Psyllid ID: psy13048

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------19
MSRSQLEHRLGIKSEADTSLDRNSDPSLDMKVPALPLPLNHSKETNEEKRKSARKKEAHAQKFNMYVHYCRNKPDSNALLVQHGGPLFEELQKKHRVDHPVSAYLIKPVQRITKYQLLLKDLQGEIKGQGEIKDGLEVMLSVPRKANDALHLSLLEAPADVNIDAMGEVVLQDALQVWDPKQLIRKEV
cHHHHHHHHHccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHccHHHHHHHHHHHcccHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcHHHHHHHHHHcccccccccccccccccccEEEEcccccccccc
ccHHHHHHHccccccccccccccccccccccccccccccccHHHHHHHHHHHHHcHHHHHHHHcEEEEHcccccccHHHHHHHccHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHcHHHHHHHHHHHHEcccccccHHHHcEEEEcccEEEccHHHHHHHcc
msrsqlehrlgikseadtsldrnsdpsldmkvpalplplnhsketnEEKRKSARKKEAHAQKFNMYVHYcrnkpdsnallvqhggplfeelqkkhrvdhpvsaylikpVQRITKYQLLLKDLQGeikgqgeikDGLEVMLsvprkandaLHLSLleapadvnidAMGEVVLQDAlqvwdpkqlirkev
msrsqlehrlgikseadtsldrnsdpSLDMKvpalplplnhsketneEKRKSARKKEAHAQKFNMYVHYCRNKPDSNALLVQHGGPLFEELQKKHRVDHPVsaylikpvqRITKYQLLLKDLQGEIKGQGEIKDGLEVMLSVPRKANDALHLSLLEAPADVNIDAMGEVVLQDalqvwdpkqlirkev
MSRSQLEHRLGIKSEADTSLDRNSDPSLDMKVPALPLPLNHSKETNeekrksarkkeaHAQKFNMYVHYCRNKPDSNALLVQHGGPLFEELQKKHRVDHPVSAYLIKPVQRITKYQLLLKDLQGEIKGQGEIKDGLEVMLSVPRKANDALHLSLLEAPADVNIDAMGEVVLQDALQVWDPKQLIRKEV
*************************************************************KFNMYVHYCRNKPDSNALLVQHGGPLFEELQKKHRVDHPVSAYLIKPVQRITKYQLLLKDLQGEIKGQGEIKDGLEVMLSVPRKANDALHLSLLEAPADVNIDAMGEVVLQDALQVWDPK*******
***************************LDMKVPALPLPLNHSKETNEEKRKSARKKEAHAQKFNMYVHYCRNKPDSNALLVQHGGPLFEELQKKHRVDHPVSAYLIKPVQRITKYQLLLKDLQGEIKGQGEIKDGLEVMLSVPRKANDALHLSLLEAPADVNIDAMGEVVLQDALQVWDPKQLIR***
**********GIKSEADTSLDRNSDPSLDMKVPALPLPLNHS****************HAQKFNMYVHYCRNKPDSNALLVQHGGPLFEELQKKHRVDHPVSAYLIKPVQRITKYQLLLKDLQGEIKGQGEIKDGLEVMLSVPRKANDALHLSLLEAPADVNIDAMGEVVLQDALQVWDPKQLIRKEV
*************************PSLDMKVPALPLPLNHSKETNEEKRKSARKKEAHAQKFNMYVHYCRNKPDSNALLVQHGGPLFEELQKKHRVDHPVSAYLIKPVQRITKYQLLLKDLQGEIKGQGEIKDGLEVMLSVPRKANDALHLSLLEAPADVNIDAMGEVVLQDALQVWDPKQLIRKE*
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MSRSQLEHRLGIKSEADTSLDRNSDPSLDMKVPALPLPLNHSKETNEEKRKSARKKEAHAQKFNMYVHYCRNKPDSNALLVQHGGPLFEELQKKHRVDHPVSAYLIKPVQRITKYQLLLKDLQGEIKGQGEIKDGLEVMLSVPRKANDALHLSLLEAPADVNIDAMGEVVLQDALQVWDPKQLIRKEV
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query188 2.2.26 [Sep-21-2011]
O60229 2985 Kalirin OS=Homo sapiens G no N/A 0.670 0.042 0.640 8e-44
Q1LUA6 3028 Triple functional domain no N/A 0.670 0.041 0.640 1e-43
P97924 2959 Kalirin OS=Rattus norvegi yes N/A 0.670 0.042 0.632 1e-43
A2CG49 2964 Kalirin OS=Mus musculus G no N/A 0.670 0.042 0.632 2e-43
Q0KL02 3102 Triple functional domain no N/A 0.670 0.040 0.625 2e-42
O75962 3097 Triple functional domain no N/A 0.670 0.040 0.625 2e-42
Q63406 1149 Guanine nucleotide exchan no N/A 0.611 0.100 0.387 2e-17
Q64096 1149 Guanine nucleotide exchan no N/A 0.611 0.100 0.387 2e-17
Q6P720 579 Rho guanine nucleotide ex no N/A 0.638 0.207 0.403 5e-17
O15068 1137 Guanine nucleotide exchan no N/A 0.611 0.101 0.379 6e-17
>sp|O60229|KALRN_HUMAN Kalirin OS=Homo sapiens GN=KALRN PE=1 SV=2 Back     alignment and function desciption
 Score =  176 bits (446), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 82/128 (64%), Positives = 105/128 (82%), Gaps = 2/128 (1%)

Query: 60   AQKFNMYVHYCRNKPDSNALLVQHGGPLFEELQKKHRVDHPVSAYLIKPVQRITKYQLLL 119
            A KF MYV YC+NKPDSN L+++H G  F+E+Q++H + + +S+YLIKPVQRITKYQLLL
Sbjct: 1366 ADKFQMYVTYCKNKPDSNQLILEHAGTFFDEIQQRHGLANSISSYLIKPVQRITKYQLLL 1425

Query: 120  KDLQGEI-KGQGEIKDGLEVMLSVPRKANDALHLSLLEAPADVNIDAMGEVVLQDALQVW 178
            K+L     +G+GE+KDGLEVMLSVP+KANDA+H+S+LE   D N+D  GE++LQDA QVW
Sbjct: 1426 KELLTCCEEGKGELKDGLEVMLSVPKKANDAMHVSMLEG-FDENLDVQGELILQDAFQVW 1484

Query: 179  DPKQLIRK 186
            DPK LIRK
Sbjct: 1485 DPKSLIRK 1492
Promotes the exchange of GDP by GTP. Activates specific Rho GTPase family members, thereby inducing various signaling mechanisms that regulate neuronal shape, growth, and plasticity, through their effects on the actin cytoskeleton. Induces lamellipodia independent of its GEF activity.
Homo sapiens (taxid: 9606)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1
>sp|Q1LUA6|TRIO_DANRE Triple functional domain protein OS=Danio rerio GN=trio PE=3 SV=1 Back     alignment and function description
>sp|P97924|KALRN_RAT Kalirin OS=Rattus norvegicus GN=Kalrn PE=1 SV=3 Back     alignment and function description
>sp|A2CG49|KALRN_MOUSE Kalirin OS=Mus musculus GN=Kalrn PE=1 SV=1 Back     alignment and function description
>sp|Q0KL02|TRIO_MOUSE Triple functional domain protein OS=Mus musculus GN=Trio PE=1 SV=3 Back     alignment and function description
>sp|O75962|TRIO_HUMAN Triple functional domain protein OS=Homo sapiens GN=TRIO PE=1 SV=2 Back     alignment and function description
>sp|Q63406|MCF2L_RAT Guanine nucleotide exchange factor DBS OS=Rattus norvegicus GN=Mcf2l PE=2 SV=3 Back     alignment and function description
>sp|Q64096|MCF2L_MOUSE Guanine nucleotide exchange factor DBS OS=Mus musculus GN=Mcf2l PE=1 SV=2 Back     alignment and function description
>sp|Q6P720|ARHGP_RAT Rho guanine nucleotide exchange factor 25 OS=Rattus norvegicus GN=Arhgef25 PE=2 SV=1 Back     alignment and function description
>sp|O15068|MCF2L_HUMAN Guanine nucleotide exchange factor DBS OS=Homo sapiens GN=MCF2L PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query188
189235153 1604 PREDICTED: similar to AGAP006107-PA [Tri 0.670 0.078 0.765 3e-52
270003787 2475 hypothetical protein TcasGA2_TC003063 [T 0.670 0.050 0.765 4e-52
242007895 2251 Huntingtin-associated protein-interactin 0.670 0.055 0.742 2e-51
307204441 3432 Triple functional domain protein [Harpeg 0.670 0.036 0.765 7e-51
328789247 3087 PREDICTED: triple functional domain prot 0.670 0.040 0.757 8e-51
380019501 2872 PREDICTED: triple functional domain prot 0.670 0.043 0.757 8e-51
383855166 3078 PREDICTED: triple functional domain prot 0.670 0.040 0.757 9e-51
345483533 3031 PREDICTED: kalirin-like [Nasonia vitripe 0.670 0.041 0.757 2e-50
350396743 3149 PREDICTED: triple functional domain prot 0.670 0.040 0.75 5e-50
340715586 3145 PREDICTED: triple functional domain prot 0.670 0.040 0.75 6e-50
>gi|189235153|ref|XP_968509.2| PREDICTED: similar to AGAP006107-PA [Tribolium castaneum] Back     alignment and taxonomy information
 Score =  210 bits (534), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 98/128 (76%), Positives = 115/128 (89%), Gaps = 2/128 (1%)

Query: 60   AQKFNMYVHYCRNKPDSNALLVQHGGPLFEELQKKHRVDHPVSAYLIKPVQRITKYQLLL 119
            AQKF++YVHYC+NKP+SN+LLVQHGG  FEELQKKH+V+HP++AYLIKPVQRITKYQLLL
Sbjct: 1315 AQKFDIYVHYCKNKPESNSLLVQHGGGYFEELQKKHKVEHPIAAYLIKPVQRITKYQLLL 1374

Query: 120  KDLQGEI-KGQGEIKDGLEVMLSVPRKANDALHLSLLEAPADVNIDAMGEVVLQDALQVW 178
            KDLQ    +GQGEIKDGLEVML+VP+KANDA+HLSL+E   DV+ + +GEVVLQDA  VW
Sbjct: 1375 KDLQSCCNEGQGEIKDGLEVMLNVPKKANDAMHLSLVEG-CDVSANKLGEVVLQDAFSVW 1433

Query: 179  DPKQLIRK 186
            DPKQLIRK
Sbjct: 1434 DPKQLIRK 1441

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|270003787|gb|EFA00235.1| hypothetical protein TcasGA2_TC003063 [Tribolium castaneum] Back     alignment and taxonomy information
>gi|242007895|ref|XP_002424753.1| Huntingtin-associated protein-interacting protein, putative [Pediculus humanus corporis] gi|212508256|gb|EEB12015.1| Huntingtin-associated protein-interacting protein, putative [Pediculus humanus corporis] Back     alignment and taxonomy information
>gi|307204441|gb|EFN83148.1| Triple functional domain protein [Harpegnathos saltator] Back     alignment and taxonomy information
>gi|328789247|ref|XP_003251251.1| PREDICTED: triple functional domain protein [Apis mellifera] Back     alignment and taxonomy information
>gi|380019501|ref|XP_003693643.1| PREDICTED: triple functional domain protein-like [Apis florea] Back     alignment and taxonomy information
>gi|383855166|ref|XP_003703088.1| PREDICTED: triple functional domain protein-like [Megachile rotundata] Back     alignment and taxonomy information
>gi|345483533|ref|XP_001599496.2| PREDICTED: kalirin-like [Nasonia vitripennis] Back     alignment and taxonomy information
>gi|350396743|ref|XP_003484649.1| PREDICTED: triple functional domain protein-like [Bombus impatiens] Back     alignment and taxonomy information
>gi|340715586|ref|XP_003396292.1| PREDICTED: triple functional domain protein-like [Bombus terrestris] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query188
FB|FBgn0024277 2263 trio "trio" [Drosophila melano 0.670 0.055 0.718 2.8e-44
UNIPROTKB|I3L9A9335 I3L9A9 "Uncharacterized protei 0.670 0.376 0.625 7.5e-42
UNIPROTKB|I3L9H1 528 LOC100737382 "Uncharacterized 0.670 0.238 0.625 7.5e-42
ZFIN|ZDB-GENE-100921-4 1612 kalrna "kalirin, RhoGEF kinase 0.670 0.078 0.632 1.8e-40
UNIPROTKB|F1M462 1360 Kalrn "Kalirin" [Rattus norveg 0.670 0.092 0.632 5.5e-40
UNIPROTKB|C9IZQ6 1654 KALRN "HCG2022551, isoform CRA 0.670 0.076 0.640 6.4e-40
UNIPROTKB|F1M4V6 1621 Kalrn "Kalirin" [Rattus norveg 0.670 0.077 0.632 9.7e-40
ZFIN|ZDB-GENE-060503-334 3087 si:dkey-158b13.2 "si:dkey-158b 0.670 0.040 0.640 1e-39
UNIPROTKB|I3L821 1406 KALRN "Uncharacterized protein 0.670 0.089 0.640 1.4e-39
UNIPROTKB|F1PUI1 2201 KALRN "Uncharacterized protein 0.670 0.057 0.640 1.5e-39
FB|FBgn0024277 trio "trio" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 468 (169.8 bits), Expect = 2.8e-44, Sum P(2) = 2.8e-44
 Identities = 92/128 (71%), Positives = 106/128 (82%)

Query:    60 AQKFNMYVHYCRNKPDSNALLVQHGGPLFEELQKKHRVDHPVSAYLIKPVQRITKYQLLL 119
             A KF+MYVHYC+NKP SN LLVQHGG  FEELQ++  VDHP+ AYLIKPVQRITKYQLLL
Sbjct:  1367 ASKFDMYVHYCKNKPTSNNLLVQHGGSFFEELQRRLEVDHPLPAYLIKPVQRITKYQLLL 1426

Query:   120 KDLQGEIK-GQGEIKDGLEVMLSVPRKANDALHLSLLEAPADVNIDAMGEVVLQDALQVW 178
             KDL    +   GEIK+GLEVML+VP+KANDA+HLSLLE   DV++D +GEVVLQDA Q W
Sbjct:  1427 KDLLSCCEESHGEIKEGLEVMLNVPKKANDAMHLSLLEN-CDVSVDKLGEVVLQDAFQAW 1485

Query:   179 DPKQLIRK 186
             D KQ+IRK
Sbjct:  1486 DTKQIIRK 1493
GO:0005089 "Rho guanyl-nucleotide exchange factor activity" evidence=ISS;IDA;NAS
GO:0007422 "peripheral nervous system development" evidence=IGI;IMP
GO:0007411 "axon guidance" evidence=IGI;IMP;TAS
GO:0007417 "central nervous system development" evidence=IGI;IMP
GO:0030036 "actin cytoskeleton organization" evidence=IEP;IDA
GO:0005886 "plasma membrane" evidence=IDA
GO:0007266 "Rho protein signal transduction" evidence=IDA
GO:0035023 "regulation of Rho protein signal transduction" evidence=IEA
GO:0005622 "intracellular" evidence=IEA
GO:0005543 "phospholipid binding" evidence=IEA
GO:0050770 "regulation of axonogenesis" evidence=IGI
GO:0016319 "mushroom body development" evidence=IMP
GO:0048675 "axon extension" evidence=IMP
GO:0045887 "positive regulation of synaptic growth at neuromuscular junction" evidence=IMP
GO:0071772 "response to BMP stimulus" evidence=IGI
GO:0007412 "axon target recognition" evidence=IGI
GO:0007480 "imaginal disc-derived leg morphogenesis" evidence=IMP
GO:0046331 "lateral inhibition" evidence=IMP
UNIPROTKB|I3L9A9 I3L9A9 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|I3L9H1 LOC100737382 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-100921-4 kalrna "kalirin, RhoGEF kinase a" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|F1M462 Kalrn "Kalirin" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|C9IZQ6 KALRN "HCG2022551, isoform CRA_j" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1M4V6 Kalrn "Kalirin" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-060503-334 si:dkey-158b13.2 "si:dkey-158b13.2" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|I3L821 KALRN "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|F1PUI1 KALRN "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P97924KALRN_RAT2, ., 7, ., 1, 1, ., 10.63280.67020.0425yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query188
pfam00621179 pfam00621, RhoGEF, RhoGEF domain 6e-16
cd00160181 cd00160, RhoGEF, Guanine nucleotide exchange facto 2e-14
smart00325180 smart00325, RhoGEF, Guanine nucleotide exchange fa 8e-13
cd13240123 cd13240, PH1_Kalirin_Trio_like, Triple functional 2e-09
>gnl|CDD|216028 pfam00621, RhoGEF, RhoGEF domain Back     alignment and domain information 
 Score = 71.5 bits (176), Expect = 6e-16
 Identities = 32/104 (30%), Positives = 49/104 (47%), Gaps = 17/104 (16%)

Query: 59  HAQKFNMYVHYCRNKPDSNALLVQHGG--PLFEELQKKHRVDH-----PVSAYLIKPVQR 111
            A  F +Y  YC N P +  LL +     P F +  K+           ++++LIKPVQR
Sbjct: 79  FAPFFKVYSTYCSNYPRALELLKKLRKKNPRFAKFLKECEASPLCRGLDLNSFLIKPVQR 138

Query: 112 ITKYQLLLKDLQGEIK-------GQGEIKDGLEVMLSVPRKAND 148
           I +Y LLLK+L   +K          ++K  LE +  V  + N+
Sbjct: 139 IPRYPLLLKEL---LKHTPPDHPDYEDLKKALEAIKEVASQINE 179

Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases Also called Dbl-homologous (DH) domain. It appears that pfam00169 domains invariably occur C-terminal to RhoGEF/DH domains. Length = 179
>gnl|CDD|238091 cd00160, RhoGEF, Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases; Also called Dbl-homologous (DH) domain Back     alignment and domain information
>gnl|CDD|214619 smart00325, RhoGEF, Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases Back     alignment and domain information
>gnl|CDD|241394 cd13240, PH1_Kalirin_Trio_like, Triple functional domain pleckstrin homology pleckstrin homology (PH) domain, repeat 1 Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 188
KOG4240|consensus 1025 99.94
KOG0689|consensus 448 99.8
KOG3518|consensus 521 99.79
KOG4424|consensus 623 99.74
cd00160181 RhoGEF Guanine nucleotide exchange factor for Rho/ 99.73
smart00325180 RhoGEF Guanine nucleotide exchange factor for Rho/ 99.68
KOG2996|consensus 865 99.62
KOG3523|consensus 695 99.58
PF00621180 RhoGEF: RhoGEF domain; InterPro: IPR000219 The Rho 99.5
KOG3520|consensus 1167 99.43
KOG3521|consensus 846 99.38
KOG4305|consensus 1029 99.36
KOG3519|consensus 756 99.26
KOG2070|consensus 661 99.2
KOG3522|consensus 925 98.53
KOG3524|consensus 850 98.15
COG5422 1175 ROM1 RhoGEF, Guanine nucleotide exchange factor fo 98.07
KOG3531|consensus 1036 97.5
>KOG4240|consensus Back     alignment and domain information 
Probab=99.94  E-value=2.5e-28  Score=231.80  Aligned_cols=128  Identities=52%  Similarity=0.922  Sum_probs=124.3

Q ss_pred             hhhhcccHHHHhcCHHHHHHHHHHhcc-HHHHHHHHhhCCCCCCcccccchhhhHHhhHHHHHHHHhcc-CChhHHHHHH
Q psy13048         59 HAQKFNMYVHYCRNKPDSNALLVQHGG-PLFEELQKKHRVDHPVSAYLIKPVQRITKYQLLLKDLQGEI-KGQGEIKDGL  136 (188)
Q Consensus        59 ~~~~f~~Y~~Yc~n~~~a~~~l~~~~~-~~f~~~~~~~~~~l~L~s~LikPVQRI~rY~LLLkeLlk~t-~d~~~l~~Al  136 (188)
                      |++.|.+|..||.|.+.+.+++..+.. +||.+|+++....+++.|||++|||||+||.|||++++++| ++..++++|+
T Consensus       716 ~~d~fqly~~Yc~nke~S~ql~~~~a~~~ff~e~qr~~~l~l~~~S~l~kpvqritkYqlllkell~~c~e~~~~lkd~l  795 (1025)
T KOG4240|consen  716 RADDFQLYAKYCQNKELSNQLIRLHAGCSFFQEIQRRHGLELSISSYLIKPVQRITKYQLLLKELLKCCCEGTGDLKDAL  795 (1025)
T ss_pred             HHHHHHHHHHHHhCCcchHHHHHhcccccccHHHHHHhhhhhhhHHHHhHHHHHHHHHHHHHHHHHHhhhhchHHHHHHH
Confidence            999999999999999999999988764 79999999999999999999999999999999999999988 8999999999


Q ss_pred             HHHHHhhHHHhHHHhhhhhcCCCCCCcccccCeeeeceeEEEcCCcccccC
Q psy13048        137 EVMLSVPRKANDALHLSLLEAPADVNIDAMGEVVLQDALQVWDPKQLIRKE  187 (188)
Q Consensus       137 ~~~~~v~~~iNe~~~~~~i~~~~~~~l~~~g~Ll~~g~f~V~~~k~lirkG  187 (188)
                      ++|..|++.+|+.||..+|+| ++.+|..+|.+|++|.|.||+++.++|||
T Consensus       796 ~~ml~v~k~~nd~mh~~~~~~-~d~nl~~lg~~~~q~~f~vw~~k~l~rk~  845 (1025)
T KOG4240|consen  796 EVMLSVPKKVNDSMHLIALEG-YDGNLDELGKLIMQDSFSVWKPKALARKG  845 (1025)
T ss_pred             HHHHhhhhhcccccCHHHHhh-hhhhHHHHHHHHhhccceeecHHHHhhhh
Confidence            999999999999999999999 99999999999999999999999999987

>KOG0689|consensus Back     alignment and domain information
>KOG3518|consensus Back     alignment and domain information
>KOG4424|consensus Back     alignment and domain information
>cd00160 RhoGEF Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases; Also called Dbl-homologous (DH) domain Back     alignment and domain information
>smart00325 RhoGEF Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases Back     alignment and domain information
>KOG2996|consensus Back     alignment and domain information
>KOG3523|consensus Back     alignment and domain information
>PF00621 RhoGEF: RhoGEF domain; InterPro: IPR000219 The Rho family GTPases Rho, Rac and CDC42 regulate a diverse array of cellular processes Back     alignment and domain information
>KOG3520|consensus Back     alignment and domain information
>KOG3521|consensus Back     alignment and domain information
>KOG4305|consensus Back     alignment and domain information
>KOG3519|consensus Back     alignment and domain information
>KOG2070|consensus Back     alignment and domain information
>KOG3522|consensus Back     alignment and domain information
>KOG3524|consensus Back     alignment and domain information
>COG5422 ROM1 RhoGEF, Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases [Signal transduction mechanisms] Back     alignment and domain information
>KOG3531|consensus Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query188
1nty_A311 Crystal Structure Of The First DhPH DOMAIN OF TRIO 1e-43
2nz8_B313 N-Terminal Dhph Cassette Of Trio In Complex With Nu 2e-43
2kr9_A190 Kalirin Dh1 Nmr Structure Length = 190 6e-31
1kzg_A 353 Dbscdc42(Y889f) Length = 353 2e-18
1lb1_A 353 Crystal Structure Of The Dbl And Pleckstrin Homolog 2e-18
1rj2_A 353 Crystal Structure Of The DhPH FRAGMENT OF DBS WITHO 2e-18
1kz7_A 353 Crystal Structure Of The DhPH FRAGMENT OF MURINE DB 3e-17
2rgn_B 354 Crystal Structure Of P63rhogef Complex With Galpha- 2e-16
1ki1_B 352 Guanine Nucleotide Exchange Region Of Intersectin I 9e-05
3jv3_A283 Structure Of Sh3e-Dh Unit Of Murine Intersectin-1l 1e-04
3qbv_B 351 Structure Of Designed Orthogonal Interaction Betwee 2e-04
3gf9_A295 Crystal Structure Of Human Intersectin 2 Rhogef Dom 3e-04
3jzy_A 510 Crystal Structure Of Human Intersectin 2 C2 Domain 6e-04
>pdb|1NTY|A Chain A, Crystal Structure Of The First DhPH DOMAIN OF TRIO TO 1.7 A Length = 311 Back     alignment and structure 
Iteration: 1

 Score =  172 bits (435), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 80/128 (62%), Positives = 105/128 (82%), Gaps = 2/128 (1%)
Query: 60  AQKFNMYVHYCRNKPDSNALLVQHGGPLFEELQKKHRVDHPVSAYLIKPVQRITKYQLLL 119
           A KF MYV YC+NKPDS  L+++H G  F+E+Q++H + + +S+YLIKPVQRITKYQLLL
Sbjct: 94  ADKFQMYVTYCKNKPDSTQLILEHAGSYFDEIQQRHGLANSISSYLIKPVQRITKYQLLL 153
Query: 120 KDLQGEI-KGQGEIKDGLEVMLSVPRKANDALHLSLLEAPADVNIDAMGEVVLQDALQVW 178
           K+L     +G+GEIKDGLEVMLSVP++ANDA+HLS+LE   D NI++ GE++LQ++ QVW
Sbjct: 154 KELLTCCEEGKGEIKDGLEVMLSVPKRANDAMHLSMLEG-FDENIESQGELILQESFQVW 212
Query: 179 DPKQLIRK 186
           DPK LIRK
Sbjct: 213 DPKTLIRK 220
>pdb|2NZ8|B Chain B, N-Terminal Dhph Cassette Of Trio In Complex With Nucleotide- Free Rac1 Length = 313 Back     alignment and structure
>pdb|2KR9|A Chain A, Kalirin Dh1 Nmr Structure Length = 190 Back     alignment and structure
>pdb|1KZG|A Chain A, Dbscdc42(Y889f) Length = 353 Back     alignment and structure
>pdb|1LB1|A Chain A, Crystal Structure Of The Dbl And Pleckstrin Homology Domains Of Dbs In Complex With Rhoa Length = 353 Back     alignment and structure
>pdb|1RJ2|A Chain A, Crystal Structure Of The DhPH FRAGMENT OF DBS WITHOUT Bound Gtpase Length = 353 Back     alignment and structure
>pdb|1KZ7|A Chain A, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN Complex With The Placental Isoform Of Human Cdc42 Length = 353 Back     alignment and structure
>pdb|2RGN|B Chain B, Crystal Structure Of P63rhogef Complex With Galpha-Q And Rhoa Length = 354 Back     alignment and structure
>pdb|1KI1|B Chain B, Guanine Nucleotide Exchange Region Of Intersectin In Complex With Cdc42 Length = 352 Back     alignment and structure
>pdb|3JV3|A Chain A, Structure Of Sh3e-Dh Unit Of Murine Intersectin-1l Length = 283 Back     alignment and structure
>pdb|3QBV|B Chain B, Structure Of Designed Orthogonal Interaction Between Cdc42 And Nucleotide Exchange Domains Of Intersectin Length = 351 Back     alignment and structure
>pdb|3GF9|A Chain A, Crystal Structure Of Human Intersectin 2 Rhogef Domain Length = 295 Back     alignment and structure
>pdb|3JZY|A Chain A, Crystal Structure Of Human Intersectin 2 C2 Domain Length = 510 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query188
1nty_A311 Triple functional domain protein; DBL, pleckstrin, 6e-38
2rgn_B 354 RHOA/RAC/CDC42 exchange factor; heterotrimeric G-p 7e-32
1kz7_A 353 Guanine nucleotide exchange factor DBS; guanine nu 7e-29
2vrw_B 406 P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP 2e-22
1foe_A 377 T-lymphoma invasion and metastasis inducing protei 4e-22
3ky9_A 587 Proto-oncogene VAV; calponin homology domain, DBL 8e-22
1by1_A209 Protein (PIX); RHO-GTPase exchange factor, transpo 9e-20
2dfk_A 402 Collybistin II; DH domain, PH domain, cell cycle; 1e-18
2pz1_A 466 RHO guanine nucleotide exchange factor 4; helical 1e-16
3mpx_A 434 FYVE, rhogef and PH domain-containing protein 5; s 2e-14
1dbh_A 354 Protein (human SOS 1); guanine nucleotide exchange 7e-13
3jv3_A283 Intersectin-1; SH3 domain, DH domain, guanine nucl 1e-10
2z0q_A 346 XPLN, RHO guanine nucleotide exchange factor 3; DH 1e-09
3jzy_A 510 Intersectin 2; C2 domain, structural genomics cons 6e-09
1xcg_A 368 PDZ-rhogef, RHO guanine nucleotide exchange factor 2e-08
3t06_A 418 PDZ-rhogef, RHO guanine nucleotide exchange factor 5e-08
3p6a_A 377 RHO guanine nucleotide exchange factor 1; regulati 1e-07
3odw_A 536 RHO guanine nucleotide exchange factor 1; regulati 1e-07
1txd_A 385 RHO guanine nucleotide exchange factor 12; helical 2e-07
>1nty_A Triple functional domain protein; DBL, pleckstrin, GEF, RHO, GTPase, guanine-nucleotide releas factor, phosphorylation, signaling protein; 1.70A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 2nz8_B 2kr9_A Length = 311 Back     alignment and structure
 Score =  131 bits (332), Expect = 6e-38
 Identities = 80/129 (62%), Positives = 105/129 (81%), Gaps = 2/129 (1%)

Query: 59  HAQKFNMYVHYCRNKPDSNALLVQHGGPLFEELQKKHRVDHPVSAYLIKPVQRITKYQLL 118
            A KF MYV YC+NKPDS  L+++H G  F+E+Q++H + + +S+YLIKPVQRITKYQLL
Sbjct: 93  WADKFQMYVTYCKNKPDSTQLILEHAGSYFDEIQQRHGLANSISSYLIKPVQRITKYQLL 152

Query: 119 LKDLQGEI-KGQGEIKDGLEVMLSVPRKANDALHLSLLEAPADVNIDAMGEVVLQDALQV 177
           LK+L     +G+GEIKDGLEVMLSVP++ANDA+HLS+LE   D NI++ GE++LQ++ QV
Sbjct: 153 LKELLTCCEEGKGEIKDGLEVMLSVPKRANDAMHLSMLEG-FDENIESQGELILQESFQV 211

Query: 178 WDPKQLIRK 186
           WDPK LIRK
Sbjct: 212 WDPKTLIRK 220
>2rgn_B RHOA/RAC/CDC42 exchange factor; heterotrimeric G-protein, small molecular weight G-protein, complex, protein-protein complex, rhogef, galphaq; HET: GDP; 3.50A {Homo sapiens} Length = 354 Back     alignment and structure
>1kz7_A Guanine nucleotide exchange factor DBS; guanine nucleotide exchange factor (GEF), small G-protein, signaling protein; 2.40A {Mus musculus} SCOP: a.87.1.1 b.55.1.1 PDB: 1lb1_A 1kzg_A 1rj2_A Length = 353 Back     alignment and structure
>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding, metal-binding, phosphoprotein, exchange factor, RAC, GTPase, membrane domain; 1.85A {Mus musculus} PDB: 3bji_A 1f5x_A Length = 406 Back     alignment and structure
>1foe_A T-lymphoma invasion and metastasis inducing protein 1; DBL homology domain, pleckstrin homology domain, GTPase, guanine nucleotide exchange factor; 2.80A {Mus musculus} SCOP: a.87.1.1 b.55.1.1 Length = 377 Back     alignment and structure
>3ky9_A Proto-oncogene VAV; calponin homology domain, DBL homology domain, pleckst homology domain, C1 domain, guanine-nucleotide releasing FA metal-binding; 2.73A {Homo sapiens} PDB: 2d86_A Length = 587 Back     alignment and structure
>1by1_A Protein (PIX); RHO-GTPase exchange factor, transport protein; NMR {Homo sapiens} SCOP: a.87.1.1 Length = 209 Back     alignment and structure
>2dfk_A Collybistin II; DH domain, PH domain, cell cycle; 2.15A {Rattus norvegicus} SCOP: a.87.1.1 b.55.1.1 Length = 402 Back     alignment and structure
>2pz1_A RHO guanine nucleotide exchange factor 4; helical bundle, beta barrel, beta sandwich, signaling protei; 2.25A {Homo sapiens} PDB: 2dx1_A 3nmz_D 3nmx_D Length = 466 Back     alignment and structure
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens} Length = 434 Back     alignment and structure
>1dbh_A Protein (human SOS 1); guanine nucleotide exchange factor, gene regulation; 2.30A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 1pms_A 1awe_A Length = 354 Back     alignment and structure
>3jv3_A Intersectin-1; SH3 domain, DH domain, guanine nucleotide exchange factor, autoinhibition, domain-swapped, cell junction, cell project endocytosis; 2.40A {Mus musculus} PDB: 3gf9_A Length = 283 Back     alignment and structure
>2z0q_A XPLN, RHO guanine nucleotide exchange factor 3; DH-PH domain, alternative splicing, cytoplasm, guanine- nucleotide releasing factor; 1.79A {Mus musculus} PDB: 3eo2_A Length = 346 Back     alignment and structure
>3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC), endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B Length = 510 Back     alignment and structure
>1xcg_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; X-RAY crystallography, regulation of RHOA GTPase, protein complex; 2.50A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 3kz1_A* Length = 368 Back     alignment and structure
>3t06_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; DH-PH RHOA complex, pdzrhogef, guanine nucleotide exchange F RHOA, signaling protein; 2.84A {Homo sapiens} Length = 418 Back     alignment and structure
>3p6a_A RHO guanine nucleotide exchange factor 1; regulation of RHOA GTPase, rhogef, DH, PH, signaling PR; 2.50A {Homo sapiens} PDB: 3odo_A Length = 377 Back     alignment and structure
>3odw_A RHO guanine nucleotide exchange factor 1; regulation of RHOA GTPase, rhogef, DH, PH, signaling PR; 3.20A {Homo sapiens} PDB: 3odx_A Length = 536 Back     alignment and structure
>1txd_A RHO guanine nucleotide exchange factor 12; helical bundle (DH), beta sandwich (PH), signaling protein; 2.13A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 1x86_A Length = 385 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query188
1nty_A311 Triple functional domain protein; DBL, pleckstrin, 99.95
1kz7_A 353 Guanine nucleotide exchange factor DBS; guanine nu 99.93
2rgn_B 354 RHOA/RAC/CDC42 exchange factor; heterotrimeric G-p 99.93
2vrw_B 406 P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP 99.86
2dfk_A 402 Collybistin II; DH domain, PH domain, cell cycle; 99.86
1foe_A 377 T-lymphoma invasion and metastasis inducing protei 99.85
2pz1_A 466 RHO guanine nucleotide exchange factor 4; helical 99.84
2z0q_A346 XPLN, RHO guanine nucleotide exchange factor 3; DH 99.84
1by1_A209 Protein (PIX); RHO-GTPase exchange factor, transpo 99.83
3ky9_A 587 Proto-oncogene VAV; calponin homology domain, DBL 99.82
1xcg_A368 PDZ-rhogef, RHO guanine nucleotide exchange factor 99.81
3jv3_A283 Intersectin-1; SH3 domain, DH domain, guanine nucl 99.8
3t06_A 418 PDZ-rhogef, RHO guanine nucleotide exchange factor 99.8
1txd_A 385 RHO guanine nucleotide exchange factor 12; helical 99.8
3p6a_A377 RHO guanine nucleotide exchange factor 1; regulati 99.8
3mpx_A 434 FYVE, rhogef and PH domain-containing protein 5; s 99.79
1dbh_A354 Protein (human SOS 1); guanine nucleotide exchange 99.78
3odw_A 536 RHO guanine nucleotide exchange factor 1; regulati 99.76
3jzy_A 510 Intersectin 2; C2 domain, structural genomics cons 99.71
3ksy_A 1049 SOS-1, SON of sevenless homolog 1; RAS, RAS activa 99.69
2lg1_A185 A-kinase anchor protein 13; metal binding protein; 85.58
>1nty_A Triple functional domain protein; DBL, pleckstrin, GEF, RHO, GTPase, guanine-nucleotide releas factor, phosphorylation, signaling protein; 1.70A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 2nz8_B 2kr9_A Back     alignment and structure
Probab=99.95  E-value=4.3e-28  Score=206.35  Aligned_cols=128  Identities=63%  Similarity=1.069  Sum_probs=120.7

Q ss_pred             hhhhcccHHHHhcCHHHHHHHHHHhccHHHHHHHHhhCCCCCCcccccchhhhHHhhHHHHHHHHhcc-CChhHHHHHHH
Q psy13048         59 HAQKFNMYVHYCRNKPDSNALLVQHGGPLFEELQKKHRVDHPVSAYLIKPVQRITKYQLLLKDLQGEI-KGQGEIKDGLE  137 (188)
Q Consensus        59 ~~~~f~~Y~~Yc~n~~~a~~~l~~~~~~~f~~~~~~~~~~l~L~s~LikPVQRI~rY~LLLkeLlk~t-~d~~~l~~Al~  137 (188)
                      |.+.|++|..||.||+.|..++.++...||++++...+.+++|.+||++||||||||||||++|+|+| +++.++++|++
T Consensus        93 ~~~~~~~Y~~Y~~n~~~a~~~l~~~~~~f~~~~~~~~~~~l~L~~~Li~PvQRi~rY~LLL~~llk~t~~~h~~l~~Al~  172 (311)
T 1nty_A           93 WADKFQMYVTYCKNKPDSTQLILEHAGSYFDEIQQRHGLANSISSYLIKPVQRITKYQLLLKELLTCCEEGKGEIKDGLE  172 (311)
T ss_dssp             TTTTTHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHTCSSCHHHHHTHHHHHHHHHHHHHHHHHHTSCTTCTTHHHHHH
T ss_pred             HHHHhHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHhhhhHHHHHHHHHHHHHHHHhCCCCcHHHHHHHH
Confidence            78899999999999999999998877789999999888889999999999999999999999999999 88999999999


Q ss_pred             HHHHhhHHHhHHHhhhhhcCCCCCCcccccCeeeeceeEEEcCCcccccC
Q psy13048        138 VMLSVPRKANDALHLSLLEAPADVNIDAMGEVVLQDALQVWDPKQLIRKE  187 (188)
Q Consensus       138 ~~~~v~~~iNe~~~~~~i~~~~~~~l~~~g~Ll~~g~f~V~~~k~lirkG  187 (188)
                      .|..++.++|+.++...+++ ++.++..+|+++++|.|.||+++.++++|
T Consensus       173 ~~~~v~~~~N~~~~~~~l~~-~~~~l~~~g~li~~~~~~~~~~~~~~~~~  221 (311)
T 1nty_A          173 VMLSVPKRANDAMHLSMLEG-FDENIESQGELILQESFQVWDPKTLIRKG  221 (311)
T ss_dssp             HHHHHHHHHHHHHHHTTEES-CCSCSGGGCCEEEEEEEEEECSSSSSCCE
T ss_pred             HHHHHHHHHHHHHHHHHHhC-CCCChHhcCCceeeeeEEEEcCccccccc
Confidence            99999999999999999999 88899999999999999999987776655
>1kz7_A Guanine nucleotide exchange factor DBS; guanine nucleotide exchange factor (GEF), small G-protein, signaling protein; 2.40A {Mus musculus} SCOP: a.87.1.1 b.55.1.1 PDB: 1lb1_A 1kzg_A 1rj2_A Back     alignment and structure
>2rgn_B RHOA/RAC/CDC42 exchange factor; heterotrimeric G-protein, small molecular weight G-protein, complex, protein-protein complex, rhogef, galphaq; HET: GDP; 3.50A {Homo sapiens} Back     alignment and structure
>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding, metal-binding, phosphoprotein, exchange factor, RAC, GTPase, membrane domain; 1.85A {Mus musculus} PDB: 3bji_A 1f5x_A Back     alignment and structure
>2dfk_A Collybistin II; DH domain, PH domain, cell cycle; 2.15A {Rattus norvegicus} SCOP: a.87.1.1 b.55.1.1 Back     alignment and structure
>1foe_A T-lymphoma invasion and metastasis inducing protein 1; DBL homology domain, pleckstrin homology domain, GTPase, guanine nucleotide exchange factor; 2.80A {Mus musculus} SCOP: a.87.1.1 b.55.1.1 Back     alignment and structure
>2pz1_A RHO guanine nucleotide exchange factor 4; helical bundle, beta barrel, beta sandwich, signaling protei; 2.25A {Homo sapiens} PDB: 2dx1_A 3nmz_D 3nmx_D Back     alignment and structure
>2z0q_A XPLN, RHO guanine nucleotide exchange factor 3; DH-PH domain, alternative splicing, cytoplasm, guanine- nucleotide releasing factor; 1.79A {Mus musculus} PDB: 3eo2_A Back     alignment and structure
>1by1_A Protein (PIX); RHO-GTPase exchange factor, transport protein; NMR {Homo sapiens} SCOP: a.87.1.1 Back     alignment and structure
>3ky9_A Proto-oncogene VAV; calponin homology domain, DBL homology domain, pleckst homology domain, C1 domain, guanine-nucleotide releasing FA metal-binding; 2.73A {Homo sapiens} PDB: 2d86_A Back     alignment and structure
>1xcg_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; X-RAY crystallography, regulation of RHOA GTPase, protein complex; 2.50A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 3kz1_A* Back     alignment and structure
>3jv3_A Intersectin-1; SH3 domain, DH domain, guanine nucleotide exchange factor, autoinhibition, domain-swapped, cell junction, cell project endocytosis; 2.40A {Mus musculus} PDB: 3gf9_A Back     alignment and structure
>3t06_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; DH-PH RHOA complex, pdzrhogef, guanine nucleotide exchange F RHOA, signaling protein; 2.84A {Homo sapiens} Back     alignment and structure
>1txd_A RHO guanine nucleotide exchange factor 12; helical bundle (DH), beta sandwich (PH), signaling protein; 2.13A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 1x86_A Back     alignment and structure
>3p6a_A RHO guanine nucleotide exchange factor 1; regulation of RHOA GTPase, rhogef, DH, PH, signaling PR; 2.50A {Homo sapiens} PDB: 3odo_A Back     alignment and structure
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens} Back     alignment and structure
>1dbh_A Protein (human SOS 1); guanine nucleotide exchange factor, gene regulation; 2.30A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 1pms_A 1awe_A Back     alignment and structure
>3odw_A RHO guanine nucleotide exchange factor 1; regulation of RHOA GTPase, rhogef, DH, PH, signaling PR; 3.20A {Homo sapiens} PDB: 3odx_A Back     alignment and structure
>3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC), endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B Back     alignment and structure
>3ksy_A SOS-1, SON of sevenless homolog 1; RAS, RAS activator, disease mutation, guanine-nucleotide releasing factor, signaling protein; 3.18A {Homo sapiens} PDB: 1xd4_A 1xdv_A 1q9c_A Back     alignment and structure
>2lg1_A A-kinase anchor protein 13; metal binding protein; NMR {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 188
d1ntya1184 a.87.1.1 (A:1231-1414) Triple functional domain pr 8e-21
d1kz7a1195 a.87.1.1 (A:624-818) Dbl's big sister, Dbs {Mouse 1e-14
d1by1a_209 a.87.1.1 (A:) beta-pix {Human (Homo sapiens) [TaxI 1e-11
d1foea1206 a.87.1.1 (A:1034-1239) GEF of TIAM1 (T-Lymphoma in 2e-08
d1f5xa_208 a.87.1.1 (A:) RhoGEF Vav {Mouse (Mus musculus) [Ta 3e-08
d1dbha1207 a.87.1.1 (A:198-404) Son of sevenless-1 (sos-1) {H 6e-08
d2dfka1203 a.87.1.1 (A:37-239) Rho guanine nucleotide exchang 4e-07
d1ki1b1210 a.87.1.1 (B:1229-1438) GEF of intersectin {Human ( 1e-06
d1xcga1228 a.87.1.1 (A:714-941) Rho guanine nucleotide exchan 8e-06
d1txda1234 a.87.1.1 (A:766-999) Rho guanine nucleotide exchan 2e-05
d1ntya2121 b.55.1.1 (A:1415-1535) Triple functional domain pr 0.002
>d1ntya1 a.87.1.1 (A:1231-1414) Triple functional domain protein TRIO {Human (Homo sapiens) [TaxId: 9606]} Length = 184 Back     information, alignment and structure

class: All alpha proteins
fold: DBL homology domain (DH-domain)
superfamily: DBL homology domain (DH-domain)
family: DBL homology domain (DH-domain)
domain: Triple functional domain protein TRIO
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 82.8 bits (204), Expect = 8e-21
 Identities = 62/98 (63%), Positives = 81/98 (82%), Gaps = 1/98 (1%)

Query: 59  HAQKFNMYVHYCRNKPDSNALLVQHGGPLFEELQKKHRVDHPVSAYLIKPVQRITKYQLL 118
            A KF MYV YC+NKPDS  L+++H G  F+E+Q++H + + +S+YLIKPVQRITKYQLL
Sbjct: 87  WADKFQMYVTYCKNKPDSTQLILEHAGSYFDEIQQRHGLANSISSYLIKPVQRITKYQLL 146

Query: 119 LKDLQGEI-KGQGEIKDGLEVMLSVPRKANDALHLSLL 155
           LK+L     +G+GEIKDGLEVMLSVP++ANDA+HLS+L
Sbjct: 147 LKELLTCCEEGKGEIKDGLEVMLSVPKRANDAMHLSML 184
>d1kz7a1 a.87.1.1 (A:624-818) Dbl's big sister, Dbs {Mouse (Mus musculus) [TaxId: 10090]} Length = 195 Back     information, alignment and structure
>d1by1a_ a.87.1.1 (A:) beta-pix {Human (Homo sapiens) [TaxId: 9606]} Length = 209 Back     information, alignment and structure
>d1foea1 a.87.1.1 (A:1034-1239) GEF of TIAM1 (T-Lymphoma invasion and metastasis inducing protein 1) {Mouse (Mus musculus) [TaxId: 10090]} Length = 206 Back     information, alignment and structure
>d1f5xa_ a.87.1.1 (A:) RhoGEF Vav {Mouse (Mus musculus) [TaxId: 10090]} Length = 208 Back     information, alignment and structure
>d1dbha1 a.87.1.1 (A:198-404) Son of sevenless-1 (sos-1) {Human (Homo sapiens) [TaxId: 9606]} Length = 207 Back     information, alignment and structure
>d2dfka1 a.87.1.1 (A:37-239) Rho guanine nucleotide exchange factor 9, Collybistin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 203 Back     information, alignment and structure
>d1ki1b1 a.87.1.1 (B:1229-1438) GEF of intersectin {Human (Homo sapiens) [TaxId: 9606]} Length = 210 Back     information, alignment and structure
>d1xcga1 a.87.1.1 (A:714-941) Rho guanine nucleotide exchange factor 11, PDZ-RhoGEF {Human (Homo sapiens) [TaxId: 9606]} Length = 228 Back     information, alignment and structure
>d1txda1 a.87.1.1 (A:766-999) Rho guanine nucleotide exchange factor 12 {Human (Homo sapiens), gamma isoform [TaxId: 9606]} Length = 234 Back     information, alignment and structure
>d1ntya2 b.55.1.1 (A:1415-1535) Triple functional domain protein TRIO {Human (Homo sapiens) [TaxId: 9606]} Length = 121 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query188
d1ntya1184 Triple functional domain protein TRIO {Human (Homo 99.88
d1kz7a1195 Dbl's big sister, Dbs {Mouse (Mus musculus) [TaxId 99.86
d1by1a_209 beta-pix {Human (Homo sapiens) [TaxId: 9606]} 99.74
d1f5xa_208 RhoGEF Vav {Mouse (Mus musculus) [TaxId: 10090]} 99.73
d1foea1206 GEF of TIAM1 (T-Lymphoma invasion and metastasis i 99.73
d2dfka1203 Rho guanine nucleotide exchange factor 9, Collybis 99.72
d1ki1b1210 GEF of intersectin {Human (Homo sapiens) [TaxId: 9 99.71
d1txda1234 Rho guanine nucleotide exchange factor 12 {Human ( 99.62
d1xcga1228 Rho guanine nucleotide exchange factor 11, PDZ-Rho 99.61
d1dbha1207 Son of sevenless-1 (sos-1) {Human (Homo sapiens) [ 99.57
>d1ntya1 a.87.1.1 (A:1231-1414) Triple functional domain protein TRIO {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: DBL homology domain (DH-domain)
superfamily: DBL homology domain (DH-domain)
family: DBL homology domain (DH-domain)
domain: Triple functional domain protein TRIO
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=2.8e-23  Score=162.55  Aligned_cols=97  Identities=64%  Similarity=1.090  Sum_probs=92.5

Q ss_pred             hhhhcccHHHHhcCHHHHHHHHHHhccHHHHHHHHhhCCCCCCcccccchhhhHHhhHHHHHHHHhcc-CChhHHHHHHH
Q psy13048         59 HAQKFNMYVHYCRNKPDSNALLVQHGGPLFEELQKKHRVDHPVSAYLIKPVQRITKYQLLLKDLQGEI-KGQGEIKDGLE  137 (188)
Q Consensus        59 ~~~~f~~Y~~Yc~n~~~a~~~l~~~~~~~f~~~~~~~~~~l~L~s~LikPVQRI~rY~LLLkeLlk~t-~d~~~l~~Al~  137 (188)
                      |.+.|++|..||.||+.|...+.+....||+++.+.....++|.+||++|||||+||||||++|+|+| +++.++++|++
T Consensus        87 ~~~~~~~Y~~Y~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~l~~~Li~PvQRl~rY~lLL~~llk~T~~~~~dl~~al~  166 (184)
T d1ntya1          87 WADKFQMYVTYCKNKPDSTQLILEHAGSYFDEIQQRHGLANSISSYLIKPVQRITKYQLLLKELLTCCEEGKGEIKDGLE  166 (184)
T ss_dssp             TTTTTHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHTCSSCHHHHHTHHHHHHHHHHHHHHHHHHTSCTTCTTHHHHHH
T ss_pred             HHHHHHHHHHHHhCHHHHHHHHHHHHhHHHHHHHHhhccccCHHHHHHhHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHH
Confidence            88999999999999999999998888889999999988899999999999999999999999999999 89999999999


Q ss_pred             HHHHhhHHHhHHHhhhhh
Q psy13048        138 VMLSVPRKANDALHLSLL  155 (188)
Q Consensus       138 ~~~~v~~~iNe~~~~~~i  155 (188)
                      .|++++.+||++|+.+.|
T Consensus       167 ~i~~v~~~ine~~~~s~~  184 (184)
T d1ntya1         167 VMLSVPKRANDAMHLSML  184 (184)
T ss_dssp             HHHHHHHHHHHHHHHTTE
T ss_pred             HHHHHHHHHHHHHHHhcC
Confidence            999999999999998754
>d1kz7a1 a.87.1.1 (A:624-818) Dbl's big sister, Dbs {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1by1a_ a.87.1.1 (A:) beta-pix {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1f5xa_ a.87.1.1 (A:) RhoGEF Vav {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1foea1 a.87.1.1 (A:1034-1239) GEF of TIAM1 (T-Lymphoma invasion and metastasis inducing protein 1) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2dfka1 a.87.1.1 (A:37-239) Rho guanine nucleotide exchange factor 9, Collybistin {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1ki1b1 a.87.1.1 (B:1229-1438) GEF of intersectin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1txda1 a.87.1.1 (A:766-999) Rho guanine nucleotide exchange factor 12 {Human (Homo sapiens), gamma isoform [TaxId: 9606]} Back     information, alignment and structure
>d1xcga1 a.87.1.1 (A:714-941) Rho guanine nucleotide exchange factor 11, PDZ-RhoGEF {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1dbha1 a.87.1.1 (A:198-404) Son of sevenless-1 (sos-1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure