTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKY 122

Query: 126 VQNISQEKVLEYVNSVNEDGASALHYACQ 154
             ++         ++ ++   +A   +  
Sbjct: 123 GADV---------HTQSKFCKTAFDISID 142

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.6 bits (137), Expect = 1e-10
 Identities = 31/152 (20%), Positives = 54/152 (35%), Gaps = 4/152 (2%)

Query: 320 TPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVT 379
             L  AA  G L+    LL    +++A +  G+  + V    N     ++ LR       
Sbjct: 3   NELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGNPEIARRLLLRGAN--PD 60

Query: 380 ATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRV 439
              + G    H AA  G +  ++     +    ++  +          A EG    V  +
Sbjct: 61  LKDRTGFAVIHDAARAGFLDTLQ--TLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFL 118

Query: 440 LVKAGASCTDENKTGFTAVHLAAQNGHNQVLE 471
           +    ++    N  G TA  LA   G N+V+ 
Sbjct: 119 VKHTASNVGHRNHKGDTACDLARLYGRNEVVS 150

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.3 bits (118), Expect = 6e-08
 Identities = 27/195 (13%), Positives = 55/195 (28%), Gaps = 41/195 (21%)

Query: 147 SALHYACQVTKAELIPITSKEDQKTVKLLLEAGADVSLQTKQNHETAFHYCAVAGNNDVL 206
           + L  A             + D + +  LL+   +V+ Q                     
Sbjct: 3   NELASAAA-----------RGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGNPEIARR 51

Query: 207 TGMLEQMSGTEISKALNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSAL 266
             +             + +   G+  +  A   G ++ + T+L   A V++ D E     
Sbjct: 52  LLLRGANP--------DLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNE----- 98

Query: 267 HLAAEHGYLKVSSGKSLKHSVMSFRLPPHNIIPNGFLVHDHAAVIDILTLRKQTPLHLAA 326
                             +  +       ++    FLV   A+ +     +  T   LA 
Sbjct: 99  -----------------GNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLAR 141

Query: 327 EAGQLQVCKLLLDLG 341
             G+ +V  L+   G
Sbjct: 142 LYGRNEVVSLMQANG 156

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.2 bits (110), Expect = 6e-07
 Identities = 28/152 (18%), Positives = 42/152 (27%), Gaps = 22/152 (14%)

Query: 423 TPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVY 482
             L  AA  G    +  L++   +   +N  G TA+ +            +    A    
Sbjct: 3   NELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGNPEIA-RRLLLRGANPDL 61

Query: 483 SKKLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLG---------------- 526
             + G   +H AA  G  DT++ LL         D                         
Sbjct: 62  KDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKH 121

Query: 527 -----ELGSESGMTPLHLAAYSGNENVVRLLL 553
                   +  G T   LA   G   VV L+ 
Sbjct: 122 TASNVGHRNHKGDTACDLARLYGRNEVVSLMQ 153

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.3 bits (105), Expect = 3e-06
 Identities = 28/151 (18%), Positives = 53/151 (35%), Gaps = 10/151 (6%)

Query: 231 TPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVSSGKSLKHSV--- 287
             L  A  RG +E + ++L N+  V+  +  GR+AL +                 +    
Sbjct: 3   NELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGNPEIARRLLLRGANPDLK 62

Query: 288 ------MSFRLPPHNIIPNGFLVHDHAAVIDILTLRKQTPLHLAAEAGQL-QVCKLLLDL 340
                 +         +     + +  A ++I       PLHLAA+ G L  V  L+   
Sbjct: 63  DRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHT 122

Query: 341 GASIDATDDQGQKPIHVAAQNNFPEVAQIFL 371
            +++   + +G     +A      EV  +  
Sbjct: 123 ASNVGHRNHKGDTACDLARLYGRNEVVSLMQ 153

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.6 bits (98), Expect = 3e-05
 Identities = 25/180 (13%), Positives = 48/180 (26%), Gaps = 27/180 (15%)

Query: 72  TPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVVDLLIQFVQNISQ 131
             + +AA  G+L  L  LL++  +   +N  G T L +           LL++      +
Sbjct: 3   NELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGNPEIARRLLLRGANPDLK 62

Query: 132 EKVLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGADVSLQTKQNHE 191
           ++    V                                           +  Q   N E
Sbjct: 63  DRTGFAVIHDAARAGFLDTLQTL---------------------------LEFQADVNIE 95

Query: 192 TAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIACNRGHMELVNTMLNN 251
                  +          + +      +  +  +   G T   +A   G  E+V+ M  N
Sbjct: 96  DNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQAN 155

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.8 bits (83), Expect = 0.002
 Identities = 7/30 (23%), Positives = 10/30 (33%)

Query: 64  NLTTDDGQTPVHAAAKYGNLVTLQLLLEDG 93
                 G T    A  YG    + L+  +G
Sbjct: 127 GHRNHKGDTACDLARLYGRNEVVSLMQANG 156

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.0 bits (81), Expect = 0.004
 Identities = 21/171 (12%), Positives = 38/171 (22%), Gaps = 20/171 (11%)

Query: 12  TPLHIAARVKDGDRCALMLLKSGAGPNLTNIAARVKDGDRCALMLLKSGAGPNLTTDDGQ 71
             L  AA   D +     LL++    N  N       G     ++               
Sbjct: 3   NELASAAARGDLE-QLTSLLQNNVNVNAQN-----GFGRTALQVMKLGNPEIARRLLLRG 56

Query: 72  TPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVVDLLIQ---FVQN 128
                  + G  V          D +      +  +++        +     +    V  
Sbjct: 57  ANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVE 116

Query: 129 ISQEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEAG 179
              +     V   N  G +A   A                 + V L+   G
Sbjct: 117 FLVKHTASNVGHRNHKGDTACDLARL-----------YGRNEVVSLMQANG 156

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 51.9 bits (123), Expect = 2e-08
 Identities = 28/140 (20%), Positives = 51/140 (36%), Gaps = 18/140 (12%)

Query: 144 DGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGADVSLQTKQNH-----ETAFHYCA 198
           D A+ LH  C+  K          D   +      G D++ +    +     ETA H   
Sbjct: 2   DTAAKLHSLCEAVKTR--------DIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAV 53

Query: 199 VAGNNDVLTGMLEQMSGTEISKA-LNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDV 257
            + +       L  +     +   L+KQT  G T L   C   + E +  +L   A +++
Sbjct: 54  RSVDR----TSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEI 109

Query: 258 FDQEGRSALHLAAEHGYLKV 277
            ++ G + L +A    +   
Sbjct: 110 ANESGETPLDIAKRLKHEHC 129

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 51.1 bits (121), Expect = 2e-08
 Identities = 23/152 (15%), Positives = 43/152 (28%), Gaps = 15/152 (9%)

Query: 103 GETPLHLASRNCKAEVVDLLIQFVQNISQEKVLEYVNSVNEDGASALHYACQVTKAELIP 162
               LH      K   +  L+Q   +         + + +E   +ALH A +      + 
Sbjct: 3   TAAKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLH 62

Query: 163 ITSKEDQKTVKLLLEAGADVSLQTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKAL 222
           I        V  L++   ++  QT +      + C       +               ++
Sbjct: 63  I--------VDFLVQNSGNLDKQTGKGSTALHYCC-------LTDNAECLKLLLRGKASI 107

Query: 223 NKQTSIGWTPLLIACNRGHMELVNTMLNNHAR 254
                 G TPL IA    H      +    + 
Sbjct: 108 EIANESGETPLDIAKRLKHEHCEELLTQALSG 139

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 46.5 bits (109), Expect = 1e-06
 Identities = 19/138 (13%), Positives = 35/138 (25%), Gaps = 19/138 (13%)

Query: 231 TPLLIACNRGHMELVNTMLNNHARVDV------FDQEGRSALHLAA---EHGYLKV---- 277
             L  A     +  +     +   +          +   +ALHLA    +   L +    
Sbjct: 8   HSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFL 67

Query: 278 -SSGKSLKHSVMSFRLPPHNIIPNGFLVHDHA-----AVIDILTLRKQTPLHLAAEAGQL 331
             +  +L           H                  A I+I     +TPL +A      
Sbjct: 68  VQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHE 127

Query: 332 QVCKLLLDLGASIDATDD 349
              +LL    +    +  
Sbjct: 128 HCEELLTQALSGRFNSHV 145

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 42.7 bits (99), Expect = 2e-05
 Identities = 25/135 (18%), Positives = 45/135 (33%), Gaps = 9/135 (6%)

Query: 384 DGNTCAHIAAMQGSVGVIEELMKFDRSGV-ISARNRVTEA-----TPLQLAA---EGGHA 434
           D     H          I  L++    GV ++ +  +        T L LA    +    
Sbjct: 2   DTAAKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSL 61

Query: 435 NVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLGVTALHVA 494
           ++V  LV+   +   +   G TA+H      + + L+ +   KA    + + G T L +A
Sbjct: 62  HIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIA 121

Query: 495 AYFGQADTVRELLSH 509
                      L   
Sbjct: 122 KRLKHEHCEELLTQA 136

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 42.7 bits (99), Expect = 2e-05
 Identities = 32/131 (24%), Positives = 43/131 (32%), Gaps = 18/131 (13%)

Query: 12  TPLHIAAR-VKDGDRCALM-LLKSGAGPNLTNIAARVKDGDRCALM-------------- 55
             LH     VK  D   L+     G         A   + D  AL               
Sbjct: 5   AKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIV 64

Query: 56  --LLKSGAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRN 113
             L+++    +  T  G T +H      N   L+LLL         N+ GETPL +A R 
Sbjct: 65  DFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRL 124

Query: 114 CKAEVVDLLIQ 124
                 +LL Q
Sbjct: 125 KHEHCEELLTQ 135

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 42.7 bits (99), Expect = 2e-05
 Identities = 19/95 (20%), Positives = 34/95 (35%), Gaps = 9/95 (9%)

Query: 11  ETPLHIAARVKDGD--RCALMLLKSGAGPNLTNIAARV-------KDGDRCALMLLKSGA 61
           ET LH+A R  D         L+++    +                D   C  +LL+  A
Sbjct: 46  ETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKA 105

Query: 62  GPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDP 96
              +  + G+TP+  A +  +    +LL +     
Sbjct: 106 SIEIANESGETPLDIAKRLKHEHCEELLTQALSGR 140

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 41.9 bits (97), Expect = 4e-05
 Identities = 23/147 (15%), Positives = 45/147 (30%), Gaps = 16/147 (10%)

Query: 423 TPLQLAAEGGHANVVRVLVKAGA------SCTDENKTGFTAVHLAAQNGHNQVLEEMRSS 476
             L  A +      +      G          + ++   TA+HLA ++     L  +   
Sbjct: 8   HSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIV--- 64

Query: 477 KALNVYSKKLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTP 536
                    L   + ++    G+  T                        E+ +ESG TP
Sbjct: 65  -------DFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETP 117

Query: 537 LHLAAYSGNENVVRLLLNSAGVQVDAQ 563
           L +A    +E+   LL  +   + ++ 
Sbjct: 118 LDIAKRLKHEHCEELLTQALSGRFNSH 144

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 39.2 bits (90), Expect = 3e-04
 Identities = 20/91 (21%), Positives = 34/91 (37%), Gaps = 4/91 (4%)

Query: 319 QTPLHLAAEA---GQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHP 375
           +T LHLA  +     L +   L+    ++D    +G   +H     +  E  ++ LR   
Sbjct: 46  ETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKA 105

Query: 376 SLVTATTKDGNTCAHIAAMQGSVGVIEELMK 406
           S +    + G T   IA         E L +
Sbjct: 106 S-IEIANESGETPLDIAKRLKHEHCEELLTQ 135

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.7 bits (119), Expect = 2e-08
 Identities = 29/124 (23%), Positives = 45/124 (36%), Gaps = 4/124 (3%)

Query: 320 TPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVT 379
             L  AA  G+++  + LL+ GA+ +A +  G++PI V    +      + L        
Sbjct: 5   DWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMMGSARVAELLLLHGAEPNCA 64

Query: 380 ATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRV 439
                       A       ++       R  V  A  R     P+ LA E GH +V R 
Sbjct: 65  DPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGR----LPVDLAEELGHRDVARY 120

Query: 440 LVKA 443
           L  A
Sbjct: 121 LRAA 124

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.6 bits (111), Expect = 3e-07
 Identities = 24/135 (17%), Positives = 36/135 (26%), Gaps = 13/135 (9%)

Query: 422 ATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNV 481
           A  L  AA  G    VR L++AGA+    N                              
Sbjct: 4   ADWLATAAARGRVEEVRALLEAGANP---NAPNSYGRRPIQVMMMGSARVAELLLLHGAE 60

Query: 482 YSKKLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAA 541
            +     T         +   +  L+       + D               G  P+ LA 
Sbjct: 61  PNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRD----------AWGRLPVDLAE 110

Query: 542 YSGNENVVRLLLNSA 556
             G+ +V R L  +A
Sbjct: 111 ELGHRDVARYLRAAA 125

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.2 bits (97), Expect = 2e-05
 Identities = 19/121 (15%), Positives = 31/121 (25%), Gaps = 10/121 (8%)

Query: 229 GWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVSSGKSLKHSVM 288
               L  A  RG +E V  +L   A  +  +  GR  + +                    
Sbjct: 3   SADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMMGSARVAELLLLHGAEPN 62

Query: 289 SFRLPPHNIIPNGFLVH----------DHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLL 338
                      +                  A +D+     + P+ LA E G   V + L 
Sbjct: 63  CADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLR 122

Query: 339 D 339
            
Sbjct: 123 A 123

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.3 bits (92), Expect = 9e-05
 Identities = 27/135 (20%), Positives = 43/135 (31%), Gaps = 18/135 (13%)

Query: 143 EDGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGADVSLQTKQNHETAFHYCAVAGN 202
           E  A  L  A             +   + V+ LLEAGA+ +                +  
Sbjct: 1   EPSADWLATAAA-----------RGRVEEVRALLEAGANPNAPNSYGRRPIQVMMMGSAR 49

Query: 203 NDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEG 262
              L  +                 +    P+  A   G ++ +  +    AR+DV D  G
Sbjct: 50  VAELLLLHGAEPN-------CADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWG 102

Query: 263 RSALHLAAEHGYLKV 277
           R  + LA E G+  V
Sbjct: 103 RLPVDLAEELGHRDV 117

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.7 bits (80), Expect = 0.004
 Identities = 18/120 (15%), Positives = 31/120 (25%), Gaps = 8/120 (6%)

Query: 12  TPLHIAARVKDGDRCALMLLKSGAGPNLTNIAARVKDGDRCALMLLKSGAGPNLTTDDGQ 71
             L  AA     +     LL++GA PN  N   R             +        +   
Sbjct: 5   DWLATAAARGRVE-EVRALLEAGANPNAPNSYGRRPIQVMMMGSARVAELLLLHGAEPNC 63

Query: 72  TPVHAAAKYGNLVTLQLLLEDGGDPMY-------KNKIGETPLHLASRNCKAEVVDLLIQ 124
                  +  +    +  L+              ++  G  P+ LA      +V   L  
Sbjct: 64  ADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRA 123

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.2 bits (118), Expect = 6e-08
 Identities = 34/161 (21%), Positives = 58/161 (36%), Gaps = 5/161 (3%)

Query: 350 QGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIEELMKFDR 409
           +    +  AA     +  +  L        A  + G T   +     +   +E L +   
Sbjct: 1   RAGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSTAIALELLKQGAS 60

Query: 410 SGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQV 469
             V             +     G  + ++VLV+ GA     + TG   +HLA Q GH  V
Sbjct: 61  PNVQDTSGTSPVHDAAR----TGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAV 116

Query: 470 LEEMRSSKALNVYSKKLGVTALHVAAYFGQADTVRELLSHV 510
           +  + +   L+    + G+T L +A   G  D V  L  H+
Sbjct: 117 VSFLAAESDLHRRDAR-GLTPLELALQRGAQDLVDILQGHM 156

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.9 bits (112), Expect = 3e-07
 Identities = 25/153 (16%), Positives = 53/153 (34%), Gaps = 11/153 (7%)

Query: 229 GWTPLLIACNRGHMELVNTMLNNH-ARVDVFDQEGRSALHLAA---------EHGYLKVS 278
               L  A  RG ++ V  +L+      D  ++ G++AL +                   
Sbjct: 2   AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSTAIALELLKQGASP 61

Query: 279 SGKSLKHSVMSFRLPPHNIIPNGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLL 338
           + +    +           +    ++ +H A +++       P+HLA + G   V   L 
Sbjct: 62  NVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLA 121

Query: 339 DLGASIDATDDQGQKPIHVAAQNNFPEVAQIFL 371
              + +   D +G  P+ +A Q    ++  I  
Sbjct: 122 A-ESDLHRRDARGLTPLELALQRGAQDLVDILQ 153

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.6 bits (106), Expect = 2e-06
 Identities = 24/156 (15%), Positives = 43/156 (27%), Gaps = 7/156 (4%)

Query: 317 RKQTPLHLAAEAGQLQVCKLLLDL-GASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHP 375
           R    L  AA  G +Q  + LL       DA +  G+  + V    +     ++  +   
Sbjct: 1   RAGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSTAIALELLKQGAS 60

Query: 376 SLVTATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHAN 435
             V  T+                  +      D +                  A      
Sbjct: 61  PNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVN------VPDGTGALPIHLAVQEGHT 114

Query: 436 VVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLE 471
            V   + A +     +  G T + LA Q G   +++
Sbjct: 115 AVVSFLAAESDLHRRDARGLTPLELALQRGAQDLVD 150

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.3 bits (95), Expect = 6e-05
 Identities = 27/196 (13%), Positives = 49/196 (25%), Gaps = 44/196 (22%)

Query: 145 GASALHYACQVTKAELIPITSKEDQKTVKLLLEA-GADVSLQTKQNHETAFHYCAVAGNN 203
               L  A             + D + V+ LL           +            +   
Sbjct: 2   AGDRLSGAAA-----------RGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSTAI 50

Query: 204 DVLTGMLEQMSGTEISKALNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGR 263
            +                 N Q + G +P+  A   G ++ +  ++ + A V+V D  G 
Sbjct: 51  ALELLKQGASP--------NVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGA 102

Query: 264 SALHLAAEHGYLKVSSGKSLKHSVMSFRLPPHNIIPNGFLVHDHAAVIDILTLRKQTPLH 323
             +HL                                        + +     R  TPL 
Sbjct: 103 LPIHL------------------------AVQEGHTAVVSFLAAESDLHRRDARGLTPLE 138

Query: 324 LAAEAGQLQVCKLLLD 339
           LA + G   +  +L  
Sbjct: 139 LALQRGAQDLVDILQG 154

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.0 bits (94), Expect = 9e-05
 Identities = 26/177 (14%), Positives = 55/177 (31%), Gaps = 29/177 (16%)

Query: 101 KIGETPLHLASRNCKAEVVDLLIQFVQNISQEKVLEYVNSVNEDGASALHYACQVTKAEL 160
           + G+  L  A+     + V  L+         + L + +++N  G +AL      + A  
Sbjct: 1   RAGDR-LSGAAARGDVQEVRRLL--------HRELVHPDALNRFGKTALQVMMFGSTAIA 51

Query: 161 IPITSKEDQKTVKLLLEAGADVSLQTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEISK 220
           + +                     Q    +       +   +      +       E   
Sbjct: 52  LELLK-------------------QGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGA 92

Query: 221 ALNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKV 277
            +N     G  P+ +A   GH  +V+ +    + +   D  G + L LA + G   +
Sbjct: 93  DVNVPDGTGALPIHLAVQEGHTAVVSFLA-AESDLHRRDARGLTPLELALQRGAQDL 148

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.8 bits (91), Expect = 2e-04
 Identities = 29/184 (15%), Positives = 54/184 (29%), Gaps = 31/184 (16%)

Query: 70  GQTPVHAAAKYGNLVTLQLLLEDGG-DPMYKNKIGETPLHLASRNCKAEVVDLLIQFVQN 128
               +  AA  G++  ++ LL      P   N+ G+T L +      A  ++LL Q    
Sbjct: 2   AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSTAIALELLKQGASP 61

Query: 129 ISQEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGADVSLQTKQ 188
             Q+                      V     + +                    +    
Sbjct: 62  NVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALP------------IHLAV 109

Query: 189 NHETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIACNRGHMELVNTM 248
                     +A  +D+                 +++ + G TPL +A  RG  +LV+ +
Sbjct: 110 QEGHTAVVSFLAAESDL-----------------HRRDARGLTPLELALQRGAQDLVD-I 151

Query: 249 LNNH 252
           L  H
Sbjct: 152 LQGH 155

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.8 bits (91), Expect = 2e-04
 Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 1/65 (1%)

Query: 60  GAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVV 119
           GA  N+    G  P+H A + G+   +  L  +  D   ++  G TPL LA +    ++V
Sbjct: 91  GADVNVPDGTGALPIHLAVQEGHTAVVSFLAAES-DLHRRDARGLTPLELALQRGAQDLV 149

Query: 120 DLLIQ 124
           D+L  
Sbjct: 150 DILQG 154

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.0 bits (89), Expect = 4e-04
 Identities = 26/151 (17%), Positives = 44/151 (29%), Gaps = 19/151 (12%)

Query: 423 TPLQLAAEGGHANVVRVLV-KAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNV 481
             L  AA  G    VR L+ +        N+ G TA+ +         LE ++   + NV
Sbjct: 4   DRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSTAIALELLKQGASPNV 63

Query: 482 YSKKLGVTALHVAAYFGQADTV----------------RELLSHVPGTVKSDPPTGASFL 525
                       A                            +        +   +  +  
Sbjct: 64  QDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE 123

Query: 526 GELGS--ESGMTPLHLAAYSGNENVVRLLLN 554
            +L      G+TPL LA   G +++V +L  
Sbjct: 124 SDLHRRDARGLTPLELALQRGAQDLVDILQG 154

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.7 bits (112), Expect = 2e-07
 Identities = 22/126 (17%), Positives = 46/126 (36%), Gaps = 1/126 (0%)

Query: 320 TPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVT 379
             L  ++  G+  + + ++         +D+G   +H A      E+ +  ++   + V 
Sbjct: 3   ALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVN-VN 61

Query: 380 ATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRV 439
           A   DG T  H AA   +V V + L++   +      + +  A       E G+    + 
Sbjct: 62  AADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQF 121

Query: 440 LVKAGA 445
           L     
Sbjct: 122 LYGVQE 127

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.5 bits (101), Expect = 8e-06
 Identities = 18/127 (14%), Positives = 39/127 (30%), Gaps = 13/127 (10%)

Query: 231 TPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVSSGKSLKHSVMSF 290
             LL +   G  +LV  ++       + + EG +ALH A   G+ ++          ++ 
Sbjct: 3   ALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNA 62

Query: 291 RLPPHNIIPNGFLVH----------DHAAVIDILT---LRKQTPLHLAAEAGQLQVCKLL 337
                    +               +  A +  +T   ++         E G  Q  + L
Sbjct: 63  ADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFL 122

Query: 338 LDLGASI 344
             +   +
Sbjct: 123 YGVQEKM 129

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.4 bits (93), Expect = 8e-05
 Identities = 23/134 (17%), Positives = 44/134 (32%), Gaps = 14/134 (10%)

Query: 423 TPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVY 482
             L  ++  G  ++V+ ++      +  N  G TA+H A   GH ++++ +         
Sbjct: 3   ALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNA 62

Query: 483 SKKLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHL--A 540
           +   G T LH AA        + L+             GA+ +  +      T       
Sbjct: 63  ADSDGWTPLHCAASCNNVQVCKFLVES-----------GAA-VFAMTYSDMQTAADKCEE 110

Query: 541 AYSGNENVVRLLLN 554
              G     + L  
Sbjct: 111 MEEGYTQCSQFLYG 124

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 118

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 38.7 bits (88), Expect = 3e-04
 Identities = 29/130 (22%), Positives = 42/130 (32%), Gaps = 16/130 (12%)

Query: 423 TPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVY 482
                A + G  + V+  V  G       + G   +H AA  G  ++LE +    A    
Sbjct: 4   KEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINA 63

Query: 483 SKKLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAY 542
             K  +T L  A Y G    V+ LLS                        G+T L     
Sbjct: 64  PDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKG-------------PDGLTALEATD- 109

Query: 543 SGNENVVRLL 552
             N+ +  LL
Sbjct: 110 --NQAIKALL 117

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	567
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	100.0
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	100.0
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	100.0
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	100.0
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	100.0
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	100.0
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	100.0
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	100.0
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.97
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.97
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.97
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.97
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.97
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.96
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.96
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.95
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.94
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.94
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.94
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.94
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.93
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.93
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.93
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.93
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.91
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.91
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.91
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.9
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.89
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.89
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.88
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.87

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.9e-54  Score=415.62  Aligned_cols=394  Identities=32%  Similarity=0.436  Sum_probs=342.1

Q ss_pred             ChHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCChhHHHHhcCchhHHHHHHHhhhhhhhhHHhhhhcccccccccHHH
Q psy12891         71 QTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVVDLLIQFVQNISQEKVLEYVNSVNEDGASALH  150 (567)
Q Consensus        71 ~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~t~L~  150 (567)
                      .||||+||..|+.++|++|+++|++++..|..|.||||+|+..|+.+++++|+++|++         ++.++..|.|||+
T Consensus         1 ~TpL~~Aa~~g~~~~v~~Ll~~g~~in~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad---------i~~~~~~g~t~L~   71 (408)
T d1n11a_           1 LTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAK---------VNAKAKDDQTPLH   71 (408)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCC---------SSCCCTTSCCHHH
T ss_pred             CChHHHHHHCcCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCcCC---------CCCCCCCCCCHHH
Confidence            4899999999999999999999999999999999999999999999999999999988         6888999999999


Q ss_pred             HHHHhCCcccccccccccHHHHHHHHHcCCCccccccCCCccHHHHHHhcCCHHHHHHHHHhccCcchhhhhhcCCCCCC
Q psy12891        151 YACQVTKAELIPITSKEDQKTVKLLLEAGADVSLQTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGW  230 (567)
Q Consensus       151 ~a~~~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~  230 (567)
                      +|+..+           +.+++++|+..+.++....... .+++..+...+...........+..      ....+..+.
T Consensus        72 ~A~~~g-----------~~~~~~~Ll~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~  133 (408)
T d1n11a_          72 CAARIG-----------HTNMVKLLLENNANPNLATTAG-HTPLHIAAREGHVETVLALLEKEAS------QACMTKKGF  133 (408)
T ss_dssp             HHHHHT-----------CHHHHHHHHHHTCCTTCCCTTC-CCHHHHHHHHTCHHHHHHHHHTTCC------SCCCCTTSC
T ss_pred             HHHHcC-----------CHHHHHHHHHhhhccccccccc-cchhhhhhhhccccccccccccccc------ccccccccc
Confidence            999854           5667999999998776655444 7889999888888877776665433      355677899


Q ss_pred             hHHHHHHhcCcHHHHHHHHhCCCCCCccCCCCCCHHHHHHHcCCeeeeccccccccccccCCCCCCCCCCCccccchhhh
Q psy12891        231 TPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVSSGKSLKHSVMSFRLPPHNIIPNGFLVHDHAAV  310 (567)
Q Consensus       231 ~~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~  310 (567)
                      ++++.|+..++.+++++|+++|.+++..+..|.                                               
T Consensus       134 ~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~-----------------------------------------------  166 (408)
T d1n11a_         134 TPLHVAAKYGKVRVAELLLERDAHPNAAGKNGL-----------------------------------------------  166 (408)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSCC-----------------------------------------------
T ss_pred             hHHHHHHHcCCHHHHHHHHHcCCCCCcCCCcCc-----------------------------------------------
Confidence            999999999999999999999998887665544                                               


Q ss_pred             hhhhhhcCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCcCCCCHHHHHHHcCCHHHHHHHHHhCCCCccccCCCCCcHHH
Q psy12891        311 IDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAH  390 (567)
Q Consensus       311 ~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~  390 (567)
                               +||+.|+..|+.+++++|+++|++++..+..|.||++.+......+....++..... ....+..+.||++
T Consensus       167 ---------~~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~t~l~  236 (408)
T d1n11a_         167 ---------TPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGS-ANAESVQGVTPLH  236 (408)
T ss_dssp             ---------CHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTCCCHHH
T ss_pred             ---------hHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcchhhhccchhhhhhhhhhcccc-ccccCCCCCCHHH
Confidence                     455666667788999999999999999999999999999999999999999887666 5567778999999


Q ss_pred             HHHHcCCHHHHHHHHhcCCCcccccCCCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCccCcCCcHHHHHHHcCcHHHH
Q psy12891        391 IAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVL  470 (567)
Q Consensus       391 ~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v  470 (567)
                      .|+..+..++++++........   ..+..|.|||+.|++.++.+++++|+++|++++..+..+.|||+.|+..++.+++
T Consensus       237 ~a~~~~~~~~~~~~~~~~~~~~---~~~~~g~~~l~~a~~~~~~~i~~~Ll~~g~~~~~~~~~~~t~L~~~~~~~~~~~~  313 (408)
T d1n11a_         237 LAAQEGHAEMVALLLSKQANGN---LGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLV  313 (408)
T ss_dssp             HHHHTTCHHHHHHHHTTTCCTT---CCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCSSCCCHHHHHHHSSCSHHH
T ss_pred             HHHHhCcHhHhhhhhccccccc---cccCCCCChhhhhhhcCcHHHHHHHHHCCCccccccccccccchhhcccCcceee
Confidence            9999999999999998765433   3445788999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhcccccccccccCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcccccccCCCCCCCHHHHHHHcCCHHHHH
Q psy12891        471 EEMRSSKALNVYSKKLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVR  550 (567)
Q Consensus       471 ~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~  550 (567)
                      +++++.|++++.+|..|+||||+|++.|+.++|++|+++|++.             +.+|..|.||||+|+++|+.++|+
T Consensus       314 ~~ll~~g~~in~~d~~G~T~Lh~A~~~g~~~iv~~Ll~~GAd~-------------n~~d~~G~t~L~~A~~~~~~~iv~  380 (408)
T d1n11a_         314 KFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASP-------------NEVSSDGTTPLAIAKRLGYISVTD  380 (408)
T ss_dssp             HHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCS-------------CCCCSSSCCHHHHHHHTTCHHHHH
T ss_pred             eeeccccccccccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-------------CCCCCCCCCHHHHHHHcCCHHHHH
Confidence            9999999999999999999999999999999999999998865             677899999999999999999998


Q ss_pred             HHHh--ccCCcccccc
Q psy12891        551 LLLN--SAGVQVDAQT  564 (567)
Q Consensus       551 ~Ll~--~~g~~~~~~~  564 (567)
                      +|..  ..+.+..+.+
T Consensus       381 ~L~~~~~~~~~~~~~~  396 (408)
T d1n11a_         381 VLKVVTDETSFVLVSD  396 (408)
T ss_dssp             HHHHHCCCCSSCC---
T ss_pred             HHHHHHhccccccccc
Confidence            6533  1255555443

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.8e-54  Score=415.70  Aligned_cols=384  Identities=29%  Similarity=0.375  Sum_probs=332.4

Q ss_pred             CChhhHHhhcCChhHHHHHHhhcCCCCChhhhHhhhcCchHHHHHHHhcCCCCCCCCCCCChHHHHHHHhCCHHHHHHHH
Q psy12891         11 ETPLHIAARVKDGDRCALMLLKSGAGPNLTNIAARVKDGDRCALMLLKSGAGPNLTTDDGQTPVHAAAKYGNLVTLQLLL   90 (567)
Q Consensus        11 ~t~L~~A~~~g~~~~v~~~L~~~g~~~~~~~~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll   90 (567)
                      .||||+||..|+.+.|                           ++|+++|+++|.+|..|+||||+||..|+.++|++|+
T Consensus         1 ~TpL~~Aa~~g~~~~v---------------------------~~Ll~~g~~in~~d~~g~TpL~~A~~~g~~~iv~~Ll   53 (408)
T d1n11a_           1 LTPLHVASFMGHLPIV---------------------------KNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLL   53 (408)
T ss_dssp             CCHHHHHHHHTCHHHH---------------------------HHHHHTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHH
T ss_pred             CChHHHHHHCcCHHHH---------------------------HHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHH
Confidence            5999999999998844                           3578899999999999999999999999999999999


Q ss_pred             HcCCCCCCCCCCCCChhHHHHhcCchhHHHHHHHhhhhhhhhHHhhhhcccccccccHHHHHHHhCCcccccccccccHH
Q psy12891         91 EDGGDPMYKNKIGETPLHLASRNCKAEVVDLLIQFVQNISQEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQK  170 (567)
Q Consensus        91 ~~ga~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~~  170 (567)
                      ++|++++.++..|.||||+|+..|+.+++++|+..+..         .........+++..+...+           ...
T Consensus        54 ~~gadi~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~---------~~~~~~~~~~~~~~~~~~~-----------~~~  113 (408)
T d1n11a_          54 QNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNAN---------PNLATTAGHTPLHIAAREG-----------HVE  113 (408)
T ss_dssp             HHTCCSSCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCC---------TTCCCTTCCCHHHHHHHHT-----------CHH
T ss_pred             HCcCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHhhhc---------cccccccccchhhhhhhhc-----------ccc
Confidence            99999999999999999999999999999999998766         4455666778888887743           444


Q ss_pred             HHHHHHHcCCCccccccCCCccHHHHHHhcCCHHHHHHHHHhccCcchhhhhhcCCCCCChHHHHHHhcCcHHHHHHHHh
Q psy12891        171 TVKLLLEAGADVSLQTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIACNRGHMELVNTMLN  250 (567)
Q Consensus       171 ~v~~Ll~~g~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~L~~A~~~~~~~~v~~Ll~  250 (567)
                      ........+......+.. +.++++.|+..++.+++++|++.+...      +..+..+.+||++|+..++.+++++|++
T Consensus       114 ~~~~~~~~~~~~~~~~~~-~~~~l~~a~~~~~~~~v~~ll~~~~~~------~~~~~~~~~~L~~A~~~~~~~~~~~Ll~  186 (408)
T d1n11a_         114 TVLALLEKEASQACMTKK-GFTPLHVAAKYGKVRVAELLLERDAHP------NAAGKNGLTPLHVAVHHNNLDIVKLLLP  186 (408)
T ss_dssp             HHHHHHHTTCCSCCCCTT-SCCHHHHHHHTTCHHHHHHHHHTTCCT------TCCCSSCCCHHHHHHHTTCHHHHHHHGG
T ss_pred             cccccccccccccccccc-cchHHHHHHHcCCHHHHHHHHHcCCCC------CcCCCcCchHHHHHHHcCCHHHHHHHHh
Confidence            566677777777655544 489999999999999999999987654      5677889999999999999999999999


Q ss_pred             CCCCCCccCCCCCCHHHHHHHcCCeeeeccccccccccccCCCCCCCCCCCccccchhhhhhhhhhcCCCHHHHHHHcCc
Q psy12891        251 NHARVDVFDQEGRSALHLAAEHGYLKVSSGKSLKHSVMSFRLPPHNIIPNGFLVHDHAAVIDILTLRKQTPLHLAAEAGQ  330 (567)
Q Consensus       251 ~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~L~~a~~~~~  330 (567)
                      +|++++..+..|.||++.                                                        ++....
T Consensus       187 ~g~~~~~~~~~~~t~l~~--------------------------------------------------------~~~~~~  210 (408)
T d1n11a_         187 RGGSPHSPAWNGYTPLHI--------------------------------------------------------AAKQNQ  210 (408)
T ss_dssp             GTCCSCCCCTTCCCHHHH--------------------------------------------------------HHHTTC
T ss_pred             cCCcccccCCCCCCcchh--------------------------------------------------------hhccch
Confidence            999998877666655554                                                        445566


Q ss_pred             HHHHHHHHHcCCCCCCcCcCCCCHHHHHHHcCCHHHHHHHHHhCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCC
Q psy12891        331 LQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIEELMKFDRS  410 (567)
Q Consensus       331 ~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~  410 (567)
                      .++...++..+......+..+.|||++|+..+..++++++...... .+..+..|.+|++.++..++.+++++|++.+.+
T Consensus       211 ~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~l~~a~~~~~~~i~~~Ll~~g~~  289 (408)
T d1n11a_         211 VEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQAN-GNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVM  289 (408)
T ss_dssp             HHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCC-TTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCC
T ss_pred             hhhhhhhhhccccccccCCCCCCHHHHHHHhCcHhHhhhhhccccc-cccccCCCCChhhhhhhcCcHHHHHHHHHCCCc
Confidence            7788888888888888888889999999999999999988887665 567788889999999999999999999987766


Q ss_pred             cccccCCCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCccCcCCcHHHHHHHcCcHHHHHHHHhcccccccccccCCcH
Q psy12891        411 GVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLGVTA  490 (567)
Q Consensus       411 ~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~  490 (567)
                      ..   .....+.|||+.++..++.++++++++.|+++|.+|..|+||||+|++.|+.++|++|+++|++++.+|..|+||
T Consensus       290 ~~---~~~~~~~t~L~~~~~~~~~~~~~~ll~~g~~in~~d~~G~T~Lh~A~~~g~~~iv~~Ll~~GAd~n~~d~~G~t~  366 (408)
T d1n11a_         290 VD---ATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTP  366 (408)
T ss_dssp             TT---CCCSSCCCHHHHHHHSSCSHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCSSSCCH
T ss_pred             cc---cccccccccchhhcccCcceeeeeeccccccccccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCH
Confidence            33   333367899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHh
Q psy12891        491 LHVAAYFGQADTVRELLS  508 (567)
Q Consensus       491 l~~A~~~~~~~~~~~Ll~  508 (567)
                      ||+|++.|+.++|++|..
T Consensus       367 L~~A~~~~~~~iv~~L~~  384 (408)
T d1n11a_         367 LAIAKRLGYISVTDVLKV  384 (408)
T ss_dssp             HHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHH
Confidence            999999999999987654

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.9e-36  Score=275.86  Aligned_cols=268  Identities=25%  Similarity=0.235  Sum_probs=231.0

Q ss_pred             CChHHHHHHhcCcHHHHHHHHhCCCCCCccCCCCCCHHHHHHHcCCeeeeccccccccccccCCCCCCCCCCCccccchh
Q psy12891        229 GWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVSSGKSLKHSVMSFRLPPHNIIPNGFLVHDHA  308 (567)
Q Consensus       229 ~~~~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~  308 (567)
                      +.|+|+.|++.|+.++|++|+++|++++.++.                                                
T Consensus         5 ~~~~L~~Ai~~~~~e~vk~Ll~~G~din~~~~------------------------------------------------   36 (285)
T d1wdya_           5 DNHLLIKAVQNEDVDLVQQLLEGGANVNFQEE------------------------------------------------   36 (285)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTTCCTTCCCT------------------------------------------------
T ss_pred             CcHHHHHHHHcCCHHHHHHHHHCCCCcCccCC------------------------------------------------
Confidence            45899999999999999999999999986542                                                


Q ss_pred             hhhhhhhhcCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCcCCCCHHHHHHHcCCHHHHHHHHHhCCCCccccCCCCCcH
Q psy12891        309 AVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTC  388 (567)
Q Consensus       309 ~~~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~  388 (567)
                             ..|.||||+|+..|+.+++++|++.|..++..+..+.+|.+.+...+..+...++++.... ....+..+.++
T Consensus        37 -------~~g~tpL~~A~~~~~~eiv~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  108 (285)
T d1wdya_          37 -------EGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGAD-VNECDFYGFTA  108 (285)
T ss_dssp             -------TTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC-TTCBCTTCCBH
T ss_pred             -------CCCCCHHHHHHHcCCHHHhhhhccccccccccccccchhhHHHhhcCCccccchhhhhccc-ccccccCCCch
Confidence                   2355777777788889999999999999999999999999999999999999999988665 45667889999


Q ss_pred             HHHHHHcCCHHHHHHHHhcCCCcc-------cccCCCCCCCCHHHHHHHcCcHHHHHHHHH-cCCCCCCccCcCCcHHHH
Q psy12891        389 AHIAAMQGSVGVIEELMKFDRSGV-------ISARNRVTEATPLQLAAEGGHANVVRVLVK-AGASCTDENKTGFTAVHL  460 (567)
Q Consensus       389 l~~a~~~~~~~~~~~ll~~~~~~~-------~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~~~g~t~l~~  460 (567)
                      ++.++..+....++.++.......       ........|.||||+|++.|+.+++++|++ .|++++..+..|.+++..
T Consensus       109 l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~i~~~~~~~~~~~~~  188 (285)
T d1wdya_         109 FMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIH  188 (285)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHH
T ss_pred             hHHHHHhcchhhhhhhhhhcccccccccchhhhhhhcccCchHHHHHHHcCCHHHHHHHHhccCCCcccccCCCCccccc
Confidence            999999999999998887654422       222344578899999999999999999997 589999999999999888


Q ss_pred             HHHcC----cHHHHHHHHhcccccccccccCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcccccccCCCCCCCH
Q psy12891        461 AAQNG----HNQVLEEMRSSKALNVYSKKLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTP  536 (567)
Q Consensus       461 A~~~~----~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~g~t~  536 (567)
                      +...+    ..+++++|+++|++++.++..|.||||.|+..|+.+++++|+++.+..+            +.+|..|.||
T Consensus       189 ~~~~~~~~~~~~i~~~Li~~ga~~n~~~~~g~t~L~~a~~~~~~~~v~~lL~~~g~di------------n~~d~~G~Tp  256 (285)
T d1wdya_         189 ALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEI------------NDTDSDGKTA  256 (285)
T ss_dssp             HHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHHSSSCCT------------TCCCTTSCCH
T ss_pred             ccccccchHHHHHHHHHHHCCCCCCccCCCCCCccchhhhcCcHHHHHHHHHcCCCCC------------cCCCCCCCCH
Confidence            76543    4579999999999999999999999999999999999999998644332            5668999999


Q ss_pred             HHHHHHcCCHHHHHHHHhccCCccccccc
Q psy12891        537 LHLAAYSGNENVVRLLLNSAGVQVDAQTQ  565 (567)
Q Consensus       537 l~~A~~~~~~~~v~~Ll~~~g~~~~~~~~  565 (567)
                      ||+|+++|+.++|++||++ |||||++|-
T Consensus       257 L~~A~~~~~~eiv~~Ll~~-GAd~n~~d~  284 (285)
T d1wdya_         257 LLLAVELKLKKIAELLCKR-GASTDCGDL  284 (285)
T ss_dssp             HHHHHHTTCHHHHHHHHHH-SSCSCCSSC
T ss_pred             HHHHHHcCCHHHHHHHHHC-CCCCCcccC
Confidence            9999999999999999997 999999873

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.4e-35  Score=257.86  Aligned_cols=219  Identities=21%  Similarity=0.249  Sum_probs=200.6

Q ss_pred             CCCHHHHHHHcCcHHHHHHHH-HcCCCCCCcCcCCCCHHHHHHHcCCHHHHHHHHHhCCCCccccCCCCCcHHHHHHHcC
Q psy12891        318 KQTPLHLAAEAGQLQVCKLLL-DLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQG  396 (567)
Q Consensus       318 ~~t~L~~a~~~~~~~~v~~Ll-~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~  396 (567)
                      +++.++.++..|+.+.++.++ +.+.+++.+|..|+||||+|+..|+.+++++|+..... .......+.++++.++..+
T Consensus         3 ~~~~~~~~a~~G~~~~v~~~l~~~~~~~~~~D~~G~TpLh~Aa~~g~~e~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~   81 (223)
T d1uoha_           3 SNLMVCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVP-VNDKDDAGWSPLHIAASAG   81 (223)
T ss_dssp             SSSHHHHHHHTTCHHHHHHHHHHCGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCC-SCCCCTTCCCHHHHHHHHT
T ss_pred             CHHHHHHHHHhCCHHHHHHHHHhCCCcCcCcCCCCCCHHHHHHHhhhhcccccccccccc-ccccccccccccccccccc
Confidence            457889999999999886655 56789999999999999999999999999999998876 5666778899999999999


Q ss_pred             CHHHHHHHHhcCCCcccccCCCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCccCcCCcHHHHHHHcCcHHHHHHHHhc
Q psy12891        397 SVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSS  476 (567)
Q Consensus       397 ~~~~~~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~  476 (567)
                      +.+++++|++.+.+.   ...+..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..++.+++++|++.
T Consensus        82 ~~~i~~~Ll~~~~d~---~~~d~~g~tpL~~A~~~~~~e~~~~Ll~~g~d~~~~~~~~~t~L~~a~~~~~~~~~~~L~~~  158 (223)
T d1uoha_          82 RDEIVKALLGKGAQV---NAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYY  158 (223)
T ss_dssp             CHHHHHHHHHTTCCT---TCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred             ccchhHHHhccCcee---EeeCCCCCchhhHHHHcCCHHHHHHHHHCCCCCCCcCCCCCccchhhhhcCCcchhhhhccc
Confidence            999999999987653   44566889999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccccccccCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcccccccCCCCCCCHHHHHHHcCCHHHHHHHHh
Q psy12891        477 KALNVYSKKLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVRLLLN  554 (567)
Q Consensus       477 ~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~  554 (567)
                      +.+++.+|..|+||||+|+..|+.+++++|++.+++.             +.+|..|.||||+| .+|+.+|+++||+
T Consensus       159 ~~~i~~~d~~g~TpL~~Aa~~g~~~~v~~LL~~Gad~-------------~~~d~~g~tpl~~A-~~~~~~i~~~Ll~  222 (223)
T d1uoha_         159 KASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGASI-------------YIENKEEKTPLQVA-KGGLGLILKRMVE  222 (223)
T ss_dssp             TCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCS-------------CCCCTTSCCHHHHC-CTTHHHHHHHHHC
T ss_pred             cceeeeccCCCCceeccccccCcHHHHHHHHHCCCCC-------------CCCCCCCCCHHHHH-HCCCHHHHhcccC
Confidence            9999999999999999999999999999999998765             67789999999998 5799999999996

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=3.4e-36  Score=269.10  Aligned_cols=232  Identities=24%  Similarity=0.202  Sum_probs=185.1

Q ss_pred             hhhhcCCCHHHHHHHcCcHHHHHHHHHcCCC---CCCcCcCCCCHHHHHHHcCCHHHHHHHHHhCCCCccccCCCCCcHH
Q psy12891        313 ILTLRKQTPLHLAAEAGQLQVCKLLLDLGAS---IDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCA  389 (567)
Q Consensus       313 ~~~~~~~t~L~~a~~~~~~~~v~~Ll~~g~~---~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~l  389 (567)
                      ..+.+|.||||+|+++|+.+++++|+++|++   ++.++..|.||||+|+..|+.+++++|++.+++ ++..+.+|.|||
T Consensus         4 ~i~~~G~t~Lh~A~~~~~~~~v~~Ll~~~a~~~~i~~~~~~g~TpL~~A~~~g~~~iv~~Ll~~ga~-i~~~d~~g~tpL   82 (255)
T d1oy3d_           4 YVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAG-VLVAERGGHTAL   82 (255)
T ss_dssp             CCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-SSCCCTTSCCHH
T ss_pred             cCCcCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCcCCCCCCccchHHhhccccccccccccccc-ccccccccchhh
Confidence            3467899999999999999999999999998   566788999999999999999999999999877 678899999999


Q ss_pred             HHHHHcCCHHHHHHHHhcCCCcccccC-------CCCCCCCHHHHHH---HcC-cHHHHHHHHHcCCCCCCccCcCCcHH
Q psy12891        390 HIAAMQGSVGVIEELMKFDRSGVISAR-------NRVTEATPLQLAA---EGG-HANVVRVLVKAGASCTDENKTGFTAV  458 (567)
Q Consensus       390 ~~a~~~~~~~~~~~ll~~~~~~~~~~~-------~~~~~~t~L~~A~---~~~-~~~~v~~Ll~~g~~~~~~~~~g~t~l  458 (567)
                      ++|+..++.+++++|++..........       ......+.+..+.   ... .......+...+.+++.++..|.|||
T Consensus        83 ~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~g~TpL  162 (255)
T d1oy3d_          83 HLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPL  162 (255)
T ss_dssp             HHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCCHH
T ss_pred             hhhhccCchHHHHHHHhhccchhcccchhhhhHHhhhcccchHHHHHHHhhcchhHHHHHHhhhcCcccccccccCcccc
Confidence            999999999999999886543221110       0001111111111   111 11222233345778888999999999


Q ss_pred             HHHHHcCcHHHHHHHHhcccccccc-cccCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcccccccCCCCCCCHH
Q psy12891        459 HLAAQNGHNQVLEEMRSSKALNVYS-KKLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPL  537 (567)
Q Consensus       459 ~~A~~~~~~~~v~~Ll~~~~~~~~~-~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l  537 (567)
                      |+|+..++.+++++|++.+++.+.. +..|.||||+|+..++.+++++|++++.+.             +.+|..|.|||
T Consensus       163 h~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~TpL~~A~~~~~~~~v~~Ll~~gadi-------------n~~d~~g~t~L  229 (255)
T d1oy3d_         163 HVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADP-------------TARMYGGRTPL  229 (255)
T ss_dssp             HHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-------------TCCCTTSCCHH
T ss_pred             cccccccccccccchhcccccccccccccccccccccccccHHHHHHHHHHCCCCC-------------CCCCCCCCCHH
Confidence            9999999999999999999987754 678999999999999999999999987654             66789999999


Q ss_pred             HHHHHcCCHHHHHHHHhccCCc
Q psy12891        538 HLAAYSGNENVVRLLLNSAGVQ  559 (567)
Q Consensus       538 ~~A~~~~~~~~v~~Ll~~~g~~  559 (567)
                      |+|+++++.+++++|+++ ||+
T Consensus       230 ~~A~~~~~~~i~~~Ll~~-Ga~  250 (255)
T d1oy3d_         230 GSALLRPNPILARLLRAH-GAP  250 (255)
T ss_dssp             HHHHTSSCHHHHHHHHHT-TCC
T ss_pred             HHHHHCCCHHHHHHHHHc-CCC
Confidence            999999999999999997 996

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=3.4e-35  Score=262.55  Aligned_cols=237  Identities=25%  Similarity=0.207  Sum_probs=179.2

Q ss_pred             hcCCCCCChHHHHHHhcCcHHHHHHHHhCCCCCCccCCCCCCHHHHHHHcCCeeeeccccccccccccCCCCCCCCCCCc
Q psy12891        223 NKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVSSGKSLKHSVMSFRLPPHNIIPNGF  302 (567)
Q Consensus       223 ~~~~~~~~~~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  302 (567)
                      ..-+..|.||||+|+..|+.+++++|+++|+++...                                            
T Consensus         3 ~~i~~~G~t~Lh~A~~~~~~~~v~~Ll~~~a~~~~i--------------------------------------------   38 (255)
T d1oy3d_           3 GYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYL--------------------------------------------   38 (255)
T ss_dssp             CCCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGG--------------------------------------------
T ss_pred             ccCCcCCCCHHHHHHHcCCHHHHHHHHHcCCCcccc--------------------------------------------
Confidence            345677999999999999999999999988775422                                            


Q ss_pred             cccchhhhhhhhhhcCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCcCCCCHHHHHHHcCCHHHHHHHHHhCCCCccccC
Q psy12891        303 LVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATT  382 (567)
Q Consensus       303 ll~~~~~~~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~  382 (567)
                               +..+..|.||||+|+..|+.+++++|+++|++++..|..|.|||++|+..++.+++++|++..........
T Consensus        39 ---------~~~~~~g~TpL~~A~~~g~~~iv~~Ll~~ga~i~~~d~~g~tpL~~A~~~~~~~~~~~Ll~~~~~~~~~~~  109 (255)
T d1oy3d_          39 ---------DLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDAS  109 (255)
T ss_dssp             ---------GCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTSCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC-
T ss_pred             ---------cCcCCCCCCccchHHhhcccccccccccccccccccccccchhhhhhhccCchHHHHHHHhhccchhcccc
Confidence                     22345567788888888899999999999999999999999999999999999999999876543211111


Q ss_pred             CCCC---------cHHHHHHHcCCHHHHHHHHh-cCCCcccccCCCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCC-cc
Q psy12891        383 KDGN---------TCAHIAAMQGSVGVIEELMK-FDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTD-EN  451 (567)
Q Consensus       383 ~~~~---------~~l~~a~~~~~~~~~~~ll~-~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~-~~  451 (567)
                      ....         +....+.............. ...........+..|.||||+|+..++.+++++|+++|++++. .+
T Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~~~~~~~~~~  189 (255)
T d1oy3d_         110 DTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEP  189 (255)
T ss_dssp             ----------------------------------CCCGGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCT
T ss_pred             hhhhhHHhhhcccchHHHHHHHhhcchhHHHHHHhhhcCcccccccccCcccccccccccccccccchhccccccccccc
Confidence            1100         00001110000000000000 0111223345667899999999999999999999999999886 46


Q ss_pred             CcCCcHHHHHHHcCcHHHHHHHHhcccccccccccCCcHHHHHHHcCCHHHHHHHHhcCCC
Q psy12891        452 KTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLGVTALHVAAYFGQADTVRELLSHVPG  512 (567)
Q Consensus       452 ~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~  512 (567)
                      ..|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..++.+++++|+++|+.
T Consensus       190 ~~g~TpL~~A~~~~~~~~v~~Ll~~gadin~~d~~g~t~L~~A~~~~~~~i~~~Ll~~Ga~  250 (255)
T d1oy3d_         190 TCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGAP  250 (255)
T ss_dssp             TTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHTSSCHHHHHHHHHTTCC
T ss_pred             ccccccccccccccHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCC
Confidence            7899999999999999999999999999999999999999999999999999999999885

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.6e-35  Score=253.22  Aligned_cols=220  Identities=24%  Similarity=0.271  Sum_probs=204.5

Q ss_pred             CCCHHHHHHHcCCeeeeccccccccccccCCCCCCCCCCCccccchhhhhhhhhhcCCCHHHHHHHcCcHHHHHHHHHcC
Q psy12891        262 GRSALHLAAEHGYLKVSSGKSLKHSVMSFRLPPHNIIPNGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLG  341 (567)
Q Consensus       262 ~~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~~g  341 (567)
                      +.++++.++..|+.+.++                      .++...+..++..|..|+||||+|+..|+.+++++|++.+
T Consensus         3 ~~~~~~~~a~~G~~~~v~----------------------~~l~~~~~~~~~~D~~G~TpLh~Aa~~g~~e~~~~l~~~~   60 (223)
T d1uoha_           3 SNLMVCNLAYSGKLEELK----------------------ESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLG   60 (223)
T ss_dssp             SSSHHHHHHHTTCHHHHH----------------------HHHHHCGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHHT
T ss_pred             CHHHHHHHHHhCCHHHHH----------------------HHHHhCCCcCcCcCCCCCCHHHHHHHhhhhcccccccccc
Confidence            356788889999988876                      4777888899999999999999999999999999999999


Q ss_pred             CCCCCcCcCCCCHHHHHHHcCCHHHHHHHHHhCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCC
Q psy12891        342 ASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTE  421 (567)
Q Consensus       342 ~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~  421 (567)
                      .+....+..+.++++.++..++.+++++|++.+.+ ++..+..|.||||+|+..++.+++++|++++.+.   ...+..|
T Consensus        61 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~Ll~~~~d-~~~~d~~g~tpL~~A~~~~~~e~~~~Ll~~g~d~---~~~~~~~  136 (223)
T d1uoha_          61 VPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQ-VNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANP---DAKDHYE  136 (223)
T ss_dssp             CCSCCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCT---TCCCTTS
T ss_pred             cccccccccccccccccccccccchhHHHhccCce-eEeeCCCCCchhhHHHHcCCHHHHHHHHHCCCCC---CCcCCCC
Confidence            99999999999999999999999999999999876 6889999999999999999999999999988764   3445688


Q ss_pred             CCHHHHHHHcCcHHHHHHHHHcCCCCCCccCcCCcHHHHHHHcCcHHHHHHHHhcccccccccccCCcHHHHHHHcCCHH
Q psy12891        422 ATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLGVTALHVAAYFGQAD  501 (567)
Q Consensus       422 ~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~  501 (567)
                      .||||+|+..++.+++++|++.|++++..|..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+| ..|+.+
T Consensus       137 ~t~L~~a~~~~~~~~~~~L~~~~~~i~~~d~~g~TpL~~Aa~~g~~~~v~~LL~~Gad~~~~d~~g~tpl~~A-~~~~~~  215 (223)
T d1uoha_         137 ATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGASIYIENKEEKTPLQVA-KGGLGL  215 (223)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHC-CTTHHH
T ss_pred             CccchhhhhcCCcchhhhhccccceeeeccCCCCceeccccccCcHHHHHHHHHCCCCCCCCCCCCCCHHHHH-HCCCHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999998 479999


Q ss_pred             HHHHHHh
Q psy12891        502 TVRELLS  508 (567)
Q Consensus       502 ~~~~Ll~  508 (567)
                      ++++|++
T Consensus       216 i~~~Ll~  222 (223)
T d1uoha_         216 ILKRMVE  222 (223)
T ss_dssp             HHHHHHC
T ss_pred             HHhcccC
Confidence            9999986

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9.2e-34  Score=257.99  Aligned_cols=275  Identities=26%  Similarity=0.339  Sum_probs=217.0

Q ss_pred             CCChHHHHHHHhCCHHHHHHHHHcCCCCCCCC-CCCCChhHHHHhcCchhHHHHHHHhhhhhhhhHHhhhhccccccccc
Q psy12891         69 DGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKN-KIGETPLHLASRNCKAEVVDLLIQFVQNISQEKVLEYVNSVNEDGAS  147 (567)
Q Consensus        69 ~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~-~~g~t~L~~A~~~~~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~t  147 (567)
                      ++.|+|+.|++.|+.++|++|+++|++++.++ ..|+||||+|+..|+.+++++|++.+..         ....+..+.+
T Consensus         4 ~~~~~L~~Ai~~~~~e~vk~Ll~~G~din~~~~~~g~tpL~~A~~~~~~eiv~~L~~~~~~---------~~~~~~~~~~   74 (285)
T d1wdya_           4 EDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGAD---------PVLRKKNGAT   74 (285)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCC---------TTCCCTTCCC
T ss_pred             CCcHHHHHHHHcCCHHHHHHHHHCCCCcCccCCCCCCCHHHHHHHcCCHHHhhhhcccccc---------ccccccccch
Confidence            35689999999999999999999999998665 4689999999999999999999998876         5666778889


Q ss_pred             HHHHHHHhCCcccccccccccHHHHHHHHHcCCCccccccCCCccHHHHHHhcCCHHHHHHHHHhccCcch----hhhhh
Q psy12891        148 ALHYACQVTKAELIPITSKEDQKTVKLLLEAGADVSLQTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEI----SKALN  223 (567)
Q Consensus       148 ~L~~a~~~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~----~~~~~  223 (567)
                      |.+++...           +..+...++++...+.... ...+.+++++|+..++...+..++........    .....
T Consensus        75 ~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  142 (285)
T d1wdya_          75 PFLLAAIA-----------GSVKLLKLFLSKGADVNEC-DFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQE  142 (285)
T ss_dssp             HHHHHHHH-----------TCHHHHHHHHHTTCCTTCB-CTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHH
T ss_pred             hhHHHhhc-----------CCccccchhhhhccccccc-ccCCCchhHHHHHhcchhhhhhhhhhcccccccccchhhhh
Confidence            99998874           4555678888877665443 34458899999999999999988887554322    12234


Q ss_pred             cCCCCCChHHHHHHhcCcHHHHHHHHhC-CCCCCccCCCCCCHHHHHHHcCCeeeeccccccccccccCCCCCCCCCCCc
Q psy12891        224 KQTSIGWTPLLIACNRGHMELVNTMLNN-HARVDVFDQEGRSALHLAAEHGYLKVSSGKSLKHSVMSFRLPPHNIIPNGF  302 (567)
Q Consensus       224 ~~~~~~~~~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  302 (567)
                      .....|.||||+|+..|+.+++++|+++ |++++..+..+.++...+...+                             
T Consensus       143 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~i~~~~~~~~~~~~~~~~~~-----------------------------  193 (285)
T d1wdya_         143 RLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSS-----------------------------  193 (285)
T ss_dssp             HTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCS-----------------------------
T ss_pred             hhcccCchHHHHHHHcCCHHHHHHHHhccCCCcccccCCCCcccccccccc-----------------------------
Confidence            4567789999999999999999999975 8899988888888776654432                             


Q ss_pred             cccchhhhhhhhhhcCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCcCCCCHHHHHHHcCCHHHHHHHHHhCCCCccccC
Q psy12891        303 LVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATT  382 (567)
Q Consensus       303 ll~~~~~~~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~  382 (567)
                                             ...+..+++++|+++|++++.++..|.||||.|++.++.+++++|++..+..++.. 
T Consensus       194 -----------------------~~~~~~~i~~~Li~~ga~~n~~~~~g~t~L~~a~~~~~~~~v~~lL~~~g~din~~-  249 (285)
T d1wdya_         194 -----------------------DDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDT-  249 (285)
T ss_dssp             -----------------------CTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHHSSSCCTTCC-
T ss_pred             -----------------------cchHHHHHHHHHHHCCCCCCccCCCCCCccchhhhcCcHHHHHHHHHcCCCCCcCC-
Confidence                                   12345679999999999999999999999999999999999998888644433332 


Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCccC
Q psy12891        383 KDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENK  452 (567)
Q Consensus       383 ~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~  452 (567)
                                                         +..|.||||+|++.|+.+++++|+++||++|.+|.
T Consensus       250 -----------------------------------d~~G~TpL~~A~~~~~~eiv~~Ll~~GAd~n~~d~  284 (285)
T d1wdya_         250 -----------------------------------DSDGKTALLLAVELKLKKIAELLCKRGASTDCGDL  284 (285)
T ss_dssp             -----------------------------------CTTSCCHHHHHHHTTCHHHHHHHHHHSSCSCCSSC
T ss_pred             -----------------------------------CCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcccC
Confidence                                               33566778888888888888888888888887763

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3.9e-34  Score=251.11  Aligned_cols=223  Identities=23%  Similarity=0.250  Sum_probs=199.5

Q ss_pred             CCHHHHHHHcCcHHHHHHHHHc-CCCCCCcCcCCCCHHHHHHHcCCHHHHHHHHHhCCCC--ccccCCCCCcHHHHHHHc
Q psy12891        319 QTPLHLAAEAGQLQVCKLLLDL-GASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSL--VTATTKDGNTCAHIAAMQ  395 (567)
Q Consensus       319 ~t~L~~a~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~--~~~~~~~~~~~l~~a~~~  395 (567)
                      ++|||+|+..|+.+.++.|++. +.+++.+|.+|.||||+|+..|+.+++++|++.+++.  ....+..|.+++++++..
T Consensus         1 n~pLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~   80 (229)
T d1ixva_           1 NYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSV   80 (229)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHTTCTTCCGGGCCCTTSCCHHHHHHHH
T ss_pred             CHhHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHcCCccccchhhhhhccccccccccccccccccccccc
Confidence            4899999999999999998874 6899999999999999999999999999999987653  345677899999999999


Q ss_pred             CCHHHHHHHHhcCCCcccccCCCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCccCcCCcHHHHHHHcCcHHHHHHHHh
Q psy12891        396 GSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRS  475 (567)
Q Consensus       396 ~~~~~~~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~  475 (567)
                      +..++++.++..+..... ...+..+.|+++.++..++.+++++|++.|.+++..+..|+||||+|+..|+.+++++|++
T Consensus        81 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~  159 (229)
T d1ixva_          81 GNLEVVKSLYDRPLKPDL-NKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCG  159 (229)
T ss_dssp             TCHHHHHHHHSSSSCCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHT
T ss_pred             cccccccccccccccccc-cccccccccccccccccchhhhhhhhhhhcccccccCCCCCCccchhhhcccccccccccc
Confidence            999999999987765433 3344477899999999999999999999999999999999999999999999999999999


Q ss_pred             cc-cccccccccCCcHHHHHHHcCCHHHHHHHHhc-CCCCCCCCCCCCcccccccCCCCCCCHHHHHHHcCCHHHHHHHH
Q psy12891        476 SK-ALNVYSKKLGVTALHVAAYFGQADTVRELLSH-VPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVRLLL  553 (567)
Q Consensus       476 ~~-~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~-~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll  553 (567)
                      .+ .+++.+|..|+||||+|+..|+.+++++|+++ +.+.             +.+|..|.||||+|+   +.+++++|+
T Consensus       160 ~~~~~in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~~gad~-------------~~~d~~g~t~l~~A~---~~~~~~~Ll  223 (229)
T d1ixva_         160 LGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEY-------------DLVDNKGAKAEDVAL---NEQVKKFFL  223 (229)
T ss_dssp             TTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCS-------------CCCCTTSCCTGGGCS---CHHHHHHHH
T ss_pred             cccccccccccccCCchhhhcccccHHHHHHHHHhcCCCC-------------CCcCCCCCCHHHHHh---hHHHHHHHH
Confidence            97 57788999999999999999999999999975 5543             667899999999998   468999999


Q ss_pred             hccCCc
Q psy12891        554 NSAGVQ  559 (567)
Q Consensus       554 ~~~g~~  559 (567)
                      ++ |+|
T Consensus       224 ~~-g~d  228 (229)
T d1ixva_         224 NN-VVD  228 (229)
T ss_dssp             HH-CCC
T ss_pred             Hc-CCC
Confidence            97 987

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=100.00  E-value=5.8e-34  Score=258.17  Aligned_cols=247  Identities=24%  Similarity=0.325  Sum_probs=193.0

Q ss_pred             ccCCCCCChhhHHhhcCChhHHHHHHhhcCCCCChhhhHhhhcCchHHHHHHHhcCCCCCCCCCCCChHHHHHHHhCCHH
Q psy12891          5 NSGKLRETPLHIAARVKDGDRCALMLLKSGAGPNLTNIAARVKDGDRCALMLLKSGAGPNLTTDDGQTPVHAAAKYGNLV   84 (567)
Q Consensus         5 ~~~~~~~t~L~~A~~~g~~~~v~~~L~~~g~~~~~~~~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~   84 (567)
                      ..+..|+||||+||..|+.+.|.. |+.                  ...+.+++.|+|||.+|.+|+||||+|+..|+.+
T Consensus        28 ~~~~~g~T~Lh~A~~~g~~~~v~~-Ll~------------------~~~~~~l~~Gadvn~~d~~G~TpLh~A~~~g~~~   88 (277)
T d2fo1e1          28 IDPRHNRTVLHWIASNSSAEKSED-LIV------------------HEAKECIAAGADVNAMDCDENTPLMLAVLARRRR   88 (277)
T ss_dssp             CCCSSCCCHHHHHHCTTCCSCCTT-HHH------------------HHHHHHHHTCCCTTCCCTTSCCHHHHHHHHTCHH
T ss_pred             CCCCCCccHHHHHHHcCCHHHHHH-HHh------------------cchhHHHHcCCCccccCCCCCeeecccccccccc
Confidence            445679999999999999995544 432                  3456788999999999999999999999999999


Q ss_pred             HHHHHHHcCCCCCCCCCCCCChhHHHHhcCchhHHHHHHHhhhhhhhhHHhhhhcccccccccHHHHHHHhCCccccccc
Q psy12891         85 TLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVVDLLIQFVQNISQEKVLEYVNSVNEDGASALHYACQVTKAELIPIT  164 (567)
Q Consensus        85 ~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~  164 (567)
                      +|++|+++|++++.++..|.|||++|+..++.++++++...+...      ..++..+..+.++.+.+......+     
T Consensus        89 iv~~Ll~~Gad~n~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~-----  157 (277)
T d2fo1e1          89 LVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLK------GDIEELDRNGMTALMIVAHNEGRD-----  157 (277)
T ss_dssp             HHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHH------HTTSCCCTTSCCHHHHHHHSCSTT-----
T ss_pred             ccccccccccccccccccccccccchhhhcchhhhhhhhhccccc------ccccccccccchhHHHHHhccccc-----
Confidence            999999999999999999999999999999999999998765432      235667788888888887654322     


Q ss_pred             ccccHHHHHHHHHcCCCccccccCCCccHHHHHHhcCCHHHHHHHHHhccCcchhhhhhcCCCCCChHHHHHHhcCcHHH
Q psy12891        165 SKEDQKTVKLLLEAGADVSLQTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIACNRGHMEL  244 (567)
Q Consensus       165 ~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~L~~A~~~~~~~~  244 (567)
                         ....+..+.+........                                ........+..|.||||+++..++.++
T Consensus       158 ---~~~~~~~~~~~~~~~~~~--------------------------------~~~~~~~~~~~g~t~L~~~~~~~~~~~  202 (277)
T d2fo1e1         158 ---QVASAKLLVEKGAKVDYD--------------------------------GAARKDSEKYKGRTALHYAAQVSNMPI  202 (277)
T ss_dssp             ---HHHHHHHHHHHTCCSSCC--------------------------------SGGGTSSSSCCCCCTHHHHHSSCCHHH
T ss_pred             ---cccccccccccccccccc--------------------------------ccccccccccCCCCccccccccccccc
Confidence               233344444443222111                                011124456778899999999999988


Q ss_pred             HHHHH-hCCCCCCccCCCCCCHHHHHHHcCCeeeeccccccccccccCCCCCCCCCCCccccchhhhhhhhhhcCCCHHH
Q psy12891        245 VNTML-NNHARVDVFDQEGRSALHLAAEHGYLKVSSGKSLKHSVMSFRLPPHNIIPNGFLVHDHAAVIDILTLRKQTPLH  323 (567)
Q Consensus       245 v~~Ll-~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~L~  323 (567)
                      +++++ ..+.+.+..|..                                                        |.||||
T Consensus       203 ~~~~l~~~~~~~~~~d~~--------------------------------------------------------g~tpL~  226 (277)
T d2fo1e1         203 VKYLVGEKGSNKDKQDED--------------------------------------------------------GKTPIM  226 (277)
T ss_dssp             HHHHHHHSCCCTTCCCTT--------------------------------------------------------CCCHHH
T ss_pred             cccccccccccccccCCC--------------------------------------------------------CCCHHH
Confidence            88755 456665555544                                                        456667


Q ss_pred             HHHHcCcHHHHHHHHHcCCCCCCcCcCCCCHHHHHHHcCCHHHHHHHHH
Q psy12891        324 LAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLR  372 (567)
Q Consensus       324 ~a~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~  372 (567)
                      +|+..|+.+++++|+++|++++.+|..|.||||+|++.|+.+++++|++
T Consensus       227 ~A~~~g~~~iv~~Ll~~gadin~~d~~G~T~L~~A~~~~~~~iv~lL~~  275 (277)
T d2fo1e1         227 LAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNHHNIVDIFDR  275 (277)
T ss_dssp             HHHHHTCHHHHHHHHHTTCCSSCCCSSSCCHHHHHHHTTCHHHHHHHHT
T ss_pred             HHHHcCCHHHHHHHHHCcCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            7777788999999999999999999999999999999999999998875

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=100.00  E-value=1.3e-33  Score=255.92  Aligned_cols=225  Identities=20%  Similarity=0.220  Sum_probs=192.0

Q ss_pred             hcCCCHHHHHHHcCcHHHHHHH--------HHcCCCCCCcCcCCCCHHHHHHHcCCHHHHHHHHHhCCCCccccCCCCCc
Q psy12891        316 LRKQTPLHLAAEAGQLQVCKLL--------LDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNT  387 (567)
Q Consensus       316 ~~~~t~L~~a~~~~~~~~v~~L--------l~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~  387 (567)
                      ..|+||||+|+.+|+.+++++|        ++.|+|+|.+|..|.||||+|+..|+.+++++|++++++ ++..+..|.|
T Consensus        31 ~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~l~~Gadvn~~d~~G~TpLh~A~~~g~~~iv~~Ll~~Gad-~n~~~~~g~t  109 (277)
T d2fo1e1          31 RHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGAD-PTIYNKSERS  109 (277)
T ss_dssp             SSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-SCCCCTTCCC
T ss_pred             CCCccHHHHHHHcCCHHHHHHHHhcchhHHHHcCCCccccCCCCCeeeccccccccccccccccccccc-cccccccccc
Confidence            3599999999999999887766        567999999999999999999999999999999999887 6888999999


Q ss_pred             HHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCCCCHHHHHHHcCcH---HHHHHHHHcCCC--------CCCccCcCCc
Q psy12891        388 CAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHA---NVVRVLVKAGAS--------CTDENKTGFT  456 (567)
Q Consensus       388 ~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~~~~---~~v~~Ll~~g~~--------~~~~~~~g~t  456 (567)
                      |++.|+..++.++++++.............+..+.++.+.+...+..   ..+..+.+....        .+..+..|.|
T Consensus       110 ~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t  189 (277)
T d2fo1e1         110 ALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRT  189 (277)
T ss_dssp             HHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCC
T ss_pred             cccchhhhcchhhhhhhhhcccccccccccccccchhHHHHHhcccccccccccccccccccccccccccccccccCCCC
Confidence            99999999999999999876544334445556778999998887654   355555554322        3346678999


Q ss_pred             HHHHHHHcCcHHHHHHHH-hcccccccccccCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcccccccCCCCCCC
Q psy12891        457 AVHLAAQNGHNQVLEEMR-SSKALNVYSKKLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMT  535 (567)
Q Consensus       457 ~l~~A~~~~~~~~v~~Ll-~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~g~t  535 (567)
                      |||+++..++.+++++++ ..+.+.+.+|..|+||||+|+..|+.+++++|++++++.             +.+|..|.|
T Consensus       190 ~L~~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~tpL~~A~~~g~~~iv~~Ll~~gadi-------------n~~d~~G~T  256 (277)
T d2fo1e1         190 ALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASV-------------EAVDATDHT  256 (277)
T ss_dssp             THHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCS-------------SCCCSSSCC
T ss_pred             ccccccccccccccccccccccccccccCCCCCCHHHHHHHcCCHHHHHHHHHCcCCC-------------CCcCCCCCC
Confidence            999999999999998755 667788889999999999999999999999999998764             667899999


Q ss_pred             HHHHHHHcCCHHHHHHHHh
Q psy12891        536 PLHLAAYSGNENVVRLLLN  554 (567)
Q Consensus       536 ~l~~A~~~~~~~~v~~Ll~  554 (567)
                      |||+|+++|+.+||++|++
T Consensus       257 ~L~~A~~~~~~~iv~lL~~  275 (277)
T d2fo1e1         257 ARQLAQANNHHNIVDIFDR  275 (277)
T ss_dssp             HHHHHHHTTCHHHHHHHHT
T ss_pred             HHHHHHHcCCHHHHHHHHH
Confidence            9999999999999999985

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=100.00  E-value=1.3e-33  Score=257.53  Aligned_cols=243  Identities=23%  Similarity=0.306  Sum_probs=184.5

Q ss_pred             CccHHHHHHhcCCHHHHHHHHHhccCcchhhhhhcCCCCCChHHHHHHhcCcHHHHHHHHhCCCCCCccCCCCCCHHHHH
Q psy12891        190 HETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLA  269 (567)
Q Consensus       190 ~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a  269 (567)
                      +.|+|+.||..|+.+++++|++.|++.      +.++..|.||||+|+..|+.+++++|+++|.+....+.         
T Consensus        40 ~~t~l~~A~~~G~~~~v~~Ll~~Gadv------n~~d~~G~T~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~---------  104 (291)
T d1s70b_          40 DGAVFLAACSSGDTEEVLRLLERGADI------NYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDN---------  104 (291)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHCCCT------TCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCT---------
T ss_pred             CchHHHHHHHcCCHHHHHHHHHCCCCC------CccCCCCCcHHHHHHhcCCceeeeeecccccccccccc---------
Confidence            357777777778888887777776543      56677777788888777777777777777766554433         


Q ss_pred             HHcCCeeeeccccccccccccCCCCCCCCCCCccccchhhhhhhhhhcCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCc
Q psy12891        270 AEHGYLKVSSGKSLKHSVMSFRLPPHNIIPNGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDD  349 (567)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~  349 (567)
                                                                     .+.+||+.++..++.+++++|+++|+..+..+.
T Consensus       105 -----------------------------------------------~~~~~L~~a~~~~~~~~~~~l~~~~~~~~~~~~  137 (291)
T d1s70b_         105 -----------------------------------------------EGWIPLHAAASCGYLDIAEYLISQGAHVGAVNS  137 (291)
T ss_dssp             -----------------------------------------------TSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCT
T ss_pred             -----------------------------------------------cccccccccccccccchhhcccccCcccccccc
Confidence                                                           345677777778889999999999999999999


Q ss_pred             CCCCHHHHHHHcCCHHHHHHHHHhCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCCCCHHHHHH
Q psy12891        350 QGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAA  429 (567)
Q Consensus       350 ~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~t~L~~A~  429 (567)
                      .+.+++++|+..+..+.++.++...+..........       ...........+....   .........|.||||.|+
T Consensus       138 ~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~---~~~~~~~~~g~t~L~~a~  207 (291)
T d1s70b_         138 EGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEE-------ERIMLRDARQWLNSGH---INDVRHAKSGGTALHVAA  207 (291)
T ss_dssp             TSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHH-------HHHHHHHHHHHHHHTC---CCCCCCTTTCCCHHHHHH
T ss_pred             cCccccccccccccchhccccccccccccccccccc-------cccccccchhhhcccc---cccccccCCCCChhhHHH
Confidence            999999999999999999988876443221111100       0001111222222211   123444557899999999


Q ss_pred             HcCcHHHHHHHHHcCCCCCCccCcCCcHHHHHHHcCcHHHHHHHHhcccccccccccCCcHHHHHHHcCCHHHHHHHHh
Q psy12891        430 EGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLGVTALHVAAYFGQADTVRELLS  508 (567)
Q Consensus       430 ~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~  508 (567)
                      ..|+.+++++|+++|+++|.++..|+||||+|+..|+.++|++|+++|++++.+|..|+||||+|++    +++++|.+
T Consensus       208 ~~~~~~~~~~Ll~~g~din~~~~~g~TpL~~A~~~g~~~iv~lLl~~Gadv~~~d~~G~TaL~~A~e----~~~~~L~~  282 (291)
T d1s70b_         208 AKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVADE----DILGYLEE  282 (291)
T ss_dssp             HHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTTTSCCS----GGGHHHHH
T ss_pred             HcCChhhhcccccceecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHH----HHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999975    46666654

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=100.00  E-value=9.9e-33  Score=251.69  Aligned_cols=244  Identities=23%  Similarity=0.240  Sum_probs=179.5

Q ss_pred             CCChHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCChhHHHHhcCchhHHHHHHHhhhhhhhhHHhhhhcccccccccH
Q psy12891         69 DGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVVDLLIQFVQNISQEKVLEYVNSVNEDGASA  148 (567)
Q Consensus        69 ~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~t~  148 (567)
                      ++.|||+.||..|+.++|++|+++|+++|.+|..|.||||+|+..|+.++|++|++++.+         ....+..+.+|
T Consensus        39 ~~~t~l~~A~~~G~~~~v~~Ll~~Gadvn~~d~~G~T~L~~A~~~g~~eiv~~Ll~~~~~---------~~~~~~~~~~~  109 (291)
T d1s70b_          39 DDGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGAN---------INQPDNEGWIP  109 (291)
T ss_dssp             CHHHHHHHHHHHTCHHHHHHHHHHCCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCC---------TTCCCTTSCCH
T ss_pred             CCchHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCcHHHHHHhcCCceeeeeecccccc---------ccccccccccc
Confidence            355999999999999999999999999999999999999999999999999999999877         46667788999


Q ss_pred             HHHHHHhCCcccccccccccHHHHHHHHHcCCCccccccCCCccHHHHHHhcCCHHHHHHHHHhccCcchhhhhhcCCCC
Q psy12891        149 LHYACQVTKAELIPITSKEDQKTVKLLLEAGADVSLQTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSI  228 (567)
Q Consensus       149 L~~a~~~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~  228 (567)
                      |++++..           ++.++++.|+++|+..+..+.. +.+++++|+..+..+.++.++........          
T Consensus       110 L~~a~~~-----------~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~a~~~~~~~~~~~ll~~~~~~~~----------  167 (291)
T d1s70b_         110 LHAAASC-----------GYLDIAEYLISQGAHVGAVNSE-GDTPLDIAEEEAMEELLQNEVNRQGVDIE----------  167 (291)
T ss_dssp             HHHHHHH-----------TCHHHHHHHHHTTCCTTCCCTT-SCCHHHHCCSHHHHHHHHHHHHHHTCCHH----------
T ss_pred             ccccccc-----------cccchhhcccccCccccccccc-Cccccccccccccchhccccccccccccc----------
Confidence            9999984           4566799999999887765444 48889999888888888888865321100          


Q ss_pred             CChHHHHHHhcCcHHHHHHHHhCCCCCCccCCCCCCHHHHHHHcCCeeeeccccccccccccCCCCCCCCCCCccccchh
Q psy12891        229 GWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVSSGKSLKHSVMSFRLPPHNIIPNGFLVHDHA  308 (567)
Q Consensus       229 ~~~~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~  308 (567)
                        .................+.....+...                                                   
T Consensus       168 --~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------------------------------  194 (291)
T d1s70b_         168 --AARKEEERIMLRDARQWLNSGHINDVR---------------------------------------------------  194 (291)
T ss_dssp             --HHHHHHHHHHHHHHHHHHHHTCCCCCC---------------------------------------------------
T ss_pred             --cccccccccccccchhhhccccccccc---------------------------------------------------
Confidence              000000000011122222222222111                                                   


Q ss_pred             hhhhhhhhcCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCcCCCCHHHHHHHcCCHHHHHHHHHhCCCCccccCCCCCcH
Q psy12891        309 AVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTC  388 (567)
Q Consensus       309 ~~~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~  388 (567)
                           .+..|.|||+.|+..|+.+++++|++.|++++.++..|.||||+|+..|+.+++++|++++++ ++.+|..|.||
T Consensus       195 -----~~~~g~t~L~~a~~~~~~~~~~~Ll~~g~din~~~~~g~TpL~~A~~~g~~~iv~lLl~~Gad-v~~~d~~G~Ta  268 (291)
T d1s70b_         195 -----HAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCD-MEAVNKVGQTA  268 (291)
T ss_dssp             -----CTTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCT
T ss_pred             -----ccCCCCChhhHHHHcCChhhhcccccceecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCC-CCCcCCCCCCH
Confidence                 123466777777788888888888888888888888888888888888888888888888776 57778888888


Q ss_pred             HHHHHHcCCHHHHHHHHh
Q psy12891        389 AHIAAMQGSVGVIEELMK  406 (567)
Q Consensus       389 l~~a~~~~~~~~~~~ll~  406 (567)
                      ||+|++    +++++|.+
T Consensus       269 L~~A~e----~~~~~L~~  282 (291)
T d1s70b_         269 FDVADE----DILGYLEE  282 (291)
T ss_dssp             TTSCCS----GGGHHHHH
T ss_pred             HHHHHH----HHHHHHHH
Confidence            888864    35555544

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.1e-31  Score=235.34  Aligned_cols=204  Identities=22%  Similarity=0.226  Sum_probs=188.7

Q ss_pred             CCHHHHHHHcCCHHHHHHHHHhCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCCCCHHHHHHHc
Q psy12891        352 QKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEG  431 (567)
Q Consensus       352 ~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~  431 (567)
                      ++|||+|+..|+.++++.|++..+..++.++.+|+||||+|+..|+.+++++|++.+++.......+..|.+|+++++..
T Consensus         1 n~pLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~   80 (229)
T d1ixva_           1 NYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSV   80 (229)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHTTCTTCCGGGCCCTTSCCHHHHHHHH
T ss_pred             CHhHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHcCCccccchhhhhhccccccccccccccccccccccc
Confidence            48999999999999999999988888999999999999999999999999999999888776677777899999999999


Q ss_pred             CcHHHHHHHHHcCCCCC--CccCcCCcHHHHHHHcCcHHHHHHHHhcccccccccccCCcHHHHHHHcCCHHHHHHHHhc
Q psy12891        432 GHANVVRVLVKAGASCT--DENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLGVTALHVAAYFGQADTVRELLSH  509 (567)
Q Consensus       432 ~~~~~v~~Ll~~g~~~~--~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~  509 (567)
                      +..++++.++..+...+  ..+..+.|+++.++..++.+++++|+..|......|..|+||||+|+..|+.+++++|++.
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~  160 (229)
T d1ixva_          81 GNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGL  160 (229)
T ss_dssp             TCHHHHHHHHSSSSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTT
T ss_pred             cccccccccccccccccccccccccccccccccccchhhhhhhhhhhcccccccCCCCCCccchhhhccccccccccccc
Confidence            99999999999887655  4678899999999999999999999999999999999999999999999999999999998


Q ss_pred             CCCCCCCCCCCCcccccccCCCCCCCHHHHHHHcCCHHHHHHHHhccCCccccccccC
Q psy12891        510 VPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVRLLLNSAGVQVDAQTQEN  567 (567)
Q Consensus       510 ~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~g~~~~~~~~~~  567 (567)
                      ++...            +..|..|.||||+|++.|+.++|++||++.|+||+++|.+|
T Consensus       161 ~~~~i------------n~~d~~g~TpLh~A~~~~~~~~v~~Ll~~~gad~~~~d~~g  206 (229)
T d1ixva_         161 GKSAV------------NWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKG  206 (229)
T ss_dssp             TCCCS------------CCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCCCCTTS
T ss_pred             ccccc------------cccccccCCchhhhcccccHHHHHHHHHhcCCCCCCcCCCC
Confidence            76544            55688999999999999999999999987899999999876

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=3.3e-31  Score=232.51  Aligned_cols=227  Identities=24%  Similarity=0.295  Sum_probs=197.3

Q ss_pred             CCCCChhhHHhhcCChhHHHHHHhhcCCCCChhhhHhhhcCchHHHHHHHhcCCCCCCCCCCCChHHHHHHHhCCHHHHH
Q psy12891          8 KLRETPLHIAARVKDGDRCALMLLKSGAGPNLTNIAARVKDGDRCALMLLKSGAGPNLTTDDGQTPVHAAAKYGNLVTLQ   87 (567)
Q Consensus         8 ~~~~t~L~~A~~~g~~~~v~~~L~~~g~~~~~~~~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~   87 (567)
                      +.|+||||+||..|+.+.|..                       +++.+.+.|+++|.+|.+|+||||+|+..|+.++++
T Consensus         1 ~dG~TpLh~A~~~g~~~~v~~-----------------------Ll~~~~~~g~~in~~d~~g~TpL~~A~~~~~~~iv~   57 (228)
T d1k1aa_           1 EDGDTPLHIAVVQGNLPAVHR-----------------------LVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVR   57 (228)
T ss_dssp             CTTCCHHHHHHHTTCHHHHHH-----------------------HHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred             CCCccHHHHHHHcCCHHHHHH-----------------------HHHHHHHCCCCCCccCCCCCccceehhccccccccc
Confidence            359999999999999996554                       345678899999999999999999999999999999


Q ss_pred             HHHHcCCCCCCCCCCCCChhHHHHhcCchhHHHHHHHhhhhhhhhHHhhhhcccccccccHHHHHHHhCCcccccccccc
Q psy12891         88 LLLEDGGDPMYKNKIGETPLHLASRNCKAEVVDLLIQFVQNISQEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKE  167 (567)
Q Consensus        88 ~Ll~~ga~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~  167 (567)
                      +|+++|++++..+..+.++++.|...++.++++.+........     ...+.......++|+.+..           ..
T Consensus        58 ~Ll~~ga~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~l~~~~~-----------~~  121 (228)
T d1k1aa_          58 LLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGT-----LDLEARNYDGLTALHVAVN-----------TE  121 (228)
T ss_dssp             HHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCTTS-----CCTTCCCTTSCCHHHHHHH-----------HT
T ss_pred             ccccccccccccccccccccccccccccccchhhhhhcccccc-----ccccccccccccccccccc-----------cc
Confidence            9999999999999999999999999999999998887654321     1234556677899999887           44


Q ss_pred             cHHHHHHHHHcCCCccccccCCCccHHHHHHhcCCHHHHHHHHHhccCcchhhhhhcCCCCCChHHHHHHhcCcHHHHHH
Q psy12891        168 DQKTVKLLLEAGADVSLQTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIACNRGHMELVNT  247 (567)
Q Consensus       168 ~~~~v~~Ll~~g~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~L~~A~~~~~~~~v~~  247 (567)
                      .....+.|.....+........+.++++.|+..+...+++.+++.+..      .+.++..|.||||+|+..|+.+++++
T Consensus       122 ~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~------~~~~d~~g~t~L~~A~~~g~~~~v~~  195 (228)
T d1k1aa_         122 CQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGAN------VNAQMYSGSSALHSASGRGLLPLVRT  195 (228)
T ss_dssp             CHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCC------TTCBCTTSCBHHHHHHHHTCHHHHHH
T ss_pred             cchhhhhhhccccccccccccchhhHHHHHHHhhhhhhhhhhhhhccc------cccccccCcchHHHHHHcCCHHHHHH
Confidence            556688888888888777777889999999999999999999998654      36778899999999999999999999


Q ss_pred             HHhCCCCCCccCCCCCCHHHHHHHcCCeeeec
Q psy12891        248 MLNNHARVDVFDQEGRSALHLAAEHGYLKVSS  279 (567)
Q Consensus       248 Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~  279 (567)
                      |+++|++++.+|..|.||||+|+++|+.++++
T Consensus       196 Ll~~Gad~n~~d~~G~TpL~~A~~~~~~divk  227 (228)
T d1k1aa_         196 LVRSGADSSLKNCHNDTPLMVARSRRVIDILR  227 (228)
T ss_dssp             HHHTTCCTTCCCTTSCCTTTTCSSHHHHHHHT
T ss_pred             HHHCCCCCCCCCCCCCCHHHHHHhCCCccccC
Confidence            99999999999999999999999988777654

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.97  E-value=1.3e-30  Score=224.88  Aligned_cols=206  Identities=26%  Similarity=0.304  Sum_probs=171.8

Q ss_pred             HHHHHHHHHcCCCCCC-cCcCCCCHHHHHHHcCCHHHHHHHHHhCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhcCC
Q psy12891        331 LQVCKLLLDLGASIDA-TDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIEELMKFDR  409 (567)
Q Consensus       331 ~~~v~~Ll~~g~~~~~-~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~  409 (567)
                      .|+|++|+++|+|++. .|.+|.||||+|++.|+.+++++|++.++. ++..+..+.++++.++..++............
T Consensus         2 ~~~v~~Ll~~g~din~~~d~~G~t~L~~A~~~g~~e~v~~Ll~~g~~-~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (209)
T d1ot8a_           2 AQVISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRLLDAGAD-ANSQDNTGRTPLHAAVAADAMGVFQILLRNRA   80 (209)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHTCTT
T ss_pred             HHHHHHHHHCCCCcCcCcCCCCCCHHHHHHHcCCHHHHHHHHhhccc-cccccccccccccccccccccccccccccccc
Confidence            4788888888888886 478888888888888888888888888776 57778888888888888888777766665443


Q ss_pred             CcccccCCCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCccCcCCcHHHHHHHcCcHHHHHHHHhcccccccccccCCc
Q psy12891        410 SGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLGVT  489 (567)
Q Consensus       410 ~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t  489 (567)
                      .  ........+.++.+.+.........+.|.++|++++.++..|+|||++|+..+..++++.|++.+.+++..|..|.|
T Consensus        81 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~T  158 (209)
T d1ot8a_          81 T--NLNARMHDGTTPLILAARLAIEGMVEDLITADADINAADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDET  158 (209)
T ss_dssp             C--CTTCCCTTCCCHHHHHHHTTCTTHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCC
T ss_pred             c--ccccccccccccccccccccchhhhhhhhhhcccccccCCCCCCcchhhcccCcceeeeeecccccccccccccccc
Confidence            3  22333346778888888888888899999999999999999999999999999999999999999999988999999


Q ss_pred             HHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcccccccCCCCCCCHHHHHHHcCCHHHHHHH
Q psy12891        490 ALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVRLL  552 (567)
Q Consensus       490 ~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~L  552 (567)
                      |||+|+..|+.+++++|++++++.             +..|..|.||||+|+++|+.+||++|
T Consensus       159 pL~~A~~~g~~~~v~~Ll~~gad~-------------n~~d~~g~Tpl~~A~~~~~~~iv~lL  208 (209)
T d1ot8a_         159 PLFLAAREGSYEASKALLDNFANR-------------EITDHMDRLPRDVASERLHHDIVRLL  208 (209)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCT-------------TCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             ccchhccccHHHHHHHHHHCCCCC-------------CCcCCCCCCHHHHHHHcCCHHHHhhc
Confidence            999999999999999999988764             55678899999999999999999986

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=8.3e-32  Score=233.98  Aligned_cols=203  Identities=25%  Similarity=0.251  Sum_probs=170.3

Q ss_pred             CCCChhhHHhhcCChhHHHHHHhhcCCCCChhhhHhhhcCchHHHHHHHhcCCCCCCCCCCCChHHHHHHHhCCHHHHHH
Q psy12891          9 LRETPLHIAARVKDGDRCALMLLKSGAGPNLTNIAARVKDGDRCALMLLKSGAGPNLTTDDGQTPVHAAAKYGNLVTLQL   88 (567)
Q Consensus         9 ~~~t~L~~A~~~g~~~~v~~~L~~~g~~~~~~~~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~   88 (567)
                      .|.||||+|+..|+.+.+..                       +++.+...|+++|.+|.+|+||||+||..|+.+++++
T Consensus         1 dG~t~Lh~A~~~g~~~~~~~-----------------------li~~~~~~~~~in~~d~~g~TpLh~A~~~~~~~iv~~   57 (221)
T d1iknd_           1 DGDSFLHLAIIHEEKALTME-----------------------VIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEA   57 (221)
T ss_dssp             CCCCTTHHHHHTTCSSSSSC-----------------------CCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHC
T ss_pred             CCChHHHHHHHcCCHHHHHH-----------------------HHHHHHhCCCCcccCCCCCCccccccccccccccccc
Confidence            48999999999999774332                       3456788999999999999999999999999999999


Q ss_pred             HHHcCCCCCCCCCCCCChhHHHHhcCchhHHHHHHHhhhhhhhhHHhhhhcccccccccHHHHHHHhCCccccccccccc
Q psy12891         89 LLEDGGDPMYKNKIGETPLHLASRNCKAEVVDLLIQFVQNISQEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKED  168 (567)
Q Consensus        89 Ll~~ga~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~  168 (567)
                      |+++|++++.+|..|.|||++|+..++.++++.|++.+......   .........|.|||+.|+..           +.
T Consensus        58 L~~~g~d~~~~d~~g~t~l~~~~~~~~~~~~~~l~~~~~~~~~~---~~~~~~~~~~~t~l~~a~~~-----------~~  123 (221)
T d1iknd_          58 LLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLH---SILKATNYNGHTCLHLASIH-----------GY  123 (221)
T ss_dssp             CCSCCCCSCCCCTTCCCHHHHHHHHTCHHHHHHHHHSTTTTSSS---CGGGCCCTTCCCHHHHHHHT-----------TC
T ss_pred             cccccccccccccccccccccccccccccccchhhhhccccccc---ccccccccccchhhhHHhhc-----------CC
Confidence            99999999999999999999999999999999999987654321   22344556688999999884           46


Q ss_pred             HHHHHHHHHcCCCccccccCCCccHHHHHHhcCCHHHHHHHHHhccCcchhhhhhcCCCCCChHHHHHHhcCcHHHHHHH
Q psy12891        169 QKTVKLLLEAGADVSLQTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIACNRGHMELVNTM  248 (567)
Q Consensus       169 ~~~v~~Ll~~g~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~L~~A~~~~~~~~v~~L  248 (567)
                      .+++++|++.|..++...+..|.||||+|+..|+.+++++|++.+.+.      +.++..|.||||+|+..++.+++++|
T Consensus       124 ~~~~~~l~~~~~~~~~~~~~~G~T~L~~A~~~g~~~~v~~Ll~~gad~------~~~~~~G~tpl~~A~~~~~~~~~~~l  197 (221)
T d1iknd_         124 LGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADV------NRVTYQGYSPYQLTWGRPSTRIQQQL  197 (221)
T ss_dssp             HHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHTTTCCS------CCCCTTCCCGGGGCTTSSCHHHHHHH
T ss_pred             hhheeeecccCcccccccccCCCCccccccccccHHHHHHHHhcCCcc------cccCCCCCCHHHHHHHCCCHHHHHHH
Confidence            677999999999998888888899999999999999999999887654      66888899999999999999999999


Q ss_pred             HhCCCC
Q psy12891        249 LNNHAR  254 (567)
Q Consensus       249 l~~g~~  254 (567)
                      ++.+.+
T Consensus       198 ~~~~~~  203 (221)
T d1iknd_         198 GQLTLE  203 (221)
T ss_dssp             HTTSCG
T ss_pred             HHcCCc
Confidence            987654

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=5.8e-31  Score=228.60  Aligned_cols=198  Identities=22%  Similarity=0.197  Sum_probs=173.6

Q ss_pred             cCCCHHHHHHHcCcH----HHHHHHHHcCCCCCCcCcCCCCHHHHHHHcCCHHHHHHHHHhCCCCccccCCCCCcHHHHH
Q psy12891        317 RKQTPLHLAAEAGQL----QVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIA  392 (567)
Q Consensus       317 ~~~t~L~~a~~~~~~----~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a  392 (567)
                      +|.||||+|+..|+.    ++++++...|+++|.+|..|+||||+|+..++.+++++|++.+++ .+..+..|.+||+.+
T Consensus         1 dG~t~Lh~A~~~g~~~~~~~li~~~~~~~~~in~~d~~g~TpLh~A~~~~~~~iv~~L~~~g~d-~~~~d~~g~t~l~~~   79 (221)
T d1iknd_           1 DGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCD-PELRDFRGNTPLHLA   79 (221)
T ss_dssp             CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCC-SCCCCTTCCCHHHHH
T ss_pred             CCChHHHHHHHcCCHHHHHHHHHHHHhCCCCcccCCCCCCcccccccccccccccccccccccc-ccccccccccccccc
Confidence            489999999999985    566777788999999999999999999999999999999999887 688899999999999


Q ss_pred             HHcCCHHHHHHHHhcCCCcc---cccCCCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcc-CcCCcHHHHHHHcCcHH
Q psy12891        393 AMQGSVGVIEELMKFDRSGV---ISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDEN-KTGFTAVHLAAQNGHNQ  468 (567)
Q Consensus       393 ~~~~~~~~~~~ll~~~~~~~---~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~-~~g~t~l~~A~~~~~~~  468 (567)
                      +..++.++++.+++.+....   ........|.|||+.|+..++.+++++|++.|+.++..+ ..|.||||+|+..|+.+
T Consensus        80 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~G~T~L~~A~~~g~~~  159 (221)
T d1iknd_          80 CEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPD  159 (221)
T ss_dssp             HHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHH
T ss_pred             cccccccccchhhhhcccccccccccccccccchhhhHHhhcCChhheeeecccCcccccccccCCCCccccccccccHH
Confidence            99999999999998754422   333444568899999999999999999999999998765 57999999999999999


Q ss_pred             HHHHHHhcccccccccccCCcHHHHHHHcCCHHHHHHHHhcCCCCCC
Q psy12891        469 VLEEMRSSKALNVYSKKLGVTALHVAAYFGQADTVRELLSHVPGTVK  515 (567)
Q Consensus       469 ~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~  515 (567)
                      ++++|+++|++++.+|..|+||||+|+..++.+++++|++.......
T Consensus       160 ~v~~Ll~~gad~~~~~~~G~tpl~~A~~~~~~~~~~~l~~~~~~~~~  206 (221)
T d1iknd_         160 LVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQ  206 (221)
T ss_dssp             HHHHHHTTTCCSCCCCTTCCCGGGGCTTSSCHHHHHHHHTTSCGGGS
T ss_pred             HHHHHHhcCCcccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCcccc
Confidence            99999999999999999999999999999999999999998665443

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.4e-29  Score=222.01  Aligned_cols=220  Identities=25%  Similarity=0.309  Sum_probs=195.9

Q ss_pred             cCCCHHHHHHHcCcHHHHHHHHH----cCCCCCCcCcCCCCHHHHHHHcCCHHHHHHHHHhCCCCccccCCCCCcHHHHH
Q psy12891        317 RKQTPLHLAAEAGQLQVCKLLLD----LGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIA  392 (567)
Q Consensus       317 ~~~t~L~~a~~~~~~~~v~~Ll~----~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a  392 (567)
                      +|.||||+|+.+|+.++++.|++    .|++++.+|..|.||||+|+..++.+++++|++.++. .+.....+.++++.|
T Consensus         2 dG~TpLh~A~~~g~~~~v~~Ll~~~~~~g~~in~~d~~g~TpL~~A~~~~~~~iv~~Ll~~ga~-~~~~~~~~~~~~~~a   80 (228)
T d1k1aa_           2 DGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGAS-PMALDRHGQTAAHLA   80 (228)
T ss_dssp             TTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHH
T ss_pred             CCccHHHHHHHcCCHHHHHHHHHHHHHCCCCCCccCCCCCccceehhccccccccccccccccc-ccccccccccccccc
Confidence            58999999999999999988874    8999999999999999999999999999999998876 677888999999999


Q ss_pred             HHcCCHHHHHHHHhcCCCcc-cccCCCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCC-CccCcCCcHHHHHHHcCcHHHH
Q psy12891        393 AMQGSVGVIEELMKFDRSGV-ISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCT-DENKTGFTAVHLAAQNGHNQVL  470 (567)
Q Consensus       393 ~~~~~~~~~~~ll~~~~~~~-~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~l~~A~~~~~~~~v  470 (567)
                      ....+.++++.+........ ..........++|+.+.........+.|.....+.. .....+.++++.|+..+...++
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~  160 (228)
T d1k1aa_          81 CEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMV  160 (228)
T ss_dssp             HHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHH
T ss_pred             cccccccchhhhhhccccccccccccccccccccccccccccchhhhhhhccccccccccccchhhHHHHHHHhhhhhhh
Confidence            99999999998876544332 233344567799999999999999999998877655 3566899999999999999999


Q ss_pred             HHHHhcccccccccccCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcccccccCCCCCCCHHHHHHHcCCHHHHH
Q psy12891        471 EEMRSSKALNVYSKKLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVR  550 (567)
Q Consensus       471 ~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~  550 (567)
                      +++++.|.....+|..|.||||+|+..|+.+++++|++++++.             +.+|..|.||||+|+++|+.++||
T Consensus       161 ~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~Gad~-------------n~~d~~G~TpL~~A~~~~~~divk  227 (228)
T d1k1aa_         161 QLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADS-------------SLKNCHNDTPLMVARSRRVIDILR  227 (228)
T ss_dssp             HHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCT-------------TCCCTTSCCTTTTCSSHHHHHHHT
T ss_pred             hhhhhhccccccccccCcchHHHHHHcCCHHHHHHHHHCCCCC-------------CCCCCCCCCHHHHHHhCCCccccC
Confidence            9999999999999999999999999999999999999998764             667899999999999999999986

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.96  E-value=1e-28  Score=212.86  Aligned_cols=201  Identities=26%  Similarity=0.298  Sum_probs=185.5

Q ss_pred             cccchhhhhhh-hhhcCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCcCCCCHHHHHHHcCCHHHHHHHHHhCCCCcccc
Q psy12891        303 LVHDHAAVIDI-LTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTAT  381 (567)
Q Consensus       303 ll~~~~~~~~~-~~~~~~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~  381 (567)
                      ++.+.|.+++. .|.+|.||||+|+..|+.+++++|++.|++++..+..+.++++.++..++..................
T Consensus         7 ~Ll~~g~din~~~d~~G~t~L~~A~~~g~~e~v~~Ll~~g~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (209)
T d1ot8a_           7 DLLAQGAELNATMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHAAVAADAMGVFQILLRNRATNLNAR   86 (209)
T ss_dssp             HHHHHHHHHHHHHHHHCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTCTTCCTTCC
T ss_pred             HHHHCCCCcCcCcCCCCCCHHHHHHHcCCHHHHHHHHhhccccccccccccccccccccccccccccccccccccccccc
Confidence            67788999987 58999999999999999999999999999999999999999999999999998888887777767777


Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCccCcCCcHHHHH
Q psy12891        382 TKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLA  461 (567)
Q Consensus       382 ~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A  461 (567)
                      ...+.++.+.+.........+.|...+.+..   ..+..|.|||++++..+..++++.|++++.+++..|..|.||||+|
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~---~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~TpL~~A  163 (209)
T d1ot8a_          87 MHDGTTPLILAARLAIEGMVEDLITADADIN---AADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPLFLA  163 (209)
T ss_dssp             CTTCCCHHHHHHHTTCTTHHHHHHHTTCCTT---CBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHH
T ss_pred             cccccccccccccccchhhhhhhhhhccccc---ccCCCCCCcchhhcccCcceeeeeeccccccccccccccccccchh
Confidence            7889999999999999999999998766532   3345788999999999999999999999999999999999999999


Q ss_pred             HHcCcHHHHHHHHhcccccccccccCCcHHHHHHHcCCHHHHHHH
Q psy12891        462 AQNGHNQVLEEMRSSKALNVYSKKLGVTALHVAAYFGQADTVREL  506 (567)
Q Consensus       462 ~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~L  506 (567)
                      +..|+.+++++|+++|++++.+|..|+||||+|++.|+.++|++|
T Consensus       164 ~~~g~~~~v~~Ll~~gad~n~~d~~g~Tpl~~A~~~~~~~iv~lL  208 (209)
T d1ot8a_         164 AREGSYEASKALLDNFANREITDHMDRLPRDVASERLHHDIVRLL  208 (209)
T ss_dssp             HHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             ccccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCHHHHhhc
Confidence            999999999999999999999999999999999999999999986

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.96  E-value=5.2e-31  Score=243.74  Aligned_cols=246  Identities=14%  Similarity=0.101  Sum_probs=135.6

Q ss_pred             CCCCCChhhHHhhcCChhHHHHHHhhcCCCCChhhhHhhhcCchHHHHHHHhcCCCCCCCCCCCChHHHHHHHhCCHHHH
Q psy12891          7 GKLRETPLHIAARVKDGDRCALMLLKSGAGPNLTNIAARVKDGDRCALMLLKSGAGPNLTTDDGQTPVHAAAKYGNLVTL   86 (567)
Q Consensus         7 ~~~~~t~L~~A~~~g~~~~v~~~L~~~g~~~~~~~~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v   86 (567)
                      +..|.||||+||..|+.+.+.                        ++++|++.|+++|.++.+|+||||+||..|+.++|
T Consensus        87 ~~~~~t~L~~Aa~~g~~~~~~------------------------~~~~L~~~~~~in~~~~~g~taL~~Aa~~G~~~~v  142 (346)
T d2ajaa1          87 GIKSEVICFVAAITGCSSALD------------------------TLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVL  142 (346)
T ss_dssp             TCCHHHHHHHHHHHCCHHHHH------------------------HHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHH
T ss_pred             cCCCCcHHHHHHHhCCHHHHH------------------------HHHHHHhCCCcccccCCCCCCHHHHHHHCCCHHHH
Confidence            455667777777777665322                        23446667777777777777777777777777777


Q ss_pred             HHHHHcCCCCCCCC--CCCCChhHHHHhcCchhHHHHHHHhhhhhhhhHHhhhhcccccccccHHHHHHHhCCccccccc
Q psy12891         87 QLLLEDGGDPMYKN--KIGETPLHLASRNCKAEVVDLLIQFVQNISQEKVLEYVNSVNEDGASALHYACQVTKAELIPIT  164 (567)
Q Consensus        87 ~~Ll~~ga~~~~~~--~~g~t~L~~A~~~~~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~  164 (567)
                      ++|+++|++++..+  ..|.||||+|+..|+.++|++|++.|+....      .+..+..+.||++.|+.          
T Consensus       143 ~~Ll~~g~~~~~~~~~~~g~t~L~~Aa~~g~~~iv~~Ll~~~~~~~~------~~~~~~~~~t~l~~A~~----------  206 (346)
T d2ajaa1         143 NRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEAT------AMIQAENYYAFRWAAVG----------  206 (346)
T ss_dssp             HHHHHSCTTTHHHHHSHHHHHHHHHHHHTTCHHHHHHHHHSCGGGHH------HHHHHHHHHHHHHHHST----------
T ss_pred             HHHHHcCCCccccccccCCCChhHHHHHHhhHHHHHHHHHcCCcccc------cccccCCCcchhhHHhh----------
Confidence            77777777766554  2466777777777777777777776654311      23333445556666654          


Q ss_pred             ccccHHHHHHHHHcCCCccccccCCCccHHHHHHhcCCHHHHHHHHHhccCcchhhhhhcCCCCCChHHHHHHhcCcHHH
Q psy12891        165 SKEDQKTVKLLLEAGADVSLQTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIACNRGHMEL  244 (567)
Q Consensus       165 ~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~L~~A~~~~~~~~  244 (567)
                       .++.+++++|++.|++++        ++.+.+...++..+                         ++++.+...+..+.
T Consensus       207 -~g~~~iv~~Ll~~ga~~~--------~~~~~~~~~~~~~~-------------------------~~~~~~~~~~~~~~  252 (346)
T d2ajaa1         207 -RGHHNVINFLLDCPVMLA--------YAEIHEFEYGEKYV-------------------------NPFIARHVNRLKEM  252 (346)
T ss_dssp             -TCCHHHHHHHTTSHHHHH--------HHHHCTTTTTTTTH-------------------------HHHHHHHHHHHHHH
T ss_pred             -cCHHHHHHHHHhCCCCcc--------hHHHHHHHcCcHhh-------------------------hHHHHHhhccchHH
Confidence             334555666666665442        22333333333332                         33333332222222


Q ss_pred             HHHHHhCCCCCCccCCCCCCHHHHHHHcCCeeeeccccccccccccCCCCCCCCCCCccccchhhhhhhhhhcCCCHHHH
Q psy12891        245 VNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVSSGKSLKHSVMSFRLPPHNIIPNGFLVHDHAAVIDILTLRKQTPLHL  324 (567)
Q Consensus       245 v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~L~~  324 (567)
                      ...+.....                  .+..++..                          .   ........+.++++.
T Consensus       253 ~~~l~~a~~------------------~~~~~~~~--------------------------~---~~~~~~~~~~~~l~~  285 (346)
T d2ajaa1         253 HDAFKLSNP------------------DGVFDLVT--------------------------K---SECLQGFYMLRNLIR  285 (346)
T ss_dssp             HTTTTTTSS------------------SSCCCCSS--------------------------H---HHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcc------------------cccHhHHh--------------------------c---ccccccchhhhHHHH
Confidence            222211111                  11111100                          0   011112233467888


Q ss_pred             HHHcCcHHHHHHHHHcCCC-----CCCcCcCCCCHHHHHHHcCCHHHHHHHHHh
Q psy12891        325 AAEAGQLQVCKLLLDLGAS-----IDATDDQGQKPIHVAAQNNFPEVAQIFLRA  373 (567)
Q Consensus       325 a~~~~~~~~v~~Ll~~g~~-----~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~  373 (567)
                      ++..+..+++++|++.+..     .+..+..|+||||+|++.|+.+++++|++.
T Consensus       286 a~~~~~ld~v~~Ll~~~~~~~~~~~~~~~~~g~T~LhlA~~~Gn~e~v~lLL~~  339 (346)
T d2ajaa1         286 RNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLLSI  339 (346)
T ss_dssp             HCCGGGHHHHHHHHTSTTTGGGSSCCSSTTCCCHHHHHHHHHTCTTHHHHHTTS
T ss_pred             HhcCChHHHHHHHHhCcChhhhcccccCCCCCCcHHHHHHHcCcHHHHHHHhCC
Confidence            8888999999999987654     233445677888888888888888888753

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.95  E-value=9.3e-31  Score=242.06  Aligned_cols=241  Identities=15%  Similarity=0.075  Sum_probs=180.4

Q ss_pred             chhhhhhhhhhcCCCHHHHHHHcCcHHHHHH---HHHcCCCCCCcCcCCCCHHHHHHHcCCHHHHHHHHHhCCCCcccc-
Q psy12891        306 DHAAVIDILTLRKQTPLHLAAEAGQLQVCKL---LLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTAT-  381 (567)
Q Consensus       306 ~~~~~~~~~~~~~~t~L~~a~~~~~~~~v~~---Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~-  381 (567)
                      .....+...+..|.|||++|+.+|+.+++++   |++.|++++..+..|.||||+|+++|+.+++++|++.+++. +.. 
T Consensus        78 ~~~~~~~~~~~~~~t~L~~Aa~~g~~~~~~~~~~L~~~~~~in~~~~~g~taL~~Aa~~G~~~~v~~Ll~~g~~~-~~~~  156 (346)
T d2ajaa1          78 QLWSDAHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTE-IMAM  156 (346)
T ss_dssp             THHHHHHHHTCCHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTT-HHHH
T ss_pred             hhhhHHHhccCCCCcHHHHHHHhCCHHHHHHHHHHHhCCCcccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCc-cccc
Confidence            3455667778889999999999999877665   78999999999999999999999999999999999998874 333 


Q ss_pred             -CCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcc-------Cc
Q psy12891        382 -TKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDEN-------KT  453 (567)
Q Consensus       382 -~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~-------~~  453 (567)
                       +.+|.||||+|+..|+.+++++|++.++...........+.||++.|+..|+.+++++|+++|++++..+       ..
T Consensus       157 ~~~~g~t~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~  236 (346)
T d2ajaa1         157 IQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEK  236 (346)
T ss_dssp             HSHHHHHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHHHHHHHHHCTTTTTTT
T ss_pred             cccCCCChhHHHHHHhhHHHHHHHHHcCCcccccccccCCCcchhhHHhhcCHHHHHHHHHhCCCCcchHHHHHHHcCcH
Confidence             3568999999999999999999999887654333333345688888999999999999999998776432       22


Q ss_pred             CCcHHHHHHHcCcHHHHHHHHhcccc--cccc-------cccCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCccc
Q psy12891        454 GFTAVHLAAQNGHNQVLEEMRSSKAL--NVYS-------KKLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASF  524 (567)
Q Consensus       454 g~t~l~~A~~~~~~~~v~~Ll~~~~~--~~~~-------~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~  524 (567)
                      +.++++.+...+..++...+......  .+..       ...+.++++.|+..++.+++++|++.+.......       
T Consensus       237 ~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~ld~v~~Ll~~~~~~~~~~-------  309 (346)
T d2ajaa1         237 YVNPFIARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAP-------  309 (346)
T ss_dssp             THHHHHHHHHHHHHHHHTTTTTTSSSSCCCCSSHHHHHHHHHHHHHHHHHCCGGGHHHHHHHHTSTTTGGGSS-------
T ss_pred             hhhHHHHHhhccchHHHHHHHHhcccccHhHHhcccccccchhhhHHHHHhcCChHHHHHHHHhCcChhhhcc-------
Confidence            33556665555555554444433221  1111       1234578899999999999999998765332111       


Q ss_pred             ccccCCCCCCCHHHHHHHcCCHHHHHHHHhc
Q psy12891        525 LGELGSESGMTPLHLAAYSGNENVVRLLLNS  555 (567)
Q Consensus       525 ~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~  555 (567)
                       ....+..|.||||+|++.||.++|++||+-
T Consensus       310 -~~~~~~~g~T~LhlA~~~Gn~e~v~lLL~~  339 (346)
T d2ajaa1         310 -TATIPGDANELLRLALRLGNQGACALLLSI  339 (346)
T ss_dssp             -CCSSTTCCCHHHHHHHHHTCTTHHHHHTTS
T ss_pred             -cccCCCCCCcHHHHHHHcCcHHHHHHHhCC
Confidence             133456789999999999999999999974

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=1.7e-26  Score=188.24  Aligned_cols=154  Identities=26%  Similarity=0.301  Sum_probs=138.8

Q ss_pred             cHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCccCcCCcHHHHHHHcCc
Q psy12891        387 TCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGH  466 (567)
Q Consensus       387 ~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~  466 (567)
                      ++||.|+..|+.+++++|++.+.+.   +..+..|.||||+|+ .|+.+++++|+++|++++..+..|.++++.++..+.
T Consensus         3 ~~Lh~Aa~~g~~~~v~~Ll~~g~d~---n~~d~~g~TpL~~A~-~~~~ei~~~Ll~~~a~~~~~~~~~~~~l~~~~~~~~   78 (156)
T d1ihba_           3 NELASAAARGDLEQLTSLLQNNVNV---NAQNGFGRTALQVMK-LGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGF   78 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHTTSCCCT---TCCCTTSCCHHHHCC-SSCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTC
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCc---CccCCcccccccccc-cccccccccccccccccccccccCcccccccccccc
Confidence            6899999999999999999987764   334568899999886 789999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcccccccccccCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcccccccCCCCCCCHHHHHHHcCCH
Q psy12891        467 NQVLEEMRSSKALNVYSKKLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNE  546 (567)
Q Consensus       467 ~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~  546 (567)
                      .+++++|++.+.+.+..+..|.+|+++|+..++.+++++|+++++...            +.+|..|.||||+|++.|+.
T Consensus        79 ~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~------------~~~d~~g~TpL~~A~~~~~~  146 (156)
T d1ihba_          79 LDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNV------------GHRNHKGDTACDLARLYGRN  146 (156)
T ss_dssp             HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCT------------TCCCTTSCCHHHHHHHTTCH
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccc------------cccCCCCCCHHHHHHHcCCH
Confidence            999999999999999999999999999999999999999999987543            55688999999999999999


Q ss_pred             HHHHHHHhccC
Q psy12891        547 NVVRLLLNSAG  557 (567)
Q Consensus       547 ~~v~~Ll~~~g  557 (567)
                      ++|++|+++ |
T Consensus       147 ~iv~~Ll~~-G  156 (156)
T d1ihba_         147 EVVSLMQAN-G  156 (156)
T ss_dssp             HHHHHHHHT-C
T ss_pred             HHHHHHHhc-C
Confidence            999999986 5

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=1.8e-26  Score=188.18  Aligned_cols=153  Identities=29%  Similarity=0.371  Sum_probs=95.8

Q ss_pred             CHHHHHHHcCcHHHHHHHHHcCCCCCCcCcCCCCHHHHHHHcCCHHHHHHHHHhCCCCccccCCCCCcHHHHHHHcCCHH
Q psy12891        320 TPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVG  399 (567)
Q Consensus       320 t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~  399 (567)
                      ++||.|+..|+.++|++|+++|+|++.+|..|.||||+|+ .++.+++++|++.+++ ++..+..+.++++.++..+..+
T Consensus         3 ~~Lh~Aa~~g~~~~v~~Ll~~g~d~n~~d~~g~TpL~~A~-~~~~ei~~~Ll~~~a~-~~~~~~~~~~~l~~~~~~~~~~   80 (156)
T d1ihba_           3 NELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMK-LGNPEIARRLLLRGAN-PDLKDRTGFAVIHDAARAGFLD   80 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHTTSCCCTTCCCTTSCCHHHHCC-SSCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHTCHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCcCccCCcccccccccc-cccccccccccccccc-cccccccCcccccccccccccc
Confidence            6899999999999999999999999999999999999875 6788999999988766 4455555555555555555555


Q ss_pred             HHHHHHhcCCCcccccCCCCCCCCHHHHHHHcCcHHHHHHHHHcCC-CCCCccCcCCcHHHHHHHcCcHHHHHHHHhcc
Q psy12891        400 VIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGA-SCTDENKTGFTAVHLAAQNGHNQVLEEMRSSK  477 (567)
Q Consensus       400 ~~~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~-~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~  477 (567)
                      .++.+++.+...   ...+..|.+||++|+..++.+++++|+++|+ +++.+|..|+||||+|++.++.+++++|+++|
T Consensus        81 ~~~~l~~~~~~~---~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~d~~g~TpL~~A~~~~~~~iv~~Ll~~G  156 (156)
T d1ihba_          81 TLQTLLEFQADV---NIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANG  156 (156)
T ss_dssp             HHHHHHHTTCCT---TCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTC
T ss_pred             cccccccccccc---cccccccccccccccccccccccccccccccccccccCCCCCCHHHHHHHcCCHHHHHHHHhcC
Confidence            555554443321   1222244444444444444444444444443 44444444444444444444444444444443

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=4.9e-26  Score=184.93  Aligned_cols=151  Identities=25%  Similarity=0.262  Sum_probs=109.4

Q ss_pred             HHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCccCcCCcHHHHHHHcCcH
Q psy12891        388 CAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHN  467 (567)
Q Consensus       388 ~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~  467 (567)
                      .|+.|+..|+.+++++|++.+..  ..+..+..|.||||+|+. ++.+++++|++++++++..+..|.+|++.|+..++.
T Consensus         5 ~L~~Aa~~g~~~~vk~lL~~~~~--~~n~~d~~g~t~L~~A~~-~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~~~~~~~~   81 (156)
T d1bd8a_           5 RLSGAAARGDVQEVRRLLHRELV--HPDALNRFGKTALQVMMF-GSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFL   81 (156)
T ss_dssp             HHHHHHHHTCHHHHHHHHHTTCC--CTTCCCTTSCCHHHHSCT-TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCH
T ss_pred             HHHHHHHcCCHHHHHHHHHhCCC--CCCccCCCCCcccccccc-cccccccccccccccccccccccccccccccccccc
Confidence            46777777777777777764321  233444567777777653 667777788888888777777778888888888888


Q ss_pred             HHHHHHHhcccccccccccCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcccccccCCCCCCCHHHHHHHcCCHH
Q psy12891        468 QVLEEMRSSKALNVYSKKLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNEN  547 (567)
Q Consensus       468 ~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~  547 (567)
                      +++++++++|++++.+|..|+||||+|+..|+.+++++|++ +.+.             +.+|..|.||||+|++.|+.+
T Consensus        82 ~~~~~~l~~~~~~n~~~~~~~t~L~~A~~~~~~~i~~~L~~-~~~~-------------~~~d~~G~TpL~~A~~~g~~~  147 (156)
T d1bd8a_          82 DTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAA-ESDL-------------HRRDARGLTPLELALQRGAQD  147 (156)
T ss_dssp             HHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHT-TSCT-------------TCCCTTSCCHHHHHHHSCCHH
T ss_pred             cccccccccccccccccCCCCeeeccccccccccccccccc-cccc-------------cccCCCCCCHHHHHHHcCCHH
Confidence            88888888887777777778888888888888888877764 3322             455777888888888888888


Q ss_pred             HHHHHHhc
Q psy12891        548 VVRLLLNS  555 (567)
Q Consensus       548 ~v~~Ll~~  555 (567)
                      ++++|++|
T Consensus       148 iv~~Ll~h  155 (156)
T d1bd8a_         148 LVDILQGH  155 (156)
T ss_dssp             HHHHHHTT
T ss_pred             HHHHHHhh
Confidence            88888765

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=1.1e-25  Score=182.92  Aligned_cols=150  Identities=26%  Similarity=0.306  Sum_probs=99.9

Q ss_pred             HHHHHHcCCHHHHHHHHHhCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCCCCHHHHHHHcCcH
Q psy12891        355 IHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHA  434 (567)
Q Consensus       355 L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~~~~  434 (567)
                      |+.|+..|+.++++.|++.++..++..+..|+||||+|+. ++.+++++|++.+.+.   ...+..|.+|++.++..++.
T Consensus         6 L~~Aa~~g~~~~vk~lL~~~~~~~n~~d~~g~t~L~~A~~-~~~~~v~~Ll~~~~~~---~~~~~~~~~~l~~~~~~~~~   81 (156)
T d1bd8a_           6 LSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMF-GSTAIALELLKQGASP---NVQDTSGTSPVHDAARTGFL   81 (156)
T ss_dssp             HHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHHSCT-TCHHHHHHHHHTTCCT---TCCCTTSCCHHHHHHHTTCH
T ss_pred             HHHHHHcCCHHHHHHHHHhCCCCCCccCCCCCcccccccc-cccccccccccccccc---cccccccccccccccccccc
Confidence            3444444444444444443333333444444444444332 3444444444433332   22233566788888888888


Q ss_pred             HHHHHHHHcCCCCCCccCcCCcHHHHHHHcCcHHHHHHHHhcccccccccccCCcHHHHHHHcCCHHHHHHHHhc
Q psy12891        435 NVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLGVTALHVAAYFGQADTVRELLSH  509 (567)
Q Consensus       435 ~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~  509 (567)
                      +++++++++|++++.+|..|.||||+|+..|+.+++++|+ .|++++.+|..|+||||+|+..|+.+++++|++|
T Consensus        82 ~~~~~~l~~~~~~n~~~~~~~t~L~~A~~~~~~~i~~~L~-~~~~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~h  155 (156)
T d1bd8a_          82 DTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLA-AESDLHRRDARGLTPLELALQRGAQDLVDILQGH  155 (156)
T ss_dssp             HHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHH-TTSCTTCCCTTSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred             cccccccccccccccccCCCCeeecccccccccccccccc-ccccccccCCCCCCHHHHHHHcCCHHHHHHHHhh
Confidence            8888888888888888888888888888888888888776 5778888888888888888888888888888875

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.93  E-value=5.3e-25  Score=178.68  Aligned_cols=149  Identities=34%  Similarity=0.422  Sum_probs=99.0

Q ss_pred             CHHHHHHHcCcHHHHHHHHHcCCCCCCcCcCCCCHHHHHHHcCCHHHHHHHHHhCCCCccccCCCCCcHHHHHHHcCCHH
Q psy12891        320 TPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVG  399 (567)
Q Consensus       320 t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~  399 (567)
                      |||+.|++.|+.++|++|+++|++++ .+..|.||||+|+..++.++++.++...... ...                  
T Consensus         4 t~L~~Aa~~g~~~~v~~LL~~ga~~~-~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~-~~~------------------   63 (153)
T d1awcb_           4 KKLLEAARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSR-DAR------------------   63 (153)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHTCCCC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCT-TCC------------------
T ss_pred             HHHHHHHHCCCHHHHHHHHHcCCCcc-cccCCCccccccccccccccccccccccccc-ccc------------------
Confidence            56666666666666666666666655 4555666666666666666555555443331 122                  


Q ss_pred             HHHHHHhcCCCcccccCCCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCccCcCCcHHHHHHHcCcHHHHHHHHhcccc
Q psy12891        400 VIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKAL  479 (567)
Q Consensus       400 ~~~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~  479 (567)
                                        ...+.++++.++...+.+++++++++|++++.++..|.||||+|+..|+.+++++|++.|++
T Consensus        64 ------------------~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~T~L~~A~~~g~~~iv~~ll~~gad  125 (153)
T d1awcb_          64 ------------------TKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGAD  125 (153)
T ss_dssp             ------------------CTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred             ------------------ccccccccccccccccceeeecccccCCccccccccCchHHHhhhhcchhheeeeccccccC
Confidence                              22444667777777777777777777777777777777777777777777777777777777


Q ss_pred             cccccccCCcHHHHHHHcCCHHHHHHH
Q psy12891        480 NVYSKKLGVTALHVAAYFGQADTVREL  506 (567)
Q Consensus       480 ~~~~~~~g~t~l~~A~~~~~~~~~~~L  506 (567)
                      ++.+|..|+||||+|+.+|+.+++++|
T Consensus       126 ~~~~d~~g~Tpl~~A~~~g~~eiv~lL  152 (153)
T d1awcb_         126 VHTQSKFCKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             TTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             CcccCCCCCCHHHHHHHcCCHHHHHhC
Confidence            777777777777777777777777765

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.93  E-value=6.3e-25  Score=178.21  Aligned_cols=134  Identities=25%  Similarity=0.236  Sum_probs=117.6

Q ss_pred             CcHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCccCcCCcHHHHHHHcC
Q psy12891        386 NTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNG  465 (567)
Q Consensus       386 ~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~  465 (567)
                      .|||+.|++.|+.+++++|++++++..    .+..|.||||+|+..++.++++.++.........+..+.++++.++...
T Consensus         3 ~t~L~~Aa~~g~~~~v~~LL~~ga~~~----~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (153)
T d1awcb_           3 GKKLLEAARAGQDDEVRILMANGAPFT----TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEG   78 (153)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHTCCCC----CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHT
T ss_pred             CHHHHHHHHCCCHHHHHHHHHcCCCcc----cccCCCccccccccccccccccccccccccccccccccccccccccccc
Confidence            378999999999999999998876532    3567899999999999999999999998888888889999999999999


Q ss_pred             cHHHHHHHHhcccccccccccCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCccc
Q psy12891        466 HNQVLEEMRSSKALNVYSKKLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASF  524 (567)
Q Consensus       466 ~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~  524 (567)
                      +.++++++..++++...++..|+||||+|+..|+.+++++|++++.+... .+..|.+.
T Consensus        79 ~~~~~~~l~~~~~~~~~~~~~g~T~L~~A~~~g~~~iv~~ll~~gad~~~-~d~~g~Tp  136 (153)
T d1awcb_          79 HANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHT-QSKFCKTA  136 (153)
T ss_dssp             CHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC-CCTTSCCH
T ss_pred             cceeeecccccCCccccccccCchHHHhhhhcchhheeeeccccccCCcc-cCCCCCCH
Confidence            99999999999999999999999999999999999999999999886643 33444443

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.93  E-value=5e-26  Score=206.53  Aligned_cols=204  Identities=18%  Similarity=0.222  Sum_probs=139.1

Q ss_pred             HHhcCCCCCCC-CCCCChHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCChhHHHHhcCc---hhHHHHHHHhhhhhhh
Q psy12891         56 LLKSGAGPNLT-TDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCK---AEVVDLLIQFVQNISQ  131 (567)
Q Consensus        56 Ll~~g~~~~~~-~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~~~---~~iv~~Ll~~~~~~~~  131 (567)
                      +...++|+|.. |.+|+||||+||..|+.++|++|+++|++++.+|..|+||||.|+..++   .+.++.+++....   
T Consensus        92 ~~~~~~dvn~~~D~~G~T~LH~Aa~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~~~~~~~~~~~~ll~~l~~---  168 (301)
T d1sw6a_          92 FPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYP---  168 (301)
T ss_dssp             CTTSCCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGG---
T ss_pred             CCccCCCcCcCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcCCcccccHHHHhhhcccchhhhhHHHHHHHHhh---
Confidence            33468899965 8999999999999999999999999999999999999999999998775   3334444443322   


Q ss_pred             hHHhhhhcccccccccHHHHHHHhCCcccccccccc-cHHHHHHHHHcCCCccccccCCCccHHHHHHhcCCHHHHHHHH
Q psy12891        132 EKVLEYVNSVNEDGASALHYACQVTKAELIPITSKE-DQKTVKLLLEAGADVSLQTKQNHETAFHYCAVAGNNDVLTGML  210 (567)
Q Consensus       132 ~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~-~~~~v~~Ll~~g~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll  210 (567)
                           .+...+..|+||||+++..+.........+. ...+++++.+.+............++++.+...........+.
T Consensus       169 -----~~~~~d~~g~t~lh~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (301)
T d1sw6a_         169 -----CLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLD  243 (301)
T ss_dssp             -----GGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCS
T ss_pred             -----hhhhcccccCCHHHHHHHHhCccccHHHHHHHHHHHHHHHHhcCCcchhcccccccchhHHHHhcchHHHHHHHh
Confidence                 1567788999999999876554321110011 1234566677766555444444455555554444333322211


Q ss_pred             HhccCcchhhhhhcCCCCCChHHHHHHhcCcHHHHHHHHhCCCCCCccCCCCCCHHHHHH
Q psy12891        211 EQMSGTEISKALNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAA  270 (567)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~  270 (567)
                      ..   ......++.+|..|.||||+|++.|+.++|++|+++|++++.+|..|.|||++|+
T Consensus       244 ~~---~~~~~~in~~D~~G~TpLh~A~~~g~~~iv~~Ll~~GAd~~~~n~~G~Tpl~~A~  300 (301)
T d1sw6a_         244 LK---WIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFGA  300 (301)
T ss_dssp             HH---HHHHHTTTCCCTTSCCHHHHHHHHCCHHHHHHHHHTTCCTTCCCTTSCCGGGGTC
T ss_pred             hH---HHHhcCccCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHcC
Confidence            10   0112235788999999999999999999999999999999999999999999974

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=6.2e-26  Score=175.47  Aligned_cols=120  Identities=27%  Similarity=0.252  Sum_probs=110.3

Q ss_pred             CCCHHHHHHHcCcHHHHHHHHHcCCCCCCccCcCCcHHHHHHHcCcHHHHHHHHhcccccccccccCC-cHHHHHHHcCC
Q psy12891        421 EATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLGV-TALHVAAYFGQ  499 (567)
Q Consensus       421 ~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~-t~l~~A~~~~~  499 (567)
                      +.++||+|+..|+.+++++|+++|+++|.++..|.||+|+|+ .|+.+++++|+++|++++.++..|. ||||+|+..|+
T Consensus         3 ~~~~L~~Aa~~G~~~~v~~Ll~~gad~n~~~~~g~t~l~~a~-~g~~~~v~~Ll~~ga~~~~~~~~~~~~~L~~A~~~g~   81 (125)
T d1bi7b_           3 SADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRPVHDAAREGF   81 (125)
T ss_dssp             STTHHHHHHHHTCHHHHHHHHTTTCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCCHHHHHHHHTC
T ss_pred             ChhHHHHHHHCCCHHHHHHHHHcCCccccccccccccccccc-ccccccccccccccccccccccccccccccccccccc
Confidence            458999999999999999999999999999999999999775 7999999999999999999888876 69999999999


Q ss_pred             HHHHHHHHhcCCCCCCCCCCCCcccccccCCCCCCCHHHHHHHcCCHHHHHHHHh
Q psy12891        500 ADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVRLLLN  554 (567)
Q Consensus       500 ~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~  554 (567)
                      .+++++|++++.+.             +.+|..|.||||+|+++|+.+++++|++
T Consensus        82 ~~~v~~Ll~~ga~~-------------~~~d~~G~T~l~~A~~~g~~~~v~~Lls  123 (125)
T d1bi7b_          82 LDTLVVLHRAGARL-------------DVRDAWGRLPVDLAEELGHRDVARYLRA  123 (125)
T ss_dssp             HHHHHHHHHHTCCS-------------SCCCTTCCCHHHHHHHHTCHHHHHHHSS
T ss_pred             cccccccccccccc-------------ccccCCCCCHHHHHHHcCCHHHHHHHHh
Confidence            99999999998764             6678999999999999999999999985

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.91  E-value=6.7e-26  Score=173.10  Aligned_cols=116  Identities=24%  Similarity=0.292  Sum_probs=102.3

Q ss_pred             CCHHHHHHHcCcHHHHHHHHHcCCCCCCccCcCCcHHHHHHHcCcHHHHHHHHhcccccccccccCCcHHHHHHHcCCHH
Q psy12891        422 ATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLGVTALHVAAYFGQAD  501 (567)
Q Consensus       422 ~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~  501 (567)
                      .|||++|++.|+.++|++|+++|++++.++..|+||||+|+..|+.+++++|++.|++++.+|..|+||||+|+..|+.+
T Consensus         3 ~tpL~~A~~~g~~~~v~~Ll~~g~d~n~~~~~g~t~lh~A~~~~~~~~~~~ll~~g~din~~d~~g~tpLh~A~~~~~~~   82 (118)
T d1myoa_           3 DKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVS   82 (118)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHTTTCCCCCCSSSSCCTTHHHHHHSTTTHHHHHHHSSCTTTCCSSSCSCHHHHHHTTTCCH
T ss_pred             ChHHHHHHHCCCHHHHHHHHHhhhccccccccccccccccccccccccccccccccceeeecccccccchhhhhhcCchh
Confidence            37999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCCCCCCCCCCCcccccccCCCCCCCHHHHHHHcCCHHHHHHHHh
Q psy12891        502 TVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVRLLLN  554 (567)
Q Consensus       502 ~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~  554 (567)
                      ++++|++++.+.             +.+|..|.||||+|.    .+.++.||+
T Consensus        83 ~v~~Ll~~Gad~-------------~~~d~~G~t~l~~a~----~~~i~~LL~  118 (118)
T d1myoa_          83 CVKLLLSKGADK-------------TVKGPDGLTALEATD----NQAIKALLQ  118 (118)
T ss_dssp             HHHHHHTTCCCS-------------SSSSSSTCCCCCTCS----STTTGGGGC
T ss_pred             hhhhhhcccccc-------------eeeCCCCCCHHHHHh----HHHHHHhcC
Confidence            999999987754             567889999999883    345666653

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=1.7e-24  Score=168.40  Aligned_cols=121  Identities=17%  Similarity=0.136  Sum_probs=105.4

Q ss_pred             CHHHHHHHcCcHHHHHHHHHcCCCCCCccCcCCcHHHHHHHcCcHHHHHHHHhcccccccccccCCcHHHHHHHcCCHHH
Q psy12891        423 TPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLGVTALHVAAYFGQADT  502 (567)
Q Consensus       423 t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~  502 (567)
                      ++|+.|+..|+.++|++|+++|+|+|.+|..|+||||+|+..++.+++++|++.|++++.+|..|+||||+|+.+|+.++
T Consensus         3 ~lL~~A~~~G~~~~v~~Ll~~g~d~n~~d~~g~t~Lh~A~~~~~~~~~~~ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~   82 (130)
T d1ycsb1           3 ALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQV   82 (130)
T ss_dssp             HHHHHHHHHTCHHHHHHHTSTTSSCCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHcCCCccccccccccccccccccccccccccccccccccccccccCcccccccchhhHHHH
Confidence            57899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCCCCCCCCCCCcccccccCCCCCCCHHHHH--HHcCCHHHHHHHHhc
Q psy12891        503 VRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLA--AYSGNENVVRLLLNS  555 (567)
Q Consensus       503 ~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A--~~~~~~~~v~~Ll~~  555 (567)
                      +++|++++++....            ....|.||++++  .++|+.++|++|++.
T Consensus        83 v~~Ll~~ga~v~~~------------~~~~~~~~~~~~~a~~~g~~eiv~~L~~~  125 (130)
T d1ycsb1          83 CKFLVESGAAVFAM------------TYSDMQTAADKCEEMEEGYTQCSQFLYGV  125 (130)
T ss_dssp             HHHHHHTTCCTTCC------------CSSSCCCHHHHCCSSSTTCCCHHHHHHHH
T ss_pred             HHHHHHcCCCcccc------------cCCCCCCHHHHHHHHHcChHHHHHHHHhH
Confidence            99999998765321            234577876655  677889999999863

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=2.9e-24  Score=165.97  Aligned_cols=115  Identities=31%  Similarity=0.339  Sum_probs=104.7

Q ss_pred             CCCChhhHHhhcCChhHHHHHHhhcCCCCChhh------hHhhhcCchHHHHHHHhcCCCCCCCCCCCC-hHHHHHHHhC
Q psy12891          9 LRETPLHIAARVKDGDRCALMLLKSGAGPNLTN------IAARVKDGDRCALMLLKSGAGPNLTTDDGQ-TPVHAAAKYG   81 (567)
Q Consensus         9 ~~~t~L~~A~~~g~~~~v~~~L~~~g~~~~~~~------~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~-t~L~~A~~~g   81 (567)
                      .+.++||+||+.|+.+ ++++|+++|++++...      +.++..++.+++++|+++|+++|.++..+. ||||+|+..|
T Consensus         2 p~~~~L~~Aa~~G~~~-~v~~Ll~~gad~n~~~~~g~t~l~~a~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~L~~A~~~g   80 (125)
T d1bi7b_           2 PSADWLATAAARGRVE-EVRALLEAGANPNAPNSYGRRPIQVMMMGSARVAELLLLHGAEPNCADPATLTRPVHDAAREG   80 (125)
T ss_dssp             CSTTHHHHHHHHTCHH-HHHHHHTTTCCTTCCCSSSCCTTTSSCTTCHHHHHHHHTTTCCCCCCCTTTCCCHHHHHHHHT
T ss_pred             CChhHHHHHHHCCCHH-HHHHHHHcCCccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            4679999999999998 6666889999998654      455667899999999999999999998876 6999999999


Q ss_pred             CHHHHHHHHHcCCCCCCCCCCCCChhHHHHhcCchhHHHHHHH
Q psy12891         82 NLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVVDLLIQ  124 (567)
Q Consensus        82 ~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~  124 (567)
                      +.+++++|+++|++++.+|..|+||||+|+..|+.+++++|++
T Consensus        81 ~~~~v~~Ll~~ga~~~~~d~~G~T~l~~A~~~g~~~~v~~Lls  123 (125)
T d1bi7b_          81 FLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRA  123 (125)
T ss_dssp             CHHHHHHHHHHTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSS
T ss_pred             cccccccccccccccccccCCCCCHHHHHHHcCCHHHHHHHHh
Confidence            9999999999999999999999999999999999999999975

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.90  E-value=3.7e-25  Score=168.89  Aligned_cols=107  Identities=28%  Similarity=0.303  Sum_probs=99.8

Q ss_pred             CChhhHHhhcCChhHHHHHHhhcCCCCChhhhHhhhcCchHHHHHHHhcCCCCCCCCCCCChHHHHHHHhCCHHHHHHHH
Q psy12891         11 ETPLHIAARVKDGDRCALMLLKSGAGPNLTNIAARVKDGDRCALMLLKSGAGPNLTTDDGQTPVHAAAKYGNLVTLQLLL   90 (567)
Q Consensus        11 ~t~L~~A~~~g~~~~v~~~L~~~g~~~~~~~~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll   90 (567)
                      .|||++||+.|+.+.|.                           +|+++|+|+|.++.+|+||||+|+..|+.+++++|+
T Consensus         3 ~tpL~~A~~~g~~~~v~---------------------------~Ll~~g~d~n~~~~~g~t~lh~A~~~~~~~~~~~ll   55 (118)
T d1myoa_           3 DKEFMWALKNGDLDEVK---------------------------DYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLL   55 (118)
T ss_dssp             HHHHHHHHHTTCHHHHH---------------------------HHHTTTCCCCCCSSSSCCTTHHHHHHSTTTHHHHHH
T ss_pred             ChHHHHHHHCCCHHHHH---------------------------HHHHhhhccccccccccccccccccccccccccccc
Confidence            48999999999988443                           588899999999999999999999999999999999


Q ss_pred             HcCCCCCCCCCCCCChhHHHHhcCchhHHHHHHHhhhhhhhhHHhhhhcccccccccHHHHHH
Q psy12891         91 EDGGDPMYKNKIGETPLHLASRNCKAEVVDLLIQFVQNISQEKVLEYVNSVNEDGASALHYAC  153 (567)
Q Consensus        91 ~~ga~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~t~L~~a~  153 (567)
                      ++|++++.+|..|+||||+|+..|+.+++++|+++|++         ++.+|.+|.|||++|.
T Consensus        56 ~~g~din~~d~~g~tpLh~A~~~~~~~~v~~Ll~~Gad---------~~~~d~~G~t~l~~a~  109 (118)
T d1myoa_          56 LKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGAD---------KTVKGPDGLTALEATD  109 (118)
T ss_dssp             HSSCTTTCCSSSCSCHHHHHHTTTCCHHHHHHHTTCCC---------SSSSSSSTCCCCCTCS
T ss_pred             cccceeeecccccccchhhhhhcCchhhhhhhhccccc---------ceeeCCCCCCHHHHHh
Confidence            99999999999999999999999999999999999988         7888999999999884

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.89  E-value=2.1e-24  Score=195.77  Aligned_cols=178  Identities=13%  Similarity=0.176  Sum_probs=124.8

Q ss_pred             hhhhh-hhcCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCcCCCCHHHHHHHcCC-------HHHHHHHHHhCCCCcccc
Q psy12891        310 VIDIL-TLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNF-------PEVAQIFLRAHPSLVTAT  381 (567)
Q Consensus       310 ~~~~~-~~~~~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~-------~~~~~~Ll~~~~~~~~~~  381 (567)
                      +++.. |..|+||||+|+..|+.++|++|+++|++++.+|..|+||||.|+..++       .++++++..    .....
T Consensus        98 dvn~~~D~~G~T~LH~Aa~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~~~~~~~~~~~~ll~~l~~----~~~~~  173 (301)
T d1sw6a_          98 NLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYP----CLILE  173 (301)
T ss_dssp             CSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGG----GGGEE
T ss_pred             CcCcCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcCCcccccHHHHhhhcccchhhhhHHHHHHHHhh----hhhhc
Confidence            44443 7889999999999999999999999999999999999999999998664       244444433    35677


Q ss_pred             CCCCCcHHHHHHHcCC----HHH--------HHHHHhcCCCcccccCCCCCCCCHHHHHHHcCcHHH-----HHHHHHcC
Q psy12891        382 TKDGNTCAHIAAMQGS----VGV--------IEELMKFDRSGVISARNRVTEATPLQLAAEGGHANV-----VRVLVKAG  444 (567)
Q Consensus       382 ~~~~~~~l~~a~~~~~----~~~--------~~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~-----v~~Ll~~g  444 (567)
                      +..|+||||+++..+.    ...        +.++...+....  ......+.++++.+........     +..++.. 
T Consensus       174 d~~g~t~lh~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  250 (301)
T d1sw6a_         174 DSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPI--QSGTNEKESKPNDKNGERKDSILENLDLKWIIAN-  250 (301)
T ss_dssp             CTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCE--EEC----------------CHHHHHCSHHHHHHH-
T ss_pred             ccccCCHHHHHHHHhCccccHHHHHHHHHHHHHHHHhcCCcch--hcccccccchhHHHHhcchHHHHHHHhhHHHHhc-
Confidence            8899999998876543    233        334444333221  1122233344444443333222     2233332 


Q ss_pred             CCCCCccCcCCcHHHHHHHcCcHHHHHHHHhcccccccccccCCcHHHHHH
Q psy12891        445 ASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLGVTALHVAA  495 (567)
Q Consensus       445 ~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~  495 (567)
                       .+|.+|..|+||||+|++.|+.++|++|+++|++++.+|..|+|||++|+
T Consensus       251 -~in~~D~~G~TpLh~A~~~g~~~iv~~Ll~~GAd~~~~n~~G~Tpl~~A~  300 (301)
T d1sw6a_         251 -MLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFGA  300 (301)
T ss_dssp             -TTTCCCTTSCCHHHHHHHHCCHHHHHHHHHTTCCTTCCCTTSCCGGGGTC
T ss_pred             -CccCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHcC
Confidence             37889999999999999999999999999999999999999999999986

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=2.2e-23  Score=162.02  Aligned_cols=121  Identities=28%  Similarity=0.357  Sum_probs=87.6

Q ss_pred             hHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCChhHHHHhcCchhHHHHHHHhhhhhhhhHHhhhhcccccccccHHHH
Q psy12891         72 TPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVVDLLIQFVQNISQEKVLEYVNSVNEDGASALHY  151 (567)
Q Consensus        72 t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~t~L~~  151 (567)
                      ++|+.||..|+.++|++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++         ++.+|.+|+||||+
T Consensus         3 ~lL~~A~~~G~~~~v~~Ll~~g~d~n~~d~~g~t~Lh~A~~~~~~~~~~~ll~~g~~---------~~~~d~~g~tpLh~   73 (130)
T d1ycsb1           3 ALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVN---------VNAADSDGWTPLHC   73 (130)
T ss_dssp             HHHHHHHHHTCHHHHHHHTSTTSSCCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCC---------TTCCCTTCCCHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHcCCCccccccccccccccccccccccccccccccccc---------cccccccCcccccc
Confidence            567777777777777777777777777777777777777777777777777777766         56667777777777


Q ss_pred             HHHhCCcccccccccccHHHHHHHHHcCCCccccccCCCccHHHHH--HhcCCHHHHHHHHHh
Q psy12891        152 ACQVTKAELIPITSKEDQKTVKLLLEAGADVSLQTKQNHETAFHYC--AVAGNNDVLTGMLEQ  212 (567)
Q Consensus       152 a~~~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~l~~a--~~~~~~~~~~~Ll~~  212 (567)
                      |+.+           ++.+++++|+++|++++..+...+.++++++  +..|+.+++++|+..
T Consensus        74 A~~~-----------g~~~~v~~Ll~~ga~v~~~~~~~~~~~~~~~~a~~~g~~eiv~~L~~~  125 (130)
T d1ycsb1          74 AASC-----------NNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGV  125 (130)
T ss_dssp             HHHT-----------TCHHHHHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHH
T ss_pred             cchh-----------hHHHHHHHHHHcCCCcccccCCCCCCHHHHHHHHHcChHHHHHHHHhH
Confidence            7774           3455677777777777766655556665554  456667777777764

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.88  E-value=7.3e-22  Score=157.11  Aligned_cols=125  Identities=18%  Similarity=0.150  Sum_probs=82.1

Q ss_pred             HHHHHHcCCHHHHHHHHhcCCCcc---cccCCCCCCCCHHHHHHHc---CcHHHHHHHHHcCCCCCCccCcCCcHHHHHH
Q psy12891        389 AHIAAMQGSVGVIEELMKFDRSGV---ISARNRVTEATPLQLAAEG---GHANVVRVLVKAGASCTDENKTGFTAVHLAA  462 (567)
Q Consensus       389 l~~a~~~~~~~~~~~ll~~~~~~~---~~~~~~~~~~t~L~~A~~~---~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~  462 (567)
                      |..|+..+++..+..++..+.+..   .....+..|.||||+|++.   ++.+++++|+++|+++|.+|..|+||||+|+
T Consensus        10 L~~Av~~~dl~~l~~~~~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadin~~d~~g~TpLh~A~   89 (154)
T d1dcqa1          10 LCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCC   89 (154)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCCCHHHHHH
T ss_pred             HHHHHHhCCHHHHHHHHHcCCCcCCCCCcccCCCCCCchHHHHHHhcCCCCHHHHHHHHHcCCChhhhhhhhcccccccc
Confidence            445666677766666666554322   1222234566777777753   4567777777777777777777777777777


Q ss_pred             HcCcHHHHHHHHhcccccccccccCCcHHHHHHHcCCHHHHHHHHhcCCCC
Q psy12891        463 QNGHNQVLEEMRSSKALNVYSKKLGVTALHVAAYFGQADTVRELLSHVPGT  513 (567)
Q Consensus       463 ~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~  513 (567)
                      ..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|++.+...
T Consensus        90 ~~~~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~i~~~L~~~~~~~  140 (154)
T d1dcqa1          90 LTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQALSGR  140 (154)
T ss_dssp             HTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTTC
T ss_pred             ccccccccccccccCccccccCCCCCCHHHHHHHcCCHHHHHHHHHhCCCC
Confidence            777777777777777777777777777777777777777777777654443

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.87  E-value=1.3e-21  Score=155.74  Aligned_cols=123  Identities=15%  Similarity=0.129  Sum_probs=106.5

Q ss_pred             HHHHHHHcCCHHHHHHHHHhCCCCc-----cccCCCCCcHHHHHHHc---CCHHHHHHHHhcCCCcccccCCCCCCCCHH
Q psy12891        354 PIHVAAQNNFPEVAQIFLRAHPSLV-----TATTKDGNTCAHIAAMQ---GSVGVIEELMKFDRSGVISARNRVTEATPL  425 (567)
Q Consensus       354 ~L~~A~~~~~~~~~~~Ll~~~~~~~-----~~~~~~~~~~l~~a~~~---~~~~~~~~ll~~~~~~~~~~~~~~~~~t~L  425 (567)
                      .|..|++.++...+..++..+.+..     ...+..|+||||+|+..   +..+++++|++++.+.   +..+..|.|||
T Consensus         9 ~L~~Av~~~dl~~l~~~~~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadi---n~~d~~g~TpL   85 (154)
T d1dcqa1           9 SLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNL---DKQTGKGSTAL   85 (154)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCT---TCCCTTCCCHH
T ss_pred             HHHHHHHhCCHHHHHHHHHcCCCcCCCCCcccCCCCCCchHHHHHHhcCCCCHHHHHHHHHcCCCh---hhhhhhhcccc
Confidence            4667889999999988888766532     22367799999999974   6789999999988763   44566899999


Q ss_pred             HHHHHcCcHHHHHHHHHcCCCCCCccCcCCcHHHHHHHcCcHHHHHHHHhcccc
Q psy12891        426 QLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKAL  479 (567)
Q Consensus       426 ~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~  479 (567)
                      |+|++.|+.+++++|+++|++++.+|..|+||||+|++.|+.+++++|++.++.
T Consensus        86 h~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~i~~~L~~~~~~  139 (154)
T d1dcqa1          86 HYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQALSG  139 (154)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred             ccccccccccccccccccCccccccCCCCCCHHHHHHHcCCHHHHHHHHHhCCC
Confidence            999999999999999999999999999999999999999999999999998763