Psyllid ID: psy13031

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------
MFSEYNTEAHILKPESVDITIADFDGVLFHISNLSAAGATGAFVGTPAEVALIRMTADGRLPPAERRNYKNVFHALYRMTSQEGVLTLWRGTIPTMGRAMVVNAAQLASYSQAKQFLLSLSYFEENIFCFFVSSMISAFITTVASMPVDIAKTRIQNMKTIDGKPEFKGAFDVLGKTSISLKFYKELEEHGADELLRREYGSLLSEPEPGYNVSVLINLEDVPSNWEEIVKKIGLSRLQCVRTHQPGRCALKLGGDSQENRYVEAKADRVTVVFSTVFRDEDDVIIGKVFMQEFKEGRRASHTAPQVLFSHKEPPLELRNTDARQGDNIGYITFGKYVEAKADRVTVVFSTVFRDEDDVIIGKVFMQEFKEGRRASHTAPQVLFSHKEPPLELRNTDARQGDNIGYITFVLFPRHTNRVARENTINLIHMFRDYLHYHIKCSKAYIHSRMRAKTSDFLKVLNRARPEVKNTEKKTIT
ccEEcHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHcccccEEEEEEcccccccccccccccccHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHcHHHHHHHHHHcccccccHHHHHHHHccccEEEEEccccccEEEEEEccccccccccccccEEEEccccccHHHHHHHHHHHHHHHHHHHHHccccccccccEEEEEEEEEccccccHHHHHHHHHccHHHHHHccccccccccccccccccEEEEcccccEEEEEEccccccHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccEEEEEEEEEEEcccccEEEEEEEEEcccccEEEEEHHHHHcccccccccccccccccccccccccccccccccccEEEEEEEEccccccHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHccccccccccccc
ccccHHHHHHHHcccccEEEEEEcccEEEEEEcHHHHHHHHHHHHccccEEEEEEHHccccccccccccccHHHHHHHHHHHccHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHEEEEEcccccEEEEEEccccccccccccccHHHEEEEcEEEcccHHHHHcccHHHHHHHHHHHHEEcccccccEEEEEEcccccccHHHHHHHHHcHHHHHcccccHHHHHccccccccEEEEEEEccccEEEEEEEEcccHHHHHHHHHHHHHHHcHHHccccccEEEEEEccccHHHccccccccccEEEEEEEEEEEEccccEEEEEEEEcccHHHHHHHHHHHHHHHcHHHccccccEEEEEEccccHHHccccccccccEEEEEEEEcHHHHccccHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHccccccc
mfseynteahilkpesvditiadFDGVLFHIsnlsaagatgafvgtPAEVALIRMtadgrlppaerrnYKNVFHALYRMTSQEGVLTLWrgtiptmgRAMVVNAAQLASYSQAKQFLLSLSYFEENIFCFFVSSMISAFITTVASMPVDIAKTRIQnmktidgkpefkgAFDVLGKTSISLKFYKELEEHGADELLRREYgsllsepepgynvSVLInledvpsnWEEIVKKIGLSrlqcvrthqpgrcalklggdsqenryveakadRVTVVFSTvfrdeddvIIGKVFMQEfkegrrashtapqvlfshkepplelrntdarqgdnigyITFGKYVEAKADRVTVVFSTvfrdeddvIIGKVFMQEfkegrrashtapqvlfshkepplelrntdarqgdnigYITFVLfprhtnrvarENTINLIHMFRDYLHYHIKCSKAYIHSRMRAKTSDFLKVLNRarpevkntekktit
MFSEYnteahilkpesVDITIADFDGVLFHISNLSAAGATGAFVGTPAEVALIRMtadgrlppaeRRNYKNVFHALYRMTSQEGVLTLWRGTIPTMGRAMVVNAAQLASYSQAKQFLLSLSYFEENIFCFFVSSMISAFITTVASMPVDIAKTRIQnmktidgkpefkgAFDVLGKTSISLKFYKELEEHGADELLRREYGSLLSEPEPGYNVSVLINLEDVPSNWEEIVKKIGlsrlqcvrthqpgrcalklggdsqenryveakadrvtvvfstvfrdeddviIGKVFMQEFkegrrashtapqvlfshkepplelrntdarqgdNIGYITFGKYVEAKADRVTVVFStvfrdeddviIGKVFMQEFkegrrashtapqvlfshkepplelrntdarqgdNIGYITFvlfprhtnrVARENTINLIHMFRDYLHYHIKCSKAYIHSRMRAKTSDFLkvlnrarpevkntekktit
MFSEYNTEAHILKPESVDITIADFDGVLFHISNLSAAGATGAFVGTPAEVALIRMTADGRLPPAERRNYKNVFHALYRMTSQEGVLTLWRGTIPTMGRAMVVNAAQLASYSQAKQFLLSLSYFEENIFCFFVSSMISAFITTVASMPVDIAKTRIQNMKTIDGKPEFKGAFDVLGKTSISLKFYKELEEHGADELLRREYGSLLSEPEPGYNVSVLINLEDVPSNWEEIVKKIGLSRLQCVRTHQPGRCALKLGGDSQENRYVEAKADRVTVVFSTVFRDEDDVIIGKVFMQEFKEGRRASHTAPQVLFSHKEPPLELRNTDARQGDNIGYITFGKYVEAKADRVTVVFSTVFRDEDDVIIGKVFMQEFKEGRRASHTAPQVLFSHKEPPLELRNTDARQGDNIGYITFVLFPRHTNRVARENTINLIHMFRDYLHYHIKCSKAYIHSRMRAKTSDFLKVLNRARPEVKNTEKKTIT
*********HILKPESVDITIADFDGVLFHISNLSAAGATGAFVGTPAEVALIRMTADGRLPPAERRNYKNVFHALYRMTSQEGVLTLWRGTIPTMGRAMVVNAAQLASYSQAKQFLLSLSYFEENIFCFFVSSMISAFITTVASMPVDIAKTRIQNMKTIDGKPEFKGAFDVLGKTSISLKFYKELEEHGADELLRREYGSLLSEPEPGYNVSVLINLEDVPSNWEEIVKKIGLSRLQCVRTHQPGRCALKLGGDSQENRYVEAKADRVTVVFSTVFRDEDDVIIGKVFMQEFK******************************GDNIGYITFGKYVEAKADRVTVVFSTVFRDEDDVIIGKVFMQEFK******************************GDNIGYITFVLFPRHTNRVARENTINLIHMFRDYLHYHIKCSKAYIHSRMRAKTSDFLKVL****************
MFSEYNTEAHILKPESVDITIADFDGVLFHISNLSAAGATGAFVGTPAEVALIRMTAD*********NYKNVFHALYRMTSQEGVLTLWRGTIPTMGRAMVVNAAQLASYSQAKQFLLSLSYFEENIFCFFVSSMISAFITTVASMPVDIAKTRIQNMKTIDGKPEFKGAFDVLGKTSISLKFYKELEEHGADELLRREYGSLLSEPEPGYNVSVLINLEDVPSNWEEIVKKIGLSRLQCVRTHQPGRCALKLGGDSQENRYV******VTVVFSTVFRDEDDVIIGKVF****************************RNTDARQGDNIGYITFGKYVEAKADRVTVVFSTVFRDEDDVIIGKVFMQEFKEGRRASHTAPQVLFSHKEPPLELRNTDARQGDNIGYITFVLFPRHTNRVARENTINLIHMFRDYLHYHIKCSKAYIHSRMRAKTSDFLKV*****************
********AHILKPESVDITIADFDGVLFHISNLSAAGATGAFVGTPAEVALIRMTADGRLPPAERRNYKNVFHALYRMTSQEGVLTLWRGTIPTMGRAMVVNAAQLASYSQAKQFLLSLSYFEENIFCFFVSSMISAFITTVASMPVDIAKTRIQNMKTIDGKPEFKGAFDVLGKTSISLKFYKELEEHGADELLRREYGSLLSEPEPGYNVSVLINLEDVPSNWEEIVKKIGLSRLQCVRTHQPGRCALKLGGDSQENRYVEAKADRVTVVFSTVFRDEDDVIIGKVFMQEFKEGRRASHTAPQVLFSHKEPPLELRNTDARQGDNIGYITFGKYVEAKADRVTVVFSTVFRDEDDVIIGKVFMQEFKEGRRASHTAPQVLFSHKEPPLELRNTDARQGDNIGYITFVLFPRHTNRVARENTINLIHMFRDYLHYHIKCSKAYIHSRMRAKTSDFLKVLNRARPE**********
MFSEYNTEAHILKPESVDITIADFDGVLFHISNLSAAGATGAFVGTPAEVALIRMTADGRLPPAERRNYKNVFHALYRMTSQEGVLTLWRGTIPTMGRAMVVNAAQLASYSQAKQFLLSLSYFEENIFCFFVSSMISAFITTVASMPVDIAKTRIQNMKTIDGKPEFKGAFDVLGKTSISLKFYKELEEHGADELLRREYGSLLSEPEPGYNVSVLINLEDVPSNWEEIVKKIGLSRLQCVRTHQPGRCALKLGGDSQENRYVEAKADRVTVVFSTVFRDEDDVIIGKVFMQEFKEGRRASHTAPQVLFSHKEPPLELRNTDARQGDNIGYITFGKYVEAKADRVTVVFSTVFRDEDDVIIGKVFMQEFKEGRRASHTAPQVLFSHKEPPLELRNTDARQGDNIGYITFVLFPRHTNRVARENTINLIHMFRDYLHYHIKCSKAYIHSRMRAKTSDFLKVLNRA*************
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MFSEYNTEAHILKPESVDITIADFDGVLFHISNLSAAGATGAFVGTPAEVALIRMTADGRLPPAERRNYKNVFHALYRMTSQEGVLTLWRGTIPTMGRAMVVNAAQLASYSQAKQFLLSLSYFEENIFCFFVSSMISAFITTVASMPVDIAKTRIQNMKTIDGKPEFKGAFDVLGKTSISLKFYKELEEHGADELLRREYGSLLSEPEPGYNVSVLINLEDVPSNWEEIVKKIGLSRLQCVRTHQPGRCALKLGGDSQENRYVEAKADRVTVVFSTVFRDEDDVIIGKVFMQEFKEGRRASHTAPQVLFSHKEPPLELRNTDARQGDNIGYITFGKYVEAKADRVTVVFSTVFRDEDDVIIGKVFMQEFKEGRRASHTAPQVLFSHKEPPLELRNTDARQGDNIGYITFVLFPRHTNRVARENTINLIHMFRDYLHYHIKCSKAYIHSRMRAKTSDFLKVLNRARPEVKNTEKKTIT
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query477 2.2.26 [Sep-21-2011]
Q9VIM5301 Probable actin-related pr yes N/A 0.490 0.777 0.588 9e-87
Q9CVB6300 Actin-related protein 2/3 yes N/A 0.494 0.786 0.563 3e-84
P85970300 Actin-related protein 2/3 yes N/A 0.494 0.786 0.56 2e-83
Q5R5Z5300 Actin-related protein 2/3 yes N/A 0.494 0.786 0.56 3e-83
O15144300 Actin-related protein 2/3 yes N/A 0.494 0.786 0.56 3e-83
Q3MHR7300 Actin-related protein 2/3 yes N/A 0.494 0.786 0.56 5e-83
Q8WTM6301 Probable actin-related pr yes N/A 0.488 0.774 0.496 6e-71
Q7PVX8304 Probable actin-related pr yes N/A 0.266 0.417 0.851 9e-68
Q02978314 Mitochondrial 2-oxoglutar no N/A 0.293 0.445 0.764 1e-57
P22292314 Mitochondrial 2-oxoglutar no N/A 0.262 0.398 0.742 4e-56
>sp|Q9VIM5|ARPC2_DROME Probable actin-related protein 2/3 complex subunit 2 OS=Drosophila melanogaster GN=Arc-p34 PE=2 SV=2 Back     alignment and function desciption
 Score =  321 bits (822), Expect = 9e-87,   Method: Compositional matrix adjust.
 Identities = 180/306 (58%), Positives = 204/306 (66%), Gaps = 72/306 (23%)

Query: 176 KTSISLKFYKELEEHGADELLRREYGSLLSEPEPGYNVSVLINLEDVPSNWEEIVKKIGL 235
           + SISLKFYK+L+EHGADELL+REYGSLL++ E GYNVSVLINL       EEI      
Sbjct: 56  RISISLKFYKQLQEHGADELLKREYGSLLTDTEEGYNVSVLINL-------EEI------ 102

Query: 236 SRLQCVRTHQPGRCALKLGGDSQENRYVEAKADRVTVV----FSTVFRDEDDVIIGKVFM 291
                     P  C              E  A R+ ++    F++VF    D      + 
Sbjct: 103 ----------PEDC--------------EQIAKRIGLLKRNCFASVFEKYFD------YQ 132

Query: 292 QEFKEGRRASHTAPQVLFSHKEPPLELRNTDARQGDNIGYITFGKYVEAKADRVTVVFST 351
           ++ +EG+             K   +  RN +              YVEAK DRVTVVFST
Sbjct: 133 EQGEEGQ-------------KRAVINYRNDETL------------YVEAKPDRVTVVFST 167

Query: 352 VFRDEDDVIIGKVFMQEFKEGRRASHTAPQVLFSHKEPPLELRNTDARQGDNIGYITFVL 411
           +FRDEDDVIIGKVFMQE +EGRRASHTAPQVLFSH+EPPLEL NTDAR GDNIGY+TFVL
Sbjct: 168 IFRDEDDVIIGKVFMQELREGRRASHTAPQVLFSHREPPLELANTDARVGDNIGYVTFVL 227

Query: 412 FPRHTNRVARENTINLIHMFRDYLHYHIKCSKAYIHSRMRAKTSDFLKVLNRARPEVKNT 471
           FPRHTN+  R+NTINLIHMFRDYLHYHIKCSKAYIHSRMRAKTSDFLKVLNRARPE KNT
Sbjct: 228 FPRHTNKETRDNTINLIHMFRDYLHYHIKCSKAYIHSRMRAKTSDFLKVLNRARPEPKNT 287

Query: 472 EKKTIT 477
           EKKTIT
Sbjct: 288 EKKTIT 293
Functions as actin-binding component of the Arp2/3 complex which is involved in regulation of actin polymerization and together with an activating nucleation-promoting factor (NPF) mediates the formation of branched actin networks. Seems to contact the mother actin filament.
Drosophila melanogaster (taxid: 7227)
>sp|Q9CVB6|ARPC2_MOUSE Actin-related protein 2/3 complex subunit 2 OS=Mus musculus GN=Arpc2 PE=1 SV=3 Back     alignment and function description
>sp|P85970|ARPC2_RAT Actin-related protein 2/3 complex subunit 2 OS=Rattus norvegicus GN=Arpc2 PE=1 SV=1 Back     alignment and function description
>sp|Q5R5Z5|ARPC2_PONAB Actin-related protein 2/3 complex subunit 2 OS=Pongo abelii GN=ARPC2 PE=2 SV=1 Back     alignment and function description
>sp|O15144|ARPC2_HUMAN Actin-related protein 2/3 complex subunit 2 OS=Homo sapiens GN=ARPC2 PE=1 SV=1 Back     alignment and function description
>sp|Q3MHR7|ARPC2_BOVIN Actin-related protein 2/3 complex subunit 2 OS=Bos taurus GN=ARPC2 PE=1 SV=1 Back     alignment and function description
>sp|Q8WTM6|ARPC2_CAEEL Probable actin-related protein 2/3 complex subunit 2 OS=Caenorhabditis elegans GN=arx-4 PE=3 SV=1 Back     alignment and function description
>sp|Q7PVX8|ARPC2_ANOGA Probable actin-related protein 2/3 complex subunit 2 OS=Anopheles gambiae GN=Arc-p34 PE=3 SV=2 Back     alignment and function description
>sp|Q02978|M2OM_HUMAN Mitochondrial 2-oxoglutarate/malate carrier protein OS=Homo sapiens GN=SLC25A11 PE=1 SV=3 Back     alignment and function description
>sp|P22292|M2OM_BOVIN Mitochondrial 2-oxoglutarate/malate carrier protein OS=Bos taurus GN=SLC25A11 PE=1 SV=3 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query477
444708060 885 G-protein coupled bile acid receptor 1 [ 0.580 0.312 0.601 3e-94
195436894301 GK18265 [Drosophila willistoni] gi|19416 0.498 0.790 0.612 8e-94
194758998301 GF15118 [Drosophila ananassae] gi|190615 0.498 0.790 0.605 2e-93
321463976301 hypothetical protein DAPPUDRAFT_306932 [ 0.498 0.790 0.572 2e-89
194878938301 GG21231 [Drosophila erecta] gi|190657340 0.490 0.777 0.588 6e-85
19921584301 Actin-related protein 2/3 complex, subun 0.490 0.777 0.588 6e-85
195484721301 Arc-p34 [Drosophila yakuba] gi|194176908 0.492 0.780 0.586 3e-84
350539567300 putative actin related protein 2/3 compl 0.494 0.786 0.556 2e-83
348541305299 PREDICTED: actin-related protein 2/3 com 0.494 0.789 0.556 4e-83
54020777299 actin related protein 2/3 complex, subun 0.494 0.789 0.553 5e-83
>gi|444708060|gb|ELW49179.1| G-protein coupled bile acid receptor 1 [Tupaia chinensis] Back     alignment and taxonomy information
 Score =  352 bits (902), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 184/306 (60%), Positives = 222/306 (72%), Gaps = 29/306 (9%)

Query: 178 SISLKFYKELEEHGADELLRREYGSLLSEPEPGYNVSVLINLEDVPSNWEEIVKKIGLSR 237
           SISLKFYKEL+ HGADELL+R YGS L  PE GYNVS+L +L+++P++ + IV + G+ +
Sbjct: 58  SISLKFYKELQAHGADELLKRVYGSFLVNPEAGYNVSLLYDLDNLPASKDSIVHQAGMLK 117

Query: 238 LQCVRTHQPGRCALKLGGDSQENR-----------YVEAKADRVTVVFSTVFRDEDDVII 286
             C  +        +  G   ENR           YVE+K DRVTVVFSTVF+D+DDV+I
Sbjct: 118 RNCFASVFEKYFQFQEEGKEGENRAVIHYRDDETMYVESKKDRVTVVFSTVFKDDDDVVI 177

Query: 287 GKVFMQE---FKEG---RRASHTAPQVLFSHKEPPLELRNTDARQGDNIGYITF----GK 336
           GKVFMQ+    + G   R    +  +  F  +E        + ++G+N   I +      
Sbjct: 178 GKVFMQDSIVHQAGMLKRNCFASVFEKYFQFQE--------EGKEGENRAVIHYRDDETM 229

Query: 337 YVEAKADRVTVVFSTVFRDEDDVIIGKVFMQEFKEGRRASHTAPQVLFSHKEPPLELRNT 396
           YVE+K DRVTVVFSTVF+D+DDV+IGKVFMQEFKEGRRASHTAPQVLFSH+EPPLEL++T
Sbjct: 230 YVESKKDRVTVVFSTVFKDDDDVVIGKVFMQEFKEGRRASHTAPQVLFSHREPPLELKDT 289

Query: 397 DARQGDNIGYITFVLFPRHTNRVARENTINLIHMFRDYLHYHIKCSKAYIHSRMRAKTSD 456
           DA  GDNIGYITFVLFPRHTN  AR+NTINLIH FRDYLHYHIKCSKAYIH+RMRAKTSD
Sbjct: 290 DAAVGDNIGYITFVLFPRHTNASARDNTINLIHTFRDYLHYHIKCSKAYIHTRMRAKTSD 349

Query: 457 FLKVLN 462
           FLKVLN
Sbjct: 350 FLKVLN 355

Source: Tupaia chinensis

Species: Tupaia chinensis

Genus: Tupaia

Family: Tupaiidae

Order: Scandentia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota
>gi|195436894|ref|XP_002066390.1| GK18265 [Drosophila willistoni] gi|194162475|gb|EDW77376.1| GK18265 [Drosophila willistoni] Back     alignment and taxonomy information
>gi|194758998|ref|XP_001961743.1| GF15118 [Drosophila ananassae] gi|190615440|gb|EDV30964.1| GF15118 [Drosophila ananassae] Back     alignment and taxonomy information
>gi|321463976|gb|EFX74988.1| hypothetical protein DAPPUDRAFT_306932 [Daphnia pulex] Back     alignment and taxonomy information
>gi|194878938|ref|XP_001974153.1| GG21231 [Drosophila erecta] gi|190657340|gb|EDV54553.1| GG21231 [Drosophila erecta] Back     alignment and taxonomy information
>gi|19921584|ref|NP_610033.1| Actin-related protein 2/3 complex, subunit 2 [Drosophila melanogaster] gi|195351826|ref|XP_002042429.1| GM23346 [Drosophila sechellia] gi|195580379|ref|XP_002080027.1| GD24255 [Drosophila simulans] gi|27923962|sp|Q9VIM5.2|ARPC2_DROME RecName: Full=Probable actin-related protein 2/3 complex subunit 2; AltName: Full=Arp2/3 complex 34 kDa subunit; Short=p34-ARC gi|16648330|gb|AAL25430.1| LD29815p [Drosophila melanogaster] gi|22946908|gb|AAF53892.2| Actin-related protein 2/3 complex, subunit 2 [Drosophila melanogaster] gi|194124298|gb|EDW46341.1| GM23346 [Drosophila sechellia] gi|194192036|gb|EDX05612.1| GD24255 [Drosophila simulans] gi|220945922|gb|ACL85504.1| Arc-p34-PA [synthetic construct] gi|220955618|gb|ACL90352.1| Arc-p34-PA [synthetic construct] Back     alignment and taxonomy information
>gi|195484721|ref|XP_002090807.1| Arc-p34 [Drosophila yakuba] gi|194176908|gb|EDW90519.1| Arc-p34 [Drosophila yakuba] Back     alignment and taxonomy information
>gi|350539567|ref|NP_001232195.1| putative actin related protein 2/3 complex subunit 2 [Taeniopygia guttata] gi|197129531|gb|ACH46029.1| putative actin related protein 2/3 complex subunit 2 [Taeniopygia guttata] gi|197129532|gb|ACH46030.1| putative actin related protein 2/3 complex subunit 2 [Taeniopygia guttata] gi|197129533|gb|ACH46031.1| putative actin related protein 2/3 complex subunit 2 [Taeniopygia guttata] Back     alignment and taxonomy information
>gi|348541305|ref|XP_003458127.1| PREDICTED: actin-related protein 2/3 complex subunit 2-like [Oreochromis niloticus] Back     alignment and taxonomy information
>gi|54020777|ref|NP_001005634.1| actin related protein 2/3 complex, subunit 2, 34kDa [Xenopus (Silurana) tropicalis] gi|49250419|gb|AAH74622.1| actin related protein 2/3 complex, subunit 2, 34kDa [Xenopus (Silurana) tropicalis] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query477
FB|FBgn0032859301 Arpc2 "Actin-related protein 2 0.295 0.468 0.907 4.6e-76
MGI|MGI:1923959300 Arpc2 "actin related protein 2 0.327 0.52 0.768 2.6e-71
RGD|1305848300 Arpc2 "actin related protein 2 0.327 0.52 0.768 2.6e-71
UNIPROTKB|F1P1K3308 ARPC2 "Uncharacterized protein 0.295 0.457 0.858 3.3e-71
UNIPROTKB|O15144300 ARPC2 "Actin-related protein 2 0.327 0.52 0.768 4.2e-71
UNIPROTKB|Q3MHR7300 ARPC2 "Actin-related protein 2 0.327 0.52 0.768 4.2e-71
ZFIN|ZDB-GENE-030131-5276299 arpc2 "actin related protein 2 0.295 0.471 0.843 3.7e-70
UNIPROTKB|F1SS01211 ARPC2 "Uncharacterized protein 0.327 0.739 0.768 3.3e-63
WB|WBGene00021170301 arx-4 [Caenorhabditis elegans 0.289 0.458 0.771 1.4e-62
UNIPROTKB|G4MTR0319 MGG_04745 "ARP2/3 complex 34 k 0.287 0.429 0.569 5.7e-58
FB|FBgn0032859 Arpc2 "Actin-related protein 2/3 complex, subunit 2" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 680 (244.4 bits), Expect = 4.6e-76, Sum P(2) = 4.6e-76
 Identities = 128/141 (90%), Positives = 134/141 (95%)

Query:   337 YVEAKADRVTVVFSTVFRDEDDVIIGKVFMQEFKEGRRASHTAPQVLFSHKEPPLELRNT 396
             YVEAK DRVTVVFST+FRDEDDVIIGKVFMQE +EGRRASHTAPQVLFSH+EPPLEL NT
Sbjct:   153 YVEAKPDRVTVVFSTIFRDEDDVIIGKVFMQELREGRRASHTAPQVLFSHREPPLELANT 212

Query:   397 DARQGDNIGYITFVLFPRHTNRVARENTINLIHMFRDYLHYHIKCSKAYIHSRMRAKTSD 456
             DAR GDNIGY+TFVLFPRHTN+  R+NTINLIHMFRDYLHYHIKCSKAYIHSRMRAKTSD
Sbjct:   213 DARVGDNIGYVTFVLFPRHTNKETRDNTINLIHMFRDYLHYHIKCSKAYIHSRMRAKTSD 272

Query:   457 FLKVLNRARPEVKNTEKKTIT 477
             FLKVLNRARPE KNTEKKTIT
Sbjct:   273 FLKVLNRARPEPKNTEKKTIT 293
GO:0005885 "Arp2/3 protein complex" evidence=ISS;NAS
GO:0003779 "actin binding" evidence=ISS
GO:0008064 "regulation of actin polymerization or depolymerization" evidence=NAS
GO:0034314 "Arp2/3 complex-mediated actin nucleation" evidence=ISS
GO:0005200 "structural constituent of cytoskeleton" evidence=ISS
GO:0008360 "regulation of cell shape" evidence=IMP
GO:0030866 "cortical actin cytoskeleton organization" evidence=IMP
GO:0030031 "cell projection assembly" evidence=IMP
GO:0000902 "cell morphogenesis" evidence=IMP
GO:0046331 "lateral inhibition" evidence=IMP
MGI|MGI:1923959 Arpc2 "actin related protein 2/3 complex, subunit 2" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|1305848 Arpc2 "actin related protein 2/3 complex, subunit 2" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|F1P1K3 ARPC2 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|O15144 ARPC2 "Actin-related protein 2/3 complex subunit 2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q3MHR7 ARPC2 "Actin-related protein 2/3 complex subunit 2" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030131-5276 arpc2 "actin related protein 2/3 complex, subunit 2" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|F1SS01 ARPC2 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
WB|WBGene00021170 arx-4 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
UNIPROTKB|G4MTR0 MGG_04745 "ARP2/3 complex 34 kDa subunit" [Magnaporthe oryzae 70-15 (taxid:242507)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9VIM5ARPC2_DROMENo assigned EC number0.58820.49050.7774yesN/A
O14241ARPC2_SCHPONo assigned EC number0.58690.28090.4227yesN/A
Q9CVB6ARPC2_MOUSENo assigned EC number0.56330.49470.7866yesN/A
Q5R5Z5ARPC2_PONABNo assigned EC number0.560.49470.7866yesN/A
P85970ARPC2_RATNo assigned EC number0.560.49470.7866yesN/A
Q7PVX8ARPC2_ANOGANo assigned EC number0.85100.26620.4177yesN/A
Q3MHR7ARPC2_BOVINNo assigned EC number0.560.49470.7866yesN/A
O15144ARPC2_HUMANNo assigned EC number0.560.49470.7866yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query477
pfam04045240 pfam04045, P34-Arc, Arp2/3 complex, 34 kD subunit 1e-104
pfam0015396 pfam00153, Mito_carr, Mitochondrial carrier protei 5e-17
PTZ00169300 PTZ00169, PTZ00169, ADP/ATP transporter on adenyla 3e-06
pfam0015396 pfam00153, Mito_carr, Mitochondrial carrier protei 5e-06
PTZ00169300 PTZ00169, PTZ00169, ADP/ATP transporter on adenyla 3e-04
>gnl|CDD|217859 pfam04045, P34-Arc, Arp2/3 complex, 34 kD subunit p34-Arc Back     alignment and domain information 
 Score =  311 bits (798), Expect = e-104
 Identities = 132/299 (44%), Positives = 175/299 (58%), Gaps = 67/299 (22%)

Query: 178 SISLKFYKELEEHGADELLRREYGSLL-SEPEPGYNVSVLINLEDVP-SNWEEIVKKIGL 235
           S+SLK + +L ++GA+ELL+REYG+ L  +PEPGY+VS+LI+LE++P    EE+++KI L
Sbjct: 3   SVSLKCWPDLVKYGAEELLKREYGTYLGVKPEPGYDVSLLIDLEELPADEREELIEKIAL 62

Query: 236 SRLQCVRTHQPGRCALKLGGDSQENRYVEAKADRVTVVFSTVFRDEDDVIIGKVFMQEFK 295
                          LK                      +  F         K F ++  
Sbjct: 63  ---------------LK------------------RNCMAAPFE--------KAF-EKQA 80

Query: 296 EGRRASHTAPQVLFSHKEPPLELRNTDARQGDNIGYITFGKYVEAKADRVTVVFSTVFRD 355
           E    +      +  +            R  + I       Y++   DRVTV+FSTVF+D
Sbjct: 81  ELAEEAEGEEVAVIHY------------RDDETI-------YIKPSFDRVTVIFSTVFKD 121

Query: 356 EDDVIIGKVFMQEFKEGRRAS-HTAPQVLFSHKEPPLELRNT--DARQGDNIGYITFVLF 412
           E D IIGKVF+QEF + RR S  TAPQVLFSHKEPPLEL+     A+ GDN+GY+TFVLF
Sbjct: 122 ETDKIIGKVFLQEFVDARRRSRQTAPQVLFSHKEPPLELQGVPGAAKAGDNVGYVTFVLF 181

Query: 413 PRH-TNRVARENTINLIHMFRDYLHYHIKCSKAYIHSRMRAKTSDFLKVLNRARPEVKN 470
           PRH      R+NTI+LI  FR+YLHYHIKCSKAY+HSRMR + ++FLKVLNRA+PE K+
Sbjct: 182 PRHLVTPKRRDNTISLIQTFRNYLHYHIKCSKAYMHSRMRNRVAEFLKVLNRAKPEPKD 240

Arp2/3 protein complex has been implicated in the control of actin polymerisation in cells. The human complex consists of seven subunits which include the actin related Arp2 and Arp3, and five others referred to as p41-Arc, p34-Arc, p21-Arc, p20-Arc, and p16-Arc. This family represents the p34-Arc subunit. Length = 240
>gnl|CDD|215754 pfam00153, Mito_carr, Mitochondrial carrier protein Back     alignment and domain information
>gnl|CDD|240302 PTZ00169, PTZ00169, ADP/ATP transporter on adenylate translocase; Provisional Back     alignment and domain information
>gnl|CDD|215754 pfam00153, Mito_carr, Mitochondrial carrier protein Back     alignment and domain information
>gnl|CDD|240302 PTZ00169, PTZ00169, ADP/ATP transporter on adenylate translocase; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 477
KOG2826|consensus301 100.0
PF04045241 P34-Arc: Arp2/3 complex, 34 kD subunit p34-Arc; In 100.0
KOG0753|consensus317 100.0
KOG0752|consensus320 100.0
KOG2826|consensus301 100.0
PF04045241 P34-Arc: Arp2/3 complex, 34 kD subunit p34-Arc; In 100.0
KOG0764|consensus299 99.98
KOG0760|consensus302 99.97
PTZ00169300 ADP/ATP transporter on adenylate translocase; Prov 99.97
PTZ00169300 ADP/ATP transporter on adenylate translocase; Prov 99.96
KOG0752|consensus320 99.96
KOG0759|consensus286 99.96
KOG0764|consensus299 99.96
KOG0762|consensus311 99.96
KOG0754|consensus294 99.96
KOG0768|consensus323 99.96
KOG0758|consensus297 99.96
KOG0758|consensus297 99.95
KOG0757|consensus319 99.95
PTZ00168259 mitochondrial carrier protein; Provisional 99.95
KOG0757|consensus319 99.95
KOG0762|consensus311 99.95
KOG0760|consensus302 99.95
KOG0753|consensus317 99.95
KOG0751|consensus694 99.94
KOG0754|consensus294 99.94
PTZ00168259 mitochondrial carrier protein; Provisional 99.93
KOG0761|consensus361 99.92
KOG0750|consensus304 99.92
KOG0770|consensus353 99.91
KOG0036|consensus463 99.91
KOG0036|consensus463 99.91
KOG0755|consensus320 99.9
KOG0759|consensus286 99.9
KOG0756|consensus299 99.89
KOG0770|consensus353 99.89
KOG0751|consensus694 99.89
KOG0761|consensus361 99.89
KOG0769|consensus308 99.89
KOG0765|consensus333 99.89
KOG0749|consensus298 99.89
KOG0763|consensus301 99.85
KOG0749|consensus298 99.85
KOG0766|consensus297 99.84
KOG0755|consensus320 99.84
KOG0766|consensus297 99.83
KOG0767|consensus333 99.81
KOG0769|consensus308 99.8
KOG0767|consensus333 99.8
KOG0763|consensus301 99.79
KOG0768|consensus323 99.78
KOG0765|consensus333 99.75
KOG0756|consensus299 99.73
KOG0750|consensus304 99.72
PF0015395 Mito_carr: Mitochondrial carrier protein; InterPro 99.67
KOG1519|consensus297 99.36
KOG1519|consensus297 99.2
KOG2745|consensus321 99.19
PF0015395 Mito_carr: Mitochondrial carrier protein; InterPro 99.08
KOG2745|consensus321 99.03
KOG2954|consensus427 98.7
KOG2954|consensus427 98.32
>KOG2826|consensus Back     alignment and domain information 
Probab=100.00  E-value=2.6e-89  Score=632.56  Aligned_cols=238  Identities=70%  Similarity=1.114  Sum_probs=227.8

Q ss_pred             hhhhhhHHHHHhhhhccchhhhhhccccccccccCcEEEeehhhhccCCCchHHHHHHHhhhhhhhhccCCCccchhhcc
Q psy13031        175 GKTSISLKFYKELEEHGADELLRREYGSLLSEPEPGYNVSVLINLEDVPSNWEEIVKKIGLSRLQCVRTHQPGRCALKLG  254 (477)
Q Consensus       175 ~~iSi~~~~~~~l~~~G~~~llkG~~~~~l~~p~~g~~~sl~~dL~~Lp~~~e~li~~ls~Lk~~~~aa~~~~~~~l~~~  254 (477)
                      -.+|+++|||.+++.+|...+++..|++++..|++||++++.++|++||++.+++.+.+++||+||+++           
T Consensus        55 illSislK~y~elq~~Ga~~LLk~~yg~~~~epE~Gyn~slli~L~~lpa~~~~l~~~i~~lkrn~~as-----------  123 (301)
T KOG2826|consen   55 ILLSISLKFYKELQLHGADDLLKRVYGSYLSEPEPGYNVSLLIDLAELPADKESLAKTISLLKRNCFAS-----------  123 (301)
T ss_pred             EEEEEehhhHHHHHHcCHHHHHHHHhccccCCCCCCccEEEEEEHHhCchhHHHHHHHHHHhhhhHHHH-----------
Confidence            467999999999999999999999999999999999999999999999999999999999999999999           


Q ss_pred             CCCCcceeeeccccceeeeeeccccCccchhhhhhhhhhh-hhccccccCCCccccCCCCCCccccCccccCCCCcceEE
Q psy13031        255 GDSQENRYVEAKADRVTVVFSTVFRDEDDVIIGKVFMQEF-KEGRRASHTAPQVLFSHKEPPLELRNTDARQGDNIGYIT  333 (477)
Q Consensus       255 ~~~~e~~~v~~~~drv~v~f~~~f~~~~d~~~~~~f~q~~-~~~~~~~~~ap~~~~~~~~~~~~~r~~~~~~~e~~~~~~  333 (477)
                                        +|...|+           .|+. +|+             ++.+.|+|||+     |      
T Consensus       124 ------------------~F~k~f~-----------~Q~~~~e~-------------~~r~~I~YRdd-----E------  150 (301)
T KOG2826|consen  124 ------------------VFEKYFQ-----------FQEAGVEG-------------EKRAVIHYRDD-----E------  150 (301)
T ss_pred             ------------------HHHHHHh-----------cchhhhhh-------------hheeEEEeccC-----c------
Confidence                              8888887           5654 344             34589999999     9      


Q ss_pred             EeEeeecCCCeEEEEEEeeccCCcchhhHHHHHHHHHHhhhcCCCCCccccCCCCCCccccCc-ccccCCCeeEEEEEec
Q psy13031        334 FGKYVEAKADRVTVVFSTVFRDEDDVIIGKVFMQEFKEGRRASHTAPQVLFSHKEPPLELRNT-DARQGDNIGYITFVLF  412 (477)
Q Consensus       334 f~~f~~~~~~~vtv~~~~~f~d~~d~~~~k~flqe~~~~r~~~~~ap~~~~~~~~~p~~~~~~-~~~~~~~~~~~~f~~~  412 (477)
                       +||++|++|||||+|||.|||++|+++||||||||+|+||++++||||||||+||||||+++ ++++|+|+||||||||
T Consensus       151 -ti~i~~k~DRVTvvFsTiF~de~D~I~GKVFlQEf~e~Rra~qtAPqVLfShrePPLElkd~~~~~vgdn~gyiTFVLF  229 (301)
T KOG2826|consen  151 -TIYIEPKNDRVTVVFSTIFRDEDDVIIGKVFLQEFVEGRRASQTAPQVLFSHREPPLELKDLYDARVGDNIGYITFVLF  229 (301)
T ss_pred             -eEEEecCCCeEEEEEEEeeccCCceeehHHHHHHHHHHHhhhccccHHHhhcCCCCchhhhcCCcccccccceEEEEEe
Confidence             99999999999999999999999999999999999999999999999999999999999999 7899999999999999


Q ss_pred             CCCCCcchhhhhHHHHhhhhhhhchhhhccchhhhHHHHhhHHHHHHHHhhhCCCCcccccccCC
Q psy13031        413 PRHTNRVARENTINLIHMFRDYLHYHIKCSKAYIHSRMRAKTSDFLKVLNRARPEVKNTEKKTIT  477 (477)
Q Consensus       413 ~~h~~~~~~~~~~~~~~~f~~y~~yhi~~~~~~~h~~mr~~~~~~~~~l~~~~~~~~~~~~~~~~  477 (477)
                      |||++++.+++||++||+|||||||||||||||||+|||+||++|||||||||||++++||||+|
T Consensus       230 pRH~~k~~rd~tI~~i~~FRdylHyHIKcSKaYmHsRMR~k~~dFlKVLNRArpd~~~~erkT~t  294 (301)
T KOG2826|consen  230 PRHTNKETRDNTINLIHLFRDYLHYHIKCSKAYMHSRMRAKTSDFLKVLNRARPDVEDEERKTFT  294 (301)
T ss_pred             cccCCchhccchhHHHHHHHHHhhhhhhhhHHHHHHHHHHhHHHHHHHHhhcCCCccchhhcccc
Confidence            99999999999999999999999999999999999999999999999999999999999999986

>PF04045 P34-Arc: Arp2/3 complex, 34 kD subunit p34-Arc; InterPro: IPR007188 Arp2/3 protein complex has been implicated in the control of actin polymerisation in cells Back     alignment and domain information
>KOG0753|consensus Back     alignment and domain information
>KOG0752|consensus Back     alignment and domain information
>KOG2826|consensus Back     alignment and domain information
>PF04045 P34-Arc: Arp2/3 complex, 34 kD subunit p34-Arc; InterPro: IPR007188 Arp2/3 protein complex has been implicated in the control of actin polymerisation in cells Back     alignment and domain information
>KOG0764|consensus Back     alignment and domain information
>KOG0760|consensus Back     alignment and domain information
>PTZ00169 ADP/ATP transporter on adenylate translocase; Provisional Back     alignment and domain information
>PTZ00169 ADP/ATP transporter on adenylate translocase; Provisional Back     alignment and domain information
>KOG0752|consensus Back     alignment and domain information
>KOG0759|consensus Back     alignment and domain information
>KOG0764|consensus Back     alignment and domain information
>KOG0762|consensus Back     alignment and domain information
>KOG0754|consensus Back     alignment and domain information
>KOG0768|consensus Back     alignment and domain information
>KOG0758|consensus Back     alignment and domain information
>KOG0758|consensus Back     alignment and domain information
>KOG0757|consensus Back     alignment and domain information
>PTZ00168 mitochondrial carrier protein; Provisional Back     alignment and domain information
>KOG0757|consensus Back     alignment and domain information
>KOG0762|consensus Back     alignment and domain information
>KOG0760|consensus Back     alignment and domain information
>KOG0753|consensus Back     alignment and domain information
>KOG0751|consensus Back     alignment and domain information
>KOG0754|consensus Back     alignment and domain information
>PTZ00168 mitochondrial carrier protein; Provisional Back     alignment and domain information
>KOG0761|consensus Back     alignment and domain information
>KOG0750|consensus Back     alignment and domain information
>KOG0770|consensus Back     alignment and domain information
>KOG0036|consensus Back     alignment and domain information
>KOG0036|consensus Back     alignment and domain information
>KOG0755|consensus Back     alignment and domain information
>KOG0759|consensus Back     alignment and domain information
>KOG0756|consensus Back     alignment and domain information
>KOG0770|consensus Back     alignment and domain information
>KOG0751|consensus Back     alignment and domain information
>KOG0761|consensus Back     alignment and domain information
>KOG0769|consensus Back     alignment and domain information
>KOG0765|consensus Back     alignment and domain information
>KOG0749|consensus Back     alignment and domain information
>KOG0763|consensus Back     alignment and domain information
>KOG0749|consensus Back     alignment and domain information
>KOG0766|consensus Back     alignment and domain information
>KOG0755|consensus Back     alignment and domain information
>KOG0766|consensus Back     alignment and domain information
>KOG0767|consensus Back     alignment and domain information
>KOG0769|consensus Back     alignment and domain information
>KOG0767|consensus Back     alignment and domain information
>KOG0763|consensus Back     alignment and domain information
>KOG0768|consensus Back     alignment and domain information
>KOG0765|consensus Back     alignment and domain information
>KOG0756|consensus Back     alignment and domain information
>KOG0750|consensus Back     alignment and domain information
>PF00153 Mito_carr: Mitochondrial carrier protein; InterPro: IPR018108 A variety of substrate carrier proteins that are involved in energy transfer are found in the inner mitochondrial membrane or integral to the membrane of other eukaryotic organelles such as the peroxisome [, , , , , ] Back     alignment and domain information
>KOG1519|consensus Back     alignment and domain information
>KOG1519|consensus Back     alignment and domain information
>KOG2745|consensus Back     alignment and domain information
>PF00153 Mito_carr: Mitochondrial carrier protein; InterPro: IPR018108 A variety of substrate carrier proteins that are involved in energy transfer are found in the inner mitochondrial membrane or integral to the membrane of other eukaryotic organelles such as the peroxisome [, , , , , ] Back     alignment and domain information
>KOG2745|consensus Back     alignment and domain information
>KOG2954|consensus Back     alignment and domain information
>KOG2954|consensus Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query477
1k8k_D300 Crystal Structure Of Arp23 COMPLEX Length = 300 3e-84
3dwl_D317 Crystal Structure Of Fission Yeast Arp2/3 Complex L 3e-39
2lck_A303 Structure Of The Mitochondrial Uncoupling Protein 2 1e-14
>pdb|1K8K|D Chain D, Crystal Structure Of Arp23 COMPLEX Length = 300 Back     alignment and structure 
Iteration: 1

 Score =  308 bits (790), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 168/300 (56%), Positives = 195/300 (65%), Gaps = 64/300 (21%)
Query: 178 SISLKFYKELEEHGADELLRREYGSLLSEPEPGYNVSVLINLEDVPSNWEEIVKKIGLSR 237
           SISLKFYKEL+ HGADELL+R YGS L  PE GYNVS+L +LE++P++ + IV       
Sbjct: 58  SISLKFYKELQAHGADELLKRVYGSYLVNPESGYNVSLLYDLENLPASKDSIV------- 110
Query: 238 LQCVRTHQPGRCALKLGGDSQENRYVEAKADRVTVVFSTVFRDEDDVIIGKVFMQEFKEG 297
                 HQ G                  K +    VF   F+          F +E KEG
Sbjct: 111 ------HQAGML----------------KRNCFASVFEKYFQ----------FQEEGKEG 138
Query: 298 RRASHTAPQVLFSHKEPPLELRNTDARQGDNIGYITFGKYVEAKADRVTVVFSTVFRDED 357
              +              +  R+ +              YVE+K DRVTVVFSTVF+D+D
Sbjct: 139 ENRA-------------VIHYRDDETM------------YVESKKDRVTVVFSTVFKDDD 173
Query: 358 DVIIGKVFMQEFKEGRRASHTAPQVLFSHKEPPLELRNTDARQGDNIGYITFVLFPRHTN 417
           DV+IGKVFMQEFKEGRRASHTAPQVLFSH+EPPLEL++TDA  GDNIGYITFVLFPRHTN
Sbjct: 174 DVVIGKVFMQEFKEGRRASHTAPQVLFSHREPPLELKDTDAAVGDNIGYITFVLFPRHTN 233
Query: 418 RVARENTINLIHMFRDYLHYHIKCSKAYIHSRMRAKTSDFLKVLNRARPEVKNTEKKTIT 477
             AR+NTINLIH FRDYLHYHIKCSKAYIH+RMRAKTSDFLKVLNRARP+ +  E KTIT
Sbjct: 234 ASARDNTINLIHTFRDYLHYHIKCSKAYIHTRMRAKTSDFLKVLNRARPDAEKKEMKTIT 293
>pdb|3DWL|D Chain D, Crystal Structure Of Fission Yeast Arp2/3 Complex Lacking The Arp2 Subunit Length = 317 Back     alignment and structure
>pdb|2LCK|A Chain A, Structure Of The Mitochondrial Uncoupling Protein 2 Determined By Nmr Molecular Fragment Replacement Length = 303 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query477
3dwl_D317 Actin-related protein 2/3 complex subunit 2; prope 9e-89
1k8k_D300 P34, ARP2/3 complex 34 kDa subunit, P34-ARC; beta- 2e-76
1k8k_D300 P34, ARP2/3 complex 34 kDa subunit, P34-ARC; beta- 2e-57
2lck_A303 Mitochondrial uncoupling protein 2; membrane prote 2e-62
2lck_A303 Mitochondrial uncoupling protein 2; membrane prote 5e-17
2lck_A303 Mitochondrial uncoupling protein 2; membrane prote 2e-12
1okc_A297 ADP, ATP carrier protein heart isoform T1; mitocho 3e-16
1okc_A297 ADP, ATP carrier protein heart isoform T1; mitocho 4e-16
1okc_A297 ADP, ATP carrier protein heart isoform T1; mitocho 8e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 9e-08
>3dwl_D Actin-related protein 2/3 complex subunit 2; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} Length = 317 Back     alignment and structure
 Score =  273 bits (698), Expect = 9e-89
 Identities = 114/307 (37%), Positives = 162/307 (52%), Gaps = 56/307 (18%)

Query: 178 SISLKFYKELEEHGADELLRREYGSLLSEPEPGYNVSVLINLEDVPSN---WEEIVKKIG 234
           S+S+K Y EL  +G  +LL++ YG+ + EPE GYN S+LI+L+ +P+     E++   I 
Sbjct: 53  SLSMKCYPELVNYGTLDLLKQIYGAYVHEPEMGYNFSILIDLQQLPATDEEKEQLAMSIS 112

Query: 235 LSRLQCVRTHQPGRCALKLGGDSQENRYVEAKADRVTVVFSTVFRDEDDVIIGKVF-MQE 293
           +               LK                    V +  F         + F  Q 
Sbjct: 113 M---------------LK------------------RNVLAAPFH--------RAFTKQA 131

Query: 294 FKEGRRASHTAPQVLFSHKEPPLELRNTDARQGDNIGYITFGKYVEAKADRVTVVFSTVF 353
                         +   +    EL     R  + I        +  + DRVTVVFST F
Sbjct: 132 ELADLARKDPENAPMLDKQATSQELMAIHYRDEETI-------VLWPEHDRVTVVFSTKF 184

Query: 354 RDEDDVIIGKVFMQEFKEGRR--ASHTAPQVLFSHKEPPLELRNTDA-RQGDNIGYITFV 410
           R+E D I GKVF+QEF + RR  A  TAPQVLFS+++PPLE+R+    ++GD+ G++TFV
Sbjct: 185 REETDRIFGKVFLQEFVDARRRPAIQTAPQVLFSYRDPPLEIRDIQGIQKGDDFGFVTFV 244

Query: 411 LFPRHTNRVARENTINLIHMFRDYLHYHIKCSKAYIHSRMRAKTSDFLKVLNRARPEVKN 470
           LF RH     RE+ I+ I +FR+ LH+HIK SKAY+H RMR + +DF KVLNRA+P+V+ 
Sbjct: 245 LFERHFTPQNREDCISHIQVFRNTLHFHIKASKAYMHQRMRKRVADFQKVLNRAKPDVE- 303

Query: 471 TEKKTIT 477
            E+KT T
Sbjct: 304 LERKTAT 310
>1k8k_D P34, ARP2/3 complex 34 kDa subunit, P34-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: d.198.2.1 d.198.2.1 PDB: 1tyq_D* 1u2v_D* 2p9i_D* 2p9k_D* 2p9l_D 2p9n_D* 2p9p_D* 2p9s_D* 2p9u_D* 3dxk_D* 3dxm_D* 3rse_D Length = 300 Back     alignment and structure
>1k8k_D P34, ARP2/3 complex 34 kDa subunit, P34-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: d.198.2.1 d.198.2.1 PDB: 1tyq_D* 1u2v_D* 2p9i_D* 2p9k_D* 2p9l_D 2p9n_D* 2p9p_D* 2p9s_D* 2p9u_D* 3dxk_D* 3dxm_D* 3rse_D Length = 300 Back     alignment and structure
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus} Length = 303 Back     alignment and structure
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus} Length = 303 Back     alignment and structure
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus} Length = 303 Back     alignment and structure
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A* Length = 297 Back     alignment and structure
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A* Length = 297 Back     alignment and structure
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A* Length = 297 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query477
1k8k_D300 P34, ARP2/3 complex 34 kDa subunit, P34-ARC; beta- 100.0
3dwl_D317 Actin-related protein 2/3 complex subunit 2; prope 100.0
3dwl_D317 Actin-related protein 2/3 complex subunit 2; prope 100.0
1k8k_D300 P34, ARP2/3 complex 34 kDa subunit, P34-ARC; beta- 100.0
2lck_A303 Mitochondrial uncoupling protein 2; membrane prote 99.98
1okc_A297 ADP, ATP carrier protein heart isoform T1; mitocho 99.97
1okc_A297 ADP, ATP carrier protein heart isoform T1; mitocho 99.96
2lck_A303 Mitochondrial uncoupling protein 2; membrane prote 99.96
3dwl_F168 Actin-related protein 2/3 complex subunit 4; prope 84.76
>1k8k_D P34, ARP2/3 complex 34 kDa subunit, P34-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: d.198.2.1 d.198.2.1 PDB: 1tyq_D* 1u2v_D* 2p9i_D* 2p9k_D* 2p9l_D 2p9n_D* 2p9p_D* 2p9s_D* 2p9u_D* 3dxk_D* 3dxm_D* 3rse_D Back     alignment and structure
Probab=100.00  E-value=1.7e-85  Score=643.71  Aligned_cols=239  Identities=68%  Similarity=1.082  Sum_probs=214.5

Q ss_pred             hhhhhhHHHHHhhhhccchhhhhhccccccccccCcEEEeehhhhccCCCchHHHHHHHhhhhhhhhccCCCccchhhcc
Q psy13031        175 GKTSISLKFYKELEEHGADELLRREYGSLLSEPEPGYNVSVLINLEDVPSNWEEIVKKIGLSRLQCVRTHQPGRCALKLG  254 (477)
Q Consensus       175 ~~iSi~~~~~~~l~~~G~~~llkG~~~~~l~~p~~g~~~sl~~dL~~Lp~~~e~li~~ls~Lk~~~~aa~~~~~~~l~~~  254 (477)
                      ..+|++++||++|.++|+.+++++.|+.++..|++||++++.+||++||+++++++.++|+||+|||||           
T Consensus        55 i~vSisl~~~~~L~~~Ga~e~Lk~~Yg~~v~~pe~Gy~~tL~idl~~lp~~~~~li~kia~LKrn~laa-----------  123 (300)
T 1k8k_D           55 VMVSISLKFYKELQAHGADELLKRVYGSYLVNPESGYNVSLLYDLENLPASKDSIVHQAGMLKRNCFAS-----------  123 (300)
T ss_dssp             EEEEEECTTHHHHHTTTHHHHHHHHHGGGEESCCTTCSEEEEEETTSCCSCHHHHHHHHHTHHHHHHHH-----------
T ss_pred             EEEEEEccchHHHhhcCHHHHHHHHccccccCCCCCccEEEEEEHHHCCcCHHHHHHHHHHHHHHHHHH-----------
Confidence            567999999999999999999999999999889999999999999999999999999999999999999           


Q ss_pred             CCCCcceeeeccccceeeeeeccccCccchhhhhhhhhhhhhccccccCCCccccCCCCCCccccCccccCCCCcceEEE
Q psy13031        255 GDSQENRYVEAKADRVTVVFSTVFRDEDDVIIGKVFMQEFKEGRRASHTAPQVLFSHKEPPLELRNTDARQGDNIGYITF  334 (477)
Q Consensus       255 ~~~~e~~~v~~~~drv~v~f~~~f~~~~d~~~~~~f~q~~~~~~~~~~~ap~~~~~~~~~~~~~r~~~~~~~e~~~~~~f  334 (477)
                                        +|...|+           +|+..++            .+....|+||++     |       
T Consensus       124 ------------------pF~~~F~-----------~~~~~~~------------~~~~~~I~YR~~-----E-------  150 (300)
T 1k8k_D          124 ------------------VFEKYFQ-----------FQEEGKE------------GENRAVIHYRDD-----E-------  150 (300)
T ss_dssp             ------------------HHHHHHH-----------HHHHTCC------------SCCCEEEEEETT-----E-------
T ss_pred             ------------------HHHHHHH-----------HHhcccC------------CCceEEeecCCC-----c-------
Confidence                              8888875           3322111            122368999999     9       


Q ss_pred             eEeeecCCCeEEEEEEeeccCCcchhhHHHHHHHHHHhhhcCCCCCccccCCCCCCccccCcccccCCCeeEEEEEecCC
Q psy13031        335 GKYVEAKADRVTVVFSTVFRDEDDVIIGKVFMQEFKEGRRASHTAPQVLFSHKEPPLELRNTDARQGDNIGYITFVLFPR  414 (477)
Q Consensus       335 ~~f~~~~~~~vtv~~~~~f~d~~d~~~~k~flqe~~~~r~~~~~ap~~~~~~~~~p~~~~~~~~~~~~~~~~~~f~~~~~  414 (477)
                      ++||+|++|||||||||+|+|++|+++||||||||+|+||++++||||+||+++||+||+|+++..++|+||||||||||
T Consensus       151 ~iyi~~~~DrVTViFst~F~D~~D~v~gkvFlQEfvdaRr~~~~APqvlfs~~~PPlEL~~~~~~~~~n~gyVTFvLfpR  230 (300)
T 1k8k_D          151 TMYVESKKDRVTVVFSTVFKDDDDVVIGKVFMQEFKEGRRASHTAPQVLFSHREPPLELKDTDAAVGDNIGYITFVLFPR  230 (300)
T ss_dssp             EEEEEECSSCEEEEEEEECSSHHHHHHHHHHHHHHHTGGGTCTTSCEEEEEESSCCGGGTTTTCCCSTTEEEEEEEECHH
T ss_pred             cEEEEeCCCeEEEEEEEeecCcchhhHHHHHHHHHHHHHhccCCCCceecCCCCCChHHcCCccccCCCeEEEEEEeccc
Confidence            99999999999999999999999999999999999999999999999999999999999999877799999999999999


Q ss_pred             CCCcchhhhhHHHHhhhhhhhchhhhccchhhhHHHHhhHHHHHHHHhhhCCCCcccccccCC
Q psy13031        415 HTNRVARENTINLIHMFRDYLHYHIKCSKAYIHSRMRAKTSDFLKVLNRARPEVKNTEKKTIT  477 (477)
Q Consensus       415 h~~~~~~~~~~~~~~~f~~y~~yhi~~~~~~~h~~mr~~~~~~~~~l~~~~~~~~~~~~~~~~  477 (477)
                      |++++++++|||+||+|||||||||||||||||+|||+||++|||||||||||++++||||||
T Consensus       231 H~~~~~~~~ti~~i~~FR~YlhYHIKcSKaymHsRMR~Rv~~flkvLnRAkpe~~~~ekkT~s  293 (300)
T 1k8k_D          231 HTNASARDNTINLIHTFRDYLHYHIKCSKAYIHTRMRAKTSDFLKVLNRARPDAEKKEMKTIT  293 (300)
T ss_dssp             HHSTTTHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCC----------
T ss_pred             cCCchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhcCCCcccccceecc
Confidence            999999999999999999999999999999999999999999999999999999999999996
>3dwl_D Actin-related protein 2/3 complex subunit 2; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} Back     alignment and structure
>3dwl_D Actin-related protein 2/3 complex subunit 2; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} Back     alignment and structure
>1k8k_D P34, ARP2/3 complex 34 kDa subunit, P34-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: d.198.2.1 d.198.2.1 PDB: 1tyq_D* 1u2v_D* 2p9i_D* 2p9k_D* 2p9l_D 2p9n_D* 2p9p_D* 2p9s_D* 2p9u_D* 3dxk_D* 3dxm_D* 3rse_D Back     alignment and structure
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus} Back     alignment and structure
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A* Back     alignment and structure
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A* Back     alignment and structure
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus} Back     alignment and structure
>3dwl_F Actin-related protein 2/3 complex subunit 4; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 477
d1k8kd2164 d.198.2.1 (D:121-284) ARPC2 (34 kDa subunit) {Cow 1e-78
d1k8kd2164 d.198.2.1 (D:121-284) ARPC2 (34 kDa subunit) {Cow 1e-36
d1k8kd1120 d.198.2.1 (D:1-120) ARPC2 (34 kDa subunit) {Cow (B 3e-24
d1k8kd1120 d.198.2.1 (D:1-120) ARPC2 (34 kDa subunit) {Cow (B 2e-06
d1okca_292 f.42.1.1 (A:) ADP,ATP carrier protein {Cow (Bos ta 3e-06
d1okca_292 f.42.1.1 (A:) ADP,ATP carrier protein {Cow (Bos ta 4e-06
d1okca_292 f.42.1.1 (A:) ADP,ATP carrier protein {Cow (Bos ta 9e-06
d1okca_292 f.42.1.1 (A:) ADP,ATP carrier protein {Cow (Bos ta 0.002
>d1k8kd2 d.198.2.1 (D:121-284) ARPC2 (34 kDa subunit) {Cow (Bos taurus) [TaxId: 9913]} Length = 164 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Secretion chaperone-like
superfamily: Arp2/3 complex subunits
family: Arp2/3 complex subunits
domain: ARPC2 (34 kDa subunit)
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  240 bits (614), Expect = 1e-78
 Identities = 115/131 (87%), Positives = 125/131 (95%)

Query: 337 YVEAKADRVTVVFSTVFRDEDDVIIGKVFMQEFKEGRRASHTAPQVLFSHKEPPLELRNT 396
           YVE+K DRVTVVFSTVF+D+DDV+IGKVFMQEFKEGRRASHTAPQVLFSH+EPPLEL++T
Sbjct: 33  YVESKKDRVTVVFSTVFKDDDDVVIGKVFMQEFKEGRRASHTAPQVLFSHREPPLELKDT 92

Query: 397 DARQGDNIGYITFVLFPRHTNRVARENTINLIHMFRDYLHYHIKCSKAYIHSRMRAKTSD 456
           DA  GDNIGYITFVLFPRHTN  AR+NTINLIH FRDYLHYHIKCSKAYIH+RMRAKTSD
Sbjct: 93  DAAVGDNIGYITFVLFPRHTNASARDNTINLIHTFRDYLHYHIKCSKAYIHTRMRAKTSD 152

Query: 457 FLKVLNRARPE 467
           FLKVLNRARP+
Sbjct: 153 FLKVLNRARPD 163
>d1k8kd2 d.198.2.1 (D:121-284) ARPC2 (34 kDa subunit) {Cow (Bos taurus) [TaxId: 9913]} Length = 164 Back     information, alignment and structure
>d1k8kd1 d.198.2.1 (D:1-120) ARPC2 (34 kDa subunit) {Cow (Bos taurus) [TaxId: 9913]} Length = 120 Back     information, alignment and structure
>d1k8kd1 d.198.2.1 (D:1-120) ARPC2 (34 kDa subunit) {Cow (Bos taurus) [TaxId: 9913]} Length = 120 Back     information, alignment and structure
>d1okca_ f.42.1.1 (A:) ADP,ATP carrier protein {Cow (Bos taurus), heart isoform t1 [TaxId: 9913]} Length = 292 Back     information, alignment and structure
>d1okca_ f.42.1.1 (A:) ADP,ATP carrier protein {Cow (Bos taurus), heart isoform t1 [TaxId: 9913]} Length = 292 Back     information, alignment and structure
>d1okca_ f.42.1.1 (A:) ADP,ATP carrier protein {Cow (Bos taurus), heart isoform t1 [TaxId: 9913]} Length = 292 Back     information, alignment and structure
>d1okca_ f.42.1.1 (A:) ADP,ATP carrier protein {Cow (Bos taurus), heart isoform t1 [TaxId: 9913]} Length = 292 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query477
d1k8kd2164 ARPC2 (34 kDa subunit) {Cow (Bos taurus) [TaxId: 9 100.0
d1k8kd2164 ARPC2 (34 kDa subunit) {Cow (Bos taurus) [TaxId: 9 100.0
d1okca_292 ADP,ATP carrier protein {Cow (Bos taurus), heart i 99.95
d1okca_292 ADP,ATP carrier protein {Cow (Bos taurus), heart i 99.93
d1k8kd1120 ARPC2 (34 kDa subunit) {Cow (Bos taurus) [TaxId: 9 99.37
d1k8kf_167 ARPC4 (20 kDa subunit) {Cow (Bos taurus) [TaxId: 9 84.61
>d1k8kd2 d.198.2.1 (D:121-284) ARPC2 (34 kDa subunit) {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Secretion chaperone-like
superfamily: Arp2/3 complex subunits
family: Arp2/3 complex subunits
domain: ARPC2 (34 kDa subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=3.2e-71  Score=489.16  Aligned_cols=146  Identities=79%  Similarity=1.253  Sum_probs=141.6

Q ss_pred             CCCCCccccCccccCCCCcceEEEeEeeecCCCeEEEEEEeeccCCcchhhHHHHHHHHHHhhhcCCCCCccccCCCCCC
Q psy13031        311 HKEPPLELRNTDARQGDNIGYITFGKYVEAKADRVTVVFSTVFRDEDDVIIGKVFMQEFKEGRRASHTAPQVLFSHKEPP  390 (477)
Q Consensus       311 ~~~~~~~~r~~~~~~~e~~~~~~f~~f~~~~~~~vtv~~~~~f~d~~d~~~~k~flqe~~~~r~~~~~ap~~~~~~~~~p  390 (477)
                      ++...|+||++     |       ++||+|++|||||||+|+|+|++|+++||||||||+|+||++++||||||||++||
T Consensus        19 ~~~~~i~YR~~-----E-------~~yv~~~~drvTViFs~~F~d~~D~v~gkvFlQEf~daRr~~~~APqvl~s~~~PP   86 (164)
T d1k8kd2          19 ENRAVIHYRDD-----E-------TMYVESKKDRVTVVFSTVFKDDDDVVIGKVFMQEFKEGRRASHTAPQVLFSHREPP   86 (164)
T ss_dssp             CCCEEEEEETT-----E-------EEEEEECSSCEEEEEEEECSSHHHHHHHHHHHHHHHTGGGTCTTSCEEEEEESSCC
T ss_pred             cceeEEecCCC-----c-------cEEEEeCCCcEEEEEEEEecCcchHHHHHHHHHHHHHHhcccCCCCccccCCCCCc
Confidence            35678999998     9       99999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccCcccccCCCeeEEEEEecCCCCCcchhhhhHHHHhhhhhhhchhhhccchhhhHHHHhhHHHHHHHHhhhCCCC
Q psy13031        391 LELRNTDARQGDNIGYITFVLFPRHTNRVARENTINLIHMFRDYLHYHIKCSKAYIHSRMRAKTSDFLKVLNRARPEV  468 (477)
Q Consensus       391 ~~~~~~~~~~~~~~~~~~f~~~~~h~~~~~~~~~~~~~~~f~~y~~yhi~~~~~~~h~~mr~~~~~~~~~l~~~~~~~  468 (477)
                      +||+++++..++|+|||||||||||++++++++|||+|++|||||||||||||||||+|||+||++|||||||||||.
T Consensus        87 lel~~~~~~~~~n~gyvTFvLfpRH~~~~~~~~ti~~i~~FR~YlhYHIKcSKaymHsRMR~Rv~~flkvLnrAkpe~  164 (164)
T d1k8kd2          87 LELKDTDAAVGDNIGYITFVLFPRHTNASARDNTINLIHTFRDYLHYHIKCSKAYIHTRMRAKTSDFLKVLNRARPDA  164 (164)
T ss_dssp             GGGTTTTCCCSTTEEEEEEEECHHHHSTTTHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCC-
T ss_pred             hHhcCCCcccCCCcceEEEEecccccCchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence            999999988999999999999999999999999999999999999999999999999999999999999999999983
>d1k8kd2 d.198.2.1 (D:121-284) ARPC2 (34 kDa subunit) {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1okca_ f.42.1.1 (A:) ADP,ATP carrier protein {Cow (Bos taurus), heart isoform t1 [TaxId: 9913]} Back     information, alignment and structure
>d1okca_ f.42.1.1 (A:) ADP,ATP carrier protein {Cow (Bos taurus), heart isoform t1 [TaxId: 9913]} Back     information, alignment and structure
>d1k8kd1 d.198.2.1 (D:1-120) ARPC2 (34 kDa subunit) {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1k8kf_ d.198.2.1 (F:) ARPC4 (20 kDa subunit) {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure