Psyllid ID: psy12939

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410---
MAEPVRFRFGHKHSQISQSHLEGFCAICDKGLFLKRFDRGNCNCYGLIVPKSKREGRQDRLGLCGRPCWNFLFTVNAGLMGMVSVCAGANVFSMWSSLVIGLIAGPLYVALRYLVIACGVDDPLDASAVHFGGGLWGVMSEPLFRRGGLIYGITDDAVKVTSTNKQTSPLPGITYPIVSHWVWSDEGWLNKLGYSDFAGSGAVHLFAGTCSFIAAYLMGPRIGRFGNGRYSSPPPGHSLPGLLHNAVGAGSIFLWSLTTSFILFGFLYLINMLRVPSTEEIEGLDITKHNEIAYPPSAWNNFHAKHMLPNDHIMIDVLNHNTDARVKVTSTNKQTSPLPGITYPIVSHWVWSDEGWLNKLGYSDFAGSGAVHLFAGTCSFIAAYLMGPRIGRFGNGRYSSPPPGHSLPVSTYT
ccccEEEEEcccccccccccccccHHHHHHHHHHccccccEEEEEEccccHHcccccccEEEccccccccHHHHHHHHHHHHHHHHcccHHHcHHHHHHHHHHHHcHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHcccccHHHHHHHccccHHHHHHHccccEEEcccEEEEEcccccccccccEEccccHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHHHHHHHccccHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccccccccccHHHHHHHcEEEEEEEcHHHHHHcccccccccHHHcHHHHHHHHHHHHHHccccccccccccccccccccccccccc
ccccEEEEEccccccccccccccHHHEcccccEEEEccccccccEEEEEccccHcHHHHHHHHEEcccccHHHHHHHHHHHHHHEHcccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEcccEEEEEEccccHHHHcccEEccccHHHHHHHHHHHHHHHHHHcccccccccccccEccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccEEEEcEEEccccccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHccccccccHHHHHHHHHHHHHHHHHHHccccccccccccEEcccccccEEEEEc
maepvrfrfghkhsqisqSHLEGFCAICdkglflkrfdrgncncyglivpkskregrqdrlglcgrpcwnfLFTVNAGLMGMVSVCAGANVFSMWSSLVIGLIAGPLYVALRYLVIACgvddpldasavhfggglwgvmseplfrrggliygitdDAVKvtstnkqtsplpgitypivshwvwsdegwlnklgysdfagsgavhLFAGTCSFIAAYLmgprigrfgngrysspppghslpgllhnavGAGSIFLWSLTTSFILFGFLYLINmlrvpsteeieglditkhneiayppsawnnfhakhmlpndhIMIDVLNHNTDARVKVtstnkqtsplpgitypivshwvwsdegwlnklgysdfagsgavhLFAGTCSFIAAYLmgprigrfgngrysspppghslpvstyt
maepvrfrfghkhsqisqshLEGFCAICDKGLFLKRFDRGNCNCYglivpkskregrQDRLGLCGRPCWNFLFTVNAGLMGMVSVCAGANVFSMWSSLVIGLIAGPLYVALRYLVIACGVDDPLDASAVHFGGGLWGVMSEPLFRRGGLIYGITDDAVKVTstnkqtsplpgitYPIVSHWVWSDEGWLNKLGYSDFAGSGAVHLFAGTCSFIAAYLMGPRIGRFGNGRYSSPPPGHSLPGLLHNAVGAGSIFLWSLTTSFILFGFLYLINMLRVPSTEEIEGLDITKHNEIAYPPSAWNNFHAKHMLPNDHIMIDVLNHNTDARVKVtstnkqtsplpgitYPIVSHWVWSDEGWLNKLGYSDFAGSGAVHLFAGTCSFIAAYLMGPRIGRFGNGrysspppghslpvstyt
MAEPVRFRFGHKHSQISQSHLEGFCAICDKGLFLKRFDRGNCNCYGLIVPKSKREGRQDRLGLCGRPCWNFLFTVNAGLMGMVSVCAGANVFSMWSSLVIGLIAGPLYVALRYLVIACGVDDPLDASAVHFGGGLWGVMSEPLFRRGGLIYGITDDAVKVTSTNKQTSPLPGITYPIVSHWVWSDEGWLNKLGYSDFAGSGAVHLFAGTCSFIAAYLMGPRIGRFGNGRYsspppghslpgllhNAVGAGSIFLWSLTTSFILFGFLYLINMLRVPSTEEIEGLDITKHNEIAYPPSAWNNFHAKHMLPNDHIMIDVLNHNTDARVKVTSTNKQTSPLPGITYPIVSHWVWSDEGWLNKLGYSDFAGSGAVHLFAGTCSFIAAYLMGPRIGRFGNGRYSSPPPGHSLPVSTYT
*****************QSHLEGFCAICDKGLFLKRFDRGNCNCYGLIVPKSKREGRQDRLGLCGRPCWNFLFTVNAGLMGMVSVCAGANVFSMWSSLVIGLIAGPLYVALRYLVIACGVDDPLDASAVHFGGGLWGVMSEPLFRRGGLIYGITDDAVKVTSTNKQTSPLPGITYPIVSHWVWSDEGWLNKLGYSDFAGSGAVHLFAGTCSFIAAYLMGPRIGRFGNGR*********LPGLLHNAVGAGSIFLWSLTTSFILFGFLYLINMLRVPSTEEIEGLDITKHNEIAYPPSAWNNFHAKHMLPNDHIMIDVLNHNTDARVKVTST***TSPLPGITYPIVSHWVWSDEGWLNKLGYSDFAGSGAVHLFAGTCSFIAAYLMGPRIGRFG*******************
****VRF*************LEGFCAICDKGLFLKRFDRGNCNCYGLIVPKSKREGRQDRLGLCGRPCWNFLFTVNAGLMGMVSVCAGANVFSMWSSLVIGLIAGPLYVALRYLVIACGVDDPLDASAVHFGGGLWGVMSEPLFRRGGLIYGITDDAVKVTSTNKQTSPLPGITYPIVSHWVWSDEGWLNKLGYSDFAGSGAVHLFAGTCSFIAAYLMGPRIGRFGNGRYSSPPPGHSLPGLLHNAVGAGSIFLWSLTTSFILFGFLYLINMLRVPSTEEIEGLDITKHNEIAYPPSAWNNFHAKHMLPNDHIMIDVLNHNTDARVKVTSTNKQTSPLPGITYPIVSHWVWSDEGWLNKLGYSDFAGSGAVHLFAGTCSFIAAYLMGPRIGRFGNGRYSSPPPGHSLPVSTYT
MAEPVRFRFGHKHSQISQSHLEGFCAICDKGLFLKRFDRGNCNCYGLIVPKSKREGRQDRLGLCGRPCWNFLFTVNAGLMGMVSVCAGANVFSMWSSLVIGLIAGPLYVALRYLVIACGVDDPLDASAVHFGGGLWGVMSEPLFRRGGLIYGITDDAVKVTSTNKQTSPLPGITYPIVSHWVWSDEGWLNKLGYSDFAGSGAVHLFAGTCSFIAAYLMGPRIGRFGNGRYSSPPPGHSLPGLLHNAVGAGSIFLWSLTTSFILFGFLYLINMLRVPSTEEIEGLDITKHNEIAYPPSAWNNFHAKHMLPNDHIMIDVLNHNTDARVKVTSTNKQTSPLPGITYPIVSHWVWSDEGWLNKLGYSDFAGSGAVHLFAGTCSFIAAYLMGPRIGRFGNGRYSSPPPGHSLPVSTYT
***PVRFRF*HKHSQISQSHLEGFCAICDKGLFLKRFDRGNCNCYGLIVPKSKREGRQDRLGLCGRPCWNFLFTVNAGLMGMVSVCAGANVFSMWSSLVIGLIAGPLYVALRYLVIACGVDDPLDASAVHFGGGLWGVMSEPLFRRGGLIYGITDDAVKVTSTNKQTSPLPGITYPIVSHWVWSDEGWLNKLGYSDFAGSGAVHLFAGTCSFIAAYLMGPRIGRFGNGRYSSPPPGHSLPGLLHNAVGAGSIFLWSLTTSFILFGFLYLINMLRVPSTEEIEGLDITKHNEIAYPPSAWNNFHAKHMLPNDHIMIDVLNHNTDARVKVTSTNKQTSPLPGITYPIVSHWVWSDEGWLNKLGYSDFAGSGAVHLFAGTCSFIAAYLMGPRIGRFGNGRYSSPPPGHSLPVSTYT
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHiiHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiii
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MAEPVRFRFGHKHSQISQSHLEGFCAICDKGLFLKRFDRGNCNCYGLIVPKSKREGRQDRLGLCGRPCWNFLFTVNAGLMGMVSVCAGANVFSMWSSLVIGLIAGPLYVALRYLVIACGVDDPLDASAVHFGGGLWGVMSEPLFRRGGLIYGITDDAVKVTSTNKQTSPLPGITYPIVSHWVWSDEGWLNKLGYSDFAGSGAVHLFAGTCSFIAAYLMGPRIGRFGNGRYSSPPPGHSLPGLLHNAVGAGSIFLWSLTTSFILFGFLYLINMLRVPSTEEIEGLDITKHNEIAYPPSAWNNFHAKHMLPNDHIMIDVLNHNTDARVKVTSTNKQTSPLPGITYPIVSHWVWSDEGWLNKLGYSDFAGSGAVHLFAGTCSFIAAYLMGPRIGRFGNGRYSSPPPGHSLPVSTYT
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query413 2.2.26 [Sep-21-2011]
P54145534 Putative ammonium transpo yes N/A 0.186 0.144 0.482 6e-17
Q9BLG3 431 Ammonium transporter 2 OS yes N/A 0.234 0.225 0.396 1e-13
P54147 507 Putative ammonium transpo N/A N/A 0.198 0.161 0.433 2e-12
Q60366 391 Putative ammonium transpo yes N/A 0.230 0.242 0.377 6e-12
Q6K9G3498 Ammonium transporter 1 me yes N/A 0.457 0.379 0.28 1e-11
Q6K9G1496 Ammonium transporter 1 me no N/A 0.479 0.399 0.277 2e-11
O04161514 Ammonium transporter 1 me N/A N/A 0.479 0.385 0.279 2e-11
Q8MXY0431 Ammonium transporter 3 OS no N/A 0.186 0.178 0.423 4e-11
Q9SVT8 504 Ammonium transporter 1 me yes N/A 0.198 0.162 0.428 8e-11
Q7XQ12498 Ammonium transporter 1 me no N/A 0.462 0.383 0.278 1e-10
>sp|P54145|AMT1_CAEEL Putative ammonium transporter 1 OS=Caenorhabditis elegans GN=amt-1 PE=3 SV=1 Back     alignment and function desciption
 Score = 89.0 bits (219), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 42/87 (48%), Positives = 55/87 (63%)

Query: 69  WNFLFTVNAGLMGMVSVCAGANVFSMWSSLVIGLIAGPLYVALRYLVIACGVDDPLDASA 128
           W  L T+NA L GMV+ CAG N    W+ + +GL AG +Y+A   L+I   +DDPLDA A
Sbjct: 291 WTLLLTINACLSGMVAACAGCNKMEPWACIWVGLGAGLIYLAFSKLMIRLKIDDPLDAFA 350

Query: 129 VHFGGGLWGVMSEPLFRRGGLIYGITD 155
           VH GGG WG+MS  +   GG+ Y + D
Sbjct: 351 VHAGGGFWGLMSSSIISHGGVAYALAD 377
Involved in the uptake of ammonia.
Caenorhabditis elegans (taxid: 6239)
>sp|Q9BLG3|AMT2_DICDI Ammonium transporter 2 OS=Dictyostelium discoideum GN=amtB PE=1 SV=1 Back     alignment and function description
>sp|P54147|Y108_SYNY3 Putative ammonium transporter sll0108 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=sll0108 PE=3 SV=1 Back     alignment and function description
>sp|Q60366|Y058_METJA Putative ammonium transporter MJ0058 OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=MJ0058 PE=3 SV=1 Back     alignment and function description
>sp|Q6K9G3|AMT13_ORYSJ Ammonium transporter 1 member 3 OS=Oryza sativa subsp. japonica GN=AMT1-3 PE=2 SV=1 Back     alignment and function description
>sp|Q6K9G1|AMT12_ORYSJ Ammonium transporter 1 member 2 OS=Oryza sativa subsp. japonica GN=AMT1-2 PE=2 SV=1 Back     alignment and function description
>sp|O04161|AMT12_SOLLC Ammonium transporter 1 member 2 OS=Solanum lycopersicum GN=AMT1-2 PE=2 SV=1 Back     alignment and function description
>sp|Q8MXY0|AMT3_DICDI Ammonium transporter 3 OS=Dictyostelium discoideum GN=amtC PE=2 SV=1 Back     alignment and function description
>sp|Q9SVT8|AMT14_ARATH Ammonium transporter 1 member 4 OS=Arabidopsis thaliana GN=AMT1-4 PE=1 SV=1 Back     alignment and function description
>sp|Q7XQ12|AMT11_ORYSJ Ammonium transporter 1 member 1 OS=Oryza sativa subsp. japonica GN=AMT1-1 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query413
405962554 860 Putative ammonium transporter 1 [Crassos 0.692 0.332 0.25 2e-17
328708715458 PREDICTED: putative ammonium transporter 0.198 0.179 0.520 3e-17
328708717444 PREDICTED: putative ammonium transporter 0.198 0.184 0.520 4e-17
269785089 523 ammonium transporter-like protein [Sacco 0.232 0.183 0.432 3e-16
260805384411 hypothetical protein BRAFLDRAFT_165534 [ 0.232 0.233 0.417 2e-15
268579153 534 C. briggsae CBR-AMT-1 protein [Caenorhab 0.186 0.144 0.471 2e-15
17550180 534 Protein AMT-1 [Caenorhabditis elegans] g 0.186 0.144 0.482 4e-15
72171193496 PREDICTED: putative ammonium transporter 0.225 0.187 0.484 5e-15
308511005 534 CRE-AMT-1 protein [Caenorhabditis remane 0.266 0.205 0.414 1e-14
313235078 604 unnamed protein product [Oikopleura dioi 0.404 0.276 0.274 1e-14
>gi|405962554|gb|EKC28219.1| Putative ammonium transporter 1 [Crassostrea gigas] Back     alignment and taxonomy information
 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 87/348 (25%), Positives = 143/348 (41%), Gaps = 62/348 (17%)

Query: 69  WNFLFTVNAGLMGMVSVCAGANVFSMWSSLVIGLIAGPLYVALRYLVIACGVDDPLDASA 128
           W+    +N GL GMV++ AG++ F  +++ V+GLIA  +Y     L++   +DDPLD  A
Sbjct: 262 WSLFVAINGGLAGMVAISAGSDHFEPYAAAVVGLIAAIVYRTFSVLLVRLRIDDPLDVVA 321

Query: 129 VHFGGGLWGVMSEPLFRR-GGLIYG-ITDDAVKVT---------STNKQTSPLPGITYPI 177
           VHF GG WG+++  +F +  G++Y   T+ A  V             K+      IT+  
Sbjct: 322 VHFVGGSWGLIAVAIFHKTKGILYAWQTESAASVKFAHPANEFMEIKKENEETVDITFNA 381

Query: 178 VSHWVWSDEGWLNKLGYSDFAGSGAVHLFAGTCSFIAAYLMGPRIGRFGNGRYSSPPPGH 237
                 S E    K  Y           FAG  + I    +   +G    G        H
Sbjct: 382 ------SPEKICQKDTY-----------FAGDKAIIQIGFVVREVGAVRLGDTKRILLRH 424

Query: 238 SLPGLLHNAVGAGSIFLWSLTTSFILFGFLYLINMLRVPSTEEIEGLDITKHNEI-AYPP 296
               +L   V             + L G+ +  +     + ++  G+ +   +EI AY  
Sbjct: 425 VFNLILSGVV-------------YCLIGYAFAFS--DGGTADKFIGMKLDFSDEILAYKY 469

Query: 297 SAWNNFHAKHMLPNDHIMIDVLNHNTDARVKVTSTNKQTSPLPGITYPIVSHWVWSDEGW 356
                  A        +   +++     R K  +    T  + G+ +P+V HW   + GW
Sbjct: 470 ILLQCIFAS-------MTASIVSGAVAERCKFIAHFVYTVFITGLIHPVVRHWTLYNRGW 522

Query: 357 L-----------NKLGYSDFAGSGAVHLFAGTCSFIAAYLMGPRIGRF 393
           L            ++G+ D  GSGAVH+  G  + + A ++GPR GRF
Sbjct: 523 LYNGDEYSTLDYARIGFHDDVGSGAVHVIGGIAALMGAMMIGPRTGRF 570

Source: Crassostrea gigas

Species: Crassostrea gigas

Genus: Crassostrea

Family: Ostreidae

Order: Ostreoida

Class: Bivalvia

Phylum: Mollusca

Superkingdom: Eukaryota
>gi|328708715|ref|XP_003243780.1| PREDICTED: putative ammonium transporter 1-like isoform 2 [Acyrthosiphon pisum] Back     alignment and taxonomy information
>gi|328708717|ref|XP_001944040.2| PREDICTED: putative ammonium transporter 1-like isoform 3 [Acyrthosiphon pisum] Back     alignment and taxonomy information
>gi|269785089|ref|NP_001161500.1| ammonium transporter-like protein [Saccoglossus kowalevskii] gi|268053959|gb|ACY92466.1| ammonium transporter-like protein [Saccoglossus kowalevskii] Back     alignment and taxonomy information
>gi|260805384|ref|XP_002597567.1| hypothetical protein BRAFLDRAFT_165534 [Branchiostoma floridae] gi|229282832|gb|EEN53579.1| hypothetical protein BRAFLDRAFT_165534 [Branchiostoma floridae] Back     alignment and taxonomy information
>gi|268579153|ref|XP_002644559.1| C. briggsae CBR-AMT-1 protein [Caenorhabditis briggsae] Back     alignment and taxonomy information
>gi|17550180|ref|NP_508784.1| Protein AMT-1 [Caenorhabditis elegans] gi|1703293|sp|P54145.1|AMT1_CAEEL RecName: Full=Putative ammonium transporter 1 gi|351047584|emb|CCD63261.1| Protein AMT-1 [Caenorhabditis elegans] Back     alignment and taxonomy information
>gi|72171193|ref|XP_781954.1| PREDICTED: putative ammonium transporter 1-like [Strongylocentrotus purpuratus] Back     alignment and taxonomy information
>gi|308511005|ref|XP_003117685.1| CRE-AMT-1 protein [Caenorhabditis remanei] gi|308238331|gb|EFO82283.1| CRE-AMT-1 protein [Caenorhabditis remanei] Back     alignment and taxonomy information
>gi|313235078|emb|CBY10737.1| unnamed protein product [Oikopleura dioica] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query413
WB|WBGene00000133534 amt-1 [Caenorhabditis elegans 0.210 0.162 0.482 1.1e-22
WB|WBGene00000136577 amt-4 [Caenorhabditis elegans 0.297 0.213 0.350 5.3e-14
TAIR|locus:2117758 504 AMT1;4 "ammonium transporter 1 0.174 0.142 0.481 7.6e-10
DICTYBASE|DDB_G0277889 431 amtB "ammonium transporter" [D 0.232 0.222 0.401 2.9e-13
UNIPROTKB|Q9FVN0460 AMT1-3 "Ammonium transporter 1 0.135 0.121 0.468 4.5e-13
UNIPROTKB|P58905 488 AMT1-1 "Ammonium transporter 1 0.174 0.147 0.45 3.3e-09
TAIR|locus:2140877 501 AMT1;1 "ammonium transporter 1 0.174 0.143 0.439 4.5e-09
DICTYBASE|DDB_G0267424 431 amtC "ammonium transporter" [D 0.159 0.153 0.478 2.4e-11
TAIR|locus:2087168 496 AMT1;5 "ammonium transporter 1 0.198 0.165 0.406 1.6e-09
TAIR|locus:2087173 498 AMT1;3 "ammonium transporter 1 0.174 0.144 0.426 5.8e-08
WB|WBGene00000133 amt-1 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
 Score = 232 (86.7 bits), Expect = 1.1e-22, Sum P(2) = 1.1e-22
 Identities = 42/87 (48%), Positives = 55/87 (63%)

Query:    69 WNFLFTVNAGLMGMVSVCAGANVFSMWSSLVIGLIAGPLYVALRYLVIACGVDDPLDASA 128
             W  L T+NA L GMV+ CAG N    W+ + +GL AG +Y+A   L+I   +DDPLDA A
Sbjct:   291 WTLLLTINACLSGMVAACAGCNKMEPWACIWVGLGAGLIYLAFSKLMIRLKIDDPLDAFA 350

Query:   129 VHFGGGLWGVMSEPLFRRGGLIYGITD 155
             VH GGG WG+MS  +   GG+ Y + D
Sbjct:   351 VHAGGGFWGLMSSSIISHGGVAYALAD 377
GO:0008519 "ammonium transmembrane transporter activity" evidence=IEA
GO:0016020 "membrane" evidence=IEA
GO:0072488 "ammonium transmembrane transport" evidence=IEA
GO:0015696 "ammonium transport" evidence=IEA
GO:0016021 "integral to membrane" evidence=IEA
WB|WBGene00000136 amt-4 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
TAIR|locus:2117758 AMT1;4 "ammonium transporter 1;4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0277889 amtB "ammonium transporter" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
UNIPROTKB|Q9FVN0 AMT1-3 "Ammonium transporter 1 member 3" [Solanum lycopersicum (taxid:4081)] Back     alignment and assigned GO terms
UNIPROTKB|P58905 AMT1-1 "Ammonium transporter 1 member 1" [Solanum lycopersicum (taxid:4081)] Back     alignment and assigned GO terms
TAIR|locus:2140877 AMT1;1 "ammonium transporter 1;1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0267424 amtC "ammonium transporter" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
TAIR|locus:2087168 AMT1;5 "ammonium transporter 1;5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2087173 AMT1;3 "ammonium transporter 1;3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query413
TIGR00836403 TIGR00836, amt, ammonium transporter 3e-19
TIGR00836 403 TIGR00836, amt, ammonium transporter 4e-19
pfam00909399 pfam00909, Ammonium_transp, Ammonium Transporter F 1e-17
pfam00909 399 pfam00909, Ammonium_transp, Ammonium Transporter F 3e-17
TIGR00836403 TIGR00836, amt, ammonium transporter 4e-16
COG0004409 COG0004, AmtB, Ammonia permease [Inorganic ion tra 9e-16
COG0004409 COG0004, AmtB, Ammonia permease [Inorganic ion tra 1e-15
COG0004 409 COG0004, AmtB, Ammonia permease [Inorganic ion tra 5e-15
pfam00909399 pfam00909, Ammonium_transp, Ammonium Transporter F 2e-14
TIGR03644 404 TIGR03644, marine_trans_1, probable ammonium trans 2e-13
TIGR03644404 TIGR03644, marine_trans_1, probable ammonium trans 7e-13
TIGR00836403 TIGR00836, amt, ammonium transporter 5e-08
pfam00909399 pfam00909, Ammonium_transp, Ammonium Transporter F 5e-07
TIGR03644404 TIGR03644, marine_trans_1, probable ammonium trans 5e-05
TIGR03644404 TIGR03644, marine_trans_1, probable ammonium trans 2e-04
PRK10666 428 PRK10666, PRK10666, ammonium transporter; Provisio 2e-04
PRK10666428 PRK10666, PRK10666, ammonium transporter; Provisio 2e-04
PRK10666428 PRK10666, PRK10666, ammonium transporter; Provisio 0.002
>gnl|CDD|233145 TIGR00836, amt, ammonium transporter Back     alignment and domain information 
 Score = 88.5 bits (220), Expect = 3e-19
 Identities = 40/95 (42%), Positives = 48/95 (50%), Gaps = 13/95 (13%)

Query: 172 GITYPIVSHWVWSDEGWLNKLGYSDFAGSGAVHLFAGTCSFIAAYLMGPRIGRFGNGRYS 231
            + YP V+HWVW   GWL KLG  DFAG G VH+  G     AA ++GPRIGRF      
Sbjct: 132 TLVYPPVAHWVWGGGGWLYKLGVLDFAGGGVVHIVGGVAGLAAALVLGPRIGRFPR---P 188

Query: 232 SPPPGHSLPGLLHNAVGAGSIFLWSLTTSFILFGF 266
                H++P      V  G+  LW     F  FGF
Sbjct: 189 VAIRPHNVP----LVV-LGTFILW-----FGWFGF 213

The Ammonium Transporter (Amt) Family (TC 2.A.49) All functionally characterized members of the Amt family are ammonia or ammonium uptake transporters. Some, but not others, also transport methylammonium. The mechanism of energy coupling, if any, to methyl-NH2 or NH3 uptake by the AmtB protein of E. coli is not entirely clear. NH4+ uniport driven by the pmf, energy independent NH3 facilitation, and NH4+/K+ antiport have been proposed as possible transport mechanisms. In Corynebacterium glutamicum and Arabidopsis thaliana, uptake via the Amt1 homologues of AmtB has been reported to be driven by the pmf [Transport and binding proteins, Cations and iron carrying compounds]. Length = 403
>gnl|CDD|233145 TIGR00836, amt, ammonium transporter Back     alignment and domain information
>gnl|CDD|216185 pfam00909, Ammonium_transp, Ammonium Transporter Family Back     alignment and domain information
>gnl|CDD|216185 pfam00909, Ammonium_transp, Ammonium Transporter Family Back     alignment and domain information
>gnl|CDD|233145 TIGR00836, amt, ammonium transporter Back     alignment and domain information
>gnl|CDD|223083 COG0004, AmtB, Ammonia permease [Inorganic ion transport and metabolism] Back     alignment and domain information
>gnl|CDD|223083 COG0004, AmtB, Ammonia permease [Inorganic ion transport and metabolism] Back     alignment and domain information
>gnl|CDD|223083 COG0004, AmtB, Ammonia permease [Inorganic ion transport and metabolism] Back     alignment and domain information
>gnl|CDD|216185 pfam00909, Ammonium_transp, Ammonium Transporter Family Back     alignment and domain information
>gnl|CDD|234292 TIGR03644, marine_trans_1, probable ammonium transporter, marine subtype Back     alignment and domain information
>gnl|CDD|234292 TIGR03644, marine_trans_1, probable ammonium transporter, marine subtype Back     alignment and domain information
>gnl|CDD|233145 TIGR00836, amt, ammonium transporter Back     alignment and domain information
>gnl|CDD|216185 pfam00909, Ammonium_transp, Ammonium Transporter Family Back     alignment and domain information
>gnl|CDD|234292 TIGR03644, marine_trans_1, probable ammonium transporter, marine subtype Back     alignment and domain information
>gnl|CDD|234292 TIGR03644, marine_trans_1, probable ammonium transporter, marine subtype Back     alignment and domain information
>gnl|CDD|182630 PRK10666, PRK10666, ammonium transporter; Provisional Back     alignment and domain information
>gnl|CDD|182630 PRK10666, PRK10666, ammonium transporter; Provisional Back     alignment and domain information
>gnl|CDD|182630 PRK10666, PRK10666, ammonium transporter; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 413
COG0004409 AmtB Ammonia permease [Inorganic ion transport and 100.0
KOG0682|consensus 500 100.0
TIGR03644404 marine_trans_1 probable ammonium transporter, mari 100.0
PRK10666428 ammonium transporter; Provisional 100.0
TIGR00836403 amt ammonium transporter. The mechanism of energy 100.0
PF00909399 Ammonium_transp: Ammonium Transporter Family; Inte 100.0
COG0004409 AmtB Ammonia permease [Inorganic ion transport and 99.97
KOG0682|consensus500 99.94
TIGR00836403 amt ammonium transporter. The mechanism of energy 99.93
TIGR03644404 marine_trans_1 probable ammonium transporter, mari 99.92
PRK10666428 ammonium transporter; Provisional 99.92
PF00909399 Ammonium_transp: Ammonium Transporter Family; Inte 99.9
KOG3796|consensus442 98.58
KOG3796|consensus442 96.08
>COG0004 AmtB Ammonia permease [Inorganic ion transport and metabolism] Back     alignment and domain information 
Probab=100.00  E-value=1.3e-57  Score=459.40  Aligned_cols=304  Identities=24%  Similarity=0.305  Sum_probs=248.7

Q ss_pred             cCCCCcchhhhhhhhhh---------hcceecccCCcccch-HHHHHHHhchhhhHHHHHHHHHHcCCCCC-----CCch
Q psy12939         63 LCGRPCWNFLFTVNAGL---------MGMVSVCAGANVFSM-WSSLVIGLIAGPLYVALRYLVIACGVDDP-----LDAS  127 (413)
Q Consensus        63 ~~g~~~W~l~~~~~g~l---------aGLV~it~~~~~v~~-~~a~vig~i~g~~~~~~~~~~~~~~idd~-----l~~~  127 (413)
                      +.+|++|+++++.++++         +||+|   +||++|+ |++++..+++.++|++++|++. |+-|..     ++.+
T Consensus         2 ~~~d~~wml~sa~LV~lMtpGlalfy~Gl~R---~Kn~ln~~m~~~~~~~i~~~~w~~~Gysla-fg~~~~~~iG~~~~~   77 (409)
T COG0004           2 DSGDTAWMLLSAALVLLMTPGLALFYGGLVR---KKNVLNTLMQSFVAFAIVTLLWIFVGYSLA-FGPDGNGFIGNLDQF   77 (409)
T ss_pred             CcccHHHHHHHHHHHHHHhhHHHHHHhhHhh---hHHHHHHHHHHHHHHHHHHHHHHHHhhhhe-ecCCCCcccCCHHHH
Confidence            56899999999999987         77787   9999998 5788889999999999999998 553211     1222


Q ss_pred             hhhcccch--h--hhcchhhhhcccceeeee---------ecccccccccccccCcceEEeccccceeeCCCccccccCc
Q psy12939        128 AVHFGGGL--W--GVMSEPLFRRGGLIYGIT---------DDAVKVTSTNKQTSPLPGITYPIVSHWVWSDEGWLNKLGY  194 (413)
Q Consensus       128 ~vHgvgG~--~--G~i~~glFA~~~~~~~ai---------aeR~~~~~~~if~~~~~glvYp~~ahWvW~~~GWL~~lG~  194 (413)
                      ..+++...  .  ..+|+.+|..||++|++|         +||+||++|++|+.+|.+++|||.+||+|+++|||.++|+
T Consensus        78 ~~~~~~~~~~~~~~~ip~~~f~~FQ~~FAait~alisGa~AER~kf~a~lvf~~lw~~~vY~p~ahWvWggggwl~~~g~  157 (409)
T COG0004          78 FLNGLGFAAVAGGAGIPELVFFAFQMMFAAITPALISGAVAERMKFSAYLLFSVLWSTLVYPPVAHWVWGGGGWLALLGA  157 (409)
T ss_pred             hccCccccccCCcccchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhheeEecCchHHHhcCc
Confidence            22332211  2  368999999999988765         5999999999999999999999999999999999999999


Q ss_pred             eeecCCceEEechhHHHHHHHHHhcCCCCcCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccc
Q psy12939        195 SDFAGSGAVHLFAGTCSFIAAYLMGPRIGRFGNGRYSSPPPGHSLPGLLHNAVGAGSIFLWSLTTSFILFGFLYLINMLR  274 (413)
Q Consensus       195 ~DFAGg~vVH~~gG~~aLa~a~~LGpR~grf~~~~~~~~~~~~~~~~~~~qlv~lg~~~lW~g~~~f~~~~~~~~~~~lr  274 (413)
                      +|||||+|||+++|++||+++++||||+++     .+++.||||.++     +.+|+.+||++|++||..+.+..     
T Consensus       158 ~DFAGgtVVHi~aG~aaLa~a~~lG~R~g~-----~~~~~~pHNl~~-----~~lGa~lLWfGWfGFN~GSal~~-----  222 (409)
T COG0004         158 LDFAGGTVVHINAGFAALAAALVLGKRIGG-----KPVAIPPHNLPL-----VVLGAALLWFGWFGFNAGSALAA-----  222 (409)
T ss_pred             eecCCCceEEechhHHHHHHHHHeecccCC-----CCCCCCCCchhH-----HHHHHHHHHHHHccCCccchhhh-----
Confidence            999999999999999999999999999882     335678999997     58999999999999988876543     


Q ss_pred             cccccccccccccccccccCCcchhhhhhhhccCCCcchhhhhhhccccceeEEeeecccCCCccceeccceeeEeecc-
Q psy12939        275 VPSTEEIEGLDITKHNEIAYPPSAWNNFHAKHMLPNDHIMIDVLNHNTDARVKVTSTNKQTSPLPGITYPIVSHWVWSD-  353 (413)
Q Consensus       275 v~~~~e~~GLd~~~hg~~ay~~~a~~~f~~~~~~~~~~~~~~i~~G~iagrv~ita~~~~~~~~~a~i~~~va~~vw~~-  353 (413)
                       +.+...  .-++++-..+....+|+..  ++..++|+++..++||++||||+|||.|+|++||++++++++++.+|.. 
T Consensus       223 -~~~a~~--a~~nT~lAaa~g~l~w~~~--e~~~~~Kp~~lg~~sG~vAGLVaITpaag~V~p~~A~iiGii~g~i~~~a  297 (409)
T COG0004         223 -NGVAAL--AFVNTNLAAAAGALGWMLI--EWLRNGKPSLLGAASGAVAGLVAITPAAGFVSPWGALIIGLIAGVICYFA  297 (409)
T ss_pred             -hhhHHH--HHHHHHHHHHHHHHHHHHH--HHHHcCCCchhhhhhHHHhHHHhcCCcccccCcHHHHHHHHHHHHHHHHH
Confidence             111111  1122222333334455544  5555889999999999999999999999999999999999999987753 


Q ss_pred             hhhh-hccCceeccCCeeecchhHHHHHHHHHhhccCC
Q psy12939        354 EGWL-NKLGYSDFAGSGAVHLFAGTCSFIAAYLMGPRI  390 (413)
Q Consensus       354 ~g~l-~~l~idD~~g~~~VH~~gG~~Gli~~~l~g~r~  390 (413)
                      ..++ +|+|+||++|+++||+++|++|.+++++|+...
T Consensus       298 ~~~lk~~l~~DD~ld~f~vHGvgGi~G~i~~GiFa~~~  335 (409)
T COG0004         298 VKLLKKKLGVDDALDVFGVHGVGGIVGAILTGIFAAPA  335 (409)
T ss_pred             HHHHHHhcCCCCcccceeccchhhHHHHHHHHHhcCcc
Confidence            3344 559999999999999999999999999999875

>KOG0682|consensus Back     alignment and domain information
>TIGR03644 marine_trans_1 probable ammonium transporter, marine subtype Back     alignment and domain information
>PRK10666 ammonium transporter; Provisional Back     alignment and domain information
>TIGR00836 amt ammonium transporter Back     alignment and domain information
>PF00909 Ammonium_transp: Ammonium Transporter Family; InterPro: IPR024041 This ammonium transporter domain consists of a duplication of 2 structural repeats of five helices each plus one extra C-terminal helix Back     alignment and domain information
>COG0004 AmtB Ammonia permease [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG0682|consensus Back     alignment and domain information
>TIGR00836 amt ammonium transporter Back     alignment and domain information
>TIGR03644 marine_trans_1 probable ammonium transporter, marine subtype Back     alignment and domain information
>PRK10666 ammonium transporter; Provisional Back     alignment and domain information
>PF00909 Ammonium_transp: Ammonium Transporter Family; InterPro: IPR024041 This ammonium transporter domain consists of a duplication of 2 structural repeats of five helices each plus one extra C-terminal helix Back     alignment and domain information
>KOG3796|consensus Back     alignment and domain information
>KOG3796|consensus Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query413
2b2f_A 399 Ammonium Transporter Amt-1 From A.Fulgidus (Native) 2e-06
>pdb|2B2F|A Chain A, Ammonium Transporter Amt-1 From A.Fulgidus (Native) Length = 399 Back     alignment and structure 
Iteration: 1

 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/98 (33%), Positives = 47/98 (47%), Gaps = 6/98 (6%)
Query: 313 IMIDVLNHNTDARVKVTSTNKQTSPLPGITYPIVSHWVWSDEGWLNKLGYSDFAGSGAVH 372
           + I +L      R KV+S    ++      Y   +HW+W   GWL KLG  DFAG   VH
Sbjct: 99  VTIAILTSAIAERAKVSSFILLSALWLTFVYAPFAHWLWGG-GWLAKLGALDFAGGMVVH 157
Query: 373 LFAGTCSFIAAYLMGPRIGRFGNGRYSSPPPGHSLPVS 410
           + +G  +   A  +G R G      YS  P  HS+P++
Sbjct: 158 ISSGFAALAVAMTIGKRAGF---EEYSIEP--HSIPLT 190

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query413
3b9w_A407 Ammonium transporter family; membrane protein, amm 2e-15
3b9w_A 407 Ammonium transporter family; membrane protein, amm 1e-14
3b9w_A407 Ammonium transporter family; membrane protein, amm 5e-11
3b9w_A407 Ammonium transporter family; membrane protein, amm 5e-09
3hd6_A490 Ammonium transporter RH type C; ammonia, channel, 1e-11
3hd6_A 490 Ammonium transporter RH type C; ammonia, channel, 1e-10
3hd6_A490 Ammonium transporter RH type C; ammonia, channel, 4e-08
2b2h_A399 AMT-1, ammonium transporter; membrane protein, tra 2e-11
2b2h_A 399 AMT-1, ammonium transporter; membrane protein, tra 4e-10
2b2h_A399 AMT-1, ammonium transporter; membrane protein, tra 7e-08
2b2h_A399 AMT-1, ammonium transporter; membrane protein, tra 1e-06
1u7g_A385 Probable ammonium transporter; right handed helica 8e-11
1u7g_A 385 Probable ammonium transporter; right handed helica 5e-10
1u7g_A385 Probable ammonium transporter; right handed helica 2e-07
>3b9w_A Ammonium transporter family; membrane protein, ammonia transport, rhesus protein, transpo protein; HET: BOG; 1.30A {Nitrosomonas europaea} PDB: 3bhs_A 3b9y_A* 3b9z_A* Length = 407 Back     alignment and structure
 Score = 76.3 bits (188), Expect = 2e-15
 Identities = 17/92 (18%), Positives = 25/92 (27%), Gaps = 15/92 (16%)

Query: 175 YPIVSHWVWSDEGWLNKLGYSDFAGSGAVHLFAGTCSFIAAYLMGPRIGRFGNGRYSSPP 234
           Y +    V  +       G+ D AGS A+H F        +  +     R          
Sbjct: 118 YLLNEWLVLDN-ASGLTEGFQDSAGSIAIHAFGAYFGLGVSIALTTAAQRAQP----IES 172

Query: 235 PGHSLPGLLHNAVGAGSIFLWSLTTSFILFGF 266
              S    +      GS+ LW          F
Sbjct: 173 DATSDRFSM-----LGSMVLW-----LFWPSF 194
>3b9w_A Ammonium transporter family; membrane protein, ammonia transport, rhesus protein, transpo protein; HET: BOG; 1.30A {Nitrosomonas europaea} PDB: 3bhs_A 3b9y_A* 3b9z_A* Length = 407 Back     alignment and structure
>3b9w_A Ammonium transporter family; membrane protein, ammonia transport, rhesus protein, transpo protein; HET: BOG; 1.30A {Nitrosomonas europaea} PDB: 3bhs_A 3b9y_A* 3b9z_A* Length = 407 Back     alignment and structure
>3b9w_A Ammonium transporter family; membrane protein, ammonia transport, rhesus protein, transpo protein; HET: BOG; 1.30A {Nitrosomonas europaea} PDB: 3bhs_A 3b9y_A* 3b9z_A* Length = 407 Back     alignment and structure
>3hd6_A Ammonium transporter RH type C; ammonia, channel, rhesus, glycoprotein, membran structural genomics, PSI-2, protein structure initiative; HET: BOG; 2.10A {Homo sapiens} Length = 490 Back     alignment and structure
>3hd6_A Ammonium transporter RH type C; ammonia, channel, rhesus, glycoprotein, membran structural genomics, PSI-2, protein structure initiative; HET: BOG; 2.10A {Homo sapiens} Length = 490 Back     alignment and structure
>3hd6_A Ammonium transporter RH type C; ammonia, channel, rhesus, glycoprotein, membran structural genomics, PSI-2, protein structure initiative; HET: BOG; 2.10A {Homo sapiens} Length = 490 Back     alignment and structure
>2b2h_A AMT-1, ammonium transporter; membrane protein, transport protein; 1.54A {Archaeoglobus fulgidus} PDB: 2b2f_A 2b2i_A 2b2j_A Length = 399 Back     alignment and structure
>2b2h_A AMT-1, ammonium transporter; membrane protein, transport protein; 1.54A {Archaeoglobus fulgidus} PDB: 2b2f_A 2b2i_A 2b2j_A Length = 399 Back     alignment and structure
>2b2h_A AMT-1, ammonium transporter; membrane protein, transport protein; 1.54A {Archaeoglobus fulgidus} PDB: 2b2f_A 2b2i_A 2b2j_A Length = 399 Back     alignment and structure
>2b2h_A AMT-1, ammonium transporter; membrane protein, transport protein; 1.54A {Archaeoglobus fulgidus} PDB: 2b2f_A 2b2i_A 2b2j_A Length = 399 Back     alignment and structure
>1u7g_A Probable ammonium transporter; right handed helical bundle, transmembrane helices, ammonia membrane protein, RH protein, transport protein; HET: MSE BOG; 1.40A {Escherichia coli} SCOP: f.44.1.1 PDB: 1u77_A* 1u7c_A* 1xqf_A 1xqe_A 2ns1_A* 2nop_A 2nmr_A 3c1g_A 3c1i_A* 3c1h_A* 2now_A 2npe_A 2npc_A 2npd_A 2npg_A 2npj_A 2nuu_A* 3c1j_A 2npk_A Length = 385 Back     alignment and structure
>1u7g_A Probable ammonium transporter; right handed helical bundle, transmembrane helices, ammonia membrane protein, RH protein, transport protein; HET: MSE BOG; 1.40A {Escherichia coli} SCOP: f.44.1.1 PDB: 1u77_A* 1u7c_A* 1xqf_A 1xqe_A 2ns1_A* 2nop_A 2nmr_A 3c1g_A 3c1i_A* 3c1h_A* 2now_A 2npe_A 2npc_A 2npd_A 2npg_A 2npj_A 2nuu_A* 3c1j_A 2npk_A Length = 385 Back     alignment and structure
>1u7g_A Probable ammonium transporter; right handed helical bundle, transmembrane helices, ammonia membrane protein, RH protein, transport protein; HET: MSE BOG; 1.40A {Escherichia coli} SCOP: f.44.1.1 PDB: 1u77_A* 1u7c_A* 1xqf_A 1xqe_A 2ns1_A* 2nop_A 2nmr_A 3c1g_A 3c1i_A* 3c1h_A* 2now_A 2npe_A 2npc_A 2npd_A 2npg_A 2npj_A 2nuu_A* 3c1j_A 2npk_A Length = 385 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query413
1u7g_A385 Probable ammonium transporter; right handed helica 100.0
2b2h_A399 AMT-1, ammonium transporter; membrane protein, tra 100.0
3b9w_A407 Ammonium transporter family; membrane protein, amm 100.0
3hd6_A490 Ammonium transporter RH type C; ammonia, channel, 99.98
2b2h_A399 AMT-1, ammonium transporter; membrane protein, tra 99.94
3b9w_A407 Ammonium transporter family; membrane protein, amm 99.87
3hd6_A490 Ammonium transporter RH type C; ammonia, channel, 99.85
1u7g_A385 Probable ammonium transporter; right handed helica 99.82
>1u7g_A Probable ammonium transporter; right handed helical bundle, transmembrane helices, ammonia membrane protein, RH protein, transport protein; HET: MSE BOG; 1.40A {Escherichia coli} SCOP: f.44.1.1 PDB: 1u77_A* 1u7c_A* 1xqf_A 1xqe_A 2ns1_A* 2nop_A 2nmr_A 3c1g_A 3c1i_A* 3c1h_A* 2now_A 2npe_A 2npc_A 2npd_A 2npg_A 2npj_A 2nuu_A* 3c1j_A 2npk_A Back     alignment and structure
Probab=100.00  E-value=2.7e-53  Score=430.23  Aligned_cols=303  Identities=18%  Similarity=0.155  Sum_probs=240.2

Q ss_pred             cCCCCcchhhhhhhhhh----------hcceecccCCcccchH-HHHHHHhchhhhHHHHHHHHHHcCCCCC----CCch
Q psy12939         63 LCGRPCWNFLFTVNAGL----------MGMVSVCAGANVFSMW-SSLVIGLIAGPLYVALRYLVIACGVDDP----LDAS  127 (413)
Q Consensus        63 ~~g~~~W~l~~~~~g~l----------aGLV~it~~~~~v~~~-~a~vig~i~g~~~~~~~~~~~~~~idd~----l~~~  127 (413)
                      +.+|+.|++++++++++          +|+||   +||.+|.+ ++++..++++++|++++|++. |+-|+.    .+.+
T Consensus         6 ~~~d~~w~l~~~~LV~~M~~~Gfa~~~~G~vR---~KN~~n~l~k~~~~~~i~~i~w~~~Gy~la-fg~~~~~iG~~~~~   81 (385)
T 1u7g_A            6 DKADNAFMMICTALVLFMTIPGIALFYGGLIR---GKNVLSMLTQVTVTFALVCILWVVYGYSLA-SGEGNNFFGNINWL   81 (385)
T ss_dssp             CHHHHHHHHHHHHHHHHHHTTHHHHHHHTTSC---HHHHHHHHHHHHHHHHHHHHHHHHTHHHHH-HSSCSSSCCCSTTG
T ss_pred             ccccHHHHHHHHHHHHHHHHHHHHHHhccccc---HhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCCCccccCcchh
Confidence            56799999999999885          57777   99999985 677779999999999999998 664422    2333


Q ss_pred             hhhcccc--hhhhcchhhhhcccceee---------eeecccccccccccccCcceEEeccccceeeCCCccccccCcee
Q psy12939        128 AVHFGGG--LWGVMSEPLFRRGGLIYG---------ITDDAVKVTSTNKQTSPLPGITYPIVSHWVWSDEGWLNKLGYSD  196 (413)
Q Consensus       128 ~vHgvgG--~~G~i~~glFA~~~~~~~---------aiaeR~~~~~~~if~~~~~glvYp~~ahWvW~~~GWL~~lG~~D  196 (413)
                      ..+++..  .-+.+|..+|..+|++|+         +++||+|+.+|++|+++|++++|||.+||+|+ +|||+++|++|
T Consensus        82 ~l~~~~~~~~~~~ip~~~~~~FQ~~Faa~t~~IvsGAvaeR~kf~a~lif~~l~~~~vY~~~ahwvW~-~GwL~~lG~~D  160 (385)
T 1u7g_A           82 MLKNIELTAVMGSIYQYIHVAFQGSFACITVGLIVGALAERIRFPAVLIFVVVWLTLSYIPIAHMVWG-GGLLASHGALD  160 (385)
T ss_dssp             GGTTCCTTCEETTEEHHHHHHHHHHHHHHHHHHHHHHHGGGBCHHHHHHHHHHHHHHTHHHHHHHHHS-SCHHHHHTCCC
T ss_pred             hccCCCCcccccCcchHHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHhhhhhheeEc-chhhhhcceee
Confidence            3333321  124678888888887665         55799999999999999999999999999999 89999999999


Q ss_pred             ecCCceEEechhHHHHHHHHHhcCCCCcCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccc
Q psy12939        197 FAGSGAVHLFAGTCSFIAAYLMGPRIGRFGNGRYSSPPPGHSLPGLLHNAVGAGSIFLWSLTTSFILFGFLYLINMLRVP  276 (413)
Q Consensus       197 FAGg~vVH~~gG~~aLa~a~~LGpR~grf~~~~~~~~~~~~~~~~~~~qlv~lg~~~lW~g~~~f~~~~~~~~~~~lrv~  276 (413)
                      ||||+|||++||++||+++++||||++| ++    +++|+||.+.     +.+|+.+||++|++||..+.+.      .+
T Consensus       161 FAGs~vVH~~gG~aaL~~a~~LG~R~g~-~~----~~~~~hn~~~-----~~lGt~lLW~GWfGFN~GS~l~------~~  224 (385)
T 1u7g_A          161 FAGGTVVHINAAIAGLVGAYLIGKRVGF-GK----EAFKPHNLPM-----VFTGTAILYIGWFGFNAGSAGT------AN  224 (385)
T ss_dssp             SSCTTTTHHHHHHHHHHHHHHSCCCCCT-TC----SSCCGGGHHH-----HHHHHHHHHHHHHHHHHGGGSS------SS
T ss_pred             ccCCeEEEecchHHHHHHHHHhcCCCCC-CC----CCCCCCCHHH-----HHHHHHHHHHHHhhhcchhhhh------cc
Confidence            9999999999999999999999999985 22    4567899886     6899999999999988765432      11


Q ss_pred             cccccccccccccccccCCcchhhhhhhhccCCCcchhhhhhhccccceeEEeeecccCCCccceeccceeeEeecc-hh
Q psy12939        277 STEEIEGLDITKHNEIAYPPSAWNNFHAKHMLPNDHIMIDVLNHNTDARVKVTSTNKQTSPLPGITYPIVSHWVWSD-EG  355 (413)
Q Consensus       277 ~~~e~~GLd~~~hg~~ay~~~a~~~f~~~~~~~~~~~~~~i~~G~iagrv~ita~~~~~~~~~a~i~~~va~~vw~~-~g  355 (413)
                      ++...  .-++++-..+....+|..  .++..++|+++..++||++||+|+|||.|.+++||+++++|++++.++.. ..
T Consensus       225 ~~a~~--a~~nT~lAaaag~l~~~~--~~~~~~gk~~~~~~~nG~lAGLVaITa~~~~v~p~~A~iiG~iag~i~~~~~~  300 (385)
T 1u7g_A          225 EIAAL--AFVNTVVATAAAILGWIF--GEWALRGLPSLLGACSGAIAGLVGVTPACGYIGVGGALIIGVVAGLAGLWGVT  300 (385)
T ss_dssp             HHHHH--HHHHHHHHHHHHHHHHHH--HHHHHHSSCCHHHHHHHHHHHHHHHTTTTTTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             chhHh--HHHHHHHHHHHHHHHHHH--HHHHHcCCCCHHHHHHHHHHhhhhhccCCCCCCHHHHHHHHhHHHHHHHHHHH
Confidence            11111  112222222222233333  35556789999999999999999999999999999999999999987642 23


Q ss_pred             -hhhccCceeccCCeeecchhHHHHHHHHHhhccCC
Q psy12939        356 -WLNKLGYSDFAGSGAVHLFAGTCSFIAAYLMGPRI  390 (413)
Q Consensus       356 -~l~~l~idD~~g~~~VH~~gG~~Gli~~~l~g~r~  390 (413)
                       +.+|+|+||++|+++||+++|+||.+++++|+.+.
T Consensus       301 ~l~~~l~iDD~l~a~~vHgv~Gi~G~l~~glfa~~~  336 (385)
T 1u7g_A          301 MLKRLLRVDDPCDVFGVHGVCGIVGCIMTGIFAASS  336 (385)
T ss_dssp             HHHHHHCSCCGGGHHHHHHHHHHHHHHHHHHHTSGG
T ss_pred             HHHHhCCCCCCCCCEeecccccHHHHHHHHHhcccc
Confidence             34689999999999999999999999999998653
>2b2h_A AMT-1, ammonium transporter; membrane protein, transport protein; 1.54A {Archaeoglobus fulgidus} PDB: 2b2f_A 2b2i_A 2b2j_A Back     alignment and structure
>3b9w_A Ammonium transporter family; membrane protein, ammonia transport, rhesus protein, transpo protein; HET: BOG; 1.30A {Nitrosomonas europaea} PDB: 3bhs_A 3b9y_A* 3b9z_A* Back     alignment and structure
>3hd6_A Ammonium transporter RH type C; ammonia, channel, rhesus, glycoprotein, membran structural genomics, PSI-2, protein structure initiative; HET: BOG; 2.10A {Homo sapiens} Back     alignment and structure
>2b2h_A AMT-1, ammonium transporter; membrane protein, transport protein; 1.54A {Archaeoglobus fulgidus} PDB: 2b2f_A 2b2i_A 2b2j_A Back     alignment and structure
>3b9w_A Ammonium transporter family; membrane protein, ammonia transport, rhesus protein, transpo protein; HET: BOG; 1.30A {Nitrosomonas europaea} PDB: 3bhs_A 3b9y_A* 3b9z_A* Back     alignment and structure
>3hd6_A Ammonium transporter RH type C; ammonia, channel, rhesus, glycoprotein, membran structural genomics, PSI-2, protein structure initiative; HET: BOG; 2.10A {Homo sapiens} Back     alignment and structure
>1u7g_A Probable ammonium transporter; right handed helical bundle, transmembrane helices, ammonia membrane protein, RH protein, transport protein; HET: MSE BOG; 1.40A {Escherichia coli} SCOP: f.44.1.1 PDB: 1u77_A* 1u7c_A* 1xqf_A 1xqe_A 2ns1_A* 2nop_A 2nmr_A 3c1g_A 3c1i_A* 3c1h_A* 2now_A 2npe_A 2npc_A 2npd_A 2npg_A 2npj_A 2nuu_A* 3c1j_A 2npk_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 413
d1u7ga_383 f.44.1.1 (A:) Ammonium transporter AmtB {Escherich 3e-06
d1u7ga_383 f.44.1.1 (A:) Ammonium transporter AmtB {Escherich 0.002
>d1u7ga_ f.44.1.1 (A:) Ammonium transporter AmtB {Escherichia coli [TaxId: 562]} Length = 383 Back     information, alignment and structure

class: Membrane and cell surface proteins and peptides
fold: Ammonium transporter
superfamily: Ammonium transporter
family: Ammonium transporter
domain: Ammonium transporter AmtB
species: Escherichia coli [TaxId: 562]

 Score = 46.6 bits (110), Expect = 3e-06
 Identities = 20/77 (25%), Positives = 34/77 (44%), Gaps = 1/77 (1%)

Query: 69  WNFLFTVNAGLMGMVSVCAGANVFSMWSSLVIGLIAGPLYV-ALRYLVIACGVDDPLDAS 127
            + L   +  + G+V V        +  +L+IG++AG   +  +  L     VDDP D  
Sbjct: 254 PSLLGACSGAIAGLVGVTPACGYIGVGGALIIGVVAGLAGLWGVTMLKRLLRVDDPCDVF 313

Query: 128 AVHFGGGLWGVMSEPLF 144
            VH   G+ G +   +F
Sbjct: 314 GVHGVCGIVGCIMTGIF 330
>d1u7ga_ f.44.1.1 (A:) Ammonium transporter AmtB {Escherichia coli [TaxId: 562]} Length = 383 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query413
d1u7ga_383 Ammonium transporter AmtB {Escherichia coli [TaxId 100.0
d1u7ga_383 Ammonium transporter AmtB {Escherichia coli [TaxId 99.76
>d1u7ga_ f.44.1.1 (A:) Ammonium transporter AmtB {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: Membrane and cell surface proteins and peptides
fold: Ammonium transporter
superfamily: Ammonium transporter
family: Ammonium transporter
domain: Ammonium transporter AmtB
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=1.3e-47  Score=387.05  Aligned_cols=305  Identities=18%  Similarity=0.163  Sum_probs=229.8

Q ss_pred             cccCCCCcchhhhhhhhhh----------hcceecccCCcccchHH-HHHHHhchhhhHHHHHHHHHHcCCCCCC----C
Q psy12939         61 LGLCGRPCWNFLFTVNAGL----------MGMVSVCAGANVFSMWS-SLVIGLIAGPLYVALRYLVIACGVDDPL----D  125 (413)
Q Consensus        61 ~~~~g~~~W~l~~~~~g~l----------aGLV~it~~~~~v~~~~-a~vig~i~g~~~~~~~~~~~~~~idd~l----~  125 (413)
                      +.|.+|+.|.+++++++++          +|+|+   .||.+|.+. .++.-++++++|++++|.+. ++-+...    +
T Consensus         2 ~~d~~d~~~~l~~~~lV~~m~~~Gf~lle~G~vr---~kn~~~~~~k~~~~~~~~~i~~~~~Gy~la-fg~~~~~~g~~~   77 (383)
T d1u7ga_           2 VADKADNAFMMICTALVLFMTIPGIALFYGGLIR---GKNVLSMLTQVTVTFALVCILWVVYGYSLA-SGEGNNFFGNIN   77 (383)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHTTHHHHHHHTTSC---HHHHHHHHHHHHHHHHHHHHHHHHTHHHHH-HSSCSSSCCCST
T ss_pred             CcCcccHHHHHHHHHHHHHHHHHHHHHHhhhhcc---HHHHHHHHHHHHHHHHHHHHheeeEeEEeE-cCCCCCcCCCcc
Confidence            4567899999999887654          56666   999999865 44447788889999999998 5533221    1


Q ss_pred             chhhhccc--chhhhcchhhhhcccc---------eeeeeecccccccccccccCcceEEeccccceeeCCCccccccCc
Q psy12939        126 ASAVHFGG--GLWGVMSEPLFRRGGL---------IYGITDDAVKVTSTNKQTSPLPGITYPIVSHWVWSDEGWLNKLGY  194 (413)
Q Consensus       126 ~~~vHgvg--G~~G~i~~glFA~~~~---------~~~aiaeR~~~~~~~if~~~~~glvYp~~ahWvW~~~GWL~~lG~  194 (413)
                      .+..+...  ...+.++...+..+|+         ++++++||+|+.+|++|+++|++++|||.+||+|+ +|||.++|+
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~fq~~Fa~~a~~IvsGavaeR~~~~~~~i~~~~~~~~vy~~~~hwvw~-~g~l~~lG~  156 (383)
T d1u7ga_          78 WLMLKNIELTAVMGSIYQYIHVAFQGSFACITVGLIVGALAERIRFPAVLIFVVVWLTLSYIPIAHMVWG-GGLLASHGA  156 (383)
T ss_dssp             TGGGTTCCTTCEETTEEHHHHHHHHHHHHHHHHHHHHHHHGGGBCHHHHHHHHHHHHHHTHHHHHHHHHS-SCHHHHHTC
T ss_pred             hhhccCcccccccccchhhHHhHhhhhhhhhhccccccccccccceeEeeehhhHhhhhccchHHheecC-CCccccCCc
Confidence            11111111  1123455555555555         44667899999999999999999999999999995 899999999


Q ss_pred             eeecCCceEEechhHHHHHHHHHhcCCCCcCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccc
Q psy12939        195 SDFAGSGAVHLFAGTCSFIAAYLMGPRIGRFGNGRYSSPPPGHSLPGLLHNAVGAGSIFLWSLTTSFILFGFLYLINMLR  274 (413)
Q Consensus       195 ~DFAGg~vVH~~gG~~aLa~a~~LGpR~grf~~~~~~~~~~~~~~~~~~~qlv~lg~~~lW~g~~~f~~~~~~~~~~~lr  274 (413)
                      +|||||+|||++||+++|+++++||||++|+++     +.++||.+.     +.+|++++|.+|++||......      
T Consensus       157 ~DfaGs~vVH~~gG~~aL~~~~~lgpR~~~~~~-----~~~~~~~~~-----~~lG~~iLw~gW~gFN~gs~~~------  220 (383)
T d1u7ga_         157 LDFAGGTVVHINAAIAGLVGAYLIGKRVGFGKE-----AFKPHNLPM-----VFTGTAILYIGWFGFNAGSAGT------  220 (383)
T ss_dssp             CCSSCTTTTHHHHHHHHHHHHHHSCCCCCTTCS-----SCCGGGHHH-----HHHHHHHHHHHHHHHHHGGGSS------
T ss_pred             eeccCceeeeecccHHHHHHHHhcCCccccccc-----ccccCChhh-----hhHHHHHHHHHHHHhccccccc------
Confidence            999999999999999999999999999998753     345667654     6889999999999998754321      


Q ss_pred             cccccccccccccccccccCCcchhhhhhhhccCCCcchhhhhhhccccceeEEeeecccCCCccceeccceeeEeec-c
Q psy12939        275 VPSTEEIEGLDITKHNEIAYPPSAWNNFHAKHMLPNDHIMIDVLNHNTDARVKVTSTNKQTSPLPGITYPIVSHWVWS-D  353 (413)
Q Consensus       275 v~~~~e~~GLd~~~hg~~ay~~~a~~~f~~~~~~~~~~~~~~i~~G~iagrv~ita~~~~~~~~~a~i~~~va~~vw~-~  353 (413)
                      .++.....  -.+++-..+  ......+..++..++|.++..++||.++|+|++||.|.++.||++++.+.+++.++. .
T Consensus       221 ~~~~~~~~--~~nt~~a~a--~~~~~~~~~~~~~~~k~~~~~~~nG~LaGLVaita~~~~v~p~~A~~iG~i~g~i~~~~  296 (383)
T d1u7ga_         221 ANEIAALA--FVNTVVATA--AAILGWIFGEWALRGLPSLLGACSGAIAGLVGVTPACGYIGVGGALIIGVVAGLAGLWG  296 (383)
T ss_dssp             SSHHHHHH--HHHHHHHHH--HHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHTTTTTTSCHHHHHHHHHHHHHHHHHH
T ss_pred             cchHHHHH--HHHHHhHHH--HHHHHHHHHHHHhcCCCCHHHHHHHhhhhhhhcccCccccchhhHHHHHhhccHHHHHH
Confidence            11111110  111111111  112222233455677889999999999999999999999999999999999987653 2


Q ss_pred             hhhh-hccCceeccCCeeecchhHHHHHHHHHhhccCC
Q psy12939        354 EGWL-NKLGYSDFAGSGAVHLFAGTCSFIAAYLMGPRI  390 (413)
Q Consensus       354 ~g~l-~~l~idD~~g~~~VH~~gG~~Gli~~~l~g~r~  390 (413)
                      ..++ +|+|+||++|+++||+++|+||++++++|+.+.
T Consensus       297 ~~~l~~~~~iDD~~~~~~vHg~~Gi~G~l~~glfa~~~  334 (383)
T d1u7ga_         297 VTMLKRLLRVDDPCDVFGVHGVCGIVGCIMTGIFAASS  334 (383)
T ss_dssp             HHHHHHHHCSCCGGGHHHHHHHHHHHHHHHHHHHTSGG
T ss_pred             HHHHHhhcccccccceEeehhhhHHHHHHHHHHhcCcc
Confidence            3455 479999999999999999999999999998764
>d1u7ga_ f.44.1.1 (A:) Ammonium transporter AmtB {Escherichia coli [TaxId: 562]} Back     information, alignment and structure